BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045247
(121 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TL8|A Chain A, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|D Chain D, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|G Chain G, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
pdb|3TL8|H Chain H, The Avrptob-Bak1 Complex Reveals Two Structurally Similar
Kinaseinteracting Domains In A Single Type Iii Effector
Length = 349
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 49/94 (52%), Gaps = 9/94 (9%)
Query: 26 FSAKELEIATNNYDEREVIKQCDFYITKLYKGFWQE-RLISVLKFDESLPDS---VYKYS 81
FS +EL++A++N+ + ++ + F K+YKG + L++V + E ++
Sbjct: 28 FSLRELQVASDNFSNKNILGRGGF--GKVYKGRLADGTLVAVKRLKEERXQGGELQFQTE 85
Query: 82 INNIVYAAQMDHKHILKLIGCCLETPIPILVFEY 115
+ I A H+++L+L G C+ +LV+ Y
Sbjct: 86 VEMISMAV---HRNLLRLRGFCMTPTERLLVYPY 116
>pdb|3UIM|A Chain A, Structural Basis For The Impact Of Phosphorylation On
Plant Receptor- Like Kinase Bak1 Activation
pdb|3ULZ|A Chain A, Crystal Structure Of Apo Bak1
Length = 326
Score = 35.4 bits (80), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 49/94 (52%), Gaps = 9/94 (9%)
Query: 26 FSAKELEIATNNYDEREVIKQCDFYITKLYKGFWQE-RLISVLKFDESLPDS---VYKYS 81
FS +EL++A++N+ + ++ + F K+YKG + L++V + E ++
Sbjct: 20 FSLRELQVASDNFXNKNILGRGGF--GKVYKGRLADGXLVAVKRLKEERTQGGELQFQTE 77
Query: 82 INNIVYAAQMDHKHILKLIGCCLETPIPILVFEY 115
+ I A H+++L+L G C+ +LV+ Y
Sbjct: 78 VEMISMAV---HRNLLRLRGFCMTPTERLLVYPY 108
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 33.9 bits (76), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 30 ELEIATNNYDEREVIKQCDFYITKLYKGFWQERLISVLKFDESLPDSVYKYSINNIVYAA 89
+LE ATNN+D + +I F K+YKG ++ LK + I +
Sbjct: 33 DLEEATNNFDHKFLIGHGVF--GKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLS 90
Query: 90 QMDHKHILKLIGCCLETPIPILVFEYGEYRTL 121
H H++ LIG C E IL+++Y E L
Sbjct: 91 FCRHPHLVSLIGFCDERNEMILIYKYMENGNL 122
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 42/92 (45%), Gaps = 2/92 (2%)
Query: 30 ELEIATNNYDEREVIKQCDFYITKLYKGFWQERLISVLKFDESLPDSVYKYSINNIVYAA 89
+LE ATNN+D + +I F K+YKG ++ LK + I +
Sbjct: 33 DLEEATNNFDHKFLIGHGVF--GKVYKGVLRDGAKVALKRRTPESSQGIEEFETEIETLS 90
Query: 90 QMDHKHILKLIGCCLETPIPILVFEYGEYRTL 121
H H++ LIG C E IL+++Y E L
Sbjct: 91 FCRHPHLVSLIGFCDERNEMILIYKYMENGNL 122
>pdb|2J0K|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains.
pdb|2J0K|B Chain B, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains
Length = 656
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 75 DSVYKYSINNIVYAAQMDHKHILKLIGCCLETPIPILV--FEYGEYRTL 121
DSV + + + Q DH HI+KLIG E P+ I++ GE R+
Sbjct: 432 DSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIMELCTLGELRSF 480
>pdb|2J0J|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains
Length = 656
Score = 33.5 bits (75), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 75 DSVYKYSINNIVYAAQMDHKHILKLIGCCLETPIPILV--FEYGEYRTL 121
DSV + + + Q DH HI+KLIG E P+ I++ GE R+
Sbjct: 432 DSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIMELCTLGELRSF 480
>pdb|2J0L|A Chain A, Crystal Structure Of A The Active Conformation Of The
Kinase Domain Of Focal Adhesion Kinase With A
Phosphorylated Activation Loop
Length = 276
Score = 33.1 bits (74), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 75 DSVYKYSINNIVYAAQMDHKHILKLIGCCLETPIPILV--FEYGEYRTL 121
DSV + + + Q DH HI+KLIG E P+ I++ GE R+
Sbjct: 52 DSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIMELCTLGELRSF 100
>pdb|1MP8|A Chain A, Crystal Structure Of Focal Adhesion Kinase (Fak)
pdb|4I4F|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In
Complex With An Allosteric Binding Pyrazolobenzothiazine
Compound
Length = 281
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 75 DSVYKYSINNIVYAAQMDHKHILKLIGCCLETPIPILV--FEYGEYRTL 121
DSV + + + Q DH HI+KLIG E P+ I++ GE R+
Sbjct: 57 DSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIMELCTLGELRSF 105
>pdb|2JKK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
pdb|2JKO|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
Length = 276
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 75 DSVYKYSINNIVYAAQMDHKHILKLIGCCLETPIPILV--FEYGEYRTL 121
DSV + + + Q DH HI+KLIG E P+ I++ GE R+
Sbjct: 52 DSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIMELCTLGELRSF 100
>pdb|2ETM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain
Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative
pdb|2ETM|B Chain B, Crystal Structure Of Focal Adhesion Kinase Domain
Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative
pdb|2IJM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain With 2
Molecules In The Asymmetric Unit Complexed With Adp And
Atp
pdb|2IJM|B Chain B, Crystal Structure Of Focal Adhesion Kinase Domain With 2
Molecules In The Asymmetric Unit Complexed With Adp And
Atp
Length = 281
Score = 33.1 bits (74), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 75 DSVYKYSINNIVYAAQMDHKHILKLIGCCLETPIPILV--FEYGEYRTL 121
DSV + + + Q DH HI+KLIG E P+ I++ GE R+
Sbjct: 54 DSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIMELCTLGELRSF 102
>pdb|3PXK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Pyrrolo[2,3- D]thiazole
pdb|3PXK|B Chain B, Focal Adhesion Kinase Catalytic Domain In Complex With
Pyrrolo[2,3- D]thiazole
Length = 282
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 75 DSVYKYSINNIVYAAQMDHKHILKLIGCCLETPIPILV--FEYGEYRTL 121
DSV + + + Q DH HI+KLIG E P+ I++ GE R+
Sbjct: 55 DSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIMELCTLGELRSF 103
>pdb|3BZ3|A Chain A, Crystal Structure Analysis Of Focal Adhesion Kinase With A
Methanesulfonamide Diaminopyrimidine Inhibitor
Length = 276
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 75 DSVYKYSINNIVYAAQMDHKHILKLIGCCLETPIPILV--FEYGEYRTL 121
DSV + + + Q DH HI+KLIG E P+ I++ GE R+
Sbjct: 49 DSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIMELCTLGELRSF 97
>pdb|2JKM|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
Length = 276
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 75 DSVYKYSINNIVYAAQMDHKHILKLIGCCLETPIPILV--FEYGEYRTL 121
DSV + + + Q DH HI+KLIG E P+ I++ GE R+
Sbjct: 52 DSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIMELCTLGELRSF 100
>pdb|2J0M|B Chain B, Crystal Structure A Two-Chain Complex Between The Ferm And
Kinase Domains Of Focal Adhesion Kinase.
pdb|2JKQ|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
Length = 276
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 75 DSVYKYSINNIVYAAQMDHKHILKLIGCCLETPIPILV--FEYGEYRTL 121
DSV + + + Q DH HI+KLIG E P+ I++ GE R+
Sbjct: 52 DSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIMELCTLGELRSF 100
>pdb|4EBW|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In
Complex With Novel Allosteric Inhibitor
pdb|4EBV|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In
Complex With Novel Allosteric Inhibitor
Length = 304
Score = 33.1 bits (74), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 75 DSVYKYSINNIVYAAQMDHKHILKLIGCCLETPIPILV--FEYGEYRTL 121
DSV + + + Q DH HI+KLIG E P+ I++ GE R+
Sbjct: 80 DSVREKFLQEALTMRQFDHPHIVKLIGVITENPVWIIMELCTLGELRSF 128
>pdb|2IVS|A Chain A, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
pdb|2IVS|B Chain B, Crystal Structure Of Non-Phosphorylated Ret Tyrosine
Kinase Domain
Length = 314
Score = 32.0 bits (71), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 42 EVIKQCDFYITKLYKGFWQERLISVLKFDESLPDSVYKYSINNIVYAAQMDHKHILKLIG 101
+V+K F++ KG ++V E+ S + ++ Q++H H++KL G
Sbjct: 38 KVVKATAFHL----KGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYG 93
Query: 102 CCLETPIPILVFEYGEYRTL 121
C + +L+ EY +Y +L
Sbjct: 94 ACSQDGPLLLIVEYAKYGSL 113
>pdb|2IVT|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain
pdb|2IVU|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain Complexed With The Inhibitor Zd6474
pdb|2X2K|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2L|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
pdb|2X2M|B Chain B, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain With Inhibitor
Length = 314
Score = 32.0 bits (71), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 42 EVIKQCDFYITKLYKGFWQERLISVLKFDESLPDSVYKYSINNIVYAAQMDHKHILKLIG 101
+V+K F++ KG ++V E+ S + ++ Q++H H++KL G
Sbjct: 38 KVVKATAFHL----KGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYG 93
Query: 102 CCLETPIPILVFEYGEYRTL 121
C + +L+ EY +Y +L
Sbjct: 94 ACSQDGPLLLIVEYAKYGSL 113
>pdb|2IVV|A Chain A, Crystal Structure Of Phosphorylated Ret Tyrosine Kinase
Domain Complexed With The Inhibitor Pp1
Length = 314
Score = 32.0 bits (71), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 4/80 (5%)
Query: 42 EVIKQCDFYITKLYKGFWQERLISVLKFDESLPDSVYKYSINNIVYAAQMDHKHILKLIG 101
+V+K F++ KG ++V E+ S + ++ Q++H H++KL G
Sbjct: 38 KVVKATAFHL----KGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYG 93
Query: 102 CCLETPIPILVFEYGEYRTL 121
C + +L+ EY +Y +L
Sbjct: 94 ACSQDGPLLLIVEYAKYGSL 113
>pdb|4ASZ|A Chain A, Crystal Structure Of Apo Trkb Kinase Domain
pdb|4AT3|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Cpd5n
pdb|4AT4|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Ex429
pdb|4AT5|A Chain A, Crystal Structure Of Trkb Kinase Domain In Complex With
Gw2580
Length = 299
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 31/62 (50%)
Query: 60 QERLISVLKFDESLPDSVYKYSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEYGEYR 119
Q++++ +K + D+ K + H+HI+K G C+E I+VFEY ++
Sbjct: 41 QDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEGDPLIMVFEYMKHG 100
Query: 120 TL 121
L
Sbjct: 101 DL 102
>pdb|2R4B|A Chain A, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
Inhibitor
pdb|2R4B|B Chain B, Erbb4 Kinase Domain Complexed With A Thienopyrimidine
Inhibitor
Length = 321
Score = 29.6 bits (65), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 54 LYKGFWQER------LISVLKFDESLPDSVYKYSINNIVYAAQMDHKHILKLIGCCLETP 107
+YKG W +++ +E+ ++ + A MDH H+++L+G CL
Sbjct: 54 VYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSPT 113
Query: 108 I 108
I
Sbjct: 114 I 114
>pdb|3BBT|B Chain B, Crystal Structure Of The Erbb4 Kinase In Complex With
Lapatinib
pdb|3BBT|D Chain D, Crystal Structure Of The Erbb4 Kinase In Complex With
Lapatinib
pdb|3BBW|B Chain B, Crystal Structure Of The Erbb4 Kinase In Its Inactive
Conformation
pdb|3BBW|A Chain A, Crystal Structure Of The Erbb4 Kinase In Its Inactive
Conformation
pdb|3BCE|A Chain A, Crystal Structure Of The Erbb4 Kinase
pdb|3BCE|B Chain B, Crystal Structure Of The Erbb4 Kinase
pdb|3BCE|C Chain C, Crystal Structure Of The Erbb4 Kinase
Length = 328
Score = 29.6 bits (65), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Query: 54 LYKGFWQER------LISVLKFDESLPDSVYKYSINNIVYAAQMDHKHILKLIGCCLETP 107
+YKG W +++ +E+ ++ + A MDH H+++L+G CL
Sbjct: 31 VYKGIWVPEGETVKIPVAIKILNETTGPKANVEFMDEALIMASMDHPHLVRLLGVCLSPT 90
Query: 108 IPILV 112
I ++
Sbjct: 91 IQLVT 95
>pdb|3GOP|A Chain A, Crystal Structure Of The Egf Receptor Juxtamembrane And
Kinase Domains
Length = 361
Score = 29.6 bits (65), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 54 LYKGFW---QERL---ISVLKFDESLPDSVYKYSINNIVYAAQMDHKHILKLIGCCLETP 107
+YKG W E++ +++++ E+ K ++ A +D+ H+ +L+G CL +
Sbjct: 65 VYKGLWIPEGEKVKIPVAIMELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 124
Query: 108 IPILV 112
+ ++
Sbjct: 125 VQLIT 129
>pdb|4H1J|A Chain A, Crystal Structure Of Pyk2 With The Pyrazole 13a
pdb|4H1M|A Chain A, Crystal Structure Of Pyk2 With The Indole 10c
Length = 293
Score = 28.9 bits (63), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 82 INNIVYAAQMDHKHILKLIGCCLETPIPIL--VFEYGE 117
++ V +DH HI+KLIG E P I+ ++ YGE
Sbjct: 73 MSEAVIMKNLDHPHIVKLIGIIEEEPTWIIMELYPYGE 110
>pdb|3FZO|A Chain A, Crystal Structure Of Pyk2-Apo, Proline-Rich Tyrosine
Kinase
pdb|3FZP|A Chain A, Crystal Structure Of Pyk2 Complexed With Atpgs
pdb|3FZR|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-431396
pdb|3FZS|A Chain A, Crystal Structure Of Pyk2 Complexed With Birb796
pdb|3FZT|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-4618433
pdb|3H3C|A Chain A, Crystal Structure Of Pyk2 In Complex With Sulfoximine-
Substituted Trifluoromethylpyrimidine Analog
pdb|3ET7|A Chain A, Crystal Structure Of Pyk2 Complexed With Pf-2318841
Length = 277
Score = 28.9 bits (63), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 82 INNIVYAAQMDHKHILKLIGCCLETPIPIL--VFEYGE 117
++ V +DH HI+KLIG E P I+ ++ YGE
Sbjct: 57 MSEAVIMKNLDHPHIVKLIGIIEEEPTWIIMELYPYGE 94
>pdb|3CC6|A Chain A, Crystal Structure Of Kinase Domain Of Protein Tyrosine
Kinase 2 Beta (ptk2b)
Length = 281
Score = 28.5 bits (62), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 82 INNIVYAAQMDHKHILKLIGCCLETPIPIL--VFEYGE 117
++ V +DH HI+KLIG E P I+ ++ YGE
Sbjct: 61 MSEAVIMKNLDHPHIVKLIGIIEEEPTWIIMELYPYGE 98
>pdb|4AOJ|A Chain A, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|B Chain B, Human Trka In Complex With The Inhibitor Az-23
pdb|4AOJ|C Chain C, Human Trka In Complex With The Inhibitor Az-23
Length = 329
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 91 MDHKHILKLIGCCLETPIPILVFEY 115
+ H+HI++ G C E ++VFEY
Sbjct: 100 LQHQHIVRFFGVCTEGRPLLMVFEY 124
>pdb|4F0I|A Chain A, Crystal Structure Of Apo Trka
pdb|4F0I|B Chain B, Crystal Structure Of Apo Trka
Length = 300
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 91 MDHKHILKLIGCCLETPIPILVFEY 115
+ H+HI++ G C E ++VFEY
Sbjct: 71 LQHQHIVRFFGVCTEGRPLLMVFEY 95
>pdb|4I1Z|A Chain A, Crystal Structure Of The Monomeric (v948r) Form Of The
Gefitinib/erlotinib Resistant Egfr Kinase Domain
L858r+t790m
pdb|4I22|A Chain A, Structure Of The Monomeric (v948r)gefitinib/erlotinib
Resistant Double Mutant (l858r+t790m) Egfr Kinase Domain
Co-crystallized With Gefitinib
Length = 329
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 54 LYKGFW---QERL---ISVLKFDESLPDSVYKYSINNIVYAAQMDHKHILKLIGCCLETP 107
+YKG W E++ +++ + E+ K ++ A +D+ H+ +L+G CL +
Sbjct: 33 VYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 92
Query: 108 IPILV 112
+ +++
Sbjct: 93 VQLIM 97
>pdb|4I21|A Chain A, Crystal Structure Of L858r + T790m Egfr Kinase Domain In
Complex With Mig6 Peptide
pdb|4I21|B Chain B, Crystal Structure Of L858r + T790m Egfr Kinase Domain In
Complex With Mig6 Peptide
Length = 329
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 54 LYKGFW---QERL---ISVLKFDESLPDSVYKYSINNIVYAAQMDHKHILKLIGCCLETP 107
+YKG W E++ +++ + E+ K ++ A +D+ H+ +L+G CL +
Sbjct: 33 VYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 92
Query: 108 IPILV 112
+ +++
Sbjct: 93 VQLIM 97
>pdb|4GT5|A Chain A, Crystal Structure Of The Inactive Trka Kinase Domain
Length = 306
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 91 MDHKHILKLIGCCLETPIPILVFEY 115
+ H+HI++ G C E ++VFEY
Sbjct: 77 LQHQHIVRFFGVCTEGRPLLMVFEY 101
>pdb|3UG1|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN The Apo Form
pdb|3UG2|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN Complex With Gefitinib
pdb|3VJN|A Chain A, Crystal Structure Of The Mutated Egfr Kinase Domain
(G719sT790M) IN Complex With Amppnp
Length = 334
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 54 LYKGFW---QERL---ISVLKFDESLPDSVYKYSINNIVYAAQMDHKHILKLIGCCLETP 107
+YKG W E++ +++ + E+ K ++ A +D+ H+ +L+G CL +
Sbjct: 38 VYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 97
Query: 108 IPILV 112
+ +++
Sbjct: 98 VQLIM 102
>pdb|4G5P|A Chain A, Crystal Structure Of Egfr Kinase T790m In Complex With
Bibw2992
pdb|4G5P|B Chain B, Crystal Structure Of Egfr Kinase T790m In Complex With
Bibw2992
Length = 330
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 54 LYKGFW---QERL---ISVLKFDESLPDSVYKYSINNIVYAAQMDHKHILKLIGCCLETP 107
+YKG W E++ +++ + E+ K ++ A +D+ H+ +L+G CL +
Sbjct: 34 VYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 93
Query: 108 IPILV 112
+ +++
Sbjct: 94 VQLIM 98
>pdb|2JIT|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation
pdb|2JIT|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation
Length = 327
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 54 LYKGFW---QERL---ISVLKFDESLPDSVYKYSINNIVYAAQMDHKHILKLIGCCLETP 107
+YKG W E++ +++ + E+ K ++ A +D+ H+ +L+G CL +
Sbjct: 31 VYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 90
Query: 108 IPILV 112
+ +++
Sbjct: 91 VQLIM 95
>pdb|4I24|A Chain A, Structure Of T790m Egfr Kinase Domain Co-crystallized With
Dacomitinib
pdb|4I24|B Chain B, Structure Of T790m Egfr Kinase Domain Co-crystallized With
Dacomitinib
Length = 329
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 54 LYKGFW---QERL---ISVLKFDESLPDSVYKYSINNIVYAAQMDHKHILKLIGCCLETP 107
+YKG W E++ +++ + E+ K ++ A +D+ H+ +L+G CL +
Sbjct: 33 VYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 92
Query: 108 IPILV 112
+ +++
Sbjct: 93 VQLIM 97
>pdb|2JIV|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Compex With Hki-272
pdb|2JIV|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Compex With Hki-272
Length = 328
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 54 LYKGFW---QERL---ISVLKFDESLPDSVYKYSINNIVYAAQMDHKHILKLIGCCLETP 107
+YKG W E++ +++ + E+ K ++ A +D+ H+ +L+G CL +
Sbjct: 32 VYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 91
Query: 108 IPILV 112
+ +++
Sbjct: 92 VQLIM 96
>pdb|3IKA|A Chain A, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently
Binding To Wz4002
pdb|3IKA|B Chain B, Crystal Structure Of Egfr 696-1022 T790m Mutant Covalently
Binding To Wz4002
Length = 331
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 54 LYKGFW---QERL---ISVLKFDESLPDSVYKYSINNIVYAAQMDHKHILKLIGCCLETP 107
+YKG W E++ +++ + E+ K ++ A +D+ H+ +L+G CL +
Sbjct: 35 VYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 94
Query: 108 IPILV 112
+ +++
Sbjct: 95 VQLIM 99
>pdb|2EB3|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (L858r) In
Complex With Amppnp
Length = 334
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 54 LYKGFW---QERL---ISVLKFDESLPDSVYKYSINNIVYAAQMDHKHILKLIGCCLETP 107
+YKG W E++ +++ + E+ K ++ A +D+ H+ +L+G CL +
Sbjct: 38 VYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 97
Query: 108 IPILV 112
+ ++
Sbjct: 98 VQLIT 102
>pdb|2JIU|A Chain A, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Complex With Aee788
pdb|2JIU|B Chain B, Crystal Structure Of Egfr Kinase Domain T790m Mutation In
Complex With Aee788
Length = 328
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 54 LYKGFW---QERL---ISVLKFDESLPDSVYKYSINNIVYAAQMDHKHILKLIGCCLETP 107
+YKG W E++ +++ + E+ K ++ A +D+ H+ +L+G CL +
Sbjct: 32 VYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 91
Query: 108 IPILV 112
+ +++
Sbjct: 92 VQLIM 96
>pdb|3W2O|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Tak-285
pdb|3W2P|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Compound 2
pdb|3W2Q|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Hki-272
pdb|3W2R|A Chain A, Egfr Kinase Domain T790m/l858r Mutant With Compound 4
Length = 331
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 54 LYKGFW---QERL---ISVLKFDESLPDSVYKYSINNIVYAAQMDHKHILKLIGCCLETP 107
+YKG W E++ +++ + E+ K ++ A +D+ H+ +L+G CL +
Sbjct: 35 VYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 94
Query: 108 IPILV 112
+ +++
Sbjct: 95 VQLIM 99
>pdb|3VJO|A Chain A, Crystal Structure Of The Wild-Type Egfr Kinase Domain In
Complex With Amppnp
Length = 334
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 54 LYKGFW---QERL---ISVLKFDESLPDSVYKYSINNIVYAAQMDHKHILKLIGCCLETP 107
+YKG W E++ +++ + E+ K ++ A +D+ H+ +L+G CL +
Sbjct: 38 VYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 97
Query: 108 IPILV 112
+ ++
Sbjct: 98 VQLIT 102
>pdb|2EB2|A Chain A, Crystal Structure Of Mutated Egfr Kinase Domain (G719s)
Length = 334
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 54 LYKGFW---QERL---ISVLKFDESLPDSVYKYSINNIVYAAQMDHKHILKLIGCCLETP 107
+YKG W E++ +++ + E+ K ++ A +D+ H+ +L+G CL +
Sbjct: 38 VYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 97
Query: 108 IPILV 112
+ ++
Sbjct: 98 VQLIT 102
>pdb|4I20|A Chain A, Crystal Structure Of Monomeric (v948r) Primary Oncogenic
Mutant L858r Egfr Kinase Domain
Length = 329
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 54 LYKGFW---QERL---ISVLKFDESLPDSVYKYSINNIVYAAQMDHKHILKLIGCCLETP 107
+YKG W E++ +++ + E+ K ++ A +D+ H+ +L+G CL +
Sbjct: 33 VYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 92
Query: 108 IPILV 112
+ ++
Sbjct: 93 VQLIT 97
>pdb|3LZB|A Chain A, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|B Chain B, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|C Chain C, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|D Chain D, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|E Chain E, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|F Chain F, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|G Chain G, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
pdb|3LZB|H Chain H, Egfr Kinase Domain Complexed With An
Imidazo[2,1-B]thiazole Inhibitor
Length = 327
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 54 LYKGFW---QERL---ISVLKFDESLPDSVYKYSINNIVYAAQMDHKHILKLIGCCLETP 107
+YKG W E++ +++ + E+ K ++ A +D+ H+ +L+G CL +
Sbjct: 31 VYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 90
Query: 108 IPILV 112
+ ++
Sbjct: 91 VQLIT 95
>pdb|1M14|A Chain A, Tyrosine Kinase Domain From Epidermal Growth Factor
Receptor
pdb|1M17|A Chain A, Epidermal Growth Factor Receptor Tyrosine Kinase Domain
With 4-Anilinoquinazoline Inhibitor Erlotinib
Length = 333
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 54 LYKGFW---QERL---ISVLKFDESLPDSVYKYSINNIVYAAQMDHKHILKLIGCCLETP 107
+YKG W E++ +++ + E+ K ++ A +D+ H+ +L+G CL +
Sbjct: 37 VYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 96
Query: 108 IPILV 112
+ ++
Sbjct: 97 VQLIT 101
>pdb|4I23|A Chain A, Crystal Structure Of The Wild-type Egfr Kinase Domain In
Complex With Dacomitinib (soaked)
Length = 329
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 54 LYKGFW---QERL---ISVLKFDESLPDSVYKYSINNIVYAAQMDHKHILKLIGCCLETP 107
+YKG W E++ +++ + E+ K ++ A +D+ H+ +L+G CL +
Sbjct: 33 VYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 92
Query: 108 IPILV 112
+ ++
Sbjct: 93 VQLIT 97
>pdb|1XKK|A Chain A, Egfr Kinase Domain Complexed With A Quinazoline Inhibitor-
Gw572016
Length = 352
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 54 LYKGFW---QERL---ISVLKFDESLPDSVYKYSINNIVYAAQMDHKHILKLIGCCLETP 107
+YKG W E++ +++ + E+ K ++ A +D+ H+ +L+G CL +
Sbjct: 56 VYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 115
Query: 108 IPILV 112
+ ++
Sbjct: 116 VQLIT 120
>pdb|4HJO|A Chain A, Crystal Structure Of The Inactive Egfr Tyrosine Kinase
Domain With Erlotinib
Length = 337
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 54 LYKGFW---QERL---ISVLKFDESLPDSVYKYSINNIVYAAQMDHKHILKLIGCCLETP 107
+YKG W E++ +++ + E+ K ++ A +D+ H+ +L+G CL +
Sbjct: 41 VYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 100
Query: 108 IPILV 112
+ ++
Sbjct: 101 VQLIT 105
>pdb|2ITT|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Aee788
pdb|2ITU|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Afn941
pdb|2ITV|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Amp-pnp
pdb|2ITZ|A Chain A, Crystal Structure Of Egfr Kinase Domain L858r Mutation In
Complex With Iressa
Length = 327
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 54 LYKGFW---QERL---ISVLKFDESLPDSVYKYSINNIVYAAQMDHKHILKLIGCCLETP 107
+YKG W E++ +++ + E+ K ++ A +D+ H+ +L+G CL +
Sbjct: 31 VYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 90
Query: 108 IPILV 112
+ ++
Sbjct: 91 VQLIT 95
>pdb|2GS2|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain
pdb|2GS6|A Chain A, Crystal Structure Of The Active Egfr Kinase Domain In
Complex With An Atp Analog-Peptide Conjugate
pdb|2RF9|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RF9|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|3W2S|A Chain A, Egfr Kinase Domain With Compound4
Length = 330
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 54 LYKGFW---QERL---ISVLKFDESLPDSVYKYSINNIVYAAQMDHKHILKLIGCCLETP 107
+YKG W E++ +++ + E+ K ++ A +D+ H+ +L+G CL +
Sbjct: 34 VYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 93
Query: 108 IPILV 112
+ ++
Sbjct: 94 VQLIT 98
>pdb|2GS7|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|2GS7|B Chain B, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|A Chain A, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|B Chain B, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|C Chain C, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
pdb|3GT8|D Chain D, Crystal Structure Of The Inactive Egfr Kinase Domain In
Complex With Amp-Pnp
Length = 330
Score = 27.7 bits (60), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 54 LYKGFW---QERL---ISVLKFDESLPDSVYKYSINNIVYAAQMDHKHILKLIGCCLETP 107
+YKG W E++ +++ + E+ K ++ A +D+ H+ +L+G CL +
Sbjct: 34 VYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 93
Query: 108 IPILV 112
+ ++
Sbjct: 94 VQLIT 98
>pdb|2ITN|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Amp-Pnp
pdb|2ITO|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Iressa
pdb|2ITP|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Aee788
pdb|2ITQ|A Chain A, Crystal Structure Of Egfr Kinase Domain G719s Mutation In
Complex With Afn941
Length = 327
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 54 LYKGFW---QERL---ISVLKFDESLPDSVYKYSINNIVYAAQMDHKHILKLIGCCLETP 107
+YKG W E++ +++ + E+ K ++ A +D+ H+ +L+G CL +
Sbjct: 31 VYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 90
Query: 108 IPILV 112
+ ++
Sbjct: 91 VQLIT 95
>pdb|3BEL|A Chain A, X-Ray Structure Of Egfr In Complex With Oxime Inhibitor
pdb|2RGP|A Chain A, Structure Of Egfr In Complex With Hydrazone, A Potent Dual
Inhibitor
Length = 315
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 54 LYKGFW---QERL---ISVLKFDESLPDSVYKYSINNIVYAAQMDHKHILKLIGCCLETP 107
+YKG W E++ +++ + E+ K ++ A +D+ H+ +L+G CL +
Sbjct: 25 VYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 84
Query: 108 IPILV 112
+ ++
Sbjct: 85 VQLIT 89
>pdb|2J5F|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An
Irreversible Inhibitor 34-Jab
pdb|2ITW|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Afn941
pdb|2ITX|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Amp- Pnp
pdb|2ITY|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Iressa
pdb|2J6M|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With
Aee788
pdb|3POZ|A Chain A, Egfr Kinase Domain Complexed With Tak-285
Length = 327
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 54 LYKGFW---QERL---ISVLKFDESLPDSVYKYSINNIVYAAQMDHKHILKLIGCCLETP 107
+YKG W E++ +++ + E+ K ++ A +D+ H+ +L+G CL +
Sbjct: 31 VYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 90
Query: 108 IPILV 112
+ ++
Sbjct: 91 VQLIT 95
>pdb|4G5J|A Chain A, Crystal Structure Of Egfr Kinase In Complex With Bibw2992
Length = 330
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 54 LYKGFW---QERL---ISVLKFDESLPDSVYKYSINNIVYAAQMDHKHILKLIGCCLETP 107
+YKG W E++ +++ + E+ K ++ A +D+ H+ +L+G CL +
Sbjct: 34 VYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 93
Query: 108 IPILV 112
+ ++
Sbjct: 94 VQLIT 98
>pdb|2RFD|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFD|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|A Chain A, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|B Chain B, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|C Chain C, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
pdb|2RFE|D Chain D, Crystal Structure Of The Complex Between The Egfr Kinase
Domain And A Mig6 Peptide
Length = 324
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 54 LYKGFW---QERL---ISVLKFDESLPDSVYKYSINNIVYAAQMDHKHILKLIGCCLETP 107
+YKG W E++ +++ + E+ K ++ A +D+ H+ +L+G CL +
Sbjct: 28 VYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 87
Query: 108 IPILV 112
+ ++
Sbjct: 88 VQLIT 92
>pdb|2J5E|A Chain A, Crystal Structure Of Egfr Kinase Domain In Complex With An
Irreversible Inhibitor 13-Jab
Length = 327
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 54 LYKGFW---QERL---ISVLKFDESLPDSVYKYSINNIVYAAQMDHKHILKLIGCCLETP 107
+YKG W E++ +++ + E+ K ++ A +D+ H+ +L+G CL +
Sbjct: 31 VYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLTST 90
Query: 108 IPILV 112
+ ++
Sbjct: 91 VQLIT 95
>pdb|3V5Q|A Chain A, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
pdb|3V5Q|B Chain B, Discovery Of A Selective Trk Inhibitor With Efficacy In
Rodent Cancer Tumor Models
Length = 297
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 19/31 (61%)
Query: 91 MDHKHILKLIGCCLETPIPILVFEYGEYRTL 121
+ H+HI+K G C + I+VFEY ++ L
Sbjct: 74 LQHEHIVKFYGVCGDGDPLIMVFEYMKHGDL 104
>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MIY|B Chain B, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MJ1|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Ro5191614
pdb|3MJ2|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Bms-509744
Length = 266
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 90 QMDHKHILKLIGCCLETPIPILVFEYGEYRTL 121
++ H +++L G CLE LVFE+ E+ L
Sbjct: 58 KLSHPKLVQLYGVCLEQAPICLVFEFMEHGCL 89
>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5J|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5L|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|C Chain C, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|D Chain D, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V8T|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8T|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8W|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
pdb|3V8W|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
Length = 266
Score = 27.3 bits (59), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 90 QMDHKHILKLIGCCLETPIPILVFEYGEYRTL 121
++ H +++L G CLE LVFE+ E+ L
Sbjct: 58 KLSHPKLVQLYGVCLEQAPICLVFEFMEHGCL 89
>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SM2|B Chain B, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|A Chain A, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|B Chain B, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNX|A Chain A, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
pdb|1SNX|B Chain B, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
Length = 264
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 90 QMDHKHILKLIGCCLETPIPILVFEYGEYRTL 121
++ H +++L G CLE LVFE+ E+ L
Sbjct: 56 KLSHPKLVQLYGVCLEQAPICLVFEFMEHGCL 87
>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52
pdb|4HCU|A Chain A, Crystal Structure Of Itk In Complext With Compound 40
pdb|4HCV|A Chain A, Crystal Structure Of Itk In Complex With Compound 53
Length = 269
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 90 QMDHKHILKLIGCCLETPIPILVFEYGEYRTL 121
++ H +++L G CLE LVFE+ E+ L
Sbjct: 61 KLSHPKLVQLYGVCLEQAPICLVFEFMEHGCL 92
>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor
pdb|3QGW|B Chain B, Crystal Structure Of Itk Kinase Bound To An Inhibitor
pdb|3QGY|A Chain A, Crystal Structure Of Itk Inhibitor Complex
pdb|3QGY|B Chain B, Crystal Structure Of Itk Inhibitor Complex
Length = 286
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 90 QMDHKHILKLIGCCLETPIPILVFEYGEYRTL 121
++ H +++L G CLE LVFE+ E+ L
Sbjct: 78 KLSHPKLVQLYGVCLEQAPICLVFEFMEHGCL 109
>pdb|2O8Y|A Chain A, Apo Irak4 Kinase Domain
pdb|2O8Y|B Chain B, Apo Irak4 Kinase Domain
Length = 298
Score = 26.9 bits (58), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Query: 23 YRIFSAKELEIATNNYDEREVI----KQCDFYITKLYKGFWQERLISVLKFDESL---PD 75
+ FS EL+ TNN+DER + K + +YKG+ ++V K + +
Sbjct: 3 FHSFSFYELKNVTNNFDERPISVGGNKXGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTE 62
Query: 76 SVYKYSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY 115
+ + I A+ H+++++L+G + LV+ Y
Sbjct: 63 ELKQQFDQEIKVXAKCQHENLVELLGFSSDGDDLCLVYVY 102
>pdb|2OIB|A Chain A, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|B Chain B, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|C Chain C, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIB|D Chain D, Crystal Structure Of Irak4 Kinase Domain Apo Form
pdb|2OIC|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OIC|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Staurosporine
pdb|2OID|A Chain A, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|B Chain B, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|C Chain C, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
pdb|2OID|D Chain D, Crystal Structure Of Irak4 Kinase Domain Complexed With
Amppnp
Length = 301
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Query: 23 YRIFSAKELEIATNNYDEREVI----KQCDFYITKLYKGFWQERLISVLKFDESL---PD 75
+ FS EL+ TNN+DER + K + +YKG+ ++V K + +
Sbjct: 6 FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTE 65
Query: 76 SVYKYSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY 115
+ + I A+ H+++++L+G + LV+ Y
Sbjct: 66 ELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVY 105
>pdb|2NRY|A Chain A, Crystal Structure Of Irak-4
pdb|2NRY|B Chain B, Crystal Structure Of Irak-4
pdb|2NRY|C Chain C, Crystal Structure Of Irak-4
pdb|2NRY|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Query: 23 YRIFSAKELEIATNNYDEREVI----KQCDFYITKLYKGFWQERLISVLKFDESL---PD 75
+ FS EL+ TNN+DER + K + +YKG+ ++V K + +
Sbjct: 12 FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTE 71
Query: 76 SVYKYSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY 115
+ + I A+ H+++++L+G + LV+ Y
Sbjct: 72 ELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVY 111
>pdb|3QUP|A Chain A, Inhibitor Bound Structure Of The Kinase Domain Of The
Murine Receptor Tyrosine Kinase Tyro3 (Sky)
Length = 323
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 6/38 (15%)
Query: 90 QMDHKHILKLIGCCLET------PIPILVFEYGEYRTL 121
+ DH H+ KL+G L + PIP+++ + ++ L
Sbjct: 81 EFDHPHVAKLVGVSLRSRAKGRLPIPMVILPFMKHGDL 118
>pdb|2NRU|A Chain A, Crystal Structure Of Irak-4
pdb|2NRU|B Chain B, Crystal Structure Of Irak-4
pdb|2NRU|C Chain C, Crystal Structure Of Irak-4
pdb|2NRU|D Chain D, Crystal Structure Of Irak-4
Length = 307
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 24/100 (24%), Positives = 46/100 (46%), Gaps = 7/100 (7%)
Query: 23 YRIFSAKELEIATNNYDEREVI----KQCDFYITKLYKGFWQERLISVLKFDESL---PD 75
+ FS EL+ TNN+DER + K + +YKG+ ++V K + +
Sbjct: 12 FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYVNNTTVAVKKLAAMVDITTE 71
Query: 76 SVYKYSINNIVYAAQMDHKHILKLIGCCLETPIPILVFEY 115
+ + I A+ H+++++L+G + LV+ Y
Sbjct: 72 ELKQQFDQEIKVMAKCQHENLVELLGFSSDGDDLCLVYVY 111
>pdb|1XP4|A Chain A, Crystal Structure Of A Peptidoglycan Synthesis Regulatory
Factor (pbp3) From Streptococcus Pneumoniae
pdb|1XP4|B Chain B, Crystal Structure Of A Peptidoglycan Synthesis Regulatory
Factor (pbp3) From Streptococcus Pneumoniae
pdb|1XP4|C Chain C, Crystal Structure Of A Peptidoglycan Synthesis Regulatory
Factor (pbp3) From Streptococcus Pneumoniae
pdb|1XP4|D Chain D, Crystal Structure Of A Peptidoglycan Synthesis Regulatory
Factor (pbp3) From Streptococcus Pneumoniae
Length = 379
Score = 26.2 bits (56), Expect = 4.5, Method: Composition-based stats.
Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 2 VRNGATVLKELIASSHGKYNPYRIFSAKE--LEIATNNYDEREVIKQCDFY 50
V G V+ ++ + H NPY F+A + ++ + R++++Q D Y
Sbjct: 240 VEKGXRVITVVLNADHQDNNPYARFTATSSLXDYISSTFTLRKIVQQGDAY 290
>pdb|1LUF|A Chain A, Crystal Structure Of The Musk Tyrosine Kinase: Insights
Into Receptor Autoregulation
Length = 343
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 89 AQMDHKHILKLIGCCLETPIPILVFEYGEYRTL 121
A+ D+ +I+KL+G C L+FEY Y L
Sbjct: 105 AEFDNPNIVKLLGVCAVGKPMCLLFEYMAYGDL 137
>pdb|1MLD|A Chain A, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|B Chain B, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|C Chain C, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
pdb|1MLD|D Chain D, Refined Structure Of Mitochondrial Malate Dehydrogenase
From Porcine Heart And The Consensus Structure For
Dicarboxylic Acid Oxidoreductases
Length = 314
Score = 25.8 bits (55), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 17 HGKYNPYRIFSAKELEIATNN 37
HG YNP +IF L+I N
Sbjct: 134 HGVYNPNKIFGVTTLDIVRAN 154
>pdb|2DFD|A Chain A, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|B Chain B, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|C Chain C, Crystal Structure Of Human Malate Dehydrogenase Type 2
pdb|2DFD|D Chain D, Crystal Structure Of Human Malate Dehydrogenase Type 2
Length = 342
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 17 HGKYNPYRIFSAKELEIATNN 37
HG YNP +IF L+I N
Sbjct: 162 HGVYNPNKIFGVTTLDIVRAN 182
>pdb|3CD3|A Chain A, Crystal Structure Of Phosphorylated Human Feline Sarcoma
Viral Oncogene Homologue (V-Fes) In Complex With
Staurosporine And A Consensus Peptide
Length = 377
Score = 25.8 bits (55), Expect = 6.2, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 63 LISVLKFDESLPDSVYKYSINNIVYAAQMDHKHILKLIGCCLET-PIPILV 112
L++V E+LP + + Q H +I++LIG C + PI I++
Sbjct: 141 LVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVM 191
>pdb|3BKB|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)
pdb|3CBL|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (v- Fes) In Complex With Staurosporine And A
Consensus Peptide
pdb|4E93|A Chain A, Crystal Structure Of Human Feline Sarcoma Viral Oncogene
Homologue (V- Fes)in Complex With Tae684
Length = 377
Score = 25.8 bits (55), Expect = 6.2, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Query: 63 LISVLKFDESLPDSVYKYSINNIVYAAQMDHKHILKLIGCCLET-PIPILV 112
L++V E+LP + + Q H +I++LIG C + PI I++
Sbjct: 141 LVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQKQPIYIVM 191
>pdb|3S4U|A Chain A, Crystal Structure Of Open, Unliganded E. Coli Phnd H157a
Length = 321
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 9/81 (11%)
Query: 29 KELEIATNNYDEREVIKQCDFYITKLYKGFWQERLISV------LKFDESLPDSVYKYSI 82
K++++ATNN + + +K K K W+ LI E+ D +Y + +
Sbjct: 176 KQVDVATNNTENLDKLKTSAPEKLKELKVIWKSPLIPGDPIVWRKNLSETTKDKIYDFFM 235
Query: 83 NNIVYAAQMDHKHILKLIGCC 103
N Y + K +L+ +G
Sbjct: 236 N---YGKTPEEKAVLERLGWA 253
>pdb|3P7I|A Chain A, Crystal Structure Of Escherichia Coli Phnd In Complex With
2- Aminoethyl Phosphonate
Length = 321
Score = 25.4 bits (54), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 9/81 (11%)
Query: 29 KELEIATNNYDEREVIKQCDFYITKLYKGFWQERLISV------LKFDESLPDSVYKYSI 82
K++++ATNN + + +K K K W+ LI E+ D +Y + +
Sbjct: 176 KQVDVATNNTENLDKLKTSAPEKLKELKVIWKSPLIPGDPIVWRKNLSETTKDKIYDFFM 235
Query: 83 NNIVYAAQMDHKHILKLIGCC 103
N Y + K +L+ +G
Sbjct: 236 N---YGKTPEEKAVLERLGWA 253
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,703,342
Number of Sequences: 62578
Number of extensions: 139626
Number of successful extensions: 485
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 417
Number of HSP's gapped (non-prelim): 79
length of query: 121
length of database: 14,973,337
effective HSP length: 83
effective length of query: 38
effective length of database: 9,779,363
effective search space: 371615794
effective search space used: 371615794
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)