BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045244
         (93 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9MA75|VIP1_ARATH Transcription factor VIP1 OS=Arabidopsis thaliana GN=VIP1 PE=1 SV=1
          Length = 341

 Score = 38.1 bits (87), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 23/57 (40%), Positives = 31/57 (54%)

Query: 2   EVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQV 58
           E + LS +V  L      LN +N  LK R+ AL Q    +DA  EAL+ E+ RL+ V
Sbjct: 232 EATTLSAQVTMLQRGTSELNTENKHLKMRLQALEQQAELRDALNEALRDELNRLKVV 288


>sp|Q69IL4|RF2A_ORYSJ Transcription factor RF2a OS=Oryza sativa subsp. japonica GN=RF2a
           PE=1 SV=1
          Length = 380

 Score = 35.8 bits (81), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 1   AEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYH 60
            E + LS ++A L      L  +NS LK R+  + Q    +DA  + LK E+QRL+    
Sbjct: 218 TEATTLSAQLALLQRDTSGLTTENSELKLRLQTMEQQVHLQDALNDTLKSEVQRLKVATG 277

Query: 61  Q 61
           Q
Sbjct: 278 Q 278


>sp|Q6S4P4|RF2B_ORYSJ Transcription factor RF2b OS=Oryza sativa subsp. japonica GN=RF2b
           PE=1 SV=1
          Length = 329

 Score = 33.9 bits (76), Expect = 0.32,   Method: Compositional matrix adjust.
 Identities = 18/56 (32%), Positives = 32/56 (57%)

Query: 1   AEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLR 56
            E + LS ++         L+ +N+ LK R+ A+ Q    +DA  +ALK+E++RL+
Sbjct: 169 TEATTLSAQLTLFQRDTTGLSAENAELKIRLQAMEQQAQLRDALNDALKQELERLK 224


>sp|Q04088|POF21_ARATH Probable transcription factor PosF21 OS=Arabidopsis thaliana
           GN=POSF21 PE=2 SV=1
          Length = 398

 Score = 32.7 bits (73), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 1   AEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYH 60
            E + LS ++  L      L V+N+ LK R+  + Q    +D   EALK EIQ L+ +  
Sbjct: 238 TEATTLSAQLTLLQRDTNGLTVENNELKLRLQTMEQQVHLQDELNEALKEEIQHLKVLTG 297

Query: 61  Q 61
           Q
Sbjct: 298 Q 298


>sp|A1AXS9|TRPB_RUTMC Tryptophan synthase beta chain OS=Ruthia magnifica subsp.
          Calyptogena magnifica GN=trpB PE=3 SV=1
          Length = 401

 Score = 29.6 bits (65), Expect = 5.6,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 23/47 (48%)

Query: 25 SALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYHQQNLKKMENGA 71
          + LK   A    D+ F    ++ LK  + R   +YH QNL K  +GA
Sbjct: 30 TELKDAYAKFKDDEDFIREFEQDLKHYVGRETPLYHAQNLSKKLDGA 76


>sp|Q8EZD6|SYM_LEPIN Methionine--tRNA ligase OS=Leptospira interrogans serogroup
           Icterohaemorrhagiae serovar Lai (strain 56601) GN=metG
           PE=3 SV=1
          Length = 715

 Score = 29.3 bits (64), Expect = 7.7,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 12/77 (15%)

Query: 7   SPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYHQQNLKK 66
           SP    LD  R+L N         I  L  + I K   ++A+K  ++  +Q  H    KK
Sbjct: 548 SPSFKDLDKNRILEN---------IKVLPYEMISKRVDEKAIKAMLEENKQSEHS---KK 595

Query: 67  MENGASPAPTQAAEVRV 83
           +E   +P P +  E+ +
Sbjct: 596 VETSENPVPEERLEISI 612


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.316    0.128    0.332 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,298,115
Number of Sequences: 539616
Number of extensions: 890062
Number of successful extensions: 5031
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 5013
Number of HSP's gapped (non-prelim): 37
length of query: 93
length of database: 191,569,459
effective HSP length: 63
effective length of query: 30
effective length of database: 157,573,651
effective search space: 4727209530
effective search space used: 4727209530
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)