BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045245
(251 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3A8T|A Chain A, Plant Adenylate Isopentenyltransferase In Complex With Atp
Length = 339
Score = 119 bits (297), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 59/112 (52%), Positives = 80/112 (71%), Gaps = 1/112 (0%)
Query: 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPH 190
K+K++ +MGAT TGK++LSIDLA HF E INS+K+QVYKGLDI TNK++ +R GVPH
Sbjct: 38 RKEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPH 97
Query: 191 HLLGFVDP-EADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVED 241
HLLG VDP + +F A +A+ +I L ++VGGSN++I AL+ D
Sbjct: 98 HLLGEVDPARGELTPADFRSLAGKAVSEITGRRKLPVLVGGSNSFIHALLVD 149
>pdb|2QGN|A Chain A, Crystal Structure Of Trna Isopentenylpyrophosphate
Transferase (Bh2366) From Bacillus Halodurans, Northeast
Structural Genomics Consortium Target Bhr41.
pdb|3EXA|A Chain A, Crystal Structure Of The Full-Length Trna
Isopentenylpyrophosphate Transferase (Bh2366) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr41.
pdb|3EXA|B Chain B, Crystal Structure Of The Full-Length Trna
Isopentenylpyrophosphate Transferase (Bh2366) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr41.
pdb|3EXA|C Chain C, Crystal Structure Of The Full-Length Trna
Isopentenylpyrophosphate Transferase (Bh2366) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr41.
pdb|3EXA|D Chain D, Crystal Structure Of The Full-Length Trna
Isopentenylpyrophosphate Transferase (Bh2366) From
Bacillus Halodurans, Northeast Structural Genomics
Consortium Target Bhr41
Length = 322
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/121 (41%), Positives = 74/121 (61%), Gaps = 1/121 (0%)
Query: 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHH 191
K+K+V ++G TA GKTK S+ LA +GE I+ + QVY+G DI T K+TA E GVPHH
Sbjct: 2 KEKLVAIVGPTAVGKTKTSVXLAKRLNGEVISGDSXQVYRGXDIGTAKITAEEXDGVPHH 61
Query: 192 LLGFVDPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVED-SIINFRANY 250
L+ DP + +F + A I +I E G L +VGG+ Y+ A++ ++ + RA+
Sbjct: 62 LIDIKDPSESFSVADFQDLATPLITEIHERGRLPFLVGGTGLYVNAVIHQFNLGDIRADE 121
Query: 251 D 251
D
Sbjct: 122 D 122
>pdb|3EPH|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPH|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPJ|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPJ|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPK|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPK|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPL|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPL|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
Length = 409
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/106 (43%), Positives = 67/106 (63%)
Query: 133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHL 192
KKV+ + G T GK++LSI LA F+GE INS+ +QVYK + I TNK ER+G+PHH+
Sbjct: 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHV 61
Query: 193 LGFVDPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEAL 238
+ VD +Y F + AI+ I G + I+VGG++ Y++ L
Sbjct: 62 MNHVDWSEEYYSHRFETECMNAIEDIHRRGKIPIVVGGTHYYLQTL 107
>pdb|3D3Q|A Chain A, Crystal Structure Of Trna
Delta(2)-Isopentenylpyrophosphate Transferase (Se0981)
From Staphylococcus Epidermidis. Northeast Structural
Genomics Consortium Target Ser100
pdb|3D3Q|B Chain B, Crystal Structure Of Trna
Delta(2)-Isopentenylpyrophosphate Transferase (Se0981)
From Staphylococcus Epidermidis. Northeast Structural
Genomics Consortium Target Ser100
Length = 340
Score = 93.6 bits (231), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 43/105 (40%), Positives = 69/105 (65%)
Query: 135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLG 194
++ ++G TA+GKT+LSI++A F+GE I+ + QVY+G DI T KVT E +G+PH+ +
Sbjct: 9 LIVIVGPTASGKTELSIEVAKKFNGEIISGDSXQVYQGXDIGTAKVTTEEXEGIPHYXID 68
Query: 195 FVDPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALV 239
+ P+A + EF + A + I I G + II GG+ YI++L+
Sbjct: 69 ILPPDASFSAYEFKKRAEKYIKDITRRGKVPIIAGGTGLYIQSLL 113
>pdb|3FOZ|A Chain A, Structure Of E. Coli Isopentenyl-Trna Transferase In
Complex With E. Coli Trna(Phe)
pdb|3FOZ|B Chain B, Structure Of E. Coli Isopentenyl-Trna Transferase In
Complex With E. Coli Trna(Phe)
pdb|2ZXU|A Chain A, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe) And Dmaspp
pdb|2ZXU|B Chain B, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe) And Dmaspp
Length = 316
Score = 80.9 bits (198), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 42/107 (39%), Positives = 59/107 (55%)
Query: 134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLL 193
K +F+MG TA+GKT L+I+L E I+ + +YKG+DI T K A E PH LL
Sbjct: 11 KAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLL 70
Query: 194 GFVDPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVE 240
DP Y +F AL + I G + ++VGG+ Y +AL+E
Sbjct: 71 DIRDPSQAYSAADFRRDALAEMADITAAGRIPLLVGGTMLYFKALLE 117
>pdb|2ZM5|A Chain A, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe)
pdb|2ZM5|B Chain B, Crystal Structure Of Trna Modification Enzyme Miaa In The
Complex With Trna(Phe)
Length = 316
Score = 75.9 bits (185), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/107 (38%), Positives = 56/107 (52%)
Query: 134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLL 193
K +F+ G TA+GKT L+I+L E I+ + +YKG DI T K A E PH LL
Sbjct: 11 KAIFLXGPTASGKTALAIELRKILPVELISVDSALIYKGXDIGTAKPNAEELLAAPHRLL 70
Query: 194 GFVDPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVE 240
DP Y +F AL I G + ++VGG+ Y +AL+E
Sbjct: 71 DIRDPSQAYSAADFRRDALAEXADITAAGRIPLLVGGTXLYFKALLE 117
>pdb|3CRM|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
pdb|3CRQ|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
pdb|3CRR|A Chain A, Structure Of Trna Dimethylallyltransferase: Rna
Modification Through A Channel
Length = 323
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 57/106 (53%)
Query: 135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLG 194
+F+MG TA GKT L++ LA E I+ + +Y+G+DI T K + PH L+
Sbjct: 7 AIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLID 66
Query: 195 FVDPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVE 240
DP Y EF AL A+ K G + ++VGG+ Y +AL+E
Sbjct: 67 IRDPAESYSAAEFRADALAAMAKATARGRIPLLVGGTMLYYKALLE 112
>pdb|3FF1|A Chain A, Structure Of Glucose 6-Phosphate Isomerase From
Staphylococcus Aureus
pdb|3FF1|B Chain B, Structure Of Glucose 6-Phosphate Isomerase From
Staphylococcus Aureus
Length = 446
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 181 TASERQGVPHHLLGFVDPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYI--EAL 238
T E G LG+VD DY +EEF + A +I EN + +++G +Y+ A
Sbjct: 36 TIHEGTGAGSDFLGWVDLPVDYDKEEFS-RIVEASKRIKENSDVLVVIGIGGSYLGARAA 94
Query: 239 VEDSIINFR 247
+E +FR
Sbjct: 95 IEXLTSSFR 103
>pdb|3BLY|A Chain A, Pyranose 2-Oxidase From Trametes Multicolor, E542kL537W
Length = 623
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Query: 198 PEADYPEEEF-------CEHALR-AIDKIIENGHLHIIVGGSNTYIEALV 239
P D PEE F CE +R A++ IE+ H+H ++ G I+A V
Sbjct: 266 PNTDAPEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADV 315
>pdb|3K4J|A Chain A, Pyranose 2-Oxidase H450q Mutant
Length = 623
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Query: 198 PEADYPEEEF-------CEHALR-AIDKIIENGHLHIIVGGSNTYIEALV 239
P D PEE F CE +R A++ IE+ H+H ++ G I+A V
Sbjct: 266 PNTDAPEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADV 315
>pdb|2IGM|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
pdb|2IGM|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase H548n
Mutant
Length = 623
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Query: 198 PEADYPEEEF-------CEHALR-AIDKIIENGHLHIIVGGSNTYIEALV 239
P D PEE F CE +R A++ IE+ H+H ++ G I+A V
Sbjct: 266 PNTDAPEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADV 315
>pdb|2IGN|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGN|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase H167a
Mutant
pdb|2IGO|A Chain A, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|B Chain B, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|D Chain D, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|C Chain C, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|E Chain E, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|F Chain F, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|H Chain H, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|2IGO|G Chain G, Crystal Structure Of Pyranose 2-Oxidase H167a Mutant With
2- Fluoro-2-Deoxy-D-Glucose
pdb|3LSM|A Chain A, Pyranose 2-Oxidase H167a Mutant With Flavin N(5) Sulfite
Adduct
pdb|3LSM|B Chain B, Pyranose 2-Oxidase H167a Mutant With Flavin N(5) Sulfite
Adduct
pdb|3PL8|A Chain A, Pyranose 2-Oxidase H167a Complex With
3-Deoxy-3-Fluoro-Beta-D-Glucose
Length = 623
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Query: 198 PEADYPEEEF-------CEHALR-AIDKIIENGHLHIIVGGSNTYIEALV 239
P D PEE F CE +R A++ IE+ H+H ++ G I+A V
Sbjct: 266 PNTDAPEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADV 315
>pdb|3K4N|A Chain A, Pyranose 2-Oxidase F454aS455AY456A MUTANT
pdb|3K4N|B Chain B, Pyranose 2-Oxidase F454aS455AY456A MUTANT
Length = 623
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Query: 198 PEADYPEEEF-------CEHALR-AIDKIIENGHLHIIVGGSNTYIEALV 239
P D PEE F CE +R A++ IE+ H+H ++ G I+A V
Sbjct: 266 PNTDAPEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADV 315
>pdb|3K4B|A Chain A, Pyranose 2-Oxidase T169s Mutant
pdb|3LSK|A Chain A, Pyranose 2-Oxidase T169s Acetate Complex
pdb|3LSK|B Chain B, Pyranose 2-Oxidase T169s Acetate Complex
pdb|3LSK|C Chain C, Pyranose 2-Oxidase T169s Acetate Complex
pdb|3LSK|D Chain D, Pyranose 2-Oxidase T169s Acetate Complex
Length = 623
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Query: 198 PEADYPEEEF-------CEHALR-AIDKIIENGHLHIIVGGSNTYIEALV 239
P D PEE F CE +R A++ IE+ H+H ++ G I+A V
Sbjct: 266 PNTDAPEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADV 315
>pdb|3K4M|A Chain A, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|B Chain B, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|C Chain C, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|D Chain D, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|E Chain E, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|F Chain F, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|G Chain G, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
pdb|3K4M|H Chain H, Pyranose 2-Oxidase Y456w Mutant In Complex With 2fg
Length = 623
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Query: 198 PEADYPEEEF-------CEHALR-AIDKIIENGHLHIIVGGSNTYIEALV 239
P D PEE F CE +R A++ IE+ H+H ++ G I+A V
Sbjct: 266 PNTDAPEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADV 315
>pdb|3K4K|A Chain A, Pyranose 2-Oxidase F454n Mutant
pdb|3K4L|A Chain A, Pyranose 2-Oxidase F454n Mutant In Complex With 2fg
pdb|3K4L|B Chain B, Pyranose 2-Oxidase F454n Mutant In Complex With 2fg
Length = 623
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Query: 198 PEADYPEEEF-------CEHALR-AIDKIIENGHLHIIVGGSNTYIEALV 239
P D PEE F CE +R A++ IE+ H+H ++ G I+A V
Sbjct: 266 PNTDAPEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADV 315
>pdb|3K4C|A Chain A, Pyranose 2-Oxidase H167aT169G MUTANT
pdb|3K4C|B Chain B, Pyranose 2-Oxidase H167aT169G MUTANT
pdb|3K4C|C Chain C, Pyranose 2-Oxidase H167aT169G MUTANT
pdb|3K4C|D Chain D, Pyranose 2-Oxidase H167aT169G MUTANT
Length = 623
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Query: 198 PEADYPEEEF-------CEHALR-AIDKIIENGHLHIIVGGSNTYIEALV 239
P D PEE F CE +R A++ IE+ H+H ++ G I+A V
Sbjct: 266 PNTDAPEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADV 315
>pdb|3FDY|A Chain A, Pyranose 2-Oxidase Thermostable Triple Mutant,
T169gE542KV546C
Length = 623
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Query: 198 PEADYPEEEF-------CEHALR-AIDKIIENGHLHIIVGGSNTYIEALV 239
P D PEE F CE +R A++ IE+ H+H ++ G I+A V
Sbjct: 266 PNTDAPEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADV 315
>pdb|3BG7|A Chain A, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|B Chain B, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|C Chain C, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|D Chain D, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|E Chain E, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|F Chain F, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|G Chain G, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
pdb|3BG7|H Chain H, Pyranose 2-oxidase From Trametes Multicolor, L537g Mutant
Length = 623
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Query: 198 PEADYPEEEF-------CEHALR-AIDKIIENGHLHIIVGGSNTYIEALV 239
P D PEE F CE +R A++ IE+ H+H ++ G I+A V
Sbjct: 266 PNTDAPEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADV 315
>pdb|1TT0|A Chain A, Crystal Structure Of Pyranose 2-Oxidase
pdb|1TT0|B Chain B, Crystal Structure Of Pyranose 2-Oxidase
pdb|1TT0|C Chain C, Crystal Structure Of Pyranose 2-Oxidase
pdb|1TT0|D Chain D, Crystal Structure Of Pyranose 2-Oxidase
pdb|2IGK|A Chain A, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|B Chain B, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|C Chain C, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|D Chain D, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|E Chain E, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|F Chain F, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|G Chain G, Crystal Structure Of Recombinant Pyranose 2-Oxidase
pdb|2IGK|H Chain H, Crystal Structure Of Recombinant Pyranose 2-Oxidase
Length = 623
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Query: 198 PEADYPEEEF-------CEHALR-AIDKIIENGHLHIIVGGSNTYIEALV 239
P D PEE F CE +R A++ IE+ H+H ++ G I+A V
Sbjct: 266 PNTDAPEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADV 315
>pdb|3BG6|A Chain A, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|B Chain B, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|C Chain C, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|D Chain D, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|E Chain E, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|F Chain F, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|G Chain G, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
pdb|3BG6|H Chain H, Pyranose 2-Oxidase From Trametes Multicolor, E542k Mutant
Length = 623
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Query: 198 PEADYPEEEF-------CEHALR-AIDKIIENGHLHIIVGGSNTYIEALV 239
P D PEE F CE +R A++ IE+ H+H ++ G I+A V
Sbjct: 266 PNTDAPEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADV 315
>pdb|3LSH|A Chain A, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSH|B Chain B, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSH|C Chain C, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSH|D Chain D, Pyranose 2-Oxidase T169a, Monoclinic
pdb|3LSI|A Chain A, Pyranose 2-Oxidase T169a, Tetragonal
pdb|3LSI|B Chain B, Pyranose 2-Oxidase T169a, Tetragonal
Length = 623
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Query: 198 PEADYPEEEF-------CEHALR-AIDKIIENGHLHIIVGGSNTYIEALV 239
P D PEE F CE +R A++ IE+ H+H ++ G I+A V
Sbjct: 266 PNTDAPEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADV 315
>pdb|2F6C|A Chain A, Reaction Geometry And Thermostability Of Pyranose
2-Oxidase From The White-Rot Fungus Peniophora Sp.,
Thermostability Mutant E542k
Length = 595
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Query: 198 PEADYPEEEF-------CEHALR-AIDKIIENGHLHIIVGGSNTYIEALV 239
P D PEE F CE +R A++ IE+ H+H ++ G I+A V
Sbjct: 238 PNTDAPEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADV 287
>pdb|2F5V|A Chain A, Reaction Geometry And Thermostability Mutant Of Pyranose
2-Oxidase From The White-Rot Fungus Peniophora Sp
Length = 595
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Query: 198 PEADYPEEEF-------CEHALR-AIDKIIENGHLHIIVGGSNTYIEALV 239
P D PEE F CE +R A++ IE+ H+H ++ G I+A V
Sbjct: 238 PNTDAPEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADV 287
>pdb|1TZL|A Chain A, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|B Chain B, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|C Chain C, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|D Chain D, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|E Chain E, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|F Chain F, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|G Chain G, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp.
pdb|1TZL|H Chain H, Crystal Structure Of Pyranose 2-Oxidase From The White-Rot
Fungus Peniophora Sp
Length = 622
Score = 30.0 bits (66), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 8/50 (16%)
Query: 198 PEADYPEEEF-------CEHALR-AIDKIIENGHLHIIVGGSNTYIEALV 239
P D PEE F CE +R A++ IE+ H+H ++ G I+A V
Sbjct: 265 PNTDAPEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADV 314
>pdb|1X0V|A Chain A, Crystal Structure Of Homo Sapien Glycerol-3-Phosphate
Dehydrogenase 1
pdb|1X0V|B Chain B, Crystal Structure Of Homo Sapien Glycerol-3-Phosphate
Dehydrogenase 1
Length = 354
Score = 28.9 bits (63), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 163 NSNKIQVYKGLDIATNKV-----TASERQGVPHHLLGFVDPEADYPEEEFCEHALRAID 216
N+ I + KG+D N + ER G+P +L + ++ +E+FCE + D
Sbjct: 117 NATGISLIKGVDEGPNGLKLISEVIGERLGIPXSVLXGANIASEVADEKFCETTIGCKD 175
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
pdb|2ICV|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
Length = 291
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 117 SKNLVYTRVI--TMNFNKKKVVFVMGATATGKTKL 149
K+ Y R +N N ++VV +MGA A GKT+L
Sbjct: 145 DKDAGYVRTFFQRLNMNDREVVALMGAHALGKTEL 179
>pdb|3GGR|A Chain A, Crystal Structure Of The Human Rad9-Hus1-Rad1 Complex
Length = 270
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 5 HNVIYQNCLQLNSILEPSLCTQMNR 29
HN+ +Q+C L ++ +P+ C M R
Sbjct: 122 HNLSFQDCESLQAVFDPASCPHMLR 146
>pdb|3G65|A Chain A, Crystal Structure Of The Human Rad9-Rad1-Hus1 Dna Damage
Checkpoint Complex
Length = 296
Score = 28.5 bits (62), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 5 HNVIYQNCLQLNSILEPSLCTQMNR 29
HN+ +Q+C L ++ +P+ C M R
Sbjct: 122 HNLSFQDCESLQAVFDPASCPHMLR 146
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 116 ISKNLVYTRVI--TMNFNKKKVVFVMGATATGKTKL 149
+ K+ Y R +N N ++VV +MGA A GKT L
Sbjct: 147 MDKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 182
>pdb|2GLJ|A Chain A, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|B Chain B, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|C Chain C, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|D Chain D, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|E Chain E, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|F Chain F, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|G Chain G, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|H Chain H, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|I Chain I, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|J Chain J, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|K Chain K, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|L Chain L, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|M Chain M, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|N Chain N, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|O Chain O, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|P Chain P, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|Q Chain Q, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|R Chain R, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|S Chain S, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|T Chain T, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|U Chain U, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|V Chain V, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|W Chain W, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
pdb|2GLJ|X Chain X, Crystal Structure Of Aminopeptidase I From Clostridium
Acetobutylicum
Length = 461
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/69 (21%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 152 DLAIHFSGEAINSNKIQVYKGLDI-----ATNKVTASERQGVPHHLLGFVDPEADYPEEE 206
D+ +H + E + +V +G D+ + E+Q V H+++ ++ + D EE+
Sbjct: 172 DILVHLASEQLEKKASKVIEGEDLNILIGSIPLKDGEEKQKVKHNIMKILNEKYDISEED 231
Query: 207 FCEHALRAI 215
F L +
Sbjct: 232 FVSAELEIV 240
>pdb|3IFS|A Chain A, 2.0 Angstrom Resolution Crystal Structure Of
Glucose-6-Phosphate Isomerase (Pgi) From Bacillus
Anthracis.
pdb|3IFS|B Chain B, 2.0 Angstrom Resolution Crystal Structure Of
Glucose-6-Phosphate Isomerase (Pgi) From Bacillus
Anthracis.
pdb|3IFS|C Chain C, 2.0 Angstrom Resolution Crystal Structure Of
Glucose-6-Phosphate Isomerase (Pgi) From Bacillus
Anthracis.
pdb|3IFS|D Chain D, 2.0 Angstrom Resolution Crystal Structure Of
Glucose-6-Phosphate Isomerase (Pgi) From Bacillus
Anthracis.
pdb|3IFS|E Chain E, 2.0 Angstrom Resolution Crystal Structure Of
Glucose-6-Phosphate Isomerase (Pgi) From Bacillus
Anthracis.
pdb|3IFS|F Chain F, 2.0 Angstrom Resolution Crystal Structure Of
Glucose-6-Phosphate Isomerase (Pgi) From Bacillus
Anthracis
Length = 453
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Query: 184 ERQGVPHHLLGFVDPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEA 237
E+ G + LG+VD Y +EEF + +KI + + ++VG +Y+ A
Sbjct: 40 EKTGAGNDFLGWVDLPLQYDKEEFA-RIQKCAEKIKNDSDILLVVGIGGSYLGA 92
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 27.3 bits (59), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 117 SKNLVYTRVI--TMNFNKKKVVFVMGATATGKTKL 149
K+ Y R +N N ++VV +MGA A GKT L
Sbjct: 148 DKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL 182
>pdb|4ACV|B Chain B, Listeria Monocytogenes Antigen B
Length = 129
Score = 27.3 bits (59), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 79 ERWLIVVHPSDCLIFAGFSRAAGFWIPQVDHRGKSNFISKN 119
E+ L V D LI GF G+ + V H GK N + +N
Sbjct: 68 EQDLAGVEMIDTLIQMGFILPEGYKLVAVRHCGKQNLVKEN 108
>pdb|4ACV|A Chain A, Listeria Monocytogenes Antigen B
Length = 129
Score = 27.3 bits (59), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 79 ERWLIVVHPSDCLIFAGFSRAAGFWIPQVDHRGKSNFISKN 119
E+ L V D LI GF G+ + V H GK N + +N
Sbjct: 68 EQDLAGVEMIDTLIQMGFILPEGYKLVAVRHCGKQNLVKEN 108
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,447,354
Number of Sequences: 62578
Number of extensions: 290506
Number of successful extensions: 972
Number of sequences better than 100.0: 37
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 959
Number of HSP's gapped (non-prelim): 37
length of query: 251
length of database: 14,973,337
effective HSP length: 96
effective length of query: 155
effective length of database: 8,965,849
effective search space: 1389706595
effective search space used: 1389706595
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)