Query 045244
Match_columns 93
No_of_seqs 67 out of 69
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 11:16:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045244.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045244hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14197 Cep57_CLD_2: Centroso 94.3 0.15 3.2E-06 33.2 5.2 58 1-58 5-62 (69)
2 PF06005 DUF904: Protein of un 92.6 0.67 1.5E-05 30.4 6.1 51 6-63 9-59 (72)
3 PF11629 Mst1_SARAH: C termina 89.4 1.3 2.7E-05 28.0 4.8 31 24-64 10-40 (49)
4 TIGR00219 mreC rod shape-deter 88.7 0.85 1.8E-05 35.8 4.5 41 19-62 70-110 (283)
5 PRK00888 ftsB cell division pr 88.5 1.5 3.2E-05 30.2 5.1 42 22-63 27-70 (105)
6 PRK13169 DNA replication intia 88.0 0.36 7.8E-06 34.1 1.9 32 3-34 24-55 (110)
7 KOG4370 Ral-GTPase effector RL 86.8 1.1 2.4E-05 39.2 4.5 44 9-66 414-457 (514)
8 PF06156 DUF972: Protein of un 86.6 0.41 8.9E-06 33.4 1.5 51 6-63 6-56 (107)
9 PRK10884 SH3 domain-containing 85.4 2.6 5.7E-05 32.1 5.5 41 13-53 130-170 (206)
10 PF04849 HAP1_N: HAP1 N-termin 83.3 5.6 0.00012 32.7 6.8 61 2-69 235-304 (306)
11 COG4467 Regulator of replicati 83.1 0.66 1.4E-05 33.7 1.3 32 2-33 23-54 (114)
12 PF13815 Dzip-like_N: Iguana/D 82.2 5.9 0.00013 27.2 5.7 48 9-56 67-114 (118)
13 TIGR03752 conj_TIGR03752 integ 81.7 6.5 0.00014 34.1 6.9 55 5-61 70-134 (472)
14 PF04977 DivIC: Septum formati 79.9 6.7 0.00014 23.9 4.8 31 25-55 20-50 (80)
15 PF07407 Seadorna_VP6: Seadorn 79.7 1.9 4.1E-05 36.8 3.0 20 16-35 33-52 (420)
16 PRK13922 rod shape-determining 77.5 4.6 9.9E-05 30.6 4.3 41 16-60 70-110 (276)
17 PF15294 Leu_zip: Leucine zipp 76.9 14 0.0003 30.0 7.1 54 10-63 127-180 (278)
18 KOG4196 bZIP transcription fac 75.2 14 0.00031 27.5 6.2 44 16-66 75-118 (135)
19 TIGR02449 conserved hypothetic 73.4 18 0.00039 23.6 5.7 36 4-39 3-38 (65)
20 PF08232 Striatin: Striatin fa 73.3 30 0.00066 24.6 8.2 55 14-68 17-71 (134)
21 TIGR02209 ftsL_broad cell divi 72.5 11 0.00025 23.5 4.5 41 23-63 25-65 (85)
22 TIGR02894 DNA_bind_RsfA transc 72.2 22 0.00047 27.0 6.7 46 5-57 81-132 (161)
23 PF08614 ATG16: Autophagy prot 71.3 26 0.00056 25.7 6.8 55 11-65 112-166 (194)
24 PF15058 Speriolin_N: Sperioli 70.8 7.4 0.00016 30.6 4.0 38 12-49 9-46 (200)
25 KOG3119 Basic region leucine z 68.5 16 0.00035 28.6 5.5 39 24-62 217-255 (269)
26 PF14916 CCDC92: Coiled-coil d 68.1 15 0.00032 23.8 4.4 34 27-60 1-38 (60)
27 COG3074 Uncharacterized protei 67.3 15 0.00032 25.3 4.4 42 18-59 21-62 (79)
28 PF14662 CCDC155: Coiled-coil 67.0 28 0.0006 27.2 6.4 50 4-57 25-74 (193)
29 PF05812 Herpes_BLRF2: Herpesv 66.1 4 8.6E-05 29.6 1.6 20 16-35 11-30 (118)
30 PF00170 bZIP_1: bZIP transcri 65.9 28 0.0006 21.2 6.6 34 28-61 25-58 (64)
31 PHA03155 hypothetical protein; 65.8 4.5 9.8E-05 29.4 1.8 23 11-33 11-33 (115)
32 PTZ00007 (NAP-L) nucleosome as 65.7 28 0.00061 28.7 6.6 60 3-62 15-74 (337)
33 PF07716 bZIP_2: Basic region 65.0 27 0.00059 20.8 5.1 29 28-56 24-52 (54)
34 PHA03162 hypothetical protein; 65.0 4.7 0.0001 30.0 1.8 19 13-31 18-36 (135)
35 PF07989 Microtub_assoc: Micro 64.9 31 0.00067 22.6 5.5 44 18-61 10-68 (75)
36 PF12711 Kinesin-relat_1: Kine 64.2 27 0.0006 23.9 5.3 39 23-61 25-69 (86)
37 PF14662 CCDC155: Coiled-coil 64.1 15 0.00033 28.6 4.5 54 2-55 2-55 (193)
38 PRK10803 tol-pal system protei 63.5 31 0.00067 26.7 6.2 51 7-57 39-89 (263)
39 TIGR03495 phage_LysB phage lys 60.9 57 0.0012 23.8 6.8 68 4-71 22-91 (135)
40 TIGR01730 RND_mfp RND family e 60.5 28 0.0006 25.6 5.2 45 15-59 50-94 (322)
41 PF00038 Filament: Intermediat 60.1 60 0.0013 24.6 7.1 61 3-63 218-282 (312)
42 PF12808 Mto2_bdg: Micro-tubul 59.5 25 0.00054 22.1 4.1 31 20-57 20-50 (52)
43 PF11559 ADIP: Afadin- and alp 58.0 61 0.0013 22.5 6.8 45 6-50 57-101 (151)
44 KOG3119 Basic region leucine z 57.7 25 0.00054 27.6 4.8 34 28-61 214-247 (269)
45 PF00038 Filament: Intermediat 55.6 84 0.0018 23.8 7.2 59 5-63 199-257 (312)
46 KOG4571 Activating transcripti 55.5 18 0.0004 29.8 3.8 28 19-60 259-286 (294)
47 PF10198 Ada3: Histone acetylt 54.8 51 0.0011 23.6 5.6 51 4-54 36-89 (131)
48 PRK00888 ftsB cell division pr 54.5 19 0.0004 24.7 3.2 33 5-37 31-63 (105)
49 COG1792 MreC Cell shape-determ 54.4 28 0.0006 27.5 4.6 39 18-60 69-107 (284)
50 TIGR02209 ftsL_broad cell divi 53.9 20 0.00044 22.4 3.1 38 6-43 29-66 (85)
51 PF02183 HALZ: Homeobox associ 53.8 47 0.001 19.9 5.0 33 26-58 9-41 (45)
52 PF08606 Prp19: Prp19/Pso4-lik 53.8 64 0.0014 21.5 5.8 55 3-57 3-57 (70)
53 PRK14872 rod shape-determining 52.9 24 0.00052 29.2 4.2 41 15-59 57-97 (337)
54 PF05557 MAD: Mitotic checkpoi 52.1 72 0.0016 27.8 7.1 51 9-59 511-582 (722)
55 PF08172 CASP_C: CASP C termin 52.1 36 0.00079 26.7 4.9 31 27-57 91-121 (248)
56 TIGR03142 cytochro_ccmI cytoch 51.9 24 0.00053 24.0 3.5 29 26-54 40-71 (117)
57 PF07227 DUF1423: Protein of u 50.9 23 0.00051 30.7 3.9 46 20-65 341-393 (446)
58 PF07216 LcrG: LcrG protein; 50.6 11 0.00025 26.5 1.7 25 36-61 50-74 (93)
59 KOG4343 bZIP transcription fac 50.1 16 0.00034 33.1 2.8 30 7-36 308-337 (655)
60 PF04340 DUF484: Protein of un 47.6 71 0.0015 23.6 5.6 42 9-50 41-82 (225)
61 smart00338 BRLZ basic region l 47.6 63 0.0014 19.6 5.6 31 29-59 26-56 (65)
62 PF04999 FtsL: Cell division p 45.8 28 0.0006 22.6 2.9 38 25-62 38-75 (97)
63 PF14197 Cep57_CLD_2: Centroso 45.6 82 0.0018 20.3 6.0 32 21-52 4-35 (69)
64 TIGR02573 LcrG_PcrG type III s 45.2 16 0.00034 25.7 1.7 24 38-62 49-72 (90)
65 PF00170 bZIP_1: bZIP transcri 43.9 37 0.0008 20.6 3.1 25 11-35 29-53 (64)
66 PF12711 Kinesin-relat_1: Kine 43.0 49 0.0011 22.7 3.8 39 18-58 47-85 (86)
67 PRK15422 septal ring assembly 42.8 64 0.0014 22.1 4.4 44 17-60 20-63 (79)
68 KOG3650 Predicted coiled-coil 42.6 27 0.00059 25.5 2.7 30 5-34 74-103 (120)
69 TIGR01843 type_I_hlyD type I s 41.3 1.5E+02 0.0032 22.8 6.7 46 15-60 144-189 (423)
70 PF05812 Herpes_BLRF2: Herpesv 41.2 84 0.0018 22.8 5.0 49 42-91 2-50 (118)
71 PF11559 ADIP: Afadin- and alp 41.0 1.2E+02 0.0026 21.0 6.4 57 6-62 64-127 (151)
72 PF11544 Spc42p: Spindle pole 40.5 65 0.0014 21.8 4.1 11 23-33 6-16 (76)
73 PF11365 DUF3166: Protein of u 39.1 96 0.0021 21.6 4.9 37 25-61 4-47 (96)
74 PF00769 ERM: Ezrin/radixin/mo 39.0 1.4E+02 0.0031 23.0 6.3 43 19-61 79-121 (246)
75 PF13815 Dzip-like_N: Iguana/D 38.9 84 0.0018 21.5 4.6 16 47-62 91-106 (118)
76 TIGR03752 conj_TIGR03752 integ 38.7 1.3E+02 0.0028 26.4 6.5 53 4-56 62-115 (472)
77 PF07407 Seadorna_VP6: Seadorn 38.6 75 0.0016 27.4 5.1 30 10-39 34-63 (420)
78 PF12795 MscS_porin: Mechanose 38.5 1.3E+02 0.0029 22.5 5.9 21 12-32 154-174 (240)
79 COG2919 Septum formation initi 37.0 60 0.0013 22.4 3.6 16 19-34 68-83 (117)
80 PRK15030 multidrug efflux syst 36.3 1E+02 0.0022 24.7 5.2 47 15-61 89-135 (397)
81 PF08232 Striatin: Striatin fa 35.8 31 0.00067 24.5 2.1 34 2-35 26-59 (134)
82 PF00956 NAP: Nucleosome assem 35.7 1.5E+02 0.0033 22.2 5.9 36 28-63 1-36 (244)
83 PF06548 Kinesin-related: Kine 35.6 1.5E+02 0.0032 26.3 6.4 57 6-62 390-474 (488)
84 PF13758 Prefoldin_3: Prefoldi 35.6 30 0.00064 24.4 1.9 19 39-57 8-26 (99)
85 PF01166 TSC22: TSC-22/dip/bun 35.2 24 0.00052 23.1 1.3 32 23-61 15-46 (59)
86 PF05837 CENP-H: Centromere pr 35.2 1.4E+02 0.0031 20.2 5.5 57 6-63 15-71 (106)
87 PTZ00454 26S protease regulato 34.5 1.4E+02 0.003 24.6 5.9 36 21-56 14-49 (398)
88 PRK00846 hypothetical protein; 34.0 1.5E+02 0.0032 19.9 7.1 33 20-52 4-36 (77)
89 PF14988 DUF4515: Domain of un 33.6 1.9E+02 0.0042 22.0 6.2 48 10-57 151-198 (206)
90 TIGR00998 8a0101 efflux pump m 33.6 1.9E+02 0.0042 21.8 6.2 20 41-60 120-139 (334)
91 PF07106 TBPIP: Tat binding pr 33.4 80 0.0017 22.4 3.9 55 3-57 74-130 (169)
92 KOG2391 Vacuolar sorting prote 33.0 2.3E+02 0.0049 24.3 7.0 72 3-82 227-298 (365)
93 COG2433 Uncharacterized conser 32.0 97 0.0021 28.3 4.9 53 7-59 428-490 (652)
94 KOG4301 Beta-dystrobrevin [Cyt 31.9 52 0.0011 28.5 3.1 50 4-57 383-432 (434)
95 PRK10884 SH3 domain-containing 31.9 1.6E+02 0.0034 22.5 5.5 15 42-56 138-152 (206)
96 PF05258 DUF721: Protein of un 31.7 3.4 7.4E-05 25.2 -3.0 33 11-44 44-76 (89)
97 PRK09859 multidrug efflux syst 31.5 1.4E+02 0.003 23.6 5.3 46 16-61 86-131 (385)
98 PF08826 DMPK_coil: DMPK coile 30.7 1.5E+02 0.0032 19.0 5.2 28 22-56 25-52 (61)
99 PF12017 Tnp_P_element: Transp 30.7 1.8E+02 0.0039 22.8 5.7 50 18-70 14-66 (236)
100 PRK09578 periplasmic multidrug 30.6 1.5E+02 0.0033 23.4 5.3 46 15-60 87-132 (385)
101 PF05511 ATP-synt_F6: Mitochon 30.5 60 0.0013 22.9 2.8 17 44-60 66-82 (99)
102 PF13851 GAS: Growth-arrest sp 30.3 2.4E+02 0.0051 21.2 6.1 31 7-37 92-122 (201)
103 PF15294 Leu_zip: Leucine zipp 29.9 34 0.00074 27.8 1.7 38 19-56 83-138 (278)
104 PF09728 Taxilin: Myosin-like 27.3 93 0.002 24.9 3.7 59 4-62 117-179 (309)
105 KOG3156 Uncharacterized membra 27.3 1.9E+02 0.004 23.2 5.3 36 26-61 105-141 (220)
106 KOG0289 mRNA splicing factor [ 26.9 1.9E+02 0.0041 25.8 5.7 56 3-58 66-121 (506)
107 KOG4634 Mitochondrial F1F0-ATP 26.8 66 0.0014 23.1 2.5 17 44-60 61-77 (105)
108 PF07334 IFP_35_N: Interferon- 26.6 80 0.0017 21.3 2.7 14 21-34 6-19 (76)
109 PF13600 DUF4140: N-terminal d 25.8 1.9E+02 0.0042 18.7 4.9 30 25-54 73-102 (104)
110 KOG4674 Uncharacterized conser 25.7 1.1E+02 0.0023 31.1 4.4 53 4-56 1267-1341(1822)
111 COG5570 Uncharacterized small 25.5 52 0.0011 21.4 1.6 11 47-57 44-54 (57)
112 PF00631 G-gamma: GGL domain; 25.3 67 0.0014 20.0 2.1 12 46-57 5-16 (68)
113 PF11471 Sugarporin_N: Maltopo 24.8 1.8E+02 0.0039 18.4 4.0 23 23-47 26-48 (60)
114 PF04111 APG6: Autophagy prote 24.7 2.8E+02 0.0062 22.2 6.0 48 9-56 44-91 (314)
115 PF08317 Spc7: Spc7 kinetochor 24.7 2.4E+02 0.0052 22.3 5.5 45 15-59 156-200 (325)
116 KOG2077 JNK/SAPK-associated pr 24.3 3.8E+02 0.0082 25.1 7.3 47 20-66 334-380 (832)
117 PF05266 DUF724: Protein of un 24.0 2.6E+02 0.0055 21.1 5.3 35 26-60 135-169 (190)
118 PF05529 Bap31: B-cell recepto 23.5 2.2E+02 0.0047 20.5 4.8 14 41-54 173-186 (192)
119 PRK11556 multidrug efflux syst 23.4 2.2E+02 0.0048 23.1 5.2 44 17-60 113-156 (415)
120 PF13093 FTA4: Kinetochore com 23.2 1.7E+02 0.0037 22.4 4.3 12 47-58 195-206 (213)
121 PHA00671 hypothetical protein 23.2 3.1E+02 0.0068 20.2 6.4 41 20-60 20-60 (135)
122 PF13118 DUF3972: Protein of u 23.1 2E+02 0.0043 21.1 4.4 33 18-57 88-120 (126)
123 smart00340 HALZ homeobox assoc 23.0 84 0.0018 19.5 2.1 15 44-58 20-34 (44)
124 KOG2129 Uncharacterized conser 22.9 2.6E+02 0.0057 25.0 5.8 54 5-58 174-268 (552)
125 KOG0977 Nuclear envelope prote 22.7 2.2E+02 0.0047 25.4 5.3 44 19-62 152-195 (546)
126 PF05557 MAD: Mitotic checkpoi 22.5 2.3E+02 0.005 24.8 5.4 47 18-64 569-634 (722)
127 PF07889 DUF1664: Protein of u 22.0 3E+02 0.0064 19.8 5.1 45 13-57 52-96 (126)
128 PF12001 DUF3496: Domain of un 21.9 3E+02 0.0066 19.6 5.1 38 24-61 2-40 (111)
129 PF09730 BicD: Microtubule-ass 21.9 1.4E+02 0.003 27.3 4.1 40 12-55 94-133 (717)
130 PF05082 Rop-like: Rop-like; 21.8 1.2E+02 0.0025 20.0 2.8 18 45-62 4-21 (66)
131 PF05911 DUF869: Plant protein 21.3 2.7E+02 0.0058 25.7 5.8 51 1-58 134-205 (769)
132 PF15619 Lebercilin: Ciliary p 21.3 2.6E+02 0.0056 21.1 4.9 36 22-57 150-185 (194)
133 PLN03188 kinesin-12 family pro 21.0 3.3E+02 0.0072 27.0 6.5 57 5-61 1159-1243(1320)
134 KOG4673 Transcription factor T 20.7 2.4E+02 0.0051 26.9 5.3 18 15-32 704-721 (961)
135 KOG2264 Exostosin EXT1L [Signa 20.3 3.3E+02 0.0072 25.6 6.1 51 4-54 89-139 (907)
136 PF06305 DUF1049: Protein of u 20.3 1.4E+02 0.0031 17.7 2.8 10 47-56 59-68 (68)
137 PF11932 DUF3450: Protein of u 20.1 3.9E+02 0.0084 20.1 6.7 29 29-57 42-70 (251)
138 PF10174 Cast: RIM-binding pro 20.1 2.6E+02 0.0056 25.8 5.4 40 20-59 313-352 (775)
No 1
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=94.34 E-value=0.15 Score=33.19 Aligned_cols=58 Identities=21% Similarity=0.255 Sum_probs=52.0
Q ss_pred CcccchhhHHHHHhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 1 AEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQV 58 (93)
Q Consensus 1 tE~s~LSaqv~~L~qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~l 58 (93)
+|+++|-.++..+.++...--.+|+.|..-=.+.......+...+..|+.|++.|+.-
T Consensus 5 a~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 5 AEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888899999999999999999999988888888889999999999999999864
No 2
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=92.63 E-value=0.67 Score=30.39 Aligned_cols=51 Identities=25% Similarity=0.325 Sum_probs=39.6
Q ss_pred hhhHHHHHhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 6 LSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYHQQN 63 (93)
Q Consensus 6 LSaqv~~L~qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly~QQq 63 (93)
|-.+|.-+--.-..|-+||..||.+-.++. -.++.|+.|.++||.-+...+
T Consensus 9 LE~ki~~aveti~~Lq~e~eeLke~n~~L~-------~e~~~L~~en~~L~~e~~~~~ 59 (72)
T PF06005_consen 9 LEEKIQQAVETIALLQMENEELKEKNNELK-------EENEELKEENEQLKQERNAWQ 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH-------HHHHHHHHHHHHHHHHHHHHH
Confidence 445555555666788999999999988888 678999999999997665543
No 3
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name. In the Sav (Salvador) and Hpo (Hippo) families, the SARAH domain mediates signal transduction from Hpo via the Sav scaffolding protein to the downstream component Wts (Warts); the phosphorylation of Wts by Hpo triggers cell cycle arrest and apoptosis by down-regulating cyclin E, Diap 1 and other targets []. The SARAH domain is also involved in dimerisation, as in the human Hpo orthologue, Mst1, which homodimerises via its C-terminal SARAH domain. The SARAH domain is found associated with other domains, such as protein kinase domains, WW/rsp5/WWP domain (IPR001202 from INTERPRO), C1 domain (IPR002219 from INTERPRO), LIM domain (IPR001781 from INTERPRO), or the Ras-associating (RA) domain (IPR000159 from INTERPRO).; GO: 0004674 protein serine/threonine kinase activity; PDB: 2JO8_A.
Probab=89.43 E-value=1.3 Score=28.01 Aligned_cols=31 Identities=35% Similarity=0.590 Sum_probs=25.4
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 24 NSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYHQQNL 64 (93)
Q Consensus 24 N~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly~QQq~ 64 (93)
-.+|.+||++|- -.+++||+.||..|++..+
T Consensus 10 ~~eL~~rl~~LD----------~~ME~Eieelr~RY~~KRq 40 (49)
T PF11629_consen 10 YEELQQRLASLD----------PEMEQEIEELRQRYQAKRQ 40 (49)
T ss_dssp HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC----------HHHHHHHHHHHHHHHHhhc
Confidence 357888888875 4689999999999998765
No 4
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=88.68 E-value=0.85 Score=35.80 Aligned_cols=41 Identities=27% Similarity=0.319 Sum_probs=31.1
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 19 LLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYHQQ 62 (93)
Q Consensus 19 ~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly~QQ 62 (93)
-|--||..||.+++.+.++... ..+.+++|-+|||.+.+=.
T Consensus 70 ~l~~EN~~Lr~e~~~l~~~~~~---~~~~l~~EN~rLr~LL~~~ 110 (283)
T TIGR00219 70 NLEYENYKLRQELLKKNQQLEI---LTQNLKQENVRLRELLNSP 110 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhcCc
Confidence 4678999999999988444332 2345999999999987654
No 5
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=88.50 E-value=1.5 Score=30.18 Aligned_cols=42 Identities=21% Similarity=0.222 Sum_probs=34.9
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Q 045244 22 VDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQ--VYHQQN 63 (93)
Q Consensus 22 ~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~--ly~QQq 63 (93)
.....++++++.+.++---..+.|+.|++||.+|+. -|-...
T Consensus 27 ~~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~ 70 (105)
T PRK00888 27 LDYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEER 70 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHH
Confidence 356789999999999988889999999999999987 344433
No 6
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=88.00 E-value=0.36 Score=34.12 Aligned_cols=32 Identities=25% Similarity=0.419 Sum_probs=17.3
Q ss_pred ccchhhHHHHHhhhhhhhccccHHHHHHHHHH
Q 045244 3 VSVLSPRVAFLDHQRLLLNVDNSALKQRIAAL 34 (93)
Q Consensus 3 ~s~LSaqv~~L~qq~~~Ls~EN~~LKqRL~aL 34 (93)
...|...|..+--.|..|.+||..||.||..+
T Consensus 24 l~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 24 LGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555555555555555544
No 7
>KOG4370 consensus Ral-GTPase effector RLIP76 [Signal transduction mechanisms]
Probab=86.85 E-value=1.1 Score=39.16 Aligned_cols=44 Identities=23% Similarity=0.264 Sum_probs=37.8
Q ss_pred HHHHHhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 9 RVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYHQQNLKK 66 (93)
Q Consensus 9 qv~~L~qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly~QQq~~~ 66 (93)
-+.+|++++-.|--.|++|+||++. ++.+|-+||++|.++|..+
T Consensus 414 ~le~Lq~Q~eeL~e~~n~l~qrI~e--------------er~~v~~lkql~~~~q~e~ 457 (514)
T KOG4370|consen 414 ILELLQRQNEELEEKVNHLNQRIAE--------------ERERVIELKQLVNLLQEEN 457 (514)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHhhcc
Confidence 4678999999999999999999975 4678999999999987543
No 8
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=86.61 E-value=0.41 Score=33.39 Aligned_cols=51 Identities=24% Similarity=0.266 Sum_probs=29.4
Q ss_pred hhhHHHHHhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 6 LSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYHQQN 63 (93)
Q Consensus 6 LSaqv~~L~qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly~QQq 63 (93)
|-.+|.-+..+-..|.-+=.+||..+..|-. +|..|+-|-+.||..-.+-.
T Consensus 6 l~~~l~~le~~l~~l~~~~~~LK~~~~~l~E-------EN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 6 LFDRLDQLEQQLGQLLEELEELKKQLQELLE-------ENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHh
Confidence 3445555555555555555666666665543 35666666666666655543
No 9
>PRK10884 SH3 domain-containing protein; Provisional
Probab=85.41 E-value=2.6 Score=32.15 Aligned_cols=41 Identities=17% Similarity=0.110 Sum_probs=20.3
Q ss_pred HhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 13 LDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQ 53 (93)
Q Consensus 13 L~qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEie 53 (93)
.+..-.-|.-||..|+..++.+..+...-.++++.+++.+.
T Consensus 130 ~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~~~ 170 (206)
T PRK10884 130 SDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRTII 170 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333345555555555555555554444445555544443
No 10
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=83.26 E-value=5.6 Score=32.67 Aligned_cols=61 Identities=28% Similarity=0.480 Sum_probs=49.1
Q ss_pred cccchhhHHHHHhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhhC
Q 045244 2 EVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVY---------HQQNLKKMEN 69 (93)
Q Consensus 2 E~s~LSaqv~~L~qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly---------~QQq~~~~~~ 69 (93)
|++.|-++|.-+++.--.+++||-.|.+.|.+. |++++. |..|+.-|+..| -|.+.|+..+
T Consensus 235 EIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~s------ke~Q~~-L~aEL~elqdkY~E~~~mL~EaQEElk~lR~ 304 (306)
T PF04849_consen 235 EITSLLSQIVDLQQRCKQLAAENEELQQHLQAS------KESQRQ-LQAELQELQDKYAECMAMLHEAQEELKTLRK 304 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH------HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 678899999999999999999999999999875 455544 788888888888 4566665443
No 11
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=83.06 E-value=0.66 Score=33.67 Aligned_cols=32 Identities=22% Similarity=0.379 Sum_probs=24.3
Q ss_pred cccchhhHHHHHhhhhhhhccccHHHHHHHHH
Q 045244 2 EVSVLSPRVAFLDHQRLLLNVDNSALKQRIAA 33 (93)
Q Consensus 2 E~s~LSaqv~~L~qq~~~Ls~EN~~LKqRL~a 33 (93)
|.+.|-..+.++--.|..|.+||..||-||.-
T Consensus 23 el~~lK~~l~~lvEEN~~L~lENe~LR~RL~~ 54 (114)
T COG4467 23 ELGGLKQHLGSLVEENTALRLENEKLRERLGE 54 (114)
T ss_pred HHHHHHHHHHHHHHhhHHHHhhHHHHHHHhCC
Confidence 45566667777777888888888888888876
No 12
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=82.24 E-value=5.9 Score=27.19 Aligned_cols=48 Identities=23% Similarity=0.320 Sum_probs=34.3
Q ss_pred HHHHHhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 9 RVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLR 56 (93)
Q Consensus 9 qv~~L~qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk 56 (93)
-|.||.+-.-.|.-.+..|+.+++++.++.---......++.|+..||
T Consensus 67 ~ieYLl~~q~~L~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~k~lk 114 (118)
T PF13815_consen 67 SIEYLLHCQEYLSSQLEQLEERLQELQQEIEKLKQKLKKQKEEIKKLK 114 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888888888888888888888877665544445555555665554
No 13
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=81.71 E-value=6.5 Score=34.12 Aligned_cols=55 Identities=31% Similarity=0.369 Sum_probs=35.0
Q ss_pred chhhHHHHHhhhhhhhccccHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Q 045244 5 VLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDA----------HQEALKREIQRLRQVYHQ 61 (93)
Q Consensus 5 ~LSaqv~~L~qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda----------~~EaLkkEieRLk~ly~Q 61 (93)
.+-.++.-+..+|-.|--||..||+|..++.+. |..+ +.+.|+.|+.+++.+..+
T Consensus 70 ~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~--i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~ 134 (472)
T TIGR03752 70 ELRKRLAKLISENEALKAENERLQKREQSIDQQ--IQQAVQSETQELTKEIEQLKSERQQLQGLIDQ 134 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH--HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566777778888888888888877776553 3332 345566666666555544
No 14
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=79.90 E-value=6.7 Score=23.85 Aligned_cols=31 Identities=39% Similarity=0.429 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 25 SALKQRIAALAQDKIFKDAHQEALKREIQRL 55 (93)
Q Consensus 25 ~~LKqRL~aL~Qe~~lKda~~EaLkkEieRL 55 (93)
..+++.++.+..+.---...++.|+.|+++|
T Consensus 20 ~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 20 YQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4677777777777777778888888888888
No 15
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=79.73 E-value=1.9 Score=36.82 Aligned_cols=20 Identities=25% Similarity=0.424 Sum_probs=10.7
Q ss_pred hhhhhccccHHHHHHHHHHH
Q 045244 16 QRLLLNVDNSALKQRIAALA 35 (93)
Q Consensus 16 q~~~Ls~EN~~LKqRL~aL~ 35 (93)
++.+|.+||..||.....|.
T Consensus 33 e~~aLr~EN~~LKkEN~~Lk 52 (420)
T PF07407_consen 33 ENFALRMENHSLKKENNDLK 52 (420)
T ss_pred hhhhHHHHhHHHHHHHHHHH
Confidence 45556666666655444443
No 16
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=77.49 E-value=4.6 Score=30.62 Aligned_cols=41 Identities=27% Similarity=0.336 Sum_probs=31.2
Q ss_pred hhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 16 QRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYH 60 (93)
Q Consensus 16 q~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly~ 60 (93)
...-|..||..||.+++.|+.+.. ..+.+++|-+|||.+.+
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~----~~~~l~~en~~L~~lL~ 110 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQ----ELEQLEAENARLRELLN 110 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhc
Confidence 445677899999999988876543 44678899999998654
No 17
>PF15294 Leu_zip: Leucine zipper
Probab=76.86 E-value=14 Score=30.00 Aligned_cols=54 Identities=19% Similarity=0.270 Sum_probs=47.3
Q ss_pred HHHHhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 10 VAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYHQQN 63 (93)
Q Consensus 10 v~~L~qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly~QQq 63 (93)
.+.|......|..||..||-||.+++...-+-=-....|+..+..|+-.-+-+.
T Consensus 127 ~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~~~~~~~ 180 (278)
T PF15294_consen 127 SELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQDEQGDQK 180 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 466889999999999999999999999999888889999999999998555544
No 18
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=75.17 E-value=14 Score=27.51 Aligned_cols=44 Identities=20% Similarity=0.397 Sum_probs=32.4
Q ss_pred hhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 16 QRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYHQQNLKK 66 (93)
Q Consensus 16 q~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly~QQq~~~ 66 (93)
|.-.|-.+|..|.+.+..|.++ +..+..|+.-+|..|.+=+.--
T Consensus 75 Qk~eLE~~k~~L~qqv~~L~~e-------~s~~~~E~da~k~k~e~l~~~~ 118 (135)
T KOG4196|consen 75 QKHELEKEKAELQQQVEKLKEE-------NSRLRRELDAYKSKYEALQNSA 118 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhh
Confidence 4456777888888888777654 6788888888888888755443
No 19
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=73.42 E-value=18 Score=23.62 Aligned_cols=36 Identities=17% Similarity=0.200 Sum_probs=31.2
Q ss_pred cchhhHHHHHhhhhhhhccccHHHHHHHHHHHHHHH
Q 045244 4 SVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKI 39 (93)
Q Consensus 4 s~LSaqv~~L~qq~~~Ls~EN~~LKqRL~aL~Qe~~ 39 (93)
..|..+|+-|-+.---|.-||..|+++++++..+-.
T Consensus 3 ~~Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~ 38 (65)
T TIGR02449 3 QALAAQVEHLLEYLERLKSENRLLRAQEKTWREERA 38 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888889999999999999999987754
No 20
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=73.29 E-value=30 Score=24.57 Aligned_cols=55 Identities=24% Similarity=0.337 Sum_probs=46.6
Q ss_pred hhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045244 14 DHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYHQQNLKKME 68 (93)
Q Consensus 14 ~qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly~QQq~~~~~ 68 (93)
.++++.-.+|=.+||-||+.|+=+..=-+..++.|.+-|.-|-.+-.|.--|.-.
T Consensus 17 ErdR~~WeiERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE~aLkqER~k~~~ 71 (134)
T PF08232_consen 17 ERDRNQWEIERAEMKARIAFLEGERRGQENLKKDLKRRIKMLEYALKQERAKYKK 71 (134)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4788999999999999999999999988899988888888887777777666433
No 21
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=72.46 E-value=11 Score=23.54 Aligned_cols=41 Identities=12% Similarity=0.108 Sum_probs=32.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 23 DNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYHQQN 63 (93)
Q Consensus 23 EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly~QQq 63 (93)
....+...++.+.++.--....++.|+.|+.+|..-..=+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~~rIe~ 65 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSRHERIEK 65 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 45677888888888888889999999999999876544443
No 22
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=72.25 E-value=22 Score=27.02 Aligned_cols=46 Identities=30% Similarity=0.534 Sum_probs=31.5
Q ss_pred chhhHHHHHhhhhh------hhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 5 VLSPRVAFLDHQRL------LLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQ 57 (93)
Q Consensus 5 ~LSaqv~~L~qq~~------~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ 57 (93)
+|..=|.||+.-.. .|..||..|+..++.|.+. ++.|++|++.|..
T Consensus 81 tl~~vI~fLq~l~~~~~~~~~~~~e~~~l~~e~~~l~~~-------~e~Le~e~~~L~~ 132 (161)
T TIGR02894 81 TLQDVISFLQNLKTTNPSDQALQKENERLKNQNESLQKR-------NEELEKELEKLRQ 132 (161)
T ss_pred CHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 46667888876543 4668999999888888765 4555555555543
No 23
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=71.34 E-value=26 Score=25.67 Aligned_cols=55 Identities=20% Similarity=0.221 Sum_probs=44.9
Q ss_pred HHHhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 11 AFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYHQQNLK 65 (93)
Q Consensus 11 ~~L~qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly~QQq~~ 65 (93)
......-..|..++..|+.++..+..+-.-|+..++.|+.|+.-|..-|.....+
T Consensus 112 ~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k 166 (194)
T PF08614_consen 112 SEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEK 166 (194)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444567889999999999999999999999999999999999988875543
No 24
>PF15058 Speriolin_N: Speriolin N terminus
Probab=70.79 E-value=7.4 Score=30.57 Aligned_cols=38 Identities=29% Similarity=0.242 Sum_probs=30.6
Q ss_pred HHhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 12 FLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALK 49 (93)
Q Consensus 12 ~L~qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLk 49 (93)
-+.|+.--|=-||.+||.++.-|...+.+|.|+-|+--
T Consensus 9 GlrhqierLv~ENeeLKKlVrLirEN~eLksaL~ea~~ 46 (200)
T PF15058_consen 9 GLRHQIERLVRENEELKKLVRLIRENHELKSALGEACA 46 (200)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 35677777889999999999999999988888555543
No 25
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=68.46 E-value=16 Score=28.61 Aligned_cols=39 Identities=26% Similarity=0.451 Sum_probs=26.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 24 NSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYHQQ 62 (93)
Q Consensus 24 N~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly~QQ 62 (93)
+.++++|+..|+.+...=....+.|++|+.-||.++.|-
T Consensus 217 ~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~ 255 (269)
T KOG3119|consen 217 EDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQL 255 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356667777776666666666677777777777776654
No 26
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=68.10 E-value=15 Score=23.82 Aligned_cols=34 Identities=26% Similarity=0.494 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHH-HH---HHHHHHHHHHHHHH
Q 045244 27 LKQRIAALAQDKIFKDAH-QE---ALKREIQRLRQVYH 60 (93)
Q Consensus 27 LKqRL~aL~Qe~~lKda~-~E---aLkkEieRLk~ly~ 60 (93)
|..|+.++++.-.|-.-+ .. .|-.||+|||..-.
T Consensus 1 l~~qv~s~e~~i~FLq~eH~~tL~~LH~EIe~Lq~~~~ 38 (60)
T PF14916_consen 1 LEQQVQSLEKSILFLQQEHAQTLKGLHAEIERLQKRNK 38 (60)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 456777877766554333 33 35689999987544
No 27
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.28 E-value=15 Score=25.26 Aligned_cols=42 Identities=29% Similarity=0.395 Sum_probs=35.9
Q ss_pred hhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 18 LLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVY 59 (93)
Q Consensus 18 ~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly 59 (93)
.+|-||=-+||-+=.+|.|+..--....|+|++|-+.||.-.
T Consensus 21 ~LLQmEieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~ 62 (79)
T COG3074 21 TLLQMEIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQ 62 (79)
T ss_pred HHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999998877778899999998887643
No 28
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=66.99 E-value=28 Score=27.16 Aligned_cols=50 Identities=20% Similarity=0.271 Sum_probs=29.1
Q ss_pred cchhhHHHHHhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 4 SVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQ 57 (93)
Q Consensus 4 s~LSaqv~~L~qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ 57 (93)
+.|-..|.-++.-+.-|.-|+..|+..+.++.|-..+- .+++.|++.||.
T Consensus 25 ~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~a----K~l~eEledLk~ 74 (193)
T PF14662_consen 25 AKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKA----KALEEELEDLKT 74 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 34445556666666667777777777777665444443 235555555554
No 29
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=66.10 E-value=4 Score=29.57 Aligned_cols=20 Identities=25% Similarity=0.376 Sum_probs=13.7
Q ss_pred hhhhhccccHHHHHHHHHHH
Q 045244 16 QRLLLNVDNSALKQRIAALA 35 (93)
Q Consensus 16 q~~~Ls~EN~~LKqRL~aL~ 35 (93)
+-.-|.|||++||.+|-.-.
T Consensus 11 eL~kLqmENk~LKkkl~~~~ 30 (118)
T PF05812_consen 11 ELQKLQMENKALKKKLRQSV 30 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHccC
Confidence 33457788888888775544
No 30
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=65.93 E-value=28 Score=21.21 Aligned_cols=34 Identities=26% Similarity=0.383 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 28 KQRIAALAQDKIFKDAHQEALKREIQRLRQVYHQ 61 (93)
Q Consensus 28 KqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly~Q 61 (93)
|..+..|+...-.-...++.|++++..|+..+..
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~ 58 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKKELEQLKKEIQS 58 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555556666666666666655443
No 31
>PHA03155 hypothetical protein; Provisional
Probab=65.82 E-value=4.5 Score=29.37 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=16.4
Q ss_pred HHHhhhhhhhccccHHHHHHHHH
Q 045244 11 AFLDHQRLLLNVDNSALKQRIAA 33 (93)
Q Consensus 11 ~~L~qq~~~Ls~EN~~LKqRL~a 33 (93)
+=|.-.-.-|.|||++||.+|-+
T Consensus 11 EeLaaeL~kL~~ENK~LKkkl~~ 33 (115)
T PHA03155 11 EELEKELQKLKIENKALKKKLLQ 33 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 33444445688999999999844
No 32
>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional
Probab=65.66 E-value=28 Score=28.75 Aligned_cols=60 Identities=13% Similarity=0.100 Sum_probs=45.9
Q ss_pred ccchhhHHHHHhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 3 VSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYHQQ 62 (93)
Q Consensus 3 ~s~LSaqv~~L~qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly~QQ 62 (93)
.+.++..|..+....-.+..=....+.|+.+|..-+.=.+.+++.+.+|+.+|+..|..+
T Consensus 15 ~~~~~~~~~~~~~~~~~i~~Lp~~~~~rv~aL~~lQ~e~~~le~ef~~ev~~LE~kY~~~ 74 (337)
T PTZ00007 15 ESDIIEGLDSIELDDEKLSHLTDEQRETLKKLQLLQKEFDDLEVEYNAELRKLRSKYEDL 74 (337)
T ss_pred cchhhhhhhhcccccchhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555544445555677899999999888888999999999999999998753
No 33
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=65.02 E-value=27 Score=20.80 Aligned_cols=29 Identities=34% Similarity=0.420 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 28 KQRIAALAQDKIFKDAHQEALKREIQRLR 56 (93)
Q Consensus 28 KqRL~aL~Qe~~lKda~~EaLkkEieRLk 56 (93)
|+.+..|++....-...|..|+.+|..|+
T Consensus 24 k~~~~~le~~~~~L~~en~~L~~~i~~L~ 52 (54)
T PF07716_consen 24 KQREEELEQEVQELEEENEQLRQEIAQLE 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555566666666666654
No 34
>PHA03162 hypothetical protein; Provisional
Probab=64.99 E-value=4.7 Score=30.01 Aligned_cols=19 Identities=37% Similarity=0.524 Sum_probs=14.6
Q ss_pred HhhhhhhhccccHHHHHHH
Q 045244 13 LDHQRLLLNVDNSALKQRI 31 (93)
Q Consensus 13 L~qq~~~Ls~EN~~LKqRL 31 (93)
|.-.-.-|.|||++||.+|
T Consensus 18 LaaeL~kLqmENK~LKkkl 36 (135)
T PHA03162 18 LAAEIAKLQLENKALKKKI 36 (135)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344456889999999998
No 35
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=64.94 E-value=31 Score=22.61 Aligned_cols=44 Identities=30% Similarity=0.347 Sum_probs=27.1
Q ss_pred hhhccccHHHHHHHHHHHHHHH------HH---------HHHHHHHHHHHHHHHHHHHH
Q 045244 18 LLLNVDNSALKQRIAALAQDKI------FK---------DAHQEALKREIQRLRQVYHQ 61 (93)
Q Consensus 18 ~~Ls~EN~~LKqRL~aL~Qe~~------lK---------da~~EaLkkEieRLk~ly~Q 61 (93)
.-|.-||=.||.||--|++... .+ ....+.|++|+++++..-.+
T Consensus 10 ~~L~KENF~LKLrI~fLee~l~~~~~~~~~~~~keNieLKve~~~L~~el~~~~~~l~~ 68 (75)
T PF07989_consen 10 DKLKKENFNLKLRIYFLEERLQKLGPESIEELLKENIELKVEVESLKRELQEKKKLLKE 68 (75)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788888888877766543 11 23444666666666655444
No 36
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=64.17 E-value=27 Score=23.88 Aligned_cols=39 Identities=28% Similarity=0.527 Sum_probs=26.4
Q ss_pred ccHHHHHHHHHHHHH-----HHHH-HHHHHHHHHHHHHHHHHHHH
Q 045244 23 DNSALKQRIAALAQD-----KIFK-DAHQEALKREIQRLRQVYHQ 61 (93)
Q Consensus 23 EN~~LKqRL~aL~Qe-----~~lK-da~~EaLkkEieRLk~ly~Q 61 (93)
||++|+.-|.-|..+ .+-| -++|-.|+.|+.|||..|-+
T Consensus 25 e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~~~ 69 (86)
T PF12711_consen 25 ENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFYVE 69 (86)
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456666666666532 2222 35788999999999998843
No 37
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=64.12 E-value=15 Score=28.58 Aligned_cols=54 Identities=17% Similarity=0.187 Sum_probs=36.9
Q ss_pred cccchhhHHHHHhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 2 EVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRL 55 (93)
Q Consensus 2 E~s~LSaqv~~L~qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRL 55 (93)
++++|=+.|+-|+-.+--|.-||+.||.-+..++..---=-.....|++.+.-+
T Consensus 2 ~t~dL~~~v~dL~~~n~~L~~en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~ 55 (193)
T PF14662_consen 2 ATSDLLSCVEDLQLNNQKLADENAKLQRSVETAEEGNAQLAEEITDLRKQLKSL 55 (193)
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467788888888888888999999999888888764333223334444444433
No 38
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=63.46 E-value=31 Score=26.72 Aligned_cols=51 Identities=12% Similarity=0.059 Sum_probs=38.9
Q ss_pred hhHHHHHhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 7 SPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQ 57 (93)
Q Consensus 7 Saqv~~L~qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ 57 (93)
..+|+.|.|....-+.-.-+|-++|+.|.++..-=.++.|.+.-|+++|+.
T Consensus 39 ~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~ 89 (263)
T PRK10803 39 EDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVE 89 (263)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 466777766665555555678889999999988888888888888887754
No 39
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=60.91 E-value=57 Score=23.82 Aligned_cols=68 Identities=9% Similarity=0.121 Sum_probs=47.2
Q ss_pred cchhhHHHHHhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhCCC
Q 045244 4 SVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYHQ--QNLKKMENGA 71 (93)
Q Consensus 4 s~LSaqv~~L~qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly~Q--Qq~~~~~~~~ 71 (93)
+.+++.++--.+.-.....+|..++..|..|.++..-.+..+..|+.+.......-.+ +......+.+
T Consensus 22 ~~l~~~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~re~~i~rL~~EN 91 (135)
T TIGR03495 22 RNARADLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQREQRIERLKREN 91 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3455555555566666777788888888888888888888888888888877766555 4444444443
No 40
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=60.55 E-value=28 Score=25.62 Aligned_cols=45 Identities=16% Similarity=0.246 Sum_probs=31.8
Q ss_pred hhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 15 HQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVY 59 (93)
Q Consensus 15 qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly 59 (93)
....++.++|..+..++..+..+..-..+..+.++++.+|++.++
T Consensus 50 kG~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~ 94 (322)
T TIGR01730 50 KGQVLARLDDDDYQLALQAALAQLAAAEAQLELAQRSFERAERLV 94 (322)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344577888888888877776666656666667777777776665
No 41
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=60.06 E-value=60 Score=24.64 Aligned_cols=61 Identities=21% Similarity=0.230 Sum_probs=31.1
Q ss_pred ccchhhHHHHHhhhhhhhccccHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 045244 3 VSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIF----KDAHQEALKREIQRLRQVYHQQN 63 (93)
Q Consensus 3 ~s~LSaqv~~L~qq~~~Ls~EN~~LKqRL~aL~Qe~~l----Kda~~EaLkkEieRLk~ly~QQq 63 (93)
+..+...|..|..+-..|...|..|..+|..++...-. -++.-..|+.|+..||.-..+|.
T Consensus 218 ~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~ 282 (312)
T PF00038_consen 218 LKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQL 282 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Confidence 33444455555555555555566666666555443322 23333455566666665555443
No 42
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=59.50 E-value=25 Score=22.14 Aligned_cols=31 Identities=32% Similarity=0.580 Sum_probs=25.3
Q ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 20 LNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQ 57 (93)
Q Consensus 20 Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ 57 (93)
=+.++++.+.||..|. ++|..|+.|++++|.
T Consensus 20 R~~d~~~a~~rl~~l~-------~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 20 RSLDRSAARKRLSKLE-------GENRLLRAELERLRS 50 (52)
T ss_pred ccCCchhHHHHHHHHH-------HHHHHHHHHHHHHhh
Confidence 3567888888888874 679999999999874
No 43
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=58.02 E-value=61 Score=22.52 Aligned_cols=45 Identities=20% Similarity=0.272 Sum_probs=27.1
Q ss_pred hhhHHHHHhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 6 LSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKR 50 (93)
Q Consensus 6 LSaqv~~L~qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkk 50 (93)
|+..+.-+..+..-|...+..||-+++.++.+.-......-.+++
T Consensus 57 l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~ 101 (151)
T PF11559_consen 57 LSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQK 101 (151)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666677777777777777777655544443333333
No 44
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=57.73 E-value=25 Score=27.57 Aligned_cols=34 Identities=21% Similarity=0.321 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 28 KQRIAALAQDKIFKDAHQEALKREIQRLRQVYHQ 61 (93)
Q Consensus 28 KqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly~Q 61 (93)
|++..-+.+.+.+=+.+|++|+.+|+.|+.--..
T Consensus 214 k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~ 247 (269)
T KOG3119|consen 214 KQKEDEMAHRVAELEKENEALRTQVEQLKKELAT 247 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666778888888899999999999999875543
No 45
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=55.56 E-value=84 Score=23.82 Aligned_cols=59 Identities=15% Similarity=0.177 Sum_probs=46.0
Q ss_pred chhhHHHHHhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 5 VLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYHQQN 63 (93)
Q Consensus 5 ~LSaqv~~L~qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly~QQq 63 (93)
.+...+..-......+..|+..+|.++++|.-+.---.+.+..|++.|..|..-|.-+.
T Consensus 199 ~l~~~~~~~~~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~ 257 (312)
T PF00038_consen 199 ELRQQSEKSSEELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEER 257 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHH
Confidence 34455555555666778899999999999998888778889999999998888777543
No 46
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=55.54 E-value=18 Score=29.80 Aligned_cols=28 Identities=36% Similarity=0.456 Sum_probs=21.4
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 19 LLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYH 60 (93)
Q Consensus 19 ~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly~ 60 (93)
+|+..|.+||-|..+| +|||.+||++.-
T Consensus 259 ~Le~rN~~LK~qa~~l--------------erEI~ylKqli~ 286 (294)
T KOG4571|consen 259 GLEKRNEELKDQASEL--------------EREIRYLKQLIL 286 (294)
T ss_pred HHHHHHHHHHHHHHHH--------------HHHHHHHHHHHH
Confidence 6888999999888765 577777777653
No 47
>PF10198 Ada3: Histone acetyltransferases subunit 3; InterPro: IPR019340 This entry is found in Ada3 and homologous proteins which function as part of histone acetyltransferase complexes []. Ada3 is an essential component of the Ada transcriptional coactivator (alteration/deficiency in activation) complex. It plays a key role in linking histone acetyltransferase-containing complexes to p53 (tumour suppressor protein) thereby regulating p53 acetylation, stability and transcriptional activation following DNA damage [].
Probab=54.81 E-value=51 Score=23.58 Aligned_cols=51 Identities=16% Similarity=0.289 Sum_probs=41.1
Q ss_pred cchhhHHHHHhhhhhhhccccHHHHHHHHHHHHHHHHH-HH--HHHHHHHHHHH
Q 045244 4 SVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFK-DA--HQEALKREIQR 54 (93)
Q Consensus 4 s~LSaqv~~L~qq~~~Ls~EN~~LKqRL~aL~Qe~~lK-da--~~EaLkkEieR 54 (93)
-++|+.|..+++.--..+.-|.+-|.||-.+..+.+-. +. .-+.+.++|+.
T Consensus 36 DEI~aeLR~lQ~eLr~~~~~N~~rk~rL~~~~~e~ma~QE~~~~l~~lD~~V~~ 89 (131)
T PF10198_consen 36 DEISAELRRLQAELREQSAHNNARKKRLLKIAKEEMARQEYKRILDDLDKQVEQ 89 (131)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36889999999999999999999999999999888743 32 23566777765
No 48
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=54.53 E-value=19 Score=24.70 Aligned_cols=33 Identities=21% Similarity=0.186 Sum_probs=21.3
Q ss_pred chhhHHHHHhhhhhhhccccHHHHHHHHHHHHH
Q 045244 5 VLSPRVAFLDHQRLLLNVDNSALKQRIAALAQD 37 (93)
Q Consensus 5 ~LSaqv~~L~qq~~~Ls~EN~~LKqRL~aL~Qe 37 (93)
.+..+++-+.+++.-|..+|..|+.++..|..+
T Consensus 31 ~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~ 63 (105)
T PRK00888 31 RVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGG 63 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 345566666666666777777777777666653
No 49
>COG1792 MreC Cell shape-determining protein [Cell envelope biogenesis, outer membrane]
Probab=54.35 E-value=28 Score=27.52 Aligned_cols=39 Identities=31% Similarity=0.394 Sum_probs=30.9
Q ss_pred hhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 18 LLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYH 60 (93)
Q Consensus 18 ~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly~ 60 (93)
.-+..||..||.+++.+.+. ...-+.||+|-.|||-+..
T Consensus 69 ~~~~~en~~Lk~~l~~~~~~----~~~~~~l~~EN~~Lr~lL~ 107 (284)
T COG1792 69 KDLALENEELKKELAELEQL----LEEVESLEEENKRLKELLD 107 (284)
T ss_pred HHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhC
Confidence 34667899999999887764 4567789999999997754
No 50
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=53.91 E-value=20 Score=22.37 Aligned_cols=38 Identities=16% Similarity=0.160 Sum_probs=26.2
Q ss_pred hhhHHHHHhhhhhhhccccHHHHHHHHHHHHHHHHHHH
Q 045244 6 LSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDA 43 (93)
Q Consensus 6 LSaqv~~L~qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda 43 (93)
+..+++-+.++..-+..||..|+..+..|.....|.+.
T Consensus 29 ~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~~~rIe~~ 66 (85)
T TIGR02209 29 LNNELQKLQLEIDKLQKEWRDLQLEVAELSRHERIEKI 66 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 34455666677777788888888888887776665443
No 51
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=53.84 E-value=47 Score=19.95 Aligned_cols=33 Identities=27% Similarity=0.321 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 26 ALKQRIAALAQDKIFKDAHQEALKREIQRLRQV 58 (93)
Q Consensus 26 ~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~l 58 (93)
.||..-.+|.-+.--=-.+++.|+.||.+|+..
T Consensus 9 ~LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 9 ALKASYDSLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455556666554444444566777777776643
No 52
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=53.84 E-value=64 Score=21.54 Aligned_cols=55 Identities=18% Similarity=0.212 Sum_probs=45.0
Q ss_pred ccchhhHHHHHhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 3 VSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQ 57 (93)
Q Consensus 3 ~s~LSaqv~~L~qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ 57 (93)
.+.+..=+..|+-.--.+-+||=.||+.|..+.|+---.=.++|+-.+=|-||-.
T Consensus 3 ~~SIP~lL~~lQnEWDa~mLE~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~k 57 (70)
T PF08606_consen 3 ATSIPSLLSTLQNEWDALMLENFTLRKQLDQTRQELSHALYQHDAACRVIARLLK 57 (70)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3556666778888888888999999999999999988888888888877777643
No 53
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=52.93 E-value=24 Score=29.20 Aligned_cols=41 Identities=24% Similarity=0.289 Sum_probs=29.3
Q ss_pred hhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 15 HQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVY 59 (93)
Q Consensus 15 qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly 59 (93)
+.-..|.-||.+||.+++.|+.+..- .+.++.|-.+||.+.
T Consensus 57 ~~y~~L~~EN~~Lk~Ena~L~~~l~~----~e~l~~En~~Lr~ll 97 (337)
T PRK14872 57 SHALVLETENFLLKERIALLEERLKS----YEEANQTPPLFSEIL 97 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhh
Confidence 34467888999999999999776553 455567766777554
No 54
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=52.09 E-value=72 Score=27.83 Aligned_cols=51 Identities=18% Similarity=0.209 Sum_probs=32.9
Q ss_pred HHHHHhhhhhhhccccHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 9 RVAFLDHQRLLLNVDNSALKQRIAA---------------------LAQDKIFKDAHQEALKREIQRLRQVY 59 (93)
Q Consensus 9 qv~~L~qq~~~Ls~EN~~LKqRL~a---------------------L~Qe~~lKda~~EaLkkEieRLk~ly 59 (93)
++.-|.+....|..+|..|..+|.. .+....+|...-++|+.|.++|+...
T Consensus 511 ~~~~Le~e~~~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~l 582 (722)
T PF05557_consen 511 EIEELERENERLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLARL 582 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555555555555555554 12455678888999999999999554
No 55
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=52.07 E-value=36 Score=26.67 Aligned_cols=31 Identities=29% Similarity=0.449 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 27 LKQRIAALAQDKIFKDAHQEALKREIQRLRQ 57 (93)
Q Consensus 27 LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ 57 (93)
.|+|...|+.+..--......|+.||+.||.
T Consensus 91 FR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~ 121 (248)
T PF08172_consen 91 FRQRNAELEEELRKQQQTISSLRREVESLRA 121 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888888888888888888899999998874
No 56
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=51.88 E-value=24 Score=24.04 Aligned_cols=29 Identities=34% Similarity=0.568 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 045244 26 ALKQRIAALAQDKI---FKDAHQEALKREIQR 54 (93)
Q Consensus 26 ~LKqRL~aL~Qe~~---lKda~~EaLkkEieR 54 (93)
-.|+||+.|+++.- |-+.+.+.+|.|++|
T Consensus 40 iyr~qL~ELe~d~~~G~l~~~e~~~~~~El~r 71 (117)
T TIGR03142 40 VYRDRLAELERDLAEGLLDEAEAEAARAELQR 71 (117)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 46999999999863 567888999999986
No 57
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=50.89 E-value=23 Score=30.65 Aligned_cols=46 Identities=22% Similarity=0.290 Sum_probs=35.3
Q ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Q 045244 20 LNVDNSALKQRIAALAQDKIFKDAHQEAL-------KREIQRLRQVYHQQNLK 65 (93)
Q Consensus 20 Ls~EN~~LKqRL~aL~Qe~~lKda~~EaL-------kkEieRLk~ly~QQq~~ 65 (93)
+-++-..=|..+++|+.-.+||+|+-+|+ ++|+++||.+---...|
T Consensus 341 ~~~~~~~kk~~~eeLESIVRiKqAEA~MFQ~kAdEARrEAE~LqrI~~aK~~k 393 (446)
T PF07227_consen 341 LQFERQRKKPQIEELESIVRIKQAEAKMFQLKADEARREAEGLQRIALAKSEK 393 (446)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 33444444568999999999999998876 79999999887665544
No 58
>PF07216 LcrG: LcrG protein; InterPro: IPR009863 This family consists of several bacterial LcrG proteins. Yersiniae are equipped with the Yop virulon, an apparatus that allows extracellular bacteria to deliver toxic Yop proteins inside the host cell cytosol in order to sabotage the communication networks of the host cell or even to cause cell death. LcrG is a component of the Yop virulon involved in the regulation of secretion of the Yops []. This protein is found in type III secretion operons, along with LcrR, H and V. Also known as PcrG in Pseudomonas, the prot ein is believed to make a 1:1 complex with PcrV (LcrV) []. Mutations in LcrG cause premature secretion of effector proteins into the medium [].
Probab=50.61 E-value=11 Score=26.50 Aligned_cols=25 Identities=48% Similarity=0.535 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 36 QDKIFKDAHQEALKREIQRLRQVYHQ 61 (93)
Q Consensus 36 Qe~~lKda~~EaLkkEieRLk~ly~Q 61 (93)
--...|.|++|.| .||+|.|+.+.|
T Consensus 50 ~~~~~k~AEqELL-~Ei~Rrr~~qp~ 74 (93)
T PF07216_consen 50 SPELMKQAEQELL-EEIQRRRQQQPQ 74 (93)
T ss_pred CHHHHHHHHHHHH-HHHHHHHHcCCC
Confidence 3457899999877 699999988777
No 59
>KOG4343 consensus bZIP transcription factor ATF6 [Transcription]
Probab=50.14 E-value=16 Score=33.07 Aligned_cols=30 Identities=23% Similarity=0.337 Sum_probs=18.3
Q ss_pred hhHHHHHhhhhhhhccccHHHHHHHHHHHH
Q 045244 7 SPRVAFLDHQRLLLNVDNSALKQRIAALAQ 36 (93)
Q Consensus 7 Saqv~~L~qq~~~Ls~EN~~LKqRL~aL~Q 36 (93)
-+++--|..++-.|..||.+||+||+.+.-
T Consensus 308 e~rLq~ll~Ene~Lk~ENatLk~qL~~l~~ 337 (655)
T KOG4343|consen 308 EARLQALLSENEQLKKENATLKRQLDELVS 337 (655)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhh
Confidence 345555556666666666666666666554
No 60
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=47.61 E-value=71 Score=23.63 Aligned_cols=42 Identities=21% Similarity=0.280 Sum_probs=35.0
Q ss_pred HHHHHhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 9 RVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKR 50 (93)
Q Consensus 9 qv~~L~qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkk 50 (93)
-|++..+|-..|.-+|..|+.||+.|-..+.=-|...+.+.+
T Consensus 41 avSL~erQ~~~LR~~~~~L~~~l~~Li~~Ar~Ne~~~~~~~~ 82 (225)
T PF04340_consen 41 AVSLVERQLERLRERNRQLEEQLEELIENARENEAIFQRLHR 82 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999998888766666655544
No 61
>smart00338 BRLZ basic region leucin zipper.
Probab=47.57 E-value=63 Score=19.60 Aligned_cols=31 Identities=35% Similarity=0.458 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 29 QRIAALAQDKIFKDAHQEALKREIQRLRQVY 59 (93)
Q Consensus 29 qRL~aL~Qe~~lKda~~EaLkkEieRLk~ly 59 (93)
..+..|+.....-..+|+.|+.++..|+.-.
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~ 56 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRREL 56 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555665555555443
No 62
>PF04999 FtsL: Cell division protein FtsL; InterPro: IPR007082 In Escherichia coli, nine gene products are known to be essential for assembly of the division septum. One of these, FtsL, is a bitopic membrane protein whose precise function is not understood. It has been proposed that FtsL interacts with the DivIC protein IPR007060 from INTERPRO [], however this interaction may be indirect [].; GO: 0007049 cell cycle, 0016021 integral to membrane
Probab=45.82 E-value=28 Score=22.55 Aligned_cols=38 Identities=18% Similarity=0.146 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 25 SALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYHQQ 62 (93)
Q Consensus 25 ~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly~QQ 62 (93)
..+-.+++.+.++..--..+++.|+=|+.+|.....=.
T Consensus 38 ~~~~~~l~~l~~~~~~l~~e~~~L~lE~~~l~~~~rIe 75 (97)
T PF04999_consen 38 RQLFYELQQLEKEIDQLQEENERLRLEIATLSSPSRIE 75 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHH
Confidence 33334455555555555566788888888877655443
No 63
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=45.56 E-value=82 Score=20.34 Aligned_cols=32 Identities=19% Similarity=0.426 Sum_probs=17.3
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 21 NVDNSALKQRIAALAQDKIFKDAHQEALKREI 52 (93)
Q Consensus 21 s~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEi 52 (93)
..+|.+|+-||.++....-.-+..+..|.+|-
T Consensus 4 ea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ER 35 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNSVHEIENKRLRRER 35 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555555543
No 64
>TIGR02573 LcrG_PcrG type III secretion protein LcrG. This protein is found in type III secretion operons, along with LcrR, H and V. Also known as PcrG in Pseudomonas, the protein is believed to make a 1:1 complex with PcrV (LcrV). Mutants of LcrG cause premature secretion of effector proteins into the medium.
Probab=45.24 E-value=16 Score=25.66 Aligned_cols=24 Identities=42% Similarity=0.524 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 38 KIFKDAHQEALKREIQRLRQVYHQQ 62 (93)
Q Consensus 38 ~~lKda~~EaLkkEieRLk~ly~QQ 62 (93)
.+.+.|++|.| .||+|.|+.+.||
T Consensus 49 e~~~~AEqELL-~EiqRrr~~qp~~ 72 (90)
T TIGR02573 49 ELMQHAEQELL-EEVQRRRSQQPQQ 72 (90)
T ss_pred HHHHHHHHHHH-HHHHHHHHcCCCC
Confidence 45677888766 6999999877763
No 65
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=43.86 E-value=37 Score=20.64 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=12.7
Q ss_pred HHHhhhhhhhccccHHHHHHHHHHH
Q 045244 11 AFLDHQRLLLNVDNSALKQRIAALA 35 (93)
Q Consensus 11 ~~L~qq~~~Ls~EN~~LKqRL~aL~ 35 (93)
.-|...-..|..+|..|+.++..|.
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~L~ 53 (64)
T PF00170_consen 29 EELEEKVEELESENEELKKELEQLK 53 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444555555555555554443
No 66
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=42.95 E-value=49 Score=22.66 Aligned_cols=39 Identities=23% Similarity=0.324 Sum_probs=31.2
Q ss_pred hhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 18 LLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQV 58 (93)
Q Consensus 18 ~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~l 58 (93)
+-.-|||..|+..+..+..=. ..+..|++=.||..||..
T Consensus 47 tr~A~EN~rL~ee~rrl~~f~--~~gerE~l~~eis~L~~~ 85 (86)
T PF12711_consen 47 TRFAMENIRLREELRRLQSFY--VEGEREMLLQEISELRDQ 85 (86)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHhh
Confidence 345689999998888876655 678899999999999864
No 67
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=42.83 E-value=64 Score=22.08 Aligned_cols=44 Identities=25% Similarity=0.339 Sum_probs=35.9
Q ss_pred hhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 17 RLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYH 60 (93)
Q Consensus 17 ~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly~ 60 (93)
-.+|-||=.+||.+=.+|+++.---.+..++|..|.+.||+-.+
T Consensus 20 I~LLqmEieELKekn~~L~~e~~~~~~~r~~L~~en~qLk~E~~ 63 (79)
T PRK15422 20 ITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQN 63 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 35678888999999999999888777888889999988886543
No 68
>KOG3650 consensus Predicted coiled-coil protein [General function prediction only]
Probab=42.56 E-value=27 Score=25.47 Aligned_cols=30 Identities=37% Similarity=0.405 Sum_probs=18.9
Q ss_pred chhhHHHHHhhhhhhhccccHHHHHHHHHH
Q 045244 5 VLSPRVAFLDHQRLLLNVDNSALKQRIAAL 34 (93)
Q Consensus 5 ~LSaqv~~L~qq~~~Ls~EN~~LKqRL~aL 34 (93)
.||.||..+-..++-|..||.-|-|-|+.|
T Consensus 74 DLSqRVdsVKEEnLKLrSENQVLGQYIeNL 103 (120)
T KOG3650|consen 74 DLSQRVDSVKEENLKLRSENQVLGQYIENL 103 (120)
T ss_pred HHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Confidence 356666666666666666666666655544
No 69
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=41.30 E-value=1.5e+02 Score=22.77 Aligned_cols=46 Identities=17% Similarity=0.174 Sum_probs=21.3
Q ss_pred hhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 15 HQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYH 60 (93)
Q Consensus 15 qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly~ 60 (93)
.+...+..+=..++.+++.+..+...-...-..+++++.|.+.++.
T Consensus 144 ~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~~~~~~L~~ 189 (423)
T TIGR01843 144 AQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKE 189 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333444444444444444444444455555555555554
No 70
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=41.21 E-value=84 Score=22.78 Aligned_cols=49 Identities=27% Similarity=0.432 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcchhhhhhhhhhhhh
Q 045244 42 DAHQEALKREIQRLRQVYHQQNLKKMENGASPAPTQAAEVRVSVEKEQLL 91 (93)
Q Consensus 42 da~~EaLkkEieRLk~ly~QQq~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (93)
+.=-|.|-.|+.+|+.---+=-.| +.....|.+.+.|...+...+|-+|
T Consensus 2 ~~t~EeLaaeL~kLqmENk~LKkk-l~~~~~p~~~p~~~~LTp~qKe~~I 50 (118)
T PF05812_consen 2 DMTMEELAAELQKLQMENKALKKK-LRQSVGPGPSPDDEVLTPAQKEAMI 50 (118)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHH-HHHTT---S-TT--B--HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHH-HHccCCCCCCCCccccChHHHHHHH
Confidence 444577888888887654442222 2222226666666666666666555
No 71
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=41.05 E-value=1.2e+02 Score=21.01 Aligned_cols=57 Identities=19% Similarity=0.232 Sum_probs=32.7
Q ss_pred hhhHHHHHhhhhhhhccccHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 6 LSPRVAFLDHQRLLLNVDNSALKQRIAALA-------QDKIFKDAHQEALKREIQRLRQVYHQQ 62 (93)
Q Consensus 6 LSaqv~~L~qq~~~Ls~EN~~LKqRL~aL~-------Qe~~lKda~~EaLkkEieRLk~ly~QQ 62 (93)
+...++.+.....-|.-.+..++..+++.. ....--..-....+.|+.||+...++-
T Consensus 64 l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~ 127 (151)
T PF11559_consen 64 LRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQR 127 (151)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555433 333333444566778888888766653
No 72
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=40.45 E-value=65 Score=21.84 Aligned_cols=11 Identities=27% Similarity=0.558 Sum_probs=7.0
Q ss_pred ccHHHHHHHHH
Q 045244 23 DNSALKQRIAA 33 (93)
Q Consensus 23 EN~~LKqRL~a 33 (93)
+|++||-.|..
T Consensus 6 qNk~L~~kL~~ 16 (76)
T PF11544_consen 6 QNKELKKKLND 16 (76)
T ss_dssp HHHHHHHHHHH
T ss_pred HhHHHHHHHHH
Confidence 56777766654
No 73
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=39.12 E-value=96 Score=21.62 Aligned_cols=37 Identities=11% Similarity=0.374 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Q 045244 25 SALKQRIAALAQDKIFK-------DAHQEALKREIQRLRQVYHQ 61 (93)
Q Consensus 25 ~~LKqRL~aL~Qe~~lK-------da~~EaLkkEieRLk~ly~Q 61 (93)
.+||.+|+=.+.+.-+- +.+|+.|..|+.++|..|+.
T Consensus 4 aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~ 47 (96)
T PF11365_consen 4 AELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGD 47 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 46777777666655432 57899999999999998863
No 74
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=38.98 E-value=1.4e+02 Score=22.99 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=30.1
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 19 LLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYHQ 61 (93)
Q Consensus 19 ~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly~Q 61 (93)
-|..+-.++-..++.|.++.--|+...+.|+.++.+-|..-..
T Consensus 79 ~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el~~ar~~~~~ 121 (246)
T PF00769_consen 79 QLEQELREAEAEIARLEEESERKEEEAEELQEELEEAREDEEE 121 (246)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566667778888888888888888888887775444
No 75
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=38.92 E-value=84 Score=21.46 Aligned_cols=16 Identities=38% Similarity=0.657 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 045244 47 ALKREIQRLRQVYHQQ 62 (93)
Q Consensus 47 aLkkEieRLk~ly~QQ 62 (93)
.+..++++|+..+..+
T Consensus 91 ~~~~~~~~l~~~~~~~ 106 (118)
T PF13815_consen 91 ELQQEIEKLKQKLKKQ 106 (118)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555555554443
No 76
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=38.68 E-value=1.3e+02 Score=26.41 Aligned_cols=53 Identities=26% Similarity=0.276 Sum_probs=33.6
Q ss_pred cchhhHHHHHhhhhhhhccccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 045244 4 SVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQ-DKIFKDAHQEALKREIQRLR 56 (93)
Q Consensus 4 s~LSaqv~~L~qq~~~Ls~EN~~LKqRL~aL~Q-e~~lKda~~EaLkkEieRLk 56 (93)
.+|.+++.-+..+-..|--+|+.||.+-+.|.+ +.-+..-.+.++..|-.+|.
T Consensus 62 rTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~ 115 (472)
T TIGR03752 62 RTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELT 115 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHH
Confidence 356666666666666677777777777777654 45566666666666544443
No 77
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=38.60 E-value=75 Score=27.43 Aligned_cols=30 Identities=20% Similarity=0.233 Sum_probs=24.1
Q ss_pred HHHHhhhhhhhccccHHHHHHHHHHHHHHH
Q 045244 10 VAFLDHQRLLLNVDNSALKQRIAALAQDKI 39 (93)
Q Consensus 10 v~~L~qq~~~Ls~EN~~LKqRL~aL~Qe~~ 39 (93)
..=|.+.|..|.-||++||..++.|+-+-+
T Consensus 34 ~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l 63 (420)
T PF07407_consen 34 NFALRMENHSLKKENNDLKIEVERLENEML 63 (420)
T ss_pred hhhHHHHhHHHHHHHHHHHHHHHHHHHHhh
Confidence 445788899999999999999999865544
No 78
>PF12795 MscS_porin: Mechanosensitive ion channel porin domain
Probab=38.50 E-value=1.3e+02 Score=22.47 Aligned_cols=21 Identities=19% Similarity=0.251 Sum_probs=8.2
Q ss_pred HHhhhhhhhccccHHHHHHHH
Q 045244 12 FLDHQRLLLNVDNSALKQRIA 32 (93)
Q Consensus 12 ~L~qq~~~Ls~EN~~LKqRL~ 32 (93)
.|.=....|..+|..|.+-+.
T Consensus 154 ~l~ae~~~l~~~~~~le~el~ 174 (240)
T PF12795_consen 154 LLQAELAALEAQIEMLEQELL 174 (240)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333344444444443333
No 79
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=37.04 E-value=60 Score=22.38 Aligned_cols=16 Identities=38% Similarity=0.480 Sum_probs=5.8
Q ss_pred hhccccHHHHHHHHHH
Q 045244 19 LLNVDNSALKQRIAAL 34 (93)
Q Consensus 19 ~Ls~EN~~LKqRL~aL 34 (93)
-|+.+|..|+..+.-|
T Consensus 68 ~L~~~~~~l~~ei~~L 83 (117)
T COG2919 68 KLSARNTALEAEIKDL 83 (117)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3333333333333333
No 80
>PRK15030 multidrug efflux system transporter AcrA; Provisional
Probab=36.34 E-value=1e+02 Score=24.65 Aligned_cols=47 Identities=11% Similarity=0.118 Sum_probs=32.6
Q ss_pred hhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 15 HQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYHQ 61 (93)
Q Consensus 15 qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly~Q 61 (93)
.--.++.+++..++.+++..+-+..--.|..+.-+++.+|.+.+|.+
T Consensus 89 kGqvLa~ld~~~~~~~l~~a~A~l~~A~a~l~~a~~~~~R~~~L~~~ 135 (397)
T PRK15030 89 AGVSLYQIDPATYQATYDSAKGDLAKAQAAANIAQLTVNRYQKLLGT 135 (397)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 34467788888888888765544444455566677788888888764
No 81
>PF08232 Striatin: Striatin family; InterPro: IPR013258 This domain is associated with the N terminus of striatin. Striatin is an intracellular protein which has a caveolin-binding motif, a coiled-coil structure, a calmodulin-binding site, and a WD (IPR001680 from INTERPRO) repeat domain []. It acts as a scaffold protein [] and is involved in signalling pathways [, ].
Probab=35.79 E-value=31 Score=24.53 Aligned_cols=34 Identities=32% Similarity=0.396 Sum_probs=28.4
Q ss_pred cccchhhHHHHHhhhhhhhccccHHHHHHHHHHH
Q 045244 2 EVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALA 35 (93)
Q Consensus 2 E~s~LSaqv~~L~qq~~~Ls~EN~~LKqRL~aL~ 35 (93)
|=++|-++|++|.-++-++--=|..|+-||.-|+
T Consensus 26 ERaEmkarIa~LEGE~r~~e~l~~dL~rrIkMLE 59 (134)
T PF08232_consen 26 ERAEMKARIAFLEGERRGQENLKKDLKRRIKMLE 59 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467889999999999999988999988886544
No 82
>PF00956 NAP: Nucleosome assembly protein (NAP); InterPro: IPR002164 It is thought that NAPs act as histone chaperones, shuttling both core and linker histones from their site of synthesis in the cytoplasm to the nucleus. The proteins may be involved in regulating gene expression and therefore cellular differentiation [, ]. The centrosomal protein c-Nap1, also known as Cep250, has been implicated in the cell-cycle-regulated cohesion of microtubule-organizing centres. This 281 kDa protein consists mainly of domains predicted to form coiled coil structures. The C-terminal region defines a novel histone-binding domain that is responsible for targeting CNAP1, and possibly condensin, to mitotic chromosomes []. During interphase, C-Nap1 localizes to the proximal ends of both parental centrioles, but it dissociates from these structures at the onset of mitosis. Re-association with centrioles then occurs in late telophase or at the very beginning of G1 phase, when daughter cells are still connected by post-mitotic bridges. Electron microscopic studies performed on isolated centrosomes suggest that a proteinaceous linker connects parental centrioles and C-Nap1 may be part of a linker structure that assures the cohesion of duplicated centrosomes during interphase, but that is dismantled upon centrosome separation at the onset of mitosis []. ; GO: 0006334 nucleosome assembly, 0005634 nucleus; PDB: 2E50_Q 2Z2R_A 2AYU_A 3Q66_A 3C9B_A 3Q68_B 3Q33_B 2ZD7_B 3DM7_A 3C9D_A ....
Probab=35.71 E-value=1.5e+02 Score=22.25 Aligned_cols=36 Identities=31% Similarity=0.382 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 28 KQRIAALAQDKIFKDAHQEALKREIQRLRQVYHQQN 63 (93)
Q Consensus 28 KqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly~QQq 63 (93)
|+|+.+|..-+.=-+.++..+.+|+..|+..|..+-
T Consensus 1 ~~~i~~L~~~q~~~~~l~~~~~~e~~~le~ky~~~~ 36 (244)
T PF00956_consen 1 KQRIEALKKLQEELDELEKEFEEEIHELERKYNKLY 36 (244)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678888888888888889999999999888887643
No 83
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=35.63 E-value=1.5e+02 Score=26.34 Aligned_cols=57 Identities=23% Similarity=0.373 Sum_probs=37.1
Q ss_pred hhhHHHHHh----hhhhhhccccHHHHHHHHHHHHH----------------------HHHHHH--HHHHHHHHHHHHHH
Q 045244 6 LSPRVAFLD----HQRLLLNVDNSALKQRIAALAQD----------------------KIFKDA--HQEALKREIQRLRQ 57 (93)
Q Consensus 6 LSaqv~~L~----qq~~~Ls~EN~~LKqRL~aL~Qe----------------------~~lKda--~~EaLkkEieRLk~ 57 (93)
|++.|+-|- +.|-.|.-||+.|+.+|---+.. ..+-++ .++-++++|+.||.
T Consensus 390 laaEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEllvrl~eaeea~~~a~~r~~~~eqe~ek~~kqiekLK~ 469 (488)
T PF06548_consen 390 LAAEISALRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGELLVRLREAEEAASVAQERAMDAEQENEKAKKQIEKLKR 469 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445444443 56677888999999988533322 223333 35678999999998
Q ss_pred HHHHH
Q 045244 58 VYHQQ 62 (93)
Q Consensus 58 ly~QQ 62 (93)
.|.+.
T Consensus 470 kh~~E 474 (488)
T PF06548_consen 470 KHKME 474 (488)
T ss_pred HHHHH
Confidence 87653
No 84
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=35.60 E-value=30 Score=24.39 Aligned_cols=19 Identities=37% Similarity=0.377 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 045244 39 IFKDAHQEALKREIQRLRQ 57 (93)
Q Consensus 39 ~lKda~~EaLkkEieRLk~ 57 (93)
..=+|++++||.||..|..
T Consensus 8 q~w~aEYe~LKEEi~~l~~ 26 (99)
T PF13758_consen 8 QTWEAEYEGLKEEIEALPE 26 (99)
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 3568999999999999954
No 85
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=35.22 E-value=24 Score=23.06 Aligned_cols=32 Identities=28% Similarity=0.339 Sum_probs=20.0
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 23 DNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYHQ 61 (93)
Q Consensus 23 EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly~Q 61 (93)
|=-.||-+|..|. ..+..|+.|=..||+.--.
T Consensus 15 EVevLK~~I~eL~-------~~n~~Le~EN~~Lk~~~~p 46 (59)
T PF01166_consen 15 EVEVLKEQIAELE-------ERNSQLEEENNLLKQNASP 46 (59)
T ss_dssp SHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHH-------HHHHHHHHHHHHHHhcCCH
Confidence 3345677776664 3566777777777765433
No 86
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=35.21 E-value=1.4e+02 Score=20.19 Aligned_cols=57 Identities=21% Similarity=0.370 Sum_probs=37.6
Q ss_pred hhhHHHHHhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 6 LSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYHQQN 63 (93)
Q Consensus 6 LSaqv~~L~qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly~QQq 63 (93)
+--++.-+..++.-+.-.|.+|=..+..|....-..+. ...++.+|++++.-+....
T Consensus 15 l~~~L~~v~~~~l~l~~~n~el~~el~~l~~~~~~~~~-~~~~~~~l~~~~~~lk~~r 71 (106)
T PF05837_consen 15 LQEKLSDVEKKRLRLKRRNQELAQELLELAEKQKSQRE-DEELSEKLEKLEKELKKSR 71 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-chHHHHHHHHHHHHHHHHH
Confidence 33445555666666777777777777777776666666 5667777777777666543
No 87
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=34.48 E-value=1.4e+02 Score=24.63 Aligned_cols=36 Identities=22% Similarity=0.378 Sum_probs=15.1
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 21 NVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLR 56 (93)
Q Consensus 21 s~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk 56 (93)
.|+...+..++..+..+...-...++.++.+..+++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (398)
T PTZ00454 14 THTERDLYEKLKELEKELEFLDIQEEYIKEEQKNLK 49 (398)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444333333334444444333333
No 88
>PRK00846 hypothetical protein; Provisional
Probab=34.02 E-value=1.5e+02 Score=19.88 Aligned_cols=33 Identities=21% Similarity=0.399 Sum_probs=22.5
Q ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 20 LNVDNSALKQRIAALAQDKIFKDAHQEALKREI 52 (93)
Q Consensus 20 Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEi 52 (93)
|++-.-.+-.||..|+-..-|.+..-|.|-+.|
T Consensus 4 ~~~~~~~le~Ri~~LE~rlAfQe~tIe~LN~~v 36 (77)
T PRK00846 4 LSLRDQALEARLVELETRLSFQEQALTELSEAL 36 (77)
T ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455677899988887777776666665444
No 89
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=33.64 E-value=1.9e+02 Score=21.97 Aligned_cols=48 Identities=23% Similarity=0.302 Sum_probs=37.7
Q ss_pred HHHHhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 10 VAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQ 57 (93)
Q Consensus 10 v~~L~qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ 57 (93)
+.+++--+-.+.-||..|+..|..+.++..-=++....|++.-+.|+.
T Consensus 151 ~~~l~e~~~~i~~EN~~L~k~L~~l~~e~~~L~~~~~~Le~qk~~L~~ 198 (206)
T PF14988_consen 151 KKSLDEFTRSIKRENQQLRKELLQLIQEAQKLEARKSQLEKQKQQLQQ 198 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666777888999999999999999887777777777777666653
No 90
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=33.58 E-value=1.9e+02 Score=21.77 Aligned_cols=20 Identities=5% Similarity=0.134 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 045244 41 KDAHQEALKREIQRLRQVYH 60 (93)
Q Consensus 41 Kda~~EaLkkEieRLk~ly~ 60 (93)
..+..+..+++.+|.+.+|.
T Consensus 120 a~~~l~~a~~~~~r~~~L~~ 139 (334)
T TIGR00998 120 AREKLLQAELDLRRRVPLFK 139 (334)
T ss_pred HHHHHHHhHHHHHHHHHHHH
Confidence 33444445556666665553
No 91
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=33.37 E-value=80 Score=22.40 Aligned_cols=55 Identities=20% Similarity=0.311 Sum_probs=32.5
Q ss_pred ccchhhHHHHHhhhhhhhccccHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q 045244 3 VSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDA--HQEALKREIQRLRQ 57 (93)
Q Consensus 3 ~s~LSaqv~~L~qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda--~~EaLkkEieRLk~ 57 (93)
...|...+.=|..+-..|..+++.|+-.|.+|...--..++ ..+.|+.|+..|..
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~ 130 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEE 130 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666667777777777777777777665433222 23445555555543
No 92
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.03 E-value=2.3e+02 Score=24.31 Aligned_cols=72 Identities=21% Similarity=0.175 Sum_probs=40.1
Q ss_pred ccchhhHHHHHhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCcchhhh
Q 045244 3 VSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYHQQNLKKMENGASPAPTQAAEVR 82 (93)
Q Consensus 3 ~s~LSaqv~~L~qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly~QQq~~~~~~~~~~~~~~~~~~~ 82 (93)
...+++..+.+.|-.=.|.-.=.+|+.-+++|+|+...-+...|-|++=++. .+.+++|..+......-.|.
T Consensus 227 me~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e--------al~~~~n~~~~~~D~~~~~~ 298 (365)
T KOG2391|consen 227 MERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE--------ALEKAENLEALDIDEAIECT 298 (365)
T ss_pred HHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH--------HHhhhccCcCCCchhhhhcc
Confidence 3445555555555555555555566666666666666655555555554443 56677775444444444443
No 93
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=31.96 E-value=97 Score=28.29 Aligned_cols=53 Identities=30% Similarity=0.364 Sum_probs=26.1
Q ss_pred hhHHHHHhhhhhhhccccHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHH
Q 045244 7 SPRVAFLDHQRLLLNVDNSALKQRIAALAQ----------DKIFKDAHQEALKREIQRLRQVY 59 (93)
Q Consensus 7 Saqv~~L~qq~~~Ls~EN~~LKqRL~aL~Q----------e~~lKda~~EaLkkEieRLk~ly 59 (93)
-..|.-|.+.+..|.-++.++|--+..|.- .+..++-.-+++.++|.+|+-..
T Consensus 428 ~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L 490 (652)
T COG2433 428 EETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKEL 490 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 344555555555555554444443333322 23444555556666666665433
No 94
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=31.92 E-value=52 Score=28.53 Aligned_cols=50 Identities=32% Similarity=0.272 Sum_probs=36.6
Q ss_pred cchhhHHHHHhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 4 SVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQ 57 (93)
Q Consensus 4 s~LSaqv~~L~qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ 57 (93)
+.+|.+-++-.++--.++.||.+.||.-+-+++. +-.|.++-+||.|||-
T Consensus 383 a~ls~e~~~p~~~p~d~nf~~davkq~r~lia~l----E~~n~~i~~E~~rl~l 432 (434)
T KOG4301|consen 383 ADLSTEAADPYRQPEDENFENDAVKQQRQLIAEL----ENKNREILQEIQRLRL 432 (434)
T ss_pred hhhccccCCCccCcccccccchhHHHHHHHHHHH----HHHHHHHHHHHHHHhh
Confidence 4566666777788888999999999865554443 3456678889999873
No 95
>PRK10884 SH3 domain-containing protein; Provisional
Probab=31.88 E-value=1.6e+02 Score=22.53 Aligned_cols=15 Identities=13% Similarity=0.253 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 045244 42 DAHQEALKREIQRLR 56 (93)
Q Consensus 42 da~~EaLkkEieRLk 56 (93)
+..|+.|++|++.++
T Consensus 138 ~~~n~~L~~~l~~~~ 152 (206)
T PRK10884 138 KEENQKLKNQLIVAQ 152 (206)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 96
>PF05258 DUF721: Protein of unknown function (DUF721); InterPro: IPR007922 This family contains several actinomycete proteins of unknown function, and related sequences from other species.
Probab=31.71 E-value=3.4 Score=25.23 Aligned_cols=33 Identities=24% Similarity=0.389 Sum_probs=24.6
Q ss_pred HHHhhhhhhhccccHHHHHHHHHHHHHHHHHHHH
Q 045244 11 AFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAH 44 (93)
Q Consensus 11 ~~L~qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda~ 44 (93)
..+...++.+.++|+...++| .+.+..+++...
T Consensus 44 ~~i~~g~L~i~v~~~~~~~~L-~~~~~~il~~l~ 76 (89)
T PF05258_consen 44 VSIKDGTLVIEVDSSAWAQEL-RYMKPQILKKLN 76 (89)
T ss_pred EEEECCEEEEEECCHHHHHHH-HHHHHHHHHHHH
Confidence 345677888999999999999 666666665443
No 97
>PRK09859 multidrug efflux system protein MdtE; Provisional
Probab=31.53 E-value=1.4e+02 Score=23.64 Aligned_cols=46 Identities=9% Similarity=0.093 Sum_probs=27.5
Q ss_pred hhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 16 QRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYHQ 61 (93)
Q Consensus 16 q~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly~Q 61 (93)
--.+..+++..++.++++..-+..--.+..+..+++.+|.+.+|.+
T Consensus 86 GqvLa~ld~~~~~~~l~~a~a~l~~a~a~~~~a~~~~~R~~~L~~~ 131 (385)
T PRK09859 86 GDSLYQIDPAPLQAELNSAKGSLAKALSTASNARITFNRQASLLKT 131 (385)
T ss_pred CCEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3456677888887777654433333333344456777777777654
No 98
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=30.74 E-value=1.5e+02 Score=18.98 Aligned_cols=28 Identities=25% Similarity=0.488 Sum_probs=14.1
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 22 VDNSALKQRIAALAQDKIFKDAHQEALKREIQRLR 56 (93)
Q Consensus 22 ~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk 56 (93)
..|-.+..||+..+. .|..|..||.+|+
T Consensus 25 ~~n~~~e~kLqeaE~-------rn~eL~~ei~~L~ 52 (61)
T PF08826_consen 25 SANLAFESKLQEAEK-------RNRELEQEIERLK 52 (61)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 344455555544432 3555555665555
No 99
>PF12017 Tnp_P_element: Transposase protein; InterPro: IPR021896 Protein in this family are transposases found in insects. This region is about 230 amino acids in length and is found associated with PF05485 from PFAM.
Probab=30.70 E-value=1.8e+02 Score=22.77 Aligned_cols=50 Identities=24% Similarity=0.552 Sum_probs=30.9
Q ss_pred hhhccccHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHHHHHhhCC
Q 045244 18 LLLNVDNSALKQRIAALAQDKI-FKDAHQ--EALKREIQRLRQVYHQQNLKKMENG 70 (93)
Q Consensus 18 ~~Ls~EN~~LKqRL~aL~Qe~~-lKda~~--EaLkkEieRLk~ly~QQq~~~~~~~ 70 (93)
..+..||+.||.++..|+-+.. +|+-.. +.|+ +.|+..+..-|++...+.
T Consensus 14 ~~~~~e~~~Lk~kir~le~~l~~Lk~~l~~~~~l~---~~L~~~Fs~~Qi~~lk~~ 66 (236)
T PF12017_consen 14 RTLKIENKKLKKKIRRLEKELKKLKQKLEKYQKLE---NSLKQIFSEDQIRNLKNG 66 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhCcHHHHHHHhcC
Confidence 3566789999998887765433 233221 2232 466777777778776653
No 100
>PRK09578 periplasmic multidrug efflux lipoprotein precursor; Reviewed
Probab=30.61 E-value=1.5e+02 Score=23.37 Aligned_cols=46 Identities=20% Similarity=0.174 Sum_probs=28.7
Q ss_pred hhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 15 HQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYH 60 (93)
Q Consensus 15 qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly~ 60 (93)
..-+++.+++..+...++...-+..--.+..+.-+++.+|.+.+|.
T Consensus 87 kGq~La~ld~~~~~~~~~~a~a~l~~a~a~l~~a~~~~~R~~~L~~ 132 (385)
T PRK09578 87 QGAVLFRIDPAPLKAARDAAAGALAKAEAAHLAALDKRRRYDDLVR 132 (385)
T ss_pred CCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677888888776665443333334455556777777777764
No 101
>PF05511 ATP-synt_F6: Mitochondrial ATP synthase coupling factor 6; InterPro: IPR008387 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit F6 (or coupling factor 6) found in the F0 complex of F-ATPases in mitochondria. The F6 subunit is part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. There is no homologue of subunit F6 in bacterial or chloroplast F-ATPase, whose peripheral stalks are composed of one copy of the delta subunit (homologous to OSCP), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2WSS_V 2CLY_C 1VZS_A.
Probab=30.50 E-value=60 Score=22.86 Aligned_cols=17 Identities=24% Similarity=0.520 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 045244 44 HQEALKREIQRLRQVYH 60 (93)
Q Consensus 44 ~~EaLkkEieRLk~ly~ 60 (93)
....|+.|++||...||
T Consensus 66 ~~kel~eel~kL~r~YG 82 (99)
T PF05511_consen 66 YEKELNEELEKLARQYG 82 (99)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 45789999999999997
No 102
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=30.31 E-value=2.4e+02 Score=21.20 Aligned_cols=31 Identities=26% Similarity=0.349 Sum_probs=23.4
Q ss_pred hhHHHHHhhhhhhhccccHHHHHHHHHHHHH
Q 045244 7 SPRVAFLDHQRLLLNVDNSALKQRIAALAQD 37 (93)
Q Consensus 7 Saqv~~L~qq~~~Ls~EN~~LKqRL~aL~Qe 37 (93)
-+++..+...--.|..|+..|.+|+..++++
T Consensus 92 k~rl~~~ek~l~~Lk~e~evL~qr~~kle~E 122 (201)
T PF13851_consen 92 KARLKELEKELKDLKWEHEVLEQRFEKLEQE 122 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666777777888888888888888776
No 103
>PF15294 Leu_zip: Leucine zipper
Probab=29.94 E-value=34 Score=27.81 Aligned_cols=38 Identities=26% Similarity=0.471 Sum_probs=28.0
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHH-------------HHHH-----HHHHHHHHH
Q 045244 19 LLNVDNSALKQRIAALAQDKIFKDA-------------HQEA-----LKREIQRLR 56 (93)
Q Consensus 19 ~Ls~EN~~LKqRL~aL~Qe~~lKda-------------~~Ea-----LkkEieRLk 56 (93)
+=.+||.+|--+++.++.......+ +++. |.+||.||+
T Consensus 83 iselEn~eLLe~i~~~E~~~~~~~~~~~~~~~~~KL~pl~e~g~~~ll~kEi~rLq 138 (278)
T PF15294_consen 83 ISELENRELLEQIAEFEKQEFTSSFKPNQETSKPKLEPLNESGGSELLNKEIDRLQ 138 (278)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcccCCccccccccccccccccchHHHHHHHHHHHH
Confidence 3357899998889888877766554 3444 888888887
No 104
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=27.30 E-value=93 Score=24.94 Aligned_cols=59 Identities=19% Similarity=0.313 Sum_probs=44.2
Q ss_pred cchhhHHHHHhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 045244 4 SVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKR----EIQRLRQVYHQQ 62 (93)
Q Consensus 4 s~LSaqv~~L~qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkk----EieRLk~ly~QQ 62 (93)
+.++.++.=-...+.-+.-||..|+.+|.++..+.-+++.+-+.+-+ |++=+...+.|+
T Consensus 117 ~dIq~~~ee~~~~~~k~~~eN~~L~eKlK~l~eQye~rE~~~~~~~k~keLE~Ql~~AKl~q~ 179 (309)
T PF09728_consen 117 KDIQAQMEEQSERNIKLREENEELREKLKSLIEQYELREEHFEKLLKQKELEVQLAEAKLEQQ 179 (309)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 46777777777888889999999999999999999998887766533 444444444443
No 105
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=27.26 E-value=1.9e+02 Score=23.19 Aligned_cols=36 Identities=14% Similarity=0.383 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 045244 26 ALKQRIAALAQDK-IFKDAHQEALKREIQRLRQVYHQ 61 (93)
Q Consensus 26 ~LKqRL~aL~Qe~-~lKda~~EaLkkEieRLk~ly~Q 61 (93)
.+|-.|.+++-.. ..=.+++|.||.||+|+|+-.--
T Consensus 105 kiRsel~S~e~sEF~~lr~e~EklkndlEk~ks~lr~ 141 (220)
T KOG3156|consen 105 KIRSELVSIERSEFANLRAENEKLKNDLEKLKSSLRH 141 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666655433 34478999999999999986543
No 106
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=26.90 E-value=1.9e+02 Score=25.76 Aligned_cols=56 Identities=16% Similarity=0.176 Sum_probs=44.9
Q ss_pred ccchhhHHHHHhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 3 VSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQV 58 (93)
Q Consensus 3 ~s~LSaqv~~L~qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~l 58 (93)
+|.+-+=+..|+-.--.+-+||=.|+|+|+...|+----=.++++-.+=|-||..-
T Consensus 66 atSIPalL~~lQdEWDavML~~F~LRqqL~ttrQELShaLYqhDAAcrViaRL~kE 121 (506)
T KOG0289|consen 66 ATSIPALLKTLQDEWDAVMLESFTLRQQLQTTRQELSHALYQHDAACRVIARLTKE 121 (506)
T ss_pred ccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 45667778888887778888999999999999999776667778877777777543
No 107
>KOG4634 consensus Mitochondrial F1F0-ATP synthase, subunit Cf6 (coupling factor 6) [Energy production and conversion]
Probab=26.81 E-value=66 Score=23.14 Aligned_cols=17 Identities=35% Similarity=0.503 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 045244 44 HQEALKREIQRLRQVYH 60 (93)
Q Consensus 44 ~~EaLkkEieRLk~ly~ 60 (93)
-..+||+|+.||.+.|+
T Consensus 61 ~e~eLk~el~rla~qfg 77 (105)
T KOG4634|consen 61 YEQELKEELFRLAQQFG 77 (105)
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 45689999999999887
No 108
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=26.59 E-value=80 Score=21.31 Aligned_cols=14 Identities=36% Similarity=0.536 Sum_probs=7.9
Q ss_pred ccccHHHHHHHHHH
Q 045244 21 NVDNSALKQRIAAL 34 (93)
Q Consensus 21 s~EN~~LKqRL~aL 34 (93)
.=||..||.+|+.+
T Consensus 6 ~eEn~~Lk~eiqkl 19 (76)
T PF07334_consen 6 QEENARLKEEIQKL 19 (76)
T ss_pred HHHHHHHHHHHHHH
Confidence 34566666666544
No 109
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=25.76 E-value=1.9e+02 Score=18.66 Aligned_cols=30 Identities=20% Similarity=0.257 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 25 SALKQRIAALAQDKIFKDAHQEALKREIQR 54 (93)
Q Consensus 25 ~~LKqRL~aL~Qe~~lKda~~EaLkkEieR 54 (93)
.+|+.+|..++.+..--.+..++++..+.-
T Consensus 73 ~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~ 102 (104)
T PF13600_consen 73 KELEEELEALEDELAALQDEIQALEAQIAF 102 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456677777776666666666666665543
No 110
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=25.73 E-value=1.1e+02 Score=31.07 Aligned_cols=53 Identities=25% Similarity=0.200 Sum_probs=38.6
Q ss_pred cchhhHHHHHhhhhhhhccccHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHHH
Q 045244 4 SVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQD----------------------KIFKDAHQEALKREIQRLR 56 (93)
Q Consensus 4 s~LSaqv~~L~qq~~~Ls~EN~~LKqRL~aL~Qe----------------------~~lKda~~EaLkkEieRLk 56 (93)
.+|.+++.........|-+||..-|+|-+.|... .--++.+++.|++++.|||
T Consensus 1267 ~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q 1341 (1822)
T KOG4674|consen 1267 KELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELEEKENLIAELKKELNRLQ 1341 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677788888888888889999999998887765 2234555666666666666
No 111
>COG5570 Uncharacterized small protein [Function unknown]
Probab=25.49 E-value=52 Score=21.42 Aligned_cols=11 Identities=45% Similarity=0.773 Sum_probs=9.3
Q ss_pred HHHHHHHHHHH
Q 045244 47 ALKREIQRLRQ 57 (93)
Q Consensus 47 aLkkEieRLk~ 57 (93)
.||.||++||.
T Consensus 44 ~lKeeIEkLka 54 (57)
T COG5570 44 RLKEEIEKLKA 54 (57)
T ss_pred HHHHHHHHHhc
Confidence 57899999985
No 112
>PF00631 G-gamma: GGL domain; InterPro: IPR015898 This entry represents the G protein gamma subunit and the GGL (G protein gamma-like) domain, which are related in sequence and are comprised of an extended alpha-helical polypeptide. The G protein gamma subunit forms a stable dimer with the beta subunit, but it does not make any contact with the alpha subunit, which contacts the opposite face of the beta subunit. The GGL domain is found in several RGS (regulators of G protein signaling) proteins. GGL domains can interact with beta subunits to form novel dimers that prevent gamma subunit binding, and may prevent heterotrimer formation by inhibiting alpha subunit binding. The interaction between G protein beta-5 neuro-specific isoforms and RGS GGL domains may represent a general mode of binding between beta-propeller proteins and their partners [].; GO: 0004871 signal transducer activity, 0007186 G-protein coupled receptor protein signaling pathway, 0005834 heterotrimeric G-protein complex; PDB: 3PSC_G 3SN6_G 1OMW_G 2BCJ_G 1GG2_G 3PVW_G 3PVU_G 3AH8_G 3CIK_G 1GP2_G ....
Probab=25.31 E-value=67 Score=19.95 Aligned_cols=12 Identities=67% Similarity=1.016 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHH
Q 045244 46 EALKREIQRLRQ 57 (93)
Q Consensus 46 EaLkkEieRLk~ 57 (93)
+.|++||+.||.
T Consensus 5 ~~l~~ei~~L~~ 16 (68)
T PF00631_consen 5 DQLKREIEQLRQ 16 (68)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 445555555554
No 113
>PF11471 Sugarporin_N: Maltoporin periplasmic N-terminal extension; InterPro: IPR021570 This N-terminal domain is found in members of the sugar porin family 1.B.3 from TC, They are related to LamB - the well characterised maltoporin of Escherichia coli for which the three-dimensional structures with and without its substrate have been obtained by X-ray diffraction. The protein consists of an 18 beta-stranded beta-barrel in contrast to proteins of the general bacterial porin family (GBP) and the Rhodobacter PorCa Porin (RPP) family which consist of 16 beta-stranded beta-barrels. Although maltoporin contains a wider beta-barrel than the porins of the GBP and RPP families (1.B.1 from TC and 1.B.7 from TC), it exhibits a narrower channel, showing only 5% of the ionic conductance of the latter porins.
Probab=24.77 E-value=1.8e+02 Score=18.35 Aligned_cols=23 Identities=39% Similarity=0.497 Sum_probs=15.5
Q ss_pred ccHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 23 DNSALKQRIAALAQDKIFKDAHQEA 47 (93)
Q Consensus 23 EN~~LKqRL~aL~Qe~~lKda~~Ea 47 (93)
.+..+-+||+.|++. |.++.+++
T Consensus 26 ~~ltiEqRLa~LE~r--L~~ae~ra 48 (60)
T PF11471_consen 26 APLTIEQRLAALEQR--LQAAEQRA 48 (60)
T ss_pred ccCCHHHHHHHHHHH--HHHHHHHH
Confidence 444688999999875 45555444
No 114
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=24.75 E-value=2.8e+02 Score=22.15 Aligned_cols=48 Identities=21% Similarity=0.297 Sum_probs=28.0
Q ss_pred HHHHHhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 9 RVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLR 56 (93)
Q Consensus 9 qv~~L~qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk 56 (93)
.+.-++..-..|.-|...|.+.|..|+++.---+.+-..|+.|...|.
T Consensus 44 ~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~ 91 (314)
T PF04111_consen 44 DIEELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELD 91 (314)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555556666677777777777766555555555555555553
No 115
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=24.69 E-value=2.4e+02 Score=22.32 Aligned_cols=45 Identities=20% Similarity=0.255 Sum_probs=23.2
Q ss_pred hhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 15 HQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVY 59 (93)
Q Consensus 15 qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly 59 (93)
....+|.-+-..|...++.+..-.---....+.|++|+.+||..-
T Consensus 156 ~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~ 200 (325)
T PF08317_consen 156 ENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQLV 200 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444433333445666777777776653
No 116
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=24.29 E-value=3.8e+02 Score=25.10 Aligned_cols=47 Identities=17% Similarity=0.300 Sum_probs=37.5
Q ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 20 LNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYHQQNLKK 66 (93)
Q Consensus 20 Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly~QQq~~~ 66 (93)
|+-||--|+-.+.+-.|.++--+-.+..|+.|+.++|+-..=-.++.
T Consensus 334 L~~E~~vLrgElea~kqak~Klee~i~elEEElk~~k~ea~~ar~~~ 380 (832)
T KOG2077|consen 334 LTCEKDVLRGELEAVKQAKLKLEEKIRELEEELKKAKAEAEDARQKA 380 (832)
T ss_pred hccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 67788888888888888888777888889999999998766655553
No 117
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=24.03 E-value=2.6e+02 Score=21.13 Aligned_cols=35 Identities=26% Similarity=0.332 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 26 ALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYH 60 (93)
Q Consensus 26 ~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly~ 60 (93)
.|++.|-.|..+...-+...++..+||.||+.--.
T Consensus 135 ~Le~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~ 169 (190)
T PF05266_consen 135 ELEMKILELQRQAAKLKEKKEAKDKEISRLKSEAE 169 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555544555556666667776665433
No 118
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=23.52 E-value=2.2e+02 Score=20.51 Aligned_cols=14 Identities=36% Similarity=0.489 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 045244 41 KDAHQEALKREIQR 54 (93)
Q Consensus 41 Kda~~EaLkkEieR 54 (93)
++..-++||+.++.
T Consensus 173 ~~~~~~~LkkQ~~~ 186 (192)
T PF05529_consen 173 KEKEIEALKKQSEG 186 (192)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333444443333
No 119
>PRK11556 multidrug efflux system subunit MdtA; Provisional
Probab=23.42 E-value=2.2e+02 Score=23.09 Aligned_cols=44 Identities=20% Similarity=0.282 Sum_probs=28.5
Q ss_pred hhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 17 RLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYH 60 (93)
Q Consensus 17 ~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly~ 60 (93)
-.++.+++..++..|+..+-+..-..|.-+..+++..|.+.+|.
T Consensus 113 q~La~ld~~~~~~~l~qaqa~l~~a~a~l~~A~~~~~R~~~L~~ 156 (415)
T PRK11556 113 DLLAEIDPRPFKVALAQAQGQLAKDQATLANARRDLARYQQLAK 156 (415)
T ss_pred CEEEEECcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35667788877777666554444444556667777777777764
No 120
>PF13093 FTA4: Kinetochore complex Fta4 of Sim4 subunit, or CENP-50
Probab=23.21 E-value=1.7e+02 Score=22.43 Aligned_cols=12 Identities=33% Similarity=0.714 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHH
Q 045244 47 ALKREIQRLRQV 58 (93)
Q Consensus 47 aLkkEieRLk~l 58 (93)
.|.+|++|+|.+
T Consensus 195 ~l~~El~rmR~L 206 (213)
T PF13093_consen 195 ELEAELERMRML 206 (213)
T ss_pred hHHHHHHHHHHH
Confidence 466667776665
No 121
>PHA00671 hypothetical protein
Probab=23.16 E-value=3.1e+02 Score=20.18 Aligned_cols=41 Identities=24% Similarity=0.276 Sum_probs=23.8
Q ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 20 LNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYH 60 (93)
Q Consensus 20 Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly~ 60 (93)
+-|.|+.-|-+-.+-.|.+.-..-+-+--|.|-.||.+-|+
T Consensus 20 mymsnkqekaqrsaqqqaqqqaqqqadqakaesdrltqeyq 60 (135)
T PHA00671 20 MYMSNKQEKAQRSAQQQAQQQAQQQADQAKAESDRLTQEYQ 60 (135)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 44778877766555444443333344556667777766554
No 122
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=23.09 E-value=2e+02 Score=21.08 Aligned_cols=33 Identities=24% Similarity=0.326 Sum_probs=22.8
Q ss_pred hhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 18 LLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQ 57 (93)
Q Consensus 18 ~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ 57 (93)
..|--||..||-.|.++.. ..+.=+|.|+.||.
T Consensus 88 ~~lk~EN~fLKeAl~s~QE-------~y~ed~kTI~~L~~ 120 (126)
T PF13118_consen 88 EALKNENRFLKEALYSMQE-------LYEEDRKTIELLRE 120 (126)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHhhHHHHHHHHH
Confidence 4567788888888887753 23344778887764
No 123
>smart00340 HALZ homeobox associated leucin zipper.
Probab=23.03 E-value=84 Score=19.52 Aligned_cols=15 Identities=33% Similarity=0.649 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHH
Q 045244 44 HQEALKREIQRLRQV 58 (93)
Q Consensus 44 ~~EaLkkEieRLk~l 58 (93)
+|..|.+|++.||.+
T Consensus 20 eNrRL~ke~~eLral 34 (44)
T smart00340 20 ENRRLQKEVQELRAL 34 (44)
T ss_pred HHHHHHHHHHHHHhc
Confidence 466777888887765
No 124
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=22.90 E-value=2.6e+02 Score=25.02 Aligned_cols=54 Identities=26% Similarity=0.421 Sum_probs=35.3
Q ss_pred chhhHHHHHhhhhhhhccccH----------HHHHHHHHHHHHHHHH-------------------------------HH
Q 045244 5 VLSPRVAFLDHQRLLLNVDNS----------ALKQRIAALAQDKIFK-------------------------------DA 43 (93)
Q Consensus 5 ~LSaqv~~L~qq~~~Ls~EN~----------~LKqRL~aL~Qe~~lK-------------------------------da 43 (93)
+++-+.++=+=.+-+..|||+ .|=-|++.|+|++.+= -+
T Consensus 174 t~~kq~~leQLRre~V~lentlEQEqEalvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~ 253 (552)
T KOG2129|consen 174 TLLKQNTLEQLRREAVQLENTLEQEQEALVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKL 253 (552)
T ss_pred hHHhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHH
Confidence 444444444445556667765 3556889999987642 24
Q ss_pred HHHHHHHHHHHHHHH
Q 045244 44 HQEALKREIQRLRQV 58 (93)
Q Consensus 44 ~~EaLkkEieRLk~l 58 (93)
+.+-|+.||+|||.-
T Consensus 254 hi~~l~~EveRlrt~ 268 (552)
T KOG2129|consen 254 HIDKLQAEVERLRTY 268 (552)
T ss_pred HHHHHHHHHHHHHHH
Confidence 567789999999853
No 125
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=22.73 E-value=2.2e+02 Score=25.40 Aligned_cols=44 Identities=27% Similarity=0.374 Sum_probs=32.3
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 19 LLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVYHQQ 62 (93)
Q Consensus 19 ~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly~QQ 62 (93)
-|.+|...+|-|+..|+-+..-=.+++..|..+|+++|..-.+.
T Consensus 152 ~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~E 195 (546)
T KOG0977|consen 152 ELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDE 195 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 45667777788888888777777777888888888888655543
No 126
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=22.50 E-value=2.3e+02 Score=24.81 Aligned_cols=47 Identities=21% Similarity=0.316 Sum_probs=32.2
Q ss_pred hhhccccHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 18 LLLNVDNSALKQRIAALAQDKI-------------------FKDAHQEALKREIQRLRQVYHQQNL 64 (93)
Q Consensus 18 ~~Ls~EN~~LKqRL~aL~Qe~~-------------------lKda~~EaLkkEieRLk~ly~QQq~ 64 (93)
-.|..||..|+.++..|+...- --.+.-+.+++-..|||.+|.....
T Consensus 569 ~~L~~En~~L~~~l~~le~~~~~~~~~~p~~~~~~~~~e~~~l~~~~~~~ekr~~RLkevf~~ks~ 634 (722)
T PF05557_consen 569 EALQAENEDLLARLRSLEEGNSQPVDAVPTSSLESQEKEIAELKAELASAEKRNQRLKEVFKAKSQ 634 (722)
T ss_dssp HHHHHHHHHHHHHHHHHTTTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccCCCCCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577899999999966643211 1123445677888999999987654
No 127
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=22.02 E-value=3e+02 Score=19.84 Aligned_cols=45 Identities=20% Similarity=0.261 Sum_probs=31.4
Q ss_pred HhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 13 LDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQ 57 (93)
Q Consensus 13 L~qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ 57 (93)
|++-...|+.--++|-+||+.+.-..-=..+.++..++|+.-+|-
T Consensus 52 l~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~ 96 (126)
T PF07889_consen 52 LEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVRE 96 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 344456677778899999999876655566667777777665553
No 128
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=21.92 E-value=3e+02 Score=19.57 Aligned_cols=38 Identities=24% Similarity=0.471 Sum_probs=27.8
Q ss_pred cHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 045244 24 NSALKQRIAALAQDK-IFKDAHQEALKREIQRLRQVYHQ 61 (93)
Q Consensus 24 N~~LKqRL~aL~Qe~-~lKda~~EaLkkEieRLk~ly~Q 61 (93)
++++-.||..|+-+- .+|.++.|.-+.|+++-|++|.-
T Consensus 2 rsQmElrIkdLeselsk~Ktsq~d~~~~eLEkYkqly~e 40 (111)
T PF12001_consen 2 RSQMELRIKDLESELSKMKTSQEDSNKTELEKYKQLYLE 40 (111)
T ss_pred chHHHHHHHHHHHHHHHhHhHhhhhhHHHHHHHHHHHHH
Confidence 355667777776654 45667888888999999998875
No 129
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=21.89 E-value=1.4e+02 Score=27.34 Aligned_cols=40 Identities=33% Similarity=0.440 Sum_probs=26.0
Q ss_pred HHhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 12 FLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRL 55 (93)
Q Consensus 12 ~L~qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRL 55 (93)
-|.++-+-|--||-.|.-.+..|.+.+. ..|.||-||.||
T Consensus 94 rll~dyselEeENislQKqvs~Lk~sQv----efE~~Khei~rl 133 (717)
T PF09730_consen 94 RLLQDYSELEEENISLQKQVSVLKQSQV----EFEGLKHEIKRL 133 (717)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHH
Confidence 3556667777788888888888777663 445555555444
No 130
>PF05082 Rop-like: Rop-like; InterPro: IPR007774 This family contains several uncharacterised bacterial proteins. These proteins are found in nitrogen fixation operons, so are likely to play a role in this process.; PDB: 3CSX_A 2JS5_B.
Probab=21.79 E-value=1.2e+02 Score=20.00 Aligned_cols=18 Identities=33% Similarity=0.493 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 045244 45 QEALKREIQRLRQVYHQQ 62 (93)
Q Consensus 45 ~EaLkkEieRLk~ly~QQ 62 (93)
-+.||+||.+|+....|-
T Consensus 4 ~~eLk~evkKL~~~A~~~ 21 (66)
T PF05082_consen 4 IEELKKEVKKLNRKATQA 21 (66)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 478999999999998875
No 131
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=21.32 E-value=2.7e+02 Score=25.69 Aligned_cols=51 Identities=31% Similarity=0.467 Sum_probs=0.0
Q ss_pred CcccchhhHHHHHhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHH
Q 045244 1 AEVSVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEA---------------------LKREIQRLRQV 58 (93)
Q Consensus 1 tE~s~LSaqv~~L~qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~Ea---------------------LkkEieRLk~l 58 (93)
+|...|.+++.++.. ||..||-.+-.++.+--|+--+-+. |+.|-+|||.+
T Consensus 134 ~~~~~l~~~l~~~ek-------en~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l 205 (769)
T PF05911_consen 134 AEIEDLMARLESTEK-------ENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRAL 205 (769)
T ss_pred hHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 132
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=21.26 E-value=2.6e+02 Score=21.11 Aligned_cols=36 Identities=25% Similarity=0.432 Sum_probs=16.8
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 22 VDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQ 57 (93)
Q Consensus 22 ~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ 57 (93)
+.|+..+.++++-..-..=-......|..||.+|++
T Consensus 150 L~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~ 185 (194)
T PF15619_consen 150 LENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQ 185 (194)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555544433333333344455555555544
No 133
>PLN03188 kinesin-12 family protein; Provisional
Probab=20.98 E-value=3.3e+02 Score=27.02 Aligned_cols=57 Identities=21% Similarity=0.352 Sum_probs=37.4
Q ss_pred chhhHHHHHh----hhhhhhccccHHHHHHHHHHHHH--------HHHH--------------HH--HHHHHHHHHHHHH
Q 045244 5 VLSPRVAFLD----HQRLLLNVDNSALKQRIAALAQD--------KIFK--------------DA--HQEALKREIQRLR 56 (93)
Q Consensus 5 ~LSaqv~~L~----qq~~~Ls~EN~~LKqRL~aL~Qe--------~~lK--------------da--~~EaLkkEieRLk 56 (93)
.|+|.|.-|- +.|-.|.=||+.|+.+|---+.. .+|| +| +++.++|+|+.||
T Consensus 1159 alaae~s~l~~ereker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klk 1238 (1320)
T PLN03188 1159 ALAAEISALKVEREKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLK 1238 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555555554 34667788899999988433221 2233 33 3567899999999
Q ss_pred HHHHH
Q 045244 57 QVYHQ 61 (93)
Q Consensus 57 ~ly~Q 61 (93)
..|.+
T Consensus 1239 rkh~~ 1243 (1320)
T PLN03188 1239 RKHEN 1243 (1320)
T ss_pred HHHHH
Confidence 99855
No 134
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=20.71 E-value=2.4e+02 Score=26.87 Aligned_cols=18 Identities=22% Similarity=0.305 Sum_probs=11.8
Q ss_pred hhhhhhccccHHHHHHHH
Q 045244 15 HQRLLLNVDNSALKQRIA 32 (93)
Q Consensus 15 qq~~~Ls~EN~~LKqRL~ 32 (93)
-++++|..||+.|.+.+.
T Consensus 704 ~q~sllraE~~~l~~~le 721 (961)
T KOG4673|consen 704 IQLSLLRAEQGQLSKSLE 721 (961)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 456777778877755443
No 135
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=20.29 E-value=3.3e+02 Score=25.58 Aligned_cols=51 Identities=25% Similarity=0.260 Sum_probs=39.4
Q ss_pred cchhhHHHHHhhhhhhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 4 SVLSPRVAFLDHQRLLLNVDNSALKQRIAALAQDKIFKDAHQEALKREIQR 54 (93)
Q Consensus 4 s~LSaqv~~L~qq~~~Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieR 54 (93)
+++|..+.-+.-.|--|+.|=.++.++++.|.+.-.-+...-++||-||+.
T Consensus 89 ~sVs~EL~ele~krqel~seI~~~n~kiEelk~~i~~~q~eL~~Lk~~ieq 139 (907)
T KOG2264|consen 89 ASVSLELTELEVKRQELNSEIEEINTKIEELKRLIPQKQLELSALKGEIEQ 139 (907)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHH
Confidence 356667777777788888888889999998888777777777777777764
No 136
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=20.28 E-value=1.4e+02 Score=17.72 Aligned_cols=10 Identities=40% Similarity=0.860 Sum_probs=4.7
Q ss_pred HHHHHHHHHH
Q 045244 47 ALKREIQRLR 56 (93)
Q Consensus 47 aLkkEieRLk 56 (93)
.+++|++.||
T Consensus 59 ~le~e~~~lr 68 (68)
T PF06305_consen 59 KLEKELEQLR 68 (68)
T ss_pred HHHHHHHhcC
Confidence 4445555443
No 137
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=20.14 E-value=3.9e+02 Score=20.12 Aligned_cols=29 Identities=31% Similarity=0.315 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 29 QRIAALAQDKIFKDAHQEALKREIQRLRQ 57 (93)
Q Consensus 29 qRL~aL~Qe~~lKda~~EaLkkEieRLk~ 57 (93)
.++..+..++.--.+..+.|++|++.|+.
T Consensus 42 ~~id~~~~e~~~L~~e~~~l~~e~e~L~~ 70 (251)
T PF11932_consen 42 KRIDQWDDEKQELLAEYRQLEREIENLEV 70 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444443
No 138
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=20.05 E-value=2.6e+02 Score=25.79 Aligned_cols=40 Identities=25% Similarity=0.376 Sum_probs=32.0
Q ss_pred hccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045244 20 LNVDNSALKQRIAALAQDKIFKDAHQEALKREIQRLRQVY 59 (93)
Q Consensus 20 Ls~EN~~LKqRL~aL~Qe~~lKda~~EaLkkEieRLk~ly 59 (93)
++-.+..+|.+|+-|.-+-.-|+.+.+.|-.||++||.-+
T Consensus 313 ~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr~rl 352 (775)
T PF10174_consen 313 LEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALRFRL 352 (775)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4445667788888888888888888888888888888754
Done!