BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045242
         (243 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1UP7|A Chain A, Structure Of The 6-Phospho-Beta Glucosidase From
           Thermotoga Maritima At 2.4 Anstrom Resolution In The
           Tetragonal Form With Nad And Glucose-6-Phosphate
 pdb|1UP7|B Chain B, Structure Of The 6-Phospho-Beta Glucosidase From
           Thermotoga Maritima At 2.4 Anstrom Resolution In The
           Tetragonal Form With Nad And Glucose-6-Phosphate
 pdb|1UP7|C Chain C, Structure Of The 6-Phospho-Beta Glucosidase From
           Thermotoga Maritima At 2.4 Anstrom Resolution In The
           Tetragonal Form With Nad And Glucose-6-Phosphate
 pdb|1UP7|D Chain D, Structure Of The 6-Phospho-Beta Glucosidase From
           Thermotoga Maritima At 2.4 Anstrom Resolution In The
           Tetragonal Form With Nad And Glucose-6-Phosphate
 pdb|1UP7|E Chain E, Structure Of The 6-Phospho-Beta Glucosidase From
           Thermotoga Maritima At 2.4 Anstrom Resolution In The
           Tetragonal Form With Nad And Glucose-6-Phosphate
 pdb|1UP7|F Chain F, Structure Of The 6-Phospho-Beta Glucosidase From
           Thermotoga Maritima At 2.4 Anstrom Resolution In The
           Tetragonal Form With Nad And Glucose-6-Phosphate
 pdb|1UP7|G Chain G, Structure Of The 6-Phospho-Beta Glucosidase From
           Thermotoga Maritima At 2.4 Anstrom Resolution In The
           Tetragonal Form With Nad And Glucose-6-Phosphate
 pdb|1UP7|H Chain H, Structure Of The 6-Phospho-Beta Glucosidase From
           Thermotoga Maritima At 2.4 Anstrom Resolution In The
           Tetragonal Form With Nad And Glucose-6-Phosphate
          Length = 417

 Score = 31.6 bits (70), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 16/77 (20%), Positives = 35/77 (45%)

Query: 123 IIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTLIKGPVLDLPWTNHNYHQESTSNSSVQS 182
           ++++EK  F K+ +  ++   +   GG+M+ T     + DL       H  +T N+    
Sbjct: 267 VMKIEKELFEKYRTAVEIPEELTKRGGSMYSTAAAHLIRDLETDEGKIHIVNTRNNGSIE 326

Query: 183 PIKGALMITIGCFSWAG 199
            +    ++ I C+  +G
Sbjct: 327 NLPDDYVLEIPCYVRSG 343


>pdb|4A0B|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
           Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
 pdb|4A0B|C Chain C, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
           Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
          Length = 1159

 Score = 29.3 bits (64), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 15/86 (17%)

Query: 164 PWTNHNYHQESTSNSSVQSPIKGALMITIGCFSWAGFMVLQAITLKSYPTELSLTALIC- 222
           PW   N   E++   +V SP  GA++I     ++       AI     P  +  + ++C 
Sbjct: 225 PWKQENVEAEASMVIAVPSPFGGAIIIGQESITYHNGDKYLAIA----PPIIKQSTIVCH 280

Query: 223 ----------LMGTIEGTIVALFLER 238
                     L+G +EG +  L LE+
Sbjct: 281 NRVDPNGSRYLLGDMEGRLFMLLLEK 306


>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
           Royal Palm Tree
          Length = 304

 Score = 28.5 bits (62), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 7/80 (8%)

Query: 82  LGLLEPTIDQNLFYTGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVF 141
           L ++ P++  N++YTG++ T    T+  A  L   A L A +    K N     +WA  F
Sbjct: 222 LDIITPSVLDNMYYTGVQLTLGLLTSDQA--LVTEANLSAAV----KANAMNLTAWASKF 275

Query: 142 G-TIVTVGGAMFMTLIKGPV 160
              +V +G    +T  +G +
Sbjct: 276 AQAMVKMGQIEVLTGTQGEI 295


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.329    0.139    0.420 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,409,646
Number of Sequences: 62578
Number of extensions: 229699
Number of successful extensions: 495
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 494
Number of HSP's gapped (non-prelim): 6
length of query: 243
length of database: 14,973,337
effective HSP length: 96
effective length of query: 147
effective length of database: 8,965,849
effective search space: 1317979803
effective search space used: 1317979803
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.9 bits)