Query 045245
Match_columns 251
No_of_seqs 131 out of 1361
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 11:16:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045245.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045245hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14729 miaA tRNA delta(2)-is 100.0 1.9E-36 4.2E-41 278.6 11.7 112 131-243 2-113 (300)
2 COG0324 MiaA tRNA delta(2)-iso 100.0 1.1E-35 2.3E-40 275.2 12.3 112 132-243 2-113 (308)
3 PLN02748 tRNA dimethylallyltra 100.0 1.4E-34 3.1E-39 279.7 12.3 115 129-243 18-132 (468)
4 PLN02840 tRNA dimethylallyltra 100.0 1.5E-33 3.2E-38 269.9 12.2 115 129-243 17-131 (421)
5 TIGR00174 miaA tRNA isopenteny 100.0 1.9E-33 4.2E-38 257.3 11.2 109 135-243 1-109 (287)
6 PRK00091 miaA tRNA delta(2)-is 100.0 1.2E-32 2.7E-37 253.3 12.4 113 131-243 2-114 (307)
7 KOG1384 tRNA delta(2)-isopente 100.0 1.5E-30 3.3E-35 243.2 9.7 110 132-241 6-115 (348)
8 PLN02165 adenylate isopentenyl 100.0 1.3E-29 2.7E-34 236.9 10.9 112 131-242 41-153 (334)
9 PF01715 IPPT: IPP transferase 99.9 2.1E-23 4.5E-28 187.1 6.4 77 167-243 1-77 (253)
10 PF01745 IPT: Isopentenyl tran 99.8 3.2E-20 7E-25 166.5 9.1 108 134-242 2-110 (233)
11 COG0194 Gmk Guanylate kinase [ 99.5 7.3E-15 1.6E-19 129.1 3.4 87 132-228 3-99 (191)
12 PRK14737 gmk guanylate kinase; 99.5 1.3E-14 2.7E-19 124.4 2.0 89 131-228 2-100 (186)
13 cd00071 GMPK Guanosine monopho 99.4 2.4E-13 5.2E-18 110.8 3.9 98 135-241 1-108 (137)
14 PF00625 Guanylate_kin: Guanyl 99.4 7.9E-14 1.7E-18 116.8 0.5 91 132-230 1-101 (183)
15 PRK00300 gmk guanylate kinase; 99.3 2.9E-13 6.2E-18 113.8 2.2 103 130-241 2-117 (205)
16 TIGR03263 guanyl_kin guanylate 99.3 2.2E-13 4.8E-18 112.1 1.3 97 133-238 1-110 (180)
17 smart00072 GuKc Guanylate kina 99.2 3.1E-12 6.8E-17 107.7 2.7 90 133-230 2-101 (184)
18 PRK04220 2-phosphoglycerate ki 99.2 1.8E-11 3.9E-16 113.9 4.7 169 41-233 7-200 (301)
19 PRK14738 gmk guanylate kinase; 99.1 1.9E-11 4.2E-16 105.3 2.2 99 131-239 11-119 (206)
20 PLN02772 guanylate kinase 99.1 3.7E-11 8E-16 115.5 3.9 99 131-237 133-244 (398)
21 PRK10078 ribose 1,5-bisphospho 98.7 1.2E-08 2.7E-13 85.9 5.1 96 133-241 2-107 (186)
22 PRK00131 aroK shikimate kinase 98.7 2.6E-08 5.5E-13 80.3 6.0 85 130-233 1-85 (175)
23 PF13207 AAA_17: AAA domain; P 98.7 1.7E-08 3.7E-13 77.7 3.9 33 135-167 1-33 (121)
24 PRK05057 aroK shikimate kinase 98.6 1.1E-07 2.4E-12 80.1 7.0 83 132-233 3-85 (172)
25 PRK08356 hypothetical protein; 98.6 5.9E-08 1.3E-12 82.5 5.3 66 133-210 5-70 (195)
26 PRK06217 hypothetical protein; 98.6 4.2E-07 9.1E-12 76.4 9.3 35 134-168 2-36 (183)
27 KOG0707 Guanylate kinase [Nucl 98.5 1.3E-07 2.7E-12 85.8 6.1 83 134-227 38-133 (231)
28 COG0572 Udk Uridine kinase [Nu 98.5 5.7E-08 1.2E-12 87.3 2.7 54 131-190 6-62 (218)
29 PF13671 AAA_33: AAA domain; P 98.5 4.2E-07 9.2E-12 71.5 6.8 33 135-167 1-33 (143)
30 TIGR01313 therm_gnt_kin carboh 98.5 4.3E-07 9.3E-12 74.0 6.9 33 136-168 1-33 (163)
31 TIGR02322 phosphon_PhnN phosph 98.4 1.7E-07 3.7E-12 77.5 3.7 96 134-240 2-107 (179)
32 PRK08118 topology modulation p 98.4 2.6E-07 5.6E-12 77.8 4.6 37 134-170 2-38 (167)
33 cd00464 SK Shikimate kinase (S 98.4 3.6E-07 7.8E-12 72.7 5.1 32 136-167 2-33 (154)
34 PRK07261 topology modulation p 98.4 3.1E-07 6.6E-12 77.4 4.8 38 135-172 2-39 (171)
35 PRK13946 shikimate kinase; Pro 98.4 4.1E-07 8.8E-12 76.9 4.6 35 132-166 9-43 (184)
36 PRK06547 hypothetical protein; 98.3 7E-07 1.5E-11 76.2 4.9 42 130-173 12-53 (172)
37 PRK05800 cobU adenosylcobinami 98.3 6E-07 1.3E-11 76.4 4.3 92 134-240 2-94 (170)
38 PRK13947 shikimate kinase; Pro 98.3 1.8E-06 3.9E-11 70.5 5.9 33 135-167 3-35 (171)
39 cd00227 CPT Chloramphenicol (C 98.3 2.3E-06 4.9E-11 71.4 6.5 88 133-230 2-93 (175)
40 cd02020 CMPK Cytidine monophos 98.2 9.7E-07 2.1E-11 69.4 3.7 31 135-165 1-31 (147)
41 PTZ00301 uridine kinase; Provi 98.2 1.5E-06 3.3E-11 76.6 5.1 35 133-167 3-44 (210)
42 cd02024 NRK1 Nicotinamide ribo 98.2 2.2E-06 4.9E-11 74.5 6.1 34 135-168 1-35 (187)
43 PRK14527 adenylate kinase; Pro 98.2 1.1E-06 2.5E-11 74.1 3.7 38 130-167 3-40 (191)
44 PF00004 AAA: ATPase family as 98.2 5.6E-06 1.2E-10 63.4 7.2 32 136-167 1-32 (132)
45 TIGR01359 UMP_CMP_kin_fam UMP- 98.2 1.3E-06 2.9E-11 72.1 3.8 33 135-167 1-33 (183)
46 PRK13949 shikimate kinase; Pro 98.2 2.3E-06 4.9E-11 72.2 5.0 34 134-167 2-35 (169)
47 PRK08233 hypothetical protein; 98.2 2.3E-06 5E-11 69.9 4.9 35 133-167 3-38 (182)
48 TIGR01360 aden_kin_iso1 adenyl 98.2 1.4E-06 3E-11 71.5 3.5 35 133-167 3-37 (188)
49 PRK05480 uridine/cytidine kina 98.2 2.3E-06 5E-11 72.9 5.0 38 130-167 3-43 (209)
50 PRK06762 hypothetical protein; 98.2 1.3E-06 2.8E-11 71.4 3.3 35 133-167 2-38 (166)
51 cd02021 GntK Gluconate kinase 98.2 1.8E-06 3.8E-11 69.4 3.9 33 135-167 1-33 (150)
52 PRK03839 putative kinase; Prov 98.2 2E-06 4.3E-11 71.5 4.0 33 135-167 2-34 (180)
53 PRK13948 shikimate kinase; Pro 98.1 3.5E-06 7.6E-11 72.8 5.7 37 131-167 8-44 (182)
54 PRK14530 adenylate kinase; Pro 98.1 2.2E-06 4.7E-11 73.8 4.2 35 133-167 3-37 (215)
55 cd00009 AAA The AAA+ (ATPases 98.1 1.1E-05 2.4E-10 60.6 7.0 37 132-168 18-57 (151)
56 PRK06696 uridine kinase; Valid 98.1 3.9E-06 8.5E-11 72.9 5.1 41 128-168 17-62 (223)
57 PRK14531 adenylate kinase; Pro 98.1 3.7E-06 8E-11 70.9 4.5 34 134-167 3-36 (183)
58 PRK03731 aroL shikimate kinase 98.1 2.5E-06 5.5E-11 70.0 3.2 34 134-167 3-36 (171)
59 cd01428 ADK Adenylate kinase ( 98.1 3E-06 6.5E-11 70.1 3.6 32 136-167 2-33 (194)
60 COG0563 Adk Adenylate kinase a 98.1 2.9E-06 6.3E-11 73.0 3.6 33 135-167 2-34 (178)
61 TIGR00017 cmk cytidylate kinas 98.1 1E-05 2.2E-10 71.3 7.1 38 134-173 3-40 (217)
62 PRK14532 adenylate kinase; Pro 98.1 3.5E-06 7.6E-11 70.4 3.8 33 135-167 2-34 (188)
63 PLN02200 adenylate kinase fami 98.1 4.3E-06 9.4E-11 74.4 4.6 39 129-167 39-77 (234)
64 TIGR00235 udk uridine kinase. 98.1 5.1E-06 1.1E-10 71.2 4.7 38 130-167 3-43 (207)
65 PHA02530 pseT polynucleotide k 98.0 4.1E-06 8.9E-11 74.6 4.2 35 133-167 2-37 (300)
66 PRK05541 adenylylsulfate kinas 98.0 1.2E-05 2.6E-10 66.6 6.7 28 131-158 5-32 (176)
67 PRK12338 hypothetical protein; 98.0 1E-05 2.3E-10 76.2 7.0 37 131-167 2-39 (319)
68 PRK00625 shikimate kinase; Pro 98.0 4.7E-06 1E-10 71.3 4.0 33 135-167 2-34 (173)
69 PRK00023 cmk cytidylate kinase 98.0 9E-06 2E-10 71.7 5.7 39 132-172 3-41 (225)
70 PTZ00088 adenylate kinase 1; P 98.0 7.9E-06 1.7E-10 72.9 4.8 34 134-167 7-40 (229)
71 KOG0609 Calcium/calmodulin-dep 98.0 8.7E-06 1.9E-10 81.2 5.2 96 125-228 332-437 (542)
72 TIGR02173 cyt_kin_arch cytidyl 98.0 7.6E-06 1.6E-10 66.2 3.8 33 135-167 2-34 (171)
73 PRK14528 adenylate kinase; Pro 98.0 8E-06 1.7E-10 69.5 4.1 34 134-167 2-35 (186)
74 PRK01184 hypothetical protein; 97.9 9.5E-06 2.1E-10 67.5 4.3 31 134-165 2-32 (184)
75 PRK00279 adk adenylate kinase; 97.9 1E-05 2.2E-10 69.7 4.6 33 135-167 2-34 (215)
76 PRK02496 adk adenylate kinase; 97.9 7.6E-06 1.6E-10 68.3 3.6 34 134-167 2-35 (184)
77 smart00382 AAA ATPases associa 97.9 1.3E-05 2.9E-10 59.1 4.5 28 133-160 2-29 (148)
78 PF00485 PRK: Phosphoribulokin 97.9 8.5E-06 1.8E-10 69.1 4.0 33 135-167 1-42 (194)
79 TIGR01351 adk adenylate kinase 97.9 7.7E-06 1.7E-10 70.2 3.7 32 136-167 2-33 (210)
80 COG1102 Cmk Cytidylate kinase 97.9 7.8E-06 1.7E-10 71.7 3.7 37 135-173 2-38 (179)
81 PRK12339 2-phosphoglycerate ki 97.9 1.4E-05 3.1E-10 69.7 5.3 36 132-167 2-38 (197)
82 PRK04182 cytidylate kinase; Pr 97.9 8.9E-06 1.9E-10 66.2 3.7 32 135-166 2-33 (180)
83 PRK15453 phosphoribulokinase; 97.9 7.9E-06 1.7E-10 76.3 3.7 40 131-170 3-47 (290)
84 KOG3308 Uncharacterized protei 97.9 1.6E-05 3.6E-10 71.8 5.4 39 131-171 2-41 (225)
85 PF13238 AAA_18: AAA domain; P 97.9 9.4E-06 2E-10 61.9 3.2 22 136-157 1-22 (129)
86 PRK08154 anaerobic benzoate ca 97.9 1.8E-05 3.9E-10 72.8 5.4 88 126-232 126-213 (309)
87 PF13173 AAA_14: AAA domain 97.9 2.2E-05 4.7E-10 62.5 5.1 90 133-235 2-101 (128)
88 PF06414 Zeta_toxin: Zeta toxi 97.9 2.5E-05 5.5E-10 66.6 5.6 84 130-229 12-100 (199)
89 PRK07667 uridine kinase; Provi 97.9 2.1E-05 4.5E-10 67.2 5.0 40 128-167 12-56 (193)
90 cd02025 PanK Pantothenate kina 97.9 2.2E-05 4.8E-10 69.1 5.2 33 135-167 1-40 (220)
91 PRK12337 2-phosphoglycerate ki 97.8 3.3E-05 7.2E-10 76.4 6.9 43 131-173 253-297 (475)
92 PRK05439 pantothenate kinase; 97.8 3.4E-05 7.4E-10 72.3 6.5 40 129-168 82-128 (311)
93 PRK14730 coaE dephospho-CoA ki 97.8 1.5E-05 3.3E-10 68.8 3.9 34 134-167 2-35 (195)
94 PLN02674 adenylate kinase 97.8 1.8E-05 3.8E-10 71.8 4.3 41 127-167 25-65 (244)
95 cd02023 UMPK Uridine monophosp 97.8 1.6E-05 3.5E-10 67.0 3.7 33 135-167 1-36 (198)
96 TIGR03574 selen_PSTK L-seryl-t 97.8 4.1E-05 8.9E-10 67.3 6.1 24 135-158 1-24 (249)
97 PRK00081 coaE dephospho-CoA ki 97.8 2.3E-05 5.1E-10 67.1 4.2 33 134-167 3-35 (194)
98 TIGR00554 panK_bact pantothena 97.8 4.2E-05 9.1E-10 70.9 6.2 39 130-168 59-104 (290)
99 PRK13477 bifunctional pantoate 97.8 2E-05 4.4E-10 78.3 4.3 41 131-173 282-322 (512)
100 PF00448 SRP54: SRP54-type pro 97.8 2.7E-05 5.8E-10 67.7 4.1 35 133-167 1-40 (196)
101 cd02022 DPCK Dephospho-coenzym 97.7 2.3E-05 5.1E-10 65.9 3.5 32 135-167 1-32 (179)
102 PRK04040 adenylate kinase; Pro 97.7 3.2E-05 7E-10 66.6 4.4 35 133-167 2-38 (188)
103 cd02028 UMPK_like Uridine mono 97.7 2.2E-05 4.8E-10 66.7 3.4 34 135-168 1-39 (179)
104 PF07931 CPT: Chloramphenicol 97.7 0.00011 2.4E-09 63.6 7.5 101 134-243 2-110 (174)
105 PF00406 ADK: Adenylate kinase 97.7 1.8E-05 3.9E-10 64.2 2.4 30 138-167 1-30 (151)
106 COG0703 AroK Shikimate kinase 97.7 3E-05 6.5E-10 67.6 3.9 80 134-232 3-82 (172)
107 PRK06893 DNA replication initi 97.7 0.00011 2.4E-09 64.4 6.9 91 132-231 38-133 (229)
108 TIGR01663 PNK-3'Pase polynucle 97.7 0.0001 2.2E-09 73.5 7.0 38 130-167 366-403 (526)
109 PLN02348 phosphoribulokinase 97.6 5.8E-05 1.3E-09 73.2 4.9 42 128-169 44-105 (395)
110 PRK14731 coaE dephospho-CoA ki 97.6 6.9E-05 1.5E-09 65.0 4.9 36 131-167 3-38 (208)
111 PRK07429 phosphoribulokinase; 97.6 6.6E-05 1.4E-09 70.5 4.7 39 129-167 4-45 (327)
112 PRK14733 coaE dephospho-CoA ki 97.6 7.1E-05 1.5E-09 66.1 4.7 36 132-167 5-40 (204)
113 COG2074 2-phosphoglycerate kin 97.6 7.6E-05 1.6E-09 69.7 4.8 42 126-167 82-124 (299)
114 cd02019 NK Nucleoside/nucleoti 97.6 6.7E-05 1.5E-09 54.6 3.5 23 135-157 1-23 (69)
115 PRK08084 DNA replication initi 97.6 0.00012 2.5E-09 64.7 5.7 106 132-249 44-155 (235)
116 PRK00889 adenylylsulfate kinas 97.6 7E-05 1.5E-09 62.0 4.0 37 131-167 2-43 (175)
117 PF06309 Torsin: Torsin; Inte 97.6 0.00035 7.7E-09 58.4 8.1 77 128-226 48-124 (127)
118 PRK11545 gntK gluconate kinase 97.6 0.00024 5.2E-09 59.4 7.2 29 139-167 1-29 (163)
119 cd02027 APSK Adenosine 5'-phos 97.6 0.00018 3.9E-09 59.3 6.3 23 135-157 1-23 (149)
120 PLN02199 shikimate kinase 97.6 9.2E-05 2E-09 69.7 5.1 82 130-230 99-181 (303)
121 TIGR02881 spore_V_K stage V sp 97.6 0.00013 2.8E-09 64.9 5.6 27 131-157 40-66 (261)
122 PRK14021 bifunctional shikimat 97.5 8E-05 1.7E-09 73.8 4.5 81 132-231 5-85 (542)
123 PRK09270 nucleoside triphospha 97.5 0.00011 2.4E-09 64.1 4.8 39 129-167 29-73 (229)
124 PRK03846 adenylylsulfate kinas 97.5 9.7E-05 2.1E-09 63.0 4.3 32 126-157 17-48 (198)
125 cd00544 CobU Adenosylcobinamid 97.5 8E-05 1.7E-09 63.6 3.8 91 135-241 1-92 (169)
126 KOG3354 Gluconate kinase [Carb 97.5 7.4E-05 1.6E-09 65.8 3.6 41 128-168 7-47 (191)
127 TIGR00152 dephospho-CoA kinase 97.5 7.2E-05 1.6E-09 63.0 3.4 33 135-167 1-33 (188)
128 PF08433 KTI12: Chromatin asso 97.5 0.00012 2.6E-09 67.0 4.8 82 134-241 2-88 (270)
129 PRK09825 idnK D-gluconate kina 97.5 0.00012 2.6E-09 62.3 4.5 35 133-167 3-37 (176)
130 COG0283 Cmk Cytidylate kinase 97.5 8.7E-05 1.9E-09 67.3 3.7 38 134-173 5-42 (222)
131 COG0396 sufC Cysteine desulfur 97.5 0.00021 4.6E-09 65.7 6.1 83 129-216 26-110 (251)
132 PRK14526 adenylate kinase; Pro 97.5 0.00012 2.6E-09 64.4 4.1 33 135-167 2-34 (211)
133 PRK11860 bifunctional 3-phosph 97.5 9.3E-05 2E-09 74.7 3.9 39 133-173 442-480 (661)
134 PF07728 AAA_5: AAA domain (dy 97.5 0.00013 2.8E-09 57.8 3.9 26 136-161 2-27 (139)
135 PRK13975 thymidylate kinase; P 97.5 0.00017 3.7E-09 60.1 4.8 28 133-160 2-29 (196)
136 PRK14734 coaE dephospho-CoA ki 97.4 0.00014 3.1E-09 63.0 4.1 33 134-167 2-34 (200)
137 PLN02459 probable adenylate ki 97.4 0.00017 3.6E-09 66.4 4.6 34 134-167 30-63 (261)
138 COG1428 Deoxynucleoside kinase 97.4 0.00017 3.6E-09 65.2 4.3 31 132-162 3-33 (216)
139 COG0237 CoaE Dephospho-CoA kin 97.4 0.00016 3.5E-09 63.8 4.1 34 133-167 2-35 (201)
140 TIGR00455 apsK adenylylsulfate 97.4 0.00017 3.8E-09 60.2 3.8 31 127-157 12-42 (184)
141 cd01672 TMPK Thymidine monopho 97.4 0.00021 4.7E-09 58.4 4.2 25 134-158 1-25 (200)
142 PRK09518 bifunctional cytidyla 97.4 0.00016 3.6E-09 73.5 4.2 39 134-174 2-40 (712)
143 PTZ00451 dephospho-CoA kinase; 97.4 0.00017 3.7E-09 65.4 3.9 34 134-167 2-35 (244)
144 PRK00698 tmk thymidylate kinas 97.4 0.00017 3.7E-09 60.1 3.6 27 132-158 2-28 (205)
145 PF01926 MMR_HSR1: 50S ribosom 97.4 0.0011 2.4E-08 51.0 7.8 59 135-202 1-61 (116)
146 cd02029 PRK_like Phosphoribulo 97.3 0.00015 3.2E-09 67.6 3.3 35 135-169 1-40 (277)
147 PRK13951 bifunctional shikimat 97.3 0.00028 6.1E-09 69.4 5.4 33 135-167 2-34 (488)
148 PRK06761 hypothetical protein; 97.3 0.00035 7.6E-09 64.8 5.6 33 133-165 3-35 (282)
149 TIGR00041 DTMP_kinase thymidyl 97.3 0.00018 3.8E-09 60.0 3.2 27 133-159 3-29 (195)
150 COG2805 PilT Tfp pilus assembl 97.3 0.00049 1.1E-08 65.7 6.4 28 131-158 123-150 (353)
151 PF13521 AAA_28: AAA domain; P 97.3 0.00019 4.2E-09 58.7 3.3 27 135-162 1-27 (163)
152 PRK09087 hypothetical protein; 97.3 0.0011 2.3E-08 58.8 8.2 82 132-229 43-124 (226)
153 PLN02318 phosphoribulokinase/u 97.3 0.00026 5.7E-09 72.3 4.8 39 129-167 61-100 (656)
154 PF05496 RuvB_N: Holliday junc 97.3 0.00044 9.6E-09 63.1 5.7 83 133-229 50-135 (233)
155 PLN03046 D-glycerate 3-kinase; 97.3 0.00056 1.2E-08 67.6 6.7 39 130-168 209-252 (460)
156 cd03115 SRP The signal recogni 97.3 0.00076 1.7E-08 55.6 6.6 33 135-167 2-39 (173)
157 PF01121 CoaE: Dephospho-CoA k 97.3 0.0002 4.4E-09 61.8 3.1 32 135-167 2-33 (180)
158 PRK08903 DnaA regulatory inact 97.3 0.0013 2.8E-08 56.7 8.0 27 131-157 40-66 (227)
159 PF13401 AAA_22: AAA domain; P 97.3 0.00025 5.4E-09 54.8 3.3 26 132-157 3-28 (131)
160 PRK06620 hypothetical protein; 97.3 0.0012 2.6E-08 58.0 7.9 30 134-163 45-74 (214)
161 PF07724 AAA_2: AAA domain (Cd 97.2 0.00039 8.5E-09 59.3 4.4 88 134-222 4-106 (171)
162 PRK13808 adenylate kinase; Pro 97.2 0.00027 5.9E-09 67.0 3.8 33 135-167 2-34 (333)
163 TIGR00750 lao LAO/AO transport 97.2 0.0015 3.2E-08 59.8 8.4 39 129-167 30-73 (300)
164 PRK14529 adenylate kinase; Pro 97.2 0.00029 6.3E-09 63.1 3.6 31 135-165 2-32 (223)
165 COG0645 Predicted kinase [Gene 97.2 0.0015 3.4E-08 57.1 7.9 34 134-167 2-35 (170)
166 PRK05201 hslU ATP-dependent pr 97.2 0.00039 8.4E-09 68.5 4.4 35 133-167 50-84 (443)
167 COG1936 Predicted nucleotide k 97.2 0.00036 7.8E-09 61.6 3.7 30 134-164 1-30 (180)
168 COG3265 GntK Gluconate kinase 97.2 0.00086 1.9E-08 58.3 6.0 72 139-227 1-72 (161)
169 PRK10751 molybdopterin-guanine 97.2 0.00039 8.5E-09 60.3 3.8 30 129-158 2-31 (173)
170 COG1419 FlhF Flagellar GTP-bin 97.2 0.00035 7.5E-09 68.2 3.8 37 131-167 201-244 (407)
171 COG4088 Predicted nucleotide k 97.2 0.00056 1.2E-08 62.8 4.9 25 134-158 2-26 (261)
172 cd02026 PRK Phosphoribulokinas 97.2 0.00037 8E-09 63.6 3.8 33 135-167 1-36 (273)
173 TIGR00390 hslU ATP-dependent p 97.2 0.00046 1E-08 67.9 4.7 37 132-168 46-82 (441)
174 smart00763 AAA_PrkA PrkA AAA d 97.2 0.00035 7.6E-09 67.1 3.7 30 130-159 75-104 (361)
175 TIGR00150 HI0065_YjeE ATPase, 97.1 0.00054 1.2E-08 57.2 4.4 34 126-159 15-48 (133)
176 PLN02796 D-glycerate 3-kinase 97.1 0.00051 1.1E-08 65.7 4.8 38 131-168 98-140 (347)
177 PRK14732 coaE dephospho-CoA ki 97.1 0.00037 8E-09 60.6 3.5 32 135-167 1-32 (196)
178 PRK03333 coaE dephospho-CoA ki 97.1 0.00037 8E-09 66.7 3.7 33 134-167 2-34 (395)
179 PLN02422 dephospho-CoA kinase 97.1 0.00046 1E-08 62.3 3.8 33 134-167 2-34 (232)
180 cd02030 NDUO42 NADH:Ubiquinone 97.1 0.0012 2.6E-08 57.5 6.2 31 135-165 1-31 (219)
181 COG1341 Predicted GTPase or GT 97.1 0.0034 7.4E-08 61.2 9.9 114 130-245 70-202 (398)
182 TIGR01425 SRP54_euk signal rec 97.1 0.00071 1.5E-08 66.2 5.2 37 131-167 98-139 (429)
183 PRK13973 thymidylate kinase; P 97.1 0.00081 1.8E-08 58.3 4.9 25 133-157 3-27 (213)
184 TIGR03420 DnaA_homol_Hda DnaA 97.1 0.00068 1.5E-08 57.5 4.4 27 131-157 36-62 (226)
185 cd01131 PilT Pilus retraction 97.1 0.00048 1E-08 59.2 3.4 24 135-158 3-26 (198)
186 PF05729 NACHT: NACHT domain 97.1 0.00051 1.1E-08 54.2 3.2 25 134-158 1-25 (166)
187 TIGR00635 ruvB Holliday juncti 97.0 0.00082 1.8E-08 60.1 4.8 30 132-161 29-58 (305)
188 TIGR02640 gas_vesic_GvpN gas v 97.0 0.00064 1.4E-08 60.9 4.1 31 132-162 20-50 (262)
189 COG1618 Predicted nucleotide k 97.0 0.0024 5.1E-08 56.4 7.4 28 131-158 3-30 (179)
190 PRK10867 signal recognition pa 97.0 0.0019 4.1E-08 63.2 7.5 37 131-167 98-140 (433)
191 PRK04195 replication factor C 97.0 0.00085 1.8E-08 65.2 4.9 33 133-165 39-71 (482)
192 PF01202 SKI: Shikimate kinase 97.0 0.00021 4.5E-09 59.1 0.6 71 142-231 1-71 (158)
193 PRK12723 flagellar biosynthesi 97.0 0.00075 1.6E-08 65.1 4.4 37 131-167 172-217 (388)
194 PF13191 AAA_16: AAA ATPase do 97.0 0.00059 1.3E-08 55.2 3.2 30 129-158 20-49 (185)
195 PRK05342 clpX ATP-dependent pr 97.0 0.00072 1.6E-08 65.5 4.2 35 133-167 108-142 (412)
196 PF00308 Bac_DnaA: Bacterial d 97.0 0.0025 5.4E-08 56.0 7.3 96 132-229 33-137 (219)
197 PF03215 Rad17: Rad17 cell cyc 97.0 0.00083 1.8E-08 67.0 4.7 33 131-163 43-75 (519)
198 PRK12269 bifunctional cytidyla 97.0 0.00062 1.3E-08 71.6 3.8 39 133-173 34-72 (863)
199 cd01130 VirB11-like_ATPase Typ 97.0 0.00073 1.6E-08 57.2 3.6 28 131-158 23-50 (186)
200 PRK03992 proteasome-activating 97.0 0.0009 1.9E-08 63.6 4.4 36 131-166 163-198 (389)
201 PRK05642 DNA replication initi 96.9 0.0017 3.7E-08 57.4 5.8 89 133-231 45-138 (234)
202 TIGR03499 FlhF flagellar biosy 96.9 0.00076 1.6E-08 61.5 3.7 37 131-167 192-235 (282)
203 PF01583 APS_kinase: Adenylyls 96.9 0.00086 1.9E-08 57.4 3.8 27 132-158 1-27 (156)
204 TIGR01242 26Sp45 26S proteasom 96.9 0.0011 2.5E-08 61.7 4.9 35 131-165 154-188 (364)
205 COG2256 MGS1 ATPase related to 96.9 0.00055 1.2E-08 67.1 2.9 29 134-162 49-77 (436)
206 cd01129 PulE-GspE PulE/GspE Th 96.9 0.0056 1.2E-07 55.5 9.2 26 133-158 80-105 (264)
207 PRK08099 bifunctional DNA-bind 96.9 0.00094 2E-08 64.3 4.4 32 131-162 217-248 (399)
208 PRK00080 ruvB Holliday junctio 96.9 0.0011 2.3E-08 60.9 4.5 32 131-162 49-80 (328)
209 TIGR03015 pepcterm_ATPase puta 96.9 0.00089 1.9E-08 58.3 3.8 27 132-158 42-68 (269)
210 PRK10416 signal recognition pa 96.9 0.00097 2.1E-08 62.3 4.3 37 131-167 112-153 (318)
211 PF06068 TIP49: TIP49 C-termin 96.9 0.0011 2.5E-08 64.4 4.7 41 130-170 47-89 (398)
212 PF02367 UPF0079: Uncharacteri 96.9 0.001 2.2E-08 55.0 3.8 34 126-159 8-41 (123)
213 KOG3347 Predicted nucleotide k 96.9 0.00088 1.9E-08 58.7 3.6 32 133-164 7-38 (176)
214 TIGR00959 ffh signal recogniti 96.9 0.0037 8E-08 61.0 8.2 37 131-167 97-139 (428)
215 COG0529 CysC Adenylylsulfate k 96.9 0.0044 9.6E-08 55.4 7.9 33 126-158 16-48 (197)
216 cd01673 dNK Deoxyribonucleosid 96.9 0.00083 1.8E-08 56.2 3.2 28 135-162 1-28 (193)
217 CHL00195 ycf46 Ycf46; Provisio 96.9 0.0011 2.3E-08 65.7 4.5 42 129-170 255-296 (489)
218 PF00005 ABC_tran: ABC transpo 96.9 0.00069 1.5E-08 53.2 2.5 29 130-158 8-36 (137)
219 PTZ00202 tuzin; Provisional 96.9 0.0014 3E-08 65.8 5.1 80 133-228 286-366 (550)
220 COG1219 ClpX ATP-dependent pro 96.9 0.001 2.2E-08 64.3 4.0 33 135-167 99-131 (408)
221 PF13189 Cytidylate_kin2: Cyti 96.9 0.0021 4.5E-08 54.6 5.6 30 135-164 1-30 (179)
222 TIGR01420 pilT_fam pilus retra 96.8 0.0035 7.5E-08 58.6 7.4 26 133-158 122-147 (343)
223 TIGR00382 clpX endopeptidase C 96.8 0.0012 2.7E-08 64.1 4.5 34 133-166 116-149 (413)
224 TIGR00064 ftsY signal recognit 96.8 0.0013 2.7E-08 60.1 4.3 37 131-167 70-111 (272)
225 TIGR02525 plasmid_TraJ plasmid 96.8 0.0025 5.4E-08 61.1 6.5 27 132-158 148-174 (372)
226 cd01120 RecA-like_NTPases RecA 96.8 0.00086 1.9E-08 52.2 2.7 23 135-157 1-23 (165)
227 PRK05537 bifunctional sulfate 96.8 0.001 2.3E-08 66.7 3.9 40 128-167 387-432 (568)
228 cd01918 HprK_C HprK/P, the bif 96.8 0.0011 2.3E-08 56.5 3.4 39 133-172 14-52 (149)
229 PHA00729 NTP-binding motif con 96.8 0.00088 1.9E-08 60.6 3.0 25 134-158 18-42 (226)
230 COG1072 CoaA Panthothenate kin 96.8 0.0029 6.3E-08 59.3 6.4 69 130-211 79-154 (283)
231 PRK04296 thymidine kinase; Pro 96.8 0.008 1.7E-07 51.5 8.6 25 133-157 2-26 (190)
232 PLN00020 ribulose bisphosphate 96.8 0.0014 3E-08 64.1 4.3 43 129-171 144-186 (413)
233 PRK09435 membrane ATPase/prote 96.8 0.0047 1E-07 58.5 7.8 38 131-168 54-96 (332)
234 PRK06851 hypothetical protein; 96.8 0.0033 7.1E-08 60.5 6.7 27 131-157 28-54 (367)
235 PF08477 Miro: Miro-like prote 96.8 0.0013 2.9E-08 49.9 3.3 24 135-158 1-24 (119)
236 cd04163 Era Era subfamily. Er 96.8 0.0013 2.9E-08 50.7 3.3 24 133-156 3-26 (168)
237 KOG0734 AAA+-type ATPase conta 96.8 0.0027 5.8E-08 64.9 6.2 99 131-233 335-448 (752)
238 cd03255 ABC_MJ0796_Lo1CDE_FtsE 96.7 0.0013 2.9E-08 56.0 3.5 29 130-158 27-55 (218)
239 TIGR01618 phage_P_loop phage n 96.7 0.0098 2.1E-07 53.4 9.1 32 133-166 12-43 (220)
240 PF00437 T2SE: Type II/IV secr 96.7 0.0013 2.7E-08 58.3 3.4 29 131-159 125-153 (270)
241 PRK12724 flagellar biosynthesi 96.7 0.0013 2.7E-08 64.7 3.6 37 131-167 221-263 (432)
242 KOG0744 AAA+-type ATPase [Post 96.7 0.0011 2.4E-08 64.1 3.2 27 132-158 176-202 (423)
243 cd03225 ABC_cobalt_CbiO_domain 96.7 0.0014 3.1E-08 55.5 3.5 29 130-158 24-52 (211)
244 TIGR01241 FtsH_fam ATP-depende 96.7 0.0018 3.9E-08 63.0 4.6 36 131-166 86-121 (495)
245 TIGR00960 3a0501s02 Type II (G 96.7 0.0014 3.1E-08 55.9 3.4 29 130-158 26-54 (216)
246 PRK11889 flhF flagellar biosyn 96.7 0.0017 3.6E-08 64.0 4.3 37 131-167 239-280 (436)
247 COG0466 Lon ATP-dependent Lon 96.7 0.0021 4.7E-08 66.7 5.1 54 108-161 324-378 (782)
248 cd03292 ABC_FtsE_transporter F 96.7 0.0015 3.3E-08 55.4 3.4 29 130-158 24-52 (214)
249 TIGR01166 cbiO cobalt transpor 96.7 0.0016 3.4E-08 54.6 3.4 29 130-158 15-43 (190)
250 TIGR02673 FtsE cell division A 96.7 0.0016 3.4E-08 55.4 3.4 29 130-158 25-53 (214)
251 cd03269 ABC_putative_ATPase Th 96.7 0.0016 3.5E-08 55.3 3.5 29 130-158 23-51 (210)
252 PF13245 AAA_19: Part of AAA d 96.7 0.0019 4E-08 48.7 3.4 26 132-157 9-34 (76)
253 PTZ00454 26S protease regulato 96.7 0.0023 4.9E-08 61.6 4.8 36 130-165 176-211 (398)
254 TIGR01526 nadR_NMN_Atrans nico 96.7 0.002 4.3E-08 60.1 4.3 31 133-163 162-192 (325)
255 TIGR01650 PD_CobS cobaltochela 96.7 0.0018 3.8E-08 61.6 4.0 31 132-162 63-93 (327)
256 cd00820 PEPCK_HprK Phosphoenol 96.7 0.002 4.3E-08 52.2 3.8 24 131-154 13-36 (107)
257 PRK14722 flhF flagellar biosyn 96.7 0.0017 3.7E-08 62.5 3.9 38 130-167 134-178 (374)
258 cd03256 ABC_PhnC_transporter A 96.7 0.0017 3.6E-08 56.1 3.5 28 130-157 24-51 (241)
259 cd03259 ABC_Carb_Solutes_like 96.7 0.0017 3.7E-08 55.3 3.5 29 130-158 23-51 (213)
260 TIGR02315 ABC_phnC phosphonate 96.6 0.0017 3.6E-08 56.2 3.5 28 130-157 25-52 (243)
261 PHA02624 large T antigen; Prov 96.6 0.0023 5.1E-08 65.6 5.0 40 125-164 423-462 (647)
262 PRK13894 conjugal transfer ATP 96.6 0.0062 1.3E-07 57.1 7.4 26 132-157 147-172 (319)
263 PHA02544 44 clamp loader, smal 96.6 0.0023 5E-08 57.5 4.4 32 131-162 41-72 (316)
264 cd03235 ABC_Metallic_Cations A 96.6 0.0016 3.4E-08 55.5 3.2 28 130-157 22-49 (213)
265 cd03224 ABC_TM1139_LivF_branch 96.6 0.0016 3.6E-08 55.4 3.3 29 130-158 23-51 (222)
266 cd03261 ABC_Org_Solvent_Resist 96.6 0.0017 3.7E-08 56.2 3.5 29 130-158 23-51 (235)
267 cd03258 ABC_MetN_methionine_tr 96.6 0.0017 3.6E-08 56.0 3.3 30 129-158 27-56 (233)
268 PTZ00361 26 proteosome regulat 96.6 0.0024 5.2E-08 62.5 4.8 36 130-165 214-249 (438)
269 PRK13851 type IV secretion sys 96.6 0.0015 3.2E-08 62.0 3.2 27 132-158 161-187 (344)
270 cd01895 EngA2 EngA2 subfamily. 96.6 0.016 3.4E-07 45.3 8.6 25 133-157 2-26 (174)
271 COG1136 SalX ABC-type antimicr 96.6 0.0017 3.6E-08 58.9 3.3 27 129-155 27-53 (226)
272 PF03029 ATP_bind_1: Conserved 96.6 0.0014 3.1E-08 58.7 2.9 30 138-167 1-35 (238)
273 PF00910 RNA_helicase: RNA hel 96.6 0.0014 3.1E-08 51.1 2.6 23 136-158 1-23 (107)
274 cd03226 ABC_cobalt_CbiO_domain 96.6 0.0018 3.9E-08 54.9 3.4 29 130-158 23-51 (205)
275 TIGR02524 dot_icm_DotB Dot/Icm 96.6 0.0018 3.9E-08 61.6 3.7 27 131-157 132-158 (358)
276 cd03260 ABC_PstB_phosphate_tra 96.6 0.0019 4.1E-08 55.5 3.5 28 130-157 23-50 (227)
277 cd03262 ABC_HisP_GlnQ_permease 96.6 0.0019 4.1E-08 54.7 3.5 29 130-158 23-51 (213)
278 cd04155 Arl3 Arl3 subfamily. 96.6 0.0022 4.7E-08 51.5 3.6 27 130-156 11-37 (173)
279 COG1220 HslU ATP-dependent pro 96.6 0.002 4.3E-08 62.8 4.0 37 128-164 45-81 (444)
280 TIGR03345 VI_ClpV1 type VI sec 96.6 0.0064 1.4E-07 63.8 8.0 76 133-227 208-284 (852)
281 PRK05506 bifunctional sulfate 96.6 0.0016 3.5E-08 65.4 3.4 40 128-167 455-499 (632)
282 PF10662 PduV-EutP: Ethanolami 96.6 0.0017 3.7E-08 55.1 3.1 24 133-156 1-24 (143)
283 cd01128 rho_factor Transcripti 96.6 0.0088 1.9E-07 54.3 7.9 30 130-159 13-42 (249)
284 PRK13342 recombination factor 96.6 0.0026 5.6E-08 60.6 4.6 32 133-164 36-67 (413)
285 cd03301 ABC_MalK_N The N-termi 96.6 0.002 4.3E-08 54.7 3.5 29 130-158 23-51 (213)
286 cd03293 ABC_NrtD_SsuB_transpor 96.6 0.0018 4E-08 55.4 3.3 28 130-157 27-54 (220)
287 TIGR02211 LolD_lipo_ex lipopro 96.6 0.002 4.3E-08 55.0 3.5 29 130-158 28-56 (221)
288 PRK07952 DNA replication prote 96.6 0.0042 9E-08 56.3 5.7 67 134-200 100-175 (244)
289 PRK12402 replication factor C 96.6 0.0022 4.8E-08 57.4 3.9 25 134-158 37-61 (337)
290 PRK08116 hypothetical protein; 96.6 0.0071 1.5E-07 55.0 7.1 26 132-157 113-138 (268)
291 PF00931 NB-ARC: NB-ARC domain 96.6 0.0026 5.6E-08 55.6 4.1 27 130-156 16-42 (287)
292 cd03263 ABC_subfamily_A The AB 96.6 0.0021 4.5E-08 54.8 3.5 29 130-158 25-53 (220)
293 COG3709 Uncharacterized compon 96.6 0.0029 6.3E-08 56.2 4.3 93 131-235 3-106 (192)
294 TIGR00362 DnaA chromosomal rep 96.6 0.0046 1E-07 58.3 6.0 25 133-157 136-160 (405)
295 PRK06921 hypothetical protein; 96.5 0.0049 1.1E-07 56.0 5.9 26 132-157 116-141 (266)
296 COG1126 GlnQ ABC-type polar am 96.5 0.0019 4.2E-08 59.2 3.3 26 129-154 24-49 (240)
297 cd03229 ABC_Class3 This class 96.5 0.0023 4.9E-08 53.5 3.5 29 130-158 23-51 (178)
298 PF13555 AAA_29: P-loop contai 96.5 0.0028 6E-08 47.0 3.5 25 133-157 23-47 (62)
299 cd03265 ABC_DrrA DrrA is the A 96.5 0.0023 4.9E-08 54.9 3.5 29 130-158 23-51 (220)
300 cd03219 ABC_Mj1267_LivG_branch 96.5 0.002 4.4E-08 55.5 3.2 28 130-157 23-50 (236)
301 COG0464 SpoVK ATPases of the A 96.5 0.003 6.5E-08 61.0 4.7 39 129-167 272-310 (494)
302 cd01983 Fer4_NifH The Fer4_Nif 96.5 0.0034 7.3E-08 44.8 3.8 34 135-168 1-37 (99)
303 cd03296 ABC_CysA_sulfate_impor 96.5 0.0022 4.8E-08 55.7 3.5 29 130-158 25-53 (239)
304 PRK12726 flagellar biosynthesi 96.5 0.0026 5.7E-08 62.1 4.3 38 131-168 204-246 (407)
305 TIGR02782 TrbB_P P-type conjug 96.5 0.0022 4.7E-08 59.3 3.5 26 132-157 131-156 (299)
306 TIGR03608 L_ocin_972_ABC putat 96.5 0.0023 5E-08 53.9 3.4 29 130-158 21-49 (206)
307 PRK10584 putative ABC transpor 96.5 0.0023 5.1E-08 55.0 3.5 29 130-158 33-61 (228)
308 CHL00181 cbbX CbbX; Provisiona 96.5 0.0025 5.5E-08 58.5 3.9 25 133-157 59-83 (287)
309 PRK11629 lolD lipoprotein tran 96.5 0.0023 5.1E-08 55.4 3.5 29 130-158 32-60 (233)
310 cd03264 ABC_drug_resistance_li 96.5 0.0021 4.6E-08 54.6 3.2 26 131-157 24-49 (211)
311 TIGR03864 PQQ_ABC_ATP ABC tran 96.5 0.0024 5.2E-08 55.5 3.5 28 130-157 24-51 (236)
312 cd03247 ABCC_cytochrome_bd The 96.5 0.0025 5.4E-08 53.2 3.5 30 129-158 24-53 (178)
313 cd03257 ABC_NikE_OppD_transpor 96.5 0.0024 5.1E-08 54.6 3.4 30 129-158 27-56 (228)
314 PF03308 ArgK: ArgK protein; 96.5 0.012 2.7E-07 54.7 8.3 96 131-228 27-127 (266)
315 cd03218 ABC_YhbG The ABC trans 96.5 0.0024 5.1E-08 55.0 3.4 28 130-157 23-50 (232)
316 PRK14974 cell division protein 96.5 0.0026 5.6E-08 60.3 3.9 37 131-167 138-179 (336)
317 cd03268 ABC_BcrA_bacitracin_re 96.5 0.0025 5.5E-08 54.0 3.5 29 130-158 23-51 (208)
318 COG4619 ABC-type uncharacteriz 96.5 0.0031 6.7E-08 56.7 4.1 53 131-189 27-80 (223)
319 PRK13541 cytochrome c biogenes 96.5 0.0026 5.6E-08 53.8 3.5 29 130-158 23-51 (195)
320 TIGR01978 sufC FeS assembly AT 96.5 0.0024 5.3E-08 55.1 3.4 27 130-156 23-49 (243)
321 cd03246 ABCC_Protease_Secretio 96.5 0.0027 5.9E-08 52.8 3.5 29 130-158 25-53 (173)
322 PF03205 MobB: Molybdopterin g 96.5 0.0027 5.7E-08 52.6 3.4 24 134-157 1-24 (140)
323 PRK10908 cell division protein 96.5 0.0026 5.6E-08 54.6 3.5 29 130-158 25-53 (222)
324 COG1224 TIP49 DNA helicase TIP 96.5 0.0037 8.1E-08 61.2 4.9 31 128-158 60-90 (450)
325 COG4639 Predicted kinase [Gene 96.5 0.0033 7.1E-08 55.1 4.1 72 133-229 2-76 (168)
326 KOG3877 NADH:ubiquinone oxidor 96.5 0.011 2.3E-07 56.6 7.8 101 131-240 69-192 (393)
327 PF03193 DUF258: Protein of un 96.5 0.0025 5.5E-08 54.9 3.3 27 132-158 34-60 (161)
328 TIGR02237 recomb_radB DNA repa 96.5 0.0032 6.9E-08 53.3 3.9 28 130-157 9-36 (209)
329 TIGR02868 CydC thiol reductant 96.5 0.0022 4.8E-08 61.9 3.3 31 128-158 356-386 (529)
330 COG1703 ArgK Putative periplas 96.5 0.014 2.9E-07 55.8 8.4 98 129-228 47-149 (323)
331 PHA02244 ATPase-like protein 96.5 0.0028 6.1E-08 61.5 4.0 35 131-165 117-151 (383)
332 cd03245 ABCC_bacteriocin_expor 96.5 0.0027 5.9E-08 54.2 3.5 28 130-157 27-54 (220)
333 PRK14247 phosphate ABC transpo 96.5 0.0026 5.7E-08 55.5 3.5 28 130-157 26-53 (250)
334 cd03230 ABC_DR_subfamily_A Thi 96.4 0.0028 6.1E-08 52.7 3.4 29 130-158 23-51 (173)
335 PRK14721 flhF flagellar biosyn 96.4 0.0034 7.3E-08 61.3 4.5 38 131-168 189-233 (420)
336 cd01394 radB RadB. The archaea 96.4 0.0032 7E-08 53.7 3.9 28 130-157 16-43 (218)
337 cd01853 Toc34_like Toc34-like 96.4 0.012 2.5E-07 53.3 7.6 84 129-221 27-112 (249)
338 PRK11124 artP arginine transpo 96.4 0.0028 6E-08 55.1 3.5 28 130-157 25-52 (242)
339 PRK14242 phosphate transporter 96.4 0.0027 5.8E-08 55.6 3.4 28 130-157 29-56 (253)
340 PRK11264 putative amino-acid A 96.4 0.0027 5.8E-08 55.4 3.4 29 130-158 26-54 (250)
341 PRK00771 signal recognition pa 96.4 0.0029 6.2E-08 62.0 3.9 37 131-167 93-134 (437)
342 cd03254 ABCC_Glucan_exporter_l 96.4 0.0029 6.2E-08 54.3 3.5 29 130-158 26-54 (229)
343 cd03266 ABC_NatA_sodium_export 96.4 0.0029 6.3E-08 53.9 3.5 29 130-158 28-56 (218)
344 PRK10247 putative ABC transpor 96.4 0.0028 6E-08 54.9 3.4 29 129-157 29-57 (225)
345 PRK15177 Vi polysaccharide exp 96.4 0.0026 5.5E-08 55.1 3.1 29 129-157 9-37 (213)
346 PRK14088 dnaA chromosomal repl 96.4 0.011 2.5E-07 57.2 7.9 25 133-157 130-154 (440)
347 TIGR03410 urea_trans_UrtE urea 96.4 0.0029 6.2E-08 54.5 3.4 29 130-158 23-51 (230)
348 cd03238 ABC_UvrA The excision 96.4 0.003 6.5E-08 54.2 3.5 26 130-155 18-43 (176)
349 TIGR01189 ccmA heme ABC export 96.4 0.0029 6.3E-08 53.5 3.4 29 130-158 23-51 (198)
350 PF13476 AAA_23: AAA domain; P 96.4 0.0033 7.1E-08 51.2 3.6 28 132-159 18-45 (202)
351 PF13086 AAA_11: AAA domain; P 96.4 0.0029 6.3E-08 52.3 3.2 23 135-157 19-41 (236)
352 cd03252 ABCC_Hemolysin The ABC 96.4 0.003 6.6E-08 54.6 3.4 28 130-157 25-52 (237)
353 TIGR02639 ClpA ATP-dependent C 96.4 0.0038 8.1E-08 63.9 4.6 32 135-166 486-517 (731)
354 cd03295 ABC_OpuCA_Osmoprotecti 96.4 0.0031 6.8E-08 54.9 3.5 30 129-158 23-52 (242)
355 cd03278 ABC_SMC_barmotin Barmo 96.4 0.0027 5.8E-08 54.8 3.0 26 131-157 21-46 (197)
356 cd03232 ABC_PDR_domain2 The pl 96.4 0.0031 6.6E-08 53.5 3.3 27 130-156 30-56 (192)
357 PRK10895 lipopolysaccharide AB 96.4 0.0032 6.9E-08 54.7 3.5 29 130-158 26-54 (241)
358 COG2804 PulE Type II secretory 96.4 0.0043 9.4E-08 62.0 4.8 27 133-159 258-284 (500)
359 cd03222 ABC_RNaseL_inhibitor T 96.4 0.0031 6.6E-08 54.2 3.3 27 131-157 23-49 (177)
360 PRK14250 phosphate ABC transpo 96.4 0.0032 6.8E-08 55.1 3.5 29 130-158 26-54 (241)
361 PRK06835 DNA replication prote 96.4 0.011 2.3E-07 55.8 7.2 93 133-227 183-284 (329)
362 cd03223 ABCD_peroxisomal_ALDP 96.4 0.0034 7.3E-08 52.3 3.5 30 129-158 23-52 (166)
363 PRK11248 tauB taurine transpor 96.4 0.0032 6.9E-08 56.0 3.5 28 130-157 24-51 (255)
364 PRK00149 dnaA chromosomal repl 96.4 0.0066 1.4E-07 58.4 5.9 25 133-157 148-172 (450)
365 TIGR02880 cbbX_cfxQ probable R 96.4 0.0031 6.7E-08 57.6 3.5 25 133-157 58-82 (284)
366 PRK13538 cytochrome c biogenes 96.4 0.0033 7.2E-08 53.5 3.5 30 129-158 23-52 (204)
367 PRK09493 glnQ glutamine ABC tr 96.4 0.0031 6.7E-08 54.7 3.3 29 130-158 24-52 (240)
368 TIGR02788 VirB11 P-type DNA tr 96.4 0.0029 6.3E-08 58.2 3.3 28 131-158 142-169 (308)
369 PRK13768 GTPase; Provisional 96.4 0.0043 9.3E-08 55.7 4.3 34 133-166 2-40 (253)
370 TIGR01184 ntrCD nitrate transp 96.4 0.0033 7.1E-08 54.7 3.5 28 131-158 9-36 (230)
371 COG0125 Tmk Thymidylate kinase 96.3 0.0055 1.2E-07 54.5 4.9 105 132-246 2-114 (208)
372 cd03249 ABC_MTABC3_MDL1_MDL2 M 96.3 0.0033 7.2E-08 54.4 3.4 28 130-157 26-53 (238)
373 COG1120 FepC ABC-type cobalami 96.3 0.0031 6.8E-08 58.1 3.5 30 129-158 24-53 (258)
374 cd03298 ABC_ThiQ_thiamine_tran 96.3 0.0034 7.4E-08 53.3 3.5 29 130-158 21-49 (211)
375 PRK13900 type IV secretion sys 96.3 0.0029 6.4E-08 59.5 3.3 28 132-159 159-186 (332)
376 PRK05416 glmZ(sRNA)-inactivati 96.3 0.0046 9.9E-08 57.3 4.5 31 131-162 4-34 (288)
377 TIGR00763 lon ATP-dependent pr 96.3 0.0041 8.9E-08 64.1 4.6 34 129-162 343-376 (775)
378 cd01124 KaiC KaiC is a circadi 96.3 0.003 6.4E-08 51.8 2.9 22 135-156 1-22 (187)
379 TIGR00972 3a0107s01c2 phosphat 96.3 0.0035 7.5E-08 54.8 3.5 28 130-157 24-51 (247)
380 PRK13540 cytochrome c biogenes 96.3 0.0036 7.8E-08 53.1 3.5 29 130-158 24-52 (200)
381 TIGR02770 nickel_nikD nickel i 96.3 0.0034 7.3E-08 54.4 3.4 29 130-158 9-37 (230)
382 PRK13833 conjugal transfer pro 96.3 0.0033 7.1E-08 59.4 3.5 25 133-157 144-168 (323)
383 PRK10744 pstB phosphate transp 96.3 0.0033 7.1E-08 55.6 3.3 29 129-157 35-63 (260)
384 cd03297 ABC_ModC_molybdenum_tr 96.3 0.0033 7.1E-08 53.7 3.2 27 131-158 22-48 (214)
385 PLN02924 thymidylate kinase 96.3 0.0038 8.2E-08 55.4 3.7 31 129-159 12-42 (220)
386 TIGR02323 CP_lyasePhnK phospho 96.3 0.0034 7.4E-08 54.9 3.3 30 129-158 25-54 (253)
387 cd03237 ABC_RNaseL_inhibitor_d 96.3 0.0037 8.1E-08 55.7 3.6 27 131-157 23-49 (246)
388 cd03251 ABCC_MsbA MsbA is an e 96.3 0.0036 7.9E-08 53.9 3.5 29 130-158 25-53 (234)
389 PRK13539 cytochrome c biogenes 96.3 0.0037 8E-08 53.4 3.5 29 130-158 25-53 (207)
390 PRK14262 phosphate ABC transpo 96.3 0.0036 7.7E-08 54.7 3.4 28 130-157 26-53 (250)
391 cd03250 ABCC_MRP_domain1 Domai 96.3 0.0035 7.7E-08 53.1 3.3 30 129-158 27-56 (204)
392 PRK10436 hypothetical protein; 96.3 0.017 3.6E-07 57.0 8.4 27 132-158 217-243 (462)
393 cd03228 ABCC_MRP_Like The MRP 96.3 0.0039 8.6E-08 51.8 3.5 30 129-158 24-53 (171)
394 cd01894 EngA1 EngA1 subfamily. 96.3 0.017 3.7E-07 44.8 6.9 21 137-157 1-21 (157)
395 cd03215 ABC_Carb_Monos_II This 96.3 0.0037 8E-08 52.4 3.3 29 130-158 23-51 (182)
396 cd03214 ABC_Iron-Siderophores_ 96.3 0.0039 8.5E-08 52.2 3.5 29 130-158 22-50 (180)
397 TIGR01243 CDC48 AAA family ATP 96.3 0.0043 9.3E-08 63.3 4.4 35 131-165 210-244 (733)
398 TIGR00231 small_GTP small GTP- 96.3 0.0037 8.1E-08 47.1 3.0 24 134-157 2-25 (161)
399 PRK11300 livG leucine/isoleuci 96.3 0.0037 8E-08 54.6 3.4 28 131-158 29-56 (255)
400 PRK08727 hypothetical protein; 96.3 0.0094 2E-07 52.6 6.0 25 133-157 41-65 (233)
401 cd03234 ABCG_White The White s 96.3 0.0036 7.9E-08 54.0 3.3 30 129-158 29-58 (226)
402 TIGR03771 anch_rpt_ABC anchore 96.3 0.0039 8.5E-08 54.0 3.5 28 131-158 4-31 (223)
403 TIGR02324 CP_lyasePhnL phospho 96.3 0.0037 8E-08 53.6 3.3 30 129-158 30-59 (224)
404 cd03244 ABCC_MRP_domain2 Domai 96.3 0.004 8.6E-08 53.2 3.5 28 130-157 27-54 (221)
405 PRK10865 protein disaggregatio 96.3 0.011 2.4E-07 62.0 7.4 26 133-158 199-224 (857)
406 cd03114 ArgK-like The function 96.3 0.015 3.2E-07 48.4 6.8 31 136-166 2-37 (148)
407 TIGR00176 mobB molybdopterin-g 96.3 0.0032 6.9E-08 52.9 2.8 23 135-157 1-23 (155)
408 cd03253 ABCC_ATM1_transporter 96.3 0.004 8.6E-08 53.7 3.5 29 130-158 24-52 (236)
409 PRK14274 phosphate ABC transpo 96.3 0.0039 8.5E-08 55.0 3.5 28 130-157 35-62 (259)
410 PRK14961 DNA polymerase III su 96.3 0.0043 9.3E-08 58.2 4.0 28 132-159 37-64 (363)
411 PRK14261 phosphate ABC transpo 96.3 0.0039 8.5E-08 54.7 3.5 27 130-156 29-55 (253)
412 PRK12727 flagellar biosynthesi 96.3 0.0046 1E-07 62.6 4.4 38 131-168 348-392 (559)
413 PLN02842 nucleotide kinase 96.3 0.003 6.4E-08 63.2 3.0 31 137-167 1-31 (505)
414 PRK11701 phnK phosphonate C-P 96.3 0.0038 8.2E-08 55.0 3.4 29 130-158 29-57 (258)
415 cd03369 ABCC_NFT1 Domain 2 of 96.3 0.0039 8.4E-08 53.0 3.3 29 129-157 30-58 (207)
416 TIGR01277 thiQ thiamine ABC tr 96.3 0.0039 8.4E-08 53.3 3.3 28 130-157 21-48 (213)
417 PRK14267 phosphate ABC transpo 96.3 0.004 8.6E-08 54.5 3.5 28 130-157 27-54 (253)
418 KOG2004 Mitochondrial ATP-depe 96.3 0.0031 6.7E-08 65.9 3.2 33 128-160 433-465 (906)
419 CHL00176 ftsH cell division pr 96.2 0.0051 1.1E-07 62.8 4.7 36 131-166 214-249 (638)
420 PRK11034 clpA ATP-dependent Cl 96.2 0.0049 1.1E-07 64.1 4.6 32 135-166 490-521 (758)
421 TIGR00101 ureG urease accessor 96.2 0.0046 1E-07 53.7 3.8 26 133-158 1-26 (199)
422 cd03267 ABC_NatA_like Similar 96.2 0.0038 8.3E-08 54.5 3.3 29 129-157 43-71 (236)
423 TIGR02639 ClpA ATP-dependent C 96.2 0.01 2.2E-07 60.8 6.8 25 133-157 203-227 (731)
424 cd00880 Era_like Era (E. coli 96.2 0.02 4.4E-07 43.0 6.8 20 138-157 1-20 (163)
425 cd03248 ABCC_TAP TAP, the Tran 96.2 0.0043 9.4E-08 53.3 3.5 30 129-158 36-65 (226)
426 PRK14245 phosphate ABC transpo 96.2 0.0041 8.9E-08 54.4 3.4 26 130-155 26-51 (250)
427 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 96.2 0.0039 8.4E-08 54.2 3.2 29 129-157 44-72 (224)
428 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.2 0.0042 9.2E-08 50.8 3.3 29 130-158 23-51 (144)
429 PRK14239 phosphate transporter 96.2 0.0042 9.1E-08 54.2 3.4 26 131-156 29-54 (252)
430 PRK13543 cytochrome c biogenes 96.2 0.0043 9.4E-08 53.3 3.5 30 129-158 33-62 (214)
431 PRK06526 transposase; Provisio 96.2 0.004 8.6E-08 56.4 3.3 26 132-157 97-122 (254)
432 TIGR02533 type_II_gspE general 96.2 0.02 4.3E-07 56.6 8.4 25 134-158 243-267 (486)
433 PRK13648 cbiO cobalt transport 96.2 0.0043 9.3E-08 55.2 3.5 29 130-158 32-60 (269)
434 cd03116 MobB Molybdenum is an 96.2 0.0047 1E-07 52.4 3.5 25 134-158 2-26 (159)
435 TIGR03005 ectoine_ehuA ectoine 96.2 0.0041 8.9E-08 54.5 3.3 29 129-157 22-50 (252)
436 PRK14244 phosphate ABC transpo 96.2 0.0045 9.7E-08 54.2 3.5 27 131-157 29-55 (251)
437 PRK14255 phosphate ABC transpo 96.2 0.0044 9.6E-08 54.2 3.4 27 130-156 28-54 (252)
438 cd03233 ABC_PDR_domain1 The pl 96.2 0.0041 8.8E-08 53.2 3.1 29 130-158 30-58 (202)
439 PRK09183 transposase/IS protei 96.2 0.0044 9.6E-08 56.0 3.5 26 131-156 100-125 (259)
440 PRK14270 phosphate ABC transpo 96.2 0.0046 9.9E-08 54.2 3.5 28 130-157 27-54 (251)
441 PRK14248 phosphate ABC transpo 96.2 0.0045 9.7E-08 55.0 3.5 27 130-156 44-70 (268)
442 PRK14241 phosphate transporter 96.2 0.0042 9.1E-08 54.7 3.3 28 130-157 27-54 (258)
443 PRK05703 flhF flagellar biosyn 96.2 0.0043 9.3E-08 60.2 3.6 36 132-167 220-262 (424)
444 COG1124 DppF ABC-type dipeptid 96.2 0.0042 9.2E-08 57.4 3.4 27 130-156 30-56 (252)
445 PRK14273 phosphate ABC transpo 96.2 0.0046 9.9E-08 54.3 3.5 29 130-158 30-58 (254)
446 cd01123 Rad51_DMC1_radA Rad51_ 96.2 0.0049 1.1E-07 52.9 3.6 27 130-156 16-42 (235)
447 cd03272 ABC_SMC3_euk Eukaryoti 96.2 0.0042 9.1E-08 53.8 3.2 22 133-154 23-44 (243)
448 TIGR02538 type_IV_pilB type IV 96.2 0.019 4.2E-07 57.4 8.2 27 132-158 315-341 (564)
449 cd00267 ABC_ATPase ABC (ATP-bi 96.2 0.0046 1E-07 50.3 3.2 29 130-158 22-50 (157)
450 cd03216 ABC_Carb_Monos_I This 96.2 0.0048 1E-07 51.2 3.4 29 130-158 23-51 (163)
451 PF03266 NTPase_1: NTPase; In 96.2 0.0042 9.1E-08 53.0 3.1 23 135-157 1-23 (168)
452 PRK10771 thiQ thiamine transpo 96.2 0.0046 1E-07 53.5 3.4 28 131-158 23-50 (232)
453 PF01695 IstB_IS21: IstB-like 96.2 0.0053 1.2E-07 52.5 3.7 104 131-241 45-157 (178)
454 COG0714 MoxR-like ATPases [Gen 96.2 0.0057 1.2E-07 56.3 4.1 31 132-162 42-72 (329)
455 PRK14256 phosphate ABC transpo 96.2 0.0048 1E-07 54.1 3.5 28 130-157 27-54 (252)
456 PRK13638 cbiO cobalt transport 96.2 0.0044 9.4E-08 55.2 3.3 29 130-158 24-52 (271)
457 PRK10575 iron-hydroxamate tran 96.2 0.0043 9.3E-08 55.1 3.2 28 130-157 34-61 (265)
458 PRK14251 phosphate ABC transpo 96.2 0.0049 1.1E-07 53.9 3.5 28 130-157 27-54 (251)
459 cd03294 ABC_Pro_Gly_Bertaine T 96.1 0.0048 1E-07 55.2 3.5 30 129-158 46-75 (269)
460 cd00046 DEXDc DEAD-like helica 96.1 0.0044 9.6E-08 45.9 2.8 24 135-158 2-25 (144)
461 COG3911 Predicted ATPase [Gene 96.1 0.0053 1.1E-07 54.1 3.6 29 129-157 5-33 (183)
462 PRK11247 ssuB aliphatic sulfon 96.1 0.0048 1E-07 55.3 3.4 28 130-157 35-62 (257)
463 PRK10619 histidine/lysine/argi 96.1 0.0049 1.1E-07 54.3 3.5 30 129-158 27-56 (257)
464 COG1100 GTPase SAR1 and relate 96.1 0.015 3.3E-07 48.7 6.3 25 134-158 6-30 (219)
465 PRK14253 phosphate ABC transpo 96.1 0.0051 1.1E-07 53.7 3.5 28 130-157 26-53 (249)
466 cd04159 Arl10_like Arl10-like 96.1 0.0042 9.2E-08 47.7 2.7 21 136-156 2-22 (159)
467 PLN03025 replication factor C 96.1 0.0052 1.1E-07 56.3 3.7 25 134-158 35-59 (319)
468 PRK09544 znuC high-affinity zi 96.1 0.005 1.1E-07 54.8 3.5 28 130-157 27-54 (251)
469 COG1117 PstB ABC-type phosphat 96.1 0.0047 1E-07 57.0 3.3 32 126-157 26-57 (253)
470 PRK13632 cbiO cobalt transport 96.1 0.005 1.1E-07 55.0 3.4 30 129-158 31-60 (271)
471 PF13479 AAA_24: AAA domain 96.1 0.024 5.2E-07 49.3 7.6 31 132-165 2-32 (213)
472 TIGR00073 hypB hydrogenase acc 96.1 0.0058 1.3E-07 52.5 3.7 28 131-158 20-47 (207)
473 PRK14269 phosphate ABC transpo 96.1 0.0052 1.1E-07 53.8 3.5 27 131-157 26-52 (246)
474 cd03283 ABC_MutS-like MutS-lik 96.1 0.005 1.1E-07 53.4 3.3 23 133-155 25-47 (199)
475 PRK14240 phosphate transporter 96.1 0.0052 1.1E-07 53.7 3.5 27 130-156 26-52 (250)
476 PRK12422 chromosomal replicati 96.1 0.015 3.3E-07 56.7 7.0 25 133-157 141-165 (445)
477 TIGR01243 CDC48 AAA family ATP 96.1 0.0067 1.5E-07 61.9 4.8 35 131-165 485-519 (733)
478 cd03290 ABCC_SUR1_N The SUR do 96.1 0.0054 1.2E-07 52.5 3.5 28 130-157 24-51 (218)
479 PRK15056 manganese/iron transp 96.1 0.005 1.1E-07 55.0 3.4 28 130-157 30-57 (272)
480 TIGR03575 selen_PSTK_euk L-ser 96.1 0.0043 9.3E-08 59.0 3.1 33 135-167 1-39 (340)
481 PRK13764 ATPase; Provisional 96.1 0.0046 9.9E-08 63.0 3.5 28 131-158 255-282 (602)
482 PRK06995 flhF flagellar biosyn 96.1 0.0048 1E-07 61.3 3.6 37 131-167 254-297 (484)
483 PRK14259 phosphate ABC transpo 96.1 0.0051 1.1E-07 54.9 3.4 29 129-157 35-63 (269)
484 KOG3079 Uridylate kinase/adeny 96.1 0.0054 1.2E-07 54.8 3.5 37 131-167 6-42 (195)
485 PRK09984 phosphonate/organopho 96.1 0.0052 1.1E-07 54.3 3.4 29 130-158 27-55 (262)
486 PRK14237 phosphate transporter 96.1 0.005 1.1E-07 54.9 3.4 29 129-157 42-70 (267)
487 TIGR03411 urea_trans_UrtD urea 96.1 0.0051 1.1E-07 53.4 3.3 28 130-157 25-52 (242)
488 PRK13649 cbiO cobalt transport 96.1 0.005 1.1E-07 55.0 3.3 29 130-158 30-58 (280)
489 PRK09361 radB DNA repair and r 96.1 0.0064 1.4E-07 52.3 3.9 29 129-157 19-47 (225)
490 PRK11831 putative ABC transpor 96.1 0.0051 1.1E-07 54.8 3.4 28 130-157 30-57 (269)
491 cd03273 ABC_SMC2_euk Eukaryoti 96.1 0.0056 1.2E-07 54.0 3.6 28 131-158 23-50 (251)
492 cd04127 Rab27A Rab27a subfamil 96.1 0.022 4.9E-07 46.1 6.9 23 134-156 5-27 (180)
493 cd03231 ABC_CcmA_heme_exporter 96.1 0.0052 1.1E-07 52.3 3.3 30 129-158 22-51 (201)
494 cd04138 H_N_K_Ras_like H-Ras/N 96.1 0.0055 1.2E-07 47.8 3.1 22 135-156 3-24 (162)
495 CHL00131 ycf16 sulfate ABC tra 96.1 0.0049 1.1E-07 53.8 3.2 27 130-156 30-56 (252)
496 PRK14235 phosphate transporter 96.1 0.0055 1.2E-07 54.6 3.5 28 130-157 42-69 (267)
497 smart00173 RAS Ras subfamily o 96.1 0.0055 1.2E-07 48.7 3.2 22 135-156 2-23 (164)
498 PRK11614 livF leucine/isoleuci 96.1 0.0048 1E-07 53.5 3.0 28 130-157 28-55 (237)
499 PRK13548 hmuV hemin importer A 96.1 0.0052 1.1E-07 54.5 3.4 28 130-157 25-52 (258)
500 cd00877 Ran Ran (Ras-related n 96.1 0.022 4.7E-07 46.5 6.8 21 135-155 2-22 (166)
No 1
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=100.00 E-value=1.9e-36 Score=278.57 Aligned_cols=112 Identities=34% Similarity=0.568 Sum_probs=108.2
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHH
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEH 210 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~ 210 (251)
.++++|+|+||||||||.||.+||++ +++|||+||+||||+++|+|+||+++|+.++||||+|.++|.+.||+++|.+.
T Consensus 2 ~~~~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e~~sv~~f~~~ 80 (300)
T PRK14729 2 KENKIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPIKEYNLGIFYKE 80 (300)
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHh-CCcEEeccHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCCCceeHHHHHHH
Confidence 34579999999999999999999999 67999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCcEEEEcccHHHHHHHHcCCc
Q 045245 211 ALRAIDKIIENGHLHIIVGGSNTYIEALVEDSI 243 (251)
Q Consensus 211 A~k~I~eI~~~Gk~PILVGGTglYlkaLl~g~~ 243 (251)
|.+.|++++++|+.||||||||||++||++|+.
T Consensus 81 a~~~i~~i~~~gk~PilvGGTglYi~all~gl~ 113 (300)
T PRK14729 81 ALKIIKELRQQKKIPIFVGGSAFYFKHLKYGLP 113 (300)
T ss_pred HHHHHHHHHHCCCCEEEEeCchHHHHHHHcCCC
Confidence 999999999999999999999999999999974
No 2
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-35 Score=275.17 Aligned_cols=112 Identities=46% Similarity=0.765 Sum_probs=110.0
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHHH
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHA 211 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~A 211 (251)
++++++|+||||||||.||..||+++|++|||+||+|||++++|||+||+.+|+.++|||++|..+|.+.||+++|.++|
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQvYr~mdIGTAKps~~e~~~vpHhliDi~~p~e~ysa~~f~~~a 81 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQVYRGLDIGTAKPSLEELAGVPHHLIDIRDPTESYSAAEFQRDA 81 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhhcCCCcccCCCCCHHHHcCCCEEEecccCccccccHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCcEEEEcccHHHHHHHHcCCc
Q 045245 212 LRAIDKIIENGHLHIIVGGSNTYIEALVEDSI 243 (251)
Q Consensus 212 ~k~I~eI~~~Gk~PILVGGTglYlkaLl~g~~ 243 (251)
.+.|+++..+||.||||||||+|++||+.|++
T Consensus 82 ~~~i~~i~~rgk~pIlVGGTglY~~aL~~g~~ 113 (308)
T COG0324 82 LAAIDDILARGKLPILVGGTGLYLKALLEGLS 113 (308)
T ss_pred HHHHHHHHhCCCCcEEEccHHHHHHHHHcCCC
Confidence 99999999999999999999999999999976
No 3
>PLN02748 tRNA dimethylallyltransferase
Probab=100.00 E-value=1.4e-34 Score=279.73 Aligned_cols=115 Identities=49% Similarity=0.834 Sum_probs=111.3
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHH
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFC 208 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~ 208 (251)
..+++++|+|+||||||||+||..||++++++|||+|++|||++++|+|+||+++|+.++||||+|.++|.+.|++++|.
T Consensus 18 ~~~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e~ysv~~F~ 97 (468)
T PLN02748 18 QKGKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSVEFTAKDFR 97 (468)
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCCcCcHHHHH
Confidence 34667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccHHHHHHHHcCCc
Q 045245 209 EHALRAIDKIIENGHLHIIVGGSNTYIEALVEDSI 243 (251)
Q Consensus 209 e~A~k~I~eI~~~Gk~PILVGGTglYlkaLl~g~~ 243 (251)
+.|.+.|++++++|+.||||||||||++||++|+.
T Consensus 98 ~~A~~~I~~I~~rgk~PIlVGGTglYi~aLl~g~~ 132 (468)
T PLN02748 98 DHAVPLIEEILSRNGLPVIVGGTNYYIQALVSPFL 132 (468)
T ss_pred HHHHHHHHHHHhcCCCeEEEcChHHHHHHHHcCcc
Confidence 99999999999999999999999999999999874
No 4
>PLN02840 tRNA dimethylallyltransferase
Probab=100.00 E-value=1.5e-33 Score=269.89 Aligned_cols=115 Identities=36% Similarity=0.693 Sum_probs=111.1
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHH
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFC 208 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~ 208 (251)
...++++|+|+|||||||||||..||++++.++|++|++|+|++++|+|+||+++|+.++||||+|.++|.++|++++|.
T Consensus 17 ~~~~~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhlidil~p~e~ySv~~F~ 96 (421)
T PLN02840 17 KTKKEKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQVYRGLDVGSAKPSLSERKEVPHHLIDILHPSDDYSVGAFF 96 (421)
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccceecceeEEcCCCCHHHHcCCCeEeEeecCCCCceeHHHHH
Confidence 34556799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccHHHHHHHHcCCc
Q 045245 209 EHALRAIDKIIENGHLHIIVGGSNTYIEALVEDSI 243 (251)
Q Consensus 209 e~A~k~I~eI~~~Gk~PILVGGTglYlkaLl~g~~ 243 (251)
++|.+.|++++++|++||||||||||++||++|++
T Consensus 97 ~~A~~~I~~i~~rgkiPIvVGGTGlYl~aLl~G~~ 131 (421)
T PLN02840 97 DDARRATQDILNRGRVPIVAGGTGLYLRWYIYGKP 131 (421)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccHHHHHHhcCCC
Confidence 99999999999999999999999999999999975
No 5
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=100.00 E-value=1.9e-33 Score=257.27 Aligned_cols=109 Identities=42% Similarity=0.791 Sum_probs=107.0
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHHHHHH
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHALRA 214 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~A~k~ 214 (251)
+|+|+||||||||+||.+|+++++.++||+|++|||++++|+|+||+++|+.++||||+|..++.+.|++++|++.|.+.
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qvY~~l~IgTakp~~~e~~~v~hhlid~~~~~~~~~v~~f~~~a~~~ 80 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQIYKGMDIGTAKPSLQEREGIPHHLIDILDPSESYSAADFQTLALNA 80 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcEEEechhheeeeccccCCCCCHHHHcCccEEEEEEechhheEcHHHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCcEEEEcccHHHHHHHHcCCc
Q 045245 215 IDKIIENGHLHIIVGGSNTYIEALVEDSI 243 (251)
Q Consensus 215 I~eI~~~Gk~PILVGGTglYlkaLl~g~~ 243 (251)
|++++++|+.||||||||||++||++|+.
T Consensus 81 i~~~~~~g~~pi~vGGTg~Yi~all~g~~ 109 (287)
T TIGR00174 81 IADITARGKIPLLVGGTGLYLKALLEGLS 109 (287)
T ss_pred HHHHHhCCCCEEEEcCcHHHHHHHHcCCC
Confidence 99999999999999999999999999975
No 6
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=99.98 E-value=1.2e-32 Score=253.28 Aligned_cols=113 Identities=48% Similarity=0.805 Sum_probs=109.5
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHH
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEH 210 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~ 210 (251)
.++++|+|+||||||||+||..||++++.++||+|++|+|++++|+|+||+++|+++++|||+|.++|.+.|++++|.++
T Consensus 2 ~~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f~~~ 81 (307)
T PRK00091 2 MKPKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYSVADFQRD 81 (307)
T ss_pred CCceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhcccHHHHHHH
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCcEEEEcccHHHHHHHHcCCc
Q 045245 211 ALRAIDKIIENGHLHIIVGGSNTYIEALVEDSI 243 (251)
Q Consensus 211 A~k~I~eI~~~Gk~PILVGGTglYlkaLl~g~~ 243 (251)
|.+.+++++++|+.|||||||++|+++|+.|+.
T Consensus 82 a~~~i~~i~~~gk~pIlvGGt~~Y~~al~~g~~ 114 (307)
T PRK00091 82 ALAAIADILARGKLPILVGGTGLYIKALLEGLS 114 (307)
T ss_pred HHHHHHHHHhCCCCEEEECcHHHHHHHhccCCC
Confidence 999999999999999999999999999999863
No 7
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=1.5e-30 Score=243.17 Aligned_cols=110 Identities=59% Similarity=0.977 Sum_probs=108.7
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHHH
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHA 211 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~A 211 (251)
+.|+|+|+|+||||||.||..||.+|+++|||+|++|+|++++|+|+|++.+|+.|+||||++.+++..++++++|.+.|
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F~~~a 85 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEFEDDA 85 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCCceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHhhccHHHHHHHH
Confidence 67999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCcEEEEcccHHHHHHHHcC
Q 045245 212 LRAIDKIIENGHLHIIVGGSNTYIEALVED 241 (251)
Q Consensus 212 ~k~I~eI~~~Gk~PILVGGTglYlkaLl~g 241 (251)
..+|++|+++|+.||++|||++|++||+.+
T Consensus 86 ~~aie~I~~rgk~PIv~GGs~~yi~al~~~ 115 (348)
T KOG1384|consen 86 SRAIEEIHSRGKLPIVVGGSNSYLQALLSK 115 (348)
T ss_pred HHHHHHHHhCCCCCEEeCCchhhHHHHhhc
Confidence 999999999999999999999999999998
No 8
>PLN02165 adenylate isopentenyltransferase
Probab=99.96 E-value=1.3e-29 Score=236.94 Aligned_cols=112 Identities=49% Similarity=0.812 Sum_probs=108.0
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCC-ccCHHHHHH
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEA-DYPEEEFCE 209 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e-~fsag~F~e 209 (251)
.++++++|+||||||||+||..||+.++.++|++|++|+|++++|+|++|+.+|+.+++||++|..++.+ .|++++|.+
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~QvYkgldIgTakpt~~er~gv~Hhli~~~~~~~~~~sv~~F~~ 120 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKMQVYDGLKITTNQITIQDRRGVPHHLLGELNPDDGELTASEFRS 120 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHcCCceecCChheeECCcccccCCCCHHHHcCCChhhhheeccccceeeHHHHHH
Confidence 4456999999999999999999999999999999999999999999999999999999999999999987 899999999
Q ss_pred HHHHHHHHHHHcCCcEEEEcccHHHHHHHHcCC
Q 045245 210 HALRAIDKIIENGHLHIIVGGSNTYIEALVEDS 242 (251)
Q Consensus 210 ~A~k~I~eI~~~Gk~PILVGGTglYlkaLl~g~ 242 (251)
.+.+.+++++++|+.||+|||||+|++||+.|+
T Consensus 121 ~a~~~I~~i~~~~~~PI~vGGTglYi~aLl~g~ 153 (334)
T PLN02165 121 LASLSISEITSRQKLPIVAGGSNSFIHALLADR 153 (334)
T ss_pred HHHHHHHHHHHCCCcEEEECChHHHHHHHHcCC
Confidence 999999999999999999999999999999986
No 9
>PF01715 IPPT: IPP transferase; InterPro: IPR002627 tRNA isopentenyltransferases 2.5.1.8 from EC also known as tRNA delta(2)-isopentenylpyrophosphate transferases or IPP transferases. These enzymes modify both cytoplasmic and mitochondrial tRNAs at A(37) to give isopentenyl A(37) [].; GO: 0005524 ATP binding, 0008033 tRNA processing; PDB: 2ZXU_A 3FOZ_A 2ZM5_B 3D3Q_A 3EXA_B 2QGN_A 3A8T_A 3EPK_B 3EPH_A 3EPJ_A ....
Probab=99.88 E-value=2.1e-23 Score=187.05 Aligned_cols=77 Identities=44% Similarity=0.836 Sum_probs=63.2
Q ss_pred cceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHHHHHHHHHHHHcCCcEEEEcccHHHHHHHHcCCc
Q 045245 167 IQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVEDSI 243 (251)
Q Consensus 167 ~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~A~k~I~eI~~~Gk~PILVGGTglYlkaLl~g~~ 243 (251)
|||||+++|+|+||+++|+.++||||+|..+|.+.||+++|.++|.+.|++++++|+.||||||||||++||++|+.
T Consensus 1 mQvYr~ldIgTaKps~~e~~~vpHhlid~~~p~e~ysv~~f~~~a~~~i~~i~~rgk~PIlvGGTglYi~all~g~~ 77 (253)
T PF01715_consen 1 MQVYRGLDIGTAKPSPEERAGVPHHLIDILDPDEEYSVGDFQRDAREAIEDILARGKIPILVGGTGLYIQALLNGLA 77 (253)
T ss_dssp STTBTT-CTTTT---HHHHTTS-EESSS-B-TTS---HHHHHHHHHHHHHHHHHTT-EEEEEES-HHHHHHHHCTS-
T ss_pred CCccCCCceeeCCCCHHHHcCCCEeeeeeecccCCCCHHHHHHHHHHHHHHHHhcCCeEEEECChHHHHHHHHhChh
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999976
No 10
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=99.82 E-value=3.2e-20 Score=166.45 Aligned_cols=108 Identities=28% Similarity=0.364 Sum_probs=84.8
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCC-ccCHHHHHHHHH
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEA-DYPEEEFCEHAL 212 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e-~fsag~F~e~A~ 212 (251)
++++|.||||+|||.+|..||+++|++||++|++|+|++++++|++|.++|+++++++++|.....+ .+++.++.+...
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~i~a~ea~~~Li 81 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGIINAEEAHERLI 81 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S--HHHHHHHHH
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCCcCHHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999887655 799999999999
Q ss_pred HHHHHHHHcCCcEEEEcccHHHHHHHHcCC
Q 045245 213 RAIDKIIENGHLHIIVGGSNTYIEALVEDS 242 (251)
Q Consensus 213 k~I~eI~~~Gk~PILVGGTglYlkaLl~g~ 242 (251)
..+.++.+ ++.+||.|||...++++....
T Consensus 82 ~~v~~~~~-~~~~IlEGGSISLl~~m~~~~ 110 (233)
T PF01745_consen 82 SEVNSYSA-HGGLILEGGSISLLNCMAQDP 110 (233)
T ss_dssp HHHHTTTT-SSEEEEEE--HHHHHHHHH-T
T ss_pred HHHHhccc-cCceEEeCchHHHHHHHHhcc
Confidence 99999877 889999999999999998764
No 11
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=99.51 E-value=7.3e-15 Score=129.12 Aligned_cols=87 Identities=21% Similarity=0.213 Sum_probs=75.7
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHHH
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHA 211 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~A 211 (251)
++++++|+||||+|||||.++|-++.+. .-.++.+|++|+++|++|++|||++..+|.+.++.++|+|||
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l----------~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a 72 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDKL----------RFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWA 72 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcCe----------EEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEE
Confidence 6789999999999999999999988732 222456999999999999999999999999987777777666
Q ss_pred ----------HHHHHHHHHcCCcEEEE
Q 045245 212 ----------LRAIDKIIENGHLHIIV 228 (251)
Q Consensus 212 ----------~k~I~eI~~~Gk~PILV 228 (251)
+..++++++.|+.+||.
T Consensus 73 ~~~gnyYGT~~~~ve~~~~~G~~vild 99 (191)
T COG0194 73 EYHGNYYGTSREPVEQALAEGKDVILD 99 (191)
T ss_pred EEcCCcccCcHHHHHHHHhcCCeEEEE
Confidence 78899999999999995
No 12
>PRK14737 gmk guanylate kinase; Provisional
Probab=99.47 E-value=1.3e-14 Score=124.44 Aligned_cols=89 Identities=15% Similarity=0.201 Sum_probs=75.1
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHH
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEH 210 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~ 210 (251)
.++++|+|+||||||||||++.|.++++.. +...+++|++|+++|.+|++|||++..+|...+..++|+++
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~~~---------~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~ 72 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEEHPDF---------LFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEW 72 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcCCcc---------ccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEE
Confidence 357899999999999999999999876421 23358899999999999999999999998887666666665
Q ss_pred ----------HHHHHHHHHHcCCcEEEE
Q 045245 211 ----------ALRAIDKIIENGHLHIIV 228 (251)
Q Consensus 211 ----------A~k~I~eI~~~Gk~PILV 228 (251)
.++.|++.++.|+.+|+.
T Consensus 73 ~~~~g~~YGt~~~~i~~~~~~g~~~i~d 100 (186)
T PRK14737 73 AEVHDNYYGTPKAFIEDAFKEGRSAIMD 100 (186)
T ss_pred EEECCeeecCcHHHHHHHHHcCCeEEEE
Confidence 468899999999999985
No 13
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=99.38 E-value=2.4e-13 Score=110.77 Aligned_cols=98 Identities=19% Similarity=0.228 Sum_probs=77.4
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHH-----
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCE----- 209 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e----- 209 (251)
+|+|+||||||||||++.|++.++.... ...+.+|++|+++|.++++|++++..++.+.+..++|.+
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~~--------~~v~~tTr~p~~~e~~g~~~~~v~~~~~~~~~~~~~f~e~~~~~ 72 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNFG--------FSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFH 72 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccce--------ecccccccCCCCCccCCceeEEeCHHHHHHHHHcCCeEEEEEEc
Confidence 4789999999999999999998764311 124568999999999999999999988877666655555
Q ss_pred -----HHHHHHHHHHHcCCcEEEEcccHHHHHHHHcC
Q 045245 210 -----HALRAIDKIIENGHLHIIVGGSNTYIEALVED 241 (251)
Q Consensus 210 -----~A~k~I~eI~~~Gk~PILVGGTglYlkaLl~g 241 (251)
..++.+++++++|+.||+.. +.-.++.|...
T Consensus 73 ~~~yg~~~~~i~~~~~~g~~~il~~-~~~~~~~l~~~ 108 (137)
T cd00071 73 GNYYGTSKAAVEEALAEGKIVILEI-DVQGARQVKKS 108 (137)
T ss_pred CEEecCcHHHHHHHHhCCCeEEEEe-cHHHHHHHHHc
Confidence 56888999999999999865 55555555553
No 14
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=99.37 E-value=7.9e-14 Score=116.80 Aligned_cols=91 Identities=25% Similarity=0.340 Sum_probs=70.5
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHHH
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHA 211 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~A 211 (251)
++++|+|+||+|||||||+.+|.++++...- .-.+++|++|+++|.+|++|||++..+|......++|+++.
T Consensus 1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~--------~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~ 72 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTLAKRLIQEFPDKFG--------RVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYG 72 (183)
T ss_dssp SSSEEEEESSTTSSHHHHHHHHHHHSTTTEE--------EEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcccccc--------cceeecccCCcccccCCcceEEEeechhhhhhccccEEEEe
Confidence 4689999999999999999999999874321 22456999999999999999999988887755555555543
Q ss_pred ----------HHHHHHHHHcCCcEEEEcc
Q 045245 212 ----------LRAIDKIIENGHLHIIVGG 230 (251)
Q Consensus 212 ----------~k~I~eI~~~Gk~PILVGG 230 (251)
.+.|+++.++|+.+|+...
T Consensus 73 ~~~g~~YGt~~~~i~~~~~~gk~~il~~~ 101 (183)
T PF00625_consen 73 EYDGNYYGTSKSAIDKVLEEGKHCILDVD 101 (183)
T ss_dssp EETTEEEEEEHHHHHHHHHTTTEEEEEET
T ss_pred eecchhhhhccchhhHhhhcCCcEEEEcc
Confidence 6889999999999999654
No 15
>PRK00300 gmk guanylate kinase; Provisional
Probab=99.35 E-value=2.9e-13 Score=113.81 Aligned_cols=103 Identities=14% Similarity=0.204 Sum_probs=80.5
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHH--
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEF-- 207 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F-- 207 (251)
+.++.+|+|+||||||||||++.|++.++ . +|...+++|++|+.+|.++.+|++++..++...+..++|
T Consensus 2 ~~~g~~i~i~G~sGsGKstl~~~l~~~~~-~--------~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T PRK00300 2 MRRGLLIVLSGPSGAGKSTLVKALLERDP-N--------LQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLE 72 (205)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCc-c--------ceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEE
Confidence 35678999999999999999999999875 2 366778999999999999999999987776554333333
Q ss_pred --------HHHHHHHHHHHHHcCCcEEE---EcccHHHHHHHHcC
Q 045245 208 --------CEHALRAIDKIIENGHLHII---VGGSNTYIEALVED 241 (251)
Q Consensus 208 --------~e~A~k~I~eI~~~Gk~PIL---VGGTglYlkaLl~g 241 (251)
+......+++.+..|+.+|+ .+|...+.+.+.++
T Consensus 73 ~~~~~~~~y~~~~~~i~~~l~~g~~vi~dl~~~g~~~l~~~~~~~ 117 (205)
T PRK00300 73 WAEVFGNYYGTPRSPVEEALAAGKDVLLEIDWQGARQVKKKMPDA 117 (205)
T ss_pred EEEECCccccCcHHHHHHHHHcCCeEEEeCCHHHHHHHHHhCCCc
Confidence 33346778999999999988 57777777766543
No 16
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=99.34 E-value=2.2e-13 Score=112.09 Aligned_cols=97 Identities=19% Similarity=0.250 Sum_probs=77.5
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHHH-
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHA- 211 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~A- 211 (251)
+++|+|.||+||||||+++.|++.++...++ .+++|++|..+|..+.+|++++...+...+..++|.+..
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~---------~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFS---------ISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAE 71 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCcccccc---------ccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEE
Confidence 3689999999999999999999987654332 367899999999999999999977766655555554432
Q ss_pred ---------HHHHHHHHHcCCcEEE---EcccHHHHHHH
Q 045245 212 ---------LRAIDKIIENGHLHII---VGGSNTYIEAL 238 (251)
Q Consensus 212 ---------~k~I~eI~~~Gk~PIL---VGGTglYlkaL 238 (251)
++.+++++++|+.+|+ .+|...+.+++
T Consensus 72 ~~~~~y~~~~~~i~~~~~~g~~vi~d~~~~~~~~~~~~~ 110 (180)
T TIGR03263 72 VHGNYYGTPKSPVEEALAAGKDVLLEIDVQGARQVKKKF 110 (180)
T ss_pred ECCeeeCCcHHHHHHHHHCCCeEEEECCHHHHHHHHHhC
Confidence 6778999999999999 57777777775
No 17
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=99.24 E-value=3.1e-12 Score=107.68 Aligned_cols=90 Identities=17% Similarity=0.246 Sum_probs=72.6
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCH--------
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPE-------- 204 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsa-------- 204 (251)
+++|+|+||+||||+|++..|.+.++..+ ..-.+.+|+.|+++|.+|++|+|++..++...+..
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~--------~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~ 73 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAF--------ERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGE 73 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcce--------EeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEE
Confidence 46899999999999999999999875211 23346799999999999999999998887665443
Q ss_pred --HHHHHHHHHHHHHHHHcCCcEEEEcc
Q 045245 205 --EEFCEHALRAIDKIIENGHLHIIVGG 230 (251)
Q Consensus 205 --g~F~e~A~k~I~eI~~~Gk~PILVGG 230 (251)
++|+...++.|+++.+.|+.+|+.+.
T Consensus 74 ~~g~~YGt~~~~i~~~~~~~~~~ild~~ 101 (184)
T smart00072 74 YSGNYYGTSKETIRQVAEQGKHCLLDID 101 (184)
T ss_pred EcCcCcccCHHHHHHHHHcCCeEEEEEC
Confidence 44555557889999999999999864
No 18
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=99.18 E-value=1.8e-11 Score=113.89 Aligned_cols=169 Identities=14% Similarity=0.198 Sum_probs=107.7
Q ss_pred hhhcCcceeeeeccchhhhHHhhhhhhhhhh---hHHHhhhhceeeeecCCcc---eeecccccccccccccccccCccc
Q 045245 41 FCKAGRQQLVFDKSMLSTAVIWYGCLTILAR---HEYYRDMERWLIVVHPSDC---LIFAGFSRAAGFWIPQVDHRGKSN 114 (251)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 114 (251)
.-+.|.-.+.|.|..|+..+.--||-.=.|- .+..+++++=..-+-+.+. +.+.-.... ++.+ ...++.
T Consensus 7 ~v~~~~~~~pfSrgiL~rsL~~~g~~~~~A~~iA~~i~~~L~~~g~~~i~~~el~~~V~~~L~~~-~~~~----~~~~y~ 81 (301)
T PRK04220 7 IVKGKKYEMPFSKGILARSLTAAGMKPSIAYEIASEIEEELKKEGIKEITKEELRRRVYYKLIEK-DYEE----VAEKYL 81 (301)
T ss_pred EEcCCCccCCCcHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCEEeeHHHHHHHHHHHHHHh-CcHh----HHHHHH
Confidence 3456777888888888888777777554442 1333333332222222211 111111111 1010 011122
Q ss_pred hhhhccchhhhhhccCCCCeEEEEEcCCccCHHHHHHHHHHhcCCc-eEecCCcc------------------eeccccc
Q 045245 115 FISKNLVYTRVITMNFNKKKVVFVMGATATGKTKLSIDLAIHFSGE-AINSNKIQ------------------VYKGLDI 175 (251)
Q Consensus 115 ~~~~~~~~~~~~~~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~-VIS~Ds~Q------------------vYk~lsI 175 (251)
+...+ +...+|.+|+|.|+|||||||+|..||++++.. +|+.|+++ .|..|.+
T Consensus 82 ~~~~i--------~~~~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~ 153 (301)
T PRK04220 82 LWRRI--------RKSKEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVMRKIISKELLPTLHESSYTAWKS 153 (301)
T ss_pred HHHHH--------hcCCCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHHHHHhcchhhccchhhhhhhhhhc
Confidence 22211 223467899999999999999999999999986 89999999 8999999
Q ss_pred ccCCCCccccCCCCeEEeccCCCCCccCHHHHHHHHHHHHHHHHHcCCcEEEEcccHH
Q 045245 176 ATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHALRAIDKIIENGHLHIIVGGSNT 233 (251)
Q Consensus 176 gTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~A~k~I~eI~~~Gk~PILVGGTgl 233 (251)
.|++|++++ |++.++.+..+.++++ +.+.|+..+.+|...||.| .++
T Consensus 154 l~~~~~~~~-----~~l~g~~~~~~~v~~g-----i~~~I~~~~~~g~s~IiEG-vhl 200 (301)
T PRK04220 154 LRRPPPPEP-----PVIYGFERHVEPVSVG-----VEAVIERALKEGISVIIEG-VHI 200 (301)
T ss_pred ccCCCCCch-----hhhhhHHHHHHHHHHH-----HHHHHHHHHHhCCcEEEec-CCC
Confidence 999998765 7888888777766555 6677888888887766554 544
No 19
>PRK14738 gmk guanylate kinase; Provisional
Probab=99.12 E-value=1.9e-11 Score=105.34 Aligned_cols=99 Identities=14% Similarity=0.117 Sum_probs=73.2
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHH
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEH 210 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~ 210 (251)
+++++|+|+||+|||||||+..|.+... . +..-.+.+|+.|+++|.+|..|||++..++...+..+.|.++
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~~~-~--------~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~ 81 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRERKL-P--------FHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEW 81 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhcCC-c--------ccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEE
Confidence 5678999999999999999999986531 1 123346789999999999999999998887665443444443
Q ss_pred ----------HHHHHHHHHHcCCcEEEEcccHHHHHHHH
Q 045245 211 ----------ALRAIDKIIENGHLHIIVGGSNTYIEALV 239 (251)
Q Consensus 211 ----------A~k~I~eI~~~Gk~PILVGGTglYlkaLl 239 (251)
.++.|++.+++|+.+|+.. +.-+++.|-
T Consensus 82 ~~~~g~~YGt~~~~i~~~~~~g~~vi~~~-~~~g~~~l~ 119 (206)
T PRK14738 82 AEVYGNYYGVPKAPVRQALASGRDVIVKV-DVQGAASIK 119 (206)
T ss_pred EEEcCceecCCHHHHHHHHHcCCcEEEEc-CHHHHHHHH
Confidence 3578999999999988853 333444443
No 20
>PLN02772 guanylate kinase
Probab=99.12 E-value=3.7e-11 Score=115.53 Aligned_cols=99 Identities=22% Similarity=0.302 Sum_probs=78.3
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHH
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEH 210 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~ 210 (251)
...++++|+||+||||+||.++|.+.++... ....+++||+|++.|.+|+.|||++..+|...+..++|.++
T Consensus 133 ~~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~--------~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~ 204 (398)
T PLN02772 133 NAEKPIVISGPSGVGKGTLISMLMKEFPSMF--------GFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEF 204 (398)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhhhccccc--------cccccccCCCCcccccCCceEeeCCHHHHHHHHHhCcccee
Confidence 3668999999999999999999998774321 12346799999999999999999998888777776666666
Q ss_pred H----------HHHHHHHHHcCCcEEE---EcccHHHHHH
Q 045245 211 A----------LRAIDKIIENGHLHII---VGGSNTYIEA 237 (251)
Q Consensus 211 A----------~k~I~eI~~~Gk~PIL---VGGTglYlka 237 (251)
+ ++.++.+.++|+.+|| +-|.....+.
T Consensus 205 ~e~~Gn~YGTsk~~V~~vl~~Gk~vILdLD~qGar~Lr~~ 244 (398)
T PLN02772 205 ASVHGNLYGTSIEAVEVVTDSGKRCILDIDVQGARSVRAS 244 (398)
T ss_pred eeecCccccccHHHHHHHHHhCCcEEEeCCHHHHHHHHHh
Confidence 5 7899999999999997 3444443443
No 21
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.74 E-value=1.2e-08 Score=85.87 Aligned_cols=96 Identities=19% Similarity=0.241 Sum_probs=62.6
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHH---
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCE--- 209 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e--- 209 (251)
+.+++|+||+|||||||++.|+..++..++-.|+. .|+.++.. +..++++...++...+..+.|.+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~--------~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRY--------ITRPASAG---SENHIALSEQEFFTRAGQNLFALSWH 70 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEE--------CCCccchh---HHhheeEcHHHHHHHHHCCchhhHHH
Confidence 35899999999999999999999887655544432 34433322 34567777666555444444432
Q ss_pred -------HHHHHHHHHHHcCCcEEEEcccHHHHHHHHcC
Q 045245 210 -------HALRAIDKIIENGHLHIIVGGSNTYIEALVED 241 (251)
Q Consensus 210 -------~A~k~I~eI~~~Gk~PILVGGTglYlkaLl~g 241 (251)
..+ .+++.++.|+. ||++|+.-+.+.+...
T Consensus 71 ~~g~~yg~~~-~~~~~l~~g~~-VI~~G~~~~~~~~~~~ 107 (186)
T PRK10078 71 ANGLYYGVGI-EIDLWLHAGFD-VLVNGSRAHLPQARAR 107 (186)
T ss_pred HhCCccCCcH-HHHHHHhCCCE-EEEeChHHHHHHHHHH
Confidence 234 47888888876 4557777776665544
No 22
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.71 E-value=2.6e-08 Score=80.28 Aligned_cols=85 Identities=18% Similarity=0.264 Sum_probs=55.3
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHH
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCE 209 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e 209 (251)
+++++.|+|+|++||||||+|+.||++++...+..|.+- +. .++.+. . +..+......|.+
T Consensus 1 ~~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~--~~---~~g~~~-~-------------~~~~~~g~~~~~~ 61 (175)
T PRK00131 1 MLKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLI--EA---RAGKSI-P-------------EIFEEEGEAAFRE 61 (175)
T ss_pred CCCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHH--HH---HcCCCH-H-------------HHHHHHCHHHHHH
Confidence 356789999999999999999999999999999888641 10 111110 0 0011123345666
Q ss_pred HHHHHHHHHHHcCCcEEEEcccHH
Q 045245 210 HALRAIDKIIENGHLHIIVGGSNT 233 (251)
Q Consensus 210 ~A~k~I~eI~~~Gk~PILVGGTgl 233 (251)
...+.+.++......+|..||+..
T Consensus 62 ~~~~~~~~l~~~~~~vi~~g~~~~ 85 (175)
T PRK00131 62 LEEEVLAELLARHNLVISTGGGAV 85 (175)
T ss_pred HHHHHHHHHHhcCCCEEEeCCCEe
Confidence 666777777765555566676544
No 23
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.68 E-value=1.7e-08 Score=77.73 Aligned_cols=33 Identities=24% Similarity=0.460 Sum_probs=31.2
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
+|+|+|||||||||+|+.|+++++..+++.|.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~ 33 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDL 33 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecce
Confidence 589999999999999999999999999999984
No 24
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=98.60 E-value=1.1e-07 Score=80.07 Aligned_cols=83 Identities=22% Similarity=0.342 Sum_probs=57.5
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHHH
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHA 211 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~A 211 (251)
+++.|+|+||+||||||+++.|++.++..++..|.. .+++.+. +...+.+.+....|....
T Consensus 3 ~~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~--------------i~~~~g~-----~i~~~~~~~g~~~fr~~e 63 (172)
T PRK05057 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQE--------------IEKRTGA-----DIGWVFDVEGEEGFRDRE 63 (172)
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCch--------------HHHHhCc-----CHhHHHHHhCHHHHHHHH
Confidence 456799999999999999999999999999999863 1111111 112223334566777666
Q ss_pred HHHHHHHHHcCCcEEEEcccHH
Q 045245 212 LRAIDKIIENGHLHIIVGGSNT 233 (251)
Q Consensus 212 ~k~I~eI~~~Gk~PILVGGTgl 233 (251)
.+.++++...+..+|-+||...
T Consensus 64 ~~~l~~l~~~~~~vi~~ggg~v 85 (172)
T PRK05057 64 EKVINELTEKQGIVLATGGGSV 85 (172)
T ss_pred HHHHHHHHhCCCEEEEcCCchh
Confidence 7778887766666666777644
No 25
>PRK08356 hypothetical protein; Provisional
Probab=98.60 E-value=5.9e-08 Score=82.48 Aligned_cols=66 Identities=17% Similarity=0.079 Sum_probs=48.8
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHH
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEH 210 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~ 210 (251)
..+|+|+||+||||||+|+.|+ +++..+|+. ++..++..+..+.+|+|++...+....+..+|.++
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~-~~g~~~is~-----------~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~ 70 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE-EKGFCRVSC-----------SDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIEL 70 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH-HCCCcEEeC-----------CCcccccccccccccccccHHHHhhccccccHHHH
Confidence 3689999999999999999996 588888876 34445556667788999888776655444444443
No 26
>PRK06217 hypothetical protein; Validated
Probab=98.55 E-value=4.2e-07 Score=76.40 Aligned_cols=35 Identities=20% Similarity=0.326 Sum_probs=32.7
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcc
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQ 168 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~Q 168 (251)
..|+|+|++||||||+|++|+++++.++++.|.+.
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~ 36 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYF 36 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCcee
Confidence 46999999999999999999999999999999864
No 27
>KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.54 E-value=1.3e-07 Score=85.81 Aligned_cols=83 Identities=23% Similarity=0.332 Sum_probs=72.9
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcCC---ceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHH
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFSG---EAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEH 210 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~~---~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~ 210 (251)
+.++|+||+|+||+|+..+|-++++. .++ +.+|+.|++.|..+..||+++..++..++...+|.+.
T Consensus 38 ~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsv-----------S~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~fiE~ 106 (231)
T KOG0707|consen 38 KPIVLSGPSGVGKSTLLKRLREELGGMFGFSV-----------SHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEFIEF 106 (231)
T ss_pred ceEEEeCCCCcchhHHHHHHHHHcCCcceEEe-----------cCCCCCCCcccccCCcceeccHHHHHHHhhhhhhhhh
Confidence 89999999999999999999999986 233 4578899999999999999999999998888888888
Q ss_pred H----------HHHHHHHHHcCCcEEE
Q 045245 211 A----------LRAIDKIIENGHLHII 227 (251)
Q Consensus 211 A----------~k~I~eI~~~Gk~PIL 227 (251)
+ +++++++...|+..|+
T Consensus 107 a~~~gn~yGtsi~av~~~~~~gk~~il 133 (231)
T KOG0707|consen 107 ATFSGNKYGTSIAAVQRLMLSGKVCIL 133 (231)
T ss_pred hhhhcccCCchHHHHHHHHhcCCccee
Confidence 7 4678888888888776
No 28
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=98.50 E-value=5.7e-08 Score=87.25 Aligned_cols=54 Identities=22% Similarity=0.370 Sum_probs=42.3
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCc---eEecCCcceecccccccCCCCccccCCCCe
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGE---AINSNKIQVYKGLDIATNKVTASERQGVPH 190 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~---VIS~Ds~QvYk~lsIgTakP~~eEr~gvpH 190 (251)
.+..+|.|+|+|||||||+|++|.+.++.+ +|+.|.+ |+.-+ ..+.+|+..+++
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~Y--Yk~~~----~~~~~~~~~~n~ 62 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDY--YKDQS----HLPFEERNKINY 62 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeecccc--ccchh----hcCHhhcCCcCc
Confidence 345799999999999999999999999965 9999998 67443 345566655443
No 29
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.47 E-value=4.2e-07 Score=71.49 Aligned_cols=33 Identities=24% Similarity=0.490 Sum_probs=31.2
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
+|+++||+||||||+|+.|++.++..+|+.|.+
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~ 33 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEI 33 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHH
Confidence 589999999999999999999999999999985
No 30
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=98.47 E-value=4.3e-07 Score=74.05 Aligned_cols=33 Identities=21% Similarity=0.480 Sum_probs=30.6
Q ss_pred EEEEcCCccCHHHHHHHHHHhcCCceEecCCcc
Q 045245 136 VFVMGATATGKTKLSIDLAIHFSGEAINSNKIQ 168 (251)
Q Consensus 136 IvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~Q 168 (251)
|+|+||+||||||+|+.|++.++..+++.|.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~ 33 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLH 33 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEeCcccc
Confidence 578999999999999999999999999999874
No 31
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.43 E-value=1.7e-07 Score=77.48 Aligned_cols=96 Identities=16% Similarity=0.245 Sum_probs=57.6
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCH---------
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPE--------- 204 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsa--------- 204 (251)
++++|+||+||||||+++.|+..++.. ..+. -..+++|+++. ..+.+|++++..++......
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~----~~~~--~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGD----PRVH--FVRRVITRPAS---AGGENHIALSTEEFDHREDGGAFALSWQA 72 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcC----CcEE--EeeEEcccCCC---CCCccccccCHHHHHHHHHCCCEEEEEee
Confidence 579999999999999999999987642 0011 11234555543 34677777776665432111
Q ss_pred -HHHHHHHHHHHHHHHHcCCcEEEEcccHHHHHHHHc
Q 045245 205 -EEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVE 240 (251)
Q Consensus 205 -g~F~e~A~k~I~eI~~~Gk~PILVGGTglYlkaLl~ 240 (251)
+.|+... ..+.+....|..+|+.|+ +-+.+.+..
T Consensus 73 ~~~~~g~~-~~i~~~~~~g~~vv~~g~-~~~~~~~~~ 107 (179)
T TIGR02322 73 HGLSYGIP-AEIDQWLEAGDVVVVNGS-RAVLPEARQ 107 (179)
T ss_pred cCccccCh-HHHHHHHhcCCEEEEECC-HHHHHHHHH
Confidence 1222222 246666677887777776 446655543
No 32
>PRK08118 topology modulation protein; Reviewed
Probab=98.42 E-value=2.6e-07 Score=77.81 Aligned_cols=37 Identities=16% Similarity=0.255 Sum_probs=33.8
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCccee
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVY 170 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvY 170 (251)
+.|+|+||+||||||+|+.|++.++.++++.|.+...
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~ 38 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK 38 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc
Confidence 5799999999999999999999999999999987543
No 33
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=98.42 E-value=3.6e-07 Score=72.75 Aligned_cols=32 Identities=19% Similarity=0.316 Sum_probs=30.1
Q ss_pred EEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 136 VFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 136 IvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
|+|+|++||||||+|+.|++.++...++.|.+
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~ 33 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDEL 33 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHH
Confidence 78999999999999999999999999999865
No 34
>PRK07261 topology modulation protein; Provisional
Probab=98.41 E-value=3.1e-07 Score=77.36 Aligned_cols=38 Identities=16% Similarity=0.408 Sum_probs=34.3
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecc
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKG 172 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~ 172 (251)
.|+|+|+|||||||||+.|++.++.++++.|.+++..+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~ 39 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPN 39 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccc
Confidence 68999999999999999999999999999999875443
No 35
>PRK13946 shikimate kinase; Provisional
Probab=98.37 E-value=4.1e-07 Score=76.87 Aligned_cols=35 Identities=20% Similarity=0.350 Sum_probs=32.3
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNK 166 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds 166 (251)
.++.|+++|++||||||+++.||++++.+.+..|.
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 34689999999999999999999999999999985
No 36
>PRK06547 hypothetical protein; Provisional
Probab=98.32 E-value=7e-07 Score=76.15 Aligned_cols=42 Identities=24% Similarity=0.309 Sum_probs=37.2
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceeccc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGL 173 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~l 173 (251)
...+.+|+|.|++||||||+|..|++.++..+++.|.+ |+.+
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~--~~~~ 53 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDL--YPGW 53 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccce--eccc
Confidence 46678999999999999999999999999999999996 5543
No 37
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=98.31 E-value=6e-07 Score=76.40 Aligned_cols=92 Identities=21% Similarity=0.238 Sum_probs=59.3
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCcccc-CCCCeEEeccCCCCCccCHHHHHHHHH
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASER-QGVPHHLLGFVDPEADYPEEEFCEHAL 212 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr-~gvpHhLVD~~d~~e~fsag~F~e~A~ 212 (251)
.+++|+||+|||||++|..++++++..++. +.|++|..+|+ ++++||.... +..-.++..+. +..
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~~~~~-----------iat~~~~~~e~~~ri~~h~~~R--~~~w~t~E~~~-~l~ 67 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGLQVLY-----------IATAQPFDDEMAARIAHHRQRR--PAHWQTVEEPL-DLA 67 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCCCcEe-----------CcCCCCChHHHHHHHHHHHhcC--CCCCeEecccc-cHH
Confidence 378999999999999999999998754442 57888888875 6777886554 22211222222 223
Q ss_pred HHHHHHHHcCCcEEEEcccHHHHHHHHc
Q 045245 213 RAIDKIIENGHLHIIVGGSNTYIEALVE 240 (251)
Q Consensus 213 k~I~eI~~~Gk~PILVGGTglYlkaLl~ 240 (251)
+.+++....+. .|++=+...|+..++.
T Consensus 68 ~~i~~~~~~~~-~VlID~Lt~~~~n~l~ 94 (170)
T PRK05800 68 ELLRADAAPGR-CVLVDCLTTWVTNLLF 94 (170)
T ss_pred HHHHhhcCCCC-EEEehhHHHHHHHHhc
Confidence 33444333333 5666667777777665
No 38
>PRK13947 shikimate kinase; Provisional
Probab=98.26 E-value=1.8e-06 Score=70.54 Aligned_cols=33 Identities=27% Similarity=0.343 Sum_probs=31.0
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
.|+|+|++||||||+|+.||++++...+..|..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~ 35 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKE 35 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchh
Confidence 589999999999999999999999999999874
No 39
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.26 E-value=2.3e-06 Score=71.35 Aligned_cols=88 Identities=10% Similarity=0.071 Sum_probs=52.0
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcCCc--eEecCCcceecccccccCCCCccccCCCCeEEecc--CCCCCccCHHHHH
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFSGE--AINSNKIQVYKGLDIATNKVTASERQGVPHHLLGF--VDPEADYPEEEFC 208 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~--VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~--~d~~e~fsag~F~ 208 (251)
+++|+++||+||||||+|+.|+++++.. .++.|.+... ++ ....+..+++.. +. .+..+. ..+..+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~--~~----~~~~~~~~~~~~---~~~~~~~~~~-~~~~~y 71 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEA--LP----LKCQDAEGGIEF---DGDGGVSPGP-EFRLLE 71 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHh--cC----hhhccccccccc---CccCCcccch-HHHHHH
Confidence 4799999999999999999999998654 4567765211 11 000000011111 11 111111 123455
Q ss_pred HHHHHHHHHHHHcCCcEEEEcc
Q 045245 209 EHALRAIDKIIENGHLHIIVGG 230 (251)
Q Consensus 209 e~A~k~I~eI~~~Gk~PILVGG 230 (251)
......+.+..++|..+|+...
T Consensus 72 ~~~~~~~~~~l~~G~~VIvD~~ 93 (175)
T cd00227 72 GAWYEAVAAMARAGANVIADDV 93 (175)
T ss_pred HHHHHHHHHHHhCCCcEEEeee
Confidence 5566778888899999888643
No 40
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.23 E-value=9.7e-07 Score=69.37 Aligned_cols=31 Identities=16% Similarity=0.311 Sum_probs=29.6
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFSGEAINSN 165 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D 165 (251)
+|+|+|++||||||+|+.|+++++.++++.|
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 4899999999999999999999999999988
No 41
>PTZ00301 uridine kinase; Provisional
Probab=98.23 E-value=1.5e-06 Score=76.56 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=30.0
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcC-------CceEecCCc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFS-------GEAINSNKI 167 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~-------~~VIS~Ds~ 167 (251)
.++|.|+|||||||||||+.|+++++ ..+++.|.+
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~y 44 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFY 44 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCC
Confidence 47999999999999999999988762 248888997
No 42
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=98.22 E-value=2.2e-06 Score=74.53 Aligned_cols=34 Identities=26% Similarity=0.281 Sum_probs=31.2
Q ss_pred EEEEEcCCccCHHHHHHHHHHhc-CCceEecCCcc
Q 045245 135 VVFVMGATATGKTKLSIDLAIHF-SGEAINSNKIQ 168 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l-~~~VIS~Ds~Q 168 (251)
+|+|+|++||||||+|+.|++.+ +..+|+.|.+.
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf~ 35 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDFF 35 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeEEcccccc
Confidence 47899999999999999999999 58899999984
No 43
>PRK14527 adenylate kinase; Provisional
Probab=98.20 E-value=1.1e-06 Score=74.11 Aligned_cols=38 Identities=26% Similarity=0.378 Sum_probs=34.3
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
.+++++|+|.||+||||||+|+.|+++++...++.|.+
T Consensus 3 ~~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~ 40 (191)
T PRK14527 3 QTKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDI 40 (191)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHH
Confidence 35678999999999999999999999999999988665
No 44
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.20 E-value=5.6e-06 Score=63.40 Aligned_cols=32 Identities=28% Similarity=0.309 Sum_probs=28.1
Q ss_pred EEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 136 VFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 136 IvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
|+|.||+|+|||++|+.+|+.++..++..|..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~ 32 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGS 32 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETT
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccccc
Confidence 68999999999999999999999877776543
No 45
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=98.19 E-value=1.3e-06 Score=72.08 Aligned_cols=33 Identities=24% Similarity=0.480 Sum_probs=30.1
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
+|+|.||+||||||+|+.||++++...+++|.+
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~ 33 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDL 33 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChH
Confidence 479999999999999999999999999998543
No 46
>PRK13949 shikimate kinase; Provisional
Probab=98.18 E-value=2.3e-06 Score=72.24 Aligned_cols=34 Identities=26% Similarity=0.342 Sum_probs=31.5
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
+.|+|+||+||||||+++.||+.++...+..|.+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D~~ 35 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLDFF 35 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeecccHH
Confidence 4699999999999999999999999999999864
No 47
>PRK08233 hypothetical protein; Provisional
Probab=98.18 E-value=2.3e-06 Score=69.89 Aligned_cols=35 Identities=20% Similarity=0.363 Sum_probs=30.8
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcC-CceEecCCc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFS-GEAINSNKI 167 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~-~~VIS~Ds~ 167 (251)
+.+|+|.|++||||||+|..|+++++ ..++..|.+
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~ 38 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRY 38 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCE
Confidence 47999999999999999999999996 567777775
No 48
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.17 E-value=1.4e-06 Score=71.51 Aligned_cols=35 Identities=14% Similarity=0.398 Sum_probs=31.8
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
.++|+|.||+||||||+|+.|+++++...++.|.+
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~ 37 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDL 37 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHH
Confidence 46899999999999999999999999999988654
No 49
>PRK05480 uridine/cytidine kinase; Provisional
Probab=98.17 E-value=2.3e-06 Score=72.88 Aligned_cols=38 Identities=16% Similarity=0.279 Sum_probs=33.5
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC---CceEecCCc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS---GEAINSNKI 167 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~---~~VIS~Ds~ 167 (251)
+.++.+|+|+|++|||||||++.|++.++ ..+++.|.+
T Consensus 3 ~~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~ 43 (209)
T PRK05480 3 MKKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSY 43 (209)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcc
Confidence 35778999999999999999999999984 467899987
No 50
>PRK06762 hypothetical protein; Provisional
Probab=98.17 E-value=1.3e-06 Score=71.44 Aligned_cols=35 Identities=14% Similarity=0.375 Sum_probs=30.5
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcC--CceEecCCc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFS--GEAINSNKI 167 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~--~~VIS~Ds~ 167 (251)
+++|+|+|++||||||+|+.|++.++ ..+++.|.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~ 38 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVV 38 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHH
Confidence 57999999999999999999999984 567777775
No 51
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=98.17 E-value=1.8e-06 Score=69.39 Aligned_cols=33 Identities=24% Similarity=0.525 Sum_probs=30.8
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
+++|+|++||||||+|+.|++.++..+++.|.+
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~ 33 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDL 33 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCccc
Confidence 478999999999999999999999999999886
No 52
>PRK03839 putative kinase; Provisional
Probab=98.15 E-value=2e-06 Score=71.53 Aligned_cols=33 Identities=24% Similarity=0.350 Sum_probs=31.1
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
+|+|+|++||||||+++.||++++...++.|.+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~ 34 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEF 34 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehhhh
Confidence 589999999999999999999999999999875
No 53
>PRK13948 shikimate kinase; Provisional
Probab=98.15 E-value=3.5e-06 Score=72.77 Aligned_cols=37 Identities=19% Similarity=0.277 Sum_probs=33.7
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
+.+..|+++|+.||||||+++.||++++..+|..|..
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ 44 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRY 44 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHH
Confidence 5567899999999999999999999999999999854
No 54
>PRK14530 adenylate kinase; Provisional
Probab=98.14 E-value=2.2e-06 Score=73.81 Aligned_cols=35 Identities=26% Similarity=0.428 Sum_probs=31.4
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
++.|+|+||+||||||+|+.||++++...|+.|.+
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~ 37 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDA 37 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHH
Confidence 35799999999999999999999999999988665
No 55
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.11 E-value=1.1e-05 Score=60.60 Aligned_cols=37 Identities=24% Similarity=0.314 Sum_probs=29.8
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhc---CCceEecCCcc
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHF---SGEAINSNKIQ 168 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l---~~~VIS~Ds~Q 168 (251)
..+.++|.||+|+|||++++.+++.+ +..++..|.-+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~ 57 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASD 57 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhh
Confidence 45789999999999999999999987 55555554443
No 56
>PRK06696 uridine kinase; Validated
Probab=98.10 E-value=3.9e-06 Score=72.88 Aligned_cols=41 Identities=24% Similarity=0.339 Sum_probs=33.9
Q ss_pred ccCCCCeEEEEEcCCccCHHHHHHHHHHhc---CCc--eEecCCcc
Q 045245 128 MNFNKKKVVFVMGATATGKTKLSIDLAIHF---SGE--AINSNKIQ 168 (251)
Q Consensus 128 ~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l---~~~--VIS~Ds~Q 168 (251)
.+...+.+|+|+|++||||||||..|++.+ +.. +++.|.+.
T Consensus 17 ~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 17 LNLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred hCCCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 345678899999999999999999999998 333 45689874
No 57
>PRK14531 adenylate kinase; Provisional
Probab=98.09 E-value=3.7e-06 Score=70.87 Aligned_cols=34 Identities=12% Similarity=0.284 Sum_probs=31.0
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
+.|+|.||+||||||+++.||++++...|+++.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~ 36 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDL 36 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccH
Confidence 4699999999999999999999999999998544
No 58
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=98.08 E-value=2.5e-06 Score=70.02 Aligned_cols=34 Identities=24% Similarity=0.456 Sum_probs=31.5
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
+.|+|+|++||||||+++.||++++.+.+..|.+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~ 36 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQW 36 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHH
Confidence 4688899999999999999999999999999875
No 59
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.08 E-value=3e-06 Score=70.09 Aligned_cols=32 Identities=19% Similarity=0.405 Sum_probs=30.2
Q ss_pred EEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 136 VFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 136 IvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
|+|.||+||||||+|+.|+++++...+++|.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l 33 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHISTGDL 33 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEECcHH
Confidence 79999999999999999999999999998765
No 60
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=98.07 E-value=2.9e-06 Score=73.03 Aligned_cols=33 Identities=21% Similarity=0.456 Sum_probs=30.5
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
.|+|.|||||||||+|++|+++++.+.++.|.+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd~ 34 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGDI 34 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHH
Confidence 689999999999999999999999999987765
No 61
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.07 E-value=1e-05 Score=71.32 Aligned_cols=38 Identities=16% Similarity=0.403 Sum_probs=33.4
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceeccc
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGL 173 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~l 173 (251)
.+|.|.||+||||||+++.|+++++..++..|.+ |+.+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~--~r~~ 40 (217)
T TIGR00017 3 MIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAM--YRAI 40 (217)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceeeCchH--HHHH
Confidence 6899999999999999999999999999988765 5443
No 62
>PRK14532 adenylate kinase; Provisional
Probab=98.06 E-value=3.5e-06 Score=70.36 Aligned_cols=33 Identities=15% Similarity=0.223 Sum_probs=30.2
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
.|+|.||+||||||+|+.||++++...|+.|.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~ 34 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTGDM 34 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHH
Confidence 488999999999999999999999999998654
No 63
>PLN02200 adenylate kinase family protein
Probab=98.06 E-value=4.3e-06 Score=74.36 Aligned_cols=39 Identities=15% Similarity=0.305 Sum_probs=34.3
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
++..+.+|+|.||+||||||+|..|+++++...|+.+.+
T Consensus 39 ~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdl 77 (234)
T PLN02200 39 KEKTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDL 77 (234)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHH
Confidence 345678999999999999999999999999999988554
No 64
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.05 E-value=5.1e-06 Score=71.15 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=33.4
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC---CceEecCCc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS---GEAINSNKI 167 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~---~~VIS~Ds~ 167 (251)
.+++.+|+|+||+|||||||++.|+..++ ..+++.|.+
T Consensus 3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~ 43 (207)
T TIGR00235 3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNY 43 (207)
T ss_pred CCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEeccccc
Confidence 46778999999999999999999998876 568888886
No 65
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.05 E-value=4.1e-06 Score=74.59 Aligned_cols=35 Identities=17% Similarity=0.422 Sum_probs=32.4
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhc-CCceEecCCc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHF-SGEAINSNKI 167 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l-~~~VIS~Ds~ 167 (251)
+++|+++|++||||||+|+.|++++ +...++.|.+
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~ 37 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDL 37 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHH
Confidence 4789999999999999999999999 7899999885
No 66
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.04 E-value=1.2e-05 Score=66.61 Aligned_cols=28 Identities=21% Similarity=0.394 Sum_probs=25.7
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.++..|+|.|++||||||+|+.|++++.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5678999999999999999999999885
No 67
>PRK12338 hypothetical protein; Provisional
Probab=98.04 E-value=1e-05 Score=76.17 Aligned_cols=37 Identities=22% Similarity=0.361 Sum_probs=32.1
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceE-ecCCc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAI-NSNKI 167 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VI-S~Ds~ 167 (251)
.++.+|+|.|++||||||+|..||++++...+ +.|.+
T Consensus 2 ~~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~ 39 (319)
T PRK12338 2 RKPYVILIGSASGIGKSTIASELARTLNIKHLIETDFI 39 (319)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHH
Confidence 35689999999999999999999999998755 66765
No 68
>PRK00625 shikimate kinase; Provisional
Probab=98.03 E-value=4.7e-06 Score=71.27 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=31.0
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
.|+|+|++||||||+++.||++++...+..|.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~ 34 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDL 34 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHH
Confidence 489999999999999999999999999999875
No 69
>PRK00023 cmk cytidylate kinase; Provisional
Probab=98.02 E-value=9e-06 Score=71.73 Aligned_cols=39 Identities=21% Similarity=0.348 Sum_probs=34.5
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecc
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKG 172 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~ 172 (251)
++.+|+|.||+||||||+|+.||++++...++.|.+ |+.
T Consensus 3 ~~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~--~r~ 41 (225)
T PRK00023 3 KAIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAM--YRA 41 (225)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchh--HHH
Confidence 357999999999999999999999999999988875 554
No 70
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.99 E-value=7.9e-06 Score=72.90 Aligned_cols=34 Identities=24% Similarity=0.257 Sum_probs=32.1
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
..|+|.||+||||||+|+.||++++...|+.|.+
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdl 40 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINMGNI 40 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEECChH
Confidence 4599999999999999999999999999999886
No 71
>KOG0609 consensus Calcium/calmodulin-dependent serine protein kinase/membrane-associated guanylate kinase [Signal transduction mechanisms]
Probab=97.97 E-value=8.7e-06 Score=81.20 Aligned_cols=96 Identities=20% Similarity=0.301 Sum_probs=77.7
Q ss_pred hhhccCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCH
Q 045245 125 VITMNFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPE 204 (251)
Q Consensus 125 ~~~~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsa 204 (251)
++-....+.+.+++.|+.|+|-..|-++|....+...- --.+++|+.|++.|.+|++|||+...++..++.+
T Consensus 332 V~~~~~~~rrtlVLiGa~GvGr~elk~~Li~~~p~~f~--------~~VPhTtR~~r~~E~dG~eY~FVSk~~~e~dI~~ 403 (542)
T KOG0609|consen 332 VVRYPPFRRRTLVLIGAQGVGRRELKNKLIELNPDRFG--------TAVPHTTRPPRSDEVDGVEYHFVSKEEMEADIRA 403 (542)
T ss_pred HhhhcccccceEEEECCcccchHHHHHHHHhhCccccc--------cCCCCcCCCCCCCCCCCccceeeehHHHhhhhhc
Confidence 33344577799999999999999999998776542211 2358899999999999999999999999888776
Q ss_pred HHHHHH----------HHHHHHHHHHcCCcEEEE
Q 045245 205 EEFCEH----------ALRAIDKIIENGHLHIIV 228 (251)
Q Consensus 205 g~F~e~----------A~k~I~eI~~~Gk~PILV 228 (251)
+.|+++ ..+.+..++..||++||.
T Consensus 404 ~~~lE~GEy~~nlYGTs~dsVr~v~~~gKicvLd 437 (542)
T KOG0609|consen 404 GKFLEYGEYEGNLYGTSLDSVRNVIASGKICVLD 437 (542)
T ss_pred CCceecCcchhccccchHHHHHHHHHhCCEEEEe
Confidence 666654 468899999999999984
No 72
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=97.95 E-value=7.6e-06 Score=66.21 Aligned_cols=33 Identities=27% Similarity=0.396 Sum_probs=30.6
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
+|+|+|++||||||+|+.|+++++.++++.|.+
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~ 34 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLISAGDI 34 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceecHHHH
Confidence 689999999999999999999999999998653
No 73
>PRK14528 adenylate kinase; Provisional
Probab=97.95 E-value=8e-06 Score=69.53 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=31.8
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
+.|+|+||+||||||+|+.|+++++.+++++|.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~ 35 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDI 35 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHH
Confidence 5689999999999999999999999999999876
No 74
>PRK01184 hypothetical protein; Provisional
Probab=97.94 E-value=9.5e-06 Score=67.54 Aligned_cols=31 Identities=23% Similarity=0.318 Sum_probs=28.3
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSN 165 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D 165 (251)
++|+|+||+||||||+++ ++++++.+++++|
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~ 32 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMG 32 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhh
Confidence 589999999999999987 8899999999974
No 75
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.94 E-value=1e-05 Score=69.69 Aligned_cols=33 Identities=15% Similarity=0.282 Sum_probs=30.5
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
.|+|.||+||||||+|+.||++++...++.+.+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl 34 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGDM 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEECCcc
Confidence 589999999999999999999999999998654
No 76
>PRK02496 adk adenylate kinase; Provisional
Probab=97.94 E-value=7.6e-06 Score=68.29 Aligned_cols=34 Identities=24% Similarity=0.368 Sum_probs=30.9
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
+.++|.||+||||||+|+.|+++++...++.|.+
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~ 35 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDI 35 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHH
Confidence 4689999999999999999999999999988654
No 77
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.94 E-value=1.3e-05 Score=59.10 Aligned_cols=28 Identities=29% Similarity=0.498 Sum_probs=25.0
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcCCc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFSGE 160 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~ 160 (251)
+..++|.||+||||||+++.|+..+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 4689999999999999999999988753
No 78
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.94 E-value=8.5e-06 Score=69.13 Aligned_cols=33 Identities=21% Similarity=0.353 Sum_probs=28.1
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcCC---------ceEecCCc
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFSG---------EAINSNKI 167 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~~---------~VIS~Ds~ 167 (251)
+|.|+||+||||||+|++|++.++. .+++.|.+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~ 42 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDF 42 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGG
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeeccc
Confidence 6899999999999999999999972 36667765
No 79
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.93 E-value=7.7e-06 Score=70.19 Aligned_cols=32 Identities=16% Similarity=0.360 Sum_probs=29.9
Q ss_pred EEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 136 VFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 136 IvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
|+|.||+||||||+|+.|+++++...|+++.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdl 33 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDL 33 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhHH
Confidence 78999999999999999999999999998654
No 80
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.93 E-value=7.8e-06 Score=71.75 Aligned_cols=37 Identities=24% Similarity=0.507 Sum_probs=32.3
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceeccc
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGL 173 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~l 173 (251)
+|.|+||+||||||+|+.||+++|.+++|+..+ |+++
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~i--FR~~ 38 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKLVSAGTI--FREM 38 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCceeeccHH--HHHH
Confidence 689999999999999999999999999997543 5543
No 81
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=97.93 E-value=1.4e-05 Score=69.71 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=31.0
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcCCc-eEecCCc
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFSGE-AINSNKI 167 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~-VIS~Ds~ 167 (251)
++++|+|.|++||||||+|..|+++++.. +++.|.+
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~ 38 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYL 38 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHH
Confidence 45799999999999999999999999875 5666765
No 82
>PRK04182 cytidylate kinase; Provisional
Probab=97.92 E-value=8.9e-06 Score=66.17 Aligned_cols=32 Identities=19% Similarity=0.345 Sum_probs=29.6
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNK 166 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds 166 (251)
+|+|+|++||||||+|+.||++++.+++++|.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id~~~ 33 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVSAGE 33 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEecHHH
Confidence 68999999999999999999999999998654
No 83
>PRK15453 phosphoribulokinase; Provisional
Probab=97.92 E-value=7.9e-06 Score=76.33 Aligned_cols=40 Identities=18% Similarity=0.403 Sum_probs=34.7
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcC-----CceEecCCccee
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFS-----GEAINSNKIQVY 170 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds~QvY 170 (251)
.++++|+|+|+|||||||++++|++.++ ..+++.|+++-|
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~y 47 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRY 47 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEeccccccc
Confidence 5678999999999999999999998774 468999998654
No 84
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=97.91 E-value=1.6e-05 Score=71.79 Aligned_cols=39 Identities=33% Similarity=0.462 Sum_probs=34.2
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcC-CceEecCCcceec
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFS-GEAINSNKIQVYK 171 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~-~~VIS~Ds~QvYk 171 (251)
+|-.+|.|+|.|.|||||||+.|.+-++ +.+|+.|.+ ||
T Consensus 2 ~K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDF--yK 41 (225)
T KOG3308|consen 2 MKTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDF--YK 41 (225)
T ss_pred ceEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccc--cC
Confidence 3447899999999999999999999997 679999997 55
No 85
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.90 E-value=9.4e-06 Score=61.90 Aligned_cols=22 Identities=27% Similarity=0.466 Sum_probs=21.2
Q ss_pred EEEEcCCccCHHHHHHHHHHhc
Q 045245 136 VFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 136 IvIsGpTGSGKTTLA~~LAk~l 157 (251)
|+|+|+|||||||+|+.|++++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998
No 86
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.88 E-value=1.8e-05 Score=72.77 Aligned_cols=88 Identities=17% Similarity=0.285 Sum_probs=55.7
Q ss_pred hhccCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHH
Q 045245 126 ITMNFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEE 205 (251)
Q Consensus 126 ~~~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag 205 (251)
..+...++..|+|+|++||||||+++.|+++++..++..|.. +.+. .|. +..++...+...
T Consensus 126 ~~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~-i~~~-------------~G~-----~i~ei~~~~G~~ 186 (309)
T PRK08154 126 AGRRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNRE-IERE-------------AGL-----SVSEIFALYGQE 186 (309)
T ss_pred hhhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHH-HHHH-------------hCC-----CHHHHHHHHCHH
Confidence 335567778999999999999999999999999999987742 1111 111 011111123345
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEcccH
Q 045245 206 EFCEHALRAIDKIIENGHLHIIVGGSN 232 (251)
Q Consensus 206 ~F~e~A~k~I~eI~~~Gk~PILVGGTg 232 (251)
.|.+.-.+.+.++.......||..|.+
T Consensus 187 ~fr~~e~~~l~~ll~~~~~~VI~~Ggg 213 (309)
T PRK08154 187 GYRRLERRALERLIAEHEEMVLATGGG 213 (309)
T ss_pred HHHHHHHHHHHHHHhhCCCEEEECCCc
Confidence 566666677777665444455544443
No 87
>PF13173 AAA_14: AAA domain
Probab=97.88 E-value=2.2e-05 Score=62.51 Aligned_cols=90 Identities=21% Similarity=0.252 Sum_probs=54.6
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcC----CceEecCCcceecccc-----cccCCCCccccCCCCeEEeccCCCCCccC
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFS----GEAINSNKIQVYKGLD-----IATNKVTASERQGVPHHLLGFVDPEADYP 203 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~----~~VIS~Ds~QvYk~ls-----IgTakP~~eEr~gvpHhLVD~~d~~e~fs 203 (251)
.++++|.||.|+||||+++.+++.+. ...++.|........+ ..... ...+..+-++|+..--.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~iDEiq~~~--- 74 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLEL----IKPGKKYIFIDEIQYLP--- 74 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHh----hccCCcEEEEehhhhhc---
Confidence 37899999999999999999998875 4566666654322110 00000 00145677777654332
Q ss_pred HHHHHHHHHHHHHHHHHcC-CcEEEEcccHHHH
Q 045245 204 EEEFCEHALRAIDKIIENG-HLHIIVGGSNTYI 235 (251)
Q Consensus 204 ag~F~e~A~k~I~eI~~~G-k~PILVGGTglYl 235 (251)
+....++.+.+.+ +..|++-||..-.
T Consensus 75 ------~~~~~lk~l~d~~~~~~ii~tgS~~~~ 101 (128)
T PF13173_consen 75 ------DWEDALKFLVDNGPNIKIILTGSSSSL 101 (128)
T ss_pred ------cHHHHHHHHHHhccCceEEEEccchHH
Confidence 3344555555555 5677777775443
No 88
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.86 E-value=2.5e-05 Score=66.62 Aligned_cols=84 Identities=23% Similarity=0.340 Sum_probs=48.4
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc---CCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCC--ccCH
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF---SGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEA--DYPE 204 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l---~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e--~fsa 204 (251)
..+|..+++.|++||||||++..+.+.+ +..+|+.|.+.-+- |...+... ..+.+ ....
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~--------p~~~~~~~--------~~~~~~~~~~~ 75 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFH--------PDYDELLK--------ADPDEASELTQ 75 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGS--------TTHHHHHH--------HHCCCTHHHHH
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhc--------cchhhhhh--------hhhhhhHHHHH
Confidence 4778899999999999999999999987 46789999863111 33332211 11111 1122
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEc
Q 045245 205 EEFCEHALRAIDKIIENGHLHIIVG 229 (251)
Q Consensus 205 g~F~e~A~k~I~eI~~~Gk~PILVG 229 (251)
.+-..++.+.++.+.+++...|+.|
T Consensus 76 ~~a~~~~~~~~~~a~~~~~nii~E~ 100 (199)
T PF06414_consen 76 KEASRLAEKLIEYAIENRYNIIFEG 100 (199)
T ss_dssp HHHHHHHHHHHHHHHHCT--EEEE-
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEec
Confidence 2233345567788888888777754
No 89
>PRK07667 uridine kinase; Provisional
Probab=97.86 E-value=2.1e-05 Score=67.21 Aligned_cols=40 Identities=13% Similarity=0.174 Sum_probs=33.7
Q ss_pred ccCCCCeEEEEEcCCccCHHHHHHHHHHhcC-----CceEecCCc
Q 045245 128 MNFNKKKVVFVMGATATGKTKLSIDLAIHFS-----GEAINSNKI 167 (251)
Q Consensus 128 ~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds~ 167 (251)
.+.....+|+|.|++||||||+|..|++.++ ..+++.|.+
T Consensus 12 ~~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 12 KHKENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred hcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 3445668999999999999999999999874 459999986
No 90
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=97.85 E-value=2.2e-05 Score=69.06 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=28.9
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcC-------CceEecCCc
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFS-------GEAINSNKI 167 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~-------~~VIS~Ds~ 167 (251)
+|.|.||+||||||+|+.|+..+. ..+++.|.+
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f 40 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF 40 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence 478999999999999999998873 358899997
No 91
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=97.85 E-value=3.3e-05 Score=76.39 Aligned_cols=43 Identities=19% Similarity=0.375 Sum_probs=37.4
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCc-eEecCCc-ceeccc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGE-AINSNKI-QVYKGL 173 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~-VIS~Ds~-QvYk~l 173 (251)
.++.+|+++|+||+||||+|.+||+.++.. +|+.|.+ ++++++
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~lr~~ 297 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVLRAM 297 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHHHhh
Confidence 358899999999999999999999999987 8899994 656544
No 92
>PRK05439 pantothenate kinase; Provisional
Probab=97.84 E-value=3.4e-05 Score=72.34 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=33.6
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcC-------CceEecCCcc
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS-------GEAINSNKIQ 168 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~-------~~VIS~Ds~Q 168 (251)
+..++.+|+|+|++||||||+|+.|++.++ ..+|+.|.+.
T Consensus 82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL 128 (311)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 445678999999999999999999998653 4699999983
No 93
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=97.84 E-value=1.5e-05 Score=68.77 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=32.3
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
++|+|+|+.||||||+++.|++.+|..++++|.+
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~ 35 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIY 35 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHH
Confidence 5799999999999999999999999999999987
No 94
>PLN02674 adenylate kinase
Probab=97.83 E-value=1.8e-05 Score=71.83 Aligned_cols=41 Identities=12% Similarity=0.178 Sum_probs=35.2
Q ss_pred hccCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 127 TMNFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 127 ~~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
.++.+..+.|+|.||+||||||+|..||++++...||.+.+
T Consensus 25 ~~~~~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~Gdl 65 (244)
T PLN02674 25 KCSSKPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDM 65 (244)
T ss_pred hhccccCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHH
Confidence 33445567899999999999999999999999999998765
No 95
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.82 E-value=1.6e-05 Score=67.02 Aligned_cols=33 Identities=15% Similarity=0.334 Sum_probs=29.3
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcC---CceEecCCc
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFS---GEAINSNKI 167 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~---~~VIS~Ds~ 167 (251)
+|+|+||+||||||+++.|+..++ ..+++.|.+
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~ 36 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSY 36 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccc
Confidence 478999999999999999999873 579999975
No 96
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.80 E-value=4.1e-05 Score=67.34 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=22.0
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcC
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
+|+++|++||||||+|+.|++.+.
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~ 24 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLS 24 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999873
No 97
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=97.79 E-value=2.3e-05 Score=67.09 Aligned_cols=33 Identities=18% Similarity=0.339 Sum_probs=31.2
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
++|+|+|++||||||++..|++ ++..++++|.+
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~ 35 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAI 35 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHH
Confidence 6899999999999999999998 99999999986
No 98
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.79 E-value=4.2e-05 Score=70.92 Aligned_cols=39 Identities=21% Similarity=0.220 Sum_probs=31.5
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC-------CceEecCCcc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS-------GEAINSNKIQ 168 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~-------~~VIS~Ds~Q 168 (251)
..++.+|.|.||+||||||+|+.|...+. ..+++.|.+.
T Consensus 59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 35678999999999999999988866552 4578999974
No 99
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=97.78 E-value=2e-05 Score=78.26 Aligned_cols=41 Identities=12% Similarity=0.379 Sum_probs=37.3
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceeccc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGL 173 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~l 173 (251)
.++.+|.|.||+||||||+|+.|+++++...++.|.+ ||.+
T Consensus 282 ~~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~--YR~~ 322 (512)
T PRK13477 282 KRQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAM--YRAV 322 (512)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCce--ehHH
Confidence 3668999999999999999999999999999999986 8875
No 100
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.76 E-value=2.7e-05 Score=67.75 Aligned_cols=35 Identities=29% Similarity=0.387 Sum_probs=30.7
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcC-----CceEecCCc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFS-----GEAINSNKI 167 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds~ 167 (251)
|++++++||||+||||.+.+||..+. ..+|++|.+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~ 40 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTY 40 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTS
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCC
Confidence 57999999999999999999997663 469999987
No 101
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=97.75 E-value=2.3e-05 Score=65.93 Aligned_cols=32 Identities=22% Similarity=0.355 Sum_probs=30.0
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
+|+|+|++||||||+++.|++ ++..++++|.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~ 32 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKI 32 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHH
Confidence 489999999999999999998 89999999976
No 102
>PRK04040 adenylate kinase; Provisional
Probab=97.75 E-value=3.2e-05 Score=66.62 Aligned_cols=35 Identities=26% Similarity=0.298 Sum_probs=31.1
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhc--CCceEecCCc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHF--SGEAINSNKI 167 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l--~~~VIS~Ds~ 167 (251)
+++|+|+|++||||||+++.|++++ +..+++.|++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~ 38 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDV 38 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchH
Confidence 5789999999999999999999999 6778887764
No 103
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.75 E-value=2.2e-05 Score=66.70 Aligned_cols=34 Identities=24% Similarity=0.334 Sum_probs=30.2
Q ss_pred EEEEEcCCccCHHHHHHHHHHhc-----CCceEecCCcc
Q 045245 135 VVFVMGATATGKTKLSIDLAIHF-----SGEAINSNKIQ 168 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l-----~~~VIS~Ds~Q 168 (251)
+|+|.|+|||||||||..|++.+ +..+|+.|.+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~ 39 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYY 39 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcc
Confidence 47899999999999999999986 35799999984
No 104
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=97.73 E-value=0.00011 Score=63.63 Aligned_cols=101 Identities=13% Similarity=0.176 Sum_probs=56.5
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcCC--ceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHHH
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFSG--EAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHA 211 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~~--~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~A 211 (251)
++|++.|||.|||||||+.|.+.++. ..++.|.+. +.++-....+ +..-.+-... +...-....++...
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~--~~~~~~~~~~------~~g~~~~~~~-~~~~~~~~~~~~~~ 72 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFV--DMMPPGRYRP------GDGLEPAGDR-PDGGPLFRRLYAAM 72 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHH--HHS-GGGGTS------TTSEEEETTS-EEE-HHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHH--hhcCcccccC------CccccccccC-CchhHHHHHHHHHH
Confidence 68999999999999999999999975 477888762 2121111111 1011111100 00011233444445
Q ss_pred HHHHHHHHHcCCcEEEE----ccc--HHHHHHHHcCCc
Q 045245 212 LRAIDKIIENGHLHIIV----GGS--NTYIEALVEDSI 243 (251)
Q Consensus 212 ~k~I~eI~~~Gk~PILV----GGT--glYlkaLl~g~~ 243 (251)
.+.+....+.|..+|+. |+- .=+++.++.|++
T Consensus 73 ~~~iaa~a~aG~~VIvD~v~~~~~~l~d~l~~~L~~~~ 110 (174)
T PF07931_consen 73 HAAIAAMARAGNNVIVDDVFLGPRWLQDCLRRLLAGLP 110 (174)
T ss_dssp HHHHHHHHHTT-EEEEEE--TTTHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHhCCCCEEEecCccCcHHHHHHHHHHhCCCc
Confidence 67777788889998874 332 456667777765
No 105
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.73 E-value=1.8e-05 Score=64.19 Aligned_cols=30 Identities=20% Similarity=0.354 Sum_probs=27.3
Q ss_pred EEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 138 VMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 138 IsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
|.|||||||||+|..||++++...|+++.+
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~l 30 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDL 30 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHH
Confidence 689999999999999999999999998543
No 106
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.72 E-value=3e-05 Score=67.62 Aligned_cols=80 Identities=19% Similarity=0.324 Sum_probs=52.8
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHHHHH
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHALR 213 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~A~k 213 (251)
+.|+++|+.|+||||+.+.||+.++...+-.|.. -+++.+ .+..++.+..--..|.+.=.+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~--------------Ie~~~g-----~sI~eIF~~~GE~~FR~~E~~ 63 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQE--------------IEKRTG-----MSIAEIFEEEGEEGFRRLETE 63 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHH--------------HHHHHC-----cCHHHHHHHHhHHHHHHHHHH
Confidence 5789999999999999999999999998877753 111111 222222233334556655567
Q ss_pred HHHHHHHcCCcEEEEcccH
Q 045245 214 AIDKIIENGHLHIIVGGSN 232 (251)
Q Consensus 214 ~I~eI~~~Gk~PILVGGTg 232 (251)
.++++...+..+|=.||-.
T Consensus 64 vl~~l~~~~~~ViaTGGG~ 82 (172)
T COG0703 64 VLKELLEEDNAVIATGGGA 82 (172)
T ss_pred HHHHHhhcCCeEEECCCcc
Confidence 7888888775444455543
No 107
>PRK06893 DNA replication initiation factor; Validated
Probab=97.68 E-value=0.00011 Score=64.42 Aligned_cols=91 Identities=15% Similarity=0.257 Sum_probs=53.4
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhc-----CCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHH
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHF-----SGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEE 206 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l-----~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~ 206 (251)
..+.++|.||+|+|||+|+.+++.++ +...++++..+.+ +.+ ..+.....+--++|..+... ...+
T Consensus 38 ~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~------~~~-~~~~~~~~dlLilDDi~~~~--~~~~ 108 (229)
T PRK06893 38 QQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYF------SPA-VLENLEQQDLVCLDDLQAVI--GNEE 108 (229)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhh------hHH-HHhhcccCCEEEEeChhhhc--CChH
Confidence 34578999999999999999999875 3344444321100 000 01122344566777655322 1223
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEccc
Q 045245 207 FCEHALRAIDKIIENGHLHIIVGGS 231 (251)
Q Consensus 207 F~e~A~k~I~eI~~~Gk~PILVGGT 231 (251)
+.+.....++...++|+.+||++++
T Consensus 109 ~~~~l~~l~n~~~~~~~~illits~ 133 (229)
T PRK06893 109 WELAIFDLFNRIKEQGKTLLLISAD 133 (229)
T ss_pred HHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 4445566677777777777777664
No 108
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=97.65 E-value=0.0001 Score=73.54 Aligned_cols=38 Identities=13% Similarity=0.203 Sum_probs=34.8
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
..++.+|+++|++||||||+|+++++..+..+||.|.+
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~l 403 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTL 403 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHH
Confidence 46788999999999999999999999999999999864
No 109
>PLN02348 phosphoribulokinase
Probab=97.64 E-value=5.8e-05 Score=73.15 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=35.3
Q ss_pred ccCCCCeEEEEEcCCccCHHHHHHHHHHhcCC--------------------ceEecCCcce
Q 045245 128 MNFNKKKVVFVMGATATGKTKLSIDLAIHFSG--------------------EAINSNKIQV 169 (251)
Q Consensus 128 ~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~--------------------~VIS~Ds~Qv 169 (251)
.+..++.+|.|.|++||||||||++|++.++. .+|+.|.+..
T Consensus 44 ~~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~ 105 (395)
T PLN02348 44 AADDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHS 105 (395)
T ss_pred ccCCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccC
Confidence 34467789999999999999999999998862 4899999754
No 110
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=97.64 E-value=6.9e-05 Score=64.97 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=31.9
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
+.+.+|+|+|++||||||++..|++ ++..++++|.+
T Consensus 3 ~~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i 38 (208)
T PRK14731 3 SLPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRV 38 (208)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHH
Confidence 3457899999999999999999986 89999999954
No 111
>PRK07429 phosphoribulokinase; Provisional
Probab=97.61 E-value=6.6e-05 Score=70.49 Aligned_cols=39 Identities=21% Similarity=0.181 Sum_probs=34.1
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcC---CceEecCCc
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS---GEAINSNKI 167 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~---~~VIS~Ds~ 167 (251)
+..++.+|.|.|++||||||+++.|++.++ ..+++.|.+
T Consensus 4 ~~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~ 45 (327)
T PRK07429 4 MPDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDY 45 (327)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEeccc
Confidence 446778999999999999999999999987 568899986
No 112
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=97.61 E-value=7.1e-05 Score=66.08 Aligned_cols=36 Identities=17% Similarity=0.215 Sum_probs=33.2
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
.+.+|+|+|+.||||||+++.|+++++..++.+|.+
T Consensus 5 ~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i 40 (204)
T PRK14733 5 NTYPIGITGGIASGKSTATRILKEKLNLNVVCADTI 40 (204)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHH
Confidence 457899999999999999999999999999999986
No 113
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=97.59 E-value=7.6e-05 Score=69.72 Aligned_cols=42 Identities=19% Similarity=0.369 Sum_probs=37.2
Q ss_pred hhccCCCCeEEEEEcCCccCHHHHHHHHHHhcCC-ceEecCCc
Q 045245 126 ITMNFNKKKVVFVMGATATGKTKLSIDLAIHFSG-EAINSNKI 167 (251)
Q Consensus 126 ~~~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~-~VIS~Ds~ 167 (251)
..+.+..+.+|+|=|+||+||||+|-.||.++|. .+|+.|++
T Consensus 82 ~ir~~~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~I 124 (299)
T COG2074 82 RIRKMKRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSI 124 (299)
T ss_pred HHhccCCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHH
Confidence 3456778899999999999999999999999997 48999987
No 114
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.59 E-value=6.7e-05 Score=54.63 Aligned_cols=23 Identities=22% Similarity=0.531 Sum_probs=21.3
Q ss_pred EEEEEcCCccCHHHHHHHHHHhc
Q 045245 135 VVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l 157 (251)
+|+|+|++||||||+++.|++.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999995
No 115
>PRK08084 DNA replication initiation factor; Provisional
Probab=97.59 E-value=0.00012 Score=64.70 Aligned_cols=106 Identities=9% Similarity=0.162 Sum_probs=58.8
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcC-----CceEecCCcceecccccccCCCC-ccccCCCCeEEeccCCCCCccCHH
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFS-----GEAINSNKIQVYKGLDIATNKVT-ASERQGVPHHLLGFVDPEADYPEE 205 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds~QvYk~lsIgTakP~-~eEr~gvpHhLVD~~d~~e~fsag 205 (251)
....++|.||+|+|||+|+..++++.. ...+++|...-+ .+. .+.....+.-++|..+.-. ...
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~~~~dlliiDdi~~~~--~~~ 113 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWF--------VPEVLEGMEQLSLVCIDNIECIA--GDE 113 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhh--------hHHHHHHhhhCCEEEEeChhhhc--CCH
Confidence 446899999999999999999988654 234444332100 000 1112223455666554321 113
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEEcccHHHHHHHHcCCchhhhcc
Q 045245 206 EFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVEDSIINFRAN 249 (251)
Q Consensus 206 ~F~e~A~k~I~eI~~~Gk~PILVGGTglYlkaLl~g~~~~~~~~ 249 (251)
++.+.....++...+.|+..+|..|+.-..+ +....+++|-|
T Consensus 114 ~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~--l~~~~~~L~SR 155 (235)
T PRK08084 114 LWEMAIFDLYNRILESGRTRLLITGDRPPRQ--LNLGLPDLASR 155 (235)
T ss_pred HHHHHHHHHHHHHHHcCCCeEEEeCCCChHH--cCcccHHHHHH
Confidence 4444555667777777876666666644422 23344555544
No 116
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.58 E-value=7e-05 Score=62.04 Aligned_cols=37 Identities=22% Similarity=0.411 Sum_probs=29.9
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcC-----CceEecCCc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFS-----GEAINSNKI 167 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds~ 167 (251)
.++.+|+|.|++||||||+|+.|++.+. ..++..|.+
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~ 43 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAV 43 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccH
Confidence 3567999999999999999999999873 345666654
No 117
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.58 E-value=0.00035 Score=58.45 Aligned_cols=77 Identities=22% Similarity=0.178 Sum_probs=55.9
Q ss_pred ccCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHH
Q 045245 128 MNFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEF 207 (251)
Q Consensus 128 ~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F 207 (251)
.+..||.++-+.||||+|||.+++.||+.+ |+. +....-=|+++...++...-.+.+|
T Consensus 48 ~~p~KpLVlSfHG~tGtGKn~v~~liA~~l------------y~~----------G~~S~~V~~f~~~~hFP~~~~v~~Y 105 (127)
T PF06309_consen 48 PNPRKPLVLSFHGWTGTGKNFVSRLIAEHL------------YKS----------GMKSPFVHQFIATHHFPHNSNVDEY 105 (127)
T ss_pred CCCCCCEEEEeecCCCCcHHHHHHHHHHHH------------Hhc----------ccCCCceeeecccccCCCchHHHHH
Confidence 456777788899999999999999999986 221 0111223556777777777789999
Q ss_pred HHHHHHHHHHHHHcCCcEE
Q 045245 208 CEHALRAIDKIIENGHLHI 226 (251)
Q Consensus 208 ~e~A~k~I~eI~~~Gk~PI 226 (251)
.++.++.|.+...+-...+
T Consensus 106 k~~L~~~I~~~v~~C~rsl 124 (127)
T PF06309_consen 106 KEQLKSWIRGNVSRCPRSL 124 (127)
T ss_pred HHHHHHHHHHHHHhCCcCe
Confidence 9999999988777544333
No 118
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.58 E-value=0.00024 Score=59.43 Aligned_cols=29 Identities=17% Similarity=0.455 Sum_probs=26.6
Q ss_pred EcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 139 MGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 139 sGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
+||+||||||+++.|++.++...+..|.+
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~ 29 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFL 29 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccC
Confidence 59999999999999999999888888865
No 119
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.57 E-value=0.00018 Score=59.27 Aligned_cols=23 Identities=22% Similarity=0.533 Sum_probs=21.5
Q ss_pred EEEEEcCCccCHHHHHHHHHHhc
Q 045245 135 VVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l 157 (251)
+++|+|++||||||+|+.|++.+
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l 23 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKL 23 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999988
No 120
>PLN02199 shikimate kinase
Probab=97.57 E-value=9.2e-05 Score=69.67 Aligned_cols=82 Identities=13% Similarity=0.238 Sum_probs=53.9
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCcccc-CCCCeEEeccCCCCCccCHHHHH
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASER-QGVPHHLLGFVDPEADYPEEEFC 208 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr-~gvpHhLVD~~d~~e~fsag~F~ 208 (251)
.-+++.|+|+|++||||||+++.||+.++..+|.+|.+= ++. .+ .+..++.+.+-...|.
T Consensus 99 ~l~~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lI--------------e~~~~G-----~sI~eIf~~~GE~~FR 159 (303)
T PLN02199 99 YLNGRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLI--------------EQAMNG-----TSVAEIFVHHGENFFR 159 (303)
T ss_pred HcCCCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHH--------------HHHhcC-----CCHHHHHHHhCHHHHH
Confidence 344678999999999999999999999999999998741 110 00 1111222333445666
Q ss_pred HHHHHHHHHHHHcCCcEEEEcc
Q 045245 209 EHALRAIDKIIENGHLHIIVGG 230 (251)
Q Consensus 209 e~A~k~I~eI~~~Gk~PILVGG 230 (251)
+.-.+.+.++......+|=+||
T Consensus 160 ~~E~e~L~~L~~~~~~VIStGG 181 (303)
T PLN02199 160 GKETDALKKLSSRYQVVVSTGG 181 (303)
T ss_pred HHHHHHHHHHHhcCCEEEECCC
Confidence 6666777777655444443566
No 121
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.56 E-value=0.00013 Score=64.86 Aligned_cols=27 Identities=26% Similarity=0.295 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
+...-+++.||+|+||||+|+.+|+.+
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 334678999999999999999999875
No 122
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.55 E-value=8e-05 Score=73.84 Aligned_cols=81 Identities=16% Similarity=0.282 Sum_probs=52.6
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHHH
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHA 211 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~A 211 (251)
+.+.|+++|++||||||+++.||++++.+.+..|.. + +++.| .+..++.+..-...|.+.=
T Consensus 5 ~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~-i-------------e~~~g-----~si~eif~~~Ge~~FR~~E 65 (542)
T PRK14021 5 RRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVE-I-------------EREIG-----MSIPSYFEEYGEPAFREVE 65 (542)
T ss_pred CCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHH-H-------------HHHHC-----cCHHHHHHHHHHHHHHHHH
Confidence 447899999999999999999999999999999874 1 11111 1111222233345565555
Q ss_pred HHHHHHHHHcCCcEEEEccc
Q 045245 212 LRAIDKIIENGHLHIIVGGS 231 (251)
Q Consensus 212 ~k~I~eI~~~Gk~PILVGGT 231 (251)
.+.++++......+|-+||-
T Consensus 66 ~~~l~~~~~~~~~VIs~GGG 85 (542)
T PRK14021 66 ADVVADMLEDFDGIFSLGGG 85 (542)
T ss_pred HHHHHHHHhcCCeEEECCCc
Confidence 56677776544443336664
No 123
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.54 E-value=0.00011 Score=64.07 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=32.4
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcCC-----ce-EecCCc
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSG-----EA-INSNKI 167 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~-----~V-IS~Ds~ 167 (251)
+..++.+++|.||+|||||||++.|+..+.. .+ ++.|.+
T Consensus 29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~ 73 (229)
T PRK09270 29 EPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGF 73 (229)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccc
Confidence 4467889999999999999999999988752 24 888875
No 124
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.54 E-value=9.7e-05 Score=63.01 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=28.9
Q ss_pred hhccCCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 126 ITMNFNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 126 ~~~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..++.+++.+|+|+|++||||||||+.|++.+
T Consensus 17 ~~~~~~~~~~i~i~G~~GsGKSTla~~l~~~l 48 (198)
T PRK03846 17 EQLHGHKGVVLWFTGLSGSGKSTVAGALEEAL 48 (198)
T ss_pred HHhcCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45677889999999999999999999999976
No 125
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.53 E-value=8e-05 Score=63.59 Aligned_cols=91 Identities=16% Similarity=0.236 Sum_probs=57.5
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccC-CCCeEEeccCCCCCccCHHHHHHHHHH
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQ-GVPHHLLGFVDPEADYPEEEFCEHALR 213 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~-gvpHhLVD~~d~~e~fsag~F~e~A~k 213 (251)
+++|+|++|||||++|..++...+..++.. .|.++-..|++ .+..| ... . ...|+..++..+..+
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~~~~~~y~-----------at~~~~d~em~~rI~~H-~~~-R-~~~w~t~E~~~~l~~ 66 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAELGGPVTYI-----------ATAEAFDDEMAERIARH-RKR-R-PAHWRTIETPRDLVS 66 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCeEEE-----------EccCcCCHHHHHHHHHH-HHh-C-CCCceEeecHHHHHH
Confidence 378999999999999999998865544433 45556555543 23333 111 1 334555555555556
Q ss_pred HHHHHHHcCCcEEEEcccHHHHHHHHcC
Q 045245 214 AIDKIIENGHLHIIVGGSNTYIEALVED 241 (251)
Q Consensus 214 ~I~eI~~~Gk~PILVGGTglYlkaLl~g 241 (251)
.+.+.. +..+||+=+-..|+..++.+
T Consensus 67 ~l~~~~--~~~~VLIDclt~~~~n~l~~ 92 (169)
T cd00544 67 ALKELD--PGDVVLIDCLTLWVTNLLFA 92 (169)
T ss_pred HHHhcC--CCCEEEEEcHhHHHHHhCCC
Confidence 654431 44567877788888888764
No 126
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=97.53 E-value=7.4e-05 Score=65.83 Aligned_cols=41 Identities=22% Similarity=0.315 Sum_probs=36.9
Q ss_pred ccCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcc
Q 045245 128 MNFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQ 168 (251)
Q Consensus 128 ~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~Q 168 (251)
++.+-+-+|+|+|++||||||++++|+++++.+.+-+|.++
T Consensus 7 t~~~~k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~H 47 (191)
T KOG3354|consen 7 TMGPFKYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLH 47 (191)
T ss_pred ccCCCceeEEEEecCCCChhhHHHHHHHHhCCcccccccCC
Confidence 34566679999999999999999999999999999999885
No 127
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.53 E-value=7.2e-05 Score=63.04 Aligned_cols=33 Identities=24% Similarity=0.391 Sum_probs=30.9
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
+|+|+|+.||||||+++.|++..+..++++|.+
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~ 33 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKI 33 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHH
Confidence 489999999999999999999888999999987
No 128
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.51 E-value=0.00012 Score=67.02 Aligned_cols=82 Identities=17% Similarity=0.262 Sum_probs=42.0
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcC-----CceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHH
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFS-----GEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFC 208 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~ 208 (251)
++|+|+|.|||||||+|+.|++.+. ..+++-|++. ++..+..+.-....-.
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~------------------------~~~~~y~~~~~Ek~~R 57 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG------------------------IDRNDYADSKKEKEAR 57 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-------------------------TTSSS--GGGHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc------------------------cchhhhhchhhhHHHH
Confidence 6899999999999999999999763 2344433331 1111111112233333
Q ss_pred HHHHHHHHHHHHcCCcEEEEcccHHHHHHHHcC
Q 045245 209 EHALRAIDKIIENGHLHIIVGGSNTYIEALVED 241 (251)
Q Consensus 209 e~A~k~I~eI~~~Gk~PILVGGTglYlkaLl~g 241 (251)
...+.+++..+.++.++|+. ..+|++++-..
T Consensus 58 ~~l~s~v~r~ls~~~iVI~D--d~nYiKg~RYe 88 (270)
T PF08433_consen 58 GSLKSAVERALSKDTIVILD--DNNYIKGMRYE 88 (270)
T ss_dssp HHHHHHHHHHHTT-SEEEE---S---SHHHHHH
T ss_pred HHHHHHHHHhhccCeEEEEe--CCchHHHHHHH
Confidence 34566677776666554443 35588876543
No 129
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=97.51 E-value=0.00012 Score=62.28 Aligned_cols=35 Identities=23% Similarity=0.473 Sum_probs=30.7
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
+.+++|+||+|+||||+++.|+..++...+..|.+
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~ 37 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDL 37 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCEEECCccc
Confidence 46899999999999999999999998877777654
No 130
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.49 E-value=8.7e-05 Score=67.25 Aligned_cols=38 Identities=16% Similarity=0.364 Sum_probs=33.6
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceeccc
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGL 173 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~l 173 (251)
.+|.|=||+||||||+|+.||++++...++...+ ||-+
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGam--YRa~ 42 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAM--YRAV 42 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCCCeecccHH--HHHH
Confidence 7899999999999999999999999988877665 7654
No 131
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.00021 Score=65.71 Aligned_cols=83 Identities=23% Similarity=0.340 Sum_probs=61.8
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCC--ccCHHH
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEA--DYPEEE 206 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e--~fsag~ 206 (251)
..+++-+-+|+||+||||||||..|+-.-+-+|.+.+- .|++-+|+.-.|.+--+.| .|+.+..|.+ -++..+
T Consensus 26 ~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I--~~~GedI~~l~~~ERAr~G---ifLafQ~P~ei~GV~~~~ 100 (251)
T COG0396 26 TVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEI--LFDGEDILELSPDERARAG---IFLAFQYPVEIPGVTNSD 100 (251)
T ss_pred eEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceE--EECCcccccCCHhHHHhcC---CEEeecCCccCCCeeHHH
Confidence 34677899999999999999999998766656666654 3888898776666555555 4677777666 478889
Q ss_pred HHHHHHHHHH
Q 045245 207 FCEHALRAID 216 (251)
Q Consensus 207 F~e~A~k~I~ 216 (251)
|.+.|..+..
T Consensus 101 fLr~a~n~~~ 110 (251)
T COG0396 101 FLRAAMNARR 110 (251)
T ss_pred HHHHHHHhhh
Confidence 9887766543
No 132
>PRK14526 adenylate kinase; Provisional
Probab=97.46 E-value=0.00012 Score=64.44 Aligned_cols=33 Identities=15% Similarity=0.275 Sum_probs=30.2
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
.|+|.||+||||||+++.|++.++...++++.+
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~l 34 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHISTGDL 34 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeecChH
Confidence 478999999999999999999999999988765
No 133
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=97.46 E-value=9.3e-05 Score=74.74 Aligned_cols=39 Identities=23% Similarity=0.330 Sum_probs=34.5
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceeccc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGL 173 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~l 173 (251)
.++|+|.||+||||||+|+.||++++.+.+..|. +|+.+
T Consensus 442 ~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~--~~~~~ 480 (661)
T PRK11860 442 VPVICIDGPTASGKGTVAARVAEALGYHYLDSGA--LYRLT 480 (661)
T ss_pred cceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHH--hhhHH
Confidence 4589999999999999999999999999987775 58776
No 134
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.46 E-value=0.00013 Score=57.83 Aligned_cols=26 Identities=35% Similarity=0.530 Sum_probs=23.7
Q ss_pred EEEEcCCccCHHHHHHHHHHhcCCce
Q 045245 136 VFVMGATATGKTKLSIDLAIHFSGEA 161 (251)
Q Consensus 136 IvIsGpTGSGKTTLA~~LAk~l~~~V 161 (251)
|+|.||||+|||++|+.+|+.++..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~ 27 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPV 27 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcce
Confidence 78999999999999999999998654
No 135
>PRK13975 thymidylate kinase; Provisional
Probab=97.46 E-value=0.00017 Score=60.15 Aligned_cols=28 Identities=25% Similarity=0.273 Sum_probs=25.4
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcCCc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFSGE 160 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~ 160 (251)
++.|+|.|+.||||||+++.|+++++..
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~ 29 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNAF 29 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3689999999999999999999999853
No 136
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=97.43 E-value=0.00014 Score=63.00 Aligned_cols=33 Identities=12% Similarity=0.145 Sum_probs=30.6
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
++|+|+|++||||||+++.|++ +|..++++|.+
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i 34 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQV 34 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHH
Confidence 5799999999999999999987 89999999975
No 137
>PLN02459 probable adenylate kinase
Probab=97.42 E-value=0.00017 Score=66.40 Aligned_cols=34 Identities=15% Similarity=0.196 Sum_probs=30.3
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
..|+|.||+||||||+|..|+++++...|+.+.+
T Consensus 30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdl 63 (261)
T PLN02459 30 VNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDL 63 (261)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHH
Confidence 4588899999999999999999999999987654
No 138
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=97.40 E-value=0.00017 Score=65.22 Aligned_cols=31 Identities=26% Similarity=0.368 Sum_probs=27.3
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcCCceE
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAI 162 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VI 162 (251)
...+|+|.||-|+||||||++||++++..++
T Consensus 3 ~~~~IvI~G~IG~GKSTLa~~La~~l~~~~~ 33 (216)
T COG1428 3 VAMVIVIEGMIGAGKSTLAQALAEHLGFKVF 33 (216)
T ss_pred cccEEEEecccccCHHHHHHHHHHHhCCcee
Confidence 4579999999999999999999999986444
No 139
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=97.40 E-value=0.00016 Score=63.83 Aligned_cols=34 Identities=18% Similarity=0.288 Sum_probs=31.9
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
+.+|.|+|.+||||||+|+.+++ +|.+++++|.+
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v 35 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDV 35 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHH
Confidence 47899999999999999999999 99999999986
No 140
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.37 E-value=0.00017 Score=60.25 Aligned_cols=31 Identities=19% Similarity=0.431 Sum_probs=27.6
Q ss_pred hccCCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 127 TMNFNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 127 ~~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
+.+..++.+++|+|++||||||+|+.|+..+
T Consensus 12 ~~~~~~~~~i~i~G~~GsGKstla~~l~~~l 42 (184)
T TIGR00455 12 ALNGHRGVVIWLTGLSGSGKSTIANALEKKL 42 (184)
T ss_pred HHhCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4455778999999999999999999999886
No 141
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=97.37 E-value=0.00021 Score=58.35 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=23.0
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
++|+|.|+.||||||+++.|++.++
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~ 25 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLE 25 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999999984
No 142
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=97.36 E-value=0.00016 Score=73.50 Aligned_cols=39 Identities=21% Similarity=0.340 Sum_probs=34.6
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccc
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLD 174 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~ls 174 (251)
.+|+|.||+||||||+|+.||++++...++...+ |+.+.
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~--~r~~~ 40 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAM--YRACA 40 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEeecCcE--eHHHH
Confidence 3789999999999999999999999999988875 77754
No 143
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=97.36 E-value=0.00017 Score=65.35 Aligned_cols=34 Identities=24% Similarity=0.265 Sum_probs=32.3
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
++|+|+|..||||||+++.|.+++|..+|.+|.+
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~i 35 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLV 35 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHH
Confidence 5899999999999999999999999999999986
No 144
>PRK00698 tmk thymidylate kinase; Validated
Probab=97.36 E-value=0.00017 Score=60.11 Aligned_cols=27 Identities=15% Similarity=0.147 Sum_probs=24.6
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
++++|+|.||.||||||+++.|++.++
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~ 28 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELLE 28 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 357999999999999999999999874
No 145
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.35 E-value=0.0011 Score=50.98 Aligned_cols=59 Identities=15% Similarity=0.071 Sum_probs=38.6
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCcc--ccCCCCeEEeccCCCCCcc
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTAS--ERQGVPHHLLGFVDPEADY 202 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~e--Er~gvpHhLVD~~d~~e~f 202 (251)
.|+|.|+||+|||||.+.|...- ...++. .+-.|..+... +..+.++.++|.-.+.+.-
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~-~~~~~~--------~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~ 61 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKK-LAKVSN--------IPGTTRDPVYGQFEYNNKKFILVDTPGINDGE 61 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTST-SSEESS--------STTSSSSEEEEEEEETTEEEEEEESSSCSSSS
T ss_pred CEEEECCCCCCHHHHHHHHhccc-cccccc--------cccceeeeeeeeeeeceeeEEEEeCCCCcccc
Confidence 47899999999999999998632 122221 13345555332 2456677888888776643
No 146
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.34 E-value=0.00015 Score=67.60 Aligned_cols=35 Identities=17% Similarity=0.353 Sum_probs=30.3
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcC-----CceEecCCcce
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFS-----GEAINSNKIQV 169 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds~Qv 169 (251)
+|.|+|+|||||||++++|++.++ ..+|+.|++.-
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 478999999999999999998764 46899999854
No 147
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.33 E-value=0.00028 Score=69.44 Aligned_cols=33 Identities=15% Similarity=0.327 Sum_probs=31.0
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
.|+|+|++||||||+++.||++++...+.+|..
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~ 34 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEE 34 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEEECcHH
Confidence 489999999999999999999999999999874
No 148
>PRK06761 hypothetical protein; Provisional
Probab=97.33 E-value=0.00035 Score=64.80 Aligned_cols=33 Identities=21% Similarity=0.277 Sum_probs=27.9
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSN 165 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D 165 (251)
+++|+|.||+||||||+++.|++++...-++.+
T Consensus 3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~ 35 (282)
T PRK06761 3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVE 35 (282)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEE
Confidence 468999999999999999999999976545443
No 149
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=97.32 E-value=0.00018 Score=60.04 Aligned_cols=27 Identities=19% Similarity=0.186 Sum_probs=24.9
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFSG 159 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~ 159 (251)
+++|+|.|+.||||||+++.|++.++.
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~ 29 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQE 29 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999999864
No 150
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.31 E-value=0.00049 Score=65.74 Aligned_cols=28 Identities=18% Similarity=0.332 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.+.-+|+|.|||||||||...++-...|
T Consensus 123 ~~~GLILVTGpTGSGKSTTlAamId~iN 150 (353)
T COG2805 123 SPRGLILVTGPTGSGKSTTLAAMIDYIN 150 (353)
T ss_pred CCCceEEEeCCCCCcHHHHHHHHHHHHh
Confidence 3446899999999999998888777665
No 151
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.30 E-value=0.00019 Score=58.72 Aligned_cols=27 Identities=30% Similarity=0.389 Sum_probs=21.1
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcCCceE
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFSGEAI 162 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~~~VI 162 (251)
+|+|+|+.|+|||||+..|++. +..++
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred CEEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 4899999999999999999998 76666
No 152
>PRK09087 hypothetical protein; Validated
Probab=97.30 E-value=0.0011 Score=58.75 Aligned_cols=82 Identities=20% Similarity=0.250 Sum_probs=49.9
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHHH
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHA 211 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~A 211 (251)
..+.++|.||+|||||+|++.+++..+...++.+.+. .+ +.+ .... ...++|..+... .+. +..
T Consensus 43 ~~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~--~~--~~~------~~~~-~~l~iDDi~~~~-~~~----~~l 106 (226)
T PRK09087 43 PSPVVVLAGPVGSGKTHLASIWREKSDALLIHPNEIG--SD--AAN------AAAE-GPVLIEDIDAGG-FDE----TGL 106 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcc--hH--HHH------hhhc-CeEEEECCCCCC-CCH----HHH
Confidence 3467999999999999999999998877777764321 00 000 0000 245666665432 222 334
Q ss_pred HHHHHHHHHcCCcEEEEc
Q 045245 212 LRAIDKIIENGHLHIIVG 229 (251)
Q Consensus 212 ~k~I~eI~~~Gk~PILVG 229 (251)
...++.+.+.|+..|+.+
T Consensus 107 f~l~n~~~~~g~~ilits 124 (226)
T PRK09087 107 FHLINSVRQAGTSLLMTS 124 (226)
T ss_pred HHHHHHHHhCCCeEEEEC
Confidence 566777777776544444
No 153
>PLN02318 phosphoribulokinase/uridine kinase
Probab=97.30 E-value=0.00026 Score=72.35 Aligned_cols=39 Identities=18% Similarity=0.171 Sum_probs=34.0
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcC-CceEecCCc
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS-GEAINSNKI 167 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~-~~VIS~Ds~ 167 (251)
+.....+|.|.|||||||||||+.|+..++ ..+|+.|.+
T Consensus 61 ~~~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy 100 (656)
T PLN02318 61 KNDGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNY 100 (656)
T ss_pred cCCCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcce
Confidence 445668999999999999999999999985 469999996
No 154
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.29 E-value=0.00044 Score=63.09 Aligned_cols=83 Identities=18% Similarity=0.231 Sum_probs=46.9
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcCCc--eEecCCcceeccc-ccccCCCCccccCCCCeEEeccCCCCCccCHHHHHH
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFSGE--AINSNKIQVYKGL-DIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCE 209 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~--VIS~Ds~QvYk~l-sIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e 209 (251)
-.-+++.||+|+||||||.-+|++++.. .+|+..++--.++ .+.| ..+.-+--|+|+.. .|-.
T Consensus 50 l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~~il~------~l~~~~ILFIDEIH--------Rlnk 115 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLAAILT------NLKEGDILFIDEIH--------RLNK 115 (233)
T ss_dssp --EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHHHHHH------T--TT-EEEECTCC--------C--H
T ss_pred cceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHHHHHH------hcCCCcEEEEechh--------hccH
Confidence 4568999999999999999999999865 3444332211111 1111 11222346677443 2333
Q ss_pred HHHHHHHHHHHcCCcEEEEc
Q 045245 210 HALRAIDKIIENGHLHIIVG 229 (251)
Q Consensus 210 ~A~k~I~eI~~~Gk~PILVG 229 (251)
...+.+-...+.+..-|++|
T Consensus 116 ~~qe~LlpamEd~~idiiiG 135 (233)
T PF05496_consen 116 AQQEILLPAMEDGKIDIIIG 135 (233)
T ss_dssp HHHHHHHHHHHCSEEEEEBS
T ss_pred HHHHHHHHHhccCeEEEEec
Confidence 45566777777788877766
No 155
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=97.28 E-value=0.00056 Score=67.59 Aligned_cols=39 Identities=18% Similarity=0.165 Sum_probs=32.4
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC-----CceEecCCcc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS-----GEAINSNKIQ 168 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds~Q 168 (251)
..++.+|.|+|++|||||||++.|...+. ..+|+.|.+.
T Consensus 209 ~~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY 252 (460)
T PLN03046 209 DIPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY 252 (460)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence 34678999999999999999999977653 4688999973
No 156
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.28 E-value=0.00076 Score=55.61 Aligned_cols=33 Identities=21% Similarity=0.378 Sum_probs=26.9
Q ss_pred EEEEEcCCccCHHHHHHHHHHhc---C--CceEecCCc
Q 045245 135 VVFVMGATATGKTKLSIDLAIHF---S--GEAINSNKI 167 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l---~--~~VIS~Ds~ 167 (251)
++++.||+|+||||++..++..+ + ..++++|.+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~ 39 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTY 39 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCC
Confidence 68899999999999999998865 3 346777864
No 157
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=97.26 E-value=0.0002 Score=61.78 Aligned_cols=32 Identities=25% Similarity=0.370 Sum_probs=29.5
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
+|+|+|..||||||+++.|++ +|..++++|.+
T Consensus 2 iIglTG~igsGKStv~~~l~~-~G~~vidaD~i 33 (180)
T PF01121_consen 2 IIGLTGGIGSGKSTVSKILAE-LGFPVIDADEI 33 (180)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH-CCCCEECccHH
Confidence 789999999999999999988 99999999986
No 158
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=97.26 E-value=0.0013 Score=56.69 Aligned_cols=27 Identities=15% Similarity=0.352 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.....++|.||+|||||+||..++++.
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 445789999999999999999999875
No 159
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.26 E-value=0.00025 Score=54.79 Aligned_cols=26 Identities=27% Similarity=0.506 Sum_probs=20.3
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
+.+.++|.||+|+|||+++..+++.+
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHh
Confidence 45789999999999999999999987
No 160
>PRK06620 hypothetical protein; Validated
Probab=97.26 E-value=0.0012 Score=58.03 Aligned_cols=30 Identities=20% Similarity=0.194 Sum_probs=25.9
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcCCceEe
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFSGEAIN 163 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS 163 (251)
+.++|.||+|+|||+|++.+++..+..+++
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~ 74 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK 74 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEcc
Confidence 679999999999999999999888765544
No 161
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=97.23 E-value=0.00039 Score=59.30 Aligned_cols=88 Identities=17% Similarity=0.136 Sum_probs=51.7
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcCC----ceEecCCcceecc-------cccccCCC-CccccCCCCeEEeccCCCCC-
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFSG----EAINSNKIQVYKG-------LDIATNKV-TASERQGVPHHLLGFVDPEA- 200 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~~----~VIS~Ds~QvYk~-------lsIgTakP-~~eEr~gvpHhLVD~~d~~e- 200 (251)
..+++.||||+|||.+|+.||+.+.. .++..|.-+ |.+ ++-...+| ..-....-.--++|+.|--.
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~-~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~~ 82 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSE-YSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAHP 82 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGG-HCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCSH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhc-ccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhccc
Confidence 57889999999999999999999985 666666543 333 11011111 11111111256777766333
Q ss_pred --ccCHHHHHHHHHHHHHHHHHcC
Q 045245 201 --DYPEEEFCEHALRAIDKIIENG 222 (251)
Q Consensus 201 --~fsag~F~e~A~k~I~eI~~~G 222 (251)
.....-+-+.+.+.+.++++.|
T Consensus 83 ~~~~~~~v~~~~V~~~LL~~le~g 106 (171)
T PF07724_consen 83 SNSGGADVSGEGVQNSLLQLLEGG 106 (171)
T ss_dssp TTTTCSHHHHHHHHHHHHHHHHHS
T ss_pred cccccchhhHHHHHHHHHHHhccc
Confidence 2344555556666666666544
No 162
>PRK13808 adenylate kinase; Provisional
Probab=97.23 E-value=0.00027 Score=67.04 Aligned_cols=33 Identities=12% Similarity=0.310 Sum_probs=30.3
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
.|+|+||+||||||++..|++.|+...|+.|.+
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdl 34 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDM 34 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecccHH
Confidence 488999999999999999999999999998665
No 163
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.22 E-value=0.0015 Score=59.81 Aligned_cols=39 Identities=18% Similarity=0.207 Sum_probs=31.3
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhc-----CCceEecCCc
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHF-----SGEAINSNKI 167 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l-----~~~VIS~Ds~ 167 (251)
...++.+|+|+||+||||||++..|+..+ ...++..|.-
T Consensus 30 ~~~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~ 73 (300)
T TIGR00750 30 YTGNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPS 73 (300)
T ss_pred ccCCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 34567899999999999999999988765 2457888753
No 164
>PRK14529 adenylate kinase; Provisional
Probab=97.21 E-value=0.00029 Score=63.08 Aligned_cols=31 Identities=16% Similarity=0.298 Sum_probs=27.9
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFSGEAINSN 165 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D 165 (251)
.|+|.||+||||||+|+.|+++++...+|..
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~g 32 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHIESG 32 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCcccc
Confidence 4889999999999999999999998888653
No 165
>COG0645 Predicted kinase [General function prediction only]
Probab=97.20 E-value=0.0015 Score=57.13 Aligned_cols=34 Identities=29% Similarity=0.420 Sum_probs=32.0
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
..+++.|-+||||||+|+.|++.+++..|..|..
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~i 35 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVI 35 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEehHHH
Confidence 5788999999999999999999999999999975
No 166
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=97.18 E-value=0.00039 Score=68.48 Aligned_cols=35 Identities=26% Similarity=0.350 Sum_probs=32.2
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
+..|++.||||+|||++|+.||+.++.+.+..|.-
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t 84 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEAT 84 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChheeecch
Confidence 46799999999999999999999999999998874
No 167
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.18 E-value=0.00036 Score=61.59 Aligned_cols=30 Identities=20% Similarity=0.290 Sum_probs=27.4
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcCCceEec
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFSGEAINS 164 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~ 164 (251)
++|+|+|+||+||||++..|+ +++..+++.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l 30 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIEL 30 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCceeeH
Confidence 368999999999999999999 899888876
No 168
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=97.17 E-value=0.00086 Score=58.29 Aligned_cols=72 Identities=18% Similarity=0.322 Sum_probs=46.4
Q ss_pred EcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHHHHHHHHHH
Q 045245 139 MGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHALRAIDKI 218 (251)
Q Consensus 139 sGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~A~k~I~eI 218 (251)
+|.+||||||++.+||++++++.|-.|.++=-.++. |.+ .|+|- .+ =+---|.+....++.+.
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~----KM~----~GiPL--------~D-dDR~pWL~~l~~~~~~~ 63 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIE----KMS----AGIPL--------ND-DDRWPWLEALGDAAASL 63 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHH----HHh----CCCCC--------Cc-chhhHHHHHHHHHHHHh
Confidence 589999999999999999999999999986222111 111 12221 11 13345666666666666
Q ss_pred HHcCCcEEE
Q 045245 219 IENGHLHII 227 (251)
Q Consensus 219 ~~~Gk~PIL 227 (251)
.+.|+.+||
T Consensus 64 ~~~~~~~vi 72 (161)
T COG3265 64 AQKNKHVVI 72 (161)
T ss_pred hcCCCceEE
Confidence 666665554
No 169
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.16 E-value=0.00039 Score=60.28 Aligned_cols=30 Identities=23% Similarity=0.186 Sum_probs=25.9
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
|...++++.|+|++|||||||+++|...+.
T Consensus 2 ~~~~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 2 NKTMIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CCCCceEEEEECCCCChHHHHHHHHHHHHh
Confidence 445667999999999999999999997764
No 170
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=97.16 E-value=0.00035 Score=68.17 Aligned_cols=37 Identities=27% Similarity=0.436 Sum_probs=32.4
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcC-------CceEecCCc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFS-------GEAINSNKI 167 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~-------~~VIS~Ds~ 167 (251)
.++++|+++||||+||||...+||-++. ..+|+.|++
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtY 244 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTY 244 (407)
T ss_pred ccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccc
Confidence 3479999999999999999999988774 469999997
No 171
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.16 E-value=0.00056 Score=62.79 Aligned_cols=25 Identities=24% Similarity=0.475 Sum_probs=23.5
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
++|+++|++||||||+|+.||+.+.
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHH
Confidence 5899999999999999999999885
No 172
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.16 E-value=0.00037 Score=63.61 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=28.6
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcC---CceEecCCc
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFS---GEAINSNKI 167 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~---~~VIS~Ds~ 167 (251)
++.|.|++||||||+++.|+..++ ..+++.|.+
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~ 36 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDY 36 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECccc
Confidence 478999999999999999998874 458999965
No 173
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.16 E-value=0.00046 Score=67.89 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=33.2
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcc
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQ 168 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~Q 168 (251)
.++-|++.||||+|||++|++||+.++.+.+..|...
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~ 82 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATK 82 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecce
Confidence 3467999999999999999999999999999998754
No 174
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.15 E-value=0.00035 Score=67.11 Aligned_cols=30 Identities=20% Similarity=0.390 Sum_probs=26.5
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFSG 159 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~ 159 (251)
..+.++++|.||+|+||||||..|++.++.
T Consensus 75 ~~~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 75 EERKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345689999999999999999999999863
No 175
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=97.15 E-value=0.00054 Score=57.21 Aligned_cols=34 Identities=24% Similarity=0.252 Sum_probs=29.4
Q ss_pred hhccCCCCeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245 126 ITMNFNKKKVVFVMGATATGKTKLSIDLAIHFSG 159 (251)
Q Consensus 126 ~~~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~ 159 (251)
.++.-+.+.+|++.|+.|+||||+++.+++.++.
T Consensus 15 l~~~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~ 48 (133)
T TIGR00150 15 FAKPLDFGTVVLLKGDLGAGKTTLVQGLLQGLGI 48 (133)
T ss_pred HHHhCCCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 3444567789999999999999999999999985
No 176
>PLN02796 D-glycerate 3-kinase
Probab=97.15 E-value=0.00051 Score=65.67 Aligned_cols=38 Identities=18% Similarity=0.253 Sum_probs=32.2
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcC-----CceEecCCcc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFS-----GEAINSNKIQ 168 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds~Q 168 (251)
.++.+|+|+||+|||||||++.|...+. ...|+.|.+.
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY 140 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY 140 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence 4567899999999999999999998875 3578888874
No 177
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=97.15 E-value=0.00037 Score=60.57 Aligned_cols=32 Identities=16% Similarity=0.248 Sum_probs=28.8
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
+|+|+|++||||||++..|++ +|..++++|.+
T Consensus 1 ~i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i 32 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE-LGAFGISADRL 32 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH-CCCEEEecchH
Confidence 478999999999999998865 79999999987
No 178
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=97.14 E-value=0.00037 Score=66.65 Aligned_cols=33 Identities=15% Similarity=0.308 Sum_probs=30.8
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
+.|+|+|+.||||||+++.|++ +|..+|++|.+
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i 34 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVL 34 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHH
Confidence 5799999999999999999987 89999999986
No 179
>PLN02422 dephospho-CoA kinase
Probab=97.10 E-value=0.00046 Score=62.28 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=30.8
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
++|+|+|+.||||||++..|+ ++|..++++|.+
T Consensus 2 ~~igltG~igsGKstv~~~l~-~~g~~~idaD~~ 34 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFK-SSGIPVVDADKV 34 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHH-HCCCeEEehhHH
Confidence 479999999999999999998 689999999987
No 180
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=97.10 E-value=0.0012 Score=57.51 Aligned_cols=31 Identities=32% Similarity=0.368 Sum_probs=27.3
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFSGEAINSN 165 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D 165 (251)
+|+|.|..||||||+++.|++.++.+++..+
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~~e~ 31 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKYFPEA 31 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCeeecc
Confidence 4899999999999999999999987777554
No 181
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=97.09 E-value=0.0034 Score=61.23 Aligned_cols=114 Identities=22% Similarity=0.270 Sum_probs=80.3
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC-----CceEecCCcceecc------cc-cccCCCCccccCCCCeEEeccCC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS-----GEAINSNKIQVYKG------LD-IATNKVTASERQGVPHHLLGFVD 197 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds~QvYk~------ls-IgTakP~~eEr~gvpHhLVD~~d 197 (251)
..+..+++|+||..||||||+.-|+.++. ..+|.+|-=|=--. +. +.+--....|..-..++|++-.+
T Consensus 70 ~~~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDvGQ~ei~pPg~ISL~~~~s~~~~L~~l~~~~~~FvG~is 149 (398)
T COG1341 70 AGKVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADVGQSEIGPPGFISLAFPESPVISLSELEPFTLYFVGSIS 149 (398)
T ss_pred ccCCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCCCCcccCCCceEEeecccCCCCCHHHcCccceEEEeccC
Confidence 45668999999999999999999999874 35777765441100 11 11222236777788899999999
Q ss_pred CCCccCHHHHHHHHHHHHHHHHHcCCcEEE------Ec-ccHHHHHHHHcCCchh
Q 045245 198 PEADYPEEEFCEHALRAIDKIIENGHLHII------VG-GSNTYIEALVEDSIIN 245 (251)
Q Consensus 198 ~~e~fsag~F~e~A~k~I~eI~~~Gk~PIL------VG-GTglYlkaLl~g~~~~ 245 (251)
|+. ..+.++..+.+..+...+.-...|| .| +..-|..++++...|+
T Consensus 150 P~~--~~~~~i~~v~rL~~~a~~~~~~ilIdT~GWi~G~~g~elk~~li~~ikP~ 202 (398)
T COG1341 150 PQG--FPGRYIAGVARLVDLAKKEADFILIDTDGWIKGWGGLELKRALIDAIKPD 202 (398)
T ss_pred CCC--ChHHHHHHHHHHHHHhhccCCEEEEcCCCceeCchHHHHHHHHHhhcCCC
Confidence 988 5688888888888888776444444 57 5556777777766554
No 182
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.09 E-value=0.00071 Score=66.21 Aligned_cols=37 Identities=22% Similarity=0.389 Sum_probs=31.1
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc---C--CceEecCCc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF---S--GEAINSNKI 167 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l---~--~~VIS~Ds~ 167 (251)
.++.+|.++|++||||||++.+||..+ + ..++++|.+
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~ 139 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTF 139 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCccc
Confidence 346899999999999999999999755 3 468899985
No 183
>PRK13973 thymidylate kinase; Provisional
Probab=97.07 E-value=0.00081 Score=58.33 Aligned_cols=25 Identities=20% Similarity=0.224 Sum_probs=24.0
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
++.|+|.|+.||||||+++.|++.+
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l 27 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERL 27 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHH
Confidence 5899999999999999999999998
No 184
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=97.07 E-value=0.00068 Score=57.51 Aligned_cols=27 Identities=15% Similarity=0.345 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..+..++|.||+|||||++|+.+++..
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~ 62 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAA 62 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 556789999999999999999999875
No 185
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.06 E-value=0.00048 Score=59.21 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.9
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcC
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
+|+|+|||||||||++..|+..++
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 789999999999999999988775
No 186
>PF05729 NACHT: NACHT domain
Probab=97.06 E-value=0.00051 Score=54.23 Aligned_cols=25 Identities=28% Similarity=0.562 Sum_probs=22.4
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
++++|.|++|+|||+++..++..+.
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~ 25 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLA 25 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHH
Confidence 4789999999999999999998763
No 187
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.05 E-value=0.00082 Score=60.06 Aligned_cols=30 Identities=20% Similarity=0.227 Sum_probs=25.7
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcCCce
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEA 161 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~V 161 (251)
.+..++|.||+|+|||++|+.+|++++..+
T Consensus 29 ~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~ 58 (305)
T TIGR00635 29 ALDHLLLYGPPGLGKTTLAHIIANEMGVNL 58 (305)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 345689999999999999999999987543
No 188
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.04 E-value=0.00064 Score=60.93 Aligned_cols=31 Identities=26% Similarity=0.326 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcCCceE
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAI 162 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VI 162 (251)
.+..++|.||+|+|||++|+.||+.++.+++
T Consensus 20 ~g~~vLL~G~~GtGKT~lA~~la~~lg~~~~ 50 (262)
T TIGR02640 20 SGYPVHLRGPAGTGKTTLAMHVARKRDRPVM 50 (262)
T ss_pred cCCeEEEEcCCCCCHHHHHHHHHHHhCCCEE
Confidence 3567889999999999999999998886654
No 189
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.03 E-value=0.0024 Score=56.41 Aligned_cols=28 Identities=25% Similarity=0.462 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
+....|+|+|++||||||++.++++.+.
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 3457899999999999999999998774
No 190
>PRK10867 signal recognition particle protein; Provisional
Probab=97.03 E-value=0.0019 Score=63.21 Aligned_cols=37 Identities=19% Similarity=0.239 Sum_probs=29.6
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc----C--CceEecCCc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF----S--GEAINSNKI 167 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l----~--~~VIS~Ds~ 167 (251)
.++.+|+++||+||||||++.+||..+ + ..++.+|.+
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~ 140 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVY 140 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcccc
Confidence 456899999999999999888887643 3 458889974
No 191
>PRK04195 replication factor C large subunit; Provisional
Probab=97.01 E-value=0.00085 Score=65.16 Aligned_cols=33 Identities=36% Similarity=0.508 Sum_probs=29.4
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSN 165 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D 165 (251)
++.++|+||+|+||||+|..||++++..++..+
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~~~ieln 71 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGWEVIELN 71 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEc
Confidence 678999999999999999999999997766554
No 192
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=97.00 E-value=0.00021 Score=59.06 Aligned_cols=71 Identities=24% Similarity=0.333 Sum_probs=43.8
Q ss_pred CccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHHHHHHHHHHHHc
Q 045245 142 TATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHALRAIDKIIEN 221 (251)
Q Consensus 142 TGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~A~k~I~eI~~~ 221 (251)
+||||||+++.||++++.+.+..|..- ++..+ .+..++........|.+.-.+.+.++...
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i--------------~~~~g-----~si~~i~~~~G~~~fr~~E~~~l~~l~~~ 61 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEI--------------EERTG-----MSISEIFAEEGEEAFRELESEALRELLKE 61 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHH--------------HHHHT-----SHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHH--------------HHHhC-----CcHHHHHHcCChHHHHHHHHHHHHHHhcc
Confidence 599999999999999999999998752 11111 11111111222445555556778887776
Q ss_pred CCcEEEEccc
Q 045245 222 GHLHIIVGGS 231 (251)
Q Consensus 222 Gk~PILVGGT 231 (251)
...+|-+||.
T Consensus 62 ~~~VIa~GGG 71 (158)
T PF01202_consen 62 NNCVIACGGG 71 (158)
T ss_dssp SSEEEEE-TT
T ss_pred CcEEEeCCCC
Confidence 6555557554
No 193
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.00 E-value=0.00075 Score=65.06 Aligned_cols=37 Identities=30% Similarity=0.386 Sum_probs=31.0
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcC---------CceEecCCc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFS---------GEAINSNKI 167 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~---------~~VIS~Ds~ 167 (251)
.++.+++++||||+||||.+.+||..+. ..++++|.+
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~ 217 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNY 217 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCc
Confidence 4567999999999999999999997652 458999985
No 194
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=96.99 E-value=0.00059 Score=55.24 Aligned_cols=30 Identities=20% Similarity=0.309 Sum_probs=19.6
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
...+++.++|.|++|+|||+|.+++.+...
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~ 49 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLLRALLDRLA 49 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHHHHHHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 335568999999999999999998887664
No 195
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.99 E-value=0.00072 Score=65.46 Aligned_cols=35 Identities=26% Similarity=0.308 Sum_probs=30.2
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
..-++|.||||+|||++|+.||+.++.+.+..|.-
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~ 142 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARILDVPFAIADAT 142 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCceecchh
Confidence 35689999999999999999999999877766654
No 196
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.99 E-value=0.0025 Score=56.03 Aligned_cols=96 Identities=15% Similarity=0.210 Sum_probs=58.7
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhc-----CCceEecCCcceecccccc--cCCC--CccccCCCCeEEeccCCCCCcc
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHF-----SGEAINSNKIQVYKGLDIA--TNKV--TASERQGVPHHLLGFVDPEADY 202 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l-----~~~VIS~Ds~QvYk~lsIg--TakP--~~eEr~gvpHhLVD~~d~~e~f 202 (251)
....++|.||+|+|||.|..+++.++ +..++..+.-+..+++.-. ..+. =.++....+--++|-.+.-.
T Consensus 33 ~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~-- 110 (219)
T PF00308_consen 33 RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLA-- 110 (219)
T ss_dssp SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGT--
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhc--
Confidence 34578999999999999999998754 2334444332222221100 0000 01345566777887664432
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcEEEEc
Q 045245 203 PEEEFCEHALRAIDKIIENGHLHIIVG 229 (251)
Q Consensus 203 sag~F~e~A~k~I~eI~~~Gk~PILVG 229 (251)
....+.+.....++...++|+..|+.+
T Consensus 111 ~~~~~q~~lf~l~n~~~~~~k~li~ts 137 (219)
T PF00308_consen 111 GKQRTQEELFHLFNRLIESGKQLILTS 137 (219)
T ss_dssp THHHHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CchHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 345567777788899989988777765
No 197
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.99 E-value=0.00083 Score=66.95 Aligned_cols=33 Identities=24% Similarity=0.329 Sum_probs=28.5
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEe
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAIN 163 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS 163 (251)
...++++++||+|+||||.++.||++++..++.
T Consensus 43 ~~~~iLlLtGP~G~GKtttv~~La~elg~~v~E 75 (519)
T PF03215_consen 43 SPKRILLLTGPSGCGKTTTVKVLAKELGFEVQE 75 (519)
T ss_pred CCcceEEEECCCCCCHHHHHHHHHHHhCCeeEE
Confidence 445799999999999999999999999865554
No 198
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=96.97 E-value=0.00062 Score=71.62 Aligned_cols=39 Identities=18% Similarity=0.432 Sum_probs=35.0
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceeccc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGL 173 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~l 173 (251)
..+|+|.||+||||||+|+.||++++...++.+.+ ||.+
T Consensus 34 ~~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~--yRa~ 72 (863)
T PRK12269 34 TVIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSF--YRAF 72 (863)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHH--HHHH
Confidence 37899999999999999999999999999998886 6654
No 199
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.97 E-value=0.00073 Score=57.22 Aligned_cols=28 Identities=29% Similarity=0.443 Sum_probs=24.8
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..+..++|+|||||||||+++.|....+
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4568999999999999999999988765
No 200
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.95 E-value=0.0009 Score=63.59 Aligned_cols=36 Identities=28% Similarity=0.267 Sum_probs=30.3
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNK 166 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds 166 (251)
+.++-++|.||+|+|||++|+.+|++.+...+..+.
T Consensus 163 ~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~ 198 (389)
T PRK03992 163 EPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVG 198 (389)
T ss_pred CCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeeh
Confidence 556779999999999999999999999876665543
No 201
>PRK05642 DNA replication initiation factor; Validated
Probab=96.94 E-value=0.0017 Score=57.41 Aligned_cols=89 Identities=11% Similarity=0.214 Sum_probs=51.1
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhc---C--CceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHH
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHF---S--GEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEF 207 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l---~--~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F 207 (251)
...++|.||+|+|||.|+.+++.++ + ...++++.+. ... ..-.+.....+.-++|..+... ...++
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~--~~~-----~~~~~~~~~~d~LiiDDi~~~~--~~~~~ 115 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELL--DRG-----PELLDNLEQYELVCLDDLDVIA--GKADW 115 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHH--hhh-----HHHHHhhhhCCEEEEechhhhc--CChHH
Confidence 4678999999999999999998643 2 2344443321 000 0001123344566677665332 11344
Q ss_pred HHHHHHHHHHHHHcCCcEEEEccc
Q 045245 208 CEHALRAIDKIIENGHLHIIVGGS 231 (251)
Q Consensus 208 ~e~A~k~I~eI~~~Gk~PILVGGT 231 (251)
.+.....++...++|+. ||++++
T Consensus 116 ~~~Lf~l~n~~~~~g~~-ilits~ 138 (234)
T PRK05642 116 EEALFHLFNRLRDSGRR-LLLAAS 138 (234)
T ss_pred HHHHHHHHHHHHhcCCE-EEEeCC
Confidence 55566777777666664 555554
No 202
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.94 E-value=0.00076 Score=61.48 Aligned_cols=37 Identities=27% Similarity=0.390 Sum_probs=30.2
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc----C---CceEecCCc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF----S---GEAINSNKI 167 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l----~---~~VIS~Ds~ 167 (251)
.++.+++|+|||||||||++.+||..+ + ..+|..|.+
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~ 235 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTY 235 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCcc
Confidence 457899999999999999999998754 2 347888874
No 203
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.93 E-value=0.00086 Score=57.42 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
++.+|.|+|.+||||||||++|.+++.
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~ 27 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLF 27 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457899999999999999999999873
No 204
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.93 E-value=0.0011 Score=61.66 Aligned_cols=35 Identities=29% Similarity=0.285 Sum_probs=29.6
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSN 165 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D 165 (251)
..++-++|.||+|+|||++|+.++++++...+..+
T Consensus 154 ~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~ 188 (364)
T TIGR01242 154 EPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV 188 (364)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecc
Confidence 34567999999999999999999999987766554
No 205
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.93 E-value=0.00055 Score=67.13 Aligned_cols=29 Identities=24% Similarity=0.217 Sum_probs=25.2
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcCCceE
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFSGEAI 162 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VI 162 (251)
.-.++.||+|+||||||+.||+..+..+.
T Consensus 49 ~SmIl~GPPG~GKTTlA~liA~~~~~~f~ 77 (436)
T COG2256 49 HSMILWGPPGTGKTTLARLIAGTTNAAFE 77 (436)
T ss_pred ceeEEECCCCCCHHHHHHHHHHhhCCceE
Confidence 46789999999999999999999986543
No 206
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.93 E-value=0.0056 Score=55.50 Aligned_cols=26 Identities=23% Similarity=0.383 Sum_probs=23.0
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..+++|+|||||||||+...+....+
T Consensus 80 ~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 80 HGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 45899999999999999999987764
No 207
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.92 E-value=0.00094 Score=64.28 Aligned_cols=32 Identities=25% Similarity=0.332 Sum_probs=27.5
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceE
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAI 162 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VI 162 (251)
.-.+.|+|+|++|||||||+.+|++.+|...+
T Consensus 217 ~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v 248 (399)
T PRK08099 217 FFVRTVAILGGESSGKSTLVNKLANIFNTTSA 248 (399)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence 34578999999999999999999999986543
No 208
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.92 E-value=0.0011 Score=60.94 Aligned_cols=32 Identities=22% Similarity=0.212 Sum_probs=27.2
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceE
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAI 162 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VI 162 (251)
..+..++|.||+|+|||++|+.+|+.++..+.
T Consensus 49 ~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~ 80 (328)
T PRK00080 49 EALDHVLLYGPPGLGKTTLANIIANEMGVNIR 80 (328)
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence 34567899999999999999999999986543
No 209
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.92 E-value=0.00089 Score=58.25 Aligned_cols=27 Identities=22% Similarity=0.450 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.+..++|.||+|+||||+++.+++.+.
T Consensus 42 ~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 42 REGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 355899999999999999999999876
No 210
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.91 E-value=0.00097 Score=62.34 Aligned_cols=37 Identities=24% Similarity=0.289 Sum_probs=30.3
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcC-----CceEecCCc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFS-----GEAINSNKI 167 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds~ 167 (251)
.++.+++++||+|+||||++..||..+. ..++.+|.+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~ 153 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTF 153 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCcc
Confidence 4568999999999999999999988662 346777874
No 211
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=96.90 E-value=0.0011 Score=64.42 Aligned_cols=41 Identities=20% Similarity=0.363 Sum_probs=27.8
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC--CceEecCCccee
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS--GEAINSNKIQVY 170 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~--~~VIS~Ds~QvY 170 (251)
...++.|+|.||||+|||+||..+|++++ .+.++...-.+|
T Consensus 47 K~aGr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiy 89 (398)
T PF06068_consen 47 KIAGRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIY 89 (398)
T ss_dssp --TT-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-
T ss_pred cccCcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceee
Confidence 34579999999999999999999999997 344444333444
No 212
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.90 E-value=0.001 Score=54.99 Aligned_cols=34 Identities=21% Similarity=0.280 Sum_probs=28.5
Q ss_pred hhccCCCCeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245 126 ITMNFNKKKVVFVMGATATGKTKLSIDLAIHFSG 159 (251)
Q Consensus 126 ~~~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~ 159 (251)
+++.-+.+.+|++.|+-|||||||++.+++.++.
T Consensus 8 l~~~l~~g~vi~L~GdLGaGKTtf~r~l~~~lg~ 41 (123)
T PF02367_consen 8 LAQILKPGDVILLSGDLGAGKTTFVRGLARALGI 41 (123)
T ss_dssp HHHHHSS-EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred HHHhCCCCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4445577899999999999999999999999975
No 213
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=96.90 E-value=0.00088 Score=58.72 Aligned_cols=32 Identities=31% Similarity=0.358 Sum_probs=29.1
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcCCceEec
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINS 164 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~ 164 (251)
.+-|+|.|.||+||||++.+||++++.+-|+.
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~i 38 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIEI 38 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEeh
Confidence 35689999999999999999999999988876
No 214
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.89 E-value=0.0037 Score=61.05 Aligned_cols=37 Identities=19% Similarity=0.244 Sum_probs=30.0
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc----C--CceEecCCc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF----S--GEAINSNKI 167 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l----~--~~VIS~Ds~ 167 (251)
.++.+++++||+||||||++..||..+ + ..++.+|.+
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~ 139 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLY 139 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 346799999999999999999988763 2 458888874
No 215
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.88 E-value=0.0044 Score=55.41 Aligned_cols=33 Identities=18% Similarity=0.310 Sum_probs=28.4
Q ss_pred hhccCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 126 ITMNFNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 126 ~~~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++..++.+|-++|.|||||||||.+|.+++-
T Consensus 16 ~~~~~~~~~viW~TGLSGsGKSTiA~ale~~L~ 48 (197)
T COG0529 16 EALKGQKGAVIWFTGLSGSGKSTIANALEEKLF 48 (197)
T ss_pred HHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHH
Confidence 345667778999999999999999999999873
No 216
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=96.88 E-value=0.00083 Score=56.21 Aligned_cols=28 Identities=36% Similarity=0.558 Sum_probs=23.6
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcCCceE
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFSGEAI 162 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~~~VI 162 (251)
.|+|.|+.||||||+++.|++.++..++
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~ 28 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGYEVV 28 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCccc
Confidence 4789999999999999999998754333
No 217
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.88 E-value=0.0011 Score=65.67 Aligned_cols=42 Identities=12% Similarity=0.231 Sum_probs=35.3
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCccee
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVY 170 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvY 170 (251)
..+.++-|++.||+|+|||.+|+.+|.+.+.+++..|.-.++
T Consensus 255 gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~ 296 (489)
T CHL00195 255 GLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLF 296 (489)
T ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhc
Confidence 346678899999999999999999999999988887754333
No 218
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=96.87 E-value=0.00069 Score=53.17 Aligned_cols=29 Identities=24% Similarity=0.379 Sum_probs=25.4
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.+++.+++|+|++|||||||.+.|+....
T Consensus 8 i~~g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 8 IKPGEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred EcCCCEEEEEccCCCccccceeeeccccc
Confidence 36678999999999999999999988764
No 219
>PTZ00202 tuzin; Provisional
Probab=96.87 E-value=0.0014 Score=65.76 Aligned_cols=80 Identities=11% Similarity=0.138 Sum_probs=53.1
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHHHH
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHAL 212 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~A~ 212 (251)
+++++|.|++|+||||+++.+....+.. |+|-+.. + ++|. -..+++.+........++..+...
T Consensus 286 privvLtG~~G~GKTTLlR~~~~~l~~~-------qL~vNpr-g-----~eEl---Lr~LL~ALGV~p~~~k~dLLrqIq 349 (550)
T PTZ00202 286 PRIVVFTGFRGCGKSSLCRSAVRKEGMP-------AVFVDVR-G-----TEDT---LRSVVKALGVPNVEACGDLLDFIS 349 (550)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcCCce-------EEEECCC-C-----HHHH---HHHHHHHcCCCCcccHHHHHHHHH
Confidence 4699999999999999999999888733 4444443 2 1221 112344444444455566666677
Q ss_pred HHHHHHHHc-CCcEEEE
Q 045245 213 RAIDKIIEN-GHLHIIV 228 (251)
Q Consensus 213 k~I~eI~~~-Gk~PILV 228 (251)
+.+.+.... |+.|+|+
T Consensus 350 eaLl~~~~e~GrtPVLI 366 (550)
T PTZ00202 350 EACRRAKKMNGETPLLV 366 (550)
T ss_pred HHHHHHHHhCCCCEEEE
Confidence 777776666 9999984
No 220
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.001 Score=64.32 Aligned_cols=33 Identities=24% Similarity=0.300 Sum_probs=29.2
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
-|++.||||||||-||+.||+.++.+.-=+|+-
T Consensus 99 NILLiGPTGsGKTlLAqTLAk~LnVPFaiADAT 131 (408)
T COG1219 99 NILLIGPTGSGKTLLAQTLAKILNVPFAIADAT 131 (408)
T ss_pred cEEEECCCCCcHHHHHHHHHHHhCCCeeecccc
Confidence 488999999999999999999999887777764
No 221
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=96.87 E-value=0.0021 Score=54.57 Aligned_cols=30 Identities=10% Similarity=0.150 Sum_probs=24.3
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcCCceEec
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFSGEAINS 164 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~ 164 (251)
+|.|++..|||++++|++||+++|.+.+.-
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d~ 30 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYDR 30 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE-H
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCCH
Confidence 689999999999999999999999888754
No 222
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=96.85 E-value=0.0035 Score=58.61 Aligned_cols=26 Identities=19% Similarity=0.364 Sum_probs=23.2
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
...++|+|||||||||+...|....+
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 47899999999999999999988664
No 223
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.84 E-value=0.0012 Score=64.13 Aligned_cols=34 Identities=26% Similarity=0.327 Sum_probs=28.7
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNK 166 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds 166 (251)
+..++|.||||+|||++|+.||+.++.+....|.
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da 149 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILNVPFAIADA 149 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcCCCeEEech
Confidence 3579999999999999999999999876655554
No 224
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.84 E-value=0.0013 Score=60.11 Aligned_cols=37 Identities=24% Similarity=0.326 Sum_probs=29.8
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc---C--CceEecCCc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF---S--GEAINSNKI 167 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l---~--~~VIS~Ds~ 167 (251)
.++++++++||+|+||||++.+||..+ + ..++.+|.+
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~ 111 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTF 111 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCC
Confidence 445789999999999999999998766 2 347888863
No 225
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.84 E-value=0.0025 Score=61.12 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
+...++|+|||||||||+...|.+.++
T Consensus 148 ~~GlilI~G~TGSGKTT~l~al~~~i~ 174 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLAASIYQHCG 174 (372)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345789999999999999999988763
No 226
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.83 E-value=0.00086 Score=52.21 Aligned_cols=23 Identities=39% Similarity=0.810 Sum_probs=20.5
Q ss_pred EEEEEcCCccCHHHHHHHHHHhc
Q 045245 135 VVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l 157 (251)
+++|.||+|+|||+++..++...
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH
Confidence 36899999999999999998776
No 227
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=96.82 E-value=0.001 Score=66.71 Aligned_cols=40 Identities=15% Similarity=0.343 Sum_probs=31.9
Q ss_pred ccCCCCeEEEEEcCCccCHHHHHHHHHHhcCC------ceEecCCc
Q 045245 128 MNFNKKKVVFVMGATATGKTKLSIDLAIHFSG------EAINSNKI 167 (251)
Q Consensus 128 ~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~------~VIS~Ds~ 167 (251)
....++.+|+|+|++||||||+|+.|+++++. .++..|.+
T Consensus 387 ~r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~v 432 (568)
T PRK05537 387 PRHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVV 432 (568)
T ss_pred cccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHH
Confidence 44455679999999999999999999999985 55555543
No 228
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=96.81 E-value=0.0011 Score=56.53 Aligned_cols=39 Identities=18% Similarity=0.392 Sum_probs=31.4
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKG 172 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~ 172 (251)
++-++|.||+|+||||+|..|.++ +..+++=|...+.+.
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~-g~~lvaDD~v~v~~~ 52 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR-GHRLVADDRVVVKRE 52 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeEEECCEEEEEEE
Confidence 467999999999999999999875 567777776665543
No 229
>PHA00729 NTP-binding motif containing protein
Probab=96.81 E-value=0.00088 Score=60.59 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=23.0
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..|+|+|+||+|||+||.+|+++++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999875
No 230
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=96.80 E-value=0.0029 Score=59.30 Aligned_cols=69 Identities=12% Similarity=0.119 Sum_probs=53.4
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC-------CceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCcc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS-------GEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADY 202 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~-------~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~f 202 (251)
...+-+|.|.|+.|+||||+|+.|+..+. ..+|..|.+..+... ++ ++.+.++..+.+.|
T Consensus 79 ~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFhy~n~~-----------L~--~~glm~rKGfPeSy 145 (283)
T COG1072 79 QQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAV-----------LD--ERGLMARKGFPESY 145 (283)
T ss_pred CCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccccCHhH-----------hh--hccccccCCCCccc
Confidence 45668899999999999999999988763 468999998643321 11 45688889999999
Q ss_pred CHHHHHHHH
Q 045245 203 PEEEFCEHA 211 (251)
Q Consensus 203 sag~F~e~A 211 (251)
++..|.+-.
T Consensus 146 D~~~ll~fl 154 (283)
T COG1072 146 DVAALLRFL 154 (283)
T ss_pred cHHHHHHHH
Confidence 988887644
No 231
>PRK04296 thymidine kinase; Provisional
Probab=96.79 E-value=0.008 Score=51.50 Aligned_cols=25 Identities=28% Similarity=0.510 Sum_probs=22.6
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
+.+++++||+|+||||++..++.++
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999998876
No 232
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.78 E-value=0.0014 Score=64.13 Aligned_cols=43 Identities=14% Similarity=0.058 Sum_probs=36.5
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceec
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYK 171 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk 171 (251)
+...|+.++|.||+|+|||.+|+.+|++++...|..+.=.++.
T Consensus 144 ~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~s 186 (413)
T PLN00020 144 NIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELES 186 (413)
T ss_pred CCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhc
Confidence 4577899999999999999999999999998877776655443
No 233
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.78 E-value=0.0047 Score=58.49 Aligned_cols=38 Identities=13% Similarity=0.217 Sum_probs=30.8
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcC-----CceEecCCcc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFS-----GEAINSNKIQ 168 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds~Q 168 (251)
.++.+|.|+||+|||||||+..|...+. ..+++.|--.
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s 96 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSS 96 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCc
Confidence 5678999999999999999999877653 4688888644
No 234
>PRK06851 hypothetical protein; Provisional
Probab=96.77 E-value=0.0033 Score=60.49 Aligned_cols=27 Identities=22% Similarity=0.479 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
...++++|.|++|+||||+.+++++.+
T Consensus 28 ~~~~~~il~G~pGtGKStl~~~i~~~~ 54 (367)
T PRK06851 28 GANRIFILKGGPGTGKSTLMKKIGEEF 54 (367)
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHHH
Confidence 345899999999999999999998877
No 235
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=96.77 E-value=0.0013 Score=49.92 Aligned_cols=24 Identities=29% Similarity=0.277 Sum_probs=20.9
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcC
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.|+|.|++|||||||.+.|.....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS-
T ss_pred CEEEECcCCCCHHHHHHHHhcCCC
Confidence 489999999999999999997654
No 236
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=96.76 E-value=0.0013 Score=50.65 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.3
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHh
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
...|++.|++|+|||||...+...
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~ 26 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQ 26 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 367999999999999999999754
No 237
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.76 E-value=0.0027 Score=64.85 Aligned_cols=99 Identities=14% Similarity=0.249 Sum_probs=62.0
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCcc-----ccCCCCe-EEeccCCCCC-c--
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTAS-----ERQGVPH-HLLGFVDPEA-D-- 201 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~e-----Er~gvpH-hLVD~~d~~e-~-- 201 (251)
.-||=|+++||+|+|||-||+++|-+-+.+...+-.-+ |.++=+|-++-+.- .+...|. .|+|+.|.-. .
T Consensus 335 KLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSE-FdEm~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~ 413 (752)
T KOG0734|consen 335 KLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSE-FDEMFVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRN 413 (752)
T ss_pred cCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccc-hhhhhhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCC
Confidence 44678999999999999999999999887766653222 34443443333322 2234455 7899887432 2
Q ss_pred cCHHHHHHHHHHHHHHHHH------cCCcEEEEcccHH
Q 045245 202 YPEEEFCEHALRAIDKIIE------NGHLHIIVGGSNT 233 (251)
Q Consensus 202 fsag~F~e~A~k~I~eI~~------~Gk~PILVGGTgl 233 (251)
=+..+|. ++.|++++- ++...|+.|+|++
T Consensus 414 ~~~~~y~---kqTlNQLLvEmDGF~qNeGiIvigATNf 448 (752)
T KOG0734|consen 414 PSDQHYA---KQTLNQLLVEMDGFKQNEGIIVIGATNF 448 (752)
T ss_pred ccHHHHH---HHHHHHHHHHhcCcCcCCceEEEeccCC
Confidence 2233354 444554432 5566777888875
No 238
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=96.75 E-value=0.0013 Score=56.00 Aligned_cols=29 Identities=24% Similarity=0.250 Sum_probs=25.5
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.+++.+++|.||+|||||||++.|+-.+.
T Consensus 27 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 27 IEKGEFVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred EcCCCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence 36778999999999999999999987653
No 239
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.74 E-value=0.0098 Score=53.38 Aligned_cols=32 Identities=19% Similarity=0.180 Sum_probs=25.7
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNK 166 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds 166 (251)
++.++|.|++|+||||+|+.|+. ...+++.|.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~--~~~~~~~d~ 43 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG--KTLVLSFDM 43 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC--CCEEEeccc
Confidence 57799999999999999999963 245666665
No 240
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.73 E-value=0.0013 Score=58.25 Aligned_cols=29 Identities=24% Similarity=0.327 Sum_probs=25.7
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSG 159 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~ 159 (251)
.....++|+|||||||||+...|.+..+.
T Consensus 125 ~~~~~ili~G~tGSGKTT~l~all~~i~~ 153 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLLNALLEEIPP 153 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHHHHHHHHCHT
T ss_pred ccceEEEEECCCccccchHHHHHhhhccc
Confidence 45689999999999999999999998753
No 241
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.73 E-value=0.0013 Score=64.73 Aligned_cols=37 Identities=32% Similarity=0.517 Sum_probs=30.1
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc----C--CceEecCCc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF----S--GEAINSNKI 167 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l----~--~~VIS~Ds~ 167 (251)
.++++++|+|||||||||++.+||..+ + ..++.+|.+
T Consensus 221 ~~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~ 263 (432)
T PRK12724 221 NQRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNY 263 (432)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccch
Confidence 346789999999999999999999754 2 457888874
No 242
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.73 E-value=0.0011 Score=64.13 Aligned_cols=27 Identities=33% Similarity=0.505 Sum_probs=24.8
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
-.++|++.||+|+|||+|+++||+++.
T Consensus 176 ~NRliLlhGPPGTGKTSLCKaLaQkLS 202 (423)
T KOG0744|consen 176 WNRLILLHGPPGTGKTSLCKALAQKLS 202 (423)
T ss_pred eeeEEEEeCCCCCChhHHHHHHHHhhe
Confidence 357999999999999999999999985
No 243
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.72 E-value=0.0014 Score=55.53 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=25.3
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++.+++|.||+|+|||||++.|+-.+.
T Consensus 24 i~~G~~~~l~G~nGsGKSTLl~~l~G~~~ 52 (211)
T cd03225 24 IKKGEFVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36778999999999999999999987653
No 244
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.72 E-value=0.0018 Score=63.01 Aligned_cols=36 Identities=25% Similarity=0.203 Sum_probs=30.7
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNK 166 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds 166 (251)
..++-+++.||+|+|||++|+.+|...+..++..+.
T Consensus 86 ~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~ 121 (495)
T TIGR01241 86 KIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISG 121 (495)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccH
Confidence 445669999999999999999999999888776653
No 245
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=96.71 E-value=0.0014 Score=55.86 Aligned_cols=29 Identities=21% Similarity=0.288 Sum_probs=25.4
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++.+++|.||+|||||||++.|+-.+.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 26 ITKGEMVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36778999999999999999999997653
No 246
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.70 E-value=0.0017 Score=63.97 Aligned_cols=37 Identities=22% Similarity=0.339 Sum_probs=30.8
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcC-----CceEecCCc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFS-----GEAINSNKI 167 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds~ 167 (251)
.++++|+|+||+|+||||++.+||..+- ..++.+|.+
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~ 280 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHS 280 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCc
Confidence 3457999999999999999999987652 458899986
No 247
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.0021 Score=66.75 Aligned_cols=54 Identities=24% Similarity=0.312 Sum_probs=36.7
Q ss_pred cccCccchhhhccchhhhhh-ccCCCCeEEEEEcCCccCHHHHHHHHHHhcCCce
Q 045245 108 DHRGKSNFISKNLVYTRVIT-MNFNKKKVVFVMGATATGKTKLSIDLAIHFSGEA 161 (251)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~-~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~V 161 (251)
||-|=.-+=++++.+--+.. ++.-++++++++||+|+|||+|++.+|+.++-+.
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkf 378 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKF 378 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCE
Confidence 44443333244444333322 4556678999999999999999999999998543
No 248
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=96.69 E-value=0.0015 Score=55.35 Aligned_cols=29 Identities=21% Similarity=0.290 Sum_probs=25.4
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++.+++|.||+|||||||++.|+-.+.
T Consensus 24 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 52 (214)
T cd03292 24 ISAGEFVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36778999999999999999999997653
No 249
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=96.68 E-value=0.0016 Score=54.64 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=25.2
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++.+++|.||+|||||||.+.|+-...
T Consensus 15 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 43 (190)
T TIGR01166 15 AERGEVLALLGANGAGKSTLLLHLNGLLR 43 (190)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36778999999999999999999987653
No 250
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=96.67 E-value=0.0016 Score=55.35 Aligned_cols=29 Identities=28% Similarity=0.374 Sum_probs=25.2
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++.+++|.||+|||||||++.|+..+.
T Consensus 25 i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (214)
T TIGR02673 25 IRKGEFLFLTGPSGAGKTTLLKLLYGALT 53 (214)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36678999999999999999999987653
No 251
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.67 E-value=0.0016 Score=55.26 Aligned_cols=29 Identities=17% Similarity=0.153 Sum_probs=25.3
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++.+++|.||+|||||||++.|+-.+.
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 23 VEKGEIFGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36778999999999999999999997653
No 252
>PF13245 AAA_19: Part of AAA domain
Probab=96.67 E-value=0.0019 Score=48.67 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=19.1
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
...+++|.||+|||||+++..++..+
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 45678899999999996555554433
No 253
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.67 E-value=0.0023 Score=61.65 Aligned_cols=36 Identities=28% Similarity=0.358 Sum_probs=30.6
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSN 165 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D 165 (251)
.+.++-++|.||+|+|||++|+.+|...+...+...
T Consensus 176 l~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~ 211 (398)
T PTZ00454 176 IDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVV 211 (398)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEe
Confidence 356788999999999999999999999987766543
No 254
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.67 E-value=0.002 Score=60.11 Aligned_cols=31 Identities=32% Similarity=0.412 Sum_probs=27.5
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcCCceEe
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFSGEAIN 163 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS 163 (251)
.+.|+|+|++|+|||||++.|++.++...+.
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~ 192 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAW 192 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEe
Confidence 4689999999999999999999998876644
No 255
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.66 E-value=0.0018 Score=61.56 Aligned_cols=31 Identities=23% Similarity=0.286 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcCCceE
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAI 162 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VI 162 (251)
..+.|+|.||+|+|||++++.||++++.+++
T Consensus 63 ~~~~ilL~G~pGtGKTtla~~lA~~l~~~~~ 93 (327)
T TIGR01650 63 YDRRVMVQGYHGTGKSTHIEQIAARLNWPCV 93 (327)
T ss_pred cCCcEEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence 3567999999999999999999999997655
No 256
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=96.66 E-value=0.002 Score=52.18 Aligned_cols=24 Identities=33% Similarity=0.537 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHH
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLA 154 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LA 154 (251)
..+..++|.||||||||||++.+.
T Consensus 13 ~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 13 YGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred cCCEEEEEEcCCCCCHHHHHHHhh
Confidence 445789999999999999999987
No 257
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.66 E-value=0.0017 Score=62.53 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=31.2
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc----C---CceEecCCc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF----S---GEAINSNKI 167 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l----~---~~VIS~Ds~ 167 (251)
..++.+++++||||+||||++.+||..+ + ..++..|.+
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~ 178 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSY 178 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccc
Confidence 3567899999999999999999998753 3 347888886
No 258
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.65 E-value=0.0017 Score=56.08 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=24.8
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..++.+++|.||+|||||||++.|+-.+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 24 INPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3677899999999999999999998654
No 259
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.65 E-value=0.0017 Score=55.26 Aligned_cols=29 Identities=21% Similarity=0.182 Sum_probs=25.2
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++.+++|.||+|||||||++.|+-.+.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03259 23 VEPGEFLALLGPSGCGKTTLLRLIAGLER 51 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36778999999999999999999987553
No 260
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=96.65 E-value=0.0017 Score=56.25 Aligned_cols=28 Identities=21% Similarity=0.318 Sum_probs=24.9
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..++.+++|.||+|||||||++.|+-.+
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 25 INPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4677899999999999999999998755
No 261
>PHA02624 large T antigen; Provisional
Probab=96.64 E-value=0.0023 Score=65.55 Aligned_cols=40 Identities=28% Similarity=0.402 Sum_probs=36.0
Q ss_pred hhhccCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEec
Q 045245 125 VITMNFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINS 164 (251)
Q Consensus 125 ~~~~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~ 164 (251)
...++.|+++.+++.||+|||||+++..|++.+++.++|+
T Consensus 423 ~~l~giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsV 462 (647)
T PHA02624 423 LIVENVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNV 462 (647)
T ss_pred HHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEe
Confidence 3557889999999999999999999999999998887776
No 262
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.64 E-value=0.0062 Score=57.11 Aligned_cols=26 Identities=27% Similarity=0.473 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.++.++|+|+|||||||++++|+...
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhh
Confidence 56789999999999999999999864
No 263
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.64 E-value=0.0023 Score=57.50 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=26.7
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceE
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAI 162 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VI 162 (251)
..+..+++.||+|+|||++|+.++++++..++
T Consensus 41 ~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~ 72 (316)
T PHA02544 41 RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVL 72 (316)
T ss_pred CCCeEEEeeCcCCCCHHHHHHHHHHHhCccce
Confidence 44578888999999999999999998875443
No 264
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=96.64 E-value=0.0016 Score=55.47 Aligned_cols=28 Identities=14% Similarity=0.255 Sum_probs=25.0
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..++.+++|.||+|||||||++.|+-.+
T Consensus 22 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 22 VKPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3677899999999999999999998765
No 265
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=96.64 E-value=0.0016 Score=55.42 Aligned_cols=29 Identities=21% Similarity=0.314 Sum_probs=25.3
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++.+++|.||+|||||||++.|+-.+.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (222)
T cd03224 23 VPEGEIVALLGRNGAGKTTLLKTIMGLLP 51 (222)
T ss_pred EcCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46778999999999999999999987653
No 266
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.64 E-value=0.0017 Score=56.15 Aligned_cols=29 Identities=14% Similarity=0.312 Sum_probs=25.5
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++.+++|.||+|||||||++.|+-.+.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (235)
T cd03261 23 VRRGEILAIIGPSGSGKSTLLRLIVGLLR 51 (235)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46778999999999999999999997653
No 267
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.63 E-value=0.0017 Score=56.02 Aligned_cols=30 Identities=17% Similarity=0.175 Sum_probs=26.2
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
...++.+++|.||+|||||||++.|+..+.
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 27 SVPKGEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346778999999999999999999997764
No 268
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.63 E-value=0.0024 Score=62.47 Aligned_cols=36 Identities=28% Similarity=0.272 Sum_probs=30.2
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSN 165 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D 165 (251)
...++-++|.||+|+|||++|+.+|.+++...+..+
T Consensus 214 i~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~ 249 (438)
T PTZ00361 214 IKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVV 249 (438)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEe
Confidence 345677999999999999999999999987666543
No 269
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.63 E-value=0.0015 Score=62.05 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=24.5
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..+.|+|+|||||||||+++.|....+
T Consensus 161 ~~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 161 GRLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred cCCeEEEECCCCccHHHHHHHHHcccC
Confidence 457899999999999999999998876
No 270
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=96.63 E-value=0.016 Score=45.32 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=21.8
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
+..|+|+|++|+|||||..+|....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~ 26 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEE 26 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCcc
Confidence 4679999999999999999997653
No 271
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=96.62 E-value=0.0017 Score=58.89 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=23.8
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHH
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAI 155 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk 155 (251)
..+++..++|+||||||||||..-|+-
T Consensus 27 ~i~~Ge~vaI~GpSGSGKSTLLniig~ 53 (226)
T COG1136 27 EIEAGEFVAIVGPSGSGKSTLLNLLGG 53 (226)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhc
Confidence 447788999999999999999998875
No 272
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.62 E-value=0.0014 Score=58.71 Aligned_cols=30 Identities=23% Similarity=0.340 Sum_probs=23.2
Q ss_pred EEcCCccCHHHHHHHHHHhcC-----CceEecCCc
Q 045245 138 VMGATATGKTKLSIDLAIHFS-----GEAINSNKI 167 (251)
Q Consensus 138 IsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds~ 167 (251)
|+||+||||||++..+.+-+. ..+||.|.-
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa 35 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPA 35 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchH
Confidence 689999999999999998765 358888864
No 273
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.62 E-value=0.0014 Score=51.09 Aligned_cols=23 Identities=26% Similarity=0.554 Sum_probs=20.8
Q ss_pred EEEEcCCccCHHHHHHHHHHhcC
Q 045245 136 VFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 136 IvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
|.|.||+|+|||++|..|++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999998775
No 274
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=96.62 E-value=0.0018 Score=54.92 Aligned_cols=29 Identities=24% Similarity=0.299 Sum_probs=25.3
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++.+++|.||+|||||||.+.|+-...
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (205)
T cd03226 23 LYAGEIIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36678999999999999999999987653
No 275
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.61 E-value=0.0018 Score=61.58 Aligned_cols=27 Identities=30% Similarity=0.549 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
++...|+|+|||||||||++..|.+.+
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999999876
No 276
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=96.61 E-value=0.0019 Score=55.50 Aligned_cols=28 Identities=21% Similarity=0.241 Sum_probs=25.2
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..++.+++|.||+|||||||++.|+-.+
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 23 IPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3677899999999999999999999776
No 277
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=96.61 E-value=0.0019 Score=54.70 Aligned_cols=29 Identities=24% Similarity=0.398 Sum_probs=25.3
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++.+++|.||+|||||||.+.|+-.+.
T Consensus 23 i~~G~~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03262 23 VKKGEVVVIIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36778999999999999999999997653
No 278
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.61 E-value=0.0022 Score=51.55 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=23.4
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
..+...++|.||+|||||||...|...
T Consensus 11 ~~~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 11 SSEEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred cCCccEEEEEccCCCCHHHHHHHHhcC
Confidence 345678999999999999999999875
No 279
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.60 E-value=0.002 Score=62.78 Aligned_cols=37 Identities=24% Similarity=0.278 Sum_probs=31.9
Q ss_pred ccCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEec
Q 045245 128 MNFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINS 164 (251)
Q Consensus 128 ~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~ 164 (251)
++.-.||-|+.+||||+|||.+|++||+-.+++.|-.
T Consensus 45 r~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKV 81 (444)
T COG1220 45 RDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKV 81 (444)
T ss_pred hhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 4556678999999999999999999999998877654
No 280
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.60 E-value=0.0064 Score=63.79 Aligned_cols=76 Identities=17% Similarity=0.191 Sum_probs=43.8
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCC-CccCHHHHHHHH
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPE-ADYPEEEFCEHA 211 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~-e~fsag~F~e~A 211 (251)
..-++++||+|+|||+++..||+.+....+. ....+.+...+|.-.+. ..-..++|.+..
T Consensus 208 ~~n~lLvG~pGvGKTal~~~La~~i~~~~v~-------------------~~l~~~~i~~l~l~~l~ag~~~~ge~e~~l 268 (852)
T TIGR03345 208 QNNPILTGEAGVGKTAVVEGLALRIAAGDVP-------------------PALRNVRLLSLDLGLLQAGASVKGEFENRL 268 (852)
T ss_pred cCceeEECCCCCCHHHHHHHHHHHHhhCCCC-------------------ccccCCeEEEeehhhhhcccccchHHHHHH
Confidence 3456799999999999999999987432111 11111122233322222 112357777777
Q ss_pred HHHHHHHHHcCCcEEE
Q 045245 212 LRAIDKIIENGHLHII 227 (251)
Q Consensus 212 ~k~I~eI~~~Gk~PIL 227 (251)
++.++++.+.+..+||
T Consensus 269 k~ii~e~~~~~~~~IL 284 (852)
T TIGR03345 269 KSVIDEVKASPQPIIL 284 (852)
T ss_pred HHHHHHHHhcCCCeEE
Confidence 7777777554444444
No 281
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=96.60 E-value=0.0016 Score=65.40 Aligned_cols=40 Identities=13% Similarity=0.243 Sum_probs=33.4
Q ss_pred ccCCCCeEEEEEcCCccCHHHHHHHHHHhcC-----CceEecCCc
Q 045245 128 MNFNKKKVVFVMGATATGKTKLSIDLAIHFS-----GEAINSNKI 167 (251)
Q Consensus 128 ~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds~ 167 (251)
...+++++|+++|.+||||||+|+.|++++. ...++.|.+
T Consensus 455 ~~~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~ 499 (632)
T PRK05506 455 RKGQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNV 499 (632)
T ss_pred HhCCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhh
Confidence 5556789999999999999999999999973 356777775
No 282
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=96.60 E-value=0.0017 Score=55.14 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=21.3
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHh
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
+|.|.++||+|+|||||+++|-..
T Consensus 1 MkrimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 1 MKRIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred CceEEEECCCCCCHHHHHHHHcCC
Confidence 368999999999999999999764
No 283
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.60 E-value=0.0088 Score=54.27 Aligned_cols=30 Identities=20% Similarity=0.262 Sum_probs=26.2
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFSG 159 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~ 159 (251)
.-++..++|.||+|+|||||++.+++..+.
T Consensus 13 i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 13 IGKGQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 356789999999999999999999987754
No 284
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.59 E-value=0.0026 Score=60.61 Aligned_cols=32 Identities=22% Similarity=0.132 Sum_probs=26.8
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcCCceEec
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINS 164 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~ 164 (251)
...++|.||+|+||||+|+.+++..+...+..
T Consensus 36 ~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l 67 (413)
T PRK13342 36 LSSMILWGPPGTGKTTLARIIAGATDAPFEAL 67 (413)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 34688899999999999999999987655544
No 285
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=96.59 E-value=0.002 Score=54.70 Aligned_cols=29 Identities=21% Similarity=0.193 Sum_probs=25.5
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++..++|.||+|||||||++.|+-.+.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03301 23 IADGEFVVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36778999999999999999999997653
No 286
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.59 E-value=0.0018 Score=55.45 Aligned_cols=28 Identities=21% Similarity=0.208 Sum_probs=24.8
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.+++.+++|.||+|||||||++.|+-..
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 27 VEEGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3677899999999999999999998765
No 287
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=96.59 E-value=0.002 Score=55.03 Aligned_cols=29 Identities=24% Similarity=0.305 Sum_probs=25.5
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++.+++|.||+|||||||.+.|+-.+.
T Consensus 28 i~~G~~~~i~G~nGsGKSTLl~~i~G~~~ 56 (221)
T TIGR02211 28 IGKGEIVAIVGSSGSGKSTLLHLLGGLDN 56 (221)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36778999999999999999999987654
No 288
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.58 E-value=0.0042 Score=56.29 Aligned_cols=67 Identities=9% Similarity=0.172 Sum_probs=39.2
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhc---CCceEecCCcceecccccc--cCCCC----ccccCCCCeEEeccCCCCC
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHF---SGEAINSNKIQVYKGLDIA--TNKVT----ASERQGVPHHLLGFVDPEA 200 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l---~~~VIS~Ds~QvYk~lsIg--TakP~----~eEr~gvpHhLVD~~d~~e 200 (251)
..+++.|++|+|||+|+.+++..+ +..++-.+.-.+...+... .+..+ .++...++.-++|......
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~~ 175 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQT 175 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCCC
Confidence 479999999999999999999877 3333333222222211110 11111 1234567788888776543
No 289
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.57 E-value=0.0022 Score=57.43 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=22.5
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
+.++|.||+|+|||++|+.+++.+.
T Consensus 37 ~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 37 PHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhc
Confidence 3688999999999999999999874
No 290
>PRK08116 hypothetical protein; Validated
Probab=96.57 E-value=0.0071 Score=54.97 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.+..++|.|++|+|||.||..+++.+
T Consensus 113 ~~~gl~l~G~~GtGKThLa~aia~~l 138 (268)
T PRK08116 113 ENVGLLLWGSVGTGKTYLAACIANEL 138 (268)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34569999999999999999999875
No 291
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=96.57 E-value=0.0026 Score=55.61 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=24.8
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
....++|+|.|++|+|||+||..+++.
T Consensus 16 ~~~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 16 SNEVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp TTSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred CCCeEEEEEEcCCcCCcceeeeecccc
Confidence 367799999999999999999999977
No 292
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=96.56 E-value=0.0021 Score=54.84 Aligned_cols=29 Identities=21% Similarity=0.211 Sum_probs=25.3
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++.+++|.||+|||||||++.|+-.+.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 25 VYKGEIFGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46778999999999999999999997653
No 293
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=96.56 E-value=0.0029 Score=56.18 Aligned_cols=93 Identities=18% Similarity=0.276 Sum_probs=53.9
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCc--eEecCCcceecccccccCCCCccccCCCCeEEeccCCCCC--------
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGE--AINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEA-------- 200 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~--VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e-------- 200 (251)
++++.|.++||||+||-||.......+... +.-+ + .+.|+.... .+-+|.-++..+|.+
T Consensus 3 ~~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fv------r--RvITRpa~a---g~EdH~avs~~eF~~~a~~g~FA 71 (192)
T COG3709 3 FMGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFV------R--RVITRPADA---GGEDHDALSEAEFNTRAGQGAFA 71 (192)
T ss_pred CCceEEEEECCCCCChHHHHHHHHHHhccCCceEEE------E--EEecccCCC---CcccccccCHHHHHHHhhcCcee
Confidence 357899999999999999998888877532 1111 1 234544443 234565555444433
Q ss_pred -ccCHHHHHHHHHHHHHHHHHcCCcEEEEcccHHHH
Q 045245 201 -DYPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYI 235 (251)
Q Consensus 201 -~fsag~F~e~A~k~I~eI~~~Gk~PILVGGTglYl 235 (251)
.|.+.......=..|.+-+++|.+ +|+-||--||
T Consensus 72 lsWqAhGL~Ygip~eId~wl~~G~v-vl~NgSRa~L 106 (192)
T COG3709 72 LSWQAHGLSYGIPAEIDLWLAAGDV-VLVNGSRAVL 106 (192)
T ss_pred EEehhcCccccCchhHHHHHhCCCE-EEEeccHhhh
Confidence 111111111112567777776665 5666676665
No 294
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.56 E-value=0.0046 Score=58.34 Aligned_cols=25 Identities=24% Similarity=0.389 Sum_probs=22.4
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
...++|.||+|+|||+|++++++++
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l 160 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEI 160 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 4679999999999999999998865
No 295
>PRK06921 hypothetical protein; Provisional
Probab=96.55 E-value=0.0049 Score=56.04 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
....+++.||+|+|||.||.++++++
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l 141 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANEL 141 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 35789999999999999999998865
No 296
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.55 E-value=0.0019 Score=59.19 Aligned_cols=26 Identities=31% Similarity=0.507 Sum_probs=22.9
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHH
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLA 154 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LA 154 (251)
...++-+++|+||||||||||.+-|-
T Consensus 24 ~v~~Gevv~iiGpSGSGKSTlLRclN 49 (240)
T COG1126 24 SVEKGEVVVIIGPSGSGKSTLLRCLN 49 (240)
T ss_pred eEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 34677899999999999999999885
No 297
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.54 E-value=0.0023 Score=53.51 Aligned_cols=29 Identities=21% Similarity=0.273 Sum_probs=25.1
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++.+++|.||+|+|||||++.|+..+.
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (178)
T cd03229 23 IEAGEIVALLGPSGSGKSTLLRCIAGLEE 51 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36678999999999999999999986553
No 298
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=96.54 E-value=0.0028 Score=46.97 Aligned_cols=25 Identities=20% Similarity=0.373 Sum_probs=20.7
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
++..+|+||+|||||||..++.--+
T Consensus 23 g~~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999998876543
No 299
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.54 E-value=0.0023 Score=54.89 Aligned_cols=29 Identities=17% Similarity=0.263 Sum_probs=25.1
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++.+++|.||+|||||||.+.|+-.+.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 51 (220)
T cd03265 23 VRRGEIFGLLGPNGAGKTTTIKMLTTLLK 51 (220)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35678999999999999999999997653
No 300
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=96.53 E-value=0.002 Score=55.49 Aligned_cols=28 Identities=18% Similarity=0.201 Sum_probs=24.7
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..++.+++|.||+|||||||++.|+-.+
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 23 VRPGEIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 3667899999999999999999998755
No 301
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.003 Score=60.98 Aligned_cols=39 Identities=26% Similarity=0.309 Sum_probs=34.3
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
+...++.+++.||+|+|||.||+++|...+..+++.|.-
T Consensus 272 ~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~ 310 (494)
T COG0464 272 GLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS 310 (494)
T ss_pred CCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH
Confidence 456677999999999999999999999999888887654
No 302
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=96.53 E-value=0.0034 Score=44.77 Aligned_cols=34 Identities=26% Similarity=0.384 Sum_probs=27.2
Q ss_pred EEEEEcCCccCHHHHHHHHHHhc---CCceEecCCcc
Q 045245 135 VVFVMGATATGKTKLSIDLAIHF---SGEAINSNKIQ 168 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l---~~~VIS~Ds~Q 168 (251)
++++.|..|+||||++..|+..+ +..++-.|.+.
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~d~i 37 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLIDDYV 37 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEECCEE
Confidence 36889999999999999999887 55677777433
No 303
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.53 E-value=0.0022 Score=55.74 Aligned_cols=29 Identities=24% Similarity=0.241 Sum_probs=25.3
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++.+++|.||+|||||||++.|+-.+.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (239)
T cd03296 25 IPSGELVALLGPSGSGKTTLLRLIAGLER 53 (239)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36778999999999999999999987653
No 304
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.53 E-value=0.0026 Score=62.15 Aligned_cols=38 Identities=18% Similarity=0.409 Sum_probs=31.9
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc-----CCceEecCCcc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF-----SGEAINSNKIQ 168 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l-----~~~VIS~Ds~Q 168 (251)
..+++++|+||+|+||||++.+||..+ ...+|.+|.+.
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR 246 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFR 246 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccC
Confidence 457899999999999999999998755 24589999874
No 305
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.52 E-value=0.0022 Score=59.31 Aligned_cols=26 Identities=35% Similarity=0.549 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..+.++|+|||||||||+++.|.+..
T Consensus 131 ~~~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 131 ARKNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHHh
Confidence 34678999999999999999999876
No 306
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=96.52 E-value=0.0023 Score=53.93 Aligned_cols=29 Identities=21% Similarity=0.326 Sum_probs=25.2
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++.+++|.||+|+|||||.+.|+-.+.
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 21 IEKGKMYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35678999999999999999999997653
No 307
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=96.52 E-value=0.0023 Score=54.97 Aligned_cols=29 Identities=21% Similarity=0.273 Sum_probs=25.5
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++.+++|.||+|+|||||++.|+-.+.
T Consensus 33 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 61 (228)
T PRK10584 33 VKRGETIALIGESGSGKSTLLAILAGLDD 61 (228)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 36778999999999999999999997653
No 308
>CHL00181 cbbX CbbX; Provisional
Probab=96.51 E-value=0.0025 Score=58.50 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=22.4
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
+..+++.||||+|||++|+.+++.+
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999999875
No 309
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=96.51 E-value=0.0023 Score=55.39 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=25.2
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++.+++|.||+|||||||++.|+-.+.
T Consensus 32 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (233)
T PRK11629 32 IGEGEMMAIVGSSGSGKSTLLHLLGGLDT 60 (233)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35678999999999999999999987653
No 310
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.51 E-value=0.0021 Score=54.58 Aligned_cols=26 Identities=27% Similarity=0.227 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.++ +++|.||+|||||||++.|+-.+
T Consensus 24 ~~g-~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 24 GPG-MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cCC-cEEEECCCCCCHHHHHHHHhCCC
Confidence 456 99999999999999999998654
No 311
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=96.51 E-value=0.0024 Score=55.45 Aligned_cols=28 Identities=21% Similarity=0.316 Sum_probs=24.9
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..++.+++|.||+|||||||++.|+-..
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 24 VRPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 4677899999999999999999998654
No 312
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.50 E-value=0.0025 Score=53.15 Aligned_cols=30 Identities=17% Similarity=0.318 Sum_probs=26.0
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..+++.+++|.||+|+|||||++.|+-...
T Consensus 24 ~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (178)
T cd03247 24 ELKQGEKIALLGRSGSGKSTLLQLLTGDLK 53 (178)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 346778999999999999999999987654
No 313
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=96.50 E-value=0.0024 Score=54.55 Aligned_cols=30 Identities=17% Similarity=0.304 Sum_probs=25.9
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..+++.+++|.||+|+|||||.+.|+-.+.
T Consensus 27 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 56 (228)
T cd03257 27 SIKKGETLGLVGESGSGKSTLARAILGLLK 56 (228)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346778999999999999999999997653
No 314
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.50 E-value=0.012 Score=54.74 Aligned_cols=96 Identities=14% Similarity=0.188 Sum_probs=53.3
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcC-----CceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHH
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFS-----GEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEE 205 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag 205 (251)
.+..+|.|+||+|+|||||..+|.+.+- .-|+..|.-.-+.+=.+.-.+.+-.+...-|--|+--..-.. +.+
T Consensus 27 g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG--~lG 104 (266)
T PF03308_consen 27 GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRG--SLG 104 (266)
T ss_dssp T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---S--SHH
T ss_pred CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCC--CCC
Confidence 4567999999999999999999988762 458888875444444444344443333322333333222222 355
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEE
Q 045245 206 EFCEHALRAIDKIIENGHLHIIV 228 (251)
Q Consensus 206 ~F~e~A~k~I~eI~~~Gk~PILV 228 (251)
---....+++.-+-..|-..||+
T Consensus 105 Gls~~t~~~v~ll~aaG~D~Iii 127 (266)
T PF03308_consen 105 GLSRATRDAVRLLDAAGFDVIII 127 (266)
T ss_dssp HHHHHHHHHHHHHHHTT-SEEEE
T ss_pred CccHhHHHHHHHHHHcCCCEEEE
Confidence 55555566666565678888883
No 315
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=96.50 E-value=0.0024 Score=54.97 Aligned_cols=28 Identities=18% Similarity=0.217 Sum_probs=24.8
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..++.+++|.||+|||||||.+.|+-..
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 23 VKQGEIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred ecCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3667899999999999999999998754
No 316
>PRK14974 cell division protein FtsY; Provisional
Probab=96.49 E-value=0.0026 Score=60.28 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=28.8
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc---C--CceEecCCc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF---S--GEAINSNKI 167 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l---~--~~VIS~Ds~ 167 (251)
.++.+|+++||+|+||||++.+||..+ + ..++.+|.+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~ 179 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTF 179 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcC
Confidence 346899999999999999888888654 2 346777854
No 317
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=96.49 E-value=0.0025 Score=54.00 Aligned_cols=29 Identities=17% Similarity=0.146 Sum_probs=25.2
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++.+++|.||+|+|||||.+.|+-...
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (208)
T cd03268 23 VKKGEIYGFLGPNGAGKTTTMKIILGLIK 51 (208)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 36778999999999999999999987543
No 318
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.48 E-value=0.0031 Score=56.73 Aligned_cols=53 Identities=26% Similarity=0.337 Sum_probs=38.2
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcce-ecccccccCCCCccccCCCC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQV-YKGLDIATNKVTASERQGVP 189 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~Qv-Yk~lsIgTakP~~eEr~gvp 189 (251)
.++-.++|.||||+|||||.+.+|. ++|.|+=.+ |++-++.|.+|.. -|..|.
T Consensus 27 ~~Ge~iaitGPSG~GKStllk~va~-----Lisp~~G~l~f~Ge~vs~~~pea-~Rq~Vs 80 (223)
T COG4619 27 RAGEFIAITGPSGCGKSTLLKIVAS-----LISPTSGTLLFEGEDVSTLKPEA-YRQQVS 80 (223)
T ss_pred cCCceEEEeCCCCccHHHHHHHHHh-----ccCCCCceEEEcCccccccChHH-HHHHHH
Confidence 4456899999999999999999986 445554444 6888888887743 344443
No 319
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.48 E-value=0.0026 Score=53.81 Aligned_cols=29 Identities=24% Similarity=0.354 Sum_probs=25.4
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.+++.+++|.||+|+|||||++.|+-...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 23 FLPSAITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35678999999999999999999988654
No 320
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=96.48 E-value=0.0024 Score=55.11 Aligned_cols=27 Identities=33% Similarity=0.519 Sum_probs=24.5
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
..++.+++|.||+|||||||.+.|+-.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 23 VKKGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 367789999999999999999999876
No 321
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.48 E-value=0.0027 Score=52.84 Aligned_cols=29 Identities=14% Similarity=0.266 Sum_probs=25.4
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.+++.+++|.||+|+|||||.+.|+-.+.
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 53 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLLR 53 (173)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 36778999999999999999999997653
No 322
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=96.48 E-value=0.0027 Score=52.61 Aligned_cols=24 Identities=38% Similarity=0.450 Sum_probs=21.4
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhc
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
++|.|+|+++||||||++.|.+.+
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998766
No 323
>PRK10908 cell division protein FtsE; Provisional
Probab=96.48 E-value=0.0026 Score=54.63 Aligned_cols=29 Identities=17% Similarity=0.225 Sum_probs=25.4
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++.+++|.||+|||||||++.|+-.+.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (222)
T PRK10908 25 MRPGEMAFLTGHSGAGKSTLLKLICGIER 53 (222)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36778999999999999999999987653
No 324
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.47 E-value=0.0037 Score=61.18 Aligned_cols=31 Identities=23% Similarity=0.397 Sum_probs=28.0
Q ss_pred ccCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 128 MNFNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 128 ~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.....++-|+|.||+|+|||+||..+|+++|
T Consensus 60 ~gk~aGrgiLi~GppgTGKTAlA~gIa~eLG 90 (450)
T COG1224 60 QGKMAGRGILIVGPPGTGKTALAMGIARELG 90 (450)
T ss_pred hCcccccEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4456679999999999999999999999997
No 325
>COG4639 Predicted kinase [General function prediction only]
Probab=96.47 E-value=0.0033 Score=55.07 Aligned_cols=72 Identities=14% Similarity=0.337 Sum_probs=47.1
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHH---HHHH
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEE---EFCE 209 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag---~F~e 209 (251)
..++++.|++||||||+|+... .+.+++++|+++--.+ ....+..+.+ +-.+
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n~--~~~~~lsld~~r~~lg-----------------------~~~~~e~sqk~~~~~~~ 56 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKENF--LQNYVLSLDDLRLLLG-----------------------VSASKENSQKNDELVWD 56 (168)
T ss_pred ceEEEEecCCCCchhHHHHHhC--CCcceecHHHHHHHhh-----------------------hchhhhhccccHHHHHH
Confidence 3689999999999999998743 3568999988741111 1111111211 2334
Q ss_pred HHHHHHHHHHHcCCcEEEEc
Q 045245 210 HALRAIDKIIENGHLHIIVG 229 (251)
Q Consensus 210 ~A~k~I~eI~~~Gk~PILVG 229 (251)
.+.+.+++..++|+..|+..
T Consensus 57 ~l~~~l~qrl~~Gk~tiidA 76 (168)
T COG4639 57 ILYKQLEQRLRRGKFTIIDA 76 (168)
T ss_pred HHHHHHHHHHHcCCeEEEEc
Confidence 55677888888999988853
No 326
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=96.46 E-value=0.011 Score=56.64 Aligned_cols=101 Identities=22% Similarity=0.302 Sum_probs=57.7
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCc--------eEecCCcceecccccccCCCCccccCCCCeEEecc----CCC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGE--------AINSNKIQVYKGLDIATNKVTASERQGVPHHLLGF----VDP 198 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~--------VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~----~d~ 198 (251)
...|+|++-|+-|||||+||++||++++.+ +|-.|++- +..-+..+.- ...+.+.|. .+|
T Consensus 69 enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg-~D~r~l~~~~-------p~~cr~~di~~Fy~dP 140 (393)
T KOG3877|consen 69 ENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYG-NDLRNLYNKF-------PARCRLPDISMFYKDP 140 (393)
T ss_pred ccceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccC-ccchhccccC-------CcccCchhHHHhccCC
Confidence 345899999999999999999999999854 33344431 1111111111 112333332 234
Q ss_pred CCccCHHHHHHH--------HHHHHHHHHHcCCcEEEEcccH---HHHHHHHc
Q 045245 199 EADYPEEEFCEH--------ALRAIDKIIENGHLHIIVGGSN---TYIEALVE 240 (251)
Q Consensus 199 ~e~fsag~F~e~--------A~k~I~eI~~~Gk~PILVGGTg---lYlkaLl~ 240 (251)
..+. ...+..+ ...+++.++..|.-++|.---. .|++|+.+
T Consensus 141 S~dl-sa~~Q~r~y~~R~~QY~dAL~HiL~TGQGVVLERsp~SDFVF~eAM~~ 192 (393)
T KOG3877|consen 141 SGDL-SAAMQDRIYNCRFDQYLDALAHILNTGQGVVLERSPHSDFVFAEAMRD 192 (393)
T ss_pred CccH-HHHHHHHHHHhHHHHHHHHHHHHHhcCCeEEEecCcchhHHHHHHHHh
Confidence 4442 2333322 2578899999999888853211 25555544
No 327
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=96.46 E-value=0.0025 Score=54.88 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
+++.++++|+||+|||||.+.|.....
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~~~ 60 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPEAK 60 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTSS-
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 348999999999999999999988654
No 328
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.46 E-value=0.0032 Score=53.32 Aligned_cols=28 Identities=21% Similarity=0.456 Sum_probs=24.5
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.+++.++.|.||+|||||+++..++...
T Consensus 9 i~~g~i~~i~G~~GsGKT~l~~~~~~~~ 36 (209)
T TIGR02237 9 VERGTITQIYGPPGSGKTNICMILAVNA 36 (209)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4778899999999999999999988643
No 329
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=96.46 E-value=0.0022 Score=61.94 Aligned_cols=31 Identities=19% Similarity=0.361 Sum_probs=27.2
Q ss_pred ccCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 128 MNFNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 128 ~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
-..+++..++|+||||||||||++.|+.-+.
T Consensus 356 l~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 356 LDLPPGERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3457889999999999999999999987764
No 330
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=96.46 E-value=0.014 Score=55.75 Aligned_cols=98 Identities=15% Similarity=0.157 Sum_probs=66.3
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcC-----CceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccC
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS-----GEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYP 203 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fs 203 (251)
+..+..+|.|.|++|+|||||.-+|..++- ..||..|.-.-|.+=+|.-.+.+-.+...-|--|+-..+-.. +
T Consensus 47 ~tG~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG--~ 124 (323)
T COG1703 47 RTGNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRG--T 124 (323)
T ss_pred cCCCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCc--c
Confidence 335678999999999999999999998773 468888987666666666666666555444444554444333 2
Q ss_pred HHHHHHHHHHHHHHHHHcCCcEEEE
Q 045245 204 EEEFCEHALRAIDKIIENGHLHIIV 228 (251)
Q Consensus 204 ag~F~e~A~k~I~eI~~~Gk~PILV 228 (251)
.+.--+.....+.-+-..|-..||+
T Consensus 125 lGGlS~at~~~i~~ldAaG~DvIIV 149 (323)
T COG1703 125 LGGLSRATREAIKLLDAAGYDVIIV 149 (323)
T ss_pred chhhhHHHHHHHHHHHhcCCCEEEE
Confidence 3444444555555555678888874
No 331
>PHA02244 ATPase-like protein
Probab=96.46 E-value=0.0028 Score=61.52 Aligned_cols=35 Identities=23% Similarity=0.312 Sum_probs=29.4
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSN 165 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D 165 (251)
..+..|+|.||||+|||++|+.++..++.+.+..+
T Consensus 117 ~~~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In 151 (383)
T PHA02244 117 NANIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMN 151 (383)
T ss_pred hcCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 44567899999999999999999999987766553
No 332
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=96.45 E-value=0.0027 Score=54.16 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=25.1
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..++.+++|.||+|||||||.+.|+-..
T Consensus 27 i~~G~~~~i~G~nGsGKSTLl~~i~G~~ 54 (220)
T cd03245 27 IRAGEKVAIIGRVGSGKSTLLKLLAGLY 54 (220)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3678899999999999999999998765
No 333
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.45 E-value=0.0026 Score=55.50 Aligned_cols=28 Identities=18% Similarity=0.301 Sum_probs=24.9
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.+++.+++|.||+|||||||++.|+-.+
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 26 IPDNTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3677899999999999999999998765
No 334
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.45 E-value=0.0028 Score=52.74 Aligned_cols=29 Identities=21% Similarity=0.234 Sum_probs=25.2
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++..++|.||+|||||||.+.|+-.+.
T Consensus 23 i~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (173)
T cd03230 23 VEKGEIYGLLGPNGAGKTTLIKIILGLLK 51 (173)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36678999999999999999999987653
No 335
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.44 E-value=0.0034 Score=61.31 Aligned_cols=38 Identities=21% Similarity=0.303 Sum_probs=30.8
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc----C---CceEecCCcc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF----S---GEAINSNKIQ 168 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l----~---~~VIS~Ds~Q 168 (251)
.++.+++++||||+||||+..+||..+ + ..++..|.+.
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~r 233 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYR 233 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcc
Confidence 567899999999999999999998753 2 3577788854
No 336
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.44 E-value=0.0032 Score=53.74 Aligned_cols=28 Identities=36% Similarity=0.552 Sum_probs=24.9
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.+++.++.|.|++|||||+++..++...
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~~a~~~ 43 (218)
T cd01394 16 VERGTVTQVYGPPGTGKTNIAIQLAVET 43 (218)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4778899999999999999999998654
No 337
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=96.44 E-value=0.012 Score=53.31 Aligned_cols=84 Identities=12% Similarity=0.179 Sum_probs=46.1
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCc--cccCCCCeEEeccCCCCCccCHHH
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTA--SERQGVPHHLLGFVDPEADYPEEE 206 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~--eEr~gvpHhLVD~~d~~e~fsag~ 206 (251)
....+..|+|.|.||+|||||...|..+...++ + .+ +-+|..+.. .+.++.+..++|--.+.+.-.-..
T Consensus 27 ~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v-~--~~------~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~ 97 (249)
T cd01853 27 ELDFSLTILVLGKTGVGKSSTINSIFGERKAAT-S--AF------QSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQR 97 (249)
T ss_pred hccCCeEEEEECCCCCcHHHHHHHHhCCCCccc-C--CC------CCceEEEEEEEEEECCeEEEEEECCCcCcchhhHH
Confidence 335567899999999999999999987643222 1 11 001111111 122455667888766654321122
Q ss_pred HHHHHHHHHHHHHHc
Q 045245 207 FCEHALRAIDKIIEN 221 (251)
Q Consensus 207 F~e~A~k~I~eI~~~ 221 (251)
..+.+.+.+.+..++
T Consensus 98 ~~~~~~~~I~~~l~~ 112 (249)
T cd01853 98 VNRKILSSIKRYLKK 112 (249)
T ss_pred HHHHHHHHHHHHHhc
Confidence 333445555555543
No 338
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=96.44 E-value=0.0028 Score=55.13 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=24.8
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..++.+++|.||+|||||||++.|+-..
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 25 CPQGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3567899999999999999999998755
No 339
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=96.44 E-value=0.0027 Score=55.57 Aligned_cols=28 Identities=21% Similarity=0.336 Sum_probs=24.6
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..++.+++|.||+|||||||.+.|+...
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 29 FEQNQVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4677899999999999999999998643
No 340
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=96.43 E-value=0.0027 Score=55.37 Aligned_cols=29 Identities=24% Similarity=0.338 Sum_probs=25.2
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++.+++|.||+|||||||++.|+-.+.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 54 (250)
T PRK11264 26 VKPGEVVAIIGPSGSGKTTLLRCINLLEQ 54 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36778999999999999999999987653
No 341
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.43 E-value=0.0029 Score=61.95 Aligned_cols=37 Identities=22% Similarity=0.340 Sum_probs=30.8
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcC-----CceEecCCc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFS-----GEAINSNKI 167 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds~ 167 (251)
.++.+|+++|++|+||||++..||..+. ..++.+|.+
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 3578999999999999999999987662 457888875
No 342
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.42 E-value=0.0029 Score=54.35 Aligned_cols=29 Identities=28% Similarity=0.367 Sum_probs=25.5
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.+++.+++|.||+|+|||||.+.|+-...
T Consensus 26 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 54 (229)
T cd03254 26 IKPGETVAIVGPTGAGKTTLINLLMRFYD 54 (229)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 36778999999999999999999997653
No 343
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=96.42 E-value=0.0029 Score=53.92 Aligned_cols=29 Identities=24% Similarity=0.203 Sum_probs=25.2
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++.+++|.||+|||||||.+.|+..+.
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (218)
T cd03266 28 VKPGEVTGLLGPNGAGKTTTLRMLAGLLE 56 (218)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 36678999999999999999999987653
No 344
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=96.42 E-value=0.0028 Score=54.91 Aligned_cols=29 Identities=17% Similarity=0.267 Sum_probs=25.2
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..+++.+++|.||+|||||||++.|+-..
T Consensus 29 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 29 SLRAGEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34677899999999999999999998754
No 345
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=96.42 E-value=0.0026 Score=55.13 Aligned_cols=29 Identities=21% Similarity=0.133 Sum_probs=25.2
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..+++.+++|.||+|||||||.+.|+.-.
T Consensus 9 ~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~ 37 (213)
T PRK15177 9 VMGYHEHIGILAAPGSGKTTLTRLLCGLD 37 (213)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34677899999999999999999998654
No 346
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=96.42 E-value=0.011 Score=57.25 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=22.4
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
...++|.||+|+|||+|+.+++.++
T Consensus 130 ~n~l~lyG~~G~GKTHLl~ai~~~l 154 (440)
T PRK14088 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHHHH
Confidence 4579999999999999999999874
No 347
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.41 E-value=0.0029 Score=54.50 Aligned_cols=29 Identities=31% Similarity=0.344 Sum_probs=25.6
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++.+++|.||+|||||||++.|+-.+.
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (230)
T TIGR03410 23 VPKGEVTCVLGRNGVGKTTLLKTLMGLLP 51 (230)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46778999999999999999999997653
No 348
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=96.41 E-value=0.003 Score=54.24 Aligned_cols=26 Identities=23% Similarity=0.301 Sum_probs=23.1
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHH
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAI 155 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk 155 (251)
.+++.+++|.||+|+|||||.+.+..
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 46778999999999999999999864
No 349
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=96.41 E-value=0.0029 Score=53.52 Aligned_cols=29 Identities=31% Similarity=0.287 Sum_probs=25.6
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++.+++|.||+|+|||||.+.|+-.+.
T Consensus 23 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (198)
T TIGR01189 23 LNAGEALQVTGPNGIGKTTLLRILAGLLR 51 (198)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46778999999999999999999988653
No 350
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=96.41 E-value=0.0033 Score=51.16 Aligned_cols=28 Identities=14% Similarity=0.349 Sum_probs=23.7
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFSG 159 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~ 159 (251)
.+.+.+|+||+|+||||++.+|.-.++.
T Consensus 18 ~~g~~vi~G~Ng~GKStil~ai~~~L~~ 45 (202)
T PF13476_consen 18 SPGLNVIYGPNGSGKSTILEAIRYALGG 45 (202)
T ss_dssp -SEEEEEEESTTSSHHHHHHHHHHHHHS
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4579999999999999999999776654
No 351
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.39 E-value=0.0029 Score=52.26 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=18.1
Q ss_pred EEEEEcCCccCHHHHHHHHHHhc
Q 045245 135 VVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l 157 (251)
+.+|.||+|+|||+++..+...+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 79999999999998877776665
No 352
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=96.39 E-value=0.003 Score=54.58 Aligned_cols=28 Identities=21% Similarity=0.395 Sum_probs=25.0
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.+++.+++|.||+|||||||++.|+-.+
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (237)
T cd03252 25 IKPGEVVGIVGRSGSGKSTLTKLIQRFY 52 (237)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCc
Confidence 3677899999999999999999999765
No 353
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.38 E-value=0.0038 Score=63.95 Aligned_cols=32 Identities=25% Similarity=0.259 Sum_probs=28.1
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNK 166 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds 166 (251)
.+++.||||+|||++|+.||+.++..++..|.
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~ 517 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEALGVHLERFDM 517 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHhcCCeEEEeC
Confidence 57999999999999999999999877776653
No 354
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.38 E-value=0.0031 Score=54.90 Aligned_cols=30 Identities=17% Similarity=0.286 Sum_probs=25.8
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
...++.+++|.||+|+|||||++.|+-.+.
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (242)
T cd03295 23 EIAKGEFLVLIGPSGSGKTTTMKMINRLIE 52 (242)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 346778999999999999999999987653
No 355
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=96.38 E-value=0.0027 Score=54.80 Aligned_cols=26 Identities=12% Similarity=0.263 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.++ +++|+||+|+|||||.+.|+--.
T Consensus 21 ~~g-~~~i~G~nGsGKStll~al~~l~ 46 (197)
T cd03278 21 PPG-LTAIVGPNGSGKSNIIDAIRWVL 46 (197)
T ss_pred CCC-cEEEECCCCCCHHHHHHHHHHHh
Confidence 445 89999999999999999997443
No 356
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.37 E-value=0.0031 Score=53.48 Aligned_cols=27 Identities=30% Similarity=0.300 Sum_probs=23.9
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
..++.+++|.||+|+|||||++.|+-.
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 30 VKPGTLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 366789999999999999999999853
No 357
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=96.37 E-value=0.0032 Score=54.71 Aligned_cols=29 Identities=21% Similarity=0.218 Sum_probs=25.6
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++.+++|.||+|||||||.+.|+-.+.
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 54 (241)
T PRK10895 26 VNSGEIVGLLGPNGAGKTTTFYMVVGIVP 54 (241)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36778999999999999999999997653
No 358
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.37 E-value=0.0043 Score=62.04 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=23.9
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFSG 159 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~ 159 (251)
.-+++++|||||||||......+.++.
T Consensus 258 ~GliLvTGPTGSGKTTTLY~~L~~ln~ 284 (500)
T COG2804 258 QGLILVTGPTGSGKTTTLYAALSELNT 284 (500)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhcC
Confidence 468999999999999999999888874
No 359
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.37 E-value=0.0031 Score=54.23 Aligned_cols=27 Identities=30% Similarity=0.346 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
+++.+++|.||+|+|||||.+.|+-..
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 49 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQL 49 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 667899999999999999999998765
No 360
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.37 E-value=0.0032 Score=55.09 Aligned_cols=29 Identities=17% Similarity=0.306 Sum_probs=25.2
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++.+++|.||+|||||||++.|+-.+.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (241)
T PRK14250 26 FEGGAIYTIVGPSGAGKSTLIKLINRLID 54 (241)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35678999999999999999999997653
No 361
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.37 E-value=0.011 Score=55.85 Aligned_cols=93 Identities=19% Similarity=0.103 Sum_probs=48.9
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhc---CCceEecCCcceecccccc--cCCCC----ccccCCCCeEEeccCCCCCccC
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHF---SGEAINSNKIQVYKGLDIA--TNKVT----ASERQGVPHHLLGFVDPEADYP 203 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l---~~~VIS~Ds~QvYk~lsIg--TakP~----~eEr~gvpHhLVD~~d~~e~fs 203 (251)
..-++|.||||+|||.||.++|+.+ +..|+-.+.-.+...+.-. .+... .+....++--.+|...... .
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e~--~ 260 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLGTEK--I 260 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccCCCC--C
Confidence 3679999999999999999999876 3333333222222222111 11111 1223455666666553321 1
Q ss_pred HHHHHHHHHHHHHHHHHcCCcEEE
Q 045245 204 EEEFCEHALRAIDKIIENGHLHII 227 (251)
Q Consensus 204 ag~F~e~A~k~I~eI~~~Gk~PIL 227 (251)
-....+.....++.-..+++..||
T Consensus 261 t~~~~~~Lf~iin~R~~~~k~tIi 284 (329)
T PRK06835 261 TEFSKSELFNLINKRLLRQKKMII 284 (329)
T ss_pred CHHHHHHHHHHHHHHHHCCCCEEE
Confidence 112223344566666666655444
No 362
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=96.36 E-value=0.0034 Score=52.26 Aligned_cols=30 Identities=23% Similarity=0.347 Sum_probs=25.9
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
...++.+++|.||+|||||||++.|+-...
T Consensus 23 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 23 EIKPGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 346778999999999999999999987654
No 363
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=96.36 E-value=0.0032 Score=55.97 Aligned_cols=28 Identities=25% Similarity=0.354 Sum_probs=24.9
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..++.+++|.||+|||||||++.|+-..
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 24 LESGELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3677899999999999999999999765
No 364
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.36 E-value=0.0066 Score=58.38 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.7
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
...++|.||+|+|||+|++.++.+.
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~ 172 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYI 172 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4679999999999999999999876
No 365
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.36 E-value=0.0031 Score=57.58 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=21.9
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
...++|.||||+|||++|+.+++.+
T Consensus 58 ~~~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHH
Confidence 3479999999999999999888765
No 366
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.36 E-value=0.0033 Score=53.50 Aligned_cols=30 Identities=30% Similarity=0.266 Sum_probs=26.1
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
...++.+++|.||+|||||||.+.|+..+.
T Consensus 23 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (204)
T PRK13538 23 TLNAGELVQIEGPNGAGKTSLLRILAGLAR 52 (204)
T ss_pred EECCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346778999999999999999999998654
No 367
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=96.36 E-value=0.0031 Score=54.75 Aligned_cols=29 Identities=21% Similarity=0.348 Sum_probs=25.4
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++.+++|.||+|||||||++.|+-.+.
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (240)
T PRK09493 24 IDQGEVVVIIGPSGSGKSTLLRCINKLEE 52 (240)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36778999999999999999999997653
No 368
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.36 E-value=0.0029 Score=58.18 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=25.0
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..+..++|+|||||||||+++.|...++
T Consensus 142 ~~~~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 142 ASRKNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHccCC
Confidence 3567999999999999999999998775
No 369
>PRK13768 GTPase; Provisional
Probab=96.35 E-value=0.0043 Score=55.66 Aligned_cols=34 Identities=26% Similarity=0.425 Sum_probs=27.2
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcC-----CceEecCC
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFS-----GEAINSNK 166 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds 166 (251)
+++++|.||+||||||++..++..+. ..+|..|.
T Consensus 2 ~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 2 MYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred cEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 46899999999999999998887652 34677764
No 370
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=96.35 E-value=0.0033 Score=54.73 Aligned_cols=28 Identities=14% Similarity=0.195 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.++.+++|.||+|||||||++.|+-...
T Consensus 9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 36 (230)
T TIGR01184 9 QQGEFISLIGHSGCGKSTLLNLISGLAQ 36 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5678999999999999999999987653
No 371
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=96.35 E-value=0.0055 Score=54.52 Aligned_cols=105 Identities=14% Similarity=0.098 Sum_probs=64.7
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccC-CCCeEEeccC-CCCC----ccCHH
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQ-GVPHHLLGFV-DPEA----DYPEE 205 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~-gvpHhLVD~~-d~~e----~fsag 205 (251)
+++.|+|-|.=||||||.++.|++.+...-+. -+.|+.|+-.... .+.+.+++.. ..+. ..=++
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~----------v~~trEP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaa 71 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIK----------VVLTREPGGTPIGEKIRELLLNGEEKLSPKAEALLFAA 71 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCe----------EEEEeCCCCChHHHHHHHHHcCCccCCCHHHHHHHHHH
Confidence 46799999999999999999999988533221 1256777762221 1234444432 1111 11256
Q ss_pred HHHHHHHHHHHHHHHcCCcEEE--EcccHHHHHHHHcCCchhh
Q 045245 206 EFCEHALRAIDKIIENGHLHII--VGGSNTYIEALVEDSIINF 246 (251)
Q Consensus 206 ~F~e~A~k~I~eI~~~Gk~PIL--VGGTglYlkaLl~g~~~~~ 246 (251)
+..++..+.|.....+|+++|. -=.|.+..++...|+..++
T Consensus 72 dR~~h~~~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~ 114 (208)
T COG0125 72 DRAQHLEEVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDW 114 (208)
T ss_pred HHHHHHHHHHHHhhcCCCEEEECCcccHHHHhhhhccCCCHHH
Confidence 6666677888888888888777 2345555555555544443
No 372
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=96.35 E-value=0.0033 Score=54.38 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=25.2
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.+++.+++|.||+|||||||++.|+-.+
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 53 (238)
T cd03249 26 IPPGKTVALVGSSGCGKSTVVSLLERFY 53 (238)
T ss_pred ecCCCEEEEEeCCCCCHHHHHHHHhccC
Confidence 3677899999999999999999999765
No 373
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=96.35 E-value=0.0031 Score=58.12 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=26.8
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..+++.++.|.||+|||||||.+.|+.-+.
T Consensus 24 ~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~ 53 (258)
T COG1120 24 SIPKGEITGILGPNGSGKSTLLKCLAGLLK 53 (258)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 347789999999999999999999998765
No 374
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.35 E-value=0.0034 Score=53.33 Aligned_cols=29 Identities=21% Similarity=0.334 Sum_probs=25.3
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++.+++|.||+|||||||.+.|+..+.
T Consensus 21 i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~ 49 (211)
T cd03298 21 FAQGEITAIVGPSGSGKSTLLNLIAGFET 49 (211)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36778999999999999999999987653
No 375
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.34 E-value=0.0029 Score=59.49 Aligned_cols=28 Identities=29% Similarity=0.401 Sum_probs=24.9
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFSG 159 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~ 159 (251)
..+-|+|+|+|||||||+.++|....+.
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~ 186 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPA 186 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCC
Confidence 3578999999999999999999998863
No 376
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=96.34 E-value=0.0046 Score=57.35 Aligned_cols=31 Identities=19% Similarity=0.267 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceE
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAI 162 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VI 162 (251)
+.+++|+|+|++||||||+++.|. ..+...+
T Consensus 4 ~~~~~i~i~G~~GsGKtt~~~~l~-~~g~~~~ 34 (288)
T PRK05416 4 APMRLVIVTGLSGAGKSVALRALE-DLGYYCV 34 (288)
T ss_pred CCceEEEEECCCCCcHHHHHHHHH-HcCCeEE
Confidence 445799999999999999999996 4454444
No 377
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.33 E-value=0.0041 Score=64.14 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=28.6
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceE
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAI 162 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VI 162 (251)
+..+++.+++.||||+|||++|+.||+.++...+
T Consensus 343 ~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~ 376 (775)
T TIGR00763 343 GKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFV 376 (775)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeE
Confidence 3445678999999999999999999999986544
No 378
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.33 E-value=0.003 Score=51.81 Aligned_cols=22 Identities=23% Similarity=0.457 Sum_probs=19.1
Q ss_pred EEEEEcCCccCHHHHHHHHHHh
Q 045245 135 VVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~ 156 (251)
+++|.||||+|||+|+..++..
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~ 22 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYA 22 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999999988664
No 379
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=96.33 E-value=0.0035 Score=54.80 Aligned_cols=28 Identities=25% Similarity=0.331 Sum_probs=25.0
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.+++.+++|.||+|||||||++.|+-.+
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (247)
T TIGR00972 24 IPKNQVTALIGPSGCGKSTLLRSLNRMN 51 (247)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 4677899999999999999999998654
No 380
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.33 E-value=0.0036 Score=53.13 Aligned_cols=29 Identities=21% Similarity=0.250 Sum_probs=25.3
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++.+++|.||+|+|||||.+.|+-...
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 52 (200)
T PRK13540 24 LPAGGLLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36778999999999999999999987653
No 381
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=96.33 E-value=0.0034 Score=54.42 Aligned_cols=29 Identities=14% Similarity=0.347 Sum_probs=25.3
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++.+++|.||+|||||||.+.|+-...
T Consensus 9 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 9 LKRGEVLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36778999999999999999999997653
No 382
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.32 E-value=0.0033 Score=59.35 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=22.5
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
++-|+|+|+|||||||++++|....
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i 168 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEI 168 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999999876
No 383
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=96.32 E-value=0.0033 Score=55.60 Aligned_cols=29 Identities=21% Similarity=0.398 Sum_probs=25.2
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
...++.+++|.||+|||||||++.|+-.+
T Consensus 35 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 35 DIAKNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34677899999999999999999998654
No 384
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.32 E-value=0.0033 Score=53.70 Aligned_cols=27 Identities=30% Similarity=0.290 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.+ .+++|.||+|||||||++.|+-.+.
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~~ 48 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLEK 48 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCCC
Confidence 56 8999999999999999999987653
No 385
>PLN02924 thymidylate kinase
Probab=96.31 E-value=0.0038 Score=55.38 Aligned_cols=31 Identities=16% Similarity=0.298 Sum_probs=27.7
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSG 159 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~ 159 (251)
+.++++.|+|.|+-||||||+++.|++.+..
T Consensus 12 ~~~~g~~IviEGiDGsGKsTq~~~L~~~l~~ 42 (220)
T PLN02924 12 VESRGALIVLEGLDRSGKSTQCAKLVSFLKG 42 (220)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 4467789999999999999999999999964
No 386
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=96.31 E-value=0.0034 Score=54.92 Aligned_cols=30 Identities=23% Similarity=0.316 Sum_probs=26.0
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
...++.+++|.||+|||||||.+.|+....
T Consensus 25 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 54 (253)
T TIGR02323 25 DLYPGEVLGIVGESGSGKSTLLGCLAGRLA 54 (253)
T ss_pred EEeCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346778999999999999999999998664
No 387
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.31 E-value=0.0037 Score=55.65 Aligned_cols=27 Identities=26% Similarity=0.338 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.++.+++|.||+|||||||.+.|+-..
T Consensus 23 ~~Ge~~~i~G~NGsGKSTLlk~L~G~~ 49 (246)
T cd03237 23 SESEVIGILGPNGIGKTTFIKMLAGVL 49 (246)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 567899999999999999999998765
No 388
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.31 E-value=0.0036 Score=53.86 Aligned_cols=29 Identities=17% Similarity=0.329 Sum_probs=25.3
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.+++.+++|.||+|+|||||++.|+-...
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (234)
T cd03251 25 IPAGETVALVGPSGSGKSTLVNLIPRFYD 53 (234)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 36778999999999999999999987653
No 389
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.31 E-value=0.0037 Score=53.45 Aligned_cols=29 Identities=21% Similarity=0.267 Sum_probs=25.5
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.+++.+++|.||+|+|||||++.|+....
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (207)
T PRK13539 25 LAAGEALVLTGPNGSGKTTLLRLIAGLLP 53 (207)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36778999999999999999999988653
No 390
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.30 E-value=0.0036 Score=54.68 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=24.3
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..++.+++|.||+|+|||||++.|+-..
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~ 53 (250)
T PRK14262 26 IFKNQITAIIGPSGCGKTTLLRSINRMN 53 (250)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3567899999999999999999999543
No 391
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.30 E-value=0.0035 Score=53.11 Aligned_cols=30 Identities=23% Similarity=0.357 Sum_probs=26.2
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..+++.+++|.||+|+|||||++.|+-...
T Consensus 27 ~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~ 56 (204)
T cd03250 27 EVPKGELVAIVGPVGSGKSSLLSALLGELE 56 (204)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence 457889999999999999999999987653
No 392
>PRK10436 hypothetical protein; Provisional
Probab=96.30 E-value=0.017 Score=57.01 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..-+|+|+|||||||||+...+.+.++
T Consensus 217 ~~GliLvtGpTGSGKTTtL~a~l~~~~ 243 (462)
T PRK10436 217 PQGLILVTGPTGSGKTVTLYSALQTLN 243 (462)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHhhC
Confidence 346899999999999999888777654
No 393
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.30 E-value=0.0039 Score=51.76 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=26.1
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..+++.+++|.||+|+|||||.+.|+-.+.
T Consensus 24 ~i~~G~~~~l~G~nGsGKstLl~~i~G~~~ 53 (171)
T cd03228 24 TIKPGEKVAIVGPSGSGKSTLLKLLLRLYD 53 (171)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 346778999999999999999999988764
No 394
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=96.30 E-value=0.017 Score=44.78 Aligned_cols=21 Identities=24% Similarity=0.243 Sum_probs=18.4
Q ss_pred EEEcCCccCHHHHHHHHHHhc
Q 045245 137 FVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 137 vIsGpTGSGKTTLA~~LAk~l 157 (251)
+++|.+|+|||||..+|....
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~ 21 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRR 21 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCc
Confidence 478999999999999998753
No 395
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.30 E-value=0.0037 Score=52.44 Aligned_cols=29 Identities=21% Similarity=0.193 Sum_probs=25.5
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++.+++|.||+|+|||||.+.|+..+.
T Consensus 23 i~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (182)
T cd03215 23 VRAGEIVGIAGLVGNGQTELAEALFGLRP 51 (182)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35678999999999999999999998764
No 396
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.29 E-value=0.0039 Score=52.18 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=25.4
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++.+++|.||+|||||||.+.|+....
T Consensus 22 i~~G~~~~l~G~nGsGKStLl~~i~G~~~ 50 (180)
T cd03214 22 IEAGEIVGILGPNGAGKSTLLKTLAGLLK 50 (180)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36778999999999999999999987653
No 397
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.29 E-value=0.0043 Score=63.31 Aligned_cols=35 Identities=31% Similarity=0.304 Sum_probs=30.0
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSN 165 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D 165 (251)
..++-++|.||+|+|||++|+.+|+.++...+..+
T Consensus 210 ~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~ 244 (733)
T TIGR01243 210 EPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISIN 244 (733)
T ss_pred CCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEe
Confidence 45678999999999999999999999987766554
No 398
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=96.29 E-value=0.0037 Score=47.14 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=21.3
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhc
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..|+++|++|||||||...+....
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999997654
No 399
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.28 E-value=0.0037 Score=54.63 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=25.0
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.++.+++|.||+|||||||++.|+....
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (255)
T PRK11300 29 REQEIVSLIGPNGAGKTTVFNCLTGFYK 56 (255)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCcC
Confidence 5678999999999999999999997653
No 400
>PRK08727 hypothetical protein; Validated
Probab=96.28 E-value=0.0094 Score=52.59 Aligned_cols=25 Identities=28% Similarity=0.493 Sum_probs=21.6
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
...++|.||+|+|||.|+.+++.+.
T Consensus 41 ~~~l~l~G~~G~GKThL~~a~~~~~ 65 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLALALCAAA 65 (233)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3569999999999999999997653
No 401
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=96.28 E-value=0.0036 Score=53.96 Aligned_cols=30 Identities=20% Similarity=0.368 Sum_probs=25.6
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
...++.+++|.||+|||||||++.|+..+.
T Consensus 29 ~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 29 HVESGQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred EEcCCeEEEEECCCCCCHHHHHHHHhCccC
Confidence 346778999999999999999999987653
No 402
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=96.28 E-value=0.0039 Score=54.02 Aligned_cols=28 Identities=21% Similarity=0.302 Sum_probs=24.8
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.++.+++|.||+|||||||.+.|+..+.
T Consensus 4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 31 (223)
T TIGR03771 4 DKGELLGLLGPNGAGKTTLLRAILGLIP 31 (223)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5678999999999999999999997653
No 403
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=96.28 E-value=0.0037 Score=53.62 Aligned_cols=30 Identities=23% Similarity=0.357 Sum_probs=25.8
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
...++.+++|.||+|+|||||++.|+-.+.
T Consensus 30 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 59 (224)
T TIGR02324 30 TVNAGECVALSGPSGAGKSTLLKSLYANYL 59 (224)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346778999999999999999999987653
No 404
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.28 E-value=0.004 Score=53.18 Aligned_cols=28 Identities=25% Similarity=0.315 Sum_probs=24.7
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.+++.+++|.||+|+|||||++.|+-..
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (221)
T cd03244 27 IKPGEKVGIVGRTGSGKSSLLLALFRLV 54 (221)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3667899999999999999999998754
No 405
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.28 E-value=0.011 Score=62.01 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=22.4
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..-+++.||+|+|||+++..||++..
T Consensus 199 ~~n~lL~G~pGvGKT~l~~~la~~i~ 224 (857)
T PRK10865 199 KNNPVLIGEPGVGKTAIVEGLAQRII 224 (857)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHhh
Confidence 34567889999999999999999873
No 406
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=96.28 E-value=0.015 Score=48.37 Aligned_cols=31 Identities=16% Similarity=0.229 Sum_probs=25.1
Q ss_pred EEEEcCCccCHHHHHHHHHHhc---C--CceEecCC
Q 045245 136 VFVMGATATGKTKLSIDLAIHF---S--GEAINSNK 166 (251)
Q Consensus 136 IvIsGpTGSGKTTLA~~LAk~l---~--~~VIS~Ds 166 (251)
+.++|++||||||++..++..+ + ..++.+|.
T Consensus 2 i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~ 37 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDP 37 (148)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC
Confidence 7889999999999999998876 2 34666674
No 407
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=96.27 E-value=0.0032 Score=52.85 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.7
Q ss_pred EEEEEcCCccCHHHHHHHHHHhc
Q 045245 135 VVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l 157 (251)
++.|+|++||||||++.+|.+.+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999875
No 408
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.27 E-value=0.004 Score=53.71 Aligned_cols=29 Identities=21% Similarity=0.309 Sum_probs=25.3
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++.+++|.||+|||||||.+.|+-...
T Consensus 24 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~ 52 (236)
T cd03253 24 IPAGKKVAIVGPSGSGKSTILRLLFRFYD 52 (236)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 36778999999999999999999987653
No 409
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.27 E-value=0.0039 Score=54.96 Aligned_cols=28 Identities=18% Similarity=0.407 Sum_probs=24.9
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.+++.+++|.||+|||||||++.|+-..
T Consensus 35 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 62 (259)
T PRK14274 35 IPENEVTAIIGPSGCGKSTFIKTLNLMI 62 (259)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4677899999999999999999998654
No 410
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.26 E-value=0.0043 Score=58.22 Aligned_cols=28 Identities=21% Similarity=0.256 Sum_probs=24.8
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFSG 159 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~ 159 (251)
-+..++++||+|+||||+|+.+|+.++.
T Consensus 37 ~~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 37 IHHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred CCeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 3467899999999999999999999864
No 411
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.26 E-value=0.0039 Score=54.66 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=23.9
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
..++.+++|.||+|||||||++.|+--
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14261 29 IPKNRVTALIGPSGCGKSTLLRCFNRM 55 (253)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 367789999999999999999999853
No 412
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.26 E-value=0.0046 Score=62.58 Aligned_cols=38 Identities=24% Similarity=0.384 Sum_probs=30.8
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc-------CCceEecCCcc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF-------SGEAINSNKIQ 168 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l-------~~~VIS~Ds~Q 168 (251)
.++.+|+|+||+|+||||++.+|+..+ ...++..|.+.
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyR 392 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQR 392 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeccccc
Confidence 457899999999999999999998643 24578888854
No 413
>PLN02842 nucleotide kinase
Probab=96.26 E-value=0.003 Score=63.20 Aligned_cols=31 Identities=23% Similarity=0.309 Sum_probs=28.0
Q ss_pred EEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 137 FVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 137 vIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
.|.||+||||||+|+.|+++++...|+++.+
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdL 31 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFGLVHISTGDL 31 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhCCCEEEccHH
Confidence 3789999999999999999999999987654
No 414
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=96.26 E-value=0.0038 Score=55.03 Aligned_cols=29 Identities=24% Similarity=0.393 Sum_probs=25.7
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++.+++|.||+|||||||++.|+-.+.
T Consensus 29 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 57 (258)
T PRK11701 29 LYPGEVLGIVGESGSGKTTLLNALSARLA 57 (258)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46778999999999999999999997653
No 415
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=96.26 E-value=0.0039 Score=52.97 Aligned_cols=29 Identities=21% Similarity=0.337 Sum_probs=25.4
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
+.+++.+++|.||+|+|||||++.|+-..
T Consensus 30 ~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 58 (207)
T cd03369 30 KVKAGEKIGIVGRTGAGKSTLILALFRFL 58 (207)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 44677899999999999999999998754
No 416
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=96.26 E-value=0.0039 Score=53.33 Aligned_cols=28 Identities=25% Similarity=0.354 Sum_probs=25.0
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..++.+++|.||+|||||||++.|+-..
T Consensus 21 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (213)
T TIGR01277 21 VADGEIVAIMGPSGAGKSTLLNLIAGFI 48 (213)
T ss_pred EeCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3677899999999999999999998765
No 417
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.26 E-value=0.004 Score=54.50 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=24.8
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..++.+++|.||+|+|||||.+.|+-.+
T Consensus 27 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 54 (253)
T PRK14267 27 IPQNGVFALMGPSGCGKSTLLRTFNRLL 54 (253)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3667899999999999999999998764
No 418
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.0031 Score=65.93 Aligned_cols=33 Identities=18% Similarity=0.309 Sum_probs=30.3
Q ss_pred ccCCCCeEEEEEcCCccCHHHHHHHHHHhcCCc
Q 045245 128 MNFNKKKVVFVMGATATGKTKLSIDLAIHFSGE 160 (251)
Q Consensus 128 ~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~ 160 (251)
++..++++++++||+|+|||++|+.+|+.+|-+
T Consensus 433 rgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk 465 (906)
T KOG2004|consen 433 RGSVQGKILCFVGPPGVGKTSIAKSIARALNRK 465 (906)
T ss_pred cccCCCcEEEEeCCCCCCcccHHHHHHHHhCCc
Confidence 677889999999999999999999999999843
No 419
>CHL00176 ftsH cell division protein; Validated
Probab=96.25 E-value=0.0051 Score=62.77 Aligned_cols=36 Identities=25% Similarity=0.210 Sum_probs=30.7
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNK 166 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds 166 (251)
..++-++|.||+|+|||++|+.+|.+.+.++++.+.
T Consensus 214 ~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~ 249 (638)
T CHL00176 214 KIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISG 249 (638)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccH
Confidence 345679999999999999999999999887776644
No 420
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.25 E-value=0.0049 Score=64.12 Aligned_cols=32 Identities=22% Similarity=0.364 Sum_probs=28.2
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNK 166 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds 166 (251)
.+++.||||+|||++|+.||+.++..++..|.
T Consensus 490 ~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~ 521 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDM 521 (758)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCcEEeec
Confidence 58999999999999999999999877766653
No 421
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.24 E-value=0.0046 Score=53.70 Aligned_cols=26 Identities=27% Similarity=0.250 Sum_probs=22.8
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
|..+.|+||+||||||+.+++.+.+.
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~ 26 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALR 26 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhC
Confidence 35789999999999999999988753
No 422
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=96.24 E-value=0.0038 Score=54.50 Aligned_cols=29 Identities=24% Similarity=0.253 Sum_probs=25.5
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
...++.+++|.||+|||||||++.|+-..
T Consensus 43 ~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~ 71 (236)
T cd03267 43 TIEKGEIVGFIGPNGAGKTTTLKILSGLL 71 (236)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 34677899999999999999999999765
No 423
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.23 E-value=0.01 Score=60.79 Aligned_cols=25 Identities=28% Similarity=0.489 Sum_probs=22.1
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
+.-+++.||+|+|||++++.||++.
T Consensus 203 ~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 3456899999999999999999987
No 424
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=96.23 E-value=0.02 Score=43.04 Aligned_cols=20 Identities=30% Similarity=0.302 Sum_probs=17.7
Q ss_pred EEcCCccCHHHHHHHHHHhc
Q 045245 138 VMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 138 IsGpTGSGKTTLA~~LAk~l 157 (251)
|+|++|||||||++.|....
T Consensus 1 i~G~~gsGKstl~~~l~~~~ 20 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQE 20 (163)
T ss_pred CcCCCCCCHHHHHHHHhCcc
Confidence 57999999999999998754
No 425
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=96.23 E-value=0.0043 Score=53.26 Aligned_cols=30 Identities=17% Similarity=0.356 Sum_probs=25.9
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
...++.+++|.||+|+|||||++.|+-...
T Consensus 36 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 65 (226)
T cd03248 36 TLHPGEVTALVGPSGSGKSTVVALLENFYQ 65 (226)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 346778999999999999999999987653
No 426
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.23 E-value=0.0041 Score=54.44 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=23.5
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHH
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAI 155 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk 155 (251)
..++.+++|.||+|||||||++.|+-
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~G 51 (250)
T PRK14245 26 IEEKSVVAFIGPSGCGKSTFLRLFNR 51 (250)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhh
Confidence 46778999999999999999999985
No 427
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=96.23 E-value=0.0039 Score=54.19 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=25.3
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
...++.+++|.||+|||||||++.|+-..
T Consensus 44 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 72 (224)
T cd03220 44 EVPRGERIGLIGRNGAGKSTLLRLLAGIY 72 (224)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34677899999999999999999998754
No 428
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.22 E-value=0.0042 Score=50.75 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=25.5
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.+++.+++|.||+|+|||||++.|+..+.
T Consensus 23 ~~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 36678999999999999999999988664
No 429
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=96.22 E-value=0.0042 Score=54.19 Aligned_cols=26 Identities=15% Similarity=0.331 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
.++.+++|.||+|||||||.+.|+-.
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 29 YPNEITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 56789999999999999999999854
No 430
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=96.22 E-value=0.0043 Score=53.30 Aligned_cols=30 Identities=27% Similarity=0.315 Sum_probs=26.0
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
...++.+++|.||+|+|||||.+.|+..+.
T Consensus 33 ~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 62 (214)
T PRK13543 33 HVDAGEALLVQGDNGAGKTTLLRVLAGLLH 62 (214)
T ss_pred EECCCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 346778999999999999999999997653
No 431
>PRK06526 transposase; Provisional
Probab=96.21 E-value=0.004 Score=56.44 Aligned_cols=26 Identities=42% Similarity=0.595 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.+.-++|.||+|+|||+||..|+.+.
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHH
Confidence 34579999999999999999998754
No 432
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.21 E-value=0.02 Score=56.60 Aligned_cols=25 Identities=24% Similarity=0.383 Sum_probs=22.1
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
-+++|+|||||||||+...+.+.++
T Consensus 243 GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 243 GIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred CEEEEEcCCCCCHHHHHHHHHhccC
Confidence 4899999999999999998877765
No 433
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.21 E-value=0.0043 Score=55.23 Aligned_cols=29 Identities=14% Similarity=0.140 Sum_probs=25.3
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++.+++|.||+|||||||.+.|+-.+.
T Consensus 32 i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 60 (269)
T PRK13648 32 IPKGQWTSIVGHNGSGKSTIAKLMIGIEK 60 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36778999999999999999999987653
No 434
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=96.21 E-value=0.0047 Score=52.39 Aligned_cols=25 Identities=36% Similarity=0.404 Sum_probs=23.0
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
+++.|+|++|||||||+.+|.+.+.
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~ 26 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALS 26 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 6899999999999999999998864
No 435
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=96.20 E-value=0.0041 Score=54.48 Aligned_cols=29 Identities=17% Similarity=0.201 Sum_probs=25.4
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
...++.+++|.||+|+|||||.+.|+-.+
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (252)
T TIGR03005 22 SVAAGEKVALIGPSGSGKSTILRILMTLE 50 (252)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34677899999999999999999998755
No 436
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.20 E-value=0.0045 Score=54.22 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.++.+++|.||+|||||||++.|+-..
T Consensus 29 ~~Ge~~~I~G~nGsGKSTLl~~i~G~~ 55 (251)
T PRK14244 29 YKREVTAFIGPSGCGKSTFLRCFNRMN 55 (251)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 567899999999999999999998653
No 437
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.20 E-value=0.0044 Score=54.17 Aligned_cols=27 Identities=22% Similarity=0.429 Sum_probs=24.0
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
..++.+++|.||+|||||||++.|+-.
T Consensus 28 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14255 28 FNQNEITALIGPSGCGKSTYLRTLNRM 54 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 356789999999999999999999864
No 438
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.19 E-value=0.0041 Score=53.23 Aligned_cols=29 Identities=24% Similarity=0.332 Sum_probs=25.5
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.+++.+++|.||+|+|||||++.|+-.+.
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 30 VKPGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred ECCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 36778999999999999999999987654
No 439
>PRK09183 transposase/IS protein; Provisional
Probab=96.19 E-value=0.0044 Score=55.95 Aligned_cols=26 Identities=27% Similarity=0.590 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
.++..++|.||+|+|||+||..|+..
T Consensus 100 ~~~~~v~l~Gp~GtGKThLa~al~~~ 125 (259)
T PRK09183 100 ERNENIVLLGPSGVGKTHLAIALGYE 125 (259)
T ss_pred hcCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 44567889999999999999999765
No 440
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.19 E-value=0.0046 Score=54.17 Aligned_cols=28 Identities=18% Similarity=0.250 Sum_probs=24.6
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..++.+++|.||+|||||||++.|+-..
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (251)
T PRK14270 27 IYENKITALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3677899999999999999999999643
No 441
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.19 E-value=0.0045 Score=54.96 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=24.1
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
..++.+++|.||+|||||||++.|+-.
T Consensus 44 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 70 (268)
T PRK14248 44 IEKHAVTALIGPSGCGKSTFLRSINRM 70 (268)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhc
Confidence 367789999999999999999999864
No 442
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=96.18 E-value=0.0042 Score=54.73 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=24.8
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..++.+++|.||+|||||||.+.|+-..
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~laGl~ 54 (258)
T PRK14241 27 IEPRSVTAFIGPSGCGKSTVLRTLNRMH 54 (258)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhccC
Confidence 3667899999999999999999999754
No 443
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.18 E-value=0.0043 Score=60.17 Aligned_cols=36 Identities=28% Similarity=0.341 Sum_probs=29.0
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhc-------CCceEecCCc
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHF-------SGEAINSNKI 167 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l-------~~~VIS~Ds~ 167 (251)
.+++++++||||+||||++..||..+ ...+|.+|.+
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~ 262 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTY 262 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc
Confidence 35799999999999999999887643 2458889985
No 444
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.18 E-value=0.0042 Score=57.39 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=23.9
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
..++-.+.|+|+||||||||++.|+--
T Consensus 30 i~~Ge~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 30 IERGETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred ecCCCEEEEEcCCCCCHHHHHHHHhcc
Confidence 367789999999999999999999853
No 445
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.18 E-value=0.0046 Score=54.27 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=25.3
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++.+++|.||+|||||||.+.|+..+.
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (254)
T PRK14273 30 ILKNSITALIGPSGCGKSTFLRTLNRMND 58 (254)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 36778999999999999999999987553
No 446
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.18 E-value=0.0049 Score=52.88 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=24.0
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
.+++.++.|+||+|+|||+++..++-.
T Consensus 16 i~~g~i~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 16 IETGSITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 467789999999999999999999744
No 447
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=96.18 E-value=0.0042 Score=53.78 Aligned_cols=22 Identities=23% Similarity=0.371 Sum_probs=20.5
Q ss_pred CeEEEEEcCCccCHHHHHHHHH
Q 045245 133 KKVVFVMGATATGKTKLSIDLA 154 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LA 154 (251)
+.+.+|+||+|+|||||...|.
T Consensus 23 ~~~~~i~GpNGsGKStll~ai~ 44 (243)
T cd03272 23 PKHNVVVGRNGSGKSNFFAAIR 44 (243)
T ss_pred CCcEEEECCCCCCHHHHHHHHH
Confidence 5699999999999999999997
No 448
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=96.18 E-value=0.019 Score=57.44 Aligned_cols=27 Identities=26% Similarity=0.276 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..-+|+|+|||||||||+...+.+..+
T Consensus 315 ~~Glilv~G~tGSGKTTtl~a~l~~~~ 341 (564)
T TIGR02538 315 PQGMVLVTGPTGSGKTVSLYTALNILN 341 (564)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhhC
Confidence 346899999999999999988877764
No 449
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.18 E-value=0.0046 Score=50.32 Aligned_cols=29 Identities=21% Similarity=0.358 Sum_probs=25.3
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.+++.+++|.||+|+|||||.+.|+-.++
T Consensus 22 i~~g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36668999999999999999999987654
No 450
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.18 E-value=0.0048 Score=51.23 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=25.4
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++.+++|.||+|+|||||.+.|+-...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 51 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLYK 51 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46778999999999999999999987653
No 451
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.18 E-value=0.0042 Score=52.96 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=20.3
Q ss_pred EEEEEcCCccCHHHHHHHHHHhc
Q 045245 135 VVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.|+|+|++|+||||+.+++.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 37899999999999999999887
No 452
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=96.17 E-value=0.0046 Score=53.51 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=24.8
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.++.+++|.||+|||||||++.|+-...
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (232)
T PRK10771 23 ERGERVAILGPSGAGKSTLLNLIAGFLT 50 (232)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5678999999999999999999987653
No 453
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.16 E-value=0.0053 Score=52.52 Aligned_cols=104 Identities=21% Similarity=0.180 Sum_probs=50.6
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc---C--CceEecCCcceecccccccCCCCc----cccCCCCeEEeccCCCCCc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF---S--GEAINSNKIQVYKGLDIATNKVTA----SERQGVPHHLLGFVDPEAD 201 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l---~--~~VIS~Ds~QvYk~lsIgTakP~~----eEr~gvpHhLVD~~d~~e~ 201 (251)
.++.-++|.||+|+|||.||..++.+. + ...++.+. +...+.-.-...+. .....++--.+|......
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~--L~~~l~~~~~~~~~~~~~~~l~~~dlLilDDlG~~~- 121 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASD--LLDELKQSRSDGSYEELLKRLKRVDLLILDDLGYEP- 121 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHH--HHHHHHCCHCCTTHCHHHHHHHTSSCEEEETCTSS--
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCc--eeccccccccccchhhhcCccccccEecccccceee-
Confidence 445679999999999999999998754 2 22333322 22222211111111 223455666677654332
Q ss_pred cCHHHHHHHHHHHHHHHHHcCCcEEEEcccHHHHHHHHcC
Q 045245 202 YPEEEFCEHALRAIDKIIENGHLHIIVGGSNTYIEALVED 241 (251)
Q Consensus 202 fsag~F~e~A~k~I~eI~~~Gk~PILVGGTglYlkaLl~g 241 (251)
.+ ....+...+.|+.-.. ++ |+|+ -|++-...+..-
T Consensus 122 ~~-~~~~~~l~~ii~~R~~-~~-~tIi-TSN~~~~~l~~~ 157 (178)
T PF01695_consen 122 LS-EWEAELLFEIIDERYE-RK-PTII-TSNLSPSELEEV 157 (178)
T ss_dssp ---HHHHHCTHHHHHHHHH-T--EEEE-EESS-HHHHHT-
T ss_pred ec-ccccccchhhhhHhhc-cc-CeEe-eCCCchhhHhhc
Confidence 11 1122333455555544 23 6555 355555554433
No 454
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=96.16 E-value=0.0057 Score=56.27 Aligned_cols=31 Identities=26% Similarity=0.240 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcCCceE
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAI 162 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VI 162 (251)
.+..+++.||+|+|||++|+.+|+.++...+
T Consensus 42 ~~~~vll~G~PG~gKT~la~~lA~~l~~~~~ 72 (329)
T COG0714 42 AGGHVLLEGPPGVGKTLLARALARALGLPFV 72 (329)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence 3568999999999999999999999985433
No 455
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.16 E-value=0.0048 Score=54.08 Aligned_cols=28 Identities=18% Similarity=0.373 Sum_probs=24.9
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.+++.+++|.||+|||||||++.|+-.+
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 27 FPENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 3677899999999999999999998765
No 456
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.16 E-value=0.0044 Score=55.24 Aligned_cols=29 Identities=28% Similarity=0.394 Sum_probs=25.1
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++.+++|.||+|||||||.+.|+-.+.
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (271)
T PRK13638 24 FSLSPVTGLVGANGCGKSTLFMNLSGLLR 52 (271)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 35678999999999999999999987553
No 457
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=96.15 E-value=0.0043 Score=55.10 Aligned_cols=28 Identities=32% Similarity=0.386 Sum_probs=24.9
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..++.+++|.||+|||||||++.|+-.+
T Consensus 34 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 61 (265)
T PRK10575 34 FPAGKVTGLIGHNGSGKSTLLKMLGRHQ 61 (265)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3677899999999999999999998765
No 458
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.15 E-value=0.0049 Score=53.87 Aligned_cols=28 Identities=21% Similarity=0.338 Sum_probs=24.6
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..++.+++|.||+|||||||++.|+-.+
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (251)
T PRK14251 27 FEEKELTALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 3667899999999999999999999654
No 459
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.15 E-value=0.0048 Score=55.16 Aligned_cols=30 Identities=17% Similarity=0.341 Sum_probs=25.9
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
...++.+++|.||+|||||||.+.|+-.+.
T Consensus 46 ~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~ 75 (269)
T cd03294 46 DVREGEIFVIMGLSGSGKSTLLRCINRLIE 75 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 346778999999999999999999987653
No 460
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.15 E-value=0.0044 Score=45.85 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=20.7
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcC
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.++|.||||+|||+++..++....
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~ 25 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELL 25 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHH
Confidence 478999999999999988887663
No 461
>COG3911 Predicted ATPase [General function prediction only]
Probab=96.15 E-value=0.0053 Score=54.06 Aligned_cols=29 Identities=34% Similarity=0.417 Sum_probs=24.9
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.+++.++++|+|.+|+|||||..+|+++=
T Consensus 5 ~~nR~~~fIltGgpGaGKTtLL~aLa~~G 33 (183)
T COG3911 5 PFNRHKRFILTGGPGAGKTTLLAALARAG 33 (183)
T ss_pred ccccceEEEEeCCCCCcHHHHHHHHHHcC
Confidence 34556899999999999999999998854
No 462
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=96.14 E-value=0.0048 Score=55.32 Aligned_cols=28 Identities=29% Similarity=0.202 Sum_probs=25.0
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..++.+++|.||+|||||||.+.|+-.+
T Consensus 35 i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~ 62 (257)
T PRK11247 35 IPAGQFVAVVGRSGCGKSTLLRLLAGLE 62 (257)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3677899999999999999999999765
No 463
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=96.14 E-value=0.0049 Score=54.29 Aligned_cols=30 Identities=17% Similarity=0.282 Sum_probs=26.1
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
...++.+++|.||+|+|||||++.|+-.+.
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 56 (257)
T PRK10619 27 QANAGDVISIIGSSGSGKSTFLRCINFLEK 56 (257)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346778999999999999999999998764
No 464
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=96.14 E-value=0.015 Score=48.67 Aligned_cols=25 Identities=28% Similarity=0.197 Sum_probs=22.7
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..|+|.|+.|+|||||..++.+...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~ 30 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEF 30 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcC
Confidence 6899999999999999999997664
No 465
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.14 E-value=0.0051 Score=53.71 Aligned_cols=28 Identities=21% Similarity=0.267 Sum_probs=24.8
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..++.+++|.||+|+|||||++.|+-..
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (249)
T PRK14253 26 IPARQVTALIGPSGCGKSTLLRCLNRMN 53 (249)
T ss_pred ecCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4677899999999999999999998654
No 466
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=96.13 E-value=0.0042 Score=47.70 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=19.1
Q ss_pred EEEEcCCccCHHHHHHHHHHh
Q 045245 136 VFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 136 IvIsGpTGSGKTTLA~~LAk~ 156 (251)
|+|+|++|+|||||.++|...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999999764
No 467
>PLN03025 replication factor C subunit; Provisional
Probab=96.12 E-value=0.0052 Score=56.32 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.2
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
+-+++.||+|+||||+|..+|+++.
T Consensus 35 ~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 35 PNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHh
Confidence 3478999999999999999999873
No 468
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=96.12 E-value=0.005 Score=54.77 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=24.8
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.+++.+++|.||+|||||||++.|+-.+
T Consensus 27 i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~ 54 (251)
T PRK09544 27 LKPGKILTLLGPNGAGKSTLVRVVLGLV 54 (251)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3677899999999999999999998754
No 469
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.12 E-value=0.0047 Score=56.96 Aligned_cols=32 Identities=28% Similarity=0.368 Sum_probs=26.5
Q ss_pred hhccCCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 126 ITMNFNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 126 ~~~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
++...++.++-+++||||+||||+.+.|=+..
T Consensus 26 i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 26 INLDIPKNKVTALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred CceeccCCceEEEECCCCcCHHHHHHHHHhhc
Confidence 34566888999999999999999999885543
No 470
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.11 E-value=0.005 Score=54.97 Aligned_cols=30 Identities=23% Similarity=0.357 Sum_probs=25.8
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
...++.+++|.||+|||||||.+.|+-...
T Consensus 31 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (271)
T PRK13632 31 EINEGEYVAILGHNGSGKSTISKILTGLLK 60 (271)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 346778999999999999999999987653
No 471
>PF13479 AAA_24: AAA domain
Probab=96.11 E-value=0.024 Score=49.29 Aligned_cols=31 Identities=26% Similarity=0.380 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSN 165 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D 165 (251)
++..++|.|++|+||||+|..+ =+..+|..|
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~---~k~l~id~E 32 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL---PKPLFIDTE 32 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC---CCeEEEEeC
Confidence 4568999999999999999988 123355554
No 472
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=96.11 E-value=0.0058 Score=52.50 Aligned_cols=28 Identities=25% Similarity=0.258 Sum_probs=24.6
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
...++|.|+|++|||||||..++.++++
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3568999999999999999999988754
No 473
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.11 E-value=0.0052 Score=53.77 Aligned_cols=27 Identities=19% Similarity=0.281 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.++.+++|.||+|||||||.+.|+-..
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (246)
T PRK14269 26 EQNKITALIGASGCGKSTFLRCFNRMN 52 (246)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 567899999999999999999998653
No 474
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=96.11 E-value=0.005 Score=53.37 Aligned_cols=23 Identities=17% Similarity=0.473 Sum_probs=21.1
Q ss_pred CeEEEEEcCCccCHHHHHHHHHH
Q 045245 133 KKVVFVMGATATGKTKLSIDLAI 155 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk 155 (251)
+++++|.||+|+|||||.+.++-
T Consensus 25 g~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 25 KNGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred CcEEEEECCCCCChHHHHHHHHH
Confidence 47999999999999999999974
No 475
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=96.11 E-value=0.0052 Score=53.66 Aligned_cols=27 Identities=19% Similarity=0.348 Sum_probs=24.0
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
..++.+++|.||+|||||||.+.|+-.
T Consensus 26 i~~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14240 26 IEENQVTALIGPSGCGKSTFLRTLNRM 52 (250)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcc
Confidence 356789999999999999999999864
No 476
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=96.11 E-value=0.015 Score=56.75 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=22.5
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.+.++|.||+|+|||+|+++++.++
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l 165 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHAL 165 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHH
Confidence 3678999999999999999999865
No 477
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.11 E-value=0.0067 Score=61.92 Aligned_cols=35 Identities=29% Similarity=0.329 Sum_probs=29.9
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSN 165 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D 165 (251)
..++-+++.||+|+|||++|+.+|.+.+...++.+
T Consensus 485 ~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~ 519 (733)
T TIGR01243 485 RPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVR 519 (733)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEe
Confidence 44566899999999999999999999988777654
No 478
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.11 E-value=0.0054 Score=52.52 Aligned_cols=28 Identities=14% Similarity=0.358 Sum_probs=24.9
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..++.+++|.||+|+|||||.+.|+-..
T Consensus 24 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 51 (218)
T cd03290 24 IPTGQLTMIVGQVGCGKSSLLLAILGEM 51 (218)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3667899999999999999999999765
No 479
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=96.11 E-value=0.005 Score=54.97 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=24.9
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..++.+++|.||+|||||||.+.|+-.+
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 57 (272)
T PRK15056 30 VPGGSIAALVGVNGSGKSTLFKALMGFV 57 (272)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3677899999999999999999998765
No 480
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=96.11 E-value=0.0043 Score=59.04 Aligned_cols=33 Identities=24% Similarity=0.383 Sum_probs=26.8
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcC------CceEecCCc
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFS------GEAINSNKI 167 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~------~~VIS~Ds~ 167 (251)
+++++|++|+||||+++.|++.+. ..+++.|.+
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~ 39 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDI 39 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEccccc
Confidence 368999999999999999997764 247777764
No 481
>PRK13764 ATPase; Provisional
Probab=96.10 E-value=0.0046 Score=62.98 Aligned_cols=28 Identities=21% Similarity=0.488 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
...+.|+|+|||||||||++++|++.++
T Consensus 255 ~~~~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 255 ERAEGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3346699999999999999999998875
No 482
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.10 E-value=0.0048 Score=61.32 Aligned_cols=37 Identities=24% Similarity=0.361 Sum_probs=30.4
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc----C---CceEecCCc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF----S---GEAINSNKI 167 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l----~---~~VIS~Ds~ 167 (251)
.++.+++++||||+||||++.+||..+ + ..++.+|.+
T Consensus 254 ~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~ 297 (484)
T PRK06995 254 DRGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSY 297 (484)
T ss_pred cCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCcc
Confidence 456899999999999999999999654 2 347888885
No 483
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=96.10 E-value=0.0051 Score=54.94 Aligned_cols=29 Identities=21% Similarity=0.312 Sum_probs=25.2
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
...++.+++|.||+|||||||++.|+-..
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 63 (269)
T PRK14259 35 DIPRGKVTALIGPSGCGKSTVLRSLNRMN 63 (269)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34677899999999999999999998754
No 484
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=96.10 E-value=0.0054 Score=54.85 Aligned_cols=37 Identities=16% Similarity=0.421 Sum_probs=33.6
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
.++++|+|.|++||||-|.+.+++++|+...+|++.+
T Consensus 6 ~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdL 42 (195)
T KOG3079|consen 6 DKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDL 42 (195)
T ss_pred cCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHH
Confidence 5678999999999999999999999999999998554
No 485
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=96.10 E-value=0.0052 Score=54.28 Aligned_cols=29 Identities=21% Similarity=0.382 Sum_probs=25.5
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++.+++|.||+|||||||.+.|+..+.
T Consensus 27 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 55 (262)
T PRK09984 27 IHHGEMVALLGPSGSGKSTLLRHLSGLIT 55 (262)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 46778999999999999999999997653
No 486
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=96.10 E-value=0.005 Score=54.85 Aligned_cols=29 Identities=24% Similarity=0.410 Sum_probs=25.7
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
+..++.+++|.||+|||||||++.|+-.+
T Consensus 42 ~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~ 70 (267)
T PRK14237 42 QFEKNKITALIGPSGSGKSTYLRSLNRMN 70 (267)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 44678899999999999999999999765
No 487
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=96.10 E-value=0.0051 Score=53.36 Aligned_cols=28 Identities=14% Similarity=0.242 Sum_probs=24.9
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..++.+++|.||+|+|||||.+.|+-.+
T Consensus 25 i~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 52 (242)
T TIGR03411 25 VDPGELRVIIGPNGAGKTTMMDVITGKT 52 (242)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3677899999999999999999999765
No 488
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=96.10 E-value=0.005 Score=55.00 Aligned_cols=29 Identities=17% Similarity=0.163 Sum_probs=25.2
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++.+++|.||+|||||||++.|+-.+.
T Consensus 30 i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~ 58 (280)
T PRK13649 30 IEDGSYTAFIGHTGSGKSTIMQLLNGLHV 58 (280)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36678999999999999999999987653
No 489
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.10 E-value=0.0064 Score=52.27 Aligned_cols=29 Identities=24% Similarity=0.572 Sum_probs=25.1
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..+++.++.|.||+|+|||+++..++...
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~ 47 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEA 47 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44778899999999999999999998643
No 490
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=96.09 E-value=0.0051 Score=54.84 Aligned_cols=28 Identities=25% Similarity=0.351 Sum_probs=24.9
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..++.+++|.||+|||||||++.|+-..
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 57 (269)
T PRK11831 30 VPRGKITAIMGPSGIGKTTLLRLIGGQI 57 (269)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3667899999999999999999999765
No 491
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=96.09 E-value=0.0056 Score=53.97 Aligned_cols=28 Identities=11% Similarity=0.213 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..+...+|+||+|||||||+.+|.--++
T Consensus 23 ~~~~~~~IvG~NGsGKStll~Ai~~ll~ 50 (251)
T cd03273 23 FDPQFNAITGLNGSGKSNILDAICFVLG 50 (251)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 3467899999999999999999986554
No 492
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=96.09 E-value=0.022 Score=46.09 Aligned_cols=23 Identities=17% Similarity=0.291 Sum_probs=20.5
Q ss_pred eEEEEEcCCccCHHHHHHHHHHh
Q 045245 134 KVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
..|++.|++|+|||||..++...
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~ 27 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDN 27 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999764
No 493
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=96.09 E-value=0.0052 Score=52.33 Aligned_cols=30 Identities=27% Similarity=0.214 Sum_probs=26.0
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
...++.+++|.|++|+|||||.+.|+....
T Consensus 22 ~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (201)
T cd03231 22 TLAAGEALQVTGPNGSGKTTLLRILAGLSP 51 (201)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 346788999999999999999999987653
No 494
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=96.09 E-value=0.0055 Score=47.84 Aligned_cols=22 Identities=36% Similarity=0.567 Sum_probs=19.9
Q ss_pred EEEEEcCCccCHHHHHHHHHHh
Q 045245 135 VVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~ 156 (251)
.|+|.|++|+|||||..++...
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999999864
No 495
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=96.09 E-value=0.0049 Score=53.77 Aligned_cols=27 Identities=37% Similarity=0.532 Sum_probs=24.0
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
..++.+++|.||+|||||||++.|+-.
T Consensus 30 i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 30 INKGEIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 366789999999999999999999874
No 496
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=96.08 E-value=0.0055 Score=54.60 Aligned_cols=28 Identities=21% Similarity=0.231 Sum_probs=25.0
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..++.+++|.||+|||||||.+.|+-..
T Consensus 42 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 69 (267)
T PRK14235 42 IPEKTVTAFIGPSGCGKSTFLRCLNRMN 69 (267)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4677899999999999999999998755
No 497
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=96.08 E-value=0.0055 Score=48.67 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=19.7
Q ss_pred EEEEEcCCccCHHHHHHHHHHh
Q 045245 135 VVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~ 156 (251)
.|+|.|++|||||||+.++...
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~ 23 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5889999999999999999753
No 498
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=96.08 E-value=0.0048 Score=53.49 Aligned_cols=28 Identities=32% Similarity=0.382 Sum_probs=24.8
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..++.+++|.||+|||||||.+.|+-.+
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 55 (237)
T PRK11614 28 INQGEIVTLIGANGAGKTTLLGTLCGDP 55 (237)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCCC
Confidence 3677899999999999999999998755
No 499
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=96.08 E-value=0.0052 Score=54.48 Aligned_cols=28 Identities=25% Similarity=0.409 Sum_probs=25.0
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..++.+++|.||+|||||||.+.|+-..
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 52 (258)
T PRK13548 25 LRPGEVVAILGPNGAGKSTLLRALSGEL 52 (258)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3677899999999999999999999765
No 500
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=96.08 E-value=0.022 Score=46.55 Aligned_cols=21 Identities=24% Similarity=0.305 Sum_probs=19.2
Q ss_pred EEEEEcCCccCHHHHHHHHHH
Q 045245 135 VVFVMGATATGKTKLSIDLAI 155 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk 155 (251)
.|+|+|++|||||||..++..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~ 22 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLT 22 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999874
Done!