BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045244
(93 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2IBX|B Chain B, Influenza Virus (Vn1194) H5 Ha
pdb|2IBX|D Chain D, Influenza Virus (Vn1194) H5 Ha
pdb|2IBX|F Chain F, Influenza Virus (Vn1194) H5 Ha
Length = 160
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 46 EALKREIQRL-RQVYHQQNL-KKMENGASPAPTQAAEVRVSVEKEQLLNV 93
EA+ RE L R++ +NL KKME+G T AE+ V +E E+ L+
Sbjct: 64 EAVGREFNNLERRI---ENLNKKMEDGFLDVWTYNAELLVLMENERTLDF 110
>pdb|3FKU|B Chain B, Crystal Structure Of Influenza Hemagglutinin (H5) In
Complex With A Broadly Neutralizing Antibody F10
pdb|3FKU|D Chain D, Crystal Structure Of Influenza Hemagglutinin (H5) In
Complex With A Broadly Neutralizing Antibody F10
pdb|3FKU|F Chain F, Crystal Structure Of Influenza Hemagglutinin (H5) In
Complex With A Broadly Neutralizing Antibody F10
pdb|3FKU|H Chain H, Crystal Structure Of Influenza Hemagglutinin (H5) In
Complex With A Broadly Neutralizing Antibody F10
pdb|3FKU|J Chain J, Crystal Structure Of Influenza Hemagglutinin (H5) In
Complex With A Broadly Neutralizing Antibody F10
pdb|3FKU|L Chain L, Crystal Structure Of Influenza Hemagglutinin (H5) In
Complex With A Broadly Neutralizing Antibody F10
Length = 182
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 46 EALKREIQRLRQVYHQQNLKKMENGASPAPTQAAEVRVSVEKEQLLNV 93
EA+ RE L + N KKME+G T AE+ V +E E+ L+
Sbjct: 64 EAVGREFNNLERRIENLN-KKMEDGFLDVWTYNAELLVLMENERTLDF 110
>pdb|3S11|B Chain B, Crystal Structure Of H5n1 Influenza Virus Hemagglutinin,
Strain 437-10
pdb|3S11|D Chain D, Crystal Structure Of H5n1 Influenza Virus Hemagglutinin,
Strain 437-10
pdb|3S11|F Chain F, Crystal Structure Of H5n1 Influenza Virus Hemagglutinin,
Strain 437-10
pdb|3S12|B Chain B, Crystal Structure Of H5n1 Influenza Virus Hemagglutinin,
Strain Yu562 Crystal Form 1
pdb|3S13|B Chain B, Crystal Structure Of H5n1 Influenza Virus Hemagglutinin,
Strain Yu562 Crystal Form 2
Length = 182
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 46 EALKREIQRLRQVYHQQNLKKMENGASPAPTQAAEVRVSVEKEQLLNV 93
EA+ RE L + N KKME+G T AE+ V +E E+ L+
Sbjct: 64 EAVGREFNNLERRIENLN-KKMEDGFLDVWTYNAELLVLMENERTLDF 110
>pdb|3GBM|B Chain B, Crystal Structure Of Fab Cr6261 In Complex With A H5n1
Influenza Virus Hemagglutinin.
pdb|3GBM|D Chain D, Crystal Structure Of Fab Cr6261 In Complex With A H5n1
Influenza Virus Hemagglutinin.
pdb|4FQI|B Chain B, Crystal Structure Of Fab Cr9114 In Complex With A H5n1
Influenza Virus Hemagglutinin
Length = 177
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 46 EALKREIQRLRQVYHQQNLKKMENGASPAPTQAAEVRVSVEKEQLLNV 93
EA+ RE L + N KKME+G T AE+ V +E E+ L+
Sbjct: 64 EAVGREFNNLERRIENLN-KKMEDGFLDVWTYNAELLVLMENERTLDF 110
>pdb|2FK0|B Chain B, Crystal Structure Of A H5n1 Influenza Virus Hemagglutinin.
pdb|2FK0|D Chain D, Crystal Structure Of A H5n1 Influenza Virus Hemagglutinin.
pdb|2FK0|F Chain F, Crystal Structure Of A H5n1 Influenza Virus Hemagglutinin.
pdb|2FK0|H Chain H, Crystal Structure Of A H5n1 Influenza Virus Hemagglutinin.
pdb|2FK0|J Chain J, Crystal Structure Of A H5n1 Influenza Virus Hemagglutinin.
pdb|2FK0|L Chain L, Crystal Structure Of A H5n1 Influenza Virus Hemagglutinin.
pdb|2FK0|N Chain N, Crystal Structure Of A H5n1 Influenza Virus Hemagglutinin.
pdb|2FK0|P Chain P, Crystal Structure Of A H5n1 Influenza Virus Hemagglutinin.
pdb|2FK0|R Chain R, Crystal Structure Of A H5n1 Influenza Virus Hemagglutinin
Length = 181
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 46 EALKREIQRLRQVYHQQNLKKMENGASPAPTQAAEVRVSVEKEQLLNV 93
EA+ RE L + N KKME+G T AE+ V +E E+ L+
Sbjct: 64 EAVGREFNNLERRIENLN-KKMEDGFLDVWTYNAELLVLMENERTLDF 110
>pdb|2B78|A Chain A, A Putative Sam-Dependent Methyltransferase From
Streptococcus Mutans
pdb|3LDF|A Chain A, Crystal Structure Of Smu.776, A Putative Methyltransferase
Complexed With Sah
Length = 385
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 14 DHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEAL-KREIQRLRQVYHQ---QNLKKM-E 68
+HQ ++++V + R L D I D A K+E+ + + YH+ Q L+ + E
Sbjct: 264 NHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSE 323
Query: 69 NGASPAPTQAAEVRVSVEKEQL 90
NG A T AA + VS K+Q+
Sbjct: 324 NGLIIASTNAANMTVSQFKKQI 345
>pdb|2WRE|A Chain A, Structure Of H2 Japan Hemagglutinin With Human Receptor
pdb|2WRE|B Chain B, Structure Of H2 Japan Hemagglutinin With Human Receptor
pdb|2WRE|C Chain C, Structure Of H2 Japan Hemagglutinin With Human Receptor
Length = 505
Score = 25.4 bits (54), Expect = 8.0, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 46 EALKREIQRLRQVYHQQNLKKMENGASPAPTQAAEVRVSVEKEQLLN 92
EA+ +E L + N KKME+G T AE+ V +E E+ L+
Sbjct: 404 EAVGKEFSNLERRLENLN-KKMEDGFLDVWTYNAELLVLMENERTLD 449
>pdb|2WRD|A Chain A, Structure Of H2 Japan Hemagglutinin
pdb|2WRD|B Chain B, Structure Of H2 Japan Hemagglutinin
pdb|2WRD|C Chain C, Structure Of H2 Japan Hemagglutinin
Length = 505
Score = 25.4 bits (54), Expect = 8.0, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 46 EALKREIQRLRQVYHQQNLKKMENGASPAPTQAAEVRVSVEKEQLLN 92
EA+ +E L + N KKME+G T AE+ V +E E+ L+
Sbjct: 404 EAVGKEFSNLERRLENLN-KKMEDGFLDVWTYNAELLVLMENERTLD 449
>pdb|2WR7|A Chain A, The Structure Of Influenza H2 Human Singapore
Hemagglutinin With Human Receptor
pdb|2WR7|B Chain B, The Structure Of Influenza H2 Human Singapore
Hemagglutinin With Human Receptor
pdb|2WR7|C Chain C, The Structure Of Influenza H2 Human Singapore
Hemagglutinin With Human Receptor
pdb|2WRB|A Chain A, The Structure Of Influenza H2 Human Singapore
Hemagglutinin With Avian Receptor
pdb|2WRB|B Chain B, The Structure Of Influenza H2 Human Singapore
Hemagglutinin With Avian Receptor
pdb|2WRB|C Chain C, The Structure Of Influenza H2 Human Singapore
Hemagglutinin With Avian Receptor
pdb|2WRC|A Chain A, The Structure Of Influenza H2 Human Singapore
Hemagglutinin
pdb|2WRC|B Chain B, The Structure Of Influenza H2 Human Singapore
Hemagglutinin
pdb|2WRC|C Chain C, The Structure Of Influenza H2 Human Singapore
Hemagglutinin
Length = 506
Score = 25.4 bits (54), Expect = 8.0, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 46 EALKREIQRLRQVYHQQNLKKMENGASPAPTQAAEVRVSVEKEQLLN 92
EA+ +E L + N KKME+G T AE+ V +E E+ L+
Sbjct: 404 EAVGKEFSNLERRLENLN-KKMEDGFLDVWTYNAELLVLMENERTLD 449
>pdb|2WR3|A Chain A, Structure Of Influenza H2 Duck Ontario Hemagglutinin With
Avian Receptor
pdb|2WR3|B Chain B, Structure Of Influenza H2 Duck Ontario Hemagglutinin With
Avian Receptor
pdb|2WR3|C Chain C, Structure Of Influenza H2 Duck Ontario Hemagglutinin With
Avian Receptor
pdb|2WR4|A Chain A, Structure Of Influenza H2 Duck Ontario Hemagglutinin
With Human Receptor
pdb|2WR4|B Chain B, Structure Of Influenza H2 Duck Ontario Hemagglutinin
With Human Receptor
pdb|2WR4|C Chain C, Structure Of Influenza H2 Duck Ontario Hemagglutinin
With Human Receptor
pdb|2WR5|A Chain A, Structure Of Influenza H2 Duck Ontario Hemagglutinin
pdb|2WR5|B Chain B, Structure Of Influenza H2 Duck Ontario Hemagglutinin
pdb|2WR5|C Chain C, Structure Of Influenza H2 Duck Ontario Hemagglutinin
Length = 507
Score = 25.4 bits (54), Expect = 8.0, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 46 EALKREIQRLRQVYHQQNLKKMENGASPAPTQAAEVRVSVEKEQLLN 92
EA+ +E L + N KKME+G T AE+ V +E E+ L+
Sbjct: 404 EAVGKEFSNLERRLENLN-KKMEDGFLDVWTYNAELLVLMENERTLD 449
>pdb|2WR0|A Chain A, Structures Of Influenza H2 Hemagglutinins
pdb|2WR0|B Chain B, Structures Of Influenza H2 Hemagglutinins
pdb|2WR0|C Chain C, Structures Of Influenza H2 Hemagglutinins
pdb|2WR1|A Chain A, Structure Of Influenza H2 Hemagglutinin With Human
Receptor
pdb|2WR1|B Chain B, Structure Of Influenza H2 Hemagglutinin With Human
Receptor
pdb|2WR1|C Chain C, Structure Of Influenza H2 Hemagglutinin With Human
Receptor
pdb|2WR2|A Chain A, Structure Of Influenza H2 Avian Hemagglutinin With Avian
Receptor
pdb|2WR2|B Chain B, Structure Of Influenza H2 Avian Hemagglutinin With Avian
Receptor
pdb|2WR2|C Chain C, Structure Of Influenza H2 Avian Hemagglutinin With Avian
Receptor
Length = 509
Score = 25.4 bits (54), Expect = 8.0, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 46 EALKREIQRLRQVYHQQNLKKMENGASPAPTQAAEVRVSVEKEQLLN 92
EA+ +E L + N KKME+G T AE+ V +E E+ L+
Sbjct: 404 EAVGKEFSNLERRLENLN-KKMEDGFLDVWTYNAELLVLMENERTLD 449
>pdb|4FHM|B Chain B, Nup37-Nup120(Aa1-961) Complex From Schizosaccharomyces
Pombe
Length = 964
Score = 25.4 bits (54), Expect = 8.1, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 39 IFKDAHQEALKREIQRLRQVYHQQNL 64
++ Q A+ RE Q + + YH QNL
Sbjct: 872 LYSHTSQFAVLREFQEIAEKYHHQNL 897
>pdb|4GQ2|M Chain M, S. Pombe Nup120-Nup37 Complex
Length = 950
Score = 25.4 bits (54), Expect = 8.2, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 39 IFKDAHQEALKREIQRLRQVYHQQNL 64
++ Q A+ RE Q + + YH QNL
Sbjct: 870 LYSHTSQFAVLREFQEIAEKYHHQNL 895
>pdb|4FHN|B Chain B, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
pdb|4FHN|D Chain D, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 1139
Score = 25.4 bits (54), Expect = 9.3, Method: Composition-based stats.
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 39 IFKDAHQEALKREIQRLRQVYHQQNL 64
++ Q A+ RE Q + + YH QNL
Sbjct: 872 LYSHTSQFAVLREFQEIAEKYHHQNL 897
>pdb|4DZM|A Chain A, A De Novo Designed Coiled Coil Cc-Di
pdb|4DZM|B Chain B, A De Novo Designed Coiled Coil Cc-Di
Length = 33
Score = 25.0 bits (53), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 7/36 (19%)
Query: 25 SALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYH 60
+ALKQ IAAL ++ ALK EI L+Q Y+
Sbjct: 5 AALKQEIAALKKE-------NAALKXEIAALKQGYY 33
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.128 0.332
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,115,370
Number of Sequences: 62578
Number of extensions: 62842
Number of successful extensions: 321
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 313
Number of HSP's gapped (non-prelim): 25
length of query: 93
length of database: 14,973,337
effective HSP length: 60
effective length of query: 33
effective length of database: 11,218,657
effective search space: 370215681
effective search space used: 370215681
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)