Query 045242
Match_columns 243
No_of_seqs 143 out of 1725
Neff 8.9
Searched_HMMs 13730
Date Mon Mar 25 19:50:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045242.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045242hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 54.9 7.8 0.00057 17.9 2.9 20 184-203 2-21 (27)
2 d2axtt1 f.23.34.1 (T:1-30) Pho 7.5 1.3E+02 0.0096 13.8 4.1 23 218-240 4-26 (30)
3 d1u7ga_ f.44.1.1 (A:) Ammonium 6.9 4.9E+02 0.036 19.9 17.5 49 187-237 283-332 (383)
4 d1q90r_ f.23.12.1 (R:) ISP sub 6.8 1.8E+02 0.013 14.7 3.2 25 69-93 5-29 (39)
5 d1v54m_ f.23.7.1 (M:) Mitochon 6.6 1.4E+02 0.01 15.5 1.9 22 127-153 8-29 (43)
6 d2axtl1 f.23.31.1 (L:1-37) Pho 5.8 2E+02 0.014 14.1 3.2 20 9-28 16-35 (37)
7 d1q90a3 f.23.23.1 (A:248-292) 2.9 4.2E+02 0.03 13.6 3.5 29 182-210 3-31 (45)
8 d1gl4a1 d.22.1.2 (A:399-631) D 2.4 2.4E+02 0.018 20.3 0.9 37 96-133 43-79 (233)
9 d2r6gf1 e.70.1.1 (F:13-260) Ma 2.3 1E+03 0.073 16.7 6.5 33 115-153 36-68 (248)
10 d1ppjd2 f.23.11.1 (D:196-241) 2.2 4.7E+02 0.035 13.4 1.7 14 49-62 13-26 (46)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=54.92 E-value=7.8 Score=17.94 Aligned_cols=20 Identities=20% Similarity=0.463 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 045242 184 IKGALMITIGCFSWAGFMVL 203 (243)
Q Consensus 184 ~~G~~~~llaal~~a~~~v~ 203 (243)
++|.+..-++++.||.|.-+
T Consensus 2 vlgli~~tl~glf~aayqqy 21 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQQY 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred eeeehHHHHHHHHHHHHHHh
Confidence 57888999999999998765
No 2
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.53 E-value=1.3e+02 Score=13.77 Aligned_cols=23 Identities=9% Similarity=0.102 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHhccCC
Q 045242 218 TALICLMGTIEGTIVALFLERGN 240 (243)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~ 240 (243)
..|.+.+++++.+-+..++-+++
T Consensus 4 i~yv~ifac~i~lfffaiffrep 26 (30)
T d2axtt1 4 ITYVFIFACIIALFFFAIFFREP 26 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCC
T ss_pred eehHHHHHHHHHHHHHHHHhcCC
Confidence 34555666655555544444444
No 3
>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}
Probab=6.91 E-value=4.9e+02 Score=19.88 Aligned_cols=49 Identities=12% Similarity=0.229 Sum_probs=28.9
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHhc
Q 045242 187 ALMITI-GCFSWAGFMVLQAITLKSYPTELSLTALICLMGTIEGTIVALFLE 237 (243)
Q Consensus 187 ~~~~ll-aal~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (243)
.+...+ +.+++-.+..+.+| . +.+|+..........|....+...++..
T Consensus 283 ~~iG~i~g~i~~~~~~~l~~~-~-~iDD~~~~~~vHg~~Gi~G~l~~glfa~ 332 (383)
T d1u7ga_ 283 LIIGVVAGLAGLWGVTMLKRL-L-RVDDPCDVFGVHGVCGIVGCIMTGIFAA 332 (383)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-H-CSCCGGGHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHhhccHHHHHHHHHHHhh-c-ccccccceEeehhhhHHHHHHHHHHhcC
Confidence 344433 44455555555444 2 3447778888888777777776665533
No 4
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=6.76 E-value=1.8e+02 Score=14.68 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=16.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH
Q 045242 69 PKMTLSIFVKILLLGLLEPTIDQNL 93 (243)
Q Consensus 69 ~~~~~~~~~~~~~~g~~~~~~~~~~ 93 (243)
+.+.+|++..++.+|..........
T Consensus 5 pDMgrR~~MNLll~G~~~~~~~g~l 29 (39)
T d1q90r_ 5 PDMNKRNIMNLILAGGAGLPITTLA 29 (39)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhccchhhhhhc
Confidence 4556788888888877764444333
No 5
>d1v54m_ f.23.7.1 (M:) Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX) {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.61 E-value=1.4e+02 Score=15.51 Aligned_cols=22 Identities=14% Similarity=0.131 Sum_probs=13.3
Q ss_pred ccccccccccccchhHHHHHHHHHHHH
Q 045242 127 EKVNFRKFHSWAKVFGTIVTVGGAMFM 153 (243)
Q Consensus 127 e~~~~~~~~~~~~~~g~~l~~~Gv~l~ 153 (243)
|+++..+ +.+|+.+++++...-
T Consensus 8 ~~ls~~E-----~aigLt~~f~~~L~P 29 (43)
T d1v54m_ 8 TPTSPKE-----QAIGLSVTFLSFLLP 29 (43)
T ss_dssp SCCCHHH-----HHHHHHHHHHHHHHH
T ss_pred CCCCHHH-----HHHHHHHHHHHHHcc
Confidence 4455554 577777777765543
No 6
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=5.79 E-value=2e+02 Score=14.08 Aligned_cols=20 Identities=10% Similarity=0.129 Sum_probs=14.4
Q ss_pred HhhHHHHHHHHHHHHHHHHH
Q 045242 9 IRAKPFLAVILLQFGYAGMS 28 (243)
Q Consensus 9 ~~~~~~~~~~~a~~~~a~~~ 28 (243)
.-.+|.+++...+++++.++
T Consensus 16 sLy~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 16 SLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 34568888888888887664
No 7
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.87 E-value=4.2e+02 Score=13.57 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=20.4
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 045242 182 SPIKGALMITIGCFSWAGFMVLQAITLKS 210 (243)
Q Consensus 182 ~~~~G~~~~llaal~~a~~~v~~k~~~~~ 210 (243)
....|.+..+.+.+.--+..++-||--++
T Consensus 3 ~Rv~gll~F~~~v~laQi~LVLKKKQfEK 31 (45)
T d1q90a3 3 ARIQGLLVFFSFVLLTQVLLVLKKKQFEK 31 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678887777777777777876665444
No 8
>d1gl4a1 d.22.1.2 (A:399-631) Domain G2 of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.41 E-value=2.4e+02 Score=20.29 Aligned_cols=37 Identities=16% Similarity=0.407 Sum_probs=30.6
Q ss_pred HhhcccChhhhhhhccchhHHHHHHHHHHhhccccccc
Q 045242 96 TGMKYTTATFTTAMANVLPAFAFLMAWIIRLEKVNFRK 133 (243)
Q Consensus 96 ~~l~~~~~~~a~~i~~~~Pi~~~il~~~~~~e~~~~~~ 133 (243)
.++...|+..+..+..+.|+.+ .++|+|-+|.-....
T Consensus 43 taIs~IP~~~G~~L~~L~~ig~-~igWlFA~e~~~a~N 79 (233)
T d1gl4a1 43 TAISTIPETVGYSLLPLAPIGG-IIGWMFAVEQDGFKN 79 (233)
T ss_dssp EEEESCCHHHHGGGTTCTHHHH-HHHHHTCEECTTCCC
T ss_pred EEccCCChhHhhhhhhhhhhcC-ceeeeEEeecCCccC
Confidence 4667788888888988999887 567999999888776
No 9
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=2.29 E-value=1e+03 Score=16.70 Aligned_cols=33 Identities=9% Similarity=-0.037 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhhccccccccccccchhHHHHHHHHHHHH
Q 045242 115 AFAFLMAWIIRLEKVNFRKFHSWAKVFGTIVTVGGAMFM 153 (243)
Q Consensus 115 i~~~il~~~~~~e~~~~~~~~~~~~~~g~~l~~~Gv~l~ 153 (243)
+.+.++.++++.+|.-+.+ .+--.+.+..+..+
T Consensus 36 ~~~~~~~~vy~s~r~~p~k------yi~PG~~~l~~Fvi 68 (248)
T d2r6gf1 36 ILSSAGLYIFANRKAYAWR------YVYPGMAGMGLFVL 68 (248)
T ss_dssp HHHHHHHHHHSSSCCTTHH------HHHHHHHHHHHHTH
T ss_pred HHHHheEEEEEccCcccee------hhhhHHHHHHHHHH
Confidence 3444444556655555542 55444444444433
No 10
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.15 E-value=4.7e+02 Score=13.38 Aligned_cols=14 Identities=7% Similarity=0.116 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHHH
Q 045242 49 HAVATIVVAPFALI 62 (243)
Q Consensus 49 ~~~~~i~l~~~~~~ 62 (243)
.++...++..++++
T Consensus 13 v~~~l~~l~~l~yy 26 (46)
T d1ppjd2 13 MLLMMGLLLPLVYA 26 (46)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
Done!