Query 045242
Match_columns 243
No_of_seqs 143 out of 1725
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 19:50:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045242.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045242hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.6 8.2E-07 2.8E-11 63.9 11.7 68 81-154 34-102 (110)
2 2i68_A Protein EMRE; transmemb 98.6 1.3E-07 4.4E-12 70.7 6.7 69 81-155 34-103 (137)
3 1v54_M VIIIB, IX, cytochrome C 9.7 1.7E+02 0.006 16.8 1.9 22 127-153 8-29 (46)
4 2i68_A Protein EMRE; transmemb 8.0 5.9E+02 0.02 17.9 5.5 22 191-212 34-55 (137)
5 3hd6_A Ammonium transporter RH 8.0 1.1E+03 0.036 20.8 13.9 22 78-99 224-245 (490)
6 2hac_A T-cell surface glycopro 7.4 2.7E+02 0.0091 14.7 1.8 17 116-132 15-31 (33)
7 1q90_R Cytochrome B6-F complex 7.1 4.1E+02 0.014 15.3 3.2 25 69-93 7-31 (49)
8 3mp7_B Preprotein translocase 7.0 1.8E+02 0.006 17.8 1.2 27 127-153 23-49 (61)
9 2jp3_A FXYD domain-containing 6.2 3.8E+02 0.013 16.6 2.4 15 140-154 23-37 (67)
10 2jo1_A Phospholemman; FXYD1, N 6.0 3.9E+02 0.013 16.8 2.4 15 140-154 22-36 (72)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.60 E-value=8.2e-07 Score=63.90 Aligned_cols=68 Identities=12% Similarity=0.245 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHhhcccChhhhhhh-ccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHH
Q 045242 81 LLGLLEPTIDQNLFYTGMKYTTATFTTAM-ANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMT 154 (243)
Q Consensus 81 ~~g~~~~~~~~~~~~~~l~~~~~~~a~~i-~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~ 154 (243)
..+.+++..++.++..++++.|.+.+..+ ..+.|+++++++++++||++++.+ ++|+.+.+.|++++.
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~------~~Gi~lIi~Gv~~l~ 102 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLIIN 102 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHh
Confidence 46667778999999999999999999887 799999999999999999999996 999999999999986
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.56 E-value=1.3e-07 Score=70.72 Aligned_cols=69 Identities=13% Similarity=0.261 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHhhcccChhhhhhh-ccchhHHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHHHH
Q 045242 81 LLGLLEPTIDQNLFYTGMKYTTATFTTAM-ANVLPAFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFMTL 155 (243)
Q Consensus 81 ~~g~~~~~~~~~~~~~~l~~~~~~~a~~i-~~~~Pi~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~~~ 155 (243)
..+++.+.+++.++..++++.|++.+..+ .++.|++++++++++++|++++.+ ++|+.+.++|++++..
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~------~~Gi~LIi~GV~ll~~ 103 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPA------IIGMMLICAGVLIINL 103 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------C------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHH------HHHHHHHHHHHHHHhc
Confidence 56777789999999999999999999888 899999999999999999999997 9999999999999974
No 3
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=9.69 E-value=1.7e+02 Score=16.75 Aligned_cols=22 Identities=14% Similarity=0.131 Sum_probs=13.5
Q ss_pred ccccccccccccchhHHHHHHHHHHHH
Q 045242 127 EKVNFRKFHSWAKVFGTIVTVGGAMFM 153 (243)
Q Consensus 127 e~~~~~~~~~~~~~~g~~l~~~Gv~l~ 153 (243)
++++..+ +.+|+.+++++...-
T Consensus 8 ~~~s~~E-----~aigl~v~f~~~L~P 29 (46)
T 1v54_M 8 TPTSPKE-----QAIGLSVTFLSFLLP 29 (46)
T ss_dssp SCCCHHH-----HHHHHHHHHHHHHHH
T ss_pred CCCCHHH-----HHHHHHHHHHHHHhh
Confidence 4555555 677777777665543
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=8.05 E-value=5.9e+02 Score=17.92 Aligned_cols=22 Identities=23% Similarity=0.149 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC
Q 045242 191 TIGCFSWAGFMVLQAITLKSYP 212 (243)
Q Consensus 191 llaal~~a~~~v~~k~~~~~~~ 212 (243)
+++.++++++...--+..++.|
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~ 55 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIP 55 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHhCC
Confidence 3445555555555555566665
No 5
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=7.96 E-value=1.1e+03 Score=20.82 Aligned_cols=22 Identities=14% Similarity=0.110 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhc
Q 045242 78 KILLLGLLEPTIDQNLFYTGMK 99 (243)
Q Consensus 78 ~~~~~g~~~~~~~~~~~~~~l~ 99 (243)
.+..+|.+....+...++-+..
T Consensus 224 ~~a~LGt~lLW~GWfGFN~gs~ 245 (490)
T 3hd6_A 224 LFAMIGTLFLWMYWPSFNSAIS 245 (490)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHHHhhchhhh
Confidence 4555555555666666665544
No 6
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=7.39 E-value=2.7e+02 Score=14.71 Aligned_cols=17 Identities=6% Similarity=0.131 Sum_probs=10.5
Q ss_pred HHHHHHHHHhhcccccc
Q 045242 116 FAFLMAWIIRLEKVNFR 132 (243)
Q Consensus 116 ~~~il~~~~~~e~~~~~ 132 (243)
..+++..++.+||+...
T Consensus 15 Ygii~T~Ly~R~K~~~~ 31 (33)
T 2hac_A 15 YGVILTALFLRVKFSRS 31 (33)
T ss_dssp HHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 34456666777777653
No 7
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=7.13 E-value=4.1e+02 Score=15.31 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=16.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Q 045242 69 PKMTLSIFVKILLLGLLEPTIDQNL 93 (243)
Q Consensus 69 ~~~~~~~~~~~~~~g~~~~~~~~~~ 93 (243)
+.++||+++..+..|..+.......
T Consensus 7 pdm~RRqfln~l~~G~~a~~a~~~~ 31 (49)
T 1q90_R 7 PDMNKRNIMNLILAGGAGLPITTLA 31 (49)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888888777764444333
No 8
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=6.98 E-value=1.8e+02 Score=17.75 Aligned_cols=27 Identities=26% Similarity=0.316 Sum_probs=14.8
Q ss_pred ccccccccccccchhHHHHHHHHHHHH
Q 045242 127 EKVNFRKFHSWAKVFGTIVTVGGAMFM 153 (243)
Q Consensus 127 e~~~~~~~~~~~~~~g~~l~~~Gv~l~ 153 (243)
+|+++++...-+|..++.+.+.|.+-.
T Consensus 23 ~KPd~~Ef~~iak~~~iG~~i~G~iGf 49 (61)
T 3mp7_B 23 KKPNWATYKRAAKITGLGIILIGLIGM 49 (61)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556655544444566666666665433
No 9
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=6.17 E-value=3.8e+02 Score=16.61 Aligned_cols=15 Identities=20% Similarity=0.631 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHHHHH
Q 045242 140 VFGTIVTVGGAMFMT 154 (243)
Q Consensus 140 ~~g~~l~~~Gv~l~~ 154 (243)
+.+.++.++|++++.
T Consensus 23 ifA~vLfi~GI~iil 37 (67)
T 2jp3_A 23 IFGGLLCIAGIALAL 37 (67)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 566777778888875
No 10
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=6.01 E-value=3.9e+02 Score=16.76 Aligned_cols=15 Identities=20% Similarity=0.357 Sum_probs=10.9
Q ss_pred hhHHHHHHHHHHHHH
Q 045242 140 VFGTIVTVGGAMFMT 154 (243)
Q Consensus 140 ~~g~~l~~~Gv~l~~ 154 (243)
+.+.++.++|++++.
T Consensus 22 ifA~vLfi~GI~iil 36 (72)
T 2jo1_A 22 VIAGILFILGILIVL 36 (72)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 566777778888874
Done!