Query 045245
Match_columns 251
No_of_seqs 131 out of 1361
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 19:54:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045245.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045245hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3foz_A TRNA delta(2)-isopenten 100.0 2.3E-35 8E-40 272.0 10.7 112 131-242 8-119 (316)
2 3exa_A TRNA delta(2)-isopenten 100.0 3.6E-35 1.2E-39 271.4 11.7 118 132-249 2-126 (322)
3 3eph_A TRNA isopentenyltransfe 100.0 6.1E-33 2.1E-37 263.2 10.5 111 133-243 2-112 (409)
4 3a8t_A Adenylate isopentenyltr 100.0 1.2E-31 4.1E-36 248.8 12.6 112 131-242 38-150 (339)
5 3crm_A TRNA delta(2)-isopenten 100.0 1.2E-29 4.1E-34 233.4 11.2 119 132-250 4-128 (323)
6 3d3q_A TRNA delta(2)-isopenten 99.9 5.3E-27 1.8E-31 217.4 13.2 110 133-242 7-116 (340)
7 2ze6_A Isopentenyl transferase 99.9 8.2E-22 2.8E-26 171.2 11.5 107 134-241 2-109 (253)
8 1ex7_A Guanylate kinase; subst 99.4 6.5E-15 2.2E-19 125.2 -0.2 96 134-238 2-107 (186)
9 3ney_A 55 kDa erythrocyte memb 99.4 9.3E-14 3.2E-18 119.5 1.1 93 129-229 15-117 (197)
10 2qmh_A HPR kinase/phosphorylas 99.3 1.7E-13 6E-18 120.0 0.9 74 131-211 32-112 (205)
11 3tau_A Guanylate kinase, GMP k 99.3 1.8E-13 6.2E-18 114.3 -0.8 100 131-238 6-118 (208)
12 1kgd_A CASK, peripheral plasma 99.2 2.5E-12 8.6E-17 104.9 0.6 91 131-229 3-103 (180)
13 2qor_A Guanylate kinase; phosp 99.1 1.1E-11 3.7E-16 102.5 0.4 93 129-229 8-110 (204)
14 1kjw_A Postsynaptic density pr 98.8 2E-10 7E-15 103.4 -1.1 100 119-229 91-201 (295)
15 3tr0_A Guanylate kinase, GMP k 98.8 4.2E-10 1.4E-14 91.2 0.8 90 131-229 5-104 (205)
16 3a00_A Guanylate kinase, GMP k 98.8 4.3E-10 1.5E-14 91.8 -0.7 87 133-227 1-97 (186)
17 3trf_A Shikimate kinase, SK; a 98.7 3.6E-09 1.2E-13 84.8 3.1 36 132-167 4-39 (185)
18 1s96_A Guanylate kinase, GMP k 98.7 1.6E-09 5.6E-14 93.0 0.1 93 129-228 12-114 (219)
19 3tvt_A Disks large 1 tumor sup 98.7 1.1E-09 3.9E-14 99.0 -1.3 90 128-228 95-195 (292)
20 1lvg_A Guanylate kinase, GMP k 98.7 2.4E-09 8.2E-14 89.0 -0.1 90 131-228 2-101 (198)
21 2xkx_A Disks large homolog 4; 98.5 3.1E-08 1E-12 98.3 2.8 92 128-230 526-628 (721)
22 1qhx_A CPT, protein (chloramph 98.5 2.6E-07 9E-12 73.2 7.4 35 133-167 3-39 (178)
23 3lnc_A Guanylate kinase, GMP k 98.5 7.6E-08 2.6E-12 80.6 4.4 99 129-236 23-135 (231)
24 1ly1_A Polynucleotide kinase; 98.5 1E-07 3.5E-12 74.9 4.3 35 133-167 2-37 (181)
25 2rhm_A Putative kinase; P-loop 98.4 1.5E-07 5E-12 75.2 4.5 38 130-167 2-39 (193)
26 2j41_A Guanylate kinase; GMP, 98.4 3.1E-08 1.1E-12 80.0 -0.0 91 131-230 4-105 (207)
27 1qf9_A UMP/CMP kinase, protein 98.4 1.9E-07 6.6E-12 73.9 4.5 37 131-167 4-40 (194)
28 3kb2_A SPBC2 prophage-derived 98.4 2.2E-07 7.5E-12 72.5 4.6 34 134-167 2-35 (173)
29 3t61_A Gluconokinase; PSI-biol 98.4 2.1E-07 7.1E-12 76.1 4.4 37 131-167 16-52 (202)
30 1nks_A Adenylate kinase; therm 98.4 9.6E-08 3.3E-12 75.7 1.9 32 134-165 2-38 (194)
31 2c95_A Adenylate kinase 1; tra 98.4 2.1E-07 7.1E-12 74.5 3.6 38 130-167 6-43 (196)
32 1tev_A UMP-CMP kinase; ploop, 98.4 2.6E-07 9E-12 73.3 4.1 36 132-167 2-37 (196)
33 1knq_A Gluconate kinase; ALFA/ 98.3 4.2E-07 1.4E-11 72.2 5.2 38 130-167 5-42 (175)
34 3vaa_A Shikimate kinase, SK; s 98.3 3.1E-07 1.1E-11 75.4 4.1 39 129-167 21-59 (199)
35 1gvn_B Zeta; postsegregational 98.3 1.9E-07 6.4E-12 82.7 2.6 85 130-229 30-117 (287)
36 2bwj_A Adenylate kinase 5; pho 98.3 1.5E-07 5.3E-12 75.4 1.8 37 131-167 10-46 (199)
37 1kag_A SKI, shikimate kinase I 98.3 3.4E-07 1.2E-11 72.3 3.6 36 132-167 3-38 (173)
38 1via_A Shikimate kinase; struc 98.3 2.4E-07 8.1E-12 74.1 2.7 34 134-167 5-38 (175)
39 3cm0_A Adenylate kinase; ATP-b 98.3 3.4E-07 1.2E-11 73.1 3.6 37 131-167 2-38 (186)
40 1ukz_A Uridylate kinase; trans 98.3 5.2E-07 1.8E-11 73.4 4.6 38 130-167 12-49 (203)
41 1uf9_A TT1252 protein; P-loop, 98.3 4E-07 1.4E-11 73.2 3.7 37 130-167 5-41 (203)
42 2cdn_A Adenylate kinase; phosp 98.3 5.5E-07 1.9E-11 73.5 4.5 38 130-167 17-54 (201)
43 2iyv_A Shikimate kinase, SK; t 98.3 3.8E-07 1.3E-11 73.1 3.2 34 134-167 3-36 (184)
44 1y63_A LMAJ004144AAA protein; 98.3 5.2E-07 1.8E-11 73.4 4.1 39 129-167 6-45 (184)
45 3lw7_A Adenylate kinase relate 98.3 5.2E-07 1.8E-11 69.4 3.8 33 134-167 2-34 (179)
46 1z6g_A Guanylate kinase; struc 98.3 9.9E-07 3.4E-11 74.4 5.6 58 130-195 20-77 (218)
47 1e6c_A Shikimate kinase; phosp 98.2 4.3E-07 1.5E-11 71.5 2.9 34 134-167 3-36 (173)
48 1uj2_A Uridine-cytidine kinase 98.2 8.1E-07 2.8E-11 75.8 4.8 42 129-172 18-69 (252)
49 1cke_A CK, MSSA, protein (cyti 98.2 6E-07 2.1E-11 73.8 3.7 37 132-168 4-40 (227)
50 3iij_A Coilin-interacting nucl 98.2 7.1E-07 2.4E-11 71.4 3.9 37 131-167 9-45 (180)
51 1zd8_A GTP:AMP phosphotransfer 98.2 5.8E-07 2E-11 75.1 3.4 37 131-167 5-41 (227)
52 4e22_A Cytidylate kinase; P-lo 98.2 1.2E-06 4.2E-11 75.3 5.5 37 131-167 25-61 (252)
53 4eun_A Thermoresistant glucoki 98.2 1.1E-06 3.8E-11 72.2 4.8 38 130-167 26-63 (200)
54 3zvl_A Bifunctional polynucleo 98.2 1.9E-06 6.5E-11 80.0 6.8 39 129-167 254-292 (416)
55 2wwf_A Thymidilate kinase, put 98.2 4.3E-07 1.5E-11 73.7 2.1 37 129-165 6-42 (212)
56 2p5t_B PEZT; postsegregational 98.2 2.2E-06 7.4E-11 73.5 6.5 39 129-167 28-68 (253)
57 3asz_A Uridine kinase; cytidin 98.2 9.3E-07 3.2E-11 72.3 4.0 39 129-167 2-42 (211)
58 1kht_A Adenylate kinase; phosp 98.2 7.2E-07 2.5E-11 70.7 3.2 34 133-166 3-41 (192)
59 3tlx_A Adenylate kinase 2; str 98.2 1.1E-06 3.8E-11 75.2 4.4 38 130-167 26-63 (243)
60 3fdi_A Uncharacterized protein 98.2 3.9E-06 1.3E-10 70.6 7.3 34 130-163 3-36 (201)
61 2qt1_A Nicotinamide riboside k 98.1 1.5E-06 5.1E-11 71.2 4.4 37 131-167 19-56 (207)
62 1aky_A Adenylate kinase; ATP:A 98.1 1.3E-06 4.5E-11 72.3 4.1 36 132-167 3-38 (220)
63 3fb4_A Adenylate kinase; psych 98.1 1.3E-06 4.4E-11 71.7 3.9 33 135-167 2-34 (216)
64 3umf_A Adenylate kinase; rossm 98.1 1.6E-06 5.5E-11 75.0 4.7 39 128-166 24-62 (217)
65 3dl0_A Adenylate kinase; phosp 98.1 1.4E-06 4.9E-11 71.6 4.0 33 135-167 2-34 (216)
66 1znw_A Guanylate kinase, GMP k 98.1 3.2E-06 1.1E-10 69.9 6.1 56 130-194 17-72 (207)
67 3r20_A Cytidylate kinase; stru 98.1 3.6E-06 1.2E-10 73.8 6.5 40 131-172 7-46 (233)
68 1zuh_A Shikimate kinase; alpha 98.1 1.6E-06 5.4E-11 68.6 3.9 35 133-167 7-41 (168)
69 3ake_A Cytidylate kinase; CMP 98.1 1.4E-06 4.7E-11 70.3 3.5 34 134-167 3-36 (208)
70 1vht_A Dephospho-COA kinase; s 98.1 1.5E-06 5.1E-11 71.7 3.7 35 132-167 3-37 (218)
71 2pt5_A Shikimate kinase, SK; a 98.1 1.8E-06 6E-11 67.8 3.9 33 135-167 2-34 (168)
72 1zak_A Adenylate kinase; ATP:A 98.1 1.2E-06 4E-11 72.8 2.9 37 131-167 3-39 (222)
73 2if2_A Dephospho-COA kinase; a 98.1 1.8E-06 6.3E-11 70.1 3.4 33 134-167 2-34 (204)
74 3a4m_A L-seryl-tRNA(SEC) kinas 98.1 8E-06 2.7E-10 70.4 7.4 37 131-167 2-43 (260)
75 2v54_A DTMP kinase, thymidylat 98.0 2.8E-06 9.7E-11 68.5 4.1 34 131-164 2-36 (204)
76 3be4_A Adenylate kinase; malar 98.0 2.5E-06 8.5E-11 71.1 3.8 35 133-167 5-39 (217)
77 2pbr_A DTMP kinase, thymidylat 98.0 3.2E-06 1.1E-10 67.1 4.2 31 135-165 2-35 (195)
78 1a7j_A Phosphoribulokinase; tr 98.0 1.3E-06 4.3E-11 77.7 1.9 37 132-168 4-45 (290)
79 2vli_A Antibiotic resistance p 98.0 2.7E-06 9.4E-11 67.4 3.5 31 132-162 4-34 (183)
80 3tsz_A Tight junction protein 98.0 4.2E-06 1.4E-10 78.1 5.2 77 120-228 219-295 (391)
81 1nn5_A Similar to deoxythymidy 98.0 1.5E-06 5.2E-11 70.4 1.9 31 130-160 6-36 (215)
82 1jjv_A Dephospho-COA kinase; P 98.0 2.7E-06 9.3E-11 69.4 3.4 33 134-167 3-35 (206)
83 2grj_A Dephospho-COA kinase; T 98.0 2.8E-06 9.5E-11 71.6 3.5 39 129-167 8-46 (192)
84 1ak2_A Adenylate kinase isoenz 98.0 3.7E-06 1.3E-10 70.7 4.2 37 131-167 14-50 (233)
85 1zp6_A Hypothetical protein AT 98.0 5.9E-06 2E-10 66.1 4.7 30 131-160 7-36 (191)
86 1e4v_A Adenylate kinase; trans 98.0 4.4E-06 1.5E-10 69.1 3.9 33 135-167 2-34 (214)
87 3uie_A Adenylyl-sulfate kinase 97.9 5E-06 1.7E-10 68.2 3.9 33 126-158 18-50 (200)
88 2bbw_A Adenylate kinase 4, AK4 97.9 3.9E-06 1.3E-10 71.0 3.3 37 131-167 25-61 (246)
89 1ltq_A Polynucleotide kinase; 97.9 4.7E-06 1.6E-10 71.8 3.5 35 133-167 2-37 (301)
90 2f6r_A COA synthase, bifunctio 97.9 5E-06 1.7E-10 73.0 3.7 36 131-167 73-108 (281)
91 3shw_A Tight junction protein 97.9 4.1E-06 1.4E-10 80.7 3.1 76 121-228 212-287 (468)
92 2plr_A DTMP kinase, probable t 97.9 7.2E-06 2.5E-10 65.9 4.1 28 132-159 3-30 (213)
93 2xb4_A Adenylate kinase; ATP-b 97.9 7.4E-06 2.5E-10 68.8 3.8 33 135-167 2-34 (223)
94 3sr0_A Adenylate kinase; phosp 97.9 9.4E-06 3.2E-10 69.1 4.3 32 135-166 2-33 (206)
95 3c8u_A Fructokinase; YP_612366 97.9 7.5E-06 2.6E-10 67.7 3.5 39 130-168 19-62 (208)
96 2h92_A Cytidylate kinase; ross 97.9 6.3E-06 2.2E-10 67.6 3.0 35 133-167 3-37 (219)
97 2jeo_A Uridine-cytidine kinase 97.8 1.4E-05 4.9E-10 67.8 5.0 42 130-173 22-73 (245)
98 1q3t_A Cytidylate kinase; nucl 97.8 9E-06 3.1E-10 68.5 3.7 37 131-167 14-50 (236)
99 2jaq_A Deoxyguanosine kinase; 97.8 1.3E-05 4.5E-10 64.0 4.2 28 135-162 2-29 (205)
100 2kjq_A DNAA-related protein; s 97.8 6.7E-05 2.3E-09 60.3 8.3 83 132-228 35-121 (149)
101 2pez_A Bifunctional 3'-phospho 97.8 1.6E-05 5.6E-10 63.6 4.6 36 131-166 3-41 (179)
102 2z0h_A DTMP kinase, thymidylat 97.8 1.4E-05 4.9E-10 63.8 4.2 30 135-164 2-34 (197)
103 3hdt_A Putative kinase; struct 97.8 3E-05 1E-09 67.0 6.4 35 133-167 14-48 (223)
104 3nwj_A ATSK2; P loop, shikimat 97.8 9.6E-06 3.3E-10 71.2 3.4 35 133-167 48-82 (250)
105 2bdt_A BH3686; alpha-beta prot 97.8 1.2E-05 3.9E-10 64.8 3.4 35 133-167 2-37 (189)
106 3bos_A Putative DNA replicatio 97.7 9.4E-05 3.2E-09 59.8 8.2 91 132-231 51-146 (242)
107 3t15_A Ribulose bisphosphate c 97.7 2.6E-05 8.8E-10 68.6 4.4 36 130-165 33-68 (293)
108 2yvu_A Probable adenylyl-sulfa 97.7 2.2E-05 7.5E-10 63.2 3.3 29 130-158 10-38 (186)
109 1sq5_A Pantothenate kinase; P- 97.7 3.3E-05 1.1E-09 68.5 4.6 38 131-168 78-122 (308)
110 4edh_A DTMP kinase, thymidylat 97.6 1.8E-05 6E-10 67.7 2.5 30 129-158 2-31 (213)
111 1odf_A YGR205W, hypothetical 3 97.6 3.5E-05 1.2E-09 68.8 4.5 39 130-168 28-74 (290)
112 1m7g_A Adenylylsulfate kinase; 97.6 2.7E-05 9.2E-10 64.4 3.0 30 129-158 21-50 (211)
113 1jbk_A CLPB protein; beta barr 97.6 6.6E-05 2.2E-09 57.8 5.0 27 131-157 41-67 (195)
114 2qz4_A Paraplegin; AAA+, SPG7, 97.6 5.2E-05 1.8E-09 63.1 4.7 35 131-165 37-71 (262)
115 2p65_A Hypothetical protein PF 97.6 5.5E-05 1.9E-09 58.6 4.5 27 131-157 41-67 (187)
116 3tqc_A Pantothenate kinase; bi 97.6 5.1E-05 1.7E-09 69.3 4.6 39 130-168 89-134 (321)
117 3lv8_A DTMP kinase, thymidylat 97.6 2.4E-05 8.1E-10 68.4 2.3 32 127-158 21-52 (236)
118 1lv7_A FTSH; alpha/beta domain 97.6 6.8E-05 2.3E-09 63.3 4.9 34 133-166 45-78 (257)
119 3h4m_A Proteasome-activating n 97.5 7.9E-05 2.7E-09 63.3 5.2 36 131-166 49-84 (285)
120 1rz3_A Hypothetical protein rb 97.5 8.6E-05 2.9E-09 61.1 5.0 39 129-167 18-61 (201)
121 3v9p_A DTMP kinase, thymidylat 97.5 2.5E-05 8.4E-10 67.9 1.8 91 131-228 23-118 (227)
122 1d2n_A N-ethylmaleimide-sensit 97.5 8.5E-05 2.9E-09 63.3 4.8 35 130-164 61-95 (272)
123 3cf0_A Transitional endoplasmi 97.5 0.00011 3.7E-09 64.5 5.2 37 130-166 46-82 (301)
124 3b9p_A CG5977-PA, isoform A; A 97.5 9.9E-05 3.4E-09 63.2 4.6 33 132-164 53-85 (297)
125 3ec2_A DNA replication protein 97.4 6.5E-05 2.2E-09 60.1 3.2 27 131-157 36-62 (180)
126 1gtv_A TMK, thymidylate kinase 97.4 4E-05 1.4E-09 62.1 1.9 25 134-158 1-25 (214)
127 1ofh_A ATP-dependent HSL prote 97.4 8.9E-05 3E-09 62.9 4.0 34 132-165 49-82 (310)
128 1p5z_B DCK, deoxycytidine kina 97.4 5E-05 1.7E-09 64.9 2.3 36 128-163 19-55 (263)
129 1l8q_A Chromosomal replication 97.4 0.00012 4.2E-09 63.9 4.4 97 132-231 36-139 (324)
130 3hws_A ATP-dependent CLP prote 97.4 0.00011 3.9E-09 65.5 4.3 35 132-166 50-84 (363)
131 4gp7_A Metallophosphoesterase; 97.4 6.8E-05 2.3E-09 60.6 2.6 34 131-166 7-40 (171)
132 3syl_A Protein CBBX; photosynt 97.3 0.00022 7.7E-09 61.0 5.4 27 131-157 65-91 (309)
133 3gmt_A Adenylate kinase; ssgci 97.3 0.00012 4.2E-09 64.3 3.6 36 132-167 7-42 (230)
134 4eaq_A DTMP kinase, thymidylat 97.3 0.00016 5.6E-09 61.7 4.3 28 131-158 24-51 (229)
135 3eie_A Vacuolar protein sortin 97.3 0.00021 7.2E-09 63.0 5.0 35 131-165 49-83 (322)
136 1um8_A ATP-dependent CLP prote 97.3 0.00017 5.9E-09 64.5 4.3 36 132-167 71-106 (376)
137 3aez_A Pantothenate kinase; tr 97.3 0.00016 5.6E-09 65.1 3.9 38 130-167 87-131 (312)
138 3pxi_A Negative regulator of g 97.2 0.00061 2.1E-08 67.1 8.1 108 135-251 523-654 (758)
139 2r62_A Cell division protease 97.2 8.2E-05 2.8E-09 62.8 1.6 33 133-165 44-76 (268)
140 1ixz_A ATP-dependent metallopr 97.2 0.00029 9.8E-09 59.3 4.9 31 135-165 51-81 (254)
141 2ocp_A DGK, deoxyguanosine kin 97.2 0.00027 9.3E-09 59.4 4.7 28 132-159 1-28 (241)
142 3pfi_A Holliday junction ATP-d 97.2 0.00022 7.6E-09 62.1 4.3 34 131-164 53-86 (338)
143 1njg_A DNA polymerase III subu 97.2 0.00021 7.1E-09 56.6 3.6 26 133-158 45-70 (250)
144 1tue_A Replication protein E1; 97.2 0.00021 7.1E-09 62.9 3.9 38 128-165 53-90 (212)
145 4b4t_K 26S protease regulatory 97.2 0.00027 9.2E-09 67.1 4.9 39 129-167 202-240 (428)
146 4b4t_M 26S protease regulatory 97.2 0.00028 9.7E-09 67.1 5.0 38 129-166 211-248 (434)
147 1sxj_A Activator 1 95 kDa subu 97.2 0.00032 1.1E-08 66.4 5.3 36 132-167 76-111 (516)
148 2x8a_A Nuclear valosin-contain 97.2 0.0003 1E-08 61.6 4.6 31 136-166 47-77 (274)
149 2w58_A DNAI, primosome compone 97.2 0.00025 8.4E-09 57.4 3.6 24 134-157 55-78 (202)
150 2ehv_A Hypothetical protein PH 97.2 0.00022 7.5E-09 58.6 3.3 24 131-154 28-51 (251)
151 1xwi_A SKD1 protein; VPS4B, AA 97.2 0.00034 1.2E-08 62.3 4.8 34 131-164 43-77 (322)
152 3d8b_A Fidgetin-like protein 1 97.2 0.00034 1.2E-08 62.9 4.8 35 131-165 115-149 (357)
153 1c9k_A COBU, adenosylcobinamid 97.1 0.00027 9.4E-09 60.0 3.8 28 136-164 2-29 (180)
154 4b4t_L 26S protease subunit RP 97.1 0.00032 1.1E-08 66.8 4.7 38 129-166 211-248 (437)
155 4a74_A DNA repair and recombin 97.1 0.00026 8.8E-09 57.5 3.5 27 130-156 22-48 (231)
156 2c9o_A RUVB-like 1; hexameric 97.1 0.00042 1.5E-08 64.4 5.2 39 131-169 61-101 (456)
157 2chg_A Replication factor C sm 97.1 0.00029 9.9E-09 55.4 3.4 23 135-157 40-62 (226)
158 3vfd_A Spastin; ATPase, microt 97.1 0.00044 1.5E-08 62.5 5.0 35 132-166 147-181 (389)
159 4fcw_A Chaperone protein CLPB; 97.1 0.00036 1.2E-08 59.6 4.2 25 134-158 48-72 (311)
160 2axn_A 6-phosphofructo-2-kinas 97.1 0.00028 9.4E-09 67.9 3.8 37 131-167 33-74 (520)
161 2qp9_X Vacuolar protein sortin 97.1 0.0004 1.4E-08 62.7 4.6 35 131-165 82-116 (355)
162 3uk6_A RUVB-like 2; hexameric 97.1 0.00039 1.3E-08 61.0 4.4 30 130-159 67-96 (368)
163 1iy2_A ATP-dependent metallopr 97.1 0.00049 1.7E-08 59.1 4.9 31 135-165 75-105 (278)
164 3n70_A Transport activator; si 97.1 0.00031 1.1E-08 55.1 3.4 27 131-157 22-48 (145)
165 2vp4_A Deoxynucleoside kinase; 97.1 0.0003 1E-08 59.1 3.4 27 130-156 17-43 (230)
166 1x6v_B Bifunctional 3'-phospho 97.1 0.00048 1.6E-08 68.6 5.3 36 131-166 50-88 (630)
167 2v1u_A Cell division control p 97.1 0.00029 1E-08 61.0 3.3 27 131-157 42-68 (387)
168 1svm_A Large T antigen; AAA+ f 97.1 0.00045 1.5E-08 64.3 4.8 36 128-163 164-199 (377)
169 2qby_B CDC6 homolog 3, cell di 97.1 0.00048 1.6E-08 60.3 4.6 27 131-157 43-69 (384)
170 4i1u_A Dephospho-COA kinase; s 97.0 0.00044 1.5E-08 59.9 4.3 35 132-167 8-42 (210)
171 4b4t_J 26S protease regulatory 97.0 0.0004 1.4E-08 65.9 4.4 38 129-166 178-215 (405)
172 2qby_A CDC6 homolog 1, cell di 97.0 0.0004 1.4E-08 60.0 4.0 35 131-165 43-83 (386)
173 2w0m_A SSO2452; RECA, SSPF, un 97.0 0.00038 1.3E-08 56.1 3.5 27 131-157 21-47 (235)
174 1in4_A RUVB, holliday junction 97.0 0.00042 1.4E-08 61.7 4.0 30 132-161 50-79 (334)
175 2eyu_A Twitching motility prot 97.0 0.00042 1.4E-08 60.7 4.0 28 130-157 22-49 (261)
176 3ld9_A DTMP kinase, thymidylat 97.0 0.00044 1.5E-08 60.0 4.0 37 123-159 11-47 (223)
177 1hqc_A RUVB; extended AAA-ATPa 97.0 0.00035 1.2E-08 60.1 3.3 31 132-162 37-67 (324)
178 2cvh_A DNA repair and recombin 97.0 0.00045 1.5E-08 55.8 3.7 29 130-158 17-45 (220)
179 1ye8_A Protein THEP1, hypothet 97.0 0.00042 1.4E-08 57.2 3.5 25 135-159 2-26 (178)
180 2v9p_A Replication protein E1; 97.0 0.00063 2.1E-08 61.8 4.7 38 126-163 119-156 (305)
181 3u61_B DNA polymerase accessor 96.9 0.00055 1.9E-08 59.4 4.0 35 131-165 46-80 (324)
182 4b4t_I 26S protease regulatory 96.9 0.00073 2.5E-08 64.9 5.1 39 129-167 212-250 (437)
183 4b4t_H 26S protease regulatory 96.9 0.00062 2.1E-08 65.9 4.6 38 129-166 239-276 (467)
184 3co5_A Putative two-component 96.9 0.00023 7.8E-09 55.9 1.2 32 133-165 27-58 (143)
185 1fnn_A CDC6P, cell division co 96.9 0.00068 2.3E-08 59.1 4.3 24 134-157 45-68 (389)
186 2z4s_A Chromosomal replication 96.9 0.00077 2.6E-08 62.9 4.9 25 133-157 130-154 (440)
187 1htw_A HI0065; nucleotide-bind 96.9 0.00078 2.7E-08 55.0 4.4 30 129-158 29-58 (158)
188 1np6_A Molybdopterin-guanine d 96.9 0.00064 2.2E-08 56.6 3.7 26 132-157 5-30 (174)
189 1xjc_A MOBB protein homolog; s 96.9 0.00062 2.1E-08 57.1 3.6 26 132-157 3-28 (169)
190 1g41_A Heat shock protein HSLU 96.9 0.00062 2.1E-08 65.1 4.0 34 133-166 50-83 (444)
191 3p32_A Probable GTPase RV1496/ 96.9 0.0053 1.8E-07 55.3 9.8 37 130-166 76-117 (355)
192 2zan_A Vacuolar protein sortin 96.9 0.00095 3.2E-08 62.2 5.1 35 131-165 165-200 (444)
193 1n0w_A DNA repair protein RAD5 96.8 0.0006 2.1E-08 55.9 3.3 27 130-156 21-47 (243)
194 3tmk_A Thymidylate kinase; pho 96.8 0.00077 2.6E-08 58.1 4.1 29 131-159 3-31 (216)
195 3tif_A Uncharacterized ABC tra 96.8 0.00056 1.9E-08 58.8 3.2 30 129-158 27-56 (235)
196 1bif_A 6-phosphofructo-2-kinas 96.8 0.00034 1.2E-08 65.4 1.7 29 131-159 37-65 (469)
197 3dm5_A SRP54, signal recogniti 96.8 0.0027 9.1E-08 60.8 7.7 36 132-167 99-139 (443)
198 2dr3_A UPF0273 protein PH0284; 96.7 0.00084 2.9E-08 55.0 3.4 26 131-156 21-46 (247)
199 2bjv_A PSP operon transcriptio 96.7 0.001 3.5E-08 56.3 4.0 26 133-158 29-54 (265)
200 3b9q_A Chloroplast SRP recepto 96.7 0.001 3.5E-08 59.6 4.2 27 131-157 98-124 (302)
201 2f1r_A Molybdopterin-guanine d 96.7 0.00055 1.9E-08 56.7 2.3 25 134-158 3-27 (171)
202 1rj9_A FTSY, signal recognitio 96.7 0.00098 3.4E-08 59.9 4.1 26 132-157 101-126 (304)
203 2cbz_A Multidrug resistance-as 96.7 0.00077 2.6E-08 58.0 3.2 28 130-157 28-55 (237)
204 2pcj_A ABC transporter, lipopr 96.7 0.00066 2.2E-08 57.9 2.7 29 130-158 27-55 (224)
205 1g8f_A Sulfate adenylyltransfe 96.7 0.00092 3.1E-08 64.9 3.9 29 131-159 393-421 (511)
206 4hlc_A DTMP kinase, thymidylat 96.7 0.00092 3.1E-08 56.6 3.4 26 133-158 2-27 (205)
207 2ce7_A Cell division protein F 96.7 0.0013 4.3E-08 63.1 4.7 34 132-165 48-81 (476)
208 2r44_A Uncharacterized protein 96.7 0.00086 3E-08 58.5 3.3 29 134-162 47-75 (331)
209 1mv5_A LMRA, multidrug resista 96.7 0.00088 3E-08 57.6 3.3 29 130-158 25-53 (243)
210 3tqf_A HPR(Ser) kinase; transf 96.7 0.0016 5.6E-08 56.1 4.9 42 132-174 15-56 (181)
211 2gza_A Type IV secretion syste 96.7 0.00079 2.7E-08 61.4 3.0 29 130-158 172-200 (361)
212 3e70_C DPA, signal recognition 96.7 0.0012 4.1E-08 60.1 4.2 27 131-157 127-153 (328)
213 2ewv_A Twitching motility prot 96.7 0.0011 3.9E-08 60.7 4.0 28 130-157 133-160 (372)
214 3m6a_A ATP-dependent protease 96.6 0.0015 5.1E-08 62.7 4.8 30 132-161 107-136 (543)
215 1b0u_A Histidine permease; ABC 96.6 0.00095 3.2E-08 58.4 3.2 29 130-158 29-57 (262)
216 3hu3_A Transitional endoplasmi 96.6 0.0015 5.2E-08 62.3 4.8 36 130-165 235-270 (489)
217 1m8p_A Sulfate adenylyltransfe 96.6 0.0012 4.3E-08 64.3 4.2 29 130-158 393-421 (573)
218 3pxg_A Negative regulator of g 96.6 0.0014 4.8E-08 61.5 4.4 26 132-157 200-225 (468)
219 2pze_A Cystic fibrosis transme 96.6 0.00094 3.2E-08 57.1 2.8 29 130-158 31-59 (229)
220 2d2e_A SUFC protein; ABC-ATPas 96.6 0.0011 3.9E-08 57.3 3.4 27 130-156 26-52 (250)
221 2b8t_A Thymidine kinase; deoxy 96.6 0.0054 1.8E-07 53.2 7.6 27 131-157 10-36 (223)
222 4g1u_C Hemin import ATP-bindin 96.6 0.00092 3.2E-08 58.8 2.8 29 130-158 34-62 (266)
223 1upt_A ARL1, ADP-ribosylation 96.6 0.0019 6.5E-08 49.3 4.2 27 130-156 4-30 (171)
224 1cr0_A DNA primase/helicase; R 96.6 0.0013 4.5E-08 56.7 3.7 29 129-157 31-59 (296)
225 2ff7_A Alpha-hemolysin translo 96.6 0.00097 3.3E-08 57.8 2.8 29 130-158 32-60 (247)
226 2ghi_A Transport protein; mult 96.6 0.0011 3.8E-08 57.9 3.2 30 129-158 42-71 (260)
227 2zu0_C Probable ATP-dependent 96.6 0.0013 4.5E-08 57.6 3.7 28 129-156 42-69 (267)
228 1g6h_A High-affinity branched- 96.6 0.00097 3.3E-08 57.9 2.8 29 130-158 30-58 (257)
229 2px0_A Flagellar biosynthesis 96.6 0.0013 4.6E-08 58.6 3.8 37 131-167 103-145 (296)
230 3gfo_A Cobalt import ATP-bindi 96.6 0.00095 3.2E-08 59.3 2.8 29 130-158 31-59 (275)
231 1ji0_A ABC transporter; ATP bi 96.6 0.001 3.4E-08 57.3 2.8 29 130-158 29-57 (240)
232 3kta_A Chromosome segregation 96.6 0.0015 5.1E-08 51.9 3.6 25 134-158 27-51 (182)
233 2wsm_A Hydrogenase expression/ 96.6 0.0019 6.6E-08 52.4 4.4 35 131-165 28-66 (221)
234 3clv_A RAB5 protein, putative; 96.6 0.0018 6.1E-08 50.2 4.0 26 131-156 5-30 (208)
235 1ky3_A GTP-binding protein YPT 96.6 0.0014 4.8E-08 50.4 3.4 27 131-157 6-32 (182)
236 1vma_A Cell division protein F 96.6 0.0016 5.4E-08 58.7 4.2 37 131-167 102-143 (306)
237 1g8p_A Magnesium-chelatase 38 96.5 0.00091 3.1E-08 57.9 2.4 25 135-159 47-71 (350)
238 3pvs_A Replication-associated 96.5 0.0017 5.9E-08 61.1 4.5 31 134-164 51-81 (447)
239 2olj_A Amino acid ABC transpor 96.5 0.0012 4.1E-08 58.1 3.2 29 130-158 47-75 (263)
240 1sxj_E Activator 1 40 kDa subu 96.5 0.0013 4.4E-08 57.3 3.3 22 136-157 39-60 (354)
241 2ixe_A Antigen peptide transpo 96.5 0.0012 4.2E-08 58.0 3.2 30 129-158 41-70 (271)
242 3jvv_A Twitching mobility prot 96.5 0.0013 4.4E-08 60.5 3.4 27 131-157 121-147 (356)
243 1lw7_A Transcriptional regulat 96.5 0.0013 4.6E-08 59.1 3.5 27 133-159 170-196 (365)
244 2onk_A Molybdate/tungstate ABC 96.5 0.0015 5E-08 56.7 3.6 27 131-158 23-49 (240)
245 2qgz_A Helicase loader, putati 96.5 0.0015 5.3E-08 58.1 3.8 26 133-158 152-177 (308)
246 1svi_A GTP-binding protein YSX 96.5 0.011 3.6E-07 46.5 8.2 26 131-156 21-46 (195)
247 3te6_A Regulatory protein SIR3 96.5 0.0013 4.5E-08 60.0 3.3 28 130-157 42-69 (318)
248 2p5s_A RAS and EF-hand domain 96.5 0.0018 6.2E-08 51.8 3.7 27 131-157 26-52 (199)
249 1p9r_A General secretion pathw 96.5 0.0017 5.9E-08 61.0 4.2 28 131-158 165-192 (418)
250 1vpl_A ABC transporter, ATP-bi 96.5 0.0013 4.6E-08 57.5 3.2 29 130-158 38-66 (256)
251 2yz2_A Putative ABC transporte 96.5 0.0014 4.7E-08 57.4 3.2 29 130-158 30-58 (266)
252 1jr3_A DNA polymerase III subu 96.5 0.0016 5.6E-08 56.7 3.7 27 133-159 38-64 (373)
253 3cf2_A TER ATPase, transitiona 96.5 0.0018 6.1E-08 66.1 4.5 38 129-166 234-271 (806)
254 2og2_A Putative signal recogni 96.5 0.0019 6.4E-08 59.8 4.2 28 130-157 154-181 (359)
255 1qvr_A CLPB protein; coiled co 96.5 0.0058 2E-07 61.3 8.0 34 133-166 191-234 (854)
256 1nlf_A Regulatory protein REPA 96.5 0.0015 5.1E-08 56.2 3.3 27 130-156 27-53 (279)
257 1sxj_D Activator 1 41 kDa subu 96.5 0.0015 5.2E-08 56.4 3.3 23 136-158 61-83 (353)
258 2wjg_A FEOB, ferrous iron tran 96.5 0.002 6.7E-08 50.4 3.6 25 132-156 6-30 (188)
259 4tmk_A Protein (thymidylate ki 96.5 0.0018 6.1E-08 55.4 3.7 27 132-158 2-28 (213)
260 2hf9_A Probable hydrogenase ni 96.4 0.0023 7.8E-08 52.1 4.1 27 131-157 36-62 (226)
261 1nij_A Hypothetical protein YJ 96.4 0.0016 5.4E-08 58.0 3.4 26 132-157 3-28 (318)
262 1sgw_A Putative ABC transporte 96.4 0.0011 3.7E-08 56.8 2.2 29 130-158 32-60 (214)
263 2i3b_A HCR-ntpase, human cance 96.4 0.0015 5.3E-08 54.6 3.1 24 134-157 2-25 (189)
264 1iqp_A RFCS; clamp loader, ext 96.4 0.002 6.7E-08 54.8 3.7 24 135-158 48-71 (327)
265 3b85_A Phosphate starvation-in 96.4 0.0012 4E-08 56.1 2.3 26 131-156 20-45 (208)
266 2dyk_A GTP-binding protein; GT 96.4 0.002 6.9E-08 48.7 3.4 24 134-157 2-25 (161)
267 1yrb_A ATP(GTP)binding protein 96.4 0.0028 9.4E-08 52.9 4.5 36 131-166 12-51 (262)
268 1ypw_A Transitional endoplasmi 96.4 0.002 6.8E-08 64.9 4.3 36 130-165 235-270 (806)
269 2orw_A Thymidine kinase; TMTK, 96.4 0.0021 7.2E-08 53.1 3.7 25 133-157 3-27 (184)
270 2lkc_A Translation initiation 96.4 0.0024 8.1E-08 49.2 3.8 26 131-156 6-31 (178)
271 2dhr_A FTSH; AAA+ protein, hex 96.4 0.0027 9.1E-08 61.2 4.9 33 134-166 65-97 (499)
272 2nq2_C Hypothetical ABC transp 96.4 0.0015 5E-08 57.0 2.8 28 131-158 29-56 (253)
273 2qi9_C Vitamin B12 import ATP- 96.4 0.0015 5E-08 57.0 2.8 29 130-158 23-51 (249)
274 2ihy_A ABC transporter, ATP-bi 96.4 0.0015 5E-08 57.9 2.8 29 130-158 44-72 (279)
275 2fn4_A P23, RAS-related protei 96.4 0.0025 8.7E-08 48.9 3.7 26 131-156 7-32 (181)
276 3pxi_A Negative regulator of g 96.4 0.0024 8.1E-08 62.9 4.4 27 131-157 199-225 (758)
277 3cr8_A Sulfate adenylyltranfer 96.3 0.0015 5.3E-08 63.6 2.9 30 129-158 365-394 (552)
278 4dhe_A Probable GTP-binding pr 96.3 0.0051 1.7E-07 49.6 5.6 27 131-157 27-53 (223)
279 2ce2_X GTPase HRAS; signaling 96.3 0.0024 8.1E-08 47.9 3.3 24 134-157 4-27 (166)
280 1z2a_A RAS-related protein RAB 96.3 0.0026 8.9E-08 48.2 3.6 25 132-156 4-28 (168)
281 1pui_A ENGB, probable GTP-bind 96.3 0.0015 5.1E-08 52.3 2.3 27 131-157 24-50 (210)
282 1nrj_B SR-beta, signal recogni 96.3 0.0026 9E-08 51.3 3.7 27 131-157 10-36 (218)
283 1oix_A RAS-related protein RAB 96.3 0.0025 8.6E-08 51.2 3.5 25 133-157 29-53 (191)
284 2fna_A Conserved hypothetical 96.3 0.0031 1E-07 53.8 4.2 32 134-165 31-64 (357)
285 2chq_A Replication factor C sm 96.3 0.0027 9.3E-08 53.7 3.8 22 136-157 41-62 (319)
286 2wji_A Ferrous iron transport 96.3 0.0026 8.8E-08 49.6 3.4 23 134-156 4-26 (165)
287 1sxj_C Activator 1 40 kDa subu 96.3 0.0021 7.2E-08 56.6 3.3 23 136-158 49-71 (340)
288 1dek_A Deoxynucleoside monopho 96.3 0.0026 8.9E-08 55.9 3.8 31 134-164 2-32 (241)
289 2ged_A SR-beta, signal recogni 96.3 0.0031 1.1E-07 49.7 3.9 27 131-157 46-72 (193)
290 2qen_A Walker-type ATPase; unk 96.3 0.0028 9.6E-08 54.1 3.9 31 134-164 32-62 (350)
291 2a9k_A RAS-related protein RAL 96.3 0.0026 9.1E-08 49.0 3.4 27 131-157 16-42 (187)
292 3tw8_B RAS-related protein RAB 96.3 0.0024 8.1E-08 49.0 3.1 26 131-156 7-32 (181)
293 3nh6_A ATP-binding cassette SU 96.3 0.0016 5.3E-08 59.0 2.3 30 129-158 76-105 (306)
294 3k53_A Ferrous iron transport 96.3 0.016 5.6E-07 49.6 8.6 23 134-156 4-26 (271)
295 1u8z_A RAS-related protein RAL 96.3 0.0031 1.1E-07 47.5 3.6 25 133-157 4-28 (168)
296 1m7b_A RND3/RHOE small GTP-bin 96.3 0.0028 9.5E-08 50.0 3.5 27 130-156 4-30 (184)
297 1vg8_A RAS-related protein RAB 96.3 0.0026 9E-08 50.5 3.4 27 131-157 6-32 (207)
298 2pt7_A CAG-ALFA; ATPase, prote 96.3 0.0016 5.5E-08 58.8 2.4 28 131-158 169-196 (330)
299 2gks_A Bifunctional SAT/APS ki 96.2 0.0016 5.6E-08 63.0 2.5 35 132-166 371-410 (546)
300 1sxj_B Activator 1 37 kDa subu 96.2 0.0028 9.7E-08 53.7 3.7 22 136-157 45-66 (323)
301 2zts_A Putative uncharacterize 96.2 0.0028 9.7E-08 51.8 3.6 25 131-155 28-52 (251)
302 3kkq_A RAS-related protein M-R 96.2 0.0031 1.1E-07 49.0 3.7 26 131-156 16-41 (183)
303 1r6b_X CLPA protein; AAA+, N-t 96.2 0.0037 1.3E-07 61.2 4.9 32 135-166 490-521 (758)
304 2bbs_A Cystic fibrosis transme 96.2 0.0023 7.9E-08 57.2 3.2 29 130-158 61-89 (290)
305 1z0f_A RAB14, member RAS oncog 96.2 0.0029 1E-07 48.4 3.3 27 131-157 13-39 (179)
306 1kao_A RAP2A; GTP-binding prot 96.2 0.0033 1.1E-07 47.3 3.5 25 133-157 3-27 (167)
307 3pqc_A Probable GTP-binding pr 96.2 0.0032 1.1E-07 49.0 3.6 27 131-157 21-47 (195)
308 2iwr_A Centaurin gamma 1; ANK 96.2 0.003 1E-07 49.0 3.4 26 131-156 5-30 (178)
309 2p67_A LAO/AO transport system 96.2 0.019 6.7E-07 51.5 9.1 38 129-166 52-94 (341)
310 3bwd_D RAC-like GTP-binding pr 96.2 0.0034 1.2E-07 48.5 3.6 27 131-157 6-32 (182)
311 2www_A Methylmalonic aciduria 96.2 0.0047 1.6E-07 56.0 5.0 27 131-157 72-98 (349)
312 2qm8_A GTPase/ATPase; G protei 96.2 0.036 1.2E-06 50.0 10.8 29 129-157 51-79 (337)
313 1ojl_A Transcriptional regulat 96.2 0.0041 1.4E-07 55.0 4.5 36 131-166 23-63 (304)
314 3t5g_A GTP-binding protein RHE 96.1 0.003 1E-07 49.1 3.1 26 131-156 4-29 (181)
315 2hxs_A RAB-26, RAS-related pro 96.1 0.0043 1.5E-07 47.8 3.9 26 131-156 4-29 (178)
316 2erx_A GTP-binding protein DI- 96.1 0.0035 1.2E-07 47.5 3.3 24 133-156 3-26 (172)
317 2oap_1 GSPE-2, type II secreti 96.1 0.0024 8.1E-08 61.5 2.9 28 131-158 258-285 (511)
318 3fvq_A Fe(3+) IONS import ATP- 96.1 0.0032 1.1E-07 58.5 3.7 29 130-158 27-55 (359)
319 1zu4_A FTSY; GTPase, signal re 96.1 0.004 1.4E-07 56.3 4.2 37 131-167 103-144 (320)
320 2f9l_A RAB11B, member RAS onco 96.1 0.0038 1.3E-07 50.1 3.6 24 134-157 6-29 (199)
321 2gj8_A MNME, tRNA modification 96.1 0.0037 1.3E-07 49.4 3.5 26 132-157 3-28 (172)
322 2nzj_A GTP-binding protein REM 96.1 0.004 1.4E-07 47.6 3.5 25 133-157 4-28 (175)
323 2yyz_A Sugar ABC transporter, 96.1 0.0035 1.2E-07 58.0 3.7 29 130-158 26-54 (359)
324 4dsu_A GTPase KRAS, isoform 2B 96.1 0.0034 1.2E-07 48.6 3.1 26 132-157 3-28 (189)
325 1r2q_A RAS-related protein RAB 96.1 0.0032 1.1E-07 47.7 2.8 25 132-156 5-29 (170)
326 1z0j_A RAB-22, RAS-related pro 96.1 0.0034 1.2E-07 47.7 3.0 25 133-157 6-30 (170)
327 2pjz_A Hypothetical protein ST 96.0 0.0031 1.1E-07 55.5 3.1 27 130-157 28-54 (263)
328 2it1_A 362AA long hypothetical 96.0 0.0037 1.3E-07 57.9 3.7 29 130-158 26-54 (362)
329 2bme_A RAB4A, RAS-related prot 96.0 0.0038 1.3E-07 48.5 3.3 27 131-157 8-34 (186)
330 2y8e_A RAB-protein 6, GH09086P 96.0 0.0036 1.2E-07 47.9 3.1 24 133-156 14-37 (179)
331 1pzn_A RAD51, DNA repair and r 96.0 0.0051 1.7E-07 55.9 4.5 29 129-157 127-155 (349)
332 1z47_A CYSA, putative ABC-tran 96.0 0.0034 1.2E-07 58.1 3.4 29 130-158 38-66 (355)
333 1v43_A Sugar-binding transport 96.0 0.0038 1.3E-07 58.0 3.7 29 130-158 34-62 (372)
334 3kl4_A SRP54, signal recogniti 96.0 0.0036 1.2E-07 59.5 3.6 36 132-167 96-136 (433)
335 1c1y_A RAS-related protein RAP 96.0 0.0048 1.6E-07 46.7 3.6 23 134-156 4-26 (167)
336 1z08_A RAS-related protein RAB 96.0 0.0039 1.3E-07 47.5 3.1 25 132-156 5-29 (170)
337 2bov_A RAla, RAS-related prote 96.0 0.0046 1.6E-07 48.8 3.6 27 131-157 12-38 (206)
338 3tui_C Methionine import ATP-b 96.0 0.004 1.4E-07 58.1 3.7 30 129-158 50-79 (366)
339 3rlf_A Maltose/maltodextrin im 96.0 0.004 1.4E-07 58.3 3.7 29 130-158 26-54 (381)
340 1g16_A RAS-related protein SEC 96.0 0.0048 1.6E-07 46.8 3.5 23 134-156 4-26 (170)
341 1r6b_X CLPA protein; AAA+, N-t 96.0 0.0062 2.1E-07 59.6 5.1 26 132-157 206-231 (758)
342 1g29_1 MALK, maltose transport 96.0 0.0037 1.3E-07 58.0 3.4 28 131-158 27-54 (372)
343 1ek0_A Protein (GTP-binding pr 96.0 0.004 1.4E-07 47.1 3.0 24 134-157 4-27 (170)
344 3bc1_A RAS-related protein RAB 96.0 0.0048 1.7E-07 47.7 3.5 25 132-156 10-34 (195)
345 3d31_A Sulfate/molybdate ABC t 96.0 0.0031 1.1E-07 58.0 2.9 29 130-158 23-51 (348)
346 2yhs_A FTSY, cell division pro 96.0 0.0046 1.6E-07 60.3 4.2 28 130-157 290-317 (503)
347 2ga8_A Hypothetical 39.9 kDa p 95.9 0.0029 9.9E-08 59.3 2.5 29 133-161 24-52 (359)
348 2v3c_C SRP54, signal recogniti 95.9 0.0036 1.2E-07 59.0 3.2 35 132-166 98-137 (432)
349 1ko7_A HPR kinase/phosphatase; 95.9 0.0071 2.4E-07 55.5 5.1 40 133-173 144-183 (314)
350 1oxx_K GLCV, glucose, ABC tran 95.9 0.003 1E-07 58.1 2.5 29 130-158 28-56 (353)
351 1p6x_A Thymidine kinase; P-loo 95.9 0.003 1E-07 58.2 2.5 32 128-159 2-33 (334)
352 1wms_A RAB-9, RAB9, RAS-relate 95.9 0.0042 1.4E-07 47.8 3.0 25 133-157 7-31 (177)
353 3con_A GTPase NRAS; structural 95.9 0.0047 1.6E-07 48.5 3.3 26 132-157 20-45 (190)
354 3oes_A GTPase rhebl1; small GT 95.9 0.005 1.7E-07 49.3 3.5 29 129-157 20-48 (201)
355 2fh5_B SR-beta, signal recogni 95.9 0.0051 1.8E-07 49.4 3.5 27 131-157 5-31 (214)
356 3gd7_A Fusion complex of cysti 95.9 0.0047 1.6E-07 57.8 3.7 29 129-157 43-71 (390)
357 2zej_A Dardarin, leucine-rich 95.9 0.004 1.4E-07 49.3 2.8 23 134-156 3-25 (184)
358 1f2t_A RAD50 ABC-ATPase; DNA d 95.9 0.006 2.1E-07 48.8 3.8 25 133-157 23-47 (149)
359 2j9r_A Thymidine kinase; TK1, 95.9 0.012 4.1E-07 51.4 6.0 28 130-157 25-52 (214)
360 1w5s_A Origin recognition comp 95.9 0.0046 1.6E-07 54.4 3.3 26 132-157 49-76 (412)
361 2atv_A RERG, RAS-like estrogen 95.9 0.0059 2E-07 48.6 3.7 26 131-156 26-51 (196)
362 1xx6_A Thymidine kinase; NESG, 95.9 0.0068 2.3E-07 51.1 4.2 27 131-157 6-32 (191)
363 3sop_A Neuronal-specific septi 95.8 0.0047 1.6E-07 54.3 3.3 25 134-158 3-27 (270)
364 1moz_A ARL1, ADP-ribosylation 95.8 0.0047 1.6E-07 47.9 2.8 25 131-155 16-40 (183)
365 2efe_B Small GTP-binding prote 95.8 0.0058 2E-07 47.1 3.3 26 131-156 10-35 (181)
366 1a5t_A Delta prime, HOLB; zinc 95.8 0.0068 2.3E-07 53.8 4.2 29 131-159 22-50 (334)
367 2oil_A CATX-8, RAS-related pro 95.8 0.0065 2.2E-07 47.9 3.6 27 131-157 23-49 (193)
368 2yv5_A YJEQ protein; hydrolase 95.8 0.0058 2E-07 54.2 3.6 26 132-158 164-189 (302)
369 2bcg_Y Protein YP2, GTP-bindin 95.8 0.0063 2.2E-07 48.6 3.5 26 131-156 6-31 (206)
370 1qvr_A CLPB protein; coiled co 95.8 0.0063 2.2E-07 61.0 4.2 32 134-165 589-623 (854)
371 3q85_A GTP-binding protein REM 95.7 0.0067 2.3E-07 46.3 3.4 22 134-155 3-24 (169)
372 3t1o_A Gliding protein MGLA; G 95.7 0.0064 2.2E-07 47.3 3.3 27 132-158 13-39 (198)
373 3lxx_A GTPase IMAP family memb 95.7 0.0062 2.1E-07 50.8 3.4 27 131-157 27-53 (239)
374 2npi_A Protein CLP1; CLP1-PCF1 95.7 0.0049 1.7E-07 58.6 3.2 32 126-157 131-162 (460)
375 2g6b_A RAS-related protein RAB 95.7 0.0069 2.4E-07 46.7 3.4 26 132-157 9-34 (180)
376 1mh1_A RAC1; GTP-binding, GTPa 95.7 0.007 2.4E-07 46.7 3.4 25 132-156 4-28 (186)
377 3q72_A GTP-binding protein RAD 95.7 0.0071 2.4E-07 46.0 3.4 22 134-155 3-24 (166)
378 1ls1_A Signal recognition part 95.7 0.0071 2.4E-07 53.7 3.8 35 132-166 97-136 (295)
379 3b5x_A Lipid A export ATP-bind 95.7 0.0058 2E-07 58.7 3.5 30 129-158 365-394 (582)
380 1r8s_A ADP-ribosylation factor 95.7 0.0081 2.8E-07 45.6 3.6 23 135-157 2-24 (164)
381 2gf0_A GTP-binding protein DI- 95.7 0.0091 3.1E-07 46.9 4.0 26 131-156 6-31 (199)
382 1ypw_A Transitional endoplasmi 95.7 0.0033 1.1E-07 63.3 1.7 35 131-165 509-543 (806)
383 2j37_W Signal recognition part 95.7 0.0088 3E-07 57.8 4.6 36 131-166 99-139 (504)
384 3tkl_A RAS-related protein RAB 95.7 0.0078 2.7E-07 47.1 3.6 25 133-157 16-40 (196)
385 1x3s_A RAS-related protein RAB 95.6 0.0054 1.8E-07 47.9 2.6 26 132-157 14-39 (195)
386 3b60_A Lipid A export ATP-bind 95.6 0.0054 1.8E-07 59.0 3.1 30 129-158 365-394 (582)
387 3cf2_A TER ATPase, transitiona 95.6 0.0067 2.3E-07 62.0 3.9 38 130-167 508-545 (806)
388 1m2o_B GTP-binding protein SAR 95.6 0.0075 2.6E-07 48.3 3.5 26 131-156 21-46 (190)
389 1ksh_A ARF-like protein 2; sma 95.6 0.008 2.7E-07 47.0 3.5 27 131-157 16-42 (186)
390 1fzq_A ADP-ribosylation factor 95.6 0.0087 3E-07 47.4 3.8 26 131-156 14-39 (181)
391 2z43_A DNA repair and recombin 95.6 0.0088 3E-07 53.1 4.2 28 130-157 104-131 (324)
392 1v5w_A DMC1, meiotic recombina 95.6 0.011 3.7E-07 53.3 4.8 28 129-156 118-145 (343)
393 3cph_A RAS-related protein SEC 95.6 0.0086 2.9E-07 47.7 3.7 26 131-156 18-43 (213)
394 3ihw_A Centg3; RAS, centaurin, 95.6 0.0089 3.1E-07 47.7 3.8 28 130-157 17-44 (184)
395 1gwn_A RHO-related GTP-binding 95.6 0.0077 2.6E-07 49.3 3.5 26 131-156 26-51 (205)
396 1knx_A Probable HPR(Ser) kinas 95.6 0.0091 3.1E-07 54.8 4.3 38 133-171 147-184 (312)
397 3dz8_A RAS-related protein RAB 95.6 0.0073 2.5E-07 47.8 3.1 27 131-157 21-47 (191)
398 2fu5_C RAS-related protein RAB 95.6 0.0043 1.5E-07 48.2 1.8 25 132-156 7-31 (183)
399 1zj6_A ADP-ribosylation factor 95.6 0.0091 3.1E-07 47.0 3.7 26 131-156 14-39 (187)
400 3k1j_A LON protease, ATP-depen 95.6 0.0064 2.2E-07 58.7 3.3 27 132-158 59-85 (604)
401 1u0j_A DNA replication protein 95.5 0.011 3.7E-07 53.2 4.5 28 131-158 102-129 (267)
402 2vhj_A Ntpase P4, P4; non- hyd 95.5 0.0072 2.4E-07 56.2 3.4 35 130-164 120-156 (331)
403 2h17_A ADP-ribosylation factor 95.5 0.0077 2.6E-07 47.3 3.1 26 131-156 19-44 (181)
404 2fg5_A RAB-22B, RAS-related pr 95.5 0.0081 2.8E-07 47.7 3.2 27 131-157 21-47 (192)
405 2qu8_A Putative nucleolar GTP- 95.5 0.0081 2.8E-07 49.4 3.3 26 131-156 27-52 (228)
406 3reg_A RHO-like small GTPase; 95.5 0.0085 2.9E-07 47.4 3.3 27 131-157 21-47 (194)
407 2q3h_A RAS homolog gene family 95.5 0.0086 2.9E-07 47.5 3.3 27 130-156 17-43 (201)
408 4bas_A ADP-ribosylation factor 95.5 0.0083 2.9E-07 47.1 3.2 27 130-156 14-40 (199)
409 2cxx_A Probable GTP-binding pr 95.5 0.0086 2.9E-07 46.5 3.2 23 134-156 2-24 (190)
410 2i1q_A DNA repair and recombin 95.5 0.008 2.7E-07 52.8 3.4 26 131-156 96-121 (322)
411 2j0v_A RAC-like GTP-binding pr 95.5 0.011 3.6E-07 47.5 3.9 26 131-156 7-32 (212)
412 3c5c_A RAS-like protein 12; GD 95.5 0.0096 3.3E-07 47.4 3.5 27 131-157 19-45 (187)
413 1u0l_A Probable GTPase ENGC; p 95.5 0.0069 2.4E-07 53.5 2.9 27 132-158 168-194 (301)
414 1zbd_A Rabphilin-3A; G protein 95.5 0.0089 3E-07 47.5 3.3 25 133-157 8-32 (203)
415 2zr9_A Protein RECA, recombina 95.4 0.0084 2.9E-07 54.7 3.5 27 130-156 58-84 (349)
416 3hr8_A Protein RECA; alpha and 95.4 0.0084 2.9E-07 55.5 3.5 28 130-157 58-85 (356)
417 3nbx_X ATPase RAVA; AAA+ ATPas 95.4 0.007 2.4E-07 58.2 3.0 25 134-158 42-66 (500)
418 2yl4_A ATP-binding cassette SU 95.4 0.0057 2E-07 58.9 2.4 30 129-158 366-395 (595)
419 2o52_A RAS-related protein RAB 95.4 0.0082 2.8E-07 48.3 3.0 26 131-156 23-48 (200)
420 3qf4_B Uncharacterized ABC tra 95.4 0.0062 2.1E-07 58.9 2.6 30 129-158 377-406 (598)
421 1z06_A RAS-related protein RAB 95.4 0.011 3.7E-07 46.6 3.5 25 132-156 19-43 (189)
422 3ch4_B Pmkase, phosphomevalona 95.4 0.013 4.4E-07 50.7 4.3 37 131-167 9-49 (202)
423 1f6b_A SAR1; gtpases, N-termin 95.4 0.011 3.6E-07 47.8 3.5 25 131-155 23-47 (198)
424 2a5j_A RAS-related protein RAB 95.4 0.011 3.7E-07 46.9 3.5 26 132-157 20-45 (191)
425 3cbq_A GTP-binding protein REM 95.4 0.0079 2.7E-07 48.6 2.7 25 131-155 21-45 (195)
426 3qf7_A RAD50; ABC-ATPase, ATPa 95.4 0.01 3.6E-07 54.0 3.8 23 134-156 24-46 (365)
427 1zd9_A ADP-ribosylation factor 95.4 0.011 3.7E-07 46.9 3.4 26 131-156 20-45 (188)
428 2xxa_A Signal recognition part 95.3 0.012 4E-07 55.6 4.2 36 131-166 98-139 (433)
429 3bh0_A DNAB-like replicative h 95.3 0.012 4E-07 52.3 4.0 27 130-156 65-91 (315)
430 1z6t_A APAF-1, apoptotic prote 95.3 0.0093 3.2E-07 55.8 3.5 25 131-155 145-169 (591)
431 2gf9_A RAS-related protein RAB 95.3 0.011 3.7E-07 46.6 3.4 25 133-157 22-46 (189)
432 2fv8_A H6, RHO-related GTP-bin 95.3 0.011 3.8E-07 47.6 3.4 26 132-157 24-49 (207)
433 2xtp_A GTPase IMAP family memb 95.3 0.011 3.9E-07 49.6 3.6 27 131-157 20-46 (260)
434 1yqt_A RNAse L inhibitor; ATP- 95.3 0.01 3.5E-07 57.2 3.7 28 130-157 44-71 (538)
435 2b6h_A ADP-ribosylation factor 95.3 0.013 4.4E-07 46.9 3.7 25 131-155 27-51 (192)
436 2rcn_A Probable GTPase ENGC; Y 95.3 0.01 3.5E-07 55.1 3.5 27 132-158 214-240 (358)
437 4a82_A Cystic fibrosis transme 95.3 0.0052 1.8E-07 59.1 1.6 30 129-158 363-392 (578)
438 3lda_A DNA repair protein RAD5 95.2 0.0096 3.3E-07 55.7 3.3 25 130-154 175-199 (400)
439 2il1_A RAB12; G-protein, GDP, 95.2 0.011 3.9E-07 47.0 3.2 25 132-156 25-49 (192)
440 2atx_A Small GTP binding prote 95.2 0.0091 3.1E-07 47.1 2.6 25 132-156 17-41 (194)
441 1j8m_F SRP54, signal recogniti 95.2 0.0098 3.3E-07 53.1 3.1 34 133-166 98-136 (297)
442 2gco_A H9, RHO-related GTP-bin 95.2 0.012 4.1E-07 47.2 3.4 26 132-157 24-49 (201)
443 3qks_A DNA double-strand break 95.2 0.014 4.8E-07 48.6 3.8 26 132-157 22-47 (203)
444 3llu_A RAS-related GTP-binding 95.2 0.011 3.8E-07 47.2 3.0 29 130-158 17-45 (196)
445 3qf4_A ABC transporter, ATP-bi 95.2 0.0069 2.4E-07 58.6 2.1 30 129-158 365-394 (587)
446 2x77_A ADP-ribosylation factor 95.1 0.011 3.7E-07 46.5 2.8 25 131-155 20-44 (189)
447 2j1l_A RHO-related GTP-binding 95.1 0.014 4.7E-07 47.6 3.5 26 131-156 32-57 (214)
448 2qag_B Septin-6, protein NEDD5 95.1 0.011 3.9E-07 56.2 3.3 28 129-156 36-65 (427)
449 2r6a_A DNAB helicase, replicat 95.1 0.014 4.7E-07 54.3 3.8 29 128-156 198-226 (454)
450 3llm_A ATP-dependent RNA helic 95.1 0.014 4.7E-07 48.9 3.4 22 132-153 75-96 (235)
451 1u94_A RECA protein, recombina 95.1 0.013 4.5E-07 53.8 3.6 27 130-156 60-86 (356)
452 2h57_A ADP-ribosylation factor 95.1 0.012 4.1E-07 46.4 2.8 27 131-157 19-45 (190)
453 3e2i_A Thymidine kinase; Zn-bi 95.0 0.079 2.7E-06 46.6 8.3 27 131-157 26-52 (219)
454 3cpj_B GTP-binding protein YPT 95.0 0.014 5E-07 47.6 3.4 26 132-157 12-37 (223)
455 3ozx_A RNAse L inhibitor; ATP 95.0 0.012 4.1E-07 56.9 3.3 27 131-157 23-49 (538)
456 3qkt_A DNA double-strand break 95.0 0.016 5.4E-07 51.8 3.8 25 131-155 21-45 (339)
457 4gzl_A RAS-related C3 botulinu 95.0 0.017 5.8E-07 46.7 3.7 26 131-156 28-53 (204)
458 2ew1_A RAS-related protein RAB 95.0 0.016 5.5E-07 47.3 3.5 25 132-156 25-49 (201)
459 1tf7_A KAIC; homohexamer, hexa 95.0 0.013 4.4E-07 55.6 3.3 25 129-153 35-59 (525)
460 3j16_B RLI1P; ribosome recycli 95.0 0.014 4.8E-07 57.4 3.7 27 131-157 101-127 (608)
461 2f7s_A C25KG, RAS-related prot 94.9 0.016 5.5E-07 46.6 3.4 26 131-156 23-48 (217)
462 2hup_A RAS-related protein RAB 94.9 0.015 5.1E-07 46.9 3.2 26 131-156 27-52 (201)
463 2r2a_A Uncharacterized protein 94.9 0.018 6.2E-07 48.7 3.8 23 134-156 6-28 (199)
464 3ozx_A RNAse L inhibitor; ATP 94.9 0.011 3.8E-07 57.1 2.8 27 131-157 292-318 (538)
465 1t9h_A YLOQ, probable GTPase E 94.9 0.0073 2.5E-07 54.8 1.4 26 132-157 172-197 (307)
466 2obl_A ESCN; ATPase, hydrolase 94.9 0.021 7.1E-07 52.2 4.4 31 129-159 67-97 (347)
467 3hjn_A DTMP kinase, thymidylat 94.9 0.017 5.7E-07 48.3 3.5 24 135-158 2-25 (197)
468 2cjw_A GTP-binding protein GEM 94.9 0.02 6.8E-07 46.1 3.8 24 133-156 6-29 (192)
469 2ffh_A Protein (FFH); SRP54, s 94.9 0.017 5.8E-07 54.7 3.9 36 132-167 97-137 (425)
470 1tq4_A IIGP1, interferon-induc 94.9 0.016 5.4E-07 54.6 3.6 26 132-157 68-93 (413)
471 4ag6_A VIRB4 ATPase, type IV s 94.9 0.019 6.5E-07 51.8 4.0 35 133-167 35-72 (392)
472 1yqt_A RNAse L inhibitor; ATP- 94.9 0.014 4.9E-07 56.1 3.3 27 131-157 310-336 (538)
473 2a5y_B CED-4; apoptosis; HET: 94.9 0.02 6.7E-07 54.3 4.2 25 131-155 150-174 (549)
474 2dpy_A FLII, flagellum-specifi 94.8 0.021 7E-07 53.9 4.2 31 129-159 153-183 (438)
475 4aby_A DNA repair protein RECN 94.8 0.0079 2.7E-07 54.1 1.3 28 130-158 58-85 (415)
476 3bk7_A ABC transporter ATP-bin 94.8 0.014 4.8E-07 57.3 3.1 28 130-157 114-141 (607)
477 3lxw_A GTPase IMAP family memb 94.8 0.017 5.7E-07 49.3 3.2 27 131-157 19-45 (247)
478 3auy_A DNA double-strand break 94.8 0.019 6.7E-07 51.8 3.8 25 131-155 23-47 (371)
479 1w4r_A Thymidine kinase; type 94.7 0.025 8.6E-07 48.8 4.3 25 131-155 18-42 (195)
480 3bk7_A ABC transporter ATP-bin 94.7 0.016 5.6E-07 56.8 3.3 27 131-157 380-406 (607)
481 3euj_A Chromosome partition pr 94.7 0.018 6.3E-07 55.5 3.6 26 131-157 28-53 (483)
482 2q6t_A DNAB replication FORK h 94.7 0.021 7.2E-07 52.9 3.9 29 128-156 195-223 (444)
483 2qnr_A Septin-2, protein NEDD5 94.7 0.015 5.1E-07 51.5 2.8 22 134-155 19-40 (301)
484 3q3j_B RHO-related GTP-binding 94.7 0.024 8.1E-07 46.4 3.7 26 131-156 25-50 (214)
485 1tf7_A KAIC; homohexamer, hexa 94.6 0.018 6.2E-07 54.5 3.3 29 129-157 277-305 (525)
486 2yc2_C IFT27, small RAB-relate 94.6 0.0063 2.1E-07 48.0 0.1 25 132-156 19-43 (208)
487 3j16_B RLI1P; ribosome recycli 94.6 0.02 6.9E-07 56.3 3.7 25 133-157 378-402 (608)
488 3iev_A GTP-binding protein ERA 94.6 0.12 4.1E-06 45.5 8.4 27 130-156 7-33 (308)
489 1e2k_A Thymidine kinase; trans 94.5 0.013 4.4E-07 54.0 2.0 28 131-158 2-29 (331)
490 2r8r_A Sensor protein; KDPD, P 94.5 0.028 9.4E-07 49.6 4.1 34 133-166 6-44 (228)
491 4dcu_A GTP-binding protein ENG 94.5 0.038 1.3E-06 51.3 5.2 26 132-157 22-47 (456)
492 1w1w_A Structural maintenance 94.5 0.023 7.8E-07 52.2 3.7 28 131-158 24-51 (430)
493 4f4c_A Multidrug resistance pr 94.5 0.017 5.8E-07 61.2 3.0 31 128-158 439-469 (1321)
494 1e69_A Chromosome segregation 94.4 0.019 6.6E-07 50.8 2.9 22 134-155 25-46 (322)
495 3def_A T7I23.11 protein; chlor 94.4 0.028 9.6E-07 48.0 3.8 27 131-157 34-60 (262)
496 1xp8_A RECA protein, recombina 94.4 0.024 8.3E-07 52.3 3.5 27 131-157 72-98 (366)
497 3upu_A ATP-dependent DNA helic 94.3 0.029 9.8E-07 52.1 3.9 24 134-157 46-69 (459)
498 1h65_A Chloroplast outer envel 94.3 0.03 1E-06 47.9 3.8 27 131-157 37-63 (270)
499 1ega_A Protein (GTP-binding pr 94.2 0.026 8.8E-07 49.8 3.3 26 131-156 6-31 (301)
500 3ux8_A Excinuclease ABC, A sub 94.2 0.015 5.1E-07 56.7 1.8 25 129-153 344-368 (670)
No 1
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=100.00 E-value=2.3e-35 Score=271.99 Aligned_cols=112 Identities=38% Similarity=0.623 Sum_probs=109.6
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHH
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEH 210 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~ 210 (251)
+.+++|+|+|||||||||||.+||++++.++||+|++|+|++++|+|+||+++|++++||||+|.++|.+.|++++|+++
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~~~igTakp~~~E~~~v~hhlid~~~~~e~~s~~~f~~~ 87 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDIRDPSQAYSAADFRRD 87 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHH
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccccccccccCCCCCHHHHcCCCEEEeccCCccccccHHHHHHH
Confidence 55689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCcEEEEcccHHHHHHHHcCC
Q 045245 211 ALRAIDKIIENGHLHIIVGGSNTYIEALVEDS 242 (251)
Q Consensus 211 A~k~I~eI~~~Gk~PILVGGTglYlkaLl~g~ 242 (251)
|.+.|++++++|+.||||||||||++||++|+
T Consensus 88 a~~~i~~i~~~g~~pilVGGTglYi~all~gl 119 (316)
T 3foz_A 88 ALAEMADITAAGRIPLLVGGTMLYFKALLEGL 119 (316)
T ss_dssp HHHHHHHHHHTTCEEEEEESCHHHHHHHHSCC
T ss_pred HHHHHHHHHhCCCcEEEEcCcHHHHHHHHcCc
Confidence 99999999999999999999999999999997
No 2
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=100.00 E-value=3.6e-35 Score=271.41 Aligned_cols=118 Identities=41% Similarity=0.701 Sum_probs=112.4
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHHH
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHA 211 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~A 211 (251)
++++|+|+|||||||||||..||++++.++||+|++|+|++++|+|+||+++|+.++||||+|..+|.+.|++++|+++|
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~~~a 81 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQDLA 81 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHHHHH
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCcEEEEcccHHHHHHHHcCC-------chhhhcc
Q 045245 212 LRAIDKIIENGHLHIIVGGSNTYIEALVEDS-------IINFRAN 249 (251)
Q Consensus 212 ~k~I~eI~~~Gk~PILVGGTglYlkaLl~g~-------~~~~~~~ 249 (251)
.+.|++++++|+.||||||||||++||++|+ ++++|+.
T Consensus 82 ~~~i~~i~~~gk~pIlVGGTglYi~aLl~g~~~~~~~~~~~~R~~ 126 (322)
T 3exa_A 82 TPLITEIHERGRLPFLVGGTGLYVNAVIHQFNLGDIRADEDYRHE 126 (322)
T ss_dssp HHHHHHHHHTTCEEEEESCCHHHHHHHHHTCCCCCCBCCHHHHHH
T ss_pred HHHHHHHHhCCCcEEEEcCcHHHHHHHHcCCcCCCCCCCHHHHHH
Confidence 9999999999999999999999999999995 2356664
No 3
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=99.98 E-value=6.1e-33 Score=263.21 Aligned_cols=111 Identities=41% Similarity=0.743 Sum_probs=108.4
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHHHH
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHAL 212 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~A~ 212 (251)
+++|+|+|||||||||||..||++++.++||+|++|+|++++|+|++|+++|+.++||||+|..+|.+.|++++|.++|.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~~~a~ 81 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFETECM 81 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCcEEEEcccHHHHHHHHcCCc
Q 045245 213 RAIDKIIENGHLHIIVGGSNTYIEALVEDSI 243 (251)
Q Consensus 213 k~I~eI~~~Gk~PILVGGTglYlkaLl~g~~ 243 (251)
+.|++++++|+.||||||||||++||++|+.
T Consensus 82 ~~i~~i~~~g~~pilVGGTglYi~aLl~gl~ 112 (409)
T 3eph_A 82 NAIEDIHRRGKIPIVVGGTHYYLQTLFNKRV 112 (409)
T ss_dssp HHHHHHHTTTCEEEEECSCGGGGGGGGTCSC
T ss_pred HHHHHHHhcCCCEEEECChHHHHHHHHcccc
Confidence 9999999999999999999999999999964
No 4
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=99.97 E-value=1.2e-31 Score=248.79 Aligned_cols=112 Identities=53% Similarity=0.845 Sum_probs=109.0
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCC-CCccCHHHHHH
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDP-EADYPEEEFCE 209 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~-~e~fsag~F~e 209 (251)
.++++|+|+|||||||||||..||++++.++||+|++|+|++++|+|+||+++|+.++||||+|..++ .+.|++++|.+
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~~F~~ 117 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADFRS 117 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHHHH
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHHHHHH
Confidence 35679999999999999999999999999999999999999999999999999999999999999999 89999999999
Q ss_pred HHHHHHHHHHHcCCcEEEEcccHHHHHHHHcCC
Q 045245 210 HALRAIDKIIENGHLHIIVGGSNTYIEALVEDS 242 (251)
Q Consensus 210 ~A~k~I~eI~~~Gk~PILVGGTglYlkaLl~g~ 242 (251)
++.+.|+++..+|+.||+||||++|+++++.|+
T Consensus 118 ~a~~~i~~i~~~g~~pIlvGGtglYi~all~g~ 150 (339)
T 3a8t_A 118 LAGKAVSEITGRRKLPVLVGGSNSFIHALLVDR 150 (339)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCHHHHHHHHBSS
T ss_pred HHHHHHHHHHhcCCeEEEEcCHHHHHHHHHhCC
Confidence 999999999999999999999999999999986
No 5
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=99.96 E-value=1.2e-29 Score=233.45 Aligned_cols=119 Identities=34% Similarity=0.544 Sum_probs=108.4
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHHH
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHA 211 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~A 211 (251)
.+++|+|+|||||||||||+.||++++.++|++|++|+|++++|+|++|+++|+.++||||+|..++.+.+++++|.+.+
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~~~~igTakp~~~e~~gvph~lid~~~~~~~~~~~~F~~~a 83 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLIDIRDPAESYSAAEFRADA 83 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCTTSCCCHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhhcCCCcccCCCCHHHHcCCCEEEeeccCcccccCHHHHHHHH
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCcEEEEcccHHHHHHHHcCC------chhhhccc
Q 045245 212 LRAIDKIIENGHLHIIVGGSNTYIEALVEDS------IINFRANY 250 (251)
Q Consensus 212 ~k~I~eI~~~Gk~PILVGGTglYlkaLl~g~------~~~~~~~~ 250 (251)
.+.++++.++|+.||++|||++|++||++|+ ++++|+.+
T Consensus 84 ~~~i~~i~~~g~~~IlvGGt~~y~~all~g~~~~p~~~~~~R~~l 128 (323)
T 3crm_A 84 LAAMAKATARGRIPLLVGGTMLYYKALLEGLADMPGADPEVRAAI 128 (323)
T ss_dssp HHHHHHHHHTTCEEEEEESCHHHHHHHHCCC--------------
T ss_pred HHHHHHHHHcCCeEEEECCchhhHHHHHcCCCCCCCCCHHHHHHH
Confidence 9999999999999999999999999999997 24566554
No 6
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=99.94 E-value=5.3e-27 Score=217.35 Aligned_cols=110 Identities=39% Similarity=0.718 Sum_probs=107.4
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHHHH
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHAL 212 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~A~ 212 (251)
+++|+|+|||||||||||..||++++.++|++|++|+|++++|+|++|+.+|+.+++|||+|..++.+.+++++|.+++.
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~hhl~di~~~~~~~~~~dF~~~a~ 86 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMIDILPPDASFSAYEFKKRAE 86 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTTTCCCTTTTTTCCEESSSCBCTTSCCCHHHHHHHHH
T ss_pred CceEEEECCCcCcHHHHHHHHHHHcCCceeccccccccccccccccCCCHHHHHHHHHHHHHHhCCccccCHHHHHHHHH
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCcEEEEcccHHHHHHHHcCC
Q 045245 213 RAIDKIIENGHLHIIVGGSNTYIEALVEDS 242 (251)
Q Consensus 213 k~I~eI~~~Gk~PILVGGTglYlkaLl~g~ 242 (251)
+.++++..+|+.|||+||+++|+++++.++
T Consensus 87 ~~i~~i~~~g~~~IlvGGt~ly~~~l~~~l 116 (340)
T 3d3q_A 87 KYIKDITRRGKVPIIAGGTGLYIQSLLYNY 116 (340)
T ss_dssp HHHHHHHHTTCEEEEECCCHHHHHHHHBCS
T ss_pred HHHHHHHhCCCcEEEECChhhhHHHHHhcc
Confidence 999999999999999999999999999997
No 7
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=99.86 E-value=8.2e-22 Score=171.16 Aligned_cols=107 Identities=16% Similarity=0.203 Sum_probs=101.9
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCC-ccCHHHHHHHHH
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEA-DYPEEEFCEHAL 212 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e-~fsag~F~e~A~ 212 (251)
++|+|+|||||||||||+.||++++.++++.|.+++|++++++|++|+++|+.+++||+++..++.+ .++..+|.+.+.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 81 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRLI 81 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHHHH
Confidence 5899999999999999999999999999999999999999999999999999999999999988877 899999999999
Q ss_pred HHHHHHHHcCCcEEEEcccHHHHHHHHcC
Q 045245 213 RAIDKIIENGHLHIIVGGSNTYIEALVED 241 (251)
Q Consensus 213 k~I~eI~~~Gk~PILVGGTglYlkaLl~g 241 (251)
+++ ++.++|+.||++||++.|+++++.+
T Consensus 82 ~~i-~~~~~g~~vIl~gg~~~~~~~~~~~ 109 (253)
T 2ze6_A 82 FEV-DWRKSEEGLILEGGSISLLNCMAKS 109 (253)
T ss_dssp HHH-HTTTTSSEEEEEECCHHHHHHHHHC
T ss_pred HHH-HHHhCCCCeEEeccHHHHHHHHHhc
Confidence 999 8888999999999999999999876
No 8
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=99.45 E-value=6.5e-15 Score=125.16 Aligned_cols=96 Identities=17% Similarity=0.240 Sum_probs=77.4
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHHH--
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEHA-- 211 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~A-- 211 (251)
++|+|+||||||||||+++|.++++..+ ....+++|++|+++|.+|++|||++..+|.+.+..++|++++
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~--------~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~ 73 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF--------GFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQF 73 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE--------EECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe--------EEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEE
Confidence 5689999999999999999999886422 123578999999999999999999999988877767776665
Q ss_pred --------HHHHHHHHHcCCcEEEEcccHHHHHHH
Q 045245 212 --------LRAIDKIIENGHLHIIVGGSNTYIEAL 238 (251)
Q Consensus 212 --------~k~I~eI~~~Gk~PILVGGTglYlkaL 238 (251)
++.+++.+++|+.+|+.+-. -.++.+
T Consensus 74 ~g~~YGt~~~~v~~~l~~g~~vil~id~-~g~~~~ 107 (186)
T 1ex7_A 74 SGNYYGSTVASVKQVSKSGKTCILDIDM-QGVKSV 107 (186)
T ss_dssp TTEEEEEEHHHHHHHHHHTSEEEEECCH-HHHHHH
T ss_pred cCceeeeecceeeehhhCCCEEEecCCH-HHHHHH
Confidence 68899999999999887533 233444
No 9
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=99.36 E-value=9.3e-14 Score=119.46 Aligned_cols=93 Identities=17% Similarity=0.300 Sum_probs=76.1
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHH
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFC 208 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~ 208 (251)
...++++++|+||||||||||++.|++.++..+. ...+.+|++|+++|.+|++|++++..++.+.+..+.|.
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~--------~~vs~TTR~p~~gE~~G~~y~fvs~~~f~~~i~~~~fl 86 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFV--------YPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFL 86 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEE--------CCCCEECSCCCTTCCTTSSCEECCHHHHHHHHHTTCEE
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEE--------eeecccccCCcCCeeccccceeccHHHhhhhhhhhhhh
Confidence 4457789999999999999999999998863222 33567999999999999999999988887766555555
Q ss_pred HHH----------HHHHHHHHHcCCcEEEEc
Q 045245 209 EHA----------LRAIDKIIENGHLHIIVG 229 (251)
Q Consensus 209 e~A----------~k~I~eI~~~Gk~PILVG 229 (251)
+++ ++.+++++++|+.+|+..
T Consensus 87 e~~~~~~n~YGt~~~~v~~~l~~G~~vildi 117 (197)
T 3ney_A 87 EFGSYQGNMFGTKFETVHQIHKQNKIAILDI 117 (197)
T ss_dssp EEEEETTEEEEEEHHHHHHHHHTTCEEEEEC
T ss_pred hhhhhhceecccchhhHHHHHhcCCeEEEEE
Confidence 544 677999999999999965
No 10
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=99.33 E-value=1.7e-13 Score=120.05 Aligned_cols=74 Identities=19% Similarity=0.319 Sum_probs=65.7
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccc---cccCCCCccccCCCCeEE----eccCCCCCccC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLD---IATNKVTASERQGVPHHL----LGFVDPEADYP 203 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~ls---IgTakP~~eEr~gvpHhL----VD~~d~~e~fs 203 (251)
..++.|+|+||||+||||||.+|+++.+ ++|+.|++|+|++.+ |+|++|+ ++||+ +|..++.+.|+
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~~v~~~~~~~liGtak~~------i~h~lEiRGigiid~~~~f~ 104 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQRGH-RLIADDRVDVYQQDEQTIVGAAPPI------LSHLLEIRGLGIIDVMNLFG 104 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEEEEEECSTTCEEEECCSS------STTEEEETTTEEEEHHHHHC
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchhheeecCCceEEEECCcc------ccccccccceeEEcccccCC
Confidence 3467899999999999999999999987 999999999999999 9999986 89999 99998888777
Q ss_pred HHHHHHHH
Q 045245 204 EEEFCEHA 211 (251)
Q Consensus 204 ag~F~e~A 211 (251)
++.|.+.+
T Consensus 105 ~~~f~~~a 112 (205)
T 2qmh_A 105 AGAVREDT 112 (205)
T ss_dssp TTSBCSCC
T ss_pred HHHHHhcC
Confidence 77776543
No 11
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=99.29 E-value=1.8e-13 Score=114.31 Aligned_cols=100 Identities=14% Similarity=0.152 Sum_probs=76.1
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHH
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEH 210 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~ 210 (251)
+++++|+|+||||||||||++.|++.++.. +....+++|++|+++|+.|++|++++..++.+.+..+.|.++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~--------~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~ 77 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETS--------FDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEY 77 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCC--------CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCc--------EEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEE
Confidence 567899999999999999999999988632 234457799999999999999999987766554433333332
Q ss_pred ----------HHHHHHHHHHcCCcEEE---EcccHHHHHHH
Q 045245 211 ----------ALRAIDKIIENGHLHII---VGGSNTYIEAL 238 (251)
Q Consensus 211 ----------A~k~I~eI~~~Gk~PIL---VGGTglYlkaL 238 (251)
..+.+++++++|+.+|+ +.|...+.+..
T Consensus 78 ~~~~~~~yg~~~~~i~~~l~~g~~vild~~~~g~~~~~~~~ 118 (208)
T 3tau_A 78 AEYVGNYYGTPLEYVEEKLAAGVDIFLEIEVQGAMQVRKAM 118 (208)
T ss_dssp EEETTEEEEEEHHHHHHHHHTTCCEEEECCHHHHHHHHHHC
T ss_pred EEEccccCCCcHHHHHHHHHcCCeEEEEeeHHHHHHHHHhC
Confidence 24678889999999999 55655554443
No 12
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=99.18 E-value=2.5e-12 Score=104.91 Aligned_cols=91 Identities=20% Similarity=0.265 Sum_probs=64.4
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHHHH
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFCEH 210 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~e~ 210 (251)
.++++++|+||||||||||++.|++.++.. .+..++++|++|+++|.++++|++++..++...+..+.|.++
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~--------~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~l~~ 74 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDR--------FAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEY 74 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTT--------EECCCCEECSCC---CCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCcc--------EEEeeeccCCCCCccccCCCeeEEeCHHHHHHHHHcCCceEE
Confidence 356799999999999999999999977521 233467789999999999999999886654332222222221
Q ss_pred ----------HHHHHHHHHHcCCcEEEEc
Q 045245 211 ----------ALRAIDKIIENGHLHIIVG 229 (251)
Q Consensus 211 ----------A~k~I~eI~~~Gk~PILVG 229 (251)
..+.++++.++|+.+|+..
T Consensus 75 ~~~~~n~yg~~~~~i~~~l~~g~~vil~i 103 (180)
T 1kgd_A 75 GSHEDAMYGTKLETIRKIHEQGLIAILDV 103 (180)
T ss_dssp EEETTEEEEEEHHHHHHHHHTTCEEEEEC
T ss_pred EEEcCccccccHHHHHHHHHCCCeEEEEE
Confidence 2466888889999999964
No 13
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.09 E-value=1.1e-11 Score=102.52 Aligned_cols=93 Identities=17% Similarity=0.214 Sum_probs=66.7
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHH--
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEE-- 206 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~-- 206 (251)
++.++++|+|+||+||||||+++.|++.++.. ++...+.+|++|+..|..+..|++++..++.+....+.
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~--------~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~ 79 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFPSR--------FRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFL 79 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCTTT--------EEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEE
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCccc--------eeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCE
Confidence 45677899999999999999999999988531 23345789999999999999999987655432111111
Q ss_pred --------HHHHHHHHHHHHHHcCCcEEEEc
Q 045245 207 --------FCEHALRAIDKIIENGHLHIIVG 229 (251)
Q Consensus 207 --------F~e~A~k~I~eI~~~Gk~PILVG 229 (251)
++....+.++++++.|+.+|+.+
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~l~~g~~vi~d~ 110 (204)
T 2qor_A 80 EFDKYANNFYGTLKSEYDLAVGEGKICLFEM 110 (204)
T ss_dssp EEEEETTEEEEEEHHHHHHHHHTTCEEEEEC
T ss_pred EeHHhCCCeecCCHHHHHHHHHcCCeEEEEE
Confidence 11112346777788899988864
No 14
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=98.85 E-value=2e-10 Score=103.38 Aligned_cols=100 Identities=20% Similarity=0.279 Sum_probs=77.9
Q ss_pred ccchhhhhhccCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEe-ccCC
Q 045245 119 NLVYTRVITMNFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLL-GFVD 197 (251)
Q Consensus 119 ~~~~~~~~~~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLV-D~~d 197 (251)
.+.|..+.......+++|+|+|| ||+||.++|.+.++..+ ....+++|++|+++|.+|++|||+ +..+
T Consensus 91 ~~~Ye~V~~~~~~~~r~ivl~GP---gK~tl~~~L~~~~~~~~--------~~~vs~TTR~~R~gE~~G~dY~Fv~s~ee 159 (295)
T 1kjw_A 91 VLSYETVTQMEVHYARPIIILGP---TKDRANDDLLSEFPDKF--------GSCVPHTTRPKREYEIDGRDYHFVSSREK 159 (295)
T ss_dssp CCCEEEEEEEECCSCCCEEEEST---THHHHHHHHHHHCTTTE--------ECCCCEECSCCCTTCCBTTTBEECSCHHH
T ss_pred CCCcceeeeecCCCCCEEEEECC---CHHHHHHHHHhhCccce--------eeeeeecccCCCCccccCceeEecCCHHH
Confidence 34444444455567789999999 79999999999875211 233577999999999999999999 8888
Q ss_pred CCCccCHHHHHHH----------HHHHHHHHHHcCCcEEEEc
Q 045245 198 PEADYPEEEFCEH----------ALRAIDKIIENGHLHIIVG 229 (251)
Q Consensus 198 ~~e~fsag~F~e~----------A~k~I~eI~~~Gk~PILVG 229 (251)
|...+..++|+++ .++.|+++.++|+.+||..
T Consensus 160 f~~~i~~g~flE~~~~~g~~YGt~~~~V~~~~~~G~~vildi 201 (295)
T 1kjw_A 160 MEKDIQAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDV 201 (295)
T ss_dssp HHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEEEECC
T ss_pred HHHHHHCCCcEEEEEEcCcEeeeeHHHHHHHHhcCCeEEEEe
Confidence 7776666666665 4788999999999999964
No 15
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.84 E-value=4.2e-10 Score=91.16 Aligned_cols=90 Identities=14% Similarity=0.166 Sum_probs=61.0
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHH----
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEE---- 206 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~---- 206 (251)
+++.+++|+||+|||||||++.|+..++ .++-.....|+.|+.+++.++.|++.+...+......++
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKALA---------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEH 75 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHSS---------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEE
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC---------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEee
Confidence 5678999999999999999999998875 123334567888888888899998876432211110000
Q ss_pred ------HHHHHHHHHHHHHHcCCcEEEEc
Q 045245 207 ------FCEHALRAIDKIIENGHLHIIVG 229 (251)
Q Consensus 207 ------F~e~A~k~I~eI~~~Gk~PILVG 229 (251)
++....+.+.+..+.|+.+|+.+
T Consensus 76 ~~~~~~~~~~~~~~i~~~l~~g~~vi~d~ 104 (205)
T 3tr0_A 76 ATIYERHYGTEKDWVLRQLKAGRDVLLEI 104 (205)
T ss_dssp EEETTEEEEEEHHHHHHHHHTTCEEEEEC
T ss_pred eeeecccccchHHHHHHHHHcCCeEEEEE
Confidence 00111356778888899888876
No 16
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.79 E-value=4.3e-10 Score=91.84 Aligned_cols=87 Identities=14% Similarity=0.252 Sum_probs=61.4
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCH--------
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPE-------- 204 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsa-------- 204 (251)
+++++|+||+|||||||++.|+..++.. .....+.+|++|+.+|..++.|++.+...+......
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~--------~~~~~~~~tr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~~e~~~ 72 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDS--------FGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQ 72 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGG--------EECCCEEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCcc--------ceEEeeccccCCCCCccCCeeeeecCHHHHHHHHhhcceeeEEE
Confidence 3679999999999999999999877521 123346789999999999999998865433221110
Q ss_pred --HHHHHHHHHHHHHHHHcCCcEEE
Q 045245 205 --EEFCEHALRAIDKIIENGHLHII 227 (251)
Q Consensus 205 --g~F~e~A~k~I~eI~~~Gk~PIL 227 (251)
+.++...++.++++.++|+.+|+
T Consensus 73 ~~~~~yg~~~~~i~~~l~~g~~~il 97 (186)
T 3a00_A 73 FSGNYYGSTVASVKQVSKSGKTCIL 97 (186)
T ss_dssp ETTEEEEEEHHHHHHHHHTTCEEEE
T ss_pred EeceeccCcHHHHHHHHHcCCeEEE
Confidence 11111224678888899998888
No 17
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.74 E-value=3.6e-09 Score=84.79 Aligned_cols=36 Identities=22% Similarity=0.284 Sum_probs=33.0
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
+++.|+|+||+||||||+|+.|+++++..+++.|.+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~ 39 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKE 39 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHH
Confidence 357899999999999999999999999999999886
No 18
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.71 E-value=1.6e-09 Score=92.97 Aligned_cols=93 Identities=12% Similarity=0.108 Sum_probs=62.0
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCc-------
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEAD------- 201 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~------- 201 (251)
+++++.+++|+||+|||||||.+.|+..++.. .+.-..+++|+.|++.|+.++.|++.+...+...
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~-------~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~ 84 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLY-------DTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFL 84 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTT-------TEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEE
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCC-------ceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHH
Confidence 56888999999999999999999999887531 1112456788888888899999999875433221
Q ss_pred --cC-HHHHHHHHHHHHHHHHHcCCcEEEE
Q 045245 202 --YP-EEEFCEHALRAIDKIIENGHLHIIV 228 (251)
Q Consensus 202 --fs-ag~F~e~A~k~I~eI~~~Gk~PILV 228 (251)
.. .+.++...++.+++++++|+..|+.
T Consensus 85 E~~~~~~~~yg~~~~~v~~~l~~G~illLD 114 (219)
T 1s96_A 85 EHAEVFGNYYGTSREAIEQVLATGVDVFLD 114 (219)
T ss_dssp EEEEETTEEEEEEHHHHHHHHTTTCEEEEE
T ss_pred HHHHHHhccCCCCHHHHHHHHhcCCeEEEE
Confidence 00 0111111234577777788887776
No 19
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=98.69 E-value=1.1e-09 Score=99.01 Aligned_cols=90 Identities=19% Similarity=0.269 Sum_probs=69.4
Q ss_pred ccCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEe-ccCCCCCccCHHH
Q 045245 128 MNFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLL-GFVDPEADYPEEE 206 (251)
Q Consensus 128 ~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLV-D~~d~~e~fsag~ 206 (251)
...+.+++|+|+|| ||+||.++|.++++...- ..++++|++|+++|.+|++|||+ +.+.+...+..++
T Consensus 95 ~~~~~~RpvVl~Gp---~K~tl~~~Ll~~~p~~f~--------~sVs~TTR~pR~gE~dG~dY~Fv~s~e~fe~~i~~~~ 163 (292)
T 3tvt_A 95 LSINYTRPVIILGP---LKDRINDDLISEYPDKFG--------SCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHL 163 (292)
T ss_dssp EECSSCCCEEEEST---THHHHHHHHHHHCTTTEE--------CCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTC
T ss_pred ccCCCCCeEEEeCC---CHHHHHHHHHHhChhhcc--------ccccCCccCCcCCccCCccccccCCHHHHHHHHhcCc
Confidence 44466788999999 499999999999874322 23577999999999999999999 4444555444444
Q ss_pred HHHH----------HHHHHHHHHHcCCcEEEE
Q 045245 207 FCEH----------ALRAIDKIIENGHLHIIV 228 (251)
Q Consensus 207 F~e~----------A~k~I~eI~~~Gk~PILV 228 (251)
|+++ .++.|++++++|+.+||.
T Consensus 164 flE~a~~~gn~YGT~~~~V~~~~~~gk~viLd 195 (292)
T 3tvt_A 164 FIEAGQYNDNLYGTSVASVREVAEKGKHCILD 195 (292)
T ss_dssp EEEEEEETTEEEEEEHHHHHHHHHHTCEEEEC
T ss_pred eEEEEEEccceeEEehHHHHHHHHcCCcEEEe
Confidence 4444 478899999999999994
No 20
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.67 E-value=2.4e-09 Score=89.02 Aligned_cols=90 Identities=14% Similarity=0.152 Sum_probs=58.9
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHH---
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEF--- 207 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F--- 207 (251)
+++++++|+||+|||||||++.|...+.. . .-...+.+|++|+.+|..+++|++++...+...+..+.|
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~-~-------~~~~v~~ttr~~~~g~~~g~~~~~~~~~~~~~~i~~~~~l~~ 73 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSS-I-------FGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEH 73 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTT-T-------EEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCch-h-------ceeeeeeeccCCCCcccCCceEEEccHHHHHHHHHcCCCEee
Confidence 45678999999999999999999987751 1 123345678899999999999998876543322111111
Q ss_pred -------HHHHHHHHHHHHHcCCcEEEE
Q 045245 208 -------CEHALRAIDKIIENGHLHIIV 228 (251)
Q Consensus 208 -------~e~A~k~I~eI~~~Gk~PILV 228 (251)
+....+.+.+..+.++..++.
T Consensus 74 ~~~~~n~~g~~~~~i~~~~~~~~~~~~~ 101 (198)
T 1lvg_A 74 AEFSGNLYGTSKEAVRAVQAMNRICVLD 101 (198)
T ss_dssp EEETTEEEEEEHHHHHHHHHTTCEEEEE
T ss_pred eeecCccCCCCHHHHHHHHHcCCcEEEE
Confidence 111245566666777777764
No 21
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=98.51 E-value=3.1e-08 Score=98.33 Aligned_cols=92 Identities=20% Similarity=0.274 Sum_probs=73.7
Q ss_pred ccCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEe-ccCCCCCccCHHH
Q 045245 128 MNFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLL-GFVDPEADYPEEE 206 (251)
Q Consensus 128 ~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLV-D~~d~~e~fsag~ 206 (251)
+....+++|+|+||+ |+||.++|.+.++..+ ..-.+++|++|+++|.+|++|||+ +..+|...+..++
T Consensus 526 ~~~~~~r~vvl~GP~---K~tl~~~L~~~~~~~~--------~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~~i~~~~ 594 (721)
T 2xkx_A 526 MEVHYARPIIILGPT---KDRANDDLLSEFPDKF--------GSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHK 594 (721)
T ss_pred ccCCCCCEEEEECCC---HHHHHHHHHHhCccce--------eecccccccCCCCCccCCceeEEecCHHHHHHHHhcCC
Confidence 344567899999994 9999999999875211 123577999999999999999999 8888887766666
Q ss_pred HHHH----------HHHHHHHHHHcCCcEEEEcc
Q 045245 207 FCEH----------ALRAIDKIIENGHLHIIVGG 230 (251)
Q Consensus 207 F~e~----------A~k~I~eI~~~Gk~PILVGG 230 (251)
|+++ .++.|++++++|+.+||..-
T Consensus 595 flE~~~~~g~~YGt~~~~v~~~~~~g~~~ildi~ 628 (721)
T 2xkx_A 595 FIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVS 628 (721)
T ss_pred ceEEEEECCccceeeHHHHHHHHHCCCcEEEeCC
Confidence 6655 47889999999999999763
No 22
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.50 E-value=2.6e-07 Score=73.24 Aligned_cols=35 Identities=11% Similarity=0.284 Sum_probs=29.5
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcCCceE--ecCCc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFSGEAI--NSNKI 167 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VI--S~Ds~ 167 (251)
+++|+|+|++||||||+|+.|+++++...+ +.|.+
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~ 39 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSL 39 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchH
Confidence 468999999999999999999999986544 56654
No 23
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.49 E-value=7.6e-08 Score=80.60 Aligned_cols=99 Identities=14% Similarity=0.225 Sum_probs=59.3
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHH-HhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHH-
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLA-IHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEE- 206 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LA-k~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~- 206 (251)
..+++.+++|+||+|||||||++.|+ ..++. ++.+.+++|++|+.++..+++|++.+...+......+.
T Consensus 23 ~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~---------~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~ 93 (231)
T 3lnc_A 23 LKSVGVILVLSSPSGCGKTTVANKLLEKQKNN---------IVKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCSNGEI 93 (231)
T ss_dssp CEECCCEEEEECSCC----CHHHHHHC----C---------EEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCE
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC---------cccccccCCCCCCccccCCCeEEEecHHHhhhhhhcCce
Confidence 34667899999999999999999999 76542 24566889999999999999998876443221100000
Q ss_pred ---------HHHHHHHHHHHHHHcCCcEEEE---cccHHHHH
Q 045245 207 ---------FCEHALRAIDKIIENGHLHIIV---GGSNTYIE 236 (251)
Q Consensus 207 ---------F~e~A~k~I~eI~~~Gk~PILV---GGTglYlk 236 (251)
++....+.+++..++|+.+|+. .|...+.+
T Consensus 94 ~~~~~~~~~~~~~~~~~i~~~~~~~~~vild~~~~g~~~~~~ 135 (231)
T 3lnc_A 94 IEHAEVFGNFYGVPRKNLEDNVDKGVSTLLVIDWQGAFKFME 135 (231)
T ss_dssp EEEEEETTEEEEEECTTHHHHHHHTCEEEEECCHHHHHHHHH
T ss_pred ehhhhhccccCCCCHHHHHHHHHcCCeEEEEcCHHHHHHHHH
Confidence 0001124466777778887773 44444443
No 24
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=98.47 E-value=1e-07 Score=74.95 Aligned_cols=35 Identities=20% Similarity=0.363 Sum_probs=31.3
Q ss_pred CeEEEEEcCCccCHHHHHHHHHH-hcCCceEecCCc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAI-HFSGEAINSNKI 167 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk-~l~~~VIS~Ds~ 167 (251)
+++|+|+||+||||||+|+.|++ .++..+++.|.+
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~~ 37 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDY 37 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHHH
Confidence 46899999999999999999999 688889988764
No 25
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=98.44 E-value=1.5e-07 Score=75.24 Aligned_cols=38 Identities=29% Similarity=0.387 Sum_probs=34.5
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
++++++|+|+|++||||||+++.|+++++..+++.|.+
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~ 39 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAF 39 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHH
Confidence 35678999999999999999999999999999998875
No 26
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.41 E-value=3.1e-08 Score=79.96 Aligned_cols=91 Identities=15% Similarity=0.194 Sum_probs=53.8
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCc---------
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEAD--------- 201 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~--------- 201 (251)
+++.+++|+||+||||||+++.|++.+... .+ ......++.|..++..++.+.+.+...+...
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~---~~-----~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDPSTS---YK-----YSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEY 75 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCTTCC---EE-----CCCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhhCCC---eE-----EecccccCCCCCCccCCCceEEcCHHHHHHHHHcCCeEEE
Confidence 567899999999999999999999887211 11 0123345666656666777777653221100
Q ss_pred --cCHHHHHHHHHHHHHHHHHcCCcEEEEcc
Q 045245 202 --YPEEEFCEHALRAIDKIIENGHLHIIVGG 230 (251)
Q Consensus 202 --fsag~F~e~A~k~I~eI~~~Gk~PILVGG 230 (251)
+. +..+....+.+++..+.|+.+|+.+.
T Consensus 76 ~~~~-~~~~g~~~~~i~~~l~~g~~vv~d~~ 105 (207)
T 2j41_A 76 AEYV-GNYYGTPVQYVKDTMDEGHDVFLEIE 105 (207)
T ss_dssp EEET-TEEEEEEHHHHHHHHHTTCEEEEECC
T ss_pred EeEC-CeecCCCHHHHHHHHHcCCeEEEEEC
Confidence 00 00000123456666677887777653
No 27
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=98.41 E-value=1.9e-07 Score=73.91 Aligned_cols=37 Identities=24% Similarity=0.472 Sum_probs=33.3
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
.++++|+|.|++||||||+|+.|++.++..+++.|.+
T Consensus 4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~ 40 (194)
T 1qf9_A 4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDL 40 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred CcCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHH
Confidence 3457999999999999999999999999999998764
No 28
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=98.40 E-value=2.2e-07 Score=72.52 Aligned_cols=34 Identities=12% Similarity=0.220 Sum_probs=31.8
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
++|+|+||+||||||+++.|+++++..+++.|.+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~ 35 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSF 35 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCccc
Confidence 4899999999999999999999999999999875
No 29
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.39 E-value=2.1e-07 Score=76.07 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=33.8
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
.++++|+|+|++||||||+|+.|++.++..+++.|.+
T Consensus 16 ~~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~ 52 (202)
T 3t61_A 16 RFPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDAL 52 (202)
T ss_dssp CCSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcC
Confidence 3467999999999999999999999999999999876
No 30
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=98.37 E-value=9.6e-08 Score=75.69 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=27.1
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcC-----CceEecC
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFS-----GEAINSN 165 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~D 165 (251)
++|+|+|++||||||+++.|+++++ ...++.|
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~ 38 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYG 38 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECC
Confidence 5899999999999999999999987 4455443
No 31
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=98.36 E-value=2.1e-07 Score=74.50 Aligned_cols=38 Identities=16% Similarity=0.444 Sum_probs=34.4
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
+.++++|+|.|++||||||+|+.|+++++..+++.|.+
T Consensus 6 m~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~ 43 (196)
T 2c95_A 6 LKKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDL 43 (196)
T ss_dssp HTTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred CcCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHH
Confidence 35678999999999999999999999999999998864
No 32
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=98.35 E-value=2.6e-07 Score=73.27 Aligned_cols=36 Identities=22% Similarity=0.423 Sum_probs=32.8
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
++++|+|.|++||||||+|+.|+++++..+++.|.+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~ 37 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGEL 37 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHH
Confidence 357899999999999999999999999999999875
No 33
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.35 E-value=4.2e-07 Score=72.25 Aligned_cols=38 Identities=13% Similarity=0.380 Sum_probs=34.2
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
..++.+++|+||+||||||+++.|++.++..+++.|.+
T Consensus 5 ~~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~ 42 (175)
T 1knq_A 5 NHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFL 42 (175)
T ss_dssp CTTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGG
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccc
Confidence 35578999999999999999999999999999998875
No 34
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.33 E-value=3.1e-07 Score=75.38 Aligned_cols=39 Identities=23% Similarity=0.244 Sum_probs=33.7
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
...+++.|+|+||+||||||+++.|++.++..+++.|.+
T Consensus 21 ~~~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~ 59 (199)
T 3vaa_A 21 QSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWY 59 (199)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHH
T ss_pred ecCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHH
Confidence 345678999999999999999999999999999999875
No 35
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.31 E-value=1.9e-07 Score=82.67 Aligned_cols=85 Identities=13% Similarity=0.151 Sum_probs=52.7
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc--CCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHH
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF--SGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEF 207 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l--~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F 207 (251)
..++.+|+|+||+||||||+|+.|++++ +..+||+|.+. ..+ |...++.. . +. +....+ .+.|
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R--~~~------~~~~~~~~--~--~~--~~a~~~-~~~~ 94 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFK--QQH------PNFDELVK--L--YE--KDVVKH-VTPY 94 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHH--TTS------TTHHHHHH--H--HG--GGCHHH-HHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhH--Hhc------hhhHHHHH--H--cc--chhhhh-hhHH
Confidence 3567899999999999999999999998 56788887642 100 11111000 0 00 000011 2445
Q ss_pred HHH-HHHHHHHHHHcCCcEEEEc
Q 045245 208 CEH-ALRAIDKIIENGHLHIIVG 229 (251)
Q Consensus 208 ~e~-A~k~I~eI~~~Gk~PILVG 229 (251)
+.. ..+.+++.++.|+.+||.|
T Consensus 95 ~~~~~~~~v~~~l~~g~~vIld~ 117 (287)
T 1gvn_B 95 SNRMTEAIISRLSDQGYNLVIEG 117 (287)
T ss_dssp HHHHHHHHHHHHHHHTCCEEECC
T ss_pred HHHHHHHHHHHHHhcCCeEEEEC
Confidence 554 4567788888899988854
No 36
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=98.31 E-value=1.5e-07 Score=75.42 Aligned_cols=37 Identities=19% Similarity=0.433 Sum_probs=33.6
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
+++++|+|+|++||||||+|+.|+++++..+++.|.+
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~ 46 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGEL 46 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHH
Confidence 3457999999999999999999999999999998875
No 37
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.30 E-value=3.4e-07 Score=72.30 Aligned_cols=36 Identities=25% Similarity=0.464 Sum_probs=32.1
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
++.+|+|+||+||||||+++.|++.++..++..|.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~ 38 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQE 38 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHH
Confidence 356899999999999999999999999888888754
No 38
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.30 E-value=2.4e-07 Score=74.11 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=31.7
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
+.|+|+||+||||||+|+.||++++...++.|.+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~ 38 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFL 38 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHH
Confidence 4799999999999999999999999999999875
No 39
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=98.30 E-value=3.4e-07 Score=73.08 Aligned_cols=37 Identities=19% Similarity=0.322 Sum_probs=32.6
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
.++..|+|.|++||||||+++.|+++++..+++.|.+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~ 38 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDI 38 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHH
Confidence 3567899999999999999999999999999988754
No 40
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=98.29 E-value=5.2e-07 Score=73.37 Aligned_cols=38 Identities=21% Similarity=0.367 Sum_probs=34.2
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
..++++|+|+|++||||||+++.|+++++..++++|.+
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~ 49 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDL 49 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHH
Confidence 35568999999999999999999999999999999864
No 41
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=98.28 E-value=4e-07 Score=73.19 Aligned_cols=37 Identities=11% Similarity=0.195 Sum_probs=33.1
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
..++.+|+|+|++||||||+++.|++. +..+++.|.+
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~ 41 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDAL 41 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHH
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHH
Confidence 356789999999999999999999998 9999999975
No 42
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=98.28 E-value=5.5e-07 Score=73.48 Aligned_cols=38 Identities=18% Similarity=0.324 Sum_probs=34.0
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
..++.+|+|+|++||||||+|+.|++.++..+++.|.+
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~ 54 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGEL 54 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHH
Confidence 35667999999999999999999999999999998764
No 43
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.27 E-value=3.8e-07 Score=73.08 Aligned_cols=34 Identities=15% Similarity=0.271 Sum_probs=31.9
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
++|+|+|++||||||+|+.|+++++..+++.|.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~ 36 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVA 36 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchH
Confidence 4699999999999999999999999999999975
No 44
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=98.27 E-value=5.2e-07 Score=73.38 Aligned_cols=39 Identities=21% Similarity=0.251 Sum_probs=34.6
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHh-cCCceEecCCc
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIH-FSGEAINSNKI 167 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~-l~~~VIS~Ds~ 167 (251)
..++++.|+|+|++||||||+++.|+++ ++..++++|.+
T Consensus 6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~ 45 (184)
T 1y63_A 6 EQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKL 45 (184)
T ss_dssp CCCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHH
Confidence 3456789999999999999999999999 79999999865
No 45
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=98.26 E-value=5.2e-07 Score=69.45 Aligned_cols=33 Identities=21% Similarity=0.384 Sum_probs=29.8
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
++|+|+||+||||||+|+.| ++++..+++.|.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~ 34 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDV 34 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHH
Confidence 58999999999999999999 9999999987643
No 46
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.25 E-value=9.9e-07 Score=74.39 Aligned_cols=58 Identities=22% Similarity=0.303 Sum_probs=44.9
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEecc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGF 195 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~ 195 (251)
.+++.+++|+||+|||||||++.|+..++ ..+.+ +.++.|+.|.+.++.++.|.+.+.
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~p------G~i~~--g~~~~~~~~~~~~~~~i~~~~~~~ 77 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEFP------NYFYF--SVSCTTRKKREKEKEGVDYYFIDK 77 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHST------TTEEE--CCCEECSCCCSSCCBTTTBEECCH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhCC------CcEEE--eecccCCCCCcccccCCeEEECCH
Confidence 36678999999999999999999998773 22222 667788888777888898888764
No 47
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=98.24 E-value=4.3e-07 Score=71.46 Aligned_cols=34 Identities=24% Similarity=0.419 Sum_probs=31.9
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
++|+|+|++||||||+|+.|+++++..+++.|.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~ 36 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIF 36 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHH
Confidence 5799999999999999999999999999999875
No 48
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=98.23 E-value=8.1e-07 Score=75.80 Aligned_cols=42 Identities=19% Similarity=0.315 Sum_probs=34.7
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcCCc----------eEecCCcceecc
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSGE----------AINSNKIQVYKG 172 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~----------VIS~Ds~QvYk~ 172 (251)
+..++.+|+|+|++||||||+|+.|+++++.. ++++|.+ |+.
T Consensus 18 ~~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~--~~~ 69 (252)
T 1uj2_A 18 NGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSF--YRV 69 (252)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGG--BCC
T ss_pred cCCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcc--ccc
Confidence 34566799999999999999999999999976 7999986 554
No 49
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.23 E-value=6e-07 Score=73.78 Aligned_cols=37 Identities=22% Similarity=0.271 Sum_probs=33.5
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcc
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQ 168 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~Q 168 (251)
++.+|+|.||+||||||+++.|++.++...+..|.+.
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~ 40 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIY 40 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCccee
Confidence 3468999999999999999999999999999998863
No 50
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.22 E-value=7.1e-07 Score=71.45 Aligned_cols=37 Identities=24% Similarity=0.274 Sum_probs=33.4
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
.+++.|+|+|++||||||+++.|+++++..+++.|.+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~ 45 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDL 45 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHH
Confidence 4567899999999999999999999999999998864
No 51
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=98.22 E-value=5.8e-07 Score=75.05 Aligned_cols=37 Identities=24% Similarity=0.426 Sum_probs=32.6
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
.+++.|+|.|++||||||+|+.|+++++..+++.|.+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~ 41 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDL 41 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHH
Confidence 4567899999999999999999999999999998764
No 52
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.22 E-value=1.2e-06 Score=75.34 Aligned_cols=37 Identities=27% Similarity=0.309 Sum_probs=33.5
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
+++.+|+|.||+||||||+++.|+++++...+..|.+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i 61 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAI 61 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCce
Confidence 4567999999999999999999999999988887775
No 53
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.20 E-value=1.1e-06 Score=72.17 Aligned_cols=38 Identities=24% Similarity=0.277 Sum_probs=33.0
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
..++.+|+|+||+||||||+++.|++.++...+..|.+
T Consensus 26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~ 63 (200)
T 4eun_A 26 GEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAF 63 (200)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGG
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEccccc
Confidence 35678999999999999999999999999888888765
No 54
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.20 E-value=1.9e-06 Score=79.95 Aligned_cols=39 Identities=15% Similarity=0.209 Sum_probs=35.3
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
..+++.+|+|+|++||||||+|+.|+++++..+|+.|.+
T Consensus 254 ~~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~ 292 (416)
T 3zvl_A 254 LSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTL 292 (416)
T ss_dssp CCSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGS
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchH
Confidence 445678999999999999999999999999999998875
No 55
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=98.19 E-value=4.3e-07 Score=73.70 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=30.9
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSN 165 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D 165 (251)
.+.++++|+|+|++||||||+++.|+++++...+++|
T Consensus 6 ~~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~ 42 (212)
T 2wwf_A 6 DKKKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVK 42 (212)
T ss_dssp CCBCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred hhhcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 4456789999999999999999999999876555544
No 56
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.19 E-value=2.2e-06 Score=73.52 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=32.2
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcC--CceEecCCc
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS--GEAINSNKI 167 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~--~~VIS~Ds~ 167 (251)
...++.+|+|+||+||||||+|+.|++.++ ..++..|.+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 345678999999999999999999999997 346666654
No 57
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.19 E-value=9.3e-07 Score=72.25 Aligned_cols=39 Identities=28% Similarity=0.290 Sum_probs=33.1
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcC--CceEecCCc
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS--GEAINSNKI 167 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~--~~VIS~Ds~ 167 (251)
+.+++.+++|.||+|||||||++.|+..++ ..+++.|.+
T Consensus 2 ~~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~ 42 (211)
T 3asz_A 2 SAPKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHY 42 (211)
T ss_dssp ---CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGC
T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCcc
Confidence 346678999999999999999999999988 788998875
No 58
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.19 E-value=7.2e-07 Score=70.70 Aligned_cols=34 Identities=24% Similarity=0.198 Sum_probs=30.4
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcC-----CceEecCC
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFS-----GEAINSNK 166 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds 166 (251)
+++|+|+||+||||||+++.|+++++ ..+++.|.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~ 41 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGS 41 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHH
Confidence 46899999999999999999999998 77888764
No 59
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=98.18 E-value=1.1e-06 Score=75.24 Aligned_cols=38 Identities=16% Similarity=0.225 Sum_probs=34.4
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
+.++.+|+|+||+||||||+|+.|+++++..++++|.+
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~ 63 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDL 63 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHH
Confidence 45678999999999999999999999999999998764
No 60
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=98.16 E-value=3.9e-06 Score=70.61 Aligned_cols=34 Identities=15% Similarity=0.144 Sum_probs=29.4
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEe
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAIN 163 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS 163 (251)
..+.++|+|+||+||||||+++.||++++...+.
T Consensus 3 ~m~~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 3 AMKQIIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp ---CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred CCCCeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 3456799999999999999999999999999885
No 61
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.15 E-value=1.5e-06 Score=71.19 Aligned_cols=37 Identities=27% Similarity=0.445 Sum_probs=34.0
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc-CCceEecCCc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF-SGEAINSNKI 167 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l-~~~VIS~Ds~ 167 (251)
+++.+|+|+||+||||||+++.|++.+ +..++++|.+
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~ 56 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDF 56 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCcc
Confidence 556899999999999999999999998 7899999986
No 62
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=98.14 E-value=1.3e-06 Score=72.33 Aligned_cols=36 Identities=14% Similarity=0.324 Sum_probs=32.7
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
++..|+|.|++||||||+|+.|+++++..+++.|.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~ 38 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDM 38 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHH
Confidence 456899999999999999999999999999998764
No 63
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=98.14 E-value=1.3e-06 Score=71.66 Aligned_cols=33 Identities=15% Similarity=0.299 Sum_probs=30.5
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
.|+|+||+||||||+|+.|+++++..++++|.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~ 34 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDM 34 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHH
Confidence 588999999999999999999999999998764
No 64
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=98.14 E-value=1.6e-06 Score=75.04 Aligned_cols=39 Identities=28% Similarity=0.452 Sum_probs=34.7
Q ss_pred ccCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245 128 MNFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNK 166 (251)
Q Consensus 128 ~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds 166 (251)
....++++|+|.||+||||+|.|..|+++++...||...
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGd 62 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGD 62 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHH
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHH
Confidence 345788999999999999999999999999999998743
No 65
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=98.13 E-value=1.4e-06 Score=71.58 Aligned_cols=33 Identities=15% Similarity=0.277 Sum_probs=30.5
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
.|+|+||+||||||+|+.|+++++..++++|.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~ 34 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTGDM 34 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHH
Confidence 588999999999999999999999999999764
No 66
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.13 E-value=3.2e-06 Score=69.92 Aligned_cols=56 Identities=21% Similarity=0.253 Sum_probs=41.2
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEec
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLG 194 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD 194 (251)
..++.+++|+||+|||||||++.|+..+.... -..++.+++|...++.++.|.+.+
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~---------~~~~~~~~~~~~~~~~~i~~~~q~ 72 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERIPNLH---------FSVSATTRAPRPGEVDGVDYHFID 72 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHSTTCE---------ECCCEESSCCCTTCCBTTTBEECC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCCceE---------EcccccccCCcccccCCCeeEecC
Confidence 46778999999999999999999998875111 123566777766677788887754
No 67
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.12 E-value=3.6e-06 Score=73.81 Aligned_cols=40 Identities=28% Similarity=0.381 Sum_probs=34.5
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKG 172 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~ 172 (251)
.++.+|+|.||+||||||+++.|+++++...++.|.+ |+.
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~--~r~ 46 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAM--YRI 46 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH--HHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcH--HHH
Confidence 4567999999999999999999999999999998876 554
No 68
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.12 E-value=1.6e-06 Score=68.65 Aligned_cols=35 Identities=20% Similarity=0.444 Sum_probs=32.1
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
...|+|+|++||||||+|+.|+++++.+++..|.+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~ 41 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMI 41 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHH
Confidence 46899999999999999999999999999999875
No 69
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=98.11 E-value=1.4e-06 Score=70.30 Aligned_cols=34 Identities=21% Similarity=0.327 Sum_probs=32.1
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
++|+|+|++||||||+++.|++.++..+++.|.+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~ 36 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAAALGVPYLSSGLL 36 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceeccchH
Confidence 3899999999999999999999999999999976
No 70
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=98.11 E-value=1.5e-06 Score=71.75 Aligned_cols=35 Identities=20% Similarity=0.330 Sum_probs=32.0
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
++.+|+|+|++||||||+++.|++ ++..++..|.+
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~ 37 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDADII 37 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHH
Confidence 467999999999999999999998 89999999875
No 71
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.11 E-value=1.8e-06 Score=67.84 Aligned_cols=33 Identities=12% Similarity=0.237 Sum_probs=31.0
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
.|+|.|++||||||+|+.|+++++..+++.|.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~ 34 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEE 34 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECcHH
Confidence 689999999999999999999999999998875
No 72
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=98.10 E-value=1.2e-06 Score=72.78 Aligned_cols=37 Identities=19% Similarity=0.257 Sum_probs=32.6
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
++++.|+|+||+||||||+++.|+++++...++.|.+
T Consensus 3 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~ 39 (222)
T 1zak_A 3 ADPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDL 39 (222)
T ss_dssp CCSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHH
Confidence 3457899999999999999999999999888887754
No 73
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.07 E-value=1.8e-06 Score=70.13 Aligned_cols=33 Identities=15% Similarity=0.291 Sum_probs=30.8
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
++|+|+|++||||||+++.|++ ++..++++|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~ 34 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKL 34 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHH
Confidence 5799999999999999999999 99999999875
No 74
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=98.06 E-value=8e-06 Score=70.38 Aligned_cols=37 Identities=24% Similarity=0.318 Sum_probs=30.0
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHh---cCCceE--ecCCc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIH---FSGEAI--NSNKI 167 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~---l~~~VI--S~Ds~ 167 (251)
.++++|+|+|++||||||+|+.|++. .+..++ +.|.+
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 34679999999999999999999998 666666 55543
No 75
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=98.04 E-value=2.8e-06 Score=68.45 Aligned_cols=34 Identities=12% Similarity=0.222 Sum_probs=28.7
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc-CCceEec
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF-SGEAINS 164 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l-~~~VIS~ 164 (251)
.++++|+|.|++||||||+++.|++++ +..++..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~ 36 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESIPANTIKYL 36 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEE
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEE
Confidence 356899999999999999999999998 3556654
No 76
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=98.04 E-value=2.5e-06 Score=71.07 Aligned_cols=35 Identities=14% Similarity=0.282 Sum_probs=32.1
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
+..|+|.|++||||||+|+.|+++++..+++.|.+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~l 39 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDM 39 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHH
Confidence 46799999999999999999999999999998765
No 77
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=98.04 E-value=3.2e-06 Score=67.10 Aligned_cols=31 Identities=16% Similarity=0.044 Sum_probs=28.6
Q ss_pred EEEEEcCCccCHHHHHHHHHHhc---CCceEecC
Q 045245 135 VVFVMGATATGKTKLSIDLAIHF---SGEAINSN 165 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l---~~~VIS~D 165 (251)
+|+|.|++||||||+++.|++++ +..++++|
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 68999999999999999999998 78888876
No 78
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=98.03 E-value=1.3e-06 Score=77.74 Aligned_cols=37 Identities=16% Similarity=0.372 Sum_probs=30.4
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcC-----CceEecCCcc
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFS-----GEAINSNKIQ 168 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds~Q 168 (251)
++.+|+|+||+||||||+|+.|++.++ ..+|++|.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 567999999999999999999999887 6899999973
No 79
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=98.02 E-value=2.7e-06 Score=67.42 Aligned_cols=31 Identities=19% Similarity=0.428 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcCCceE
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAI 162 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VI 162 (251)
++++|+|.|++||||||+|+.|+++++..++
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 5679999999999999999999999998777
No 80
>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A
Probab=98.02 E-value=4.2e-06 Score=78.09 Aligned_cols=77 Identities=17% Similarity=0.159 Sum_probs=59.6
Q ss_pred cchhhhhhccCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCC
Q 045245 120 LVYTRVITMNFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPE 199 (251)
Q Consensus 120 ~~~~~~~~~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~ 199 (251)
+.|-.+.-...+.+++|+|+||+| +||.++|.++++....+ +|+.|+++|.+|++|||+
T Consensus 219 ~~YE~V~~~~~~~~r~iVlsGPsg---~tl~~~L~~~~p~~~~~------------~tr~pR~gE~dG~~Y~Fv------ 277 (391)
T 3tsz_A 219 PAYERVVLREAGFLRPVTIFGPIA---DVAREKLAREEPDIYQI------------AKSEPRDAGTDQRSSGII------ 277 (391)
T ss_dssp CSEEEEEEEECSSCCCEEEESTTH---HHHHHHHHHHCTTTEEE------------CCCCCCCSSSCCC--CCC------
T ss_pred CCcceEECcCCCCCCEEEEECCCH---HHHHHHHHhhCcccccc------------ccCCCCCcccCCccCCcC------
Confidence 334444445567889999999998 89999999988643221 578999999999999998
Q ss_pred CccCHHHHHHHHHHHHHHHHHcCCcEEEE
Q 045245 200 ADYPEEEFCEHALRAIDKIIENGHLHIIV 228 (251)
Q Consensus 200 e~fsag~F~e~A~k~I~eI~~~Gk~PILV 228 (251)
.++.|++++++|+.+||.
T Consensus 278 -----------~~~~V~~~~~~Gk~~iLd 295 (391)
T 3tsz_A 278 -----------RLHTIKQIIDQDKHALLD 295 (391)
T ss_dssp -----------CHHHHHHHHTTTCEEEEC
T ss_pred -----------cHHHHHHHHHcCCEEEEE
Confidence 368899999999999993
No 81
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=98.01 E-value=1.5e-06 Score=70.42 Aligned_cols=31 Identities=16% Similarity=0.260 Sum_probs=26.7
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcCCc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGE 160 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~ 160 (251)
+.++++|+|.|++||||||+++.|+++++..
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3567899999999999999999999988643
No 82
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.01 E-value=2.7e-06 Score=69.41 Aligned_cols=33 Identities=15% Similarity=0.250 Sum_probs=30.7
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
.+|+|.||+||||||+++.|++ +|..++.+|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~ 35 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVV 35 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccchHHH
Confidence 6899999999999999999988 89999999875
No 83
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=98.01 E-value=2.8e-06 Score=71.59 Aligned_cols=39 Identities=23% Similarity=0.380 Sum_probs=34.4
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
+..-..+|+|+|++||||||+++.|++.++.+++.+|.+
T Consensus 8 ~~~~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~ 46 (192)
T 2grj_A 8 HHHHHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRI 46 (192)
T ss_dssp --CCEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred ccccceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHH
Confidence 344567999999999999999999999999999999987
No 84
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=98.00 E-value=3.7e-06 Score=70.74 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=33.0
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
.++..|+|.|++||||||+|+.|+++++..+++.|.+
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~l 50 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDM 50 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHH
Confidence 4457899999999999999999999999999998753
No 85
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.98 E-value=5.9e-06 Score=66.11 Aligned_cols=30 Identities=17% Similarity=0.197 Sum_probs=26.4
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGE 160 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~ 160 (251)
+++.+++|+||+||||||+++.|+...+..
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g 36 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVP 36 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCC
Confidence 567899999999999999999999986544
No 86
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.96 E-value=4.4e-06 Score=69.06 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=30.4
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
.|+|.||+||||||+|+.|+++++..+++.|.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~ 34 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDM 34 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHH
Confidence 589999999999999999999999999998764
No 87
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.95 E-value=5e-06 Score=68.24 Aligned_cols=33 Identities=24% Similarity=0.312 Sum_probs=28.7
Q ss_pred hhccCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 126 ITMNFNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 126 ~~~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.+++..++.+|+|.||+||||||+++.|++.++
T Consensus 18 ~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 18 QRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp HHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345567789999999999999999999999883
No 88
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.95 E-value=3.9e-06 Score=71.01 Aligned_cols=37 Identities=19% Similarity=0.342 Sum_probs=31.2
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
.++.+|+|.||+||||||+++.|+++++...++.|.+
T Consensus 25 ~~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i 61 (246)
T 2bbw_A 25 SKLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHF 61 (246)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHH
Confidence 3467999999999999999999999998877766544
No 89
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=97.93 E-value=4.7e-06 Score=71.81 Aligned_cols=35 Identities=20% Similarity=0.364 Sum_probs=31.0
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhc-CCceEecCCc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHF-SGEAINSNKI 167 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l-~~~VIS~Ds~ 167 (251)
+++|+|+|++||||||+|+.|++++ +..+++.|.+
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~ 37 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDY 37 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEecccHH
Confidence 4689999999999999999999985 7889999853
No 90
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.92 E-value=5e-06 Score=73.02 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=32.8
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
+++.+|+|+|++||||||+|+.|+ +++..+|++|.+
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~ 108 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHL 108 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHH
Confidence 456899999999999999999999 689999999986
No 91
>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}
Probab=97.91 E-value=4.1e-06 Score=80.68 Aligned_cols=76 Identities=16% Similarity=0.128 Sum_probs=50.2
Q ss_pred chhhhhhccCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCC
Q 045245 121 VYTRVITMNFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEA 200 (251)
Q Consensus 121 ~~~~~~~~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e 200 (251)
.|-.+.-.....+++|+|+||+|+| |.++|.++++....+ .+|+ |+++|.+|++|||
T Consensus 212 ~YEeV~~~~~~~~r~iVlsGPsG~G---l~~~Ll~~~p~~f~s-----------~~TR-pR~gE~dG~~Y~F-------- 268 (468)
T 3shw_A 212 AYERVVLREAGFLRPVTIFGPIADV---AREKLAREEPDIYQI-----------AKSE-PRDAGTDQRSSGI-------- 268 (468)
T ss_dssp SEEEEEEECCSSCCCEEEESTTHHH---HHHHHHHHCTTTEEE-----------CCCB-C----------CB--------
T ss_pred CcceeEcccCCCCCEEEEECCCHHH---HHHHHHHhCCCceee-----------ecCC-CCCcccccccCCc--------
Confidence 3444444556778999999999999 999999888643332 2488 9999999999998
Q ss_pred ccCHHHHHHHHHHHHHHHHHcCCcEEEE
Q 045245 201 DYPEEEFCEHALRAIDKIIENGHLHIIV 228 (251)
Q Consensus 201 ~fsag~F~e~A~k~I~eI~~~Gk~PILV 228 (251)
..++.|++++++|+.+||.
T Consensus 269 ---------Ts~~~V~~vl~~Gk~~iLd 287 (468)
T 3shw_A 269 ---------IRLHTIKQIIDQDKHALLD 287 (468)
T ss_dssp ---------CCHHHHHHHHTTTCEEEEC
T ss_pred ---------ccHHHHHHHHHCCCeEEEE
Confidence 2568899999999999993
No 92
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.91 E-value=7.2e-06 Score=65.92 Aligned_cols=28 Identities=18% Similarity=0.133 Sum_probs=25.8
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFSG 159 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~ 159 (251)
++++|+|.|++||||||+|+.|+++++.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 4579999999999999999999999876
No 93
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.88 E-value=7.4e-06 Score=68.78 Aligned_cols=33 Identities=21% Similarity=0.289 Sum_probs=30.5
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
.|+|.||+||||||+|+.|+++++..+++.|.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~ 34 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIESGGI 34 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEchHHH
Confidence 689999999999999999999999999998764
No 94
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.87 E-value=9.4e-06 Score=69.14 Aligned_cols=32 Identities=19% Similarity=0.242 Sum_probs=29.4
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNK 166 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds 166 (251)
+|+|.||+||||+|.|..|+++++...||...
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~istGd 33 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTGD 33 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcHHH
Confidence 68899999999999999999999999998743
No 95
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=97.86 E-value=7.5e-06 Score=67.72 Aligned_cols=39 Identities=28% Similarity=0.389 Sum_probs=33.1
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC-----CceEecCCcc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS-----GEAINSNKIQ 168 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds~Q 168 (251)
..++.+++|+||+|||||||++.|+..++ ...|+.|.+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~ 62 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFH 62 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGB
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCc
Confidence 46678999999999999999999999875 4678888763
No 96
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.86 E-value=6.3e-06 Score=67.65 Aligned_cols=35 Identities=17% Similarity=0.251 Sum_probs=32.6
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
+.+|+|+|++||||||+++.|++.++..++..|.+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~ 37 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTGAM 37 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecCChH
Confidence 46899999999999999999999999999999876
No 97
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=97.84 E-value=1.4e-05 Score=67.77 Aligned_cols=42 Identities=21% Similarity=0.317 Sum_probs=33.3
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcCCc----------eEecCCcceeccc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGE----------AINSNKIQVYKGL 173 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~----------VIS~Ds~QvYk~l 173 (251)
.+++.+|.|.||+|||||||++.|+..++.. ++..|. +|+.+
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~--~~~~l 73 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDR--FYKVL 73 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGG--GBCCC
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCc--Ccccc
Confidence 3567899999999999999999999988744 577774 45544
No 98
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.84 E-value=9e-06 Score=68.50 Aligned_cols=37 Identities=16% Similarity=0.266 Sum_probs=34.1
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
+++.+|+|+|++||||||+++.|+++++..+++.|.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~ 50 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAM 50 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCe
Confidence 5567899999999999999999999999999999876
No 99
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.82 E-value=1.3e-05 Score=64.04 Aligned_cols=28 Identities=18% Similarity=0.418 Sum_probs=25.5
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcCCceE
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFSGEAI 162 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~~~VI 162 (251)
.|+|.|++||||||+++.|+++++..++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 6899999999999999999999987554
No 100
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.82 E-value=6.7e-05 Score=60.27 Aligned_cols=83 Identities=12% Similarity=0.150 Sum_probs=49.5
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhc---CCceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHHHH
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHF---SGEAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEEFC 208 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l---~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~F~ 208 (251)
++..++|.||+|+|||+|++.++..+ +..++-.+.- ++... +-....+--++|....-. ... .
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~------~~~~~----~~~~~~~lLilDE~~~~~---~~~-~ 100 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAA------SMPLT----DAAFEAEYLAVDQVEKLG---NEE-Q 100 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETT------TSCCC----GGGGGCSEEEEESTTCCC---SHH-H
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHH------HhhHH----HHHhCCCEEEEeCccccC---hHH-H
Confidence 56789999999999999999999876 3222222111 11100 112334566788765422 122 4
Q ss_pred HHHHHHHHHHHHcCCc-EEEE
Q 045245 209 EHALRAIDKIIENGHL-HIIV 228 (251)
Q Consensus 209 e~A~k~I~eI~~~Gk~-PILV 228 (251)
+...+.++...++|+. .|+.
T Consensus 101 ~~l~~li~~~~~~g~~~iiit 121 (149)
T 2kjq_A 101 ALLFSIFNRFRNSGKGFLLLG 121 (149)
T ss_dssp HHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHHHHHHcCCcEEEEE
Confidence 4556667777777776 4553
No 101
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.81 E-value=1.6e-05 Score=63.57 Aligned_cols=36 Identities=19% Similarity=0.254 Sum_probs=30.1
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc---CCceEecCC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF---SGEAINSNK 166 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l---~~~VIS~Ds 166 (251)
.++..|+|+|++||||||+++.|++.+ +.+++..|.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 456789999999999999999999987 767776654
No 102
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.81 E-value=1.4e-05 Score=63.78 Aligned_cols=30 Identities=20% Similarity=0.169 Sum_probs=26.1
Q ss_pred EEEEEcCCccCHHHHHHHHHHhc---CCceEec
Q 045245 135 VVFVMGATATGKTKLSIDLAIHF---SGEAINS 164 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l---~~~VIS~ 164 (251)
.|+|.|++||||||+++.|++.+ +..++..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 68999999999999999999998 7777754
No 103
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=97.80 E-value=3e-05 Score=66.97 Aligned_cols=35 Identities=9% Similarity=0.114 Sum_probs=31.8
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
+.+|+|+|++||||||+|+.||++++.+++..|-+
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~~~~ 48 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGIHFYDDDIL 48 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTCEEECHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEcHHHH
Confidence 57999999999999999999999999999887654
No 104
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.80 E-value=9.6e-06 Score=71.22 Aligned_cols=35 Identities=14% Similarity=0.322 Sum_probs=32.5
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
+..|+|+|++||||||+++.|++.++...+..|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~ 82 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTL 82 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHH
Confidence 67899999999999999999999999999988765
No 105
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.79 E-value=1.2e-05 Score=64.82 Aligned_cols=35 Identities=26% Similarity=0.413 Sum_probs=29.0
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcCC-ceEecCCc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFSG-EAINSNKI 167 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~-~VIS~Ds~ 167 (251)
+.+++|+||+||||||+++.|++..+. ..++.|.+
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~ 37 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDII 37 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccCCeEEEcccch
Confidence 368999999999999999999987776 56666654
No 106
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.74 E-value=9.4e-05 Score=59.79 Aligned_cols=91 Identities=14% Similarity=0.076 Sum_probs=49.2
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcC---C--ceEecCCcceecccccccCCCCccccCCCCeEEeccCCCCCccCHHH
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFS---G--EAINSNKIQVYKGLDIATNKVTASERQGVPHHLLGFVDPEADYPEEE 206 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~---~--~VIS~Ds~QvYk~lsIgTakP~~eEr~gvpHhLVD~~d~~e~fsag~ 206 (251)
.+..++|.||+|+|||++|+.+++.+. . ..++++.+ ...+.- .........-.++|..+.-. ....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~vliiDe~~~~~--~~~~ 121 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH--ASISTA-----LLEGLEQFDLICIDDVDAVA--GHPL 121 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG--GGSCGG-----GGTTGGGSSEEEEETGGGGT--TCHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH--HHHHHH-----HHHhccCCCEEEEecccccc--CCHH
Confidence 567899999999999999999998764 2 23333222 111100 00111223446677654221 1122
Q ss_pred HHHHHHHHHHHHHHcCCcEEEEccc
Q 045245 207 FCEHALRAIDKIIENGHLHIIVGGS 231 (251)
Q Consensus 207 F~e~A~k~I~eI~~~Gk~PILVGGT 231 (251)
+.+.....++...+.+...+|+.++
T Consensus 122 ~~~~l~~~l~~~~~~~~~~ii~~~~ 146 (242)
T 3bos_A 122 WEEAIFDLYNRVAEQKRGSLIVSAS 146 (242)
T ss_dssp HHHHHHHHHHHHHHHCSCEEEEEES
T ss_pred HHHHHHHHHHHHHHcCCCeEEEEcC
Confidence 3344455666666666663554433
No 107
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.69 E-value=2.6e-05 Score=68.61 Aligned_cols=36 Identities=11% Similarity=0.043 Sum_probs=30.9
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSN 165 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D 165 (251)
.+.++.++|.||||+|||++|+.+|++++..++..+
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~ 68 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMS 68 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 455678999999999999999999999998766654
No 108
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.67 E-value=2.2e-05 Score=63.18 Aligned_cols=29 Identities=31% Similarity=0.453 Sum_probs=25.9
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++.+|+|.|++||||||+++.|++.++
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~ 38 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQ 38 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35678999999999999999999999875
No 109
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.66 E-value=3.3e-05 Score=68.52 Aligned_cols=38 Identities=21% Similarity=0.249 Sum_probs=32.1
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcC-------CceEecCCcc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFS-------GEAINSNKIQ 168 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~-------~~VIS~Ds~Q 168 (251)
.++.+|+|+||+|||||||++.|+..++ ..++++|.+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence 5668999999999999999999998765 4577888763
No 110
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=97.64 E-value=1.8e-05 Score=67.67 Aligned_cols=30 Identities=23% Similarity=0.145 Sum_probs=25.4
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
|..+++.|+|.|++||||||+++.|++.+.
T Consensus 2 ~~m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 2 NAMTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 446678999999999999999999999885
No 111
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.64 E-value=3.5e-05 Score=68.79 Aligned_cols=39 Identities=18% Similarity=0.231 Sum_probs=32.4
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC-------CceE-ecCCcc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS-------GEAI-NSNKIQ 168 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~-------~~VI-S~Ds~Q 168 (251)
..++.+|+|+||+|||||||++.|++.++ ..++ +.|.+.
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~ 74 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY 74 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence 45678999999999999999999998774 3445 999973
No 112
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.60 E-value=2.7e-05 Score=64.35 Aligned_cols=30 Identities=20% Similarity=0.472 Sum_probs=26.8
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
...++.+|+|.|++||||||+++.|++.++
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 446678999999999999999999999876
No 113
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=97.60 E-value=6.6e-05 Score=57.81 Aligned_cols=27 Identities=26% Similarity=0.362 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..+..++|.||+|+|||++|+.+++.+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999999986
No 114
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.60 E-value=5.2e-05 Score=63.13 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=29.5
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSN 165 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D 165 (251)
..++.++|.||+|+|||++|+.++++++..++..+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~ 71 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMA 71 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEec
Confidence 44567999999999999999999999987666543
No 115
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=97.60 E-value=5.5e-05 Score=58.63 Aligned_cols=27 Identities=30% Similarity=0.445 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..+..++|.||+|+|||++|+.+++.+
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999999987
No 116
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.57 E-value=5.1e-05 Score=69.32 Aligned_cols=39 Identities=23% Similarity=0.216 Sum_probs=32.7
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC-------CceEecCCcc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS-------GEAINSNKIQ 168 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~-------~~VIS~Ds~Q 168 (251)
..++.+|.|+||+||||||+++.|+..+. ..+++.|.+.
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~ 134 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL 134 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence 45667999999999999999999988764 4578999874
No 117
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.56 E-value=2.4e-05 Score=68.38 Aligned_cols=32 Identities=16% Similarity=0.179 Sum_probs=25.4
Q ss_pred hccCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 127 TMNFNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 127 ~~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.+|..+++.|+|.|++||||||+++.|++.+.
T Consensus 21 ~~~~~~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 21 QSNAMNAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp -----CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred ccCCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34556788999999999999999999999885
No 118
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.56 E-value=6.8e-05 Score=63.27 Aligned_cols=34 Identities=26% Similarity=0.228 Sum_probs=29.0
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNK 166 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds 166 (251)
++-++|.||+|+|||++|+.++..++..++..|.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~ 78 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISG 78 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECS
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeH
Confidence 4569999999999999999999999877666554
No 119
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.54 E-value=7.9e-05 Score=63.30 Aligned_cols=36 Identities=25% Similarity=0.279 Sum_probs=30.5
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNK 166 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds 166 (251)
..++-++|.||+|+|||++|+.+++.++..++..+.
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~ 84 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVG 84 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEG
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEeh
Confidence 456779999999999999999999999987665543
No 120
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.53 E-value=8.6e-05 Score=61.15 Aligned_cols=39 Identities=18% Similarity=0.204 Sum_probs=30.7
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhc---CCc--eEecCCc
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHF---SGE--AINSNKI 167 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l---~~~--VIS~Ds~ 167 (251)
+..++.+++|+||+||||||+++.|+..+ +.. +++.|.+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~ 61 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH 61 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcc
Confidence 45677899999999999999999999865 443 3455654
No 121
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.52 E-value=2.5e-05 Score=67.93 Aligned_cols=91 Identities=16% Similarity=0.128 Sum_probs=48.0
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccc-cccCCCCccccCC-CCeEEecc-CCCCCc--cCHH
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLD-IATNKVTASERQG-VPHHLLGF-VDPEAD--YPEE 205 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~ls-IgTakP~~eEr~g-vpHhLVD~-~d~~e~--fsag 205 (251)
.+++.|+|.||+||||||+++.|++.++...++. +.+ +.|+.|+..+... +...+.+. .++... +=++
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~-------g~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~llf~a 95 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPA-------GRHVVVTREPGGTRLGETLREILLNQPMDLETEALLMFA 95 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGG-------TCCEEEEESSSSSHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhhcccc-------ceeeeeecCCCCChHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4678999999999999999999999885321111 011 1345554322210 11112221 111110 1133
Q ss_pred HHHHHHHHHHHHHHHcCCcEEEE
Q 045245 206 EFCEHALRAIDKIIENGHLHIIV 228 (251)
Q Consensus 206 ~F~e~A~k~I~eI~~~Gk~PILV 228 (251)
+.+++..+.|...+++|+.+|..
T Consensus 96 ~R~~~~~~~i~p~l~~g~~VI~D 118 (227)
T 3v9p_A 96 GRREHLALVIEPALARGDWVVSD 118 (227)
T ss_dssp HHHHHHHHTHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCEEEEe
Confidence 44445556678888889887774
No 122
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=97.50 E-value=8.5e-05 Score=63.31 Aligned_cols=35 Identities=23% Similarity=0.169 Sum_probs=30.2
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEec
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINS 164 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~ 164 (251)
...+..++|.||+|+|||++|+.+++..+..++..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i 95 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI 95 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE
Confidence 45667899999999999999999999998776554
No 123
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.47 E-value=0.00011 Score=64.45 Aligned_cols=37 Identities=24% Similarity=0.279 Sum_probs=31.8
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNK 166 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds 166 (251)
...++.++|.||+|+|||++|+.+++..+...+..+.
T Consensus 46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~ 82 (301)
T 3cf0_A 46 MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKG 82 (301)
T ss_dssp CCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECH
T ss_pred CCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEh
Confidence 3566789999999999999999999999887776653
No 124
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.45 E-value=9.9e-05 Score=63.21 Aligned_cols=33 Identities=27% Similarity=0.355 Sum_probs=28.8
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcCCceEec
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINS 164 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~ 164 (251)
.++.++|.||+|+|||++|+.+++.++...+..
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i 85 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSATFLNI 85 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence 457899999999999999999999998766554
No 125
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=97.44 E-value=6.5e-05 Score=60.09 Aligned_cols=27 Identities=22% Similarity=0.334 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
+++..++|.||+|+|||||++.++..+
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 446899999999999999999998876
No 126
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.44 E-value=4e-05 Score=62.13 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=23.2
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
++|+|.|++||||||+++.|++.++
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999999885
No 127
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.43 E-value=8.9e-05 Score=62.88 Aligned_cols=34 Identities=26% Similarity=0.371 Sum_probs=28.8
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSN 165 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D 165 (251)
.+..++|.||+|+|||++|+.+++.++..++..|
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~ 82 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEc
Confidence 4567899999999999999999999987665544
No 128
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=97.41 E-value=5e-05 Score=64.90 Aligned_cols=36 Identities=19% Similarity=0.131 Sum_probs=27.8
Q ss_pred ccCCCCeEEEEEcCCccCHHHHHHHHHHhcC-CceEe
Q 045245 128 MNFNKKKVVFVMGATATGKTKLSIDLAIHFS-GEAIN 163 (251)
Q Consensus 128 ~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~-~~VIS 163 (251)
+...+++.|+|.|+.||||||+++.|++.++ ..++.
T Consensus 19 ~~~~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i~ 55 (263)
T 1p5z_B 19 SEGTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVP 55 (263)
T ss_dssp ----CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEEC
T ss_pred ccccCceEEEEECCCCCCHHHHHHHHHHhcCCCEEEe
Confidence 3446678999999999999999999999994 44553
No 129
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.38 E-value=0.00012 Score=63.88 Aligned_cols=97 Identities=19% Similarity=0.104 Sum_probs=51.1
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhc---CCceEecCCcceecccccccCCCCcc----ccCCCCeEEeccCCCCCccCH
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHF---SGEAINSNKIQVYKGLDIATNKVTAS----ERQGVPHHLLGFVDPEADYPE 204 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l---~~~VIS~Ds~QvYk~lsIgTakP~~e----Er~gvpHhLVD~~d~~e~fsa 204 (251)
.+..++|.||+|+|||++|+.+++.+ +..++..+.-.....+.-.......+ ......--++|..+.-.. .
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~--~ 113 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSG--K 113 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTT--C
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccC--C
Confidence 45789999999999999999999977 55544333221111110000000000 011245677886653221 1
Q ss_pred HHHHHHHHHHHHHHHHcCCcEEEEccc
Q 045245 205 EEFCEHALRAIDKIIENGHLHIIVGGS 231 (251)
Q Consensus 205 g~F~e~A~k~I~eI~~~Gk~PILVGGT 231 (251)
....+.....++...+.++. ||++++
T Consensus 114 ~~~~~~l~~~l~~~~~~~~~-iii~~~ 139 (324)
T 1l8q_A 114 ERTQIEFFHIFNTLYLLEKQ-IILASD 139 (324)
T ss_dssp HHHHHHHHHHHHHHHHTTCE-EEEEES
T ss_pred hHHHHHHHHHHHHHHHCCCe-EEEEec
Confidence 12333445556666665554 555555
No 130
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=97.38 E-value=0.00011 Score=65.54 Aligned_cols=35 Identities=26% Similarity=0.306 Sum_probs=30.2
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNK 166 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds 166 (251)
.+..++|.||||+|||++|+.||+.++.+++..|.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~ 84 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTMADA 84 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEech
Confidence 45678999999999999999999999887776654
No 131
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.38 E-value=6.8e-05 Score=60.55 Aligned_cols=34 Identities=21% Similarity=0.342 Sum_probs=26.2
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNK 166 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds 166 (251)
+++.+++|.||+|||||||++.+.. +..+++.|.
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~~~~--~~~~~~~d~ 40 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKKHFK--PTEVISSDF 40 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHHHSC--GGGEEEHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHcc--CCeEEccHH
Confidence 5678999999999999999997542 234555554
No 132
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=97.33 E-value=0.00022 Score=61.02 Aligned_cols=27 Identities=22% Similarity=0.285 Sum_probs=24.0
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..+..++|.||+|+|||++|+.+++.+
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 445679999999999999999999987
No 133
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=97.31 E-value=0.00012 Score=64.32 Aligned_cols=36 Identities=17% Similarity=0.267 Sum_probs=31.3
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
-...+.|.||+||||||+|+.|+++++...|++|.+
T Consensus 7 ~~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdl 42 (230)
T 3gmt_A 7 HHMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDM 42 (230)
T ss_dssp --CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHH
T ss_pred cccceeeECCCCCCHHHHHHHHHHHhCCCeeechHH
Confidence 345789999999999999999999999999998653
No 134
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.31 E-value=0.00016 Score=61.67 Aligned_cols=28 Identities=14% Similarity=0.207 Sum_probs=26.1
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.+++.|+|.||+||||||+++.|++.++
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 5678999999999999999999999986
No 135
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=97.30 E-value=0.00021 Score=63.04 Aligned_cols=35 Identities=17% Similarity=0.269 Sum_probs=30.1
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSN 165 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D 165 (251)
..++-++|.||+|+|||++|+.+|++.+..++..+
T Consensus 49 ~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~ 83 (322)
T 3eie_A 49 KPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVS 83 (322)
T ss_dssp CCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEc
Confidence 34577999999999999999999999998776654
No 136
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.28 E-value=0.00017 Score=64.52 Aligned_cols=36 Identities=28% Similarity=0.381 Sum_probs=30.0
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
.+..++|.||||+|||++|+.|++.++..++..|..
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~ 106 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDAT 106 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGG
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecch
Confidence 345689999999999999999999998777665543
No 137
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.26 E-value=0.00016 Score=65.07 Aligned_cols=38 Identities=16% Similarity=0.174 Sum_probs=31.4
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC-------CceEecCCc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS-------GEAINSNKI 167 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~-------~~VIS~Ds~ 167 (251)
..++.+++|+||+|||||||++.|+..+. ..+++.|.+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~ 131 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF 131 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence 46788999999999999999999988653 346777765
No 138
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.24 E-value=0.00061 Score=67.10 Aligned_cols=108 Identities=19% Similarity=0.255 Sum_probs=58.9
Q ss_pred EEEEEcCCccCHHHHHHHHHHhc---CCceEecCCcceecccccccCCCCccccCCCC--eEEeccCCCCCccCHHHHHH
Q 045245 135 VVFVMGATATGKTKLSIDLAIHF---SGEAINSNKIQVYKGLDIATNKVTASERQGVP--HHLLGFVDPEADYPEEEFCE 209 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l---~~~VIS~Ds~QvYk~lsIgTakP~~eEr~gvp--HhLVD~~d~~e~fsag~F~e 209 (251)
.+++.||||+|||++|+.|++.+ +..++..|.-. |.+....+...-.+.....+ -.|+|..+--. .
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~-~~~~~~~~~~~l~~~~~~~~~~vl~lDEi~~~~--------~ 593 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSE-YMEKHSTSGGQLTEKVRRKPYSVVLLDAIEKAH--------P 593 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGG-GCSSCCCC---CHHHHHHCSSSEEEEECGGGSC--------H
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechh-cccccccccchhhHHHHhCCCeEEEEeCccccC--------H
Confidence 69999999999999999999987 34455444322 22211111111111111112 36777664221 2
Q ss_pred HHHHHHHHHHHcCC------------cEEEEcccH-------HHHHHHHcCCchhhhcccC
Q 045245 210 HALRAIDKIIENGH------------LHIIVGGSN-------TYIEALVEDSIINFRANYD 251 (251)
Q Consensus 210 ~A~k~I~eI~~~Gk------------~PILVGGTg-------lYlkaLl~g~~~~~~~~~~ 251 (251)
.+...+.++++.|. ..+|+..|+ ...+.+...+.|+|+-|+|
T Consensus 594 ~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~ 654 (758)
T 3pxi_A 594 DVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRID 654 (758)
T ss_dssp HHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSS
T ss_pred HHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCC
Confidence 34455555555543 224443333 5666677778888887763
No 139
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=97.24 E-value=8.2e-05 Score=62.80 Aligned_cols=33 Identities=27% Similarity=0.238 Sum_probs=27.5
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSN 165 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D 165 (251)
++-++|.||+|+|||++|+.++++.+..++..+
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~ 76 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMG 76 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCC
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEEec
Confidence 445889999999999999999999886655543
No 140
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.23 E-value=0.00029 Score=59.28 Aligned_cols=31 Identities=26% Similarity=0.284 Sum_probs=26.4
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFSGEAINSN 165 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D 165 (251)
-++|.||+|+|||||++.++...+...+..+
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~ 81 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEARVPFITAS 81 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEee
Confidence 3999999999999999999999876655544
No 141
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=97.23 E-value=0.00027 Score=59.44 Aligned_cols=28 Identities=18% Similarity=0.245 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFSG 159 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~ 159 (251)
+++.|+|.|+.||||||+++.|++.++.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~~ 28 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 3578999999999999999999999953
No 142
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.22 E-value=0.00022 Score=62.13 Aligned_cols=34 Identities=18% Similarity=0.235 Sum_probs=28.5
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEec
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINS 164 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~ 164 (251)
.....++|.||+|+|||++|+.+++.++..++..
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~ 86 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANIISYEMSANIKTT 86 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence 4455789999999999999999999998765544
No 143
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.21 E-value=0.00021 Score=56.58 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=23.5
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
+..++|.||+|+|||++++.+++.++
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45899999999999999999998874
No 144
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=97.21 E-value=0.00021 Score=62.91 Aligned_cols=38 Identities=21% Similarity=0.310 Sum_probs=32.4
Q ss_pred ccCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245 128 MNFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSN 165 (251)
Q Consensus 128 ~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D 165 (251)
+..|+++-++|.||+|+|||++|..|++.+...+++.+
T Consensus 53 ~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fa 90 (212)
T 1tue_A 53 KGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFV 90 (212)
T ss_dssp HTCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCC
T ss_pred hcCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEE
Confidence 34577778999999999999999999999988777654
No 145
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.20 E-value=0.00027 Score=67.12 Aligned_cols=39 Identities=26% Similarity=0.273 Sum_probs=33.3
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
..+.++=+++.||+|+|||.+|+++|.+++..++..+.-
T Consensus 202 g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~ 240 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGS 240 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGG
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecc
Confidence 445677899999999999999999999999887776543
No 146
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.20 E-value=0.00028 Score=67.14 Aligned_cols=38 Identities=21% Similarity=0.226 Sum_probs=33.1
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNK 166 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds 166 (251)
..+.++=|++.||+|+|||.+|+++|.+.+..+++.+.
T Consensus 211 g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~ 248 (434)
T 4b4t_M 211 GIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAA 248 (434)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred CCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEeh
Confidence 45667889999999999999999999999988777654
No 147
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.20 E-value=0.00032 Score=66.40 Aligned_cols=36 Identities=17% Similarity=0.211 Sum_probs=31.2
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
.++.++|+||+|+|||++|+.++++++..++..+.-
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s 111 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNAS 111 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 457899999999999999999999999887776543
No 148
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.17 E-value=0.0003 Score=61.59 Aligned_cols=31 Identities=26% Similarity=0.255 Sum_probs=26.8
Q ss_pred EEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245 136 VFVMGATATGKTKLSIDLAIHFSGEAINSNK 166 (251)
Q Consensus 136 IvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds 166 (251)
++|.||+|+|||||++.||...+...+..+.
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~~~i~i~g 77 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGLNFISVKG 77 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTCEEEEEET
T ss_pred EEEECCCCCcHHHHHHHHHHHcCCCEEEEEc
Confidence 9999999999999999999998876655443
No 149
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.16 E-value=0.00025 Score=57.39 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=22.5
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhc
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
+.++|.||+|+|||+||+.++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 789999999999999999999876
No 150
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.16 E-value=0.00022 Score=58.61 Aligned_cols=24 Identities=29% Similarity=0.491 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHH
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLA 154 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LA 154 (251)
+++.+++|.||+|||||||++.|+
T Consensus 28 ~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 28 PEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHH
Confidence 677899999999999999999888
No 151
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.15 E-value=0.00034 Score=62.33 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=28.0
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc-CCceEec
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF-SGEAINS 164 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l-~~~VIS~ 164 (251)
..++-++|.||+|+|||++|+.+|++. +..++..
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i 77 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSI 77 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEE
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEE
Confidence 345789999999999999999999998 5555443
No 152
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=97.15 E-value=0.00034 Score=62.93 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=29.9
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSN 165 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D 165 (251)
..++.++|.||+|+|||++|+.+|+..+..++..+
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~ 149 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSIS 149 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEe
Confidence 45678999999999999999999999987766543
No 153
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=97.14 E-value=0.00027 Score=60.01 Aligned_cols=28 Identities=18% Similarity=0.319 Sum_probs=23.8
Q ss_pred EEEEcCCccCHHHHHHHHHHhcCCceEec
Q 045245 136 VFVMGATATGKTKLSIDLAIHFSGEAINS 164 (251)
Q Consensus 136 IvIsGpTGSGKTTLA~~LAk~l~~~VIS~ 164 (251)
++|.|++|||||++|.+|+++ +.+++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yi 29 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYI 29 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEE
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEE
Confidence 789999999999999999988 6555543
No 154
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.13 E-value=0.00032 Score=66.81 Aligned_cols=38 Identities=29% Similarity=0.319 Sum_probs=32.6
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNK 166 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds 166 (251)
..+.++=|++.||+|+|||.+|+++|.+.+..++..+.
T Consensus 211 g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~ 248 (437)
T 4b4t_L 211 GIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPA 248 (437)
T ss_dssp CCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEeh
Confidence 45667889999999999999999999999988776543
No 155
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.13 E-value=0.00026 Score=57.48 Aligned_cols=27 Identities=30% Similarity=0.477 Sum_probs=24.2
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
.+++.+++|.||+|||||||++.|+..
T Consensus 22 i~~G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 22 IETQAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 367789999999999999999999874
No 156
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.11 E-value=0.00042 Score=64.44 Aligned_cols=39 Identities=23% Similarity=0.273 Sum_probs=31.2
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcC--CceEecCCcce
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFS--GEAINSNKIQV 169 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~--~~VIS~Ds~Qv 169 (251)
..++-+++.||||+|||++|+.+|+.++ ...+..+.-.+
T Consensus 61 ~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~ 101 (456)
T 2c9o_A 61 MAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEV 101 (456)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGG
T ss_pred CCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHH
Confidence 3456799999999999999999999998 66666554433
No 157
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.10 E-value=0.00029 Score=55.42 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=21.4
Q ss_pred EEEEEcCCccCHHHHHHHHHHhc
Q 045245 135 VVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.++|.||+|+|||++|+.+++.+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 49999999999999999999875
No 158
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.09 E-value=0.00044 Score=62.51 Aligned_cols=35 Identities=20% Similarity=0.294 Sum_probs=30.7
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNK 166 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds 166 (251)
.++-++|.||+|+|||++|+.++++++..++..+.
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~ 181 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAESNATFFNISA 181 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeH
Confidence 45789999999999999999999999988776654
No 159
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.09 E-value=0.00036 Score=59.63 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=22.8
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++|.||+|+|||++|+.+++.+.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~ 72 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLF 72 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHc
Confidence 4799999999999999999999873
No 160
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=97.09 E-value=0.00028 Score=67.86 Aligned_cols=37 Identities=27% Similarity=0.382 Sum_probs=31.0
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcC-----CceEecCCc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFS-----GEAINSNKI 167 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds~ 167 (251)
.++.+|+++|++||||||+|++|++.++ ..+++.|.+
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~ 74 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEY 74 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHH
Confidence 4567999999999999999999999884 346788864
No 161
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=97.09 E-value=0.0004 Score=62.71 Aligned_cols=35 Identities=17% Similarity=0.269 Sum_probs=29.5
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSN 165 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D 165 (251)
..++-++|.||+|+|||++|+.+|+.++..++..+
T Consensus 82 ~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~ 116 (355)
T 2qp9_X 82 KPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVS 116 (355)
T ss_dssp CCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEE
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEee
Confidence 33456899999999999999999999998776654
No 162
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.09 E-value=0.00039 Score=60.97 Aligned_cols=30 Identities=23% Similarity=0.381 Sum_probs=26.2
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFSG 159 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~ 159 (251)
...++.++|.||+|+|||++|+.+++.++.
T Consensus 67 ~~~~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 67 KIAGRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp CCTTCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 344578999999999999999999999874
No 163
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.08 E-value=0.00049 Score=59.07 Aligned_cols=31 Identities=26% Similarity=0.284 Sum_probs=26.4
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFSGEAINSN 165 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D 165 (251)
-++|.||+|+|||||++.|+...+...+..+
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~ 105 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEARVPFITAS 105 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEECCCcChHHHHHHHHHHHcCCCEEEec
Confidence 3999999999999999999999876655544
No 164
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.08 E-value=0.00031 Score=55.06 Aligned_cols=27 Identities=22% Similarity=0.205 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.....|+|.||+|+|||++|+.+++..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 344568999999999999999999865
No 165
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.07 E-value=0.0003 Score=59.15 Aligned_cols=27 Identities=19% Similarity=0.159 Sum_probs=24.5
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
..++..|+|.||+||||||+++.|+..
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 366789999999999999999999887
No 166
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=97.07 E-value=0.00048 Score=68.57 Aligned_cols=36 Identities=19% Similarity=0.245 Sum_probs=31.7
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc---CCceEecCC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF---SGEAINSNK 166 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l---~~~VIS~Ds 166 (251)
.++.+|+|+|++||||||+|+.|++++ +...+..|.
T Consensus 50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDg 88 (630)
T 1x6v_B 50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 88 (630)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEech
Confidence 367899999999999999999999998 777777764
No 167
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=97.05 E-value=0.00029 Score=61.02 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..+..++|+||+|+|||++++.+++.+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 456789999999999999999999887
No 168
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.05 E-value=0.00045 Score=64.27 Aligned_cols=36 Identities=33% Similarity=0.448 Sum_probs=31.9
Q ss_pred ccCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEe
Q 045245 128 MNFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAIN 163 (251)
Q Consensus 128 ~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS 163 (251)
...+++..++|.||+|+|||||++.|+..+++.++.
T Consensus 164 ~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 164 YNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp HCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred cccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 456788899999999999999999999998887765
No 169
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.05 E-value=0.00048 Score=60.30 Aligned_cols=27 Identities=30% Similarity=0.235 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..+..++|+||+|+|||++|+.+++.+
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 445689999999999999999999876
No 170
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=97.04 E-value=0.00044 Score=59.85 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=31.8
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
-...|.|+|..||||||+++.|++ +|.++|.+|.+
T Consensus 8 ~~~~iglTGgigsGKStv~~~l~~-~g~~vidaD~i 42 (210)
T 4i1u_A 8 HMYAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLI 42 (210)
T ss_dssp SCCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHH
Confidence 346799999999999999999988 99999999985
No 171
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.04 E-value=0.0004 Score=65.85 Aligned_cols=38 Identities=29% Similarity=0.324 Sum_probs=32.8
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNK 166 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds 166 (251)
..+.++=+++.||+|+|||.+|+++|.+.+..+++.+.
T Consensus 178 gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~ 215 (405)
T 4b4t_J 178 GIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSG 215 (405)
T ss_dssp TCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred CCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEh
Confidence 45566789999999999999999999999988777654
No 172
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.04 E-value=0.0004 Score=59.96 Aligned_cols=35 Identities=26% Similarity=0.311 Sum_probs=28.3
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc------CCceEecC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF------SGEAINSN 165 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l------~~~VIS~D 165 (251)
..+..++|.||+|+|||+|++.+++.+ +..++..+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 456789999999999999999999977 55555443
No 173
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.03 E-value=0.00038 Score=56.12 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
+++.+++|.||+|+|||||++.++...
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999998543
No 174
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.02 E-value=0.00042 Score=61.70 Aligned_cols=30 Identities=23% Similarity=0.267 Sum_probs=25.9
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcCCce
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEA 161 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~V 161 (251)
.+..++|.||+|+||||||+.++..++..+
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~ 79 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASELQTNI 79 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 346789999999999999999999987643
No 175
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.02 E-value=0.00042 Score=60.68 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=24.8
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..++.+++|+|||||||||+.+.|+..+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhC
Confidence 4677899999999999999999998754
No 176
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=97.01 E-value=0.00044 Score=60.03 Aligned_cols=37 Identities=24% Similarity=0.073 Sum_probs=26.9
Q ss_pred hhhhhccCCCCeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245 123 TRVITMNFNKKKVVFVMGATATGKTKLSIDLAIHFSG 159 (251)
Q Consensus 123 ~~~~~~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~ 159 (251)
|....++..+++.|+|.|++||||||+++.|++.++.
T Consensus 11 ~~~~~~~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 11 TLEAQTQGPGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp --------CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cccccccCCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 3334566678899999999999999999999998754
No 177
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.00 E-value=0.00035 Score=60.07 Aligned_cols=31 Identities=19% Similarity=0.239 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcCCceE
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAI 162 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VI 162 (251)
.+..++|.||+|+|||++|+.+++.++..++
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~~~ 67 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLR 67 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 4467999999999999999999999886544
No 178
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.99 E-value=0.00045 Score=55.78 Aligned_cols=29 Identities=28% Similarity=0.386 Sum_probs=25.0
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.+++.+++|.||+|+|||||+..++...+
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~ 45 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGLLSG 45 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46778999999999999999999987434
No 179
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.99 E-value=0.00042 Score=57.24 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=22.8
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcCC
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFSG 159 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~~ 159 (251)
.++|.||+|||||||++.|+..++.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i 26 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGK 26 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6889999999999999999998863
No 180
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=96.96 E-value=0.00063 Score=61.79 Aligned_cols=38 Identities=24% Similarity=0.353 Sum_probs=32.5
Q ss_pred hhccCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEe
Q 045245 126 ITMNFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAIN 163 (251)
Q Consensus 126 ~~~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS 163 (251)
++-..+++..++|+||+|||||||++.|+.-+.+.|+.
T Consensus 119 vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I~~ 156 (305)
T 2v9p_A 119 WLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVLS 156 (305)
T ss_dssp HHHTCTTCSEEEEECSSSSSHHHHHHHHHHHHTCEEEC
T ss_pred ceEEecCCCEEEEECCCCCcHHHHHHHHhhhcCceEEE
Confidence 34566888999999999999999999999988766654
No 181
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.94 E-value=0.00055 Score=59.44 Aligned_cols=35 Identities=17% Similarity=0.263 Sum_probs=29.5
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSN 165 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D 165 (251)
..+..+++.||+|+|||++|+.+++.++..++..+
T Consensus 46 ~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~ 80 (324)
T 3u61_B 46 KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVN 80 (324)
T ss_dssp CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEE
T ss_pred CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEc
Confidence 44578899999999999999999999987766554
No 182
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.93 E-value=0.00073 Score=64.88 Aligned_cols=39 Identities=28% Similarity=0.248 Sum_probs=33.5
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
..+.++=|++.||+|+|||.+|+++|.+.+..+++.+.-
T Consensus 212 Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s 250 (437)
T 4b4t_I 212 GIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGS 250 (437)
T ss_dssp TCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESG
T ss_pred CCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHH
Confidence 445678899999999999999999999999887776543
No 183
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.92 E-value=0.00062 Score=65.86 Aligned_cols=38 Identities=21% Similarity=0.211 Sum_probs=33.2
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNK 166 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds 166 (251)
..+.++=|++.||+|+|||.+|+++|.+.+..+++.+.
T Consensus 239 Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~ 276 (467)
T 4b4t_H 239 GIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIG 276 (467)
T ss_dssp TCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred CCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEh
Confidence 45677889999999999999999999999988777654
No 184
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.91 E-value=0.00023 Score=55.86 Aligned_cols=32 Identities=9% Similarity=0.092 Sum_probs=25.9
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSN 165 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D 165 (251)
+..|+|.||+|+|||++|+.+++..+ .++..|
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~ 58 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKNGT-PWVSPA 58 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCTTS-CEECCS
T ss_pred CCcEEEECCCCccHHHHHHHHHHhCC-CeEEec
Confidence 45689999999999999999998776 554443
No 185
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.91 E-value=0.00068 Score=59.08 Aligned_cols=24 Identities=25% Similarity=0.213 Sum_probs=22.6
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhc
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
+.++|+||+|+|||++++.+++.+
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999999999987
No 186
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.90 E-value=0.00077 Score=62.89 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=23.4
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
+..++|.||+|+|||+||+.++..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999999876
No 187
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=96.90 E-value=0.00078 Score=55.01 Aligned_cols=30 Identities=23% Similarity=0.354 Sum_probs=26.5
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..+++.+++|.||+|+|||||.+.|+..++
T Consensus 29 ~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l~ 58 (158)
T 1htw_A 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHhCC
Confidence 347778999999999999999999999874
No 188
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.88 E-value=0.00064 Score=56.58 Aligned_cols=26 Identities=23% Similarity=0.162 Sum_probs=23.1
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
+.++++|+|++|||||||+..|.+.+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 35789999999999999999998764
No 189
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.87 E-value=0.00062 Score=57.05 Aligned_cols=26 Identities=27% Similarity=0.203 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
+.+++.|+|++||||||++.+|++.+
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhh
Confidence 35789999999999999999998865
No 190
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.87 E-value=0.00062 Score=65.05 Aligned_cols=34 Identities=26% Similarity=0.366 Sum_probs=29.5
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNK 166 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds 166 (251)
++-+++.||+|+|||++|+.||+.++...+..|.
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~ 83 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCCCceeecc
Confidence 3458999999999999999999999988776654
No 191
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=96.85 E-value=0.0053 Score=55.33 Aligned_cols=37 Identities=16% Similarity=0.230 Sum_probs=29.2
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc---C--CceEecCC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF---S--GEAINSNK 166 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l---~--~~VIS~Ds 166 (251)
..+..+|+|+|++|+|||||+.+|+..+ + ..++..|.
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp 117 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDP 117 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCC
Confidence 4567899999999999999999998765 2 34666664
No 192
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.85 E-value=0.00095 Score=62.22 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=28.9
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc-CCceEecC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF-SGEAINSN 165 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l-~~~VIS~D 165 (251)
..++-++|.||+|+|||++|+.+|+.+ +..++..+
T Consensus 165 ~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~ 200 (444)
T 2zan_A 165 TPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSIS 200 (444)
T ss_dssp CCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEEC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEe
Confidence 345789999999999999999999998 66655544
No 193
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.84 E-value=0.0006 Score=55.86 Aligned_cols=27 Identities=26% Similarity=0.413 Sum_probs=24.2
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
.+++.+++|.||+|+|||||+..++..
T Consensus 21 i~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 21 IETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 366789999999999999999999884
No 194
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.84 E-value=0.00077 Score=58.08 Aligned_cols=29 Identities=24% Similarity=0.297 Sum_probs=26.9
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSG 159 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~ 159 (251)
.+++.|+|.|++||||||++..|++.++.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 46789999999999999999999999986
No 195
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=96.84 E-value=0.00056 Score=58.79 Aligned_cols=30 Identities=20% Similarity=0.299 Sum_probs=25.7
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..+++.+++|.||+|||||||.+.|+--..
T Consensus 27 ~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 27 NIKEGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 346778999999999999999999986553
No 196
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.80 E-value=0.00034 Score=65.41 Aligned_cols=29 Identities=28% Similarity=0.320 Sum_probs=25.1
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSG 159 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~ 159 (251)
.++.+|+++|.+||||||++++|++.++.
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~ 65 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNF 65 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 45678999999999999999999998763
No 197
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.79 E-value=0.0027 Score=60.76 Aligned_cols=36 Identities=25% Similarity=0.365 Sum_probs=29.9
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhc-----CCceEecCCc
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHF-----SGEAINSNKI 167 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l-----~~~VIS~Ds~ 167 (251)
++.+|+++|++||||||++.+||..+ ...++.+|.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~ 139 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTW 139 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCS
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 57899999999999999999999754 2357888865
No 198
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.75 E-value=0.00084 Score=54.99 Aligned_cols=26 Identities=31% Similarity=0.473 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
+++.+++|.||+|+|||||+..++..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 56789999999999999999988764
No 199
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.74 E-value=0.001 Score=56.25 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=23.3
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
+..++|.||+|+|||++|+.+++..+
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 46789999999999999999998864
No 200
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=96.74 E-value=0.001 Score=59.62 Aligned_cols=27 Identities=30% Similarity=0.407 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.++.+++|+||+||||||+++.|+..+
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999999765
No 201
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.74 E-value=0.00055 Score=56.71 Aligned_cols=25 Identities=20% Similarity=0.367 Sum_probs=22.6
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
+++.|+|+||||||||++.|+..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 6899999999999999999988763
No 202
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.74 E-value=0.00098 Score=59.88 Aligned_cols=26 Identities=35% Similarity=0.517 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
++.+++|+||+||||||+++.|+..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 56799999999999999999999765
No 203
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=96.73 E-value=0.00077 Score=58.01 Aligned_cols=28 Identities=25% Similarity=0.350 Sum_probs=25.0
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.+++.+++|.||+|||||||.+.|+.-+
T Consensus 28 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3677899999999999999999998765
No 204
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=96.73 E-value=0.00066 Score=57.86 Aligned_cols=29 Identities=28% Similarity=0.390 Sum_probs=25.0
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.+++.+++|.||+|||||||.+.|+--..
T Consensus 27 i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EETTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36678999999999999999999986553
No 205
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.71 E-value=0.00092 Score=64.86 Aligned_cols=29 Identities=17% Similarity=0.211 Sum_probs=26.2
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSG 159 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~ 159 (251)
.++.+|+|+|++||||||+|+.||++++.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 35578999999999999999999999985
No 206
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.70 E-value=0.00092 Score=56.56 Aligned_cols=26 Identities=15% Similarity=0.244 Sum_probs=23.5
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
++-|+|.|+-||||||+++.|++.+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 36799999999999999999999884
No 207
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.69 E-value=0.0013 Score=63.09 Aligned_cols=34 Identities=24% Similarity=0.226 Sum_probs=28.6
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSN 165 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D 165 (251)
.++-++|.||+|+|||+||+.++.+.+.+++..+
T Consensus 48 ~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is 81 (476)
T 2ce7_A 48 MPKGILLVGPPGTGKTLLARAVAGEANVPFFHIS 81 (476)
T ss_dssp CCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCC
Confidence 3455999999999999999999999987766543
No 208
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=96.69 E-value=0.00086 Score=58.51 Aligned_cols=29 Identities=17% Similarity=0.070 Sum_probs=25.7
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcCCceE
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFSGEAI 162 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VI 162 (251)
..++|.||+|+|||++|+.+++.++...+
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~~~~~~ 75 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTMDLDFH 75 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTTCCEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence 47899999999999999999999986544
No 209
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=96.69 E-value=0.00088 Score=57.62 Aligned_cols=29 Identities=14% Similarity=0.257 Sum_probs=25.4
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.+++.+++|.||+|||||||.+.|+--+.
T Consensus 25 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46778999999999999999999987653
No 210
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.69 E-value=0.0016 Score=56.13 Aligned_cols=42 Identities=21% Similarity=0.294 Sum_probs=35.3
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceecccc
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGLD 174 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~ls 174 (251)
.++-++|.|+||+||||+|.+|.+ .+..+++-|...+.+.-+
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~-rG~~lvaDD~v~i~~~~~ 56 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALID-RGHQLVCDDVIDLKQENN 56 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHH-TTCEEEESSEEEEEESSS
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH-cCCeEecCCEEEEEEeCC
Confidence 346899999999999999999988 478899888887776544
No 211
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.67 E-value=0.00079 Score=61.36 Aligned_cols=29 Identities=31% Similarity=0.447 Sum_probs=25.8
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++..++|+||||||||||++.|+..++
T Consensus 172 i~~G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred HhcCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 35678999999999999999999998775
No 212
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.67 E-value=0.0012 Score=60.07 Aligned_cols=27 Identities=30% Similarity=0.394 Sum_probs=24.6
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
+++.+++|+||+||||||+++.|+..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999999765
No 213
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.67 E-value=0.0011 Score=60.75 Aligned_cols=28 Identities=21% Similarity=0.323 Sum_probs=24.8
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..++.+++|+|||||||||+.+.|+..+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 4667899999999999999999998765
No 214
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.64 E-value=0.0015 Score=62.75 Aligned_cols=30 Identities=23% Similarity=0.371 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcCCce
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFSGEA 161 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~~V 161 (251)
++..++|.||||+||||+|+.|+..++...
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~ 136 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKF 136 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCe
Confidence 577999999999999999999999987543
No 215
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=96.64 E-value=0.00095 Score=58.37 Aligned_cols=29 Identities=14% Similarity=0.243 Sum_probs=25.4
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.+++.+++|.||+|||||||.+.|+--+.
T Consensus 29 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36778999999999999999999987654
No 216
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=96.63 E-value=0.0015 Score=62.33 Aligned_cols=36 Identities=19% Similarity=0.201 Sum_probs=30.6
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSN 165 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D 165 (251)
.+.++-++|.||||+|||++|+.+++..+..++..+
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn 270 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 270 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEE
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEE
Confidence 355677999999999999999999999987766554
No 217
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=96.61 E-value=0.0012 Score=64.28 Aligned_cols=29 Identities=17% Similarity=0.366 Sum_probs=25.9
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++.+|+|+|++||||||+|+.|+++++
T Consensus 393 gq~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 393 ATQGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cccceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 34568899999999999999999999976
No 218
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=96.61 E-value=0.0014 Score=61.46 Aligned_cols=26 Identities=27% Similarity=0.406 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.+.-++|.||+|+|||++|+.|++.+
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 34567899999999999999999986
No 219
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=96.60 E-value=0.00094 Score=57.08 Aligned_cols=29 Identities=24% Similarity=0.395 Sum_probs=25.4
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.+++.+++|.||+|||||||.+.|+--+.
T Consensus 31 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 36778999999999999999999987654
No 220
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=96.60 E-value=0.0011 Score=57.28 Aligned_cols=27 Identities=33% Similarity=0.352 Sum_probs=24.1
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
..++.+++|.||+|||||||.+.|+--
T Consensus 26 i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 367789999999999999999999874
No 221
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.59 E-value=0.0054 Score=53.16 Aligned_cols=27 Identities=22% Similarity=0.213 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.++.++++.||+|+||||++..++.++
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~ 36 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRL 36 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHH
Confidence 456899999999999999999998876
No 222
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=96.59 E-value=0.00092 Score=58.78 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=25.2
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.+++.+++|.||+|||||||++.|+--+.
T Consensus 34 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 62 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTLLRLLTGYLS 62 (266)
T ss_dssp EETTCEEEEECCTTSCHHHHHHHHTSSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 36778999999999999999999987553
No 223
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.59 E-value=0.0019 Score=49.29 Aligned_cols=27 Identities=19% Similarity=0.466 Sum_probs=23.3
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
+.+...|+|.|++|+|||||..+|...
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcC
Confidence 355678999999999999999999754
No 224
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.58 E-value=0.0013 Score=56.73 Aligned_cols=29 Identities=17% Similarity=0.345 Sum_probs=25.1
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..+++.+++|.||+|+|||||++.|+...
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34677899999999999999999988654
No 225
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=96.58 E-value=0.00097 Score=57.83 Aligned_cols=29 Identities=17% Similarity=0.382 Sum_probs=25.5
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.+++.+++|.||+|||||||.+.|+--+.
T Consensus 32 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36778999999999999999999987654
No 226
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=96.58 E-value=0.0011 Score=57.89 Aligned_cols=30 Identities=17% Similarity=0.242 Sum_probs=25.7
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..+++.+++|.||+|||||||.+.|+--+.
T Consensus 42 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 42 FIPSGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 346778999999999999999999987553
No 227
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=96.58 E-value=0.0013 Score=57.60 Aligned_cols=28 Identities=32% Similarity=0.456 Sum_probs=24.8
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
..+++.+++|.||+|||||||.+.|+--
T Consensus 42 ~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 42 DVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467789999999999999999999875
No 228
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=96.58 E-value=0.00097 Score=57.92 Aligned_cols=29 Identities=24% Similarity=0.411 Sum_probs=25.2
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.+++.+++|.||+|||||||.+.|+--+.
T Consensus 30 i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36778999999999999999999987653
No 229
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.58 E-value=0.0013 Score=58.58 Aligned_cols=37 Identities=24% Similarity=0.252 Sum_probs=29.0
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc----C--CceEecCCc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF----S--GEAINSNKI 167 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l----~--~~VIS~Ds~ 167 (251)
.++.+++|+||+|+||||++..||..+ | ..++.+|.+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~ 145 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY 145 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence 356799999999999999999998654 2 246677763
No 230
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=96.57 E-value=0.00095 Score=59.27 Aligned_cols=29 Identities=17% Similarity=0.343 Sum_probs=25.2
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.+++.+++|.||+|||||||.+.|+--+.
T Consensus 31 i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 36778999999999999999999987553
No 231
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.57 E-value=0.001 Score=57.28 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=25.1
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.+++.+++|.||+|||||||.+.|+--+.
T Consensus 29 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 36678999999999999999999987653
No 232
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.57 E-value=0.0015 Score=51.92 Aligned_cols=25 Identities=16% Similarity=0.363 Sum_probs=22.1
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.+.+|+||+|||||||+.+|.-.++
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHc
Confidence 4899999999999999999987654
No 233
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=96.57 E-value=0.0019 Score=52.38 Aligned_cols=35 Identities=26% Similarity=0.213 Sum_probs=27.4
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcC----CceEecC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFS----GEAINSN 165 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~----~~VIS~D 165 (251)
.+.+.++|+|++|||||||+.+|+..+. ..++..|
T Consensus 28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d 66 (221)
T 2wsm_A 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGD 66 (221)
T ss_dssp HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECS
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecC
Confidence 3457899999999999999999998752 3455555
No 234
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.57 E-value=0.0018 Score=50.21 Aligned_cols=26 Identities=15% Similarity=0.382 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
.+...|+|.|++|+|||||..+|...
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 45578999999999999999999875
No 235
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.57 E-value=0.0014 Score=50.38 Aligned_cols=27 Identities=22% Similarity=0.263 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.+...|+|.|++|+|||||..+|....
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCc
Confidence 445689999999999999999997643
No 236
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.56 E-value=0.0016 Score=58.74 Aligned_cols=37 Identities=27% Similarity=0.302 Sum_probs=29.5
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc---C--CceEecCCc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF---S--GEAINSNKI 167 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l---~--~~VIS~Ds~ 167 (251)
.++.+++|+||+||||||++..||..+ + ..++.+|.+
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~ 143 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF 143 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccc
Confidence 457899999999999999999999765 2 245666754
No 237
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=96.55 E-value=0.00091 Score=57.92 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=22.9
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcCC
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFSG 159 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~~ 159 (251)
-++|.||+|+|||++|+.+++.++.
T Consensus 47 ~vLl~G~~GtGKT~la~~la~~~~~ 71 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAALLPE 71 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred eEEEECCCCccHHHHHHHHHHhCcc
Confidence 4999999999999999999998863
No 238
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=96.54 E-value=0.0017 Score=61.14 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=27.2
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcCCceEec
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFSGEAINS 164 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~ 164 (251)
..++|.||+|+|||++|+.+++..+...+..
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l 81 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERI 81 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEE
Confidence 5799999999999999999999998765544
No 239
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=96.54 E-value=0.0012 Score=58.14 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=25.5
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.+++.+++|.||+|||||||.+.|+--+.
T Consensus 47 i~~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 47 IREGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 46778999999999999999999987654
No 240
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.54 E-value=0.0013 Score=57.34 Aligned_cols=22 Identities=23% Similarity=0.407 Sum_probs=20.8
Q ss_pred EEEEcCCccCHHHHHHHHHHhc
Q 045245 136 VFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 136 IvIsGpTGSGKTTLA~~LAk~l 157 (251)
++|.||+|+||||+++.+++.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999964
No 241
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=96.53 E-value=0.0012 Score=58.00 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=26.0
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..+++.+++|.||+|||||||.+.|+--+.
T Consensus 41 ~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 41 TLYPGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp EECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 347778999999999999999999987654
No 242
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.53 E-value=0.0013 Score=60.54 Aligned_cols=27 Identities=22% Similarity=0.306 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.++.+++|+|||||||||+.+.|+..+
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 344599999999999999999998765
No 243
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.52 E-value=0.0013 Score=59.12 Aligned_cols=27 Identities=33% Similarity=0.496 Sum_probs=24.7
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFSG 159 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~ 159 (251)
...++|+||+|||||||++.|+..++.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 678999999999999999999998764
No 244
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=96.52 E-value=0.0015 Score=56.66 Aligned_cols=27 Identities=19% Similarity=0.239 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
++ .+++|.||+|||||||.+.|+--..
T Consensus 23 ~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 23 GR-DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CC-EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56 7999999999999999999987654
No 245
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=96.52 E-value=0.0015 Score=58.09 Aligned_cols=26 Identities=27% Similarity=0.425 Sum_probs=22.9
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
++.++|.||||+|||+||..++....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999999997543
No 246
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.51 E-value=0.011 Score=46.46 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
.+...|+|.|++|+|||||..+|...
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45678999999999999999999865
No 247
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.50 E-value=0.0013 Score=60.00 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=25.2
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..+++-++|+||||+|||++++.+++++
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3567889999999999999999999987
No 248
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=96.50 E-value=0.0018 Score=51.85 Aligned_cols=27 Identities=22% Similarity=0.329 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.+...|+|.|++|+|||||..+|....
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCC
Confidence 455789999999999999999998643
No 249
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.50 E-value=0.0017 Score=61.03 Aligned_cols=28 Identities=18% Similarity=0.292 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.++.+++|+|||||||||+.+.|+..++
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 4567999999999999999999988775
No 250
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=96.49 E-value=0.0013 Score=57.53 Aligned_cols=29 Identities=14% Similarity=0.224 Sum_probs=25.4
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.+++.+++|.||+|||||||.+.|+--..
T Consensus 38 i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46778999999999999999999987654
No 251
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=96.49 E-value=0.0014 Score=57.38 Aligned_cols=29 Identities=28% Similarity=0.346 Sum_probs=25.2
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.+++.+++|.||+|||||||.+.|+--..
T Consensus 30 i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 30 INEGECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 36778999999999999999999987553
No 252
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.49 E-value=0.0016 Score=56.66 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=24.2
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFSG 159 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~ 159 (251)
+..++|.||+|+|||++|+.+++.++.
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 457899999999999999999998864
No 253
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.49 E-value=0.0018 Score=66.13 Aligned_cols=38 Identities=18% Similarity=0.184 Sum_probs=32.6
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNK 166 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds 166 (251)
....++=|++.||+|+|||+||+++|.+++..++..|.
T Consensus 234 g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~ 271 (806)
T 3cf2_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLING 271 (806)
T ss_dssp CCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEH
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEh
Confidence 34556789999999999999999999999988777654
No 254
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.48 E-value=0.0019 Score=59.84 Aligned_cols=28 Identities=32% Similarity=0.476 Sum_probs=24.9
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..++.+++|+||+||||||+++.|+..+
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 3567899999999999999999999765
No 255
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=96.47 E-value=0.0058 Score=61.29 Aligned_cols=34 Identities=21% Similarity=0.285 Sum_probs=27.6
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhc----------CCceEecCC
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHF----------SGEAINSNK 166 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l----------~~~VIS~Ds 166 (251)
++-++|+||+|+|||++|+.+++.+ +..++..|.
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 234 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQM 234 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeeh
Confidence 3457899999999999999999987 556666553
No 256
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.46 E-value=0.0015 Score=56.17 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=23.6
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
.+++.+++|.||+|||||||+..++..
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 366789999999999999999998853
No 257
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.46 E-value=0.0015 Score=56.44 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=21.4
Q ss_pred EEEEcCCccCHHHHHHHHHHhcC
Q 045245 136 VFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 136 IvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
++|.||+|+|||++|+.+++.++
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999999864
No 258
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.46 E-value=0.002 Score=50.44 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
+...|+|.|++|+|||||.++|...
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4578999999999999999999864
No 259
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.46 E-value=0.0018 Score=55.38 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=24.6
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
+++.|+|.|+.||||||+++.|++.+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 367999999999999999999999884
No 260
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=96.45 E-value=0.0023 Score=52.11 Aligned_cols=27 Identities=30% Similarity=0.249 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.+.++|+|+|.+|||||||+.+|+...
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 355788999999999999999999874
No 261
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.45 E-value=0.0016 Score=58.04 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
+.++++|+|++||||||+.+.|....
T Consensus 3 ~i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 3 PIAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp CEEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cccEEEEEecCCCCHHHHHHHHHhhc
Confidence 45789999999999999999998754
No 262
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=96.44 E-value=0.0011 Score=56.76 Aligned_cols=29 Identities=28% Similarity=0.346 Sum_probs=25.1
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.+++.+++|.||+|||||||.+.|+--+.
T Consensus 32 i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp EETTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 36678999999999999999999987654
No 263
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.43 E-value=0.0015 Score=54.61 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=21.6
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhc
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.+++|.||+|+||||+.+.|+..+
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCChHHHHHHHHHhhc
Confidence 468999999999999999999865
No 264
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.43 E-value=0.002 Score=54.81 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=22.0
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcC
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.++|.||+|+|||++|+.+++.++
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc
Confidence 499999999999999999999863
No 265
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.43 E-value=0.0012 Score=56.12 Aligned_cols=26 Identities=31% Similarity=0.613 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
+++.+++|.||+|||||||++.|+-.
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 56679999999999999999999865
No 266
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.42 E-value=0.002 Score=48.66 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=21.5
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhc
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
+.|+|.|++|+|||||..++....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 578999999999999999998754
No 267
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=96.41 E-value=0.0028 Score=52.92 Aligned_cols=36 Identities=19% Similarity=0.297 Sum_probs=28.3
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc----CCceEecCC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF----SGEAINSNK 166 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l----~~~VIS~Ds 166 (251)
.+..+++++|..||||||++..|+..+ ...++..|.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~ 51 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDT 51 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCS
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 345789999999999999999999654 344677664
No 268
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.41 E-value=0.002 Score=64.88 Aligned_cols=36 Identities=19% Similarity=0.201 Sum_probs=30.8
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSN 165 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D 165 (251)
...+..++|.||+|+||||||+.|+..++...+..+
T Consensus 235 i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~ 270 (806)
T 1ypw_A 235 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 270 (806)
T ss_dssp CCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEE
T ss_pred CCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEE
Confidence 456678999999999999999999999987766554
No 269
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.41 E-value=0.0021 Score=53.13 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=22.1
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
++++++.||+|+||||++.+++.++
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 5789999999999999998888764
No 270
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.40 E-value=0.0024 Score=49.21 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
++...|+|.|++|+|||||..+|...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 55678999999999999999999764
No 271
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.40 E-value=0.0027 Score=61.19 Aligned_cols=33 Identities=27% Similarity=0.288 Sum_probs=27.8
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFSGEAINSNK 166 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds 166 (251)
+-++|.||+|+|||+||+.++...+...+..+.
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g 97 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGEARVPFITASG 97 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeh
Confidence 449999999999999999999998876665543
No 272
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=96.39 E-value=0.0015 Score=56.98 Aligned_cols=28 Identities=29% Similarity=0.280 Sum_probs=24.8
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
+++.+++|.||+|||||||.+.|+--+.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6678999999999999999999987653
No 273
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=96.39 E-value=0.0015 Score=57.05 Aligned_cols=29 Identities=21% Similarity=0.328 Sum_probs=25.0
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.+++.+++|.||+|||||||.+.|+--+.
T Consensus 23 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 36678999999999999999999987554
No 274
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=96.39 E-value=0.0015 Score=57.95 Aligned_cols=29 Identities=24% Similarity=0.157 Sum_probs=25.4
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.+++.+++|.||+|||||||.+.|+--+.
T Consensus 44 i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 46778999999999999999999987654
No 275
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.36 E-value=0.0025 Score=48.87 Aligned_cols=26 Identities=23% Similarity=0.448 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
.+...|+|.|++|+|||||..+|...
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 44578999999999999999999875
No 276
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=96.36 E-value=0.0024 Score=62.92 Aligned_cols=27 Identities=26% Similarity=0.395 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..+.-++|.||+|+|||++|+.||+.+
T Consensus 199 ~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 334558999999999999999999986
No 277
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=96.34 E-value=0.0015 Score=63.57 Aligned_cols=30 Identities=27% Similarity=0.360 Sum_probs=26.7
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
...++.+++|+|++|||||||++.|+..++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 345778999999999999999999999885
No 278
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=96.34 E-value=0.0051 Score=49.63 Aligned_cols=27 Identities=15% Similarity=0.102 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.....|+|.|++|+|||||..+|....
T Consensus 27 ~~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 27 TVQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CCSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 445789999999999999999997653
No 279
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.34 E-value=0.0024 Score=47.86 Aligned_cols=24 Identities=33% Similarity=0.490 Sum_probs=21.2
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhc
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..|++.|++|+|||||..+|....
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 468999999999999999998653
No 280
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.33 E-value=0.0026 Score=48.21 Aligned_cols=25 Identities=20% Similarity=0.210 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
....|+|.|++|+|||||..+|...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC
Confidence 3467999999999999999999864
No 281
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=96.33 E-value=0.0015 Score=52.35 Aligned_cols=27 Identities=19% Similarity=0.132 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.++..++|+|++|+|||||.+.|+...
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 566789999999999999999987543
No 282
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.31 E-value=0.0026 Score=51.31 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.+...|+|.|++|+|||||..+|....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 445789999999999999999998764
No 283
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=96.30 E-value=0.0025 Score=51.23 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=22.2
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
...++|.|++|||||||.+.++...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3679999999999999999998754
No 284
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=96.29 E-value=0.0031 Score=53.83 Aligned_cols=32 Identities=16% Similarity=0.143 Sum_probs=26.1
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcCC--ceEecC
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFSG--EAINSN 165 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~~--~VIS~D 165 (251)
..++|.||+|+|||+|++.++++.+. ..+++.
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~ 64 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLR 64 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEch
Confidence 59999999999999999999988753 344443
No 285
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=96.29 E-value=0.0027 Score=53.74 Aligned_cols=22 Identities=36% Similarity=0.520 Sum_probs=21.1
Q ss_pred EEEEcCCccCHHHHHHHHHHhc
Q 045245 136 VFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 136 IvIsGpTGSGKTTLA~~LAk~l 157 (251)
++|.||+|+|||++|+.+++.+
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHHh
Confidence 8999999999999999999986
No 286
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=96.29 E-value=0.0026 Score=49.58 Aligned_cols=23 Identities=17% Similarity=0.234 Sum_probs=21.0
Q ss_pred eEEEEEcCCccCHHHHHHHHHHh
Q 045245 134 KVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
..|+|.|++|+|||||.++|...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 67999999999999999999864
No 287
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.29 E-value=0.0021 Score=56.64 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=21.6
Q ss_pred EEEEcCCccCHHHHHHHHHHhcC
Q 045245 136 VFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 136 IvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
+++.||+|+||||+|+.+++.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 89999999999999999999864
No 288
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=96.28 E-value=0.0026 Score=55.86 Aligned_cols=31 Identities=19% Similarity=0.319 Sum_probs=28.0
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcCCceEec
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFSGEAINS 164 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~ 164 (251)
++|+|+|+.||||||+|..|+++++..+++.
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~ 32 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQL 32 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEECCT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEEec
Confidence 5899999999999999999999888877764
No 289
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.28 E-value=0.0031 Score=49.66 Aligned_cols=27 Identities=22% Similarity=0.305 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.+...|+|.|++|||||||..+|....
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 456789999999999999999998754
No 290
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.28 E-value=0.0028 Score=54.06 Aligned_cols=31 Identities=19% Similarity=0.303 Sum_probs=26.6
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcCCceEec
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFSGEAINS 164 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~ 164 (251)
..++|.||.|+|||+|++.++++.+...+++
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~ 62 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERPGILIDC 62 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSSEEEEEH
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcCcEEEEe
Confidence 6999999999999999999999886445554
No 291
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.28 E-value=0.0026 Score=49.02 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.+...|+|.|++|+|||||..+|....
T Consensus 16 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 16 LALHKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhhCC
Confidence 345789999999999999999998643
No 292
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.27 E-value=0.0024 Score=49.04 Aligned_cols=26 Identities=19% Similarity=0.399 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
.....|+|.|++|+|||||..+|...
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcC
Confidence 44568999999999999999999653
No 293
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=96.27 E-value=0.0016 Score=58.98 Aligned_cols=30 Identities=13% Similarity=0.236 Sum_probs=26.1
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..+++.+++|+||+|||||||++.|+.-+.
T Consensus 76 ~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 76 TVMPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp EECTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred EEcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 347788999999999999999999987664
No 294
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.26 E-value=0.016 Score=49.56 Aligned_cols=23 Identities=30% Similarity=0.310 Sum_probs=20.9
Q ss_pred eEEEEEcCCccCHHHHHHHHHHh
Q 045245 134 KVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
..|+|.|++|+|||||..+|...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 67999999999999999999764
No 295
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.26 E-value=0.0031 Score=47.50 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=21.8
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
...|+|.|++|+|||||..+|....
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCc
Confidence 4679999999999999999998643
No 296
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.26 E-value=0.0028 Score=49.98 Aligned_cols=27 Identities=33% Similarity=0.309 Sum_probs=22.4
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
......|+|.|++|+|||||..+|...
T Consensus 4 ~~~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 4 QNVKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CceEEEEEEECCCCCCHHHHHHHHhcC
Confidence 345578999999999999999999875
No 297
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=96.26 E-value=0.0026 Score=50.45 Aligned_cols=27 Identities=22% Similarity=0.243 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.+...|+|.|++|+|||||..+|....
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCC
Confidence 445789999999999999999998654
No 298
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.26 E-value=0.0016 Score=58.82 Aligned_cols=28 Identities=29% Similarity=0.307 Sum_probs=25.0
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.++..++|+||||||||||++.|+..++
T Consensus 169 ~~g~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 4567999999999999999999998775
No 299
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=96.25 E-value=0.0016 Score=63.00 Aligned_cols=35 Identities=17% Similarity=0.311 Sum_probs=28.8
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcCC-----ceEecCC
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFSG-----EAINSNK 166 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~~-----~VIS~Ds 166 (251)
.+.+|+++|++||||||+|+.|+++++. .++..|.
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ 410 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDV 410 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchH
Confidence 4678999999999999999999998763 4555554
No 300
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.25 E-value=0.0028 Score=53.74 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=21.1
Q ss_pred EEEEcCCccCHHHHHHHHHHhc
Q 045245 136 VFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 136 IvIsGpTGSGKTTLA~~LAk~l 157 (251)
++|.||+|+|||++|+.+++.+
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 9999999999999999999986
No 301
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.25 E-value=0.0028 Score=51.77 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHH
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAI 155 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk 155 (251)
+++.+++|.|+||+|||+||..++.
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~ 52 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 6678999999999999999998764
No 302
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.25 E-value=0.0031 Score=49.04 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
.+...|+|.|++|+|||||..+|...
T Consensus 16 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 16 LPTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 44568999999999999999999864
No 303
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=96.22 E-value=0.0037 Score=61.20 Aligned_cols=32 Identities=22% Similarity=0.364 Sum_probs=28.0
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcCCceEecCC
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFSGEAINSNK 166 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds 166 (251)
.++|.||||+|||++|+.|++.++..++..|.
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~ 521 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDM 521 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCEEEEec
Confidence 69999999999999999999999877665553
No 304
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=96.22 E-value=0.0023 Score=57.19 Aligned_cols=29 Identities=24% Similarity=0.395 Sum_probs=25.4
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.+++.+++|.||+|||||||.+.|+--+.
T Consensus 61 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 61 IERGQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred EcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 46778999999999999999999987653
No 305
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.22 E-value=0.0029 Score=48.42 Aligned_cols=27 Identities=15% Similarity=0.122 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.....|+|.|++|+|||||..+|....
T Consensus 13 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCC
Confidence 445789999999999999999998654
No 306
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.21 E-value=0.0033 Score=47.28 Aligned_cols=25 Identities=24% Similarity=0.434 Sum_probs=21.7
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
...|+|.|++|+|||||..++....
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCC
Confidence 3579999999999999999998643
No 307
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.21 E-value=0.0032 Score=49.00 Aligned_cols=27 Identities=26% Similarity=0.170 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.....|+|.|++|+|||||..+|....
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCc
Confidence 344689999999999999999997654
No 308
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=96.21 E-value=0.003 Score=48.96 Aligned_cols=26 Identities=19% Similarity=0.184 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
.+...|+|.|++|+|||||..++...
T Consensus 5 ~~~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 5 IPELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp CCEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 44578999999999999999999874
No 309
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.20 E-value=0.019 Score=51.45 Aligned_cols=38 Identities=13% Similarity=0.157 Sum_probs=29.8
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhc---C--CceEecCC
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHF---S--GEAINSNK 166 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l---~--~~VIS~Ds 166 (251)
...+..+++|+|++|+||||++..|+..+ + ..++..|.
T Consensus 52 ~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 52 YCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp GCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred ccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 34677899999999999999999998654 2 34666665
No 310
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=96.19 E-value=0.0034 Score=48.51 Aligned_cols=27 Identities=26% Similarity=0.242 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.+...|+|.|++|+|||||..++....
T Consensus 6 ~~~~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 6 SRFIKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp -CCCEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcCC
Confidence 455789999999999999999998643
No 311
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=96.18 E-value=0.0047 Score=55.99 Aligned_cols=27 Identities=15% Similarity=0.066 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
+...+|+|+|+||||||||..+|...+
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 447899999999999999999998753
No 312
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.17 E-value=0.036 Score=50.02 Aligned_cols=29 Identities=17% Similarity=0.141 Sum_probs=25.2
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
...++.++.|+||+|||||||.+.|+..+
T Consensus 51 ~~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 51 QTGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp GCCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 34677899999999999999999998654
No 313
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=96.16 E-value=0.0041 Score=55.00 Aligned_cols=36 Identities=19% Similarity=0.231 Sum_probs=27.7
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcC-----CceEecCC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFS-----GEAINSNK 166 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds 166 (251)
..+..++|.||||+|||++|+.+++..+ ...+++..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~ 63 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAA 63 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSS
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCC
Confidence 4456789999999999999999998542 34566544
No 314
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.14 E-value=0.003 Score=49.07 Aligned_cols=26 Identities=23% Similarity=0.475 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
.+...|+|.|++|+|||||..+|...
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECcCCCCHHHHHHHHHcC
Confidence 34578999999999999999999853
No 315
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.14 E-value=0.0043 Score=47.77 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
.+...|+|.|++|+|||||..+|...
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred CceEEEEEECcCCCCHHHHHHHHHhC
Confidence 34467999999999999999999864
No 316
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.13 E-value=0.0035 Score=47.54 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=21.2
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHh
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
...|+|.|++|+|||||..+|...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999999863
No 317
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=96.13 E-value=0.0024 Score=61.51 Aligned_cols=28 Identities=29% Similarity=0.374 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..+..++|+|||||||||+.+.|+...+
T Consensus 258 ~~g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp HTTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4566799999999999999999988765
No 318
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=96.13 E-value=0.0032 Score=58.52 Aligned_cols=29 Identities=31% Similarity=0.443 Sum_probs=25.4
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++.+++|.||+|||||||.+.|+--..
T Consensus 27 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 27 LDPGEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp ECTTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred EcCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 36778999999999999999999987654
No 319
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.11 E-value=0.004 Score=56.29 Aligned_cols=37 Identities=19% Similarity=0.298 Sum_probs=29.1
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc---CC--ceEecCCc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF---SG--EAINSNKI 167 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l---~~--~VIS~Ds~ 167 (251)
.++++++|+||+|+||||++..||..+ +. .++.+|..
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF 144 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 567899999999999999999998765 22 35666653
No 320
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=96.11 E-value=0.0038 Score=50.10 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=21.6
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhc
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..++|.|++|+|||||.+.|....
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECcCCCCHHHHHHHHhcCC
Confidence 579999999999999999998753
No 321
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=96.09 E-value=0.0037 Score=49.40 Aligned_cols=26 Identities=27% Similarity=0.226 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
++..|+|+|++|+|||||.++|....
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44689999999999999999998653
No 322
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.09 E-value=0.004 Score=47.62 Aligned_cols=25 Identities=28% Similarity=0.247 Sum_probs=21.4
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
...|+|.|++|+|||||..+|....
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEEEECCCCccHHHHHHHHhcCC
Confidence 4679999999999999999997643
No 323
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=96.08 E-value=0.0035 Score=58.01 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=25.2
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.+++.+++|.||+|||||||.+.|+--..
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 26 VKDGEFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp ECTTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred EcCCCEEEEEcCCCchHHHHHHHHHCCCC
Confidence 36778999999999999999999987553
No 324
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.07 E-value=0.0034 Score=48.62 Aligned_cols=26 Identities=31% Similarity=0.483 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
+...|+|.|++|+|||||..+|....
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhCC
Confidence 44679999999999999999998643
No 325
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.07 E-value=0.0032 Score=47.66 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
+...|+|.|++|+|||||..+|...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 3467999999999999999999864
No 326
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.06 E-value=0.0034 Score=47.65 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=22.0
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
...|+|.|++|+|||||..+|....
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4679999999999999999998754
No 327
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=96.05 E-value=0.0031 Score=55.54 Aligned_cols=27 Identities=26% Similarity=0.410 Sum_probs=23.9
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.+ +.+++|.||+|||||||.+.|+--.
T Consensus 28 i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 28 VN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 36 7899999999999999999998755
No 328
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=96.05 E-value=0.0037 Score=57.93 Aligned_cols=29 Identities=17% Similarity=0.382 Sum_probs=25.3
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.+++.+++|.||+|||||||.+.|+--..
T Consensus 26 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 26 IKDGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred ECCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 36778999999999999999999987654
No 329
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.05 E-value=0.0038 Score=48.54 Aligned_cols=27 Identities=22% Similarity=0.182 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.....|+|.|++|+|||||..+|....
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCC
Confidence 344689999999999999999998643
No 330
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.04 E-value=0.0036 Score=47.90 Aligned_cols=24 Identities=25% Similarity=0.354 Sum_probs=21.1
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHh
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
...|+|.|++|+|||||..+|...
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 367899999999999999999854
No 331
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=96.04 E-value=0.0051 Score=55.85 Aligned_cols=29 Identities=28% Similarity=0.450 Sum_probs=25.6
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..+++.++.|.||+|||||||+..++-..
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34677899999999999999999998765
No 332
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=96.03 E-value=0.0034 Score=58.11 Aligned_cols=29 Identities=21% Similarity=0.218 Sum_probs=25.2
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.+++.+++|.||+|||||||.+.|+--..
T Consensus 38 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 38 IREGEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 36678999999999999999999987553
No 333
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=96.03 E-value=0.0038 Score=58.03 Aligned_cols=29 Identities=17% Similarity=0.187 Sum_probs=25.2
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.+++.+++|.||+|||||||.+.|+--..
T Consensus 34 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 34 IKDGEFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred ECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 36778999999999999999999987553
No 334
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.01 E-value=0.0036 Score=59.48 Aligned_cols=36 Identities=17% Similarity=0.294 Sum_probs=28.9
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhc---C--CceEecCCc
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHF---S--GEAINSNKI 167 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l---~--~~VIS~Ds~ 167 (251)
++.+|+++||+||||||++..||..+ + ..++.+|.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 57899999999999999999998655 2 346777753
No 335
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.01 E-value=0.0048 Score=46.69 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=20.8
Q ss_pred eEEEEEcCCccCHHHHHHHHHHh
Q 045245 134 KVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
..|+|.|++|+|||||..+|...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 57899999999999999999864
No 336
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.00 E-value=0.0039 Score=47.49 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
....|+|.|++|+|||||..++...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3467999999999999999999865
No 337
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.00 E-value=0.0046 Score=48.82 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.+...|+|.|++|||||||..+|....
T Consensus 12 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 12 LALHKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCC
Confidence 445689999999999999999998643
No 338
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=95.99 E-value=0.004 Score=58.10 Aligned_cols=30 Identities=20% Similarity=0.235 Sum_probs=25.9
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..+++.+++|.||+|||||||.+.|+--..
T Consensus 50 ~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 50 HVPAGQIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp EECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEcCCCEEEEEcCCCchHHHHHHHHhcCCC
Confidence 347788999999999999999999987553
No 339
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=95.99 E-value=0.004 Score=58.33 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=25.4
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.+++.+++|.||+|||||||.+.|+--..
T Consensus 26 i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 26 IHEGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp ECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred ECCCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 36778999999999999999999987654
No 340
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.99 E-value=0.0048 Score=46.82 Aligned_cols=23 Identities=17% Similarity=0.401 Sum_probs=20.8
Q ss_pred eEEEEEcCCccCHHHHHHHHHHh
Q 045245 134 KVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
..|+|.|++|+|||||..+|...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 57899999999999999999854
No 341
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=95.98 E-value=0.0062 Score=59.64 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.+.-++|+||+|+|||++|+.|++.+
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999987
No 342
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=95.97 E-value=0.0037 Score=57.97 Aligned_cols=28 Identities=18% Similarity=0.190 Sum_probs=24.7
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
+++.+++|.||+|||||||.+.|+--..
T Consensus 27 ~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 27 KDGEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 5678999999999999999999987554
No 343
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.97 E-value=0.004 Score=47.10 Aligned_cols=24 Identities=17% Similarity=0.349 Sum_probs=21.1
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhc
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..|+|.|++|+|||||..+|....
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999997643
No 344
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.97 E-value=0.0048 Score=47.69 Aligned_cols=25 Identities=16% Similarity=0.175 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
....|+|.|++|+|||||..+|...
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999864
No 345
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=95.97 E-value=0.0031 Score=58.02 Aligned_cols=29 Identities=21% Similarity=0.227 Sum_probs=25.2
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.+++.+++|.||+|||||||.+.|+--..
T Consensus 23 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 23 VESGEYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp ECTTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred EcCCCEEEEECCCCccHHHHHHHHHcCCC
Confidence 36778999999999999999999987553
No 346
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.97 E-value=0.0046 Score=60.25 Aligned_cols=28 Identities=29% Similarity=0.337 Sum_probs=24.8
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..++.+++|+||+||||||+++.|+..+
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 4567899999999999999999998765
No 347
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.95 E-value=0.0029 Score=59.26 Aligned_cols=29 Identities=17% Similarity=0.397 Sum_probs=25.1
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcCCce
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFSGEA 161 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~V 161 (251)
...|+|+||+|+||||+++.|++.++...
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 34699999999999999999999887544
No 348
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.95 E-value=0.0036 Score=59.01 Aligned_cols=35 Identities=26% Similarity=0.423 Sum_probs=28.9
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhc-----CCceEecCC
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHF-----SGEAINSNK 166 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l-----~~~VIS~Ds 166 (251)
++++|+|+|++|+||||++.+||..+ ...++.+|.
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~ 137 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADT 137 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 35789999999999999999999865 356777775
No 349
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=95.94 E-value=0.0071 Score=55.48 Aligned_cols=40 Identities=13% Similarity=0.287 Sum_probs=33.8
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceeccc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYKGL 173 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk~l 173 (251)
++-++|.|+||+||||+|..|.++ +..+++-|..-+++.=
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~dD~~~i~~~~ 183 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR-GHRLVADDNVEIREIS 183 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCEEEESSEEEEEESS
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc-CCceecCCeEEEEEcC
Confidence 578999999999999999999875 7788888887776543
No 350
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=95.94 E-value=0.003 Score=58.14 Aligned_cols=29 Identities=17% Similarity=0.131 Sum_probs=25.1
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.+++.+++|.||+|||||||.+.|+--..
T Consensus 28 i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 28 IENGERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp ECTTCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred ECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 36778999999999999999999987553
No 351
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=95.93 E-value=0.003 Score=58.24 Aligned_cols=32 Identities=19% Similarity=0.205 Sum_probs=27.9
Q ss_pred ccCCCCeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245 128 MNFNKKKVVFVMGATATGKTKLSIDLAIHFSG 159 (251)
Q Consensus 128 ~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~ 159 (251)
++.++++.|+|.|+-||||||+++.|++.++.
T Consensus 2 ~~~~~~~fI~~EG~dGaGKTT~~~~La~~L~~ 33 (334)
T 1p6x_A 2 SHMVTIVRIYLDGVYGIGKSTTGRVMASAASG 33 (334)
T ss_dssp CCEEEEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 34566789999999999999999999999864
No 352
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.92 E-value=0.0042 Score=47.76 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=21.8
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
...|+|.|++|+|||||..+|....
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 4679999999999999999998643
No 353
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.92 E-value=0.0047 Score=48.45 Aligned_cols=26 Identities=31% Similarity=0.469 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
+...|+|.|++|+|||||+.+|....
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcCC
Confidence 34679999999999999999998653
No 354
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.91 E-value=0.005 Score=49.30 Aligned_cols=29 Identities=21% Similarity=0.288 Sum_probs=23.1
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
...+...|+|.|++|+|||||..+|....
T Consensus 20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 20 PLVRYRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp ---CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred CCCCcEEEEEECCCCcCHHHHHHHHHhCC
Confidence 33456789999999999999999998754
No 355
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.91 E-value=0.0051 Score=49.45 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.+...|+|.|++|+|||||..+|....
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345789999999999999999998653
No 356
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=95.89 E-value=0.0047 Score=57.78 Aligned_cols=29 Identities=21% Similarity=0.273 Sum_probs=25.1
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..+++.+++|.||+|||||||.+.|+--.
T Consensus 43 ~i~~Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 43 SISPGQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp EECTTCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred EEcCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 34778899999999999999999998643
No 357
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=95.89 E-value=0.004 Score=49.32 Aligned_cols=23 Identities=30% Similarity=0.436 Sum_probs=20.6
Q ss_pred eEEEEEcCCccCHHHHHHHHHHh
Q 045245 134 KVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
..|+|.|++|+|||||.++++..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~ 25 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKT 25 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999863
No 358
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.89 E-value=0.006 Score=48.75 Aligned_cols=25 Identities=16% Similarity=0.428 Sum_probs=21.4
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
+.+.+|.||+|||||||..+|.-.+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4688999999999999999886544
No 359
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.87 E-value=0.012 Score=51.37 Aligned_cols=28 Identities=14% Similarity=0.107 Sum_probs=24.8
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..++++.++.||.||||||.+..++.++
T Consensus 25 ~~~G~l~vitG~MgsGKTT~lL~~a~r~ 52 (214)
T 2j9r_A 25 NQNGWIEVICGSMFSGKSEELIRRVRRT 52 (214)
T ss_dssp CCSCEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 3567899999999999999999998876
No 360
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=95.86 E-value=0.0046 Score=54.42 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=22.7
Q ss_pred CCeEEEE--EcCCccCHHHHHHHHHHhc
Q 045245 132 KKKVVFV--MGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 132 k~kiIvI--sGpTGSGKTTLA~~LAk~l 157 (251)
.+..++| +||+|+|||+|++.+++.+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 4567888 9999999999999999875
No 361
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.86 E-value=0.0059 Score=48.57 Aligned_cols=26 Identities=15% Similarity=0.349 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
.+...|+|.|++|+|||||..+|...
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 44578999999999999999999865
No 362
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.85 E-value=0.0068 Score=51.11 Aligned_cols=27 Identities=19% Similarity=0.179 Sum_probs=24.4
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.++++.++.||.||||||.+..++.++
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~ 32 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRA 32 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 456899999999999999999998876
No 363
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=95.85 E-value=0.0047 Score=54.28 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=21.8
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++|+||+|+|||||.+.|+....
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3688999999999999999997653
No 364
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.80 E-value=0.0047 Score=47.86 Aligned_cols=25 Identities=32% Similarity=0.554 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHH
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAI 155 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk 155 (251)
.+...|+|.|++|+|||||..++..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999999874
No 365
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.79 E-value=0.0058 Score=47.14 Aligned_cols=26 Identities=15% Similarity=0.369 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
.....|+|.|++|+|||||..+|...
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcC
Confidence 33467999999999999999999864
No 366
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.79 E-value=0.0068 Score=53.83 Aligned_cols=29 Identities=10% Similarity=0.140 Sum_probs=25.4
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSG 159 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~ 159 (251)
.-+..+++.||+|+|||++|+.+|+.+..
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~~l~~ 50 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSRYLLC 50 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CcceeEEEECCCCchHHHHHHHHHHHHhC
Confidence 34567999999999999999999999864
No 367
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.77 E-value=0.0065 Score=47.91 Aligned_cols=27 Identities=26% Similarity=0.256 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.+...|+|.|++|+|||||..+|....
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcCC
Confidence 344679999999999999999998743
No 368
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=95.77 E-value=0.0058 Score=54.22 Aligned_cols=26 Identities=15% Similarity=0.263 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.+.+++|+||+|+|||||.+.|+ ...
T Consensus 164 ~G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 164 EGFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred cCcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 45799999999999999999999 654
No 369
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=95.77 E-value=0.0063 Score=48.61 Aligned_cols=26 Identities=15% Similarity=0.284 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
.....|+|.|++|+|||||..+|...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 6 DYLFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcC
Confidence 34468999999999999999999764
No 370
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.76 E-value=0.0063 Score=61.03 Aligned_cols=32 Identities=28% Similarity=0.418 Sum_probs=26.2
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhc---CCceEecC
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHF---SGEAINSN 165 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l---~~~VIS~D 165 (251)
..++|.||||+|||++|+.|++.+ +..++..|
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~ 623 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID 623 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEe
Confidence 479999999999999999999987 44455444
No 371
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.73 E-value=0.0067 Score=46.26 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=19.9
Q ss_pred eEEEEEcCCccCHHHHHHHHHH
Q 045245 134 KVVFVMGATATGKTKLSIDLAI 155 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk 155 (251)
..|+|.|++|+|||||..++..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999974
No 372
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.73 E-value=0.0064 Score=47.28 Aligned_cols=27 Identities=15% Similarity=0.022 Sum_probs=22.8
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
....|+|.|++|+|||||.+.|...+.
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhcc
Confidence 346799999999999999988877664
No 373
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.72 E-value=0.0062 Score=50.76 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.+...|+|+|++|+|||||...|....
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g~~ 53 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILGRK 53 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHcCCC
Confidence 445789999999999999999998644
No 374
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=95.72 E-value=0.0049 Score=58.55 Aligned_cols=32 Identities=34% Similarity=0.353 Sum_probs=26.6
Q ss_pred hhccCCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 126 ITMNFNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 126 ~~~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
+.-...++.+++|.||+|||||||++.|+.-.
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 33445678999999999999999999998654
No 375
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.70 E-value=0.0069 Score=46.65 Aligned_cols=26 Identities=23% Similarity=0.231 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
+...|+|.|++|+|||||..+|....
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCC
Confidence 34679999999999999999997643
No 376
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.70 E-value=0.007 Score=46.72 Aligned_cols=25 Identities=32% Similarity=0.363 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
+...|+|.|++|+|||||..++...
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcC
Confidence 3467999999999999999999854
No 377
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.70 E-value=0.0071 Score=45.98 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.8
Q ss_pred eEEEEEcCCccCHHHHHHHHHH
Q 045245 134 KVVFVMGATATGKTKLSIDLAI 155 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk 155 (251)
..|+|.|++|+|||||..++..
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEEECCCCCCHHHHHHHHcC
Confidence 4789999999999999999964
No 378
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.69 E-value=0.0071 Score=53.69 Aligned_cols=35 Identities=20% Similarity=0.445 Sum_probs=27.2
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhc---CC--ceEecCC
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHF---SG--EAINSNK 166 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l---~~--~VIS~Ds 166 (251)
++++++|+|++|+||||++..||..+ +. .++.+|.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~ 136 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc
Confidence 56789999999999999999998765 22 3555554
No 379
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=95.68 E-value=0.0058 Score=58.75 Aligned_cols=30 Identities=17% Similarity=0.366 Sum_probs=26.4
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..+++..++|.||+|||||||++.|+.-+.
T Consensus 365 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 365 SIPQGKTVALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 457788999999999999999999987664
No 380
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.67 E-value=0.0081 Score=45.56 Aligned_cols=23 Identities=26% Similarity=0.417 Sum_probs=20.3
Q ss_pred EEEEEcCCccCHHHHHHHHHHhc
Q 045245 135 VVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.|+|.|++|+|||||..++....
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999997643
No 381
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.67 E-value=0.0091 Score=46.86 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
.....|+|.|++|+|||||..+|...
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcC
Confidence 34568999999999999999999864
No 382
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.66 E-value=0.0033 Score=63.33 Aligned_cols=35 Identities=26% Similarity=0.290 Sum_probs=29.6
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSN 165 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~D 165 (251)
..++.++|.||+|+|||+||+.||..++..++..+
T Consensus 509 ~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~ 543 (806)
T 1ypw_A 509 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 543 (806)
T ss_dssp CCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCC
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 45667999999999999999999999987666554
No 383
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.66 E-value=0.0088 Score=57.82 Aligned_cols=36 Identities=25% Similarity=0.393 Sum_probs=27.9
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc---C--CceEecCC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF---S--GEAINSNK 166 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l---~--~~VIS~Ds 166 (251)
.++++|+|+|++||||||++.+||..+ + ..++.+|.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~ 139 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT 139 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 346789999999999999999999654 2 45777775
No 384
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=95.65 E-value=0.0078 Score=47.13 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=21.9
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
...|+|.|++|+|||||..+|....
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 4679999999999999999998643
No 385
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.65 E-value=0.0054 Score=47.88 Aligned_cols=26 Identities=15% Similarity=0.367 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
+...|+|.|++|+|||||..+|....
T Consensus 14 ~~~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 14 TTLKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCC
Confidence 34689999999999999999998653
No 386
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=95.65 E-value=0.0054 Score=58.96 Aligned_cols=30 Identities=17% Similarity=0.363 Sum_probs=26.4
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..+++..++|.||+|||||||++.|+.-+.
T Consensus 365 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 365 KIPAGKTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp EECTTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhhccC
Confidence 447788999999999999999999987664
No 387
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=95.64 E-value=0.0067 Score=61.95 Aligned_cols=38 Identities=24% Similarity=0.249 Sum_probs=32.6
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKI 167 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~ 167 (251)
...++-+++.||+|+|||.+|+++|.+.+...++.+.-
T Consensus 508 ~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~ 545 (806)
T 3cf2_A 508 MTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGP 545 (806)
T ss_dssp CCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHH
T ss_pred CCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccc
Confidence 34566799999999999999999999999988877543
No 388
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=95.64 E-value=0.0075 Score=48.27 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=21.1
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
.+...|+|.|++|+|||||..++...
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34458899999999999999999864
No 389
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.63 E-value=0.008 Score=46.97 Aligned_cols=27 Identities=15% Similarity=0.239 Sum_probs=22.6
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.+...|+|.|++|+|||||..++....
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 345789999999999999999997643
No 390
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=95.63 E-value=0.0087 Score=47.39 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
.+...|+|.|++|+|||||..+|...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 44578999999999999999999765
No 391
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.62 E-value=0.0088 Score=53.13 Aligned_cols=28 Identities=21% Similarity=0.438 Sum_probs=24.5
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.+++.++.|.||+|+|||+|+..++...
T Consensus 104 l~~G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 104 IETRTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence 3667899999999999999999998753
No 392
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.62 E-value=0.011 Score=53.27 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=25.1
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
..+++.++.|.||+|+|||+||..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4577889999999999999999999875
No 393
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.61 E-value=0.0086 Score=47.65 Aligned_cols=26 Identities=15% Similarity=0.358 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
.....|+|.|++|+|||||..+|...
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 44578999999999999999999854
No 394
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.61 E-value=0.0089 Score=47.70 Aligned_cols=28 Identities=18% Similarity=0.134 Sum_probs=23.4
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..+...|+|.|++|+|||||..++....
T Consensus 17 ~~~~~ki~ivG~~~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 17 QGPELKVGIVGNLSSGKSALVHRYLTGT 44 (184)
T ss_dssp CCCEEEEEEECCTTSCHHHHHHHHHHSS
T ss_pred CCCeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3445789999999999999999987653
No 395
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.61 E-value=0.0077 Score=49.29 Aligned_cols=26 Identities=35% Similarity=0.354 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
.....|+|.|++|+|||||..+|...
T Consensus 26 ~~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 26 NVKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp -CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceeeEEEEECCCCCCHHHHHHHHhcC
Confidence 45578999999999999999999875
No 396
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=95.59 E-value=0.0091 Score=54.77 Aligned_cols=38 Identities=21% Similarity=0.388 Sum_probs=32.1
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhcCCceEecCCcceec
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHFSGEAINSNKIQVYK 171 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l~~~VIS~Ds~QvYk 171 (251)
++-++|.|+||+||||+|..|.+ .|..+++=|...+.+
T Consensus 147 g~gvli~G~sG~GKStlal~l~~-~G~~lv~DD~v~i~~ 184 (312)
T 1knx_A 147 GVGVLLTGRSGIGKSECALDLIN-KNHLFVGDDAIEIYR 184 (312)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHT-TTCEEEEEEEEEEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH-cCCEEEeCCEEEEEE
Confidence 56799999999999999999976 677888888777664
No 397
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.57 E-value=0.0073 Score=47.83 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.....|+|.|++|+|||||..+|....
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCC
Confidence 445689999999999999999998754
No 398
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.57 E-value=0.0043 Score=48.24 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=11.1
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
....|+|.|++|+|||||..+|...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEEECCCCC------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3467999999999999999999754
No 399
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.57 E-value=0.0091 Score=46.96 Aligned_cols=26 Identities=19% Similarity=0.484 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
.+...|+|.|++|+|||||..+|...
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999999853
No 400
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=95.56 E-value=0.0064 Score=58.73 Aligned_cols=27 Identities=30% Similarity=0.493 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.+..++|.||+|+||||+|+.|+..++
T Consensus 59 ~g~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 59 QKRHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhccCC
Confidence 346899999999999999999999875
No 401
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=95.54 E-value=0.011 Score=53.19 Aligned_cols=28 Identities=25% Similarity=0.536 Sum_probs=25.0
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
++.+-++|.||+|+|||.+|..||..++
T Consensus 102 ~~~n~~~l~GppgtGKt~~a~ala~~~~ 129 (267)
T 1u0j_A 102 GKRNTIWLFGPATTGKTNIAEAIAHTVP 129 (267)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHhhhc
Confidence 6567899999999999999999999754
No 402
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.54 E-value=0.0072 Score=56.17 Aligned_cols=35 Identities=23% Similarity=0.216 Sum_probs=27.2
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC--CceEec
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS--GEAINS 164 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~--~~VIS~ 164 (251)
.+++..++|.||+|+|||+||..++.+.+ ...++.
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 35667889999999999999999998633 234454
No 403
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.53 E-value=0.0077 Score=47.29 Aligned_cols=26 Identities=19% Similarity=0.480 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
.+...|+|.|++|+|||||..+|...
T Consensus 19 ~~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 19 SQEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp --CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred CceeEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999999864
No 404
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=95.52 E-value=0.0081 Score=47.75 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.+...|+|.|++|+|||||..+|....
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHCC
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcCC
Confidence 345689999999999999999998653
No 405
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.51 E-value=0.0081 Score=49.42 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
++...|+|.|++|+|||||..+|...
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 45678999999999999999999764
No 406
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.51 E-value=0.0085 Score=47.42 Aligned_cols=27 Identities=30% Similarity=0.313 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.+...|+|.|++|+|||||..++....
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcCC
Confidence 445789999999999999999998753
No 407
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.50 E-value=0.0086 Score=47.52 Aligned_cols=27 Identities=22% Similarity=0.322 Sum_probs=21.1
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
..+...|+|.|++|+|||||..++...
T Consensus 17 ~~~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 17 EGRGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHhC
Confidence 345678999999999999999999754
No 408
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.50 E-value=0.0083 Score=47.09 Aligned_cols=27 Identities=22% Similarity=0.224 Sum_probs=22.2
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
......|+|.|++|+|||||..+|...
T Consensus 14 ~~~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 14 SKTKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp --CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 355678999999999999999999754
No 409
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.49 E-value=0.0086 Score=46.51 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=20.4
Q ss_pred eEEEEEcCCccCHHHHHHHHHHh
Q 045245 134 KVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
..|+|.|++|+|||||..++...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCc
Confidence 36899999999999999999864
No 410
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.49 E-value=0.008 Score=52.78 Aligned_cols=26 Identities=19% Similarity=0.317 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
+++.++.|.||+|+|||+||..++..
T Consensus 96 ~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 96 ESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 66789999999999999999999864
No 411
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.48 E-value=0.011 Score=47.50 Aligned_cols=26 Identities=27% Similarity=0.224 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
.+...|+|.|++|+|||||..++...
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 34568999999999999999999864
No 412
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.47 E-value=0.0096 Score=47.36 Aligned_cols=27 Identities=15% Similarity=0.300 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.+...|+|.|++|+|||||..++....
T Consensus 19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 19 PLEVNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CceEEEEEECCCCCcHHHHHHHHHhCC
Confidence 444689999999999999999998643
No 413
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.46 E-value=0.0069 Score=53.49 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.+.+++|.||+|+|||||.+.|+....
T Consensus 168 ~geiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 168 KGKISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred cCCeEEEECCCCCcHHHHHHHhccccc
Confidence 457899999999999999999987553
No 414
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.46 E-value=0.0089 Score=47.51 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=21.8
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
...|+|.|++|+|||||..+|....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 4679999999999999999997643
No 415
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.45 E-value=0.0084 Score=54.69 Aligned_cols=27 Identities=19% Similarity=0.471 Sum_probs=23.7
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
.+++.++.|.||+|+||||||..++..
T Consensus 58 l~~G~iv~I~G~pGsGKTtLal~la~~ 84 (349)
T 2zr9_A 58 LPRGRVIEIYGPESSGKTTVALHAVAN 84 (349)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 356789999999999999999999864
No 416
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.45 E-value=0.0084 Score=55.48 Aligned_cols=28 Identities=21% Similarity=0.485 Sum_probs=24.6
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.+++.++.|.||+|+|||||+..++...
T Consensus 58 i~~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 58 YPRGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4667899999999999999999998764
No 417
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=95.42 E-value=0.007 Score=58.24 Aligned_cols=25 Identities=24% Similarity=0.499 Sum_probs=23.1
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++|.||||+|||++|+.|++..+
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred CeeEeecCchHHHHHHHHHHHHHHh
Confidence 5799999999999999999999885
No 418
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.42 E-value=0.0057 Score=58.95 Aligned_cols=30 Identities=17% Similarity=0.273 Sum_probs=26.5
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..+++..++|.||+|||||||.+.|+.-+.
T Consensus 366 ~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 366 SIPSGSVTALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp EECTTCEEEEECCTTSSSTHHHHHHTTSSC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 457789999999999999999999988664
No 419
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.41 E-value=0.0082 Score=48.28 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=22.0
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
.+...|+|.|++|+|||||..+|...
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 23 DFLFKFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp CEEEEEEEEESTTSSHHHHHHHHHC-
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC
Confidence 44578999999999999999999753
No 420
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.40 E-value=0.0062 Score=58.93 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=26.5
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..+++..++|.||+|||||||++.|+.-+.
T Consensus 377 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 377 HIKPGQKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp ECCTTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 457789999999999999999999987664
No 421
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=95.40 E-value=0.011 Score=46.64 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
+...|+|.|++|+|||||..+|...
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 4468999999999999999999754
No 422
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=95.39 E-value=0.013 Score=50.75 Aligned_cols=37 Identities=14% Similarity=0.238 Sum_probs=29.1
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcC---CceEec-CCc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFS---GEAINS-NKI 167 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~---~~VIS~-Ds~ 167 (251)
..+++|+|+|.+||||+++|..+.+.++ ..+++. |.+
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~i 49 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPL 49 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHH
Confidence 4567999999999999999999988785 445554 443
No 423
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=95.37 E-value=0.011 Score=47.82 Aligned_cols=25 Identities=28% Similarity=0.278 Sum_probs=21.4
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHH
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAI 155 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk 155 (251)
.+...|+|.|++|+|||||..++..
T Consensus 23 ~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 23 KKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp TCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhc
Confidence 3446789999999999999999975
No 424
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=95.37 E-value=0.011 Score=46.86 Aligned_cols=26 Identities=19% Similarity=0.206 Sum_probs=22.2
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
....|+|.|++|+|||||..+|....
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSC
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCC
Confidence 34679999999999999999998643
No 425
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.37 E-value=0.0079 Score=48.58 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=21.1
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHH
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAI 155 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk 155 (251)
.....|+|.|++|+|||||..++..
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCC
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHh
Confidence 3446899999999999999999964
No 426
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=95.36 E-value=0.01 Score=54.01 Aligned_cols=23 Identities=22% Similarity=0.374 Sum_probs=19.9
Q ss_pred eEEEEEcCCccCHHHHHHHHHHh
Q 045245 134 KVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
.+.+|+||+|||||||..+|.-.
T Consensus 24 g~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 24 GITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 47889999999999999888633
No 427
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.35 E-value=0.011 Score=46.87 Aligned_cols=26 Identities=19% Similarity=0.224 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
.+...|+|.|++|+|||||..+|...
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcC
Confidence 34567999999999999999999864
No 428
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.34 E-value=0.012 Score=55.60 Aligned_cols=36 Identities=19% Similarity=0.230 Sum_probs=28.8
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc----C--CceEecCC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF----S--GEAINSNK 166 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l----~--~~VIS~Ds 166 (251)
.++++|+++|++|+||||++..||..+ + ..++.+|.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 356889999999999999999998544 3 45777785
No 429
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.34 E-value=0.012 Score=52.35 Aligned_cols=27 Identities=19% Similarity=0.479 Sum_probs=23.9
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
.+++.+++|.|+||+|||+||..++..
T Consensus 65 l~~G~l~li~G~pG~GKTtl~l~ia~~ 91 (315)
T 3bh0_A 65 YKRRNFVLIAARPSMGKTAFALKQAKN 91 (315)
T ss_dssp BCTTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 466789999999999999999999865
No 430
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=95.33 E-value=0.0093 Score=55.84 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHH
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAI 155 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk 155 (251)
...++++|+||.|+||||||..++.
T Consensus 145 ~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 145 GEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp TSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCCceEEEEcCCCCCHHHHHHHHHh
Confidence 4568999999999999999999864
No 431
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.33 E-value=0.011 Score=46.60 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=21.9
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
...|+|.|++|+|||||..+|...-
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC
Confidence 4689999999999999999998643
No 432
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.31 E-value=0.011 Score=47.64 Aligned_cols=26 Identities=35% Similarity=0.336 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
+...|+|.|++|+|||||..+|....
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcCC
Confidence 34689999999999999999998643
No 433
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.31 E-value=0.011 Score=49.64 Aligned_cols=27 Identities=19% Similarity=0.270 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.+...|+|+|++|+|||||..+|....
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCC
Confidence 345789999999999999999998543
No 434
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=95.29 E-value=0.01 Score=57.15 Aligned_cols=28 Identities=29% Similarity=0.296 Sum_probs=25.0
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..++.+++|+||+|||||||.+.|+-.+
T Consensus 44 i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 44 VKEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3677899999999999999999998755
No 435
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.28 E-value=0.013 Score=46.94 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHH
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAI 155 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk 155 (251)
.+...|+|.|++|+|||||..++..
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 4457899999999999999999964
No 436
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=95.27 E-value=0.01 Score=55.07 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
++.+++|+||+|+|||||.+.|+....
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCCEEEEECCCCccHHHHHHHHhcccc
Confidence 457899999999999999999987554
No 437
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=95.27 E-value=0.0052 Score=59.13 Aligned_cols=30 Identities=20% Similarity=0.320 Sum_probs=26.3
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..+++..++|.||+|||||||++.|+.-+.
T Consensus 363 ~i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 363 SIEKGETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp EECTTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred EECCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 457789999999999999999999987664
No 438
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.24 E-value=0.0096 Score=55.68 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=22.3
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHH
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLA 154 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LA 154 (251)
.+++.++.|.||+|+|||||+..|+
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la 199 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLA 199 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHH
Confidence 4667899999999999999999876
No 439
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.23 E-value=0.011 Score=47.03 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
....|+|.|++|+|||||..+|...
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC-
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999753
No 440
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.22 E-value=0.0091 Score=47.09 Aligned_cols=25 Identities=32% Similarity=0.266 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
+...|+|.|++|+|||||..+|...
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999999865
No 441
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.22 E-value=0.0098 Score=53.11 Aligned_cols=34 Identities=24% Similarity=0.370 Sum_probs=27.6
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhc---C--CceEecCC
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHF---S--GEAINSNK 166 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l---~--~~VIS~Ds 166 (251)
+.+++++|++|+||||++..||..+ + ..++.+|.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 6799999999999999999999765 3 34666664
No 442
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.21 E-value=0.012 Score=47.18 Aligned_cols=26 Identities=31% Similarity=0.349 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
....|+|.|++|+|||||..++....
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCc
Confidence 44689999999999999999998743
No 443
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=95.19 E-value=0.014 Score=48.64 Aligned_cols=26 Identities=19% Similarity=0.452 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.+.+.+|+||+|+||||+..+|.-.+
T Consensus 22 ~~~~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 22 KEGINLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999886444
No 444
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.17 E-value=0.011 Score=47.19 Aligned_cols=29 Identities=21% Similarity=0.311 Sum_probs=22.5
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..+...|+|.|++|+|||||.+.+..++.
T Consensus 17 ~~~~~ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 17 QGSKPRILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp ---CCEEEEEESTTSSHHHHHHHHHSCCC
T ss_pred cCcceEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34557899999999999999998877553
No 445
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=95.16 E-value=0.0069 Score=58.55 Aligned_cols=30 Identities=23% Similarity=0.311 Sum_probs=26.4
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..+++..++|+||+|||||||++.|+.-+.
T Consensus 365 ~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 365 SVKPGSLVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp EECTTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 447789999999999999999999988664
No 446
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.15 E-value=0.011 Score=46.49 Aligned_cols=25 Identities=28% Similarity=0.502 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHH
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAI 155 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk 155 (251)
.+...|+|.|++|+|||||..++..
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHc
Confidence 3457899999999999999999853
No 447
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.11 E-value=0.014 Score=47.56 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
.+...|+|.|++|+|||||..+|...
T Consensus 32 ~~~~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 32 VRSVKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHC-
T ss_pred cceEEEEEECcCCCCHHHHHHHHHcC
Confidence 34568999999999999999999753
No 448
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=95.10 E-value=0.011 Score=56.16 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=23.5
Q ss_pred cCCCCeE--EEEEcCCccCHHHHHHHHHHh
Q 045245 129 NFNKKKV--VFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 129 ~~~k~ki--IvIsGpTGSGKTTLA~~LAk~ 156 (251)
..+++.+ ++|+||+|+|||||.+.|+..
T Consensus 36 ~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 36 SVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp SCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred EecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 4466777 999999999999999999865
No 449
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.09 E-value=0.014 Score=54.32 Aligned_cols=29 Identities=21% Similarity=0.509 Sum_probs=25.3
Q ss_pred ccCCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 128 MNFNKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 128 ~~~~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
...+++.+++|.|+||+|||||+..++..
T Consensus 198 gGl~~G~liiI~G~pG~GKTtl~l~ia~~ 226 (454)
T 2r6a_A 198 SGFQRSDLIIVAARPSVGKTAFALNIAQN 226 (454)
T ss_dssp SSBCTTCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 35677889999999999999999998764
No 450
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.08 E-value=0.014 Score=48.90 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=17.6
Q ss_pred CCeEEEEEcCCccCHHHHHHHH
Q 045245 132 KKKVVFVMGATATGKTKLSIDL 153 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~L 153 (251)
+++.+++.||||||||++...+
T Consensus 75 ~g~~~~i~g~TGsGKTt~~~~~ 96 (235)
T 3llm_A 75 QNSVVIIRGATGCGKTTQVPQF 96 (235)
T ss_dssp HCSEEEEECCTTSSHHHHHHHH
T ss_pred cCCEEEEEeCCCCCcHHhHHHH
Confidence 3578999999999999865443
No 451
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.08 E-value=0.013 Score=53.83 Aligned_cols=27 Identities=22% Similarity=0.460 Sum_probs=23.8
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
.+++.+++|.|++|+||||||..++..
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 356789999999999999999999865
No 452
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.05 E-value=0.012 Score=46.40 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.+...|+|.|++|+|||||..+|....
T Consensus 19 ~~~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 19 SKEVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp --CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCC
Confidence 445789999999999999999997654
No 453
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.04 E-value=0.079 Score=46.62 Aligned_cols=27 Identities=15% Similarity=0.086 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..+.+.+|+||-||||||.+.+++.++
T Consensus 26 ~~G~I~vitG~M~sGKTT~Llr~~~r~ 52 (219)
T 3e2i_A 26 HSGWIECITGSMFSGKSEELIRRLRRG 52 (219)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 557899999999999999776666654
No 454
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.04 E-value=0.014 Score=47.61 Aligned_cols=26 Identities=15% Similarity=0.211 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
....|+|.|++|+|||||..+|....
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCC
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCC
Confidence 34679999999999999999998643
No 455
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.02 E-value=0.012 Score=56.91 Aligned_cols=27 Identities=26% Similarity=0.311 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.++.+++|.||+|||||||.+.|+-.+
T Consensus 23 ~~Gei~gLiGpNGaGKSTLlkiL~Gl~ 49 (538)
T 3ozx_A 23 KNNTILGVLGKNGVGKTTVLKILAGEI 49 (538)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 566899999999999999999998755
No 456
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=95.01 E-value=0.016 Score=51.81 Aligned_cols=25 Identities=20% Similarity=0.421 Sum_probs=21.2
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHH
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAI 155 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk 155 (251)
..+.+.+|+||+|+|||+|..++.-
T Consensus 21 f~~~~~~i~G~NGsGKS~lleAi~~ 45 (339)
T 3qkt_A 21 FKEGINLIIGQNGSGKSSLLDAILV 45 (339)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHH
Confidence 4457889999999999999998743
No 457
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.00 E-value=0.017 Score=46.67 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
.+...|+|.|++|+|||||..++...
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 34578999999999999999999864
No 458
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.97 E-value=0.016 Score=47.33 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
....|+|.|++|+|||||..+|...
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3468999999999999999999864
No 459
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.96 E-value=0.013 Score=55.55 Aligned_cols=25 Identities=32% Similarity=0.494 Sum_probs=22.1
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHH
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDL 153 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~L 153 (251)
..+++.+++|.||+|||||||++.+
T Consensus 35 ~i~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 35 GLPIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHH
Confidence 3467889999999999999999994
No 460
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.95 E-value=0.014 Score=57.40 Aligned_cols=27 Identities=22% Similarity=0.165 Sum_probs=24.5
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.++.+++|.||+|+|||||.+.|+-.+
T Consensus 101 ~~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 101 RPGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhcCC
Confidence 677899999999999999999998755
No 461
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.94 E-value=0.016 Score=46.62 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
.....|+|.|++|+|||||..+|...
T Consensus 23 ~~~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 23 DYLIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp SEEEEEEEESCTTSSHHHHHHHHHCS
T ss_pred ceeEEEEEECcCCCCHHHHHHHHhcC
Confidence 34467999999999999999999864
No 462
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.93 E-value=0.015 Score=46.89 Aligned_cols=26 Identities=15% Similarity=0.166 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
.....|+|.|++|+|||||..+|...
T Consensus 27 ~~~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 27 DFLFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHhhC
Confidence 34467999999999999999999764
No 463
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=94.93 E-value=0.018 Score=48.71 Aligned_cols=23 Identities=17% Similarity=0.449 Sum_probs=20.0
Q ss_pred eEEEEEcCCccCHHHHHHHHHHh
Q 045245 134 KVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
.+++|.|++|||||++|..++..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 48899999999999999987544
No 464
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=94.93 E-value=0.011 Score=57.10 Aligned_cols=27 Identities=19% Similarity=0.330 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.++.+++|.||+|||||||++.|+-..
T Consensus 292 ~~Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 292 KEGEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 567899999999999999999998755
No 465
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=94.91 E-value=0.0073 Score=54.76 Aligned_cols=26 Identities=19% Similarity=0.348 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
++.+++|+||+|+|||||.+.|+...
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~~ 197 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPEL 197 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHhcccc
Confidence 45799999999999999999997654
No 466
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=94.91 E-value=0.021 Score=52.23 Aligned_cols=31 Identities=13% Similarity=0.081 Sum_probs=27.2
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSG 159 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~ 159 (251)
...++.++.|.||+|+|||||.+.|+.....
T Consensus 67 ~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~ 97 (347)
T 2obl_A 67 TCGIGQRIGIFAGSGVGKSTLLGMICNGASA 97 (347)
T ss_dssp CEETTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred eecCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 3467789999999999999999999998764
No 467
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.91 E-value=0.017 Score=48.27 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=21.7
Q ss_pred EEEEEcCCccCHHHHHHHHHHhcC
Q 045245 135 VVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 135 iIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
.|+|.|+-||||||.++.|++.+.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~ 25 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999998873
No 468
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.90 E-value=0.02 Score=46.10 Aligned_cols=24 Identities=25% Similarity=0.231 Sum_probs=21.3
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHh
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
...|+|.|.+|+|||||..++...
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999999854
No 469
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.89 E-value=0.017 Score=54.68 Aligned_cols=36 Identities=19% Similarity=0.407 Sum_probs=28.3
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhcC-----CceEecCCc
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHFS-----GEAINSNKI 167 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l~-----~~VIS~Ds~ 167 (251)
++.+++|+|++|+||||++..||..+. ..++.+|..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~ 137 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQ 137 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeecccc
Confidence 567899999999999999999997652 246666643
No 470
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.88 E-value=0.016 Score=54.63 Aligned_cols=26 Identities=27% Similarity=0.123 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
+...++|.||+|+|||||.+.|+...
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 44599999999999999999998744
No 471
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=94.86 E-value=0.019 Score=51.75 Aligned_cols=35 Identities=11% Similarity=0.057 Sum_probs=26.6
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhc---CCceEecCCc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHF---SGEAINSNKI 167 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l---~~~VIS~Ds~ 167 (251)
..-++|.||||||||++++.|+... +..++-.|.-
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~ 72 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPE 72 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 3467899999999999999997653 4555556653
No 472
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=94.86 E-value=0.014 Score=56.14 Aligned_cols=27 Identities=30% Similarity=0.269 Sum_probs=24.3
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.++.+++|.||+|||||||++.|+-.+
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999999998755
No 473
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=94.85 E-value=0.02 Score=54.28 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHH
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAI 155 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk 155 (251)
...++|.|+|+.|+||||||+.++.
T Consensus 150 ~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 150 LDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 4568999999999999999999996
No 474
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=94.81 E-value=0.021 Score=53.90 Aligned_cols=31 Identities=13% Similarity=0.084 Sum_probs=27.3
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhcCC
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHFSG 159 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~~ 159 (251)
...++.++.|.||+|+|||||.+.|+.....
T Consensus 153 ~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~ 183 (438)
T 2dpy_A 153 TVGRGQRMGLFAGSGVGKSVLLGMMARYTRA 183 (438)
T ss_dssp CCBTTCEEEEEECTTSSHHHHHHHHHHHSCC
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 4577889999999999999999999998753
No 475
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=94.80 E-value=0.0079 Score=54.05 Aligned_cols=28 Identities=18% Similarity=0.268 Sum_probs=23.4
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..++ +++|+||+|||||||...|.--++
T Consensus 58 ~~~G-~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 58 LGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp CCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 3555 999999999999999999865554
No 476
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.78 E-value=0.014 Score=57.26 Aligned_cols=28 Identities=32% Similarity=0.299 Sum_probs=24.8
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..++.+++|.||+|||||||.+.|+-.+
T Consensus 114 i~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 114 VKDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 3677899999999999999999998755
No 477
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.77 E-value=0.017 Score=49.31 Aligned_cols=27 Identities=15% Similarity=0.254 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.+...|+|+|.||+|||||...|...-
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSC
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCC
Confidence 345789999999999999999997644
No 478
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=94.76 E-value=0.019 Score=51.84 Aligned_cols=25 Identities=20% Similarity=0.375 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHH
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAI 155 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk 155 (251)
+.+.+.+|+||||+|||+|..+|.=
T Consensus 23 f~~gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 23 FEKGIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHH
Confidence 4557999999999999999888864
No 479
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=94.74 E-value=0.025 Score=48.75 Aligned_cols=25 Identities=12% Similarity=0.280 Sum_probs=18.5
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHH
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAI 155 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk 155 (251)
...++.+|.||.||||||...+.+.
T Consensus 18 ~~g~l~fiyG~MgsGKTt~Ll~~i~ 42 (195)
T 1w4r_A 18 TRGQIQVILGPMFSGKSTELMRRVR 42 (195)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHH
Confidence 4568999999999999954444443
No 480
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=94.70 E-value=0.016 Score=56.83 Aligned_cols=27 Identities=30% Similarity=0.263 Sum_probs=24.2
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.++.+++|.||+|||||||.+.|+-.+
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 467899999999999999999998755
No 481
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=94.70 E-value=0.018 Score=55.48 Aligned_cols=26 Identities=15% Similarity=0.288 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
++ .+++|+||+|||||||.+.|+--+
T Consensus 28 ~~-e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 28 DE-LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp CS-SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cc-ceEEEECCCCCcHHHHHHHHhcCC
Confidence 45 799999999999999999998755
No 482
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.69 E-value=0.021 Score=52.94 Aligned_cols=29 Identities=17% Similarity=0.288 Sum_probs=25.1
Q ss_pred ccCCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 128 MNFNKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 128 ~~~~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
....++.+++|.|+||+|||+||..++..
T Consensus 195 gGl~~G~l~ii~G~pg~GKT~lal~ia~~ 223 (444)
T 2q6t_A 195 GTLGPGSLNIIAARPAMGKTAFALTIAQN 223 (444)
T ss_dssp CCCCTTCEEEEEECTTSCHHHHHHHHHHH
T ss_pred CCcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 34667889999999999999999998864
No 483
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=94.68 E-value=0.015 Score=51.53 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.5
Q ss_pred eEEEEEcCCccCHHHHHHHHHH
Q 045245 134 KVVFVMGATATGKTKLSIDLAI 155 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk 155 (251)
..|+|.||+|+|||||.+.|+.
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHhC
Confidence 4569999999999999999864
No 484
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=94.66 E-value=0.024 Score=46.40 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
.+...|+|.|++|+|||||..+|...
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcC
Confidence 44578999999999999999999764
No 485
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.62 E-value=0.018 Score=54.53 Aligned_cols=29 Identities=34% Similarity=0.457 Sum_probs=25.3
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..+++.+++|.||+|+|||||++.++...
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 55778899999999999999999998644
No 486
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=94.61 E-value=0.0063 Score=47.99 Aligned_cols=25 Identities=24% Similarity=0.264 Sum_probs=6.1
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
....|+|.|++|+|||||..+|...
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEEC-----------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 3468999999999999999999765
No 487
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=94.59 E-value=0.02 Score=56.33 Aligned_cols=25 Identities=36% Similarity=0.453 Sum_probs=22.3
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
+.+++|.||+|||||||++.|+-..
T Consensus 378 GEiv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 378 SEILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp TCEEEEESCTTSSHHHHHHHHHTSS
T ss_pred ceEEEEECCCCCcHHHHHHHHhcCC
Confidence 4679999999999999999998754
No 488
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.59 E-value=0.12 Score=45.52 Aligned_cols=27 Identities=26% Similarity=0.242 Sum_probs=22.9
Q ss_pred CCCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 130 FNKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 130 ~~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
.+.+-.|+|+|.+|+|||||..+|...
T Consensus 7 ~~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 7 HMKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CCEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 355568999999999999999999754
No 489
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=94.54 E-value=0.013 Score=53.95 Aligned_cols=28 Identities=25% Similarity=0.159 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
+..+.|+|.|+-||||||+++.|++.++
T Consensus 2 ~~~~fI~~EG~dGsGKTT~~~~La~~L~ 29 (331)
T 1e2k_A 2 PTLLRVYIDGPHGMGKTTTTQLLVALGS 29 (331)
T ss_dssp CEEEEEEECSCTTSSHHHHHHHHTC---
T ss_pred CccEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3457899999999999999999999875
No 490
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.54 E-value=0.028 Score=49.63 Aligned_cols=34 Identities=24% Similarity=0.089 Sum_probs=25.8
Q ss_pred CeEEEEEcCCccCHHHHHHHHHHhc---CC--ceEecCC
Q 045245 133 KKVVFVMGATATGKTKLSIDLAIHF---SG--EAINSNK 166 (251)
Q Consensus 133 ~kiIvIsGpTGSGKTTLA~~LAk~l---~~--~VIS~Ds 166 (251)
...|++.|++|+||||++..+|..+ |. .++.+|.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 3568999999999999999988764 32 3556664
No 491
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=94.53 E-value=0.038 Score=51.32 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 132 KKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 132 k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
+.+.|+|+|.+|+|||||..+|....
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~ 47 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGER 47 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEE
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34689999999999999999997643
No 492
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=94.52 E-value=0.023 Score=52.17 Aligned_cols=28 Identities=11% Similarity=0.353 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
..+.+.+|.||+|+|||||..++.--++
T Consensus 24 ~~~~~~~i~G~nG~GKstll~ai~~~~~ 51 (430)
T 1w1w_A 24 GESNFTSIIGPNGSGKSNMMDAISFVLG 51 (430)
T ss_dssp TTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 3457999999999999999999976554
No 493
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=94.47 E-value=0.017 Score=61.16 Aligned_cols=31 Identities=19% Similarity=0.336 Sum_probs=27.5
Q ss_pred ccCCCCeEEEEEcCCccCHHHHHHHHHHhcC
Q 045245 128 MNFNKKKVVFVMGATATGKTKLSIDLAIHFS 158 (251)
Q Consensus 128 ~~~~k~kiIvIsGpTGSGKTTLA~~LAk~l~ 158 (251)
-..+++..++|+||||||||||++.|...+.
T Consensus 439 l~i~~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 439 LRVNAGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp EEECTTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred EeecCCcEEEEEecCCCcHHHHHHHhccccc
Confidence 3457889999999999999999999998775
No 494
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.43 E-value=0.019 Score=50.78 Aligned_cols=22 Identities=18% Similarity=0.418 Sum_probs=20.2
Q ss_pred eEEEEEcCCccCHHHHHHHHHH
Q 045245 134 KVVFVMGATATGKTKLSIDLAI 155 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk 155 (251)
.+.+|+||+|+|||+|..+|.-
T Consensus 25 g~~~i~G~NGsGKS~ll~ai~~ 46 (322)
T 1e69_A 25 RVTAIVGPNGSGKSNIIDAIKW 46 (322)
T ss_dssp SEEEEECCTTTCSTHHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHHH
Confidence 4899999999999999999984
No 495
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.41 E-value=0.028 Score=47.95 Aligned_cols=27 Identities=22% Similarity=0.222 Sum_probs=23.4
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.+...|+|.|.+|+|||||..+|...-
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 456789999999999999999998654
No 496
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.37 E-value=0.024 Score=52.28 Aligned_cols=27 Identities=19% Similarity=0.412 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
+++.+++|.||+|+|||+||..++...
T Consensus 72 ~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 72 PRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 566799999999999999999998653
No 497
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.33 E-value=0.029 Score=52.08 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=21.8
Q ss_pred eEEEEEcCCccCHHHHHHHHHHhc
Q 045245 134 KVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 134 kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
..++|.|++|||||+++..+++.+
T Consensus 46 ~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 46 HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 389999999999999999998766
No 498
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.32 E-value=0.03 Score=47.86 Aligned_cols=27 Identities=19% Similarity=0.206 Sum_probs=23.1
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHhc
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIHF 157 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~l 157 (251)
.+...|+++|.+|+|||||...|....
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 456789999999999999999998643
No 499
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=94.25 E-value=0.026 Score=49.80 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCccCHHHHHHHHHHh
Q 045245 131 NKKKVVFVMGATATGKTKLSIDLAIH 156 (251)
Q Consensus 131 ~k~kiIvIsGpTGSGKTTLA~~LAk~ 156 (251)
.+...|+|+|++|+|||||..+|...
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCC
Confidence 34457999999999999999999864
No 500
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=94.17 E-value=0.015 Score=56.72 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=21.3
Q ss_pred cCCCCeEEEEEcCCccCHHHHHHHH
Q 045245 129 NFNKKKVVFVMGATATGKTKLSIDL 153 (251)
Q Consensus 129 ~~~k~kiIvIsGpTGSGKTTLA~~L 153 (251)
..+++.+++|+||+|||||||++.+
T Consensus 344 ~I~~Ge~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 344 KIPLGTFVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp EEETTSEEEEECSTTSSHHHHHTTT
T ss_pred EecCCCEEEEEeeCCCCHHHHHHHH
Confidence 4467789999999999999999654
Done!