Query 045249
Match_columns 211
No_of_seqs 156 out of 1544
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 11:19:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045249.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045249hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd00265 MADS_MEF2_like MEF2 (m 100.0 2.7E-34 5.8E-39 196.3 4.4 72 1-72 1-72 (77)
2 KOG0014 MADS box transcription 100.0 2.5E-33 5.3E-38 224.4 7.2 72 1-72 2-75 (195)
3 cd00266 MADS_SRF_like SRF-like 100.0 2E-31 4.4E-36 184.7 6.6 72 1-72 1-73 (83)
4 smart00432 MADS MADS domain. 100.0 2.6E-31 5.6E-36 171.5 5.3 59 1-59 1-59 (59)
5 cd00120 MADS MADS: MCM1, Agamo 100.0 1.9E-30 4.2E-35 167.5 4.4 59 1-59 1-59 (59)
6 PF00319 SRF-TF: SRF-type tran 99.9 3.2E-28 7E-33 152.1 2.4 51 8-58 1-51 (51)
7 KOG0015 Regulator of arginine 99.8 4.3E-21 9.3E-26 157.4 2.7 72 1-72 63-143 (338)
8 COG5068 ARG80 Regulator of arg 99.4 5.8E-14 1.3E-18 120.5 3.9 67 1-67 82-148 (412)
9 PF01486 K-box: K-box region; 98.6 3.1E-07 6.8E-12 65.8 7.8 70 86-164 8-77 (100)
10 PF10491 Nrf1_DNA-bind: NLS-bi 93.9 0.17 3.6E-06 40.5 5.7 44 27-70 41-87 (214)
11 PF07106 TBPIP: Tat binding pr 86.5 8.5 0.00019 29.8 9.2 66 83-161 72-137 (169)
12 PF06698 DUF1192: Protein of u 85.7 2.2 4.8E-05 27.3 4.4 33 126-158 14-46 (59)
13 KOG4252 GTP-binding protein [S 82.6 9.4 0.0002 30.4 7.6 28 37-70 90-117 (246)
14 PRK13729 conjugal transfer pil 75.1 13 0.00029 33.7 7.2 41 58-105 51-91 (475)
15 PF04521 Viral_P18: ssRNA posi 69.8 5.4 0.00012 29.2 2.9 22 17-38 4-25 (120)
16 PF05700 BCAS2: Breast carcino 69.5 42 0.00091 27.2 8.5 95 56-161 60-164 (221)
17 KOG4302 Microtubule-associated 67.4 71 0.0015 30.5 10.4 71 84-160 111-184 (660)
18 PF10584 Proteasome_A_N: Prote 67.0 2 4.4E-05 22.1 0.2 11 44-54 5-15 (23)
19 TIGR00993 3a0901s04IAP86 chlor 66.7 31 0.00067 33.1 7.9 12 197-208 525-536 (763)
20 PF14282 FlxA: FlxA-like prote 65.0 48 0.001 23.6 8.4 57 89-163 18-74 (106)
21 PF09403 FadA: Adhesion protei 64.2 19 0.00041 26.8 4.9 23 136-158 89-111 (126)
22 PF15079 DUF4546: Domain of un 64.0 52 0.0011 25.7 7.4 64 83-164 47-110 (205)
23 PF03938 OmpH: Outer membrane 58.9 75 0.0016 23.8 8.2 72 60-154 23-94 (158)
24 PF07106 TBPIP: Tat binding pr 58.8 81 0.0018 24.2 8.4 57 85-158 111-167 (169)
25 PF09151 DUF1936: Domain of un 58.3 7.9 0.00017 21.3 1.5 27 34-60 3-31 (36)
26 PF06637 PV-1: PV-1 protein (P 55.1 1.5E+02 0.0034 26.3 9.9 12 59-70 263-274 (442)
27 COG3883 Uncharacterized protei 53.2 99 0.0021 26.0 7.9 27 135-161 79-105 (265)
28 KOG0432 Valyl-tRNA synthetase 53.2 36 0.00079 33.4 5.9 24 90-113 930-953 (995)
29 KOG4603 TBP-1 interacting prot 51.5 1.2E+02 0.0025 24.0 7.4 28 133-160 116-143 (201)
30 PRK01919 tatB sec-independent 51.0 1.2E+02 0.0026 23.8 8.7 11 42-52 15-25 (169)
31 PF11944 DUF3461: Protein of u 50.5 86 0.0019 23.2 6.3 25 135-159 101-125 (125)
32 KOG3048 Molecular chaperone Pr 50.4 46 0.00099 25.3 5.0 35 127-161 7-41 (153)
33 PRK04098 sec-independent trans 49.3 49 0.0011 25.6 5.1 28 133-160 81-108 (158)
34 PF11285 DUF3086: Protein of u 47.8 1.7E+02 0.0037 24.6 10.9 63 85-160 6-71 (283)
35 COG1938 Archaeal enzymes of AT 47.3 49 0.0011 27.5 5.2 62 39-110 169-231 (244)
36 KOG3990 Uncharacterized conser 47.1 1.1E+02 0.0024 25.6 7.1 60 91-160 226-287 (305)
37 PF00804 Syntaxin: Syntaxin; 47.1 88 0.0019 21.1 8.0 67 87-162 4-71 (103)
38 PF10498 IFT57: Intra-flagella 46.0 61 0.0013 28.5 5.9 34 82-115 258-291 (359)
39 COG4575 ElaB Uncharacterized c 45.8 1.1E+02 0.0024 21.9 6.6 29 131-159 32-60 (104)
40 PF15372 DUF4600: Domain of un 45.3 1.3E+02 0.0028 22.5 8.0 28 129-156 47-74 (129)
41 PHA02592 52 DNA topisomerase I 43.0 72 0.0016 28.9 6.0 44 22-70 282-325 (439)
42 PF09941 DUF2173: Uncharacteri 43.0 25 0.00054 25.4 2.5 38 30-68 2-42 (108)
43 PF10046 BLOC1_2: Biogenesis o 42.5 1.2E+02 0.0025 21.3 7.7 23 135-157 75-97 (99)
44 PF00843 Arena_nucleocap: Aren 42.0 30 0.00066 31.2 3.4 54 97-154 59-112 (533)
45 PHA03162 hypothetical protein; 40.3 1.6E+02 0.0034 22.1 8.2 56 92-152 15-70 (135)
46 PF04977 DivIC: Septum formati 40.2 66 0.0014 20.9 4.2 24 87-110 21-44 (80)
47 PF14193 DUF4315: Domain of un 39.7 89 0.0019 21.4 4.7 16 132-147 47-62 (83)
48 TIGR02894 DNA_bind_RsfA transc 39.2 1.8E+02 0.004 22.5 7.2 26 85-110 99-124 (161)
49 PF06657 Cep57_MT_bd: Centroso 38.1 1.3E+02 0.0027 20.3 8.8 61 87-160 14-74 (79)
50 KOG3718 Carnitine O-acyltransf 37.7 54 0.0012 30.0 4.3 27 46-72 13-39 (609)
51 PF09278 MerR-DNA-bind: MerR, 37.7 90 0.002 19.5 4.4 24 137-160 33-56 (65)
52 smart00787 Spc7 Spc7 kinetocho 37.5 2.1E+02 0.0044 24.7 7.7 31 129-159 197-227 (312)
53 TIGR02231 conserved hypothetic 37.3 2.5E+02 0.0054 25.8 8.8 28 83-110 71-98 (525)
54 TIGR03545 conserved hypothetic 37.2 53 0.0011 30.7 4.4 17 37-54 103-119 (555)
55 KOG0250 DNA repair protein RAD 37.0 3.4E+02 0.0074 27.5 9.9 18 42-59 620-637 (1074)
56 PF10458 Val_tRNA-synt_C: Valy 36.9 1.1E+02 0.0025 19.5 4.9 22 90-111 4-25 (66)
57 PF15233 SYCE1: Synaptonemal c 36.7 66 0.0014 24.0 4.0 57 83-150 6-62 (134)
58 PRK11239 hypothetical protein; 36.7 55 0.0012 26.6 3.8 61 12-72 73-144 (215)
59 TIGR01916 F420_cofE F420-0:gam 36.4 42 0.0009 27.9 3.2 28 33-60 134-161 (243)
60 cd00187 TOP4c DNA Topoisomeras 35.9 53 0.0011 29.8 4.1 25 43-70 302-326 (445)
61 TIGR03752 conj_TIGR03752 integ 35.9 3.5E+02 0.0076 24.8 9.5 27 84-110 67-93 (472)
62 PRK14625 hypothetical protein; 35.7 1.1E+02 0.0024 22.1 4.9 31 133-163 59-89 (109)
63 TIGR01478 STEVOR variant surfa 35.5 67 0.0014 27.3 4.3 44 6-70 25-69 (295)
64 COG4052 Uncharacterized protei 35.4 71 0.0015 26.5 4.3 40 27-68 54-101 (310)
65 PF08317 Spc7: Spc7 kinetochor 35.3 2.6E+02 0.0056 24.0 8.1 31 129-159 202-232 (325)
66 KOG0995 Centromere-associated 35.2 1.2E+02 0.0025 28.4 6.1 33 81-113 292-324 (581)
67 PF13591 MerR_2: MerR HTH fami 35.0 33 0.00071 23.3 2.1 15 31-45 3-17 (84)
68 PF05812 Herpes_BLRF2: Herpesv 34.9 1.8E+02 0.004 21.3 8.3 57 91-152 4-60 (118)
69 PRK10265 chaperone-modulator p 34.7 33 0.00071 24.3 2.1 15 31-45 10-24 (101)
70 PF05549 Allexi_40kDa: Allexiv 34.0 2.8E+02 0.0062 23.2 11.3 85 59-165 59-143 (271)
71 KOG0804 Cytoplasmic Zn-finger 33.9 2.4E+02 0.0053 25.7 7.7 70 88-161 380-449 (493)
72 COG3883 Uncharacterized protei 33.5 2.9E+02 0.0064 23.3 8.3 63 83-163 52-114 (265)
73 PRK02224 chromosome segregatio 33.0 3.9E+02 0.0084 26.2 9.8 14 57-70 462-475 (880)
74 PF14257 DUF4349: Domain of un 32.0 2.9E+02 0.0063 22.7 12.4 113 27-159 64-185 (262)
75 PLN03230 acetyl-coenzyme A car 31.4 2.8E+02 0.006 25.1 7.7 20 136-155 105-124 (431)
76 PF06937 EURL: EURL protein; 31.2 85 0.0018 26.5 4.2 36 126-161 212-247 (285)
77 PF13870 DUF4201: Domain of un 30.8 2.5E+02 0.0054 21.6 7.9 31 131-161 37-67 (177)
78 PRK00064 recF recombination pr 30.8 3.6E+02 0.0078 23.5 8.4 38 29-70 103-141 (361)
79 PRK11637 AmiB activator; Provi 30.4 3.4E+02 0.0075 24.2 8.4 29 135-163 109-137 (428)
80 PF11460 DUF3007: Protein of u 29.9 86 0.0019 22.5 3.5 18 129-146 86-103 (104)
81 PF14723 SSFA2_C: Sperm-specif 29.7 1.9E+02 0.004 22.8 5.6 19 136-154 159-177 (179)
82 PRK04863 mukB cell division pr 29.4 2.5E+02 0.0053 29.8 8.0 32 129-160 431-462 (1486)
83 PF14077 WD40_alt: Alternative 29.4 70 0.0015 19.3 2.5 27 83-109 11-37 (48)
84 PF01166 TSC22: TSC-22/dip/bun 29.2 1.5E+02 0.0032 19.0 4.0 27 84-110 15-41 (59)
85 COG2433 Uncharacterized conser 29.1 3.4E+02 0.0073 25.8 8.0 23 87-109 433-455 (652)
86 KOG4316 Uncharacterized conser 28.9 25 0.00053 26.8 0.7 42 32-73 43-95 (172)
87 PF08557 Lipid_DES: Sphingolip 28.8 39 0.00084 19.7 1.3 21 21-41 16-36 (39)
88 COG4831 Roadblock/LC7 domain [ 28.7 44 0.00095 23.6 1.8 28 29-57 3-30 (109)
89 PF05852 DUF848: Gammaherpesvi 28.6 2.7E+02 0.0058 21.3 8.9 33 130-162 83-115 (146)
90 PHA03155 hypothetical protein; 28.6 2.4E+02 0.0051 20.6 8.3 52 92-152 10-61 (115)
91 PRK14626 hypothetical protein; 28.1 78 0.0017 22.9 3.1 25 85-109 7-31 (110)
92 PF02403 Seryl_tRNA_N: Seryl-t 28.1 2.1E+02 0.0046 19.9 5.8 72 83-161 29-102 (108)
93 PF15188 CCDC-167: Coiled-coil 28.1 2.1E+02 0.0044 19.8 7.3 50 89-153 4-53 (85)
94 COG4259 Uncharacterized protei 27.7 52 0.0011 23.7 2.1 62 28-106 4-67 (121)
95 KOG1029 Endocytic adaptor prot 27.6 4.7E+02 0.01 25.9 8.7 36 9-44 431-467 (1118)
96 PF06020 Roughex: Drosophila r 27.2 29 0.00063 29.5 0.9 17 35-51 183-199 (334)
97 PRK00888 ftsB cell division pr 27.2 1.4E+02 0.0029 21.3 4.2 27 85-111 29-55 (105)
98 PRK10947 global DNA-binding tr 27.0 2.7E+02 0.0059 20.9 6.0 8 131-138 68-75 (135)
99 PF10148 SCHIP-1: Schwannomin- 26.7 3.5E+02 0.0076 22.4 7.0 35 129-163 169-203 (238)
100 KOG0639 Transducin-like enhanc 26.5 5.4E+02 0.012 24.1 9.2 25 85-109 32-56 (705)
101 PF00846 Hanta_nucleocap: Hant 26.4 1.4E+02 0.0029 26.7 4.8 69 85-163 4-72 (428)
102 TIGR02780 TrbJ_Ti P-type conju 26.0 3.7E+02 0.0081 22.1 9.2 23 85-107 45-67 (246)
103 PF14009 DUF4228: Domain of un 25.9 64 0.0014 24.4 2.6 33 38-70 12-45 (181)
104 PF08432 Vfa1: AAA-ATPase Vps4 25.5 94 0.002 24.4 3.5 14 38-51 11-24 (182)
105 PRK05431 seryl-tRNA synthetase 24.4 5.2E+02 0.011 23.2 9.8 26 85-110 30-55 (425)
106 PF11932 DUF3450: Protein of u 24.3 2.3E+02 0.005 23.2 5.7 27 84-110 50-76 (251)
107 PRK04654 sec-independent trans 24.0 3.2E+02 0.007 22.2 6.2 17 33-51 8-24 (214)
108 COG4917 EutP Ethanolamine util 23.8 66 0.0014 24.2 2.1 23 34-56 59-81 (148)
109 KOG2077 JNK/SAPK-associated pr 23.6 6.3E+02 0.014 24.1 8.6 15 129-143 384-398 (832)
110 PRK10884 SH3 domain-containing 23.5 3.9E+02 0.0085 21.5 7.7 16 86-101 96-111 (206)
111 PF12325 TMF_TATA_bd: TATA ele 23.5 3E+02 0.0066 20.1 7.3 22 136-157 96-117 (120)
112 KOG4797 Transcriptional regula 23.4 2.9E+02 0.0063 20.0 5.2 14 133-146 97-110 (123)
113 PRK09039 hypothetical protein; 23.3 5E+02 0.011 22.6 8.0 29 82-110 136-164 (343)
114 PRK13677 hypothetical protein; 23.2 3.1E+02 0.0068 20.2 6.2 25 135-159 101-125 (125)
115 TIGR03007 pepcterm_ChnLen poly 22.9 5.1E+02 0.011 23.4 8.2 48 61-109 140-187 (498)
116 PF06156 DUF972: Protein of un 22.6 1.7E+02 0.0036 21.0 4.0 16 88-103 13-28 (107)
117 PRK10328 DNA binding protein, 22.2 3.4E+02 0.0074 20.3 6.0 8 131-138 68-75 (134)
118 PRK10803 tol-pal system protei 22.1 1E+02 0.0022 25.8 3.2 71 32-109 10-80 (263)
119 KOG4571 Activating transcripti 22.1 4.7E+02 0.01 22.4 7.0 16 95-110 253-268 (294)
120 PRK13293 F420-0--gamma-glutamy 22.0 1E+02 0.0023 25.6 3.2 28 32-59 134-161 (245)
121 KOG2709 Uncharacterized conser 21.8 3.8E+02 0.0081 24.5 6.7 29 135-163 71-99 (560)
122 KOG2861 Uncharacterized conser 21.5 2.4E+02 0.0052 25.3 5.5 84 11-105 276-362 (399)
123 TIGR02420 dksA RNA polymerase- 21.2 2.5E+02 0.0054 20.0 4.7 29 133-161 1-29 (110)
124 PF04678 DUF607: Protein of un 21.1 4.1E+02 0.0088 20.7 6.4 52 56-110 32-84 (180)
125 PF14775 NYD-SP28_assoc: Sperm 21.0 2.3E+02 0.0051 17.9 4.1 24 92-115 35-58 (60)
126 cd04751 Commd3 COMM_Domain con 21.0 1.4E+02 0.0031 20.7 3.3 23 132-154 70-92 (95)
127 PF02183 HALZ: Homeobox associ 21.0 2E+02 0.0044 17.1 4.2 24 87-110 9-32 (45)
128 cd00468 HIT_like HIT family: H 20.9 1.6E+02 0.0035 19.1 3.6 25 129-153 31-55 (86)
129 PF07820 TraC: TraC-like prote 20.9 3.1E+02 0.0066 19.2 6.8 21 85-105 4-24 (92)
130 PRK06851 hypothetical protein; 20.9 5.3E+02 0.012 22.8 7.6 28 24-51 43-70 (367)
131 COG0216 PrfA Protein chain rel 20.7 2.4E+02 0.0052 24.7 5.2 42 60-101 8-51 (363)
132 COG5509 Uncharacterized small 20.7 1.7E+02 0.0037 18.8 3.2 23 84-106 26-48 (65)
133 TIGR03726 strep_RK_lipo putati 20.4 48 0.001 18.7 0.6 16 28-43 3-18 (34)
134 PRK13169 DNA replication intia 20.4 2E+02 0.0043 20.8 4.0 15 89-103 14-28 (110)
135 PF04912 Dynamitin: Dynamitin 20.3 2.8E+02 0.006 24.5 5.8 21 17-37 263-283 (388)
136 PF03250 Tropomodulin: Tropomo 20.3 70 0.0015 24.4 1.7 19 129-147 20-38 (147)
137 PF13252 DUF4043: Protein of u 20.3 45 0.00097 29.1 0.7 25 33-57 273-299 (341)
138 PF00383 dCMP_cyt_deam_1: Cyti 20.2 99 0.0021 21.1 2.4 29 26-54 6-38 (102)
139 KOG1318 Helix loop helix trans 20.2 6.5E+02 0.014 22.7 7.9 17 21-37 242-258 (411)
140 PF08796 DUF1797: Protein of u 20.2 69 0.0015 21.0 1.4 19 38-56 24-42 (67)
141 KOG0184 20S proteasome, regula 20.2 52 0.0011 27.0 1.0 21 35-55 3-23 (254)
142 PRK00708 sec-independent trans 20.1 2.3E+02 0.0051 23.0 4.7 18 32-51 7-24 (209)
143 PF07334 IFP_35_N: Interferon- 20.1 1.9E+02 0.0042 19.5 3.6 21 87-107 4-24 (76)
144 PF01519 DUF16: Protein of unk 20.0 3.4E+02 0.0073 19.4 8.0 22 137-159 79-100 (102)
145 PRK10132 hypothetical protein; 20.0 3.4E+02 0.0074 19.5 6.9 55 87-158 9-63 (108)
No 1
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=100.00 E-value=2.7e-34 Score=196.30 Aligned_cols=72 Identities=51% Similarity=0.882 Sum_probs=70.5
Q ss_pred CcccceeEEcCCCccchhhhhhhhhhHHHHHHHHhhhhccceEEEEeCCCCcccccCCCchhhHHHHhhhcC
Q 045249 1 GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPDFDKILNRYLDQN 72 (211)
Q Consensus 1 GR~Ki~i~~I~n~~~R~vTF~KRr~GL~KKa~ELs~LC~veva~ivfsp~gk~~~f~~psv~~Vl~ry~~~~ 72 (211)
||+||+|++|+|+++|++||+|||.||||||.|||+||||+||+|||||+|++|+|++|++++||+||+..+
T Consensus 1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~s~~~vl~ry~~~~ 72 (77)
T cd00265 1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSPSMEKIIERYQKTS 72 (77)
T ss_pred CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCCCHHHHHHHHHhcc
Confidence 899999999999999999999999999999999999999999999999999999999999999999998855
No 2
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=100.00 E-value=2.5e-33 Score=224.43 Aligned_cols=72 Identities=56% Similarity=0.962 Sum_probs=69.9
Q ss_pred CcccceeEEcCCCccchhhhhhhhhhHHHHHHHHhhhhccceEEEEeCCCCcccccCCCc--hhhHHHHhhhcC
Q 045249 1 GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPD--FDKILNRYLDQN 72 (211)
Q Consensus 1 GR~Ki~i~~I~n~~~R~vTF~KRr~GL~KKa~ELs~LC~veva~ivfsp~gk~~~f~~ps--v~~Vl~ry~~~~ 72 (211)
||+||+|++|+|+++|+|||+|||.||||||+||||||||+||+|||||+|++|+|++|+ |+.|++||....
T Consensus 2 ~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~ 75 (195)
T KOG0014|consen 2 GRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLT 75 (195)
T ss_pred CCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhh
Confidence 899999999999999999999999999999999999999999999999999999999987 999999998865
No 3
>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.97 E-value=2e-31 Score=184.73 Aligned_cols=72 Identities=49% Similarity=0.844 Sum_probs=69.3
Q ss_pred CcccceeEEcCCCccchhhhhhhhhhHHHHHHHHhhhhccceEEEEeCCCCcccccCCCc-hhhHHHHhhhcC
Q 045249 1 GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPD-FDKILNRYLDQN 72 (211)
Q Consensus 1 GR~Ki~i~~I~n~~~R~vTF~KRr~GL~KKa~ELs~LC~veva~ivfsp~gk~~~f~~ps-v~~Vl~ry~~~~ 72 (211)
||+||+|++|+|+.+|++||+|||.||||||+||||||||+||+|||||+|+.+.|++++ ++.++++|...+
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~ 73 (83)
T cd00266 1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLS 73 (83)
T ss_pred CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcC
Confidence 899999999999999999999999999999999999999999999999999999998776 999999998865
No 4
>smart00432 MADS MADS domain.
Probab=99.97 E-value=2.6e-31 Score=171.47 Aligned_cols=59 Identities=63% Similarity=1.019 Sum_probs=58.2
Q ss_pred CcccceeEEcCCCccchhhhhhhhhhHHHHHHHHhhhhccceEEEEeCCCCcccccCCC
Q 045249 1 GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHP 59 (211)
Q Consensus 1 GR~Ki~i~~I~n~~~R~vTF~KRr~GL~KKa~ELs~LC~veva~ivfsp~gk~~~f~~p 59 (211)
||+||+|++|+|+++|++||+|||.||||||+||||||||+||+|||||+|++++|++|
T Consensus 1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p 59 (59)
T smart00432 1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59 (59)
T ss_pred CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence 89999999999999999999999999999999999999999999999999999999987
No 5
>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.96 E-value=1.9e-30 Score=167.54 Aligned_cols=59 Identities=63% Similarity=0.950 Sum_probs=57.7
Q ss_pred CcccceeEEcCCCccchhhhhhhhhhHHHHHHHHhhhhccceEEEEeCCCCcccccCCC
Q 045249 1 GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHP 59 (211)
Q Consensus 1 GR~Ki~i~~I~n~~~R~vTF~KRr~GL~KKa~ELs~LC~veva~ivfsp~gk~~~f~~p 59 (211)
||+||+|++|+|+.+|++||+|||.||||||+||||||||+||+|||||+|++++|++|
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~ 59 (59)
T cd00120 1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59 (59)
T ss_pred CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence 89999999999999999999999999999999999999999999999999999999875
No 6
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=99.94 E-value=3.2e-28 Score=152.07 Aligned_cols=51 Identities=53% Similarity=0.937 Sum_probs=46.6
Q ss_pred EEcCCCccchhhhhhhhhhHHHHHHHHhhhhccceEEEEeCCCCcccccCC
Q 045249 8 KKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGH 58 (211)
Q Consensus 8 ~~I~n~~~R~vTF~KRr~GL~KKa~ELs~LC~veva~ivfsp~gk~~~f~~ 58 (211)
++|+|++.|++||+|||.||||||.||||||||+||+|||||+|++|+|++
T Consensus 1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s 51 (51)
T PF00319_consen 1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS 51 (51)
T ss_dssp S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence 589999999999999999999999999999999999999999999999975
No 7
>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.81 E-value=4.3e-21 Score=157.37 Aligned_cols=72 Identities=35% Similarity=0.598 Sum_probs=65.9
Q ss_pred CcccceeEEcCCCccchhhhhhhhhhHHHHHHHHhhhhccceEEEEeCCCCcccccCCCch---------hhHHHHhhhc
Q 045249 1 GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPDF---------DKILNRYLDQ 71 (211)
Q Consensus 1 GR~Ki~i~~I~n~~~R~vTF~KRr~GL~KKa~ELs~LC~veva~ivfsp~gk~~~f~~psv---------~~Vl~ry~~~ 71 (211)
||+||+|++|+|+..|.+||+|||.||||||+|||||+|.+|-|+|.|.+|-+|+|++|.. +++|...++.
T Consensus 63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i~s~~Gk~lIq~cLn~ 142 (338)
T KOG0015|consen 63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMITSDEGKALIQACLNA 142 (338)
T ss_pred ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEeccccccccccchhhHHHHHHHhcC
Confidence 7999999999999999999999999999999999999999999999999999999999865 4566666664
Q ss_pred C
Q 045249 72 N 72 (211)
Q Consensus 72 ~ 72 (211)
+
T Consensus 143 p 143 (338)
T KOG0015|consen 143 P 143 (338)
T ss_pred C
Confidence 4
No 8
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.44 E-value=5.8e-14 Score=120.52 Aligned_cols=67 Identities=37% Similarity=0.569 Sum_probs=62.7
Q ss_pred CcccceeEEcCCCccchhhhhhhhhhHHHHHHHHhhhhccceEEEEeCCCCcccccCCCchhhHHHH
Q 045249 1 GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPDFDKILNR 67 (211)
Q Consensus 1 GR~Ki~i~~I~n~~~R~vTF~KRr~GL~KKa~ELs~LC~veva~ivfsp~gk~~~f~~psv~~Vl~r 67 (211)
||+||.|.+|+|+.+|.|||+||+.||+|||.||++|.|.+|.++|.|..|.+++|+.|..+.|+.-
T Consensus 82 ~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~~e~v~~~ 148 (412)
T COG5068 82 TGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPKLESVVKS 148 (412)
T ss_pred ccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCcccccccc
Confidence 6999999999999999999999999999999999999999999999999999999999876665543
No 9
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=98.57 E-value=3.1e-07 Score=65.77 Aligned_cols=70 Identities=17% Similarity=0.356 Sum_probs=56.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q 045249 86 QQHNKEYEDAMQELEKEKKRGKMIEEEKKKNKSNGRFWWQEGNIIDDMGIEELEEYLKAMKKLKGKVEMRVNEIMMNGY 164 (211)
Q Consensus 86 ~~l~~~~~~l~~el~k~kk~~~~l~~~~~~~~~~~~~~~~~G~~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~L~~~~~ 164 (211)
..+...+..+..++.+++.+++.++...+. ..|++|++|+++||..|+..|+..+..||.|+.+++++++
T Consensus 8 ~~~~~~~e~~~~e~~~L~~~~~~L~~~~R~---------~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i 77 (100)
T PF01486_consen 8 DLWDSQHEELQQEIAKLRKENESLQKELRH---------LMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQI 77 (100)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhc---------cccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 355566666777777777777777644433 1489999999999999999999999999999999998765
No 10
>PF10491 Nrf1_DNA-bind: NLS-binding and DNA-binding and dimerisation domains of Nrf1; InterPro: IPR019525 Nuclear respiratory factor-1 is a transcriptional activator that has been implicated in the nuclear control of respiratory chain expression in vertebrates. The first 26 amino acids of nuclear respiratory factor-1 are required for the binding of dynein light chain. The interaction with dynein light chain is observed for both ewg and Nrf-1, transcription factors that are structurally and functionally similar between humans and Drosophila []. In Drosophila, the erect wing (ewg) protein is required for proper development of the central nervous system and the indirect flight muscles. The fly ewg gene encodes a novel DNA-binding domain that is also found in four genes previously identified in sea urchin, chicken, zebrafish, and human []. The highest level of expression of both ewg and Nrf-1 was found in the central nervous system, somites, first branchial arch, optic vesicle, and otic vesicle. In the mouse Nrf-1 protein, Q8C4C0 from SWISSPROT, there is also an NLS domain at 88-116, and a DNA binding and dimerisation domain at 127-282. Ewg is a site-specific transcriptional activator, and evolutionarily conserved regions of ewg contribute both positively and negatively to transcriptional activity [].
Probab=93.90 E-value=0.17 Score=40.53 Aligned_cols=44 Identities=11% Similarity=0.209 Sum_probs=36.9
Q ss_pred HHHHHHHHhhhhccceEEEEeCCCCc---ccccCCCchhhHHHHhhh
Q 045249 27 LFSKAMELCVLCGAEVGIIVFSPNGK---IFLAGHPDFDKILNRYLD 70 (211)
Q Consensus 27 L~KKa~ELs~LC~veva~ivfsp~gk---~~~f~~psv~~Vl~ry~~ 70 (211)
|-.=..|++|-+|-+|+|++.+|+.. ...||.-..+.|+..|+.
T Consensus 41 l~~~~de~~trvGqqavvl~~~p~kp~~~f~vfGa~pL~~vv~~~~~ 87 (214)
T PF10491_consen 41 LRQTIDEYTTRVGQQAVVLCCTPSKPNPVFKVFGAAPLENVVRNLKP 87 (214)
T ss_pred HHHHHHHHHHhhhceeEEEEecCCCCCCceeeecchhHHHHHHHHHH
Confidence 44456799999999999999999853 446788889999999977
No 11
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=86.55 E-value=8.5 Score=29.77 Aligned_cols=66 Identities=20% Similarity=0.249 Sum_probs=49.5
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045249 83 PCVQQHNKEYEDAMQELEKEKKRGKMIEEEKKKNKSNGRFWWQEGNIIDDMGIEELEEYLKAMKKLKGKVEMRVNEIMM 161 (211)
Q Consensus 83 ~~~~~l~~~~~~l~~el~k~kk~~~~l~~~~~~~~~~~~~~~~~G~~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~L~~ 161 (211)
.....+..++..|++++..++.....++..... -...++.+||......|..-+..+..|+..|..
T Consensus 72 eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~-------------L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 72 EELAELDAEIKELREELAELKKEVKSLEAELAS-------------LSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556667777777777777776666533332 335678999999999999999999999999875
No 12
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=85.73 E-value=2.2 Score=27.33 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=27.6
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 045249 126 EGNIIDDMGIEELEEYLKAMKKLKGKVEMRVNE 158 (211)
Q Consensus 126 ~G~~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~ 158 (211)
.|++|+.||++||.+-...|+.=+..++.-+..
T Consensus 14 ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~~~~ 46 (59)
T PF06698_consen 14 IGEDLSLLSVEELEERIALLEAEIARLEAAIAK 46 (59)
T ss_pred cCCCchhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999888887665443
No 13
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=82.62 E-value=9.4 Score=30.41 Aligned_cols=28 Identities=29% Similarity=0.572 Sum_probs=20.3
Q ss_pred hhccceEEEEeCCCCcccccCCCchhhHHHHhhh
Q 045249 37 LCGAEVGIIVFSPNGKIFLAGHPDFDKILNRYLD 70 (211)
Q Consensus 37 LC~veva~ivfsp~gk~~~f~~psv~~Vl~ry~~ 70 (211)
--||++||+|||.+++. |.+.+++=|..
T Consensus 90 yrgaqa~vLVFSTTDr~------SFea~~~w~~k 117 (246)
T KOG4252|consen 90 YRGAQASVLVFSTTDRY------SFEATLEWYNK 117 (246)
T ss_pred hccccceEEEEecccHH------HHHHHHHHHHH
Confidence 35899999999999853 34556666654
No 14
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=75.07 E-value=13 Score=33.72 Aligned_cols=41 Identities=10% Similarity=0.219 Sum_probs=19.7
Q ss_pred CCchhhHHHHhhhcCCCCcccccCccchhhhhHHHHHHHHHHHHHHHH
Q 045249 58 HPDFDKILNRYLDQNHSSLDEVNTIPCVQQHNKEYEDAMQELEKEKKR 105 (211)
Q Consensus 58 ~psv~~Vl~ry~~~~~~~~~~~~~~~~~~~l~~~~~~l~~el~k~kk~ 105 (211)
.|.|..|++...... .....+...+.....|++++++++.+
T Consensus 51 ~~~~~~vV~~~Fddk-------VnqSALteqQ~kasELEKqLaaLrqE 91 (475)
T PRK13729 51 VPDMTGVVDTTFDDK-------VRQHATTEMQVTAAQMQKQYEEIRRE 91 (475)
T ss_pred CCCccceecchhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777764421 11223333344455555555555433
No 15
>PF04521 Viral_P18: ssRNA positive strand viral 18kD cysteine rich protein; InterPro: IPR007609 This family represents the 18kDa cysteine-rich protein from ssRNA positive strand viruses.
Probab=69.79 E-value=5.4 Score=29.24 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=17.8
Q ss_pred hhhhhhhhhhHHHHHHHHhhhh
Q 045249 17 QVTFSKRRSGLFSKAMELCVLC 38 (211)
Q Consensus 17 ~vTF~KRr~GL~KKa~ELs~LC 38 (211)
-.+|+|+|..++||-.+-.+-|
T Consensus 4 ~~~~rk~R~~~y~~lgl~~vkC 25 (120)
T PF04521_consen 4 FRCVRKYRASVYKKLGLSAVKC 25 (120)
T ss_pred hHHHHHHHHHHHHHcCCeeeee
Confidence 4689999999999988866533
No 16
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=69.45 E-value=42 Score=27.24 Aligned_cols=95 Identities=20% Similarity=0.232 Sum_probs=60.8
Q ss_pred cCCCchhhHHHHhhhcCCC----------CcccccCccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCccccc
Q 045249 56 AGHPDFDKILNRYLDQNHS----------SLDEVNTIPCVQQHNKEYEDAMQELEKEKKRGKMIEEEKKKNKSNGRFWWQ 125 (211)
Q Consensus 56 f~~psv~~Vl~ry~~~~~~----------~~~~~~~~~~~~~l~~~~~~l~~el~k~kk~~~~l~~~~~~~~~~~~~~~~ 125 (211)
|.+|-+..=++|+.+..+. ..........+..|...+.....+++-..-+...|+-+.+. +...|-
T Consensus 60 ~~t~~l~~E~~R~~~~~~~~~lD~sRY~l~~p~~~~~~d~~~w~~al~na~a~lehq~~R~~NLeLl~~~---g~naW~- 135 (221)
T PF05700_consen 60 FETPLLQAELERVASGEPMQGLDMSRYELPPPPSGKSNDVEAWKEALDNAYAQLEHQRLRLENLELLSKY---GENAWL- 135 (221)
T ss_pred ccchhHHHHHHHHHcCCCCCccCHHhcCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHH-
Confidence 4446677777777654211 01111122357788999999988888888887777644332 222332
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045249 126 EGNIIDDMGIEELEEYLKAMKKLKGKVEMRVNEIMM 161 (211)
Q Consensus 126 ~G~~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~L~~ 161 (211)
...+.|..+...|+..+..++..++.+-.
T Consensus 136 -------~~n~~Le~~~~~le~~l~~~k~~ie~vN~ 164 (221)
T PF05700_consen 136 -------IHNEQLEAMLKRLEKELAKLKKEIEEVNR 164 (221)
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23578888888888888888888877653
No 17
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=67.45 E-value=71 Score=30.47 Aligned_cols=71 Identities=15% Similarity=0.224 Sum_probs=45.2
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccCC---ccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045249 84 CVQQHNKEYEDAMQELEKEKKRGKMIEEEKKKNKSNG---RFWWQEGNIIDDMGIEELEEYLKAMKKLKGKVEMRVNEIM 160 (211)
Q Consensus 84 ~~~~l~~~~~~l~~el~k~kk~~~~l~~~~~~~~~~~---~~~~~~G~~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~L~ 160 (211)
.+..+..++..-..++..+..+.+.+.... ++. ...... +..+|+.+.|.+|...|..+.+.-..|.+.+.
T Consensus 111 ~le~lr~qk~eR~~ef~el~~qie~l~~~l----~g~~~~~~~~~~--D~~dlsl~kLeelr~~L~~L~~ek~~Rlekv~ 184 (660)
T KOG4302|consen 111 YLEGLRKQKDERRAEFKELYHQIEKLCEEL----GGPEDLPSFLIA--DESDLSLEKLEELREHLNELQKEKSDRLEKVL 184 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCccCCccccc--CcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555554444222 222 112223 67889999999999999999999888888765
No 18
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=66.95 E-value=2 Score=22.07 Aligned_cols=11 Identities=55% Similarity=1.256 Sum_probs=8.8
Q ss_pred EEEeCCCCccc
Q 045249 44 IIVFSPNGKIF 54 (211)
Q Consensus 44 ~ivfsp~gk~~ 54 (211)
+.+|||.|+++
T Consensus 5 ~t~FSp~Grl~ 15 (23)
T PF10584_consen 5 ITTFSPDGRLF 15 (23)
T ss_dssp TTSBBTTSSBH
T ss_pred ceeECCCCeEE
Confidence 35799999976
No 19
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=66.65 E-value=31 Score=33.14 Aligned_cols=12 Identities=42% Similarity=0.742 Sum_probs=10.3
Q ss_pred CCCcCCCCCCCC
Q 045249 197 DGGVDFDFGFDE 208 (211)
Q Consensus 197 ~~~~~~~~g~~~ 208 (211)
+||||-+.|||+
T Consensus 525 ~~gWDhd~g~dg 536 (763)
T TIGR00993 525 THGWDHDCGYDG 536 (763)
T ss_pred CCCCccccCcCc
Confidence 388999999997
No 20
>PF14282 FlxA: FlxA-like protein
Probab=64.96 E-value=48 Score=23.65 Aligned_cols=57 Identities=5% Similarity=0.195 Sum_probs=35.4
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 045249 89 NKEYEDAMQELEKEKKRGKMIEEEKKKNKSNGRFWWQEGNIIDDMGIEELEEYLKAMKKLKGKVEMRVNEIMMNG 163 (211)
Q Consensus 89 ~~~~~~l~~el~k~kk~~~~l~~~~~~~~~~~~~~~~~G~~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~L~~~~ 163 (211)
..++..|+.++..+.+++.+|. .-.+|+.++-..-...|..-+..|...+.++..+.
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~------------------~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELS------------------QDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQ 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------------------cccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666655555544333 22556777777777777777777777777766544
No 21
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=64.21 E-value=19 Score=26.79 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 045249 136 EELEEYLKAMKKLKGKVEMRVNE 158 (211)
Q Consensus 136 eeL~~L~~~Le~~l~~V~~R~~~ 158 (211)
++..+|....++.++.+...|..
T Consensus 89 ~eYk~llk~y~~~~~~L~k~I~~ 111 (126)
T PF09403_consen 89 DEYKELLKKYKDLLNKLDKEIAE 111 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777777766554
No 22
>PF15079 DUF4546: Domain of unknown function (DUF4546)
Probab=64.02 E-value=52 Score=25.69 Aligned_cols=64 Identities=19% Similarity=0.316 Sum_probs=42.1
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 045249 83 PCVQQHNKEYEDAMQELEKEKKRGKMIEEEKKKNKSNGRFWWQEGNIIDDMGIEELEEYLKAMKKLKGKVEMRVNEIMMN 162 (211)
Q Consensus 83 ~~~~~l~~~~~~l~~el~k~kk~~~~l~~~~~~~~~~~~~~~~~G~~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~L~~~ 162 (211)
...+.|.+++....++|. ++.++++++. ++=+-+.+-|.+|...+.+.++.++++++-|+.-
T Consensus 47 G~T~eLkNeLREVREELk---EKmeEIKQIK---------------diMDKDFDKL~EFVEIMKeMQkDMDEKMDvLiNi 108 (205)
T PF15079_consen 47 GGTQELKNELREVREELK---EKMEEIKQIK---------------DIMDKDFDKLHEFVEIMKEMQKDMDEKMDVLINI 108 (205)
T ss_pred cccHHHHHHHHHHHHHHH---HHHHHHHHHH---------------HHHhhhHHHHHHHHHHHHHHHHhHHHhhhHHhhc
Confidence 334455555555554443 3334444332 3334467889999999999999999999998865
Q ss_pred Cc
Q 045249 163 GY 164 (211)
Q Consensus 163 ~~ 164 (211)
+-
T Consensus 109 QK 110 (205)
T PF15079_consen 109 QK 110 (205)
T ss_pred cc
Confidence 53
No 23
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=58.92 E-value=75 Score=23.85 Aligned_cols=72 Identities=11% Similarity=0.224 Sum_probs=36.2
Q ss_pred chhhHHHHhhhcCCCCcccccCccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCccccccCCCCCCCCHHHHH
Q 045249 60 DFDKILNRYLDQNHSSLDEVNTIPCVQQHNKEYEDAMQELEKEKKRGKMIEEEKKKNKSNGRFWWQEGNIIDDMGIEELE 139 (211)
Q Consensus 60 sv~~Vl~ry~~~~~~~~~~~~~~~~~~~l~~~~~~l~~el~k~kk~~~~l~~~~~~~~~~~~~~~~~G~~l~~Ls~eeL~ 139 (211)
.++.|+..|.... .....+.......+.++....+..+.+.+.... .-..||.++..
T Consensus 23 d~~~v~~~~~~~k----------~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~-------------~~~~ls~~~~~ 79 (158)
T PF03938_consen 23 DVDKVFQESPAGK----------DAQAKLQEKFKALQKELQAKQKELQKLQQKLQS-------------QKATLSEEERQ 79 (158)
T ss_dssp -HHHHHHHHHHHH----------THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-------------S----SSHHHH
T ss_pred eHHHHHHhCHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HhhccchhHHH
Confidence 5678888874421 233445555555555555555554443322211 23366777766
Q ss_pred HHHHHHHHHHHHHHH
Q 045249 140 EYLKAMKKLKGKVEM 154 (211)
Q Consensus 140 ~L~~~Le~~l~~V~~ 154 (211)
.....+......+..
T Consensus 80 ~~~~~l~~~~~~l~~ 94 (158)
T PF03938_consen 80 KRQQELQQKEQELQQ 94 (158)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666665555544
No 24
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=58.84 E-value=81 Score=24.23 Aligned_cols=57 Identities=19% Similarity=0.177 Sum_probs=37.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 045249 85 VQQHNKEYEDAMQELEKEKKRGKMIEEEKKKNKSNGRFWWQEGNIIDDMGIEELEEYLKAMKKLKGKVEMRVNE 158 (211)
Q Consensus 85 ~~~l~~~~~~l~~el~k~kk~~~~l~~~~~~~~~~~~~~~~~G~~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~ 158 (211)
...+...+..|..+++.+..+++.++ . .-...+.+|...+........+..+.|+..
T Consensus 111 ~~el~~~i~~l~~e~~~l~~kL~~l~---~--------------~~~~vs~ee~~~~~~~~~~~~k~w~kRKri 167 (169)
T PF07106_consen 111 NEELREEIEELEEEIEELEEKLEKLR---S--------------GSKPVSPEEKEKLEKEYKKWRKEWKKRKRI 167 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---h--------------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555444333 1 223388999999999999999999988754
No 25
>PF09151 DUF1936: Domain of unknown function (DUF1936); InterPro: IPR015234 This domain is found in a set of hypothetical archaeal proteins. Its exact function has not, as yet, been defined. ; PDB: 2QH1_B 1PVM_B.
Probab=58.33 E-value=7.9 Score=21.32 Aligned_cols=27 Identities=33% Similarity=0.613 Sum_probs=18.7
Q ss_pred HhhhhccceEEEEeCCCCccccc--CCCc
Q 045249 34 LCVLCGAEVGIIVFSPNGKIFLA--GHPD 60 (211)
Q Consensus 34 Ls~LC~veva~ivfsp~gk~~~f--~~ps 60 (211)
||--|||-|-+-||...|..-.| +.|.
T Consensus 3 lcpkcgvgvl~pvy~~kgeikvfrcsnpa 31 (36)
T PF09151_consen 3 LCPKCGVGVLEPVYNQKGEIKVFRCSNPA 31 (36)
T ss_dssp B-TTTSSSBEEEEE-TTS-EEEEEES-TT
T ss_pred cCCccCceEEEEeecCCCcEEEEEcCCCc
Confidence 67789999999999999976555 5553
No 26
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=55.06 E-value=1.5e+02 Score=26.30 Aligned_cols=12 Identities=17% Similarity=0.360 Sum_probs=5.1
Q ss_pred CchhhHHHHhhh
Q 045249 59 PDFDKILNRYLD 70 (211)
Q Consensus 59 psv~~Vl~ry~~ 70 (211)
|.+..|-.....
T Consensus 263 ~el~siRr~Cd~ 274 (442)
T PF06637_consen 263 PELESIRRTCDH 274 (442)
T ss_pred chHHHHHHHHhh
Confidence 344444444333
No 27
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.24 E-value=99 Score=26.05 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045249 135 IEELEEYLKAMKKLKGKVEMRVNEIMM 161 (211)
Q Consensus 135 ~eeL~~L~~~Le~~l~~V~~R~~~L~~ 161 (211)
-.++..|...|+.+-.+|++|.+-|-.
T Consensus 79 ~~eik~l~~eI~~~~~~I~~r~~~l~~ 105 (265)
T COG3883 79 KAEIKKLQKEIAELKENIVERQELLKK 105 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777777665543
No 28
>KOG0432 consensus Valyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=53.19 E-value=36 Score=33.43 Aligned_cols=24 Identities=21% Similarity=0.248 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Q 045249 90 KEYEDAMQELEKEKKRGKMIEEEK 113 (211)
Q Consensus 90 ~~~~~l~~el~k~kk~~~~l~~~~ 113 (211)
.++.+|.+++++++++.+.+...+
T Consensus 930 ~e~~kl~kkl~klqk~~~~l~~r~ 953 (995)
T KOG0432|consen 930 SEIQKLAKKLEKLQKQLDKLQARI 953 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556666666666666666665444
No 29
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=51.46 E-value=1.2e+02 Score=23.98 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=14.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045249 133 MGIEELEEYLKAMKKLKGKVEMRVNEIM 160 (211)
Q Consensus 133 Ls~eeL~~L~~~Le~~l~~V~~R~~~L~ 160 (211)
|+.+|++.=...|.+-....++|+..+.
T Consensus 116 Lt~eemQe~i~~L~kev~~~~erl~~~k 143 (201)
T KOG4603|consen 116 LTTEEMQEEIQELKKEVAGYRERLKNIK 143 (201)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555555554443
No 30
>PRK01919 tatB sec-independent translocase; Provisional
Probab=51.04 E-value=1.2e+02 Score=23.76 Aligned_cols=11 Identities=27% Similarity=0.607 Sum_probs=9.1
Q ss_pred eEEEEeCCCCc
Q 045249 42 VGIIVFSPNGK 52 (211)
Q Consensus 42 va~ivfsp~gk 52 (211)
||+|||+|..=
T Consensus 15 VALiV~GPekL 25 (169)
T PRK01919 15 VALVVIGPERL 25 (169)
T ss_pred HHHheeCchHh
Confidence 78999999763
No 31
>PF11944 DUF3461: Protein of unknown function (DUF3461); InterPro: IPR020911 This entry describes proteins of unknown function.
Probab=50.53 E-value=86 Score=23.16 Aligned_cols=25 Identities=12% Similarity=0.333 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 045249 135 IEELEEYLKAMKKLKGKVEMRVNEI 159 (211)
Q Consensus 135 ~eeL~~L~~~Le~~l~~V~~R~~~L 159 (211)
++||.-|+..+..++..|++.++.|
T Consensus 101 L~dL~HLE~Vv~~KIaEIe~dlekL 125 (125)
T PF11944_consen 101 LDDLRHLEKVVNSKIAEIERDLEKL 125 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7899999999999999999988764
No 32
>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]
Probab=50.37 E-value=46 Score=25.34 Aligned_cols=35 Identities=14% Similarity=0.176 Sum_probs=28.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045249 127 GNIIDDMGIEELEEYLKAMKKLKGKVEMRVNEIMM 161 (211)
Q Consensus 127 G~~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~L~~ 161 (211)
+-++..||+++|..+...+|.-+.-+..-...|.+
T Consensus 7 ~idltkLsleQL~~lk~q~dqEl~~lq~Sl~~L~~ 41 (153)
T KOG3048|consen 7 GIDLTKLSLEQLGALKKQFDQELNFLQDSLNALKG 41 (153)
T ss_pred CCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44899999999999999998888877766666654
No 33
>PRK04098 sec-independent translocase; Provisional
Probab=49.27 E-value=49 Score=25.58 Aligned_cols=28 Identities=11% Similarity=0.166 Sum_probs=18.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045249 133 MGIEELEEYLKAMKKLKGKVEMRVNEIM 160 (211)
Q Consensus 133 Ls~eeL~~L~~~Le~~l~~V~~R~~~L~ 160 (211)
+++++|.++...+....+.+..-+..+.
T Consensus 81 ~~~eel~~~~~~~~~~~~~~~~~~~~~~ 108 (158)
T PRK04098 81 LKFEELDDLKITAENEIKSIQDLLQDYK 108 (158)
T ss_pred cChHHHHHHhhhhhhcchhHHHHHhhhh
Confidence 6788888887666665555555554443
No 34
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=47.83 E-value=1.7e+02 Score=24.61 Aligned_cols=63 Identities=10% Similarity=0.158 Sum_probs=46.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCccccccCCCCCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045249 85 VQQHNKEYEDAMQELEKEKKRGKMIEEEKKKNKSNGRFWWQEGNIIDDMG---IEELEEYLKAMKKLKGKVEMRVNEIM 160 (211)
Q Consensus 85 ~~~l~~~~~~l~~el~k~kk~~~~l~~~~~~~~~~~~~~~~~G~~l~~Ls---~eeL~~L~~~Le~~l~~V~~R~~~L~ 160 (211)
...|.++-..|+.+++++.++.+.+++.++. ++.+-| ..-++.|...|--.|..+-.-.++|.
T Consensus 6 L~eL~qrk~~Lq~eIe~LerR~~ri~~Emrt-------------sFaG~Sq~lA~RVqGFkdYLvGsLQDLa~saEqLe 71 (283)
T PF11285_consen 6 LKELEQRKQALQIEIEQLERRRERIEKEMRT-------------SFAGQSQDLAIRVQGFKDYLVGSLQDLAQSAEQLE 71 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-------------ccccchHHHHHHHhhhHHHHHHHHHHHHHHHHhhc
Confidence 4567788888888999998888888755554 333333 34567788888888888888888883
No 35
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=47.30 E-value=49 Score=27.50 Aligned_cols=62 Identities=19% Similarity=0.132 Sum_probs=31.8
Q ss_pred ccceEEEE-eCCCCcccccCCCchhhHHHHhhhcCCCCcccccCccchhhhhHHHHHHHHHHHHHHHHhHHHH
Q 045249 39 GAEVGIIV-FSPNGKIFLAGHPDFDKILNRYLDQNHSSLDEVNTIPCVQQHNKEYEDAMQELEKEKKRGKMIE 110 (211)
Q Consensus 39 ~veva~iv-fsp~gk~~~f~~psv~~Vl~ry~~~~~~~~~~~~~~~~~~~l~~~~~~l~~el~k~kk~~~~l~ 110 (211)
|+++++++ +|....|..-+.-++-.++++-.+.+ -..+.|.++-+.+..+++++.++.++..
T Consensus 169 ~i~a~~ll~et~~~~PDP~AAa~vve~lnk~~~l~----------V~td~L~keAe~i~~~lekl~eq~~~~~ 231 (244)
T COG1938 169 GIPALVLLAETFGDRPDPRAAARVVEALNKMLGLN----------VDTDKLEKEAEEIEEQLEKLAEQLEKEE 231 (244)
T ss_pred CCCeEEEeccccCCCCChHHHHHHHHHHHHHhcCc----------cCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444333 44444342222223334666665544 2355667777777777777665554443
No 36
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.14 E-value=1.1e+02 Score=25.62 Aligned_cols=60 Identities=15% Similarity=0.178 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhcccCCccccccCCCCCCCCHH-HHH-HHHHHHHHHHHHHHHHHHHHH
Q 045249 91 EYEDAMQELEKEKKRGKMIEEEKKKNKSNGRFWWQEGNIIDDMGIE-ELE-EYLKAMKKLKGKVEMRVNEIM 160 (211)
Q Consensus 91 ~~~~l~~el~k~kk~~~~l~~~~~~~~~~~~~~~~~G~~l~~Ls~e-eL~-~L~~~Le~~l~~V~~R~~~L~ 160 (211)
.+++|++++..+++.+.+-.++.-+ ....|.+|..+ |-+ +++..=.+....+..+++.++
T Consensus 226 ~i~~lkeeia~Lkk~L~qkdq~ile----------KdkqisnLKad~e~~~~~ek~Hke~v~qL~~k~~~~l 287 (305)
T KOG3990|consen 226 KIQKLKEEIARLKKLLHQKDQLILE----------KDKQISNLKADKEYQKELEKKHKERVQQLQKKKEESL 287 (305)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHh----------hhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777776555433322 24477777775 322 233333333334444444444
No 37
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=47.11 E-value=88 Score=21.15 Aligned_cols=67 Identities=19% Similarity=0.229 Sum_probs=40.7
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCccccccCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 045249 87 QHNKEYEDAMQELEKEKKRGKMIEEEKKKNKSNGRFWWQEGNIID-DMGIEELEEYLKAMKKLKGKVEMRVNEIMMN 162 (211)
Q Consensus 87 ~l~~~~~~l~~el~k~kk~~~~l~~~~~~~~~~~~~~~~~G~~l~-~Ls~eeL~~L~~~Le~~l~~V~~R~~~L~~~ 162 (211)
.|..+++.+...+...+....++..+...... . ... .=.-++|..+...+......++.++..|-..
T Consensus 4 ~f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~-------~--~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~ 71 (103)
T PF00804_consen 4 EFFDEVQEIREDIDKIKEKLNELRKLHKKILS-------S--PDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKD 71 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------C--CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777777766654101 0 111 1124566677777777777777777777654
No 38
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=45.98 E-value=61 Score=28.53 Aligned_cols=34 Identities=18% Similarity=0.167 Sum_probs=21.5
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 045249 82 IPCVQQHNKEYEDAMQELEKEKKRGKMIEEEKKK 115 (211)
Q Consensus 82 ~~~~~~l~~~~~~l~~el~k~kk~~~~l~~~~~~ 115 (211)
...+.++|++++.+..+....+.+..++++..++
T Consensus 258 ~sREk~iN~qle~l~~eYr~~~~~ls~~~~~y~~ 291 (359)
T PF10498_consen 258 ESREKYINNQLEPLIQEYRSAQDELSEVQEKYKQ 291 (359)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777776666666655544433
No 39
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=45.85 E-value=1.1e+02 Score=21.92 Aligned_cols=29 Identities=14% Similarity=0.153 Sum_probs=25.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045249 131 DDMGIEELEEYLKAMKKLKGKVEMRVNEI 159 (211)
Q Consensus 131 ~~Ls~eeL~~L~~~Le~~l~~V~~R~~~L 159 (211)
.+++-+++..|...++..|+.++.|+...
T Consensus 32 g~~a~~e~~~lR~r~~~~Lk~~r~rl~~~ 60 (104)
T COG4575 32 GSLAGDEAEELRSKAESALKEARDRLGDT 60 (104)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45678999999999999999999998766
No 40
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=45.32 E-value=1.3e+02 Score=22.50 Aligned_cols=28 Identities=29% Similarity=0.464 Sum_probs=21.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 045249 129 IIDDMGIEELEEYLKAMKKLKGKVEMRV 156 (211)
Q Consensus 129 ~l~~Ls~eeL~~L~~~Le~~l~~V~~R~ 156 (211)
.++.|+.+.|..|..+|++-...+...+
T Consensus 47 ~ye~Ms~~~l~~llkqLEkeK~~Le~ql 74 (129)
T PF15372_consen 47 RYEQMSVESLNQLLKQLEKEKRSLENQL 74 (129)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3478899999999999998777664433
No 41
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=42.98 E-value=72 Score=28.93 Aligned_cols=44 Identities=14% Similarity=0.287 Sum_probs=29.5
Q ss_pred hhhhhHHHHHHHHhhhhccceEEEEeCCCCcccccCCCchhhHHHHhhh
Q 045249 22 KRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPDFDKILNRYLD 70 (211)
Q Consensus 22 KRr~GL~KKa~ELs~LC~veva~ivfsp~gk~~~f~~psv~~Vl~ry~~ 70 (211)
.--.+|+|+- .|.+- .-+-+++|+++|++..| .++.+||+.|..
T Consensus 282 ~~~~~L~k~~-~L~~~--~~~Nm~~~d~~g~~~~~--~~~~~Il~~f~~ 325 (439)
T PHA02592 282 ATHEKIMKDF-GLIER--VSQNITVINENGKLKVY--ENAEDLIRDFVE 325 (439)
T ss_pred HHHHHHHHhc-Cchhe--eeeeEEEEecCCeeeec--CCHHHHHHHHHH
Confidence 3445677653 33332 24778899999988777 457788988865
No 42
>PF09941 DUF2173: Uncharacterized conserved protein (DUF2173); InterPro: IPR018685 This family of various hypothetical prokaryotic proteins has no known function.
Probab=42.96 E-value=25 Score=25.43 Aligned_cols=38 Identities=26% Similarity=0.355 Sum_probs=26.2
Q ss_pred HHHHHhhhhccceEEEEeCCCCccccc-CC--CchhhHHHHh
Q 045249 30 KAMELCVLCGAEVGIIVFSPNGKIFLA-GH--PDFDKILNRY 68 (211)
Q Consensus 30 Ka~ELs~LC~veva~ivfsp~gk~~~f-~~--psv~~Vl~ry 68 (211)
|..+|..|-||-+| ..||++|++.+| |. +..-+++.++
T Consensus 2 ~l~~Lm~lpGv~AA-g~Fs~~G~l~e~~G~l~~~~a~m~A~m 42 (108)
T PF09941_consen 2 KLDKLMKLPGVVAA-GEFSDDGKLVEYKGELDEEMAEMLAKM 42 (108)
T ss_pred cHHHhhcCCCeEEE-EEECCCCeEEeeecCCCHHHHHHHHHH
Confidence 35688888898655 899999998877 42 3334444444
No 43
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=42.46 E-value=1.2e+02 Score=21.28 Aligned_cols=23 Identities=17% Similarity=0.378 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 045249 135 IEELEEYLKAMKKLKGKVEMRVN 157 (211)
Q Consensus 135 ~eeL~~L~~~Le~~l~~V~~R~~ 157 (211)
+.+|.+....||..-+.+..|..
T Consensus 75 V~~LE~~v~~LD~ysk~LE~k~k 97 (99)
T PF10046_consen 75 VTELEQTVYELDEYSKELESKFK 97 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Confidence 45555555556665555555543
No 44
>PF00843 Arena_nucleocap: Arenavirus nucleocapsid protein; InterPro: IPR000229 Arenaviruses are single stranded RNA viruses. The arenavirus S RNAs that have been characterised include conserved terminal sequences, an ambisense arrangement of the coding regions for the precursor glycoprotein (GPC) and nucleocapsid (N) proteins and an intergenic region capable of forming a base-paired "hairpin" structure. The mature glycoproteins that result are G1 and G2 and the N protein []. This family represents the nucleocapsid protein that encapsulates the viral ssRNA [].; GO: 0019013 viral nucleocapsid; PDB: 3MX5_A 3MX2_C 3MWT_C 3Q7C_A 3MWP_B 3Q7B_A 3T5Q_E 3T5N_A 3R3L_B.
Probab=42.00 E-value=30 Score=31.20 Aligned_cols=54 Identities=20% Similarity=0.278 Sum_probs=33.2
Q ss_pred HHHHHHHHHhHHHHHHHHhcccCCccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 045249 97 QELEKEKKRGKMIEEEKKKNKSNGRFWWQEGNIIDDMGIEELEEYLKAMKKLKGKVEM 154 (211)
Q Consensus 97 ~el~k~kk~~~~l~~~~~~~~~~~~~~~~~G~~l~~Ls~eeL~~L~~~Le~~l~~V~~ 154 (211)
..|.+++.-|+++..+...-..+...-. .+.+|+-+||.+|..-||++.+.|..
T Consensus 59 ~DL~~LRDlNk~Vd~Lm~mkS~Q~~~vl----kvG~LskdeLm~LasDLeKLk~Kv~r 112 (533)
T PF00843_consen 59 SDLTRLRDLNKEVDNLMEMKSTQKNNVL----KVGDLSKDELMELASDLEKLKKKVQR 112 (533)
T ss_dssp HHHHHHHHHHHHHHHH-S-B-B---EEE----EBTTB-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcccceE----EecCcCHHHHHHHHHHHHHHHHHHhc
Confidence 3455666666666655433111222222 67999999999999999999988843
No 45
>PHA03162 hypothetical protein; Provisional
Probab=40.28 E-value=1.6e+02 Score=22.09 Aligned_cols=56 Identities=16% Similarity=0.073 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhcccCCccccccCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 045249 92 YEDAMQELEKEKKRGKMIEEEKKKNKSNGRFWWQEGNIIDDMGIEELEEYLKAMKKLKGKV 152 (211)
Q Consensus 92 ~~~l~~el~k~kk~~~~l~~~~~~~~~~~~~~~~~G~~l~~Ls~eeL~~L~~~Le~~l~~V 152 (211)
+++|.++|.+++-+|..|++..+. ..... --.| -..|+..|=+.+..+.-..+...
T Consensus 15 mEeLaaeL~kLqmENK~LKkkl~~--~~~~~-~~p~--d~~LTp~qKea~I~s~v~~Lts~ 70 (135)
T PHA03162 15 MEDLAAEIAKLQLENKALKKKIKE--GTDDD-PLPG--DPILTPAAKEAMIGAATAALTRQ 70 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--ccCCC-CCCC--CccCCHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777644444 11110 0011 23489999888887776666553
No 46
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=40.16 E-value=66 Score=20.93 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=15.1
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHH
Q 045249 87 QHNKEYEDAMQELEKEKKRGKMIE 110 (211)
Q Consensus 87 ~l~~~~~~l~~el~k~kk~~~~l~ 110 (211)
.+++++..++.+++.++.++++++
T Consensus 21 ~~~~ei~~l~~~i~~l~~e~~~L~ 44 (80)
T PF04977_consen 21 QLNQEIAELQKEIEELKKENEELK 44 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666555
No 47
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=39.71 E-value=89 Score=21.42 Aligned_cols=16 Identities=50% Similarity=0.711 Sum_probs=11.3
Q ss_pred CCCHHHHHHHHHHHHH
Q 045249 132 DMGIEELEEYLKAMKK 147 (211)
Q Consensus 132 ~Ls~eeL~~L~~~Le~ 147 (211)
.|+.++|..|......
T Consensus 47 ~mtp~eL~~~L~~~~~ 62 (83)
T PF14193_consen 47 KMTPEELAAFLRAMKS 62 (83)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 4688888877766544
No 48
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=39.20 E-value=1.8e+02 Score=22.54 Aligned_cols=26 Identities=31% Similarity=0.261 Sum_probs=14.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHH
Q 045249 85 VQQHNKEYEDAMQELEKEKKRGKMIE 110 (211)
Q Consensus 85 ~~~l~~~~~~l~~el~k~kk~~~~l~ 110 (211)
...+..+...++.++.+++.+++.|+
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e~Le 124 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNEELE 124 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555555554
No 49
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=38.09 E-value=1.3e+02 Score=20.35 Aligned_cols=61 Identities=13% Similarity=0.251 Sum_probs=41.9
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045249 87 QHNKEYEDAMQELEKEKKRGKMIEEEKKKNKSNGRFWWQEGNIIDDMGIEELEEYLKAMKKLKGKVEMRVNEIM 160 (211)
Q Consensus 87 ~l~~~~~~l~~el~k~kk~~~~l~~~~~~~~~~~~~~~~~G~~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~L~ 160 (211)
.|..-+..|++++..++-.-.++....+. --..++...-..|+..|+.+++.+..+-+++.
T Consensus 14 ~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~-------------~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~ 74 (79)
T PF06657_consen 14 ALSEVLKALQDEFGHMKMEHQELQDEYKQ-------------MDPSLGRRKRRDLEQELEELVKRMEAKADQIY 74 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh-------------cccccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666667777666665555433333 11356788888999999999999988887764
No 50
>KOG3718 consensus Carnitine O-acyltransferase CROT [Lipid transport and metabolism]
Probab=37.75 E-value=54 Score=30.05 Aligned_cols=27 Identities=22% Similarity=0.389 Sum_probs=22.0
Q ss_pred EeCCCCcccccCCCchhhHHHHhhhcC
Q 045249 46 VFSPNGKIFLAGHPDFDKILNRYLDQN 72 (211)
Q Consensus 46 vfsp~gk~~~f~~psv~~Vl~ry~~~~ 72 (211)
.||-.+.+.+-+=|+.++.|+||.+.-
T Consensus 13 TFs~qdsLPSLPlPeLeETleKYl~s~ 39 (609)
T KOG3718|consen 13 TFSFQDSLPSLPLPELEETLEKYLSSI 39 (609)
T ss_pred cccccccCCCCCCchHHHHHHHHHHhc
Confidence 366677777788899999999998855
No 51
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=37.71 E-value=90 Score=19.49 Aligned_cols=24 Identities=8% Similarity=0.153 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 045249 137 ELEEYLKAMKKLKGKVEMRVNEIM 160 (211)
Q Consensus 137 eL~~L~~~Le~~l~~V~~R~~~L~ 160 (211)
........+...++.|.+|+..|.
T Consensus 33 ~~~~~~~~l~~~~~~i~~~i~~L~ 56 (65)
T PF09278_consen 33 PCADRRALLEEKLEEIEEQIAELQ 56 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445778888888888888775
No 52
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=37.46 E-value=2.1e+02 Score=24.71 Aligned_cols=31 Identities=23% Similarity=0.399 Sum_probs=24.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045249 129 IIDDMGIEELEEYLKAMKKLKGKVEMRVNEI 159 (211)
Q Consensus 129 ~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~L 159 (211)
.+++++.++|..+...|......+......+
T Consensus 197 e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l 227 (312)
T smart00787 197 ELEDCDPTELDRAKEKLKKLLQEIMIKVKKL 227 (312)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788999999999988888777776655544
No 53
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=37.31 E-value=2.5e+02 Score=25.81 Aligned_cols=28 Identities=18% Similarity=0.304 Sum_probs=18.0
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHhHHHH
Q 045249 83 PCVQQHNKEYEDAMQELEKEKKRGKMIE 110 (211)
Q Consensus 83 ~~~~~l~~~~~~l~~el~k~kk~~~~l~ 110 (211)
..+..+..++..++.++...+.+...++
T Consensus 71 ~~~~~l~~~l~~l~~~~~~~~~~~~~~~ 98 (525)
T TIGR02231 71 ERLAELRKQIRELEAELRDLEDRGDALK 98 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777776666554444
No 54
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=37.17 E-value=53 Score=30.72 Aligned_cols=17 Identities=18% Similarity=0.231 Sum_probs=8.4
Q ss_pred hhccceEEEEeCCCCccc
Q 045249 37 LCGAEVGIIVFSPNGKIF 54 (211)
Q Consensus 37 LC~veva~ivfsp~gk~~ 54 (211)
|-|+.+.+.... .|+.|
T Consensus 103 l~g~~v~l~R~~-~G~~~ 119 (555)
T TIGR03545 103 IEGLAFGTERST-SGAVP 119 (555)
T ss_pred EecCEEEEEEcc-CCCCC
Confidence 346666654444 34444
No 55
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=37.05 E-value=3.4e+02 Score=27.54 Aligned_cols=18 Identities=22% Similarity=0.445 Sum_probs=10.5
Q ss_pred eEEEEeCCCCcccccCCC
Q 045249 42 VGIIVFSPNGKIFLAGHP 59 (211)
Q Consensus 42 va~ivfsp~gk~~~f~~p 59 (211)
=|.-+|.++|.---|+.|
T Consensus 620 n~~~aytldg~~~~~~g~ 637 (1074)
T KOG0250|consen 620 NVTKAYTLDGRQIFAGGP 637 (1074)
T ss_pred cceeeeccCccccccCCC
Confidence 345678888764434444
No 56
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=36.89 E-value=1.1e+02 Score=19.54 Aligned_cols=22 Identities=36% Similarity=0.351 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH
Q 045249 90 KEYEDAMQELEKEKKRGKMIEE 111 (211)
Q Consensus 90 ~~~~~l~~el~k~kk~~~~l~~ 111 (211)
.++.+|..+++++++....+..
T Consensus 4 ~E~~rL~Kel~kl~~~i~~~~~ 25 (66)
T PF10458_consen 4 AEIERLEKELEKLEKEIERLEK 25 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666665555543
No 57
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=36.74 E-value=66 Score=24.00 Aligned_cols=57 Identities=16% Similarity=0.249 Sum_probs=25.7
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCccccccCCCCCCCCHHHHHHHHHHHHHHHH
Q 045249 83 PCVQQHNKEYEDAMQELEKEKKRGKMIEEEKKKNKSNGRFWWQEGNIIDDMGIEELEEYLKAMKKLKG 150 (211)
Q Consensus 83 ~~~~~l~~~~~~l~~el~k~kk~~~~l~~~~~~~~~~~~~~~~~G~~l~~Ls~eeL~~L~~~Le~~l~ 150 (211)
+++..|-++|.++++ ..++-++++.+.+.- |-...+.+|+|+.+-. .|+..|.++..
T Consensus 6 P~iE~LInrInelQQ---aKKk~~EELgEa~~l-------~eaL~~ELDsL~~Ekv-hLeeilnkKqe 62 (134)
T PF15233_consen 6 PQIEDLINRINELQQ---AKKKSSEELGEAQAL-------WEALQRELDSLNGEKV-HLEEILNKKQE 62 (134)
T ss_pred chHHHHHHHHHHHHH---HHHHhHHHHHHHHHH-------HHHHHHHHHHHhhhHH-HHHHHHHHHHH
Confidence 455566666666654 112223334322211 2122336666666555 45554444433
No 58
>PRK11239 hypothetical protein; Provisional
Probab=36.69 E-value=55 Score=26.59 Aligned_cols=61 Identities=13% Similarity=0.203 Sum_probs=38.6
Q ss_pred CCccchhhhhhhhhh-----HHHHHHHHhhhh-----ccceEEEEeCCCCcccccCC-CchhhHHHHhhhcC
Q 045249 12 DKNSLQVTFSKRRSG-----LFSKAMELCVLC-----GAEVGIIVFSPNGKIFLAGH-PDFDKILNRYLDQN 72 (211)
Q Consensus 12 n~~~R~vTF~KRr~G-----L~KKa~ELs~LC-----~veva~ivfsp~gk~~~f~~-psv~~Vl~ry~~~~ 72 (211)
...+|-+-|.-|-.- |-=-..|+++|| |.+.+-=+-+-+++++.|.. .+|+.++++.....
T Consensus 73 ~~gsRv~Ky~Hr~~~~ef~~l~l~~~~~All~~LlLRGPQT~gELRtRs~Rl~~F~dv~~Ve~~L~~L~~r~ 144 (215)
T PRK11239 73 GFGNRVTKYEQRFCNSEFGDLKLSAAEVALITTLLLRGAQTPGELRSRAARMYEFSDMAEVESTLEQLANRE 144 (215)
T ss_pred CCCcchHHHHHhcccccccccCCCHHHHHHHHHHHhcCCCChHHHHHhHhcCCcCCCHHHHHHHHHHHHhcc
Confidence 345677777766552 444567888888 22322222333468999976 67888888886653
No 59
>TIGR01916 F420_cofE F420-0:gamma-glutamyl ligase. This model represents an enzyme of coenzyme F(420) biosynthesis, as catalyzed by MJ0768 of Methanococcus jannaschii and by the N-terminal half of FbiB of Mycobacterium bovis strain BCG. Note that only two glutamates are ligated in M. jannaschii, but five to six in the Mycobacterium lineage. In M. jannaschii, CofE catalyzes the GTP-dependent addition of two L-glutamates.
Probab=36.38 E-value=42 Score=27.90 Aligned_cols=28 Identities=36% Similarity=0.619 Sum_probs=23.3
Q ss_pred HHhhhhccceEEEEeCCCCcccccCCCc
Q 045249 33 ELCVLCGAEVGIIVFSPNGKIFLAGHPD 60 (211)
Q Consensus 33 ELs~LC~veva~ivfsp~gk~~~f~~ps 60 (211)
+|.-.+|++|+|||+.+.|+++--|.+.
T Consensus 134 ~l~~~~g~~v~VIItDt~gr~~R~G~~g 161 (243)
T TIGR01916 134 GLRELTGVDVGVIITDTNGRPFREGQVG 161 (243)
T ss_pred HHHHHHCCCEEEEEECCCCCccccCCCC
Confidence 5667899999999999999987776653
No 60
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=35.94 E-value=53 Score=29.81 Aligned_cols=25 Identities=32% Similarity=0.719 Sum_probs=21.0
Q ss_pred EEEEeCCCCcccccCCCchhhHHHHhhh
Q 045249 43 GIIVFSPNGKIFLAGHPDFDKILNRYLD 70 (211)
Q Consensus 43 a~ivfsp~gk~~~f~~psv~~Vl~ry~~ 70 (211)
-+++|.++|++-.| ++.+||+.|..
T Consensus 302 Nm~~~~~~g~p~~~---~l~~iL~~f~~ 326 (445)
T cd00187 302 NMVAFDPNGRPKKL---NLKEILQEFLD 326 (445)
T ss_pred eEEEEecCCeeEEe---CHHHHHHHHHH
Confidence 67888889988877 78899999976
No 61
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=35.89 E-value=3.5e+02 Score=24.83 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=14.5
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhHHHH
Q 045249 84 CVQQHNKEYEDAMQELEKEKKRGKMIE 110 (211)
Q Consensus 84 ~~~~l~~~~~~l~~el~k~kk~~~~l~ 110 (211)
++..++.++..+..+-+.++++|+.|+
T Consensus 67 ~~k~~r~~~~~l~~~N~~l~~eN~~L~ 93 (472)
T TIGR03752 67 EVKELRKRLAKLISENEALKAENERLQ 93 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555554
No 62
>PRK14625 hypothetical protein; Provisional
Probab=35.72 E-value=1.1e+02 Score=22.12 Aligned_cols=31 Identities=6% Similarity=-0.047 Sum_probs=18.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 045249 133 MGIEELEEYLKAMKKLKGKVEMRVNEIMMNG 163 (211)
Q Consensus 133 Ls~eeL~~L~~~Le~~l~~V~~R~~~L~~~~ 163 (211)
|+.+|..-|+..|-...+....++++...+.
T Consensus 59 l~~eD~e~LeDLI~aA~NdA~~k~~~~~~~~ 89 (109)
T PRK14625 59 VQPGEGEVIADLIVAAHADAKKKLDAKQAQL 89 (109)
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666666666666666655554444
No 63
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=35.48 E-value=67 Score=27.34 Aligned_cols=44 Identities=16% Similarity=0.365 Sum_probs=30.3
Q ss_pred eeEEcCCCccchhhhhhhhhhHHHHHHHHhhhhccceEEEEeCCCCccccc-CCCchhhHHHHhhh
Q 045249 6 QIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLA-GHPDFDKILNRYLD 70 (211)
Q Consensus 6 ~i~~I~n~~~R~vTF~KRr~GL~KKa~ELs~LC~veva~ivfsp~gk~~~f-~~psv~~Vl~ry~~ 70 (211)
.+.+|.|.+.|..+=+ | .||..|.+ |.| .| .-|.+++|++.|..
T Consensus 25 n~~li~n~tqr~t~~s-R------------~L~Ecel~---~~p-----~Y~nDpEmK~iid~~n~ 69 (295)
T TIGR01478 25 NVSYIQNNTQMTSTKS-R------------LLAEIQRP---KNP-----HYHNDPELKEIIDKLNE 69 (295)
T ss_pred ceecccCccccccccc-e------------ehhhhccc---cCC-----CCCCcHHHHHHHHHHhH
Confidence 3567888888776622 2 47776665 443 34 56899999999965
No 64
>COG4052 Uncharacterized protein related to methyl coenzyme M reductase subunit C [General function prediction only]
Probab=35.44 E-value=71 Score=26.52 Aligned_cols=40 Identities=30% Similarity=0.365 Sum_probs=27.6
Q ss_pred HHHHHHHH------hhhhccceEEEEeCCCCcccccCCCc--hhhHHHHh
Q 045249 27 LFSKAMEL------CVLCGAEVGIIVFSPNGKIFLAGHPD--FDKILNRY 68 (211)
Q Consensus 27 L~KKa~EL------s~LC~veva~ivfsp~gk~~~f~~ps--v~~Vl~ry 68 (211)
+.+||.|| +-|.|.++|+| ||+=.-+..+|+. +..-+.||
T Consensus 54 vk~~A~ellG~i~~aPlaGtEIAvV--sptLarHHlPHsaCDiaEYLRr~ 101 (310)
T COG4052 54 VKEKAGELLGKIIEAPLAGTEIAVV--SPTLARHHLPHSACDIAEYLRRP 101 (310)
T ss_pred HHHHHHHhhhhheecccCCceEEEe--ccchhhccCCCchhhHHHHHhcc
Confidence 56788888 78999999965 6766556666662 44445555
No 65
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=35.33 E-value=2.6e+02 Score=24.04 Aligned_cols=31 Identities=26% Similarity=0.385 Sum_probs=23.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045249 129 IIDDMGIEELEEYLKAMKKLKGKVEMRVNEI 159 (211)
Q Consensus 129 ~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~L 159 (211)
.++.++.++|..+...|...-..|..+...+
T Consensus 202 e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l 232 (325)
T PF08317_consen 202 EIESCDQEELEALRQELAEQKEEIEAKKKEL 232 (325)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788889999988888887777776554444
No 66
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=35.21 E-value=1.2e+02 Score=28.43 Aligned_cols=33 Identities=18% Similarity=0.229 Sum_probs=18.9
Q ss_pred CccchhhhhHHHHHHHHHHHHHHHHhHHHHHHH
Q 045249 81 TIPCVQQHNKEYEDAMQELEKEKKRGKMIEEEK 113 (211)
Q Consensus 81 ~~~~~~~l~~~~~~l~~el~k~kk~~~~l~~~~ 113 (211)
+...+..+..+++.-..|++++++.+.+|+...
T Consensus 292 ~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~I 324 (581)
T KOG0995|consen 292 MEKKLEMLKSEIEEKEEEIEKLQKENDELKKQI 324 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666666666666666665333
No 67
>PF13591 MerR_2: MerR HTH family regulatory protein
Probab=35.00 E-value=33 Score=23.30 Aligned_cols=15 Identities=33% Similarity=0.731 Sum_probs=11.4
Q ss_pred HHHHhhhhccceEEE
Q 045249 31 AMELCVLCGAEVGII 45 (211)
Q Consensus 31 a~ELs~LC~veva~i 45 (211)
..|+|..||++...|
T Consensus 3 ~~e~~~~~~i~~~~l 17 (84)
T PF13591_consen 3 LEEFCEACGIEPEFL 17 (84)
T ss_pred HHHHHHHHCcCHHHH
Confidence 468999999876544
No 68
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=34.87 E-value=1.8e+02 Score=21.31 Aligned_cols=57 Identities=14% Similarity=0.085 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhcccCCccccccCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 045249 91 EYEDAMQELEKEKKRGKMIEEEKKKNKSNGRFWWQEGNIIDDMGIEELEEYLKAMKKLKGKV 152 (211)
Q Consensus 91 ~~~~l~~el~k~kk~~~~l~~~~~~~~~~~~~~~~~G~~l~~Ls~eeL~~L~~~Le~~l~~V 152 (211)
.+++|.++|.+++-+|..|+..... ..+ .- .+-+-.-|+..|=+.+..+.-..+...
T Consensus 4 t~EeLaaeL~kLqmENk~LKkkl~~--~~~-p~--~~p~~~~LTp~qKe~~I~s~~~~Lss~ 60 (118)
T PF05812_consen 4 TMEELAAELQKLQMENKALKKKLRQ--SVG-PG--PSPDDEVLTPAQKEAMITSAVSKLSSQ 60 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--TT------S-TT--B--HHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHc--cCC-CC--CCCCccccChHHHHHHHHHHHHHHHHH
Confidence 4677888888888888888755554 111 00 012556799999888888777666554
No 69
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=34.67 E-value=33 Score=24.25 Aligned_cols=15 Identities=20% Similarity=0.432 Sum_probs=11.3
Q ss_pred HHHHhhhhccceEEE
Q 045249 31 AMELCVLCGAEVGII 45 (211)
Q Consensus 31 a~ELs~LC~veva~i 45 (211)
..|||..||++...|
T Consensus 10 ~~Elc~~~gi~~~~l 24 (101)
T PRK10265 10 ITEFCLHTGVSEEEL 24 (101)
T ss_pred HHHHHHHHCcCHHHH
Confidence 478999999876544
No 70
>PF05549 Allexi_40kDa: Allexivirus 40kDa protein; InterPro: IPR008398 This family of sequences contains the 40 kDa polypeptides from garlic viruses (Allexiviruses), which do not resemble any other plant virus gene products reported so far []. Rod-shaped flexuous viruses have been isolated from garlic plants, Allium sativum. Infection by this virus creates typical mosaic symptoms. The core-like sequence of a zinc finger protein preceded by a cluster of basic amino acid residues shows similarities to the corresponding 12K proteins of the potexviruses and carlaviruses []. Viral epidemics by allexiviruses are also known to be caused by aphids and eriophyid mites (Aceria tulipae) carrying Potyviruses, Carlaviruses, and Allexiviruses [].
Probab=33.96 E-value=2.8e+02 Score=23.23 Aligned_cols=85 Identities=12% Similarity=0.117 Sum_probs=44.9
Q ss_pred CchhhHHHHhhhcCCCCcccccCccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCccccccCCCCCCCCHHHH
Q 045249 59 PDFDKILNRYLDQNHSSLDEVNTIPCVQQHNKEYEDAMQELEKEKKRGKMIEEEKKKNKSNGRFWWQEGNIIDDMGIEEL 138 (211)
Q Consensus 59 psv~~Vl~ry~~~~~~~~~~~~~~~~~~~l~~~~~~l~~el~k~kk~~~~l~~~~~~~~~~~~~~~~~G~~l~~Ls~eeL 138 (211)
-.+++||+.+...... + ...-+.+++..+..+....+.+....... ....+..+..++
T Consensus 59 h~~d~ii~~ln~~~~~--------s----~~t~ls~~r~~~~tL~~~~~~i~~~~~~~----------~~~~~~~~~~~~ 116 (271)
T PF05549_consen 59 HNVDQIINMLNPINLT--------S----QGTPLSRIRDALRTLTRLLDSIHSVEQKS----------ELSANTPSSSKL 116 (271)
T ss_pred ccHHHHHHHhCcccch--------h----hcchHHHHHHHHHHHHhhHHHHHHHHHHH----------hcccCCccchhH
Confidence 3688888888553210 0 11223344444555544444444333221 114444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcC
Q 045249 139 EEYLKAMKKLKGKVEMRVNEIMMNGYL 165 (211)
Q Consensus 139 ~~L~~~Le~~l~~V~~R~~~L~~~~~~ 165 (211)
..-...|+..+..+-.|+++|......
T Consensus 117 ~~~l~~iet~L~~lh~kld~l~~~~~~ 143 (271)
T PF05549_consen 117 LKKLASIETSLESLHIKLDELISSLTS 143 (271)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhcccc
Confidence 566666777777777888887765543
No 71
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=33.88 E-value=2.4e+02 Score=25.67 Aligned_cols=70 Identities=20% Similarity=0.273 Sum_probs=31.2
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045249 88 HNKEYEDAMQELEKEKKRGKMIEEEKKKNKSNGRFWWQEGNIIDDMGIEELEEYLKAMKKLKGKVEMRVNEIMM 161 (211)
Q Consensus 88 l~~~~~~l~~el~k~kk~~~~l~~~~~~~~~~~~~~~~~G~~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~L~~ 161 (211)
..+...+++..+++..++...++++.+.++.+..-|- . .+..+ .+.+.....+.+..+..+.+.+..|++
T Consensus 380 ~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~-~--kl~~~-~e~~~~~~~s~d~~I~dLqEQlrDlmf 449 (493)
T KOG0804|consen 380 VERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWR-G--KLKEL-EEREKEALGSKDEKITDLQEQLRDLMF 449 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH-H--HHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHhe
Confidence 3344555555555555555444433333223333332 1 11111 233344444555555556666665554
No 72
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.48 E-value=2.9e+02 Score=23.26 Aligned_cols=63 Identities=16% Similarity=0.235 Sum_probs=39.6
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 045249 83 PCVQQHNKEYEDAMQELEKEKKRGKMIEEEKKKNKSNGRFWWQEGNIIDDMGIEELEEYLKAMKKLKGKVEMRVNEIMMN 162 (211)
Q Consensus 83 ~~~~~l~~~~~~l~~el~k~kk~~~~l~~~~~~~~~~~~~~~~~G~~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~L~~~ 162 (211)
..++.|..+++.+..+++..++++.++....+.+ -.++..++..|.+..+.+..|...+.++
T Consensus 52 ~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l------------------~~eI~~~~~~I~~r~~~l~~raRAmq~n 113 (265)
T COG3883 52 NEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKL------------------QKEIAELKENIVERQELLKKRARAMQVN 113 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444555555555555555555555554333320 3467788888888888888888888776
Q ss_pred C
Q 045249 163 G 163 (211)
Q Consensus 163 ~ 163 (211)
+
T Consensus 114 G 114 (265)
T COG3883 114 G 114 (265)
T ss_pred C
Confidence 6
No 73
>PRK02224 chromosome segregation protein; Provisional
Probab=32.97 E-value=3.9e+02 Score=26.20 Aligned_cols=14 Identities=0% Similarity=-0.071 Sum_probs=7.4
Q ss_pred CCCchhhHHHHhhh
Q 045249 57 GHPDFDKILNRYLD 70 (211)
Q Consensus 57 ~~psv~~Vl~ry~~ 70 (211)
.......+++.|..
T Consensus 462 ~~~~~~~~~~~~~~ 475 (880)
T PRK02224 462 EGSPHVETIEEDRE 475 (880)
T ss_pred CCcchhhhHHHHHH
Confidence 33334466666644
No 74
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=32.00 E-value=2.9e+02 Score=22.73 Aligned_cols=113 Identities=14% Similarity=0.165 Sum_probs=66.6
Q ss_pred HHHHHHHHhhhhccceEEEEeC----CCCccccc-----CCCchhhHHHHhhhcCCCCcccccCccchhhhhHHHHHHHH
Q 045249 27 LFSKAMELCVLCGAEVGIIVFS----PNGKIFLA-----GHPDFDKILNRYLDQNHSSLDEVNTIPCVQQHNKEYEDAMQ 97 (211)
Q Consensus 27 L~KKa~ELs~LC~veva~ivfs----p~gk~~~f-----~~psv~~Vl~ry~~~~~~~~~~~~~~~~~~~l~~~~~~l~~ 97 (211)
-.+++.+++.-.|.-|+-.-.+ .++..... +...++..++...... .-....-..+....+|..++.
T Consensus 64 a~~~i~~~~~~~gG~i~~~~~~~~~~~~~~~~~~ltiRVP~~~~~~~l~~l~~~g----~v~~~~~~~~DvT~~y~D~~a 139 (262)
T PF14257_consen 64 AVKKIENLVESYGGYIESSSSSSSGGSDDERSASLTIRVPADKFDSFLDELSELG----KVTSRNISSEDVTEQYVDLEA 139 (262)
T ss_pred HHHHHHHHHHHcCCEEEEEeeecccCCCCcceEEEEEEECHHHHHHHHHHHhccC----ceeeeeccccchHHHHHHHHH
Confidence 3556666666667665555443 11111111 2234666666665422 111123345567778888888
Q ss_pred HHHHHHHHhHHHHHHHHhcccCCccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045249 98 ELEKEKKRGKMIEEEKKKNKSNGRFWWQEGNIIDDMGIEELEEYLKAMKKLKGKVEMRVNEI 159 (211)
Q Consensus 98 el~k~kk~~~~l~~~~~~~~~~~~~~~~~G~~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~L 159 (211)
+++.+++..+.+.+++.+ . . +++|+..++..|.+....|..-..++
T Consensus 140 rl~~l~~~~~rl~~ll~k----------a--~----~~~d~l~ie~~L~~v~~eIe~~~~~~ 185 (262)
T PF14257_consen 140 RLKNLEAEEERLLELLEK----------A--K----TVEDLLEIERELSRVRSEIEQLEGQL 185 (262)
T ss_pred HHHHHHHHHHHHHHHHHh----------c--C----CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888777777766654 1 1 78899999888887777765544433
No 75
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=31.43 E-value=2.8e+02 Score=25.14 Aligned_cols=20 Identities=10% Similarity=0.248 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 045249 136 EELEEYLKAMKKLKGKVEMR 155 (211)
Q Consensus 136 eeL~~L~~~Le~~l~~V~~R 155 (211)
+|+..|+..++++.+.+-..
T Consensus 105 ~ei~~l~~~~~~~~~~i~~~ 124 (431)
T PLN03230 105 AQIAELEERYDQVRRELYSR 124 (431)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 56777777777776666443
No 76
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=31.21 E-value=85 Score=26.47 Aligned_cols=36 Identities=11% Similarity=0.173 Sum_probs=28.1
Q ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045249 126 EGNIIDDMGIEELEEYLKAMKKLKGKVEMRVNEIMM 161 (211)
Q Consensus 126 ~G~~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~L~~ 161 (211)
.-+.|++|+.+||.+|...|...+..|-+-..+.+.
T Consensus 212 SrEeL~~Mt~~EL~qL~~~L~~qIq~vfeeLt~~vQ 247 (285)
T PF06937_consen 212 SREELNSMTLDELKQLNEKLLQQIQDVFEELTQQVQ 247 (285)
T ss_pred CHHHhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345889999999999999888888877666655554
No 77
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=30.80 E-value=2.5e+02 Score=21.63 Aligned_cols=31 Identities=19% Similarity=0.366 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045249 131 DDMGIEELEEYLKAMKKLKGKVEMRVNEIMM 161 (211)
Q Consensus 131 ~~Ls~eeL~~L~~~Le~~l~~V~~R~~~L~~ 161 (211)
++|.+-|..+|.-.-..+.+.|.+|-.+|..
T Consensus 37 e~L~~iDFeqLkien~~l~~kIeERn~eL~~ 67 (177)
T PF13870_consen 37 EGLHLIDFEQLKIENQQLNEKIEERNKELLK 67 (177)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577778888877777888888887776653
No 78
>PRK00064 recF recombination protein F; Reviewed
Probab=30.79 E-value=3.6e+02 Score=23.46 Aligned_cols=38 Identities=29% Similarity=0.492 Sum_probs=27.2
Q ss_pred HHHHHHhhhhccceEEEEeCCCCcccccCCCch-hhHHHHhhh
Q 045249 29 SKAMELCVLCGAEVGIIVFSPNGKIFLAGHPDF-DKILNRYLD 70 (211)
Q Consensus 29 KKa~ELs~LC~veva~ivfsp~gk~~~f~~psv-~~Vl~ry~~ 70 (211)
|++++|.-+. .+|+|+|..--...+.|+. .+.||++..
T Consensus 103 ~~~~~l~~~~----~~v~~~p~~~~l~~~~p~~RR~fLD~~~~ 141 (361)
T PRK00064 103 RKLAELAGLL----NVVLFTPEDLRLVKGGPSERRRFLDRLLF 141 (361)
T ss_pred cCHHHHhhhc----cEEEEccchhhhhcCCHHHHHHHHHHHHh
Confidence 3566665554 3799999997666688875 478888865
No 79
>PRK11637 AmiB activator; Provisional
Probab=30.36 E-value=3.4e+02 Score=24.16 Aligned_cols=29 Identities=3% Similarity=0.090 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 045249 135 IEELEEYLKAMKKLKGKVEMRVNEIMMNG 163 (211)
Q Consensus 135 ~eeL~~L~~~Le~~l~~V~~R~~~L~~~~ 163 (211)
-+++.+++..|+...+.+..|+..+-+..
T Consensus 109 ~~eI~~~q~~l~~~~~~l~~rlra~Y~~g 137 (428)
T PRK11637 109 NASIAKLEQQQAAQERLLAAQLDAAFRQG 137 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 45677777777777777888887777655
No 80
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=29.88 E-value=86 Score=22.47 Aligned_cols=18 Identities=22% Similarity=0.425 Sum_probs=15.4
Q ss_pred CCCCCCHHHHHHHHHHHH
Q 045249 129 IIDDMGIEELEEYLKAMK 146 (211)
Q Consensus 129 ~l~~Ls~eeL~~L~~~Le 146 (211)
.++.|+.+|+..|...++
T Consensus 86 Rle~l~~eE~~~L~~eie 103 (104)
T PF11460_consen 86 RLEELSPEELEALQAEIE 103 (104)
T ss_pred HHHhCCHHHHHHHHHHhc
Confidence 667899999999988876
No 81
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=29.70 E-value=1.9e+02 Score=22.79 Aligned_cols=19 Identities=16% Similarity=0.104 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 045249 136 EELEEYLKAMKKLKGKVEM 154 (211)
Q Consensus 136 eeL~~L~~~Le~~l~~V~~ 154 (211)
.||++|+.+|++.+-.|++
T Consensus 159 qElqELE~QL~DRl~~l~e 177 (179)
T PF14723_consen 159 QELQELEFQLEDRLLQLRE 177 (179)
T ss_pred HHHHHHHHHHHHHHHHHHc
Confidence 3455555555555555543
No 82
>PRK04863 mukB cell division protein MukB; Provisional
Probab=29.42 E-value=2.5e+02 Score=29.79 Aligned_cols=32 Identities=9% Similarity=0.225 Sum_probs=24.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045249 129 IIDDMGIEELEEYLKAMKKLKGKVEMRVNEIM 160 (211)
Q Consensus 129 ~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~L~ 160 (211)
.+.+|+.++|.......+..+.........+.
T Consensus 431 ~~~~~SdEeLe~~LenF~aklee~e~qL~elE 462 (1486)
T PRK04863 431 GLPDLTADNAEDWLEEFQAKEQEATEELLSLE 462 (1486)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999888877777777666555543
No 83
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=29.41 E-value=70 Score=19.34 Aligned_cols=27 Identities=11% Similarity=0.064 Sum_probs=19.6
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHhHHH
Q 045249 83 PCVQQHNKEYEDAMQELEKEKKRGKMI 109 (211)
Q Consensus 83 ~~~~~l~~~~~~l~~el~k~kk~~~~l 109 (211)
..-+.+.-++..|++|+..+++-|+.+
T Consensus 11 G~~e~l~vrv~eLEeEV~~LrKINrdL 37 (48)
T PF14077_consen 11 GDQEQLRVRVSELEEEVRTLRKINRDL 37 (48)
T ss_pred CCcchheeeHHHHHHHHHHHHHHhHHH
Confidence 334466777888888888888877655
No 84
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=29.17 E-value=1.5e+02 Score=18.97 Aligned_cols=27 Identities=4% Similarity=0.126 Sum_probs=16.3
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhHHHH
Q 045249 84 CVQQHNKEYEDAMQELEKEKKRGKMIE 110 (211)
Q Consensus 84 ~~~~l~~~~~~l~~el~k~kk~~~~l~ 110 (211)
.++.|..+|..|.++...++.+|.-++
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~~Lk 41 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENNLLK 41 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666655444
No 85
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=29.12 E-value=3.4e+02 Score=25.81 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=9.4
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHH
Q 045249 87 QHNKEYEDAMQELEKEKKRGKMI 109 (211)
Q Consensus 87 ~l~~~~~~l~~el~k~kk~~~~l 109 (211)
.|..++..|+.+++.+++.+++|
T Consensus 433 ~l~~e~~~L~~~~ee~k~eie~L 455 (652)
T COG2433 433 RLEEENSELKRELEELKREIEKL 455 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444333
No 86
>KOG4316 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.92 E-value=25 Score=26.81 Aligned_cols=42 Identities=12% Similarity=0.142 Sum_probs=24.6
Q ss_pred HHHhhhhccceEEEEe----CCCC--cccccCC-----CchhhHHHHhhhcCC
Q 045249 32 MELCVLCGAEVGIIVF----SPNG--KIFLAGH-----PDFDKILNRYLDQNH 73 (211)
Q Consensus 32 ~ELs~LC~veva~ivf----sp~g--k~~~f~~-----psv~~Vl~ry~~~~~ 73 (211)
+++++||++...+.-- -|.. ...-|+. -.|++||+||+..+.
T Consensus 43 ~a~~~lcq~p~vla~r~a~~~Ps~~r~~t~Fs~~kGkrktvkaVldRFkRL~~ 95 (172)
T KOG4316|consen 43 SARNLLCQHPSVLANRMAPVLPSVVRSLTYFSARKGKRKTVKAVLDRFKRLHC 95 (172)
T ss_pred hHHHhHhcCcHHHHhccCCCCcchhhhhhhhhhhhcccccHHHHHHHHHhccc
Confidence 5788999776543311 1221 1222321 258999999999773
No 87
>PF08557 Lipid_DES: Sphingolipid Delta4-desaturase (DES); InterPro: IPR013866 Sphingolipids are important membrane signalling molecules involved in many different cellular functions in eukaryotes. Sphingolipid delta 4-desaturase catalyses the formation of (E)-sphing-4-enine []. Some proteins in this entry have bifunctional delta 4-desaturase/C-4-hydroxylase activity. Delta 4-desaturated sphingolipids may play a role in early signalling required for entry into meiotic and spermatid differentiation pathways during Drosophila spermatogenesis []. This small protein associates with FA_desaturase IPR005804 from INTERPRO and appears to be specific to sphingolipid delta 4-desaturase. ; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=28.81 E-value=39 Score=19.73 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=18.6
Q ss_pred hhhhhhHHHHHHHHhhhhccc
Q 045249 21 SKRRSGLFSKAMELCVLCGAE 41 (211)
Q Consensus 21 ~KRr~GL~KKa~ELs~LC~ve 41 (211)
..||.-++||=-|+-.|+|.+
T Consensus 16 ~~RRk~IL~k~PeIk~L~G~d 36 (39)
T PF08557_consen 16 ASRRKEILKKHPEIKKLMGPD 36 (39)
T ss_pred HHHHHHHHHhChHHHHHhCCC
Confidence 468999999999999999876
No 88
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=28.73 E-value=44 Score=23.61 Aligned_cols=28 Identities=32% Similarity=0.338 Sum_probs=22.5
Q ss_pred HHHHHHhhhhccceEEEEeCCCCcccccC
Q 045249 29 SKAMELCVLCGAEVGIIVFSPNGKIFLAG 57 (211)
Q Consensus 29 KKa~ELs~LC~veva~ivfsp~gk~~~f~ 57 (211)
.|..||--+-||-+| =.|||+||+-+|-
T Consensus 3 ekLdeLlqi~Gv~AA-Gefs~DGkLv~Yk 30 (109)
T COG4831 3 EKLDELLQIKGVMAA-GEFSPDGKLVEYK 30 (109)
T ss_pred hhHHHHhCccceeEe-ceeCCCCceEEee
Confidence 467888888888655 6899999998883
No 89
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=28.59 E-value=2.7e+02 Score=21.27 Aligned_cols=33 Identities=21% Similarity=0.424 Sum_probs=27.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 045249 130 IDDMGIEELEEYLKAMKKLKGKVEMRVNEIMMN 162 (211)
Q Consensus 130 l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~L~~~ 162 (211)
++.-.++++..|...+.++...|...++.+...
T Consensus 83 ~d~~kv~~~E~L~d~v~eLkeel~~el~~l~~~ 115 (146)
T PF05852_consen 83 FDRKKVEDLEKLTDRVEELKEELEFELERLQSA 115 (146)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455568899999999999999999999988643
No 90
>PHA03155 hypothetical protein; Provisional
Probab=28.58 E-value=2.4e+02 Score=20.60 Aligned_cols=52 Identities=13% Similarity=0.114 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhcccCCccccccCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 045249 92 YEDAMQELEKEKKRGKMIEEEKKKNKSNGRFWWQEGNIIDDMGIEELEEYLKAMKKLKGKV 152 (211)
Q Consensus 92 ~~~l~~el~k~kk~~~~l~~~~~~~~~~~~~~~~~G~~l~~Ls~eeL~~L~~~Le~~l~~V 152 (211)
+++|.++|.+++-+|..|++.... .. .. +-.-|+..|=+.+..+.-..|...
T Consensus 10 vEeLaaeL~kL~~ENK~LKkkl~~--~~-----~p--~d~~LT~~qKea~I~s~v~~Lt~~ 61 (115)
T PHA03155 10 VEELEKELQKLKIENKALKKKLLQ--HG-----NP--EDELLTPAQKDAIINSLVNKLTKK 61 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc--cC-----CC--CccccCHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777654444 11 11 235589999888888777666553
No 91
>PRK14626 hypothetical protein; Provisional
Probab=28.15 E-value=78 Score=22.86 Aligned_cols=25 Identities=20% Similarity=0.197 Sum_probs=14.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHH
Q 045249 85 VQQHNKEYEDAMQELEKEKKRGKMI 109 (211)
Q Consensus 85 ~~~l~~~~~~l~~el~k~kk~~~~l 109 (211)
...+.++..++++++++.++++..+
T Consensus 7 ~~~mmkqaq~mQ~km~~~qeeL~~~ 31 (110)
T PRK14626 7 LAELMKQMQSIKENVEKAKEELKKE 31 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4455566666666666666654433
No 92
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=28.13 E-value=2.1e+02 Score=19.95 Aligned_cols=72 Identities=22% Similarity=0.362 Sum_probs=35.8
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCccccccCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045249 83 PCVQQHNKEYEDAMQELEKEKKRGKMIEEEKKKNKSNGRFWWQEGNIIDDM--GIEELEEYLKAMKKLKGKVEMRVNEIM 160 (211)
Q Consensus 83 ~~~~~l~~~~~~l~~el~k~kk~~~~l~~~~~~~~~~~~~~~~~G~~l~~L--s~eeL~~L~~~Le~~l~~V~~R~~~L~ 160 (211)
+.+-.+..+...+..+++.++.+...+.+.....+. .|++.+.| -..++..-...++..+..+..++..++
T Consensus 29 d~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~-------~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 29 DEIIELDQERRELQQELEELRAERNELSKEIGKLKK-------AGEDAEELKAEVKELKEEIKELEEQLKELEEELNELL 101 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCH-------TTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh-------CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666777766655555433322111 13233332 234444445555566666666666665
Q ss_pred H
Q 045249 161 M 161 (211)
Q Consensus 161 ~ 161 (211)
.
T Consensus 102 ~ 102 (108)
T PF02403_consen 102 L 102 (108)
T ss_dssp C
T ss_pred H
Confidence 3
No 93
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=28.10 E-value=2.1e+02 Score=19.76 Aligned_cols=50 Identities=22% Similarity=0.286 Sum_probs=33.6
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCccccccCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 045249 89 NKEYEDAMQELEKEKKRGKMIEEEKKKNKSNGRFWWQEGNIIDDMGIEELEEYLKAMKKLKGKVE 153 (211)
Q Consensus 89 ~~~~~~l~~el~k~kk~~~~l~~~~~~~~~~~~~~~~~G~~l~~Ls~eeL~~L~~~Le~~l~~V~ 153 (211)
..+|+.+.+.+...+.+.+.++... --..||.++-..++..+..+.+.+.
T Consensus 4 ~~eId~lEekl~~cr~~le~ve~rL---------------~~~eLs~e~R~~lE~E~~~l~~~l~ 53 (85)
T PF15188_consen 4 AKEIDGLEEKLAQCRRRLEAVESRL---------------RRRELSPEARRSLEKELNELKEKLE 53 (85)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHH---------------cccCCChHHHHHHHHHHHHHHHHhh
Confidence 4577888888888888877776332 2245677777777777666666553
No 94
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.72 E-value=52 Score=23.68 Aligned_cols=62 Identities=15% Similarity=0.160 Sum_probs=30.5
Q ss_pred HHHHHHHhhhhccceEEEEeCCCCc-cccc-CCCchhhHHHHhhhcCCCCcccccCccchhhhhHHHHHHHHHHHHHHHH
Q 045249 28 FSKAMELCVLCGAEVGIIVFSPNGK-IFLA-GHPDFDKILNRYLDQNHSSLDEVNTIPCVQQHNKEYEDAMQELEKEKKR 105 (211)
Q Consensus 28 ~KKa~ELs~LC~veva~ivfsp~gk-~~~f-~~psv~~Vl~ry~~~~~~~~~~~~~~~~~~~l~~~~~~l~~el~k~kk~ 105 (211)
.|+.+-|+ ||-+-+++--.+.+-| +|.| +.+. .|-+-|++ + +...+|++.|++-+++.+.+
T Consensus 4 ~ktlsr~a-l~~av~~LagC~~gpKslY~w~gYq~--tvyEy~K~-~-------------es~e~Q~~~le~~~ek~~ak 66 (121)
T COG4259 4 LKTLSRLA-LLLAVAALAGCGGGPKSLYQWEGYQD--TVYEYFKG-D-------------ESKEAQTAALEKYLEKIGAK 66 (121)
T ss_pred hHHHHHHH-HHHHHHHHHHccCCCccccccCCccH--HHHHHHcC-C-------------CCHHHHHHHHHHHHHHHhhc
Confidence 45666666 5533333322332223 6666 3443 34455544 1 23455666666666665554
Q ss_pred h
Q 045249 106 G 106 (211)
Q Consensus 106 ~ 106 (211)
+
T Consensus 67 ~ 67 (121)
T COG4259 67 N 67 (121)
T ss_pred C
Confidence 3
No 95
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.57 E-value=4.7e+02 Score=25.89 Aligned_cols=36 Identities=19% Similarity=0.086 Sum_probs=26.7
Q ss_pred EcCCCccchhhhhhhhhhHHHHHHHHh-hhhccceEE
Q 045249 9 KLEDKNSLQVTFSKRRSGLFSKAMELC-VLCGAEVGI 44 (211)
Q Consensus 9 ~I~n~~~R~vTF~KRr~GL~KKa~ELs-~LC~veva~ 44 (211)
+|-...++..+..-+-..|=-|..+|+ -||||.+-+
T Consensus 431 ~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~ 467 (1118)
T KOG1029|consen 431 WIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDI 467 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheecc
Confidence 344455667777778888888888987 589988764
No 96
>PF06020 Roughex: Drosophila roughex protein; InterPro: IPR009259 This family consists of several roughex (RUX) proteins specific to Drosophila species. Roughex can influence the intracellular distribution of cyclin A and is therefore defined as a distinct and specialised cell cycle inhibitor for cyclin A-dependent kinase activity []. Rux is though to regulate the metaphase to anaphase transition during development [].
Probab=27.24 E-value=29 Score=29.50 Aligned_cols=17 Identities=18% Similarity=0.266 Sum_probs=13.8
Q ss_pred hhhhccceEEEEeCCCC
Q 045249 35 CVLCGAEVGIIVFSPNG 51 (211)
Q Consensus 35 s~LC~veva~ivfsp~g 51 (211)
.-+||+|||++||--.-
T Consensus 183 ~~~~~~EICLavYek~~ 199 (334)
T PF06020_consen 183 GQVSGFEICLAVYEKGL 199 (334)
T ss_pred CccccceEEeeehhhhc
Confidence 34799999999998663
No 97
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=27.15 E-value=1.4e+02 Score=21.32 Aligned_cols=27 Identities=19% Similarity=0.069 Sum_probs=19.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHHH
Q 045249 85 VQQHNKEYEDAMQELEKEKKRGKMIEE 111 (211)
Q Consensus 85 ~~~l~~~~~~l~~el~k~kk~~~~l~~ 111 (211)
...+++++..++.++++++.+++.|+.
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~ 55 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFA 55 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777777777776663
No 98
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=27.02 E-value=2.7e+02 Score=20.85 Aligned_cols=8 Identities=38% Similarity=0.555 Sum_probs=4.1
Q ss_pred CCCCHHHH
Q 045249 131 DDMGIEEL 138 (211)
Q Consensus 131 ~~Ls~eeL 138 (211)
.+++++||
T Consensus 68 ~Gis~~eL 75 (135)
T PRK10947 68 DGIDPNEL 75 (135)
T ss_pred cCCCHHHH
Confidence 34555555
No 99
>PF10148 SCHIP-1: Schwannomin-interacting protein 1; InterPro: IPR015649 SCHIP-1 is a coiled-coil protein that specifically associates with schwannomin in vitro and in vivo. The product of the neurofibromatosis type 2 (NF2) tumour suppressor gene, known as schwannomin or merlin, is involved in NF2-associated and sporadic schwannomas and meningiomas. It is closely related to the ezrin-radixin-moesin family members, which link membrane proteins to the cytoskeleton. Association with SCHIP-1 can be observed only with some naturally occurring mutants of schwannomin, or a schwannomin spliced isoform lacking exons 2 and 3, but not with the schwannomin isoform exhibiting growth-suppressive activity []. This entry consists of mammalian SCHIP-1 proteins from Mus musculus (Mouse) and Homo sapiens (Human).
Probab=26.67 E-value=3.5e+02 Score=22.42 Aligned_cols=35 Identities=6% Similarity=0.233 Sum_probs=30.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 045249 129 IIDDMGIEELEEYLKAMKKLKGKVEMRVNEIMMNG 163 (211)
Q Consensus 129 ~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~L~~~~ 163 (211)
.|..|++.+|+.+...|+..+.....-.-.++++-
T Consensus 169 ~L~~~~~~qLq~i~~~l~~~i~~ln~~Lv~~L~~R 203 (238)
T PF10148_consen 169 DLTKMNVPQLQVIVNDLHEQIEALNEELVQLLLER 203 (238)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67889999999999999999999988887777643
No 100
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=26.48 E-value=5.4e+02 Score=24.09 Aligned_cols=25 Identities=20% Similarity=0.142 Sum_probs=15.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHH
Q 045249 85 VQQHNKEYEDAMQELEKEKKRGKMI 109 (211)
Q Consensus 85 ~~~l~~~~~~l~~el~k~kk~~~~l 109 (211)
-++|+.+|..++-+.+|+-.+..++
T Consensus 32 fqflqaqyhslkleceKlA~EKteM 56 (705)
T KOG0639|consen 32 FQFLQAQYHSLKLECEKLASEKTEM 56 (705)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 3567777777777776665444333
No 101
>PF00846 Hanta_nucleocap: Hantavirus nucleocapsid protein; InterPro: IPR002214 Hantaviruses are ssRNA negative-strand viruses. The nucleocapsid protein is an internal protein of the virus particle [, ].; GO: 0019013 viral nucleocapsid; PDB: 2IC9_A 2IC6_A 2K48_A 4FI5_A.
Probab=26.41 E-value=1.4e+02 Score=26.68 Aligned_cols=69 Identities=12% Similarity=0.230 Sum_probs=38.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 045249 85 VQQHNKEYEDAMQELEKEKKRGKMIEEEKKKNKSNGRFWWQEGNIIDDMGIEELEEYLKAMKKLKGKVEMRVNEIMMNG 163 (211)
Q Consensus 85 ~~~l~~~~~~l~~el~k~kk~~~~l~~~~~~~~~~~~~~~~~G~~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~L~~~~ 163 (211)
++.++.+++..+.||...+.+.+.-++.... ..++++--++.+-+.-...|+.++..++..+..+...+
T Consensus 4 ~~elq~e~~~~E~qL~~a~qkl~da~~~~e~----------dpD~~nk~~~~~R~~~v~~~~~Ki~elkr~lAd~v~~~ 72 (428)
T PF00846_consen 4 LEELQEEITQHEQQLVIARQKLKDAEKQYEK----------DPDDVNKSTLQQRQSVVSALQDKIAELKRQLADRVAAG 72 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4566666776666666655554443322222 02233333455555666677777777777766666544
No 102
>TIGR02780 TrbJ_Ti P-type conjugative transfer protein TrbJ. The TrbJ protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbJ is a homolog of the F-type TraE protein (which is believed to be an inner membrane pore-forming protein, TIGR02761) as well as the vir system VirB5 protein.
Probab=26.04 E-value=3.7e+02 Score=22.09 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=14.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhH
Q 045249 85 VQQHNKEYEDAMQELEKEKKRGK 107 (211)
Q Consensus 85 ~~~l~~~~~~l~~el~k~kk~~~ 107 (211)
++.+.++++.++.++...+....
T Consensus 45 ~~q~~~Qi~qlqnQiq~y~nql~ 67 (246)
T TIGR02780 45 VEQLNNQIQQLQNQIQRYENQLK 67 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777766655443
No 103
>PF14009 DUF4228: Domain of unknown function (DUF4228)
Probab=25.91 E-value=64 Score=24.43 Aligned_cols=33 Identities=15% Similarity=0.244 Sum_probs=24.7
Q ss_pred hccceEEEEeCCCCcccccCCC-chhhHHHHhhh
Q 045249 38 CGAEVGIIVFSPNGKIFLAGHP-DFDKILNRYLD 70 (211)
Q Consensus 38 C~veva~ivfsp~gk~~~f~~p-sv~~Vl~ry~~ 70 (211)
|+...++-|..++|++..|..| .|.+|+..|=.
T Consensus 12 ~~~~~~vkvv~~~G~v~~~~~pv~a~evm~~~P~ 45 (181)
T PF14009_consen 12 SSSAATVKVVHPDGKVEEFKRPVTAAEVMLENPG 45 (181)
T ss_pred cCCCceEEEEcCCCcEEEeCCCcCHHHHHHHCCC
Confidence 4455555666689999999888 68888888844
No 104
>PF08432 Vfa1: AAA-ATPase Vps4-associated protein 1; InterPro: IPR013640 This is a family of fungal proteins of unknown function.
Probab=25.50 E-value=94 Score=24.44 Aligned_cols=14 Identities=21% Similarity=0.451 Sum_probs=10.5
Q ss_pred hccceEEEEeCCCC
Q 045249 38 CGAEVGIIVFSPNG 51 (211)
Q Consensus 38 C~veva~ivfsp~g 51 (211)
.++..|.|||-|+-
T Consensus 11 ~~~k~C~IC~Kpst 24 (182)
T PF08432_consen 11 TDAKACFICYKPST 24 (182)
T ss_pred CCCCceeEecCCCc
Confidence 46778888888764
No 105
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=24.36 E-value=5.2e+02 Score=23.19 Aligned_cols=26 Identities=15% Similarity=0.249 Sum_probs=13.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHH
Q 045249 85 VQQHNKEYEDAMQELEKEKKRGKMIE 110 (211)
Q Consensus 85 ~~~l~~~~~~l~~el~k~kk~~~~l~ 110 (211)
+-.+.++..+++.+++.++++..++.
T Consensus 30 i~~ld~~~r~l~~~~~~lr~~rn~~s 55 (425)
T PRK05431 30 LLELDEERRELQTELEELQAERNALS 55 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555444443
No 106
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=24.28 E-value=2.3e+02 Score=23.25 Aligned_cols=27 Identities=22% Similarity=0.225 Sum_probs=14.3
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhHHHH
Q 045249 84 CVQQHNKEYEDAMQELEKEKKRGKMIE 110 (211)
Q Consensus 84 ~~~~l~~~~~~l~~el~k~kk~~~~l~ 110 (211)
....+..+|..+..+++.++..++.++
T Consensus 50 e~~~L~~e~~~l~~e~e~L~~~~~~l~ 76 (251)
T PF11932_consen 50 EKQELLAEYRQLEREIENLEVYNEQLE 76 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555444
No 107
>PRK04654 sec-independent translocase; Provisional
Probab=23.99 E-value=3.2e+02 Score=22.22 Aligned_cols=17 Identities=29% Similarity=0.655 Sum_probs=10.9
Q ss_pred HHhhhhccceEEEEeCCCC
Q 045249 33 ELCVLCGAEVGIIVFSPNG 51 (211)
Q Consensus 33 ELs~LC~veva~ivfsp~g 51 (211)
||-++. =|++|||+|..
T Consensus 8 ELLlI~--VVALlV~GPer 24 (214)
T PRK04654 8 ELTLIA--VVALVVLGPER 24 (214)
T ss_pred HHHHHH--HHHHHhcCchH
Confidence 444443 36788898875
No 108
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=23.84 E-value=66 Score=24.25 Aligned_cols=23 Identities=26% Similarity=0.137 Sum_probs=18.4
Q ss_pred HhhhhccceEEEEeCCCCccccc
Q 045249 34 LCVLCGAEVGIIVFSPNGKIFLA 56 (211)
Q Consensus 34 Ls~LC~veva~ivfsp~gk~~~f 56 (211)
+.++|||+|-++|-+.+.+...|
T Consensus 59 ~tt~~dadvi~~v~~and~~s~f 81 (148)
T COG4917 59 ITTLQDADVIIYVHAANDPESRF 81 (148)
T ss_pred HHHhhccceeeeeecccCccccC
Confidence 58899999999999988763333
No 109
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=23.56 E-value=6.3e+02 Score=24.07 Aligned_cols=15 Identities=13% Similarity=0.310 Sum_probs=9.5
Q ss_pred CCCCCCHHHHHHHHH
Q 045249 129 IIDDMGIEELEEYLK 143 (211)
Q Consensus 129 ~l~~Ls~eeL~~L~~ 143 (211)
.-++..+.+-+.|..
T Consensus 384 e~ddiPmAqRkRFTR 398 (832)
T KOG2077|consen 384 EDDDIPMAQRKRFTR 398 (832)
T ss_pred ccccccHHHHhhhHH
Confidence 556777777666544
No 110
>PRK10884 SH3 domain-containing protein; Provisional
Probab=23.54 E-value=3.9e+02 Score=21.48 Aligned_cols=16 Identities=6% Similarity=0.175 Sum_probs=6.5
Q ss_pred hhhhHHHHHHHHHHHH
Q 045249 86 QQHNKEYEDAMQELEK 101 (211)
Q Consensus 86 ~~l~~~~~~l~~el~k 101 (211)
..+.++++.+++++..
T Consensus 96 p~le~el~~l~~~l~~ 111 (206)
T PRK10884 96 PDLENQVKTLTDKLNN 111 (206)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444443333
No 111
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=23.51 E-value=3e+02 Score=20.15 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 045249 136 EELEEYLKAMKKLKGKVEMRVN 157 (211)
Q Consensus 136 eeL~~L~~~Le~~l~~V~~R~~ 157 (211)
++..+|..-+.++..-.+..++
T Consensus 96 E~veEL~~Dv~DlK~myr~Qi~ 117 (120)
T PF12325_consen 96 EEVEELRADVQDLKEMYREQID 117 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444433
No 112
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=23.44 E-value=2.9e+02 Score=19.99 Aligned_cols=14 Identities=14% Similarity=0.195 Sum_probs=8.4
Q ss_pred CCHHHHHHHHHHHH
Q 045249 133 MGIEELEEYLKAMK 146 (211)
Q Consensus 133 Ls~eeL~~L~~~Le 146 (211)
.+.++|.+|-..+.
T Consensus 97 ~spe~L~ql~~~~~ 110 (123)
T KOG4797|consen 97 ASPEQLAQLPAQLS 110 (123)
T ss_pred CCHHHHHHHHHhcc
Confidence 35677776665543
No 113
>PRK09039 hypothetical protein; Validated
Probab=23.33 E-value=5e+02 Score=22.59 Aligned_cols=29 Identities=14% Similarity=0.081 Sum_probs=18.9
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHhHHHH
Q 045249 82 IPCVQQHNKEYEDAMQELEKEKKRGKMIE 110 (211)
Q Consensus 82 ~~~~~~l~~~~~~l~~el~k~kk~~~~l~ 110 (211)
...+..|+++++.|+.++..++..+...+
T Consensus 136 ~~~V~~L~~qI~aLr~Qla~le~~L~~ae 164 (343)
T PRK09039 136 LAQVELLNQQIAALRRQLAALEAALDASE 164 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777777777777766666655554
No 114
>PRK13677 hypothetical protein; Provisional
Probab=23.18 E-value=3.1e+02 Score=20.18 Aligned_cols=25 Identities=8% Similarity=0.298 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 045249 135 IEELEEYLKAMKKLKGKVEMRVNEI 159 (211)
Q Consensus 135 ~eeL~~L~~~Le~~l~~V~~R~~~L 159 (211)
++||.-|+..+..++..|.+.++.|
T Consensus 101 L~dLrHLE~Vv~~KIaEIe~dLekL 125 (125)
T PRK13677 101 LDDLRHLESVVANKISEIEADLEKL 125 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 7899999999999999998877653
No 115
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=22.87 E-value=5.1e+02 Score=23.39 Aligned_cols=48 Identities=10% Similarity=0.187 Sum_probs=29.4
Q ss_pred hhhHHHHhhhcCCCCcccccCccchhhhhHHHHHHHHHHHHHHHHhHHH
Q 045249 61 FDKILNRYLDQNHSSLDEVNTIPCVQQHNKEYEDAMQELEKEKKRGKMI 109 (211)
Q Consensus 61 v~~Vl~ry~~~~~~~~~~~~~~~~~~~l~~~~~~l~~el~k~kk~~~~l 109 (211)
++.+++.|...... ..........+++.+++..++.+++..+.+....
T Consensus 140 ~n~l~~~yi~~~~~-~~~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f 187 (498)
T TIGR03007 140 VQTLLTIFVEETLG-SKRQDSDSAQRFIDEQIKTYEKKLEAAENRLKAF 187 (498)
T ss_pred HHHHHHHHHHhhcc-cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777778775421 1111123466778888888888887776665444
No 116
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=22.58 E-value=1.7e+02 Score=21.01 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=6.1
Q ss_pred hhHHHHHHHHHHHHHH
Q 045249 88 HNKEYEDAMQELEKEK 103 (211)
Q Consensus 88 l~~~~~~l~~el~k~k 103 (211)
+.+++..+.+++..++
T Consensus 13 le~~l~~l~~~~~~LK 28 (107)
T PF06156_consen 13 LEQQLGQLLEELEELK 28 (107)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 117
>PRK10328 DNA binding protein, nucleoid-associated; Provisional
Probab=22.19 E-value=3.4e+02 Score=20.29 Aligned_cols=8 Identities=50% Similarity=0.680 Sum_probs=4.1
Q ss_pred CCCCHHHH
Q 045249 131 DDMGIEEL 138 (211)
Q Consensus 131 ~~Ls~eeL 138 (211)
.+++++||
T Consensus 68 ~Git~eeL 75 (134)
T PRK10328 68 DGINPEEL 75 (134)
T ss_pred hCCCHHHH
Confidence 34555555
No 118
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=22.13 E-value=1e+02 Score=25.78 Aligned_cols=71 Identities=11% Similarity=0.168 Sum_probs=32.5
Q ss_pred HHHhhhhccceEEEEeCCCCcccccCCCchhhHHHHhhhcCCCCcccccCccchhhhhHHHHHHHHHHHHHHHHhHHH
Q 045249 32 MELCVLCGAEVGIIVFSPNGKIFLAGHPDFDKILNRYLDQNHSSLDEVNTIPCVQQHNKEYEDAMQELEKEKKRGKMI 109 (211)
Q Consensus 32 ~ELs~LC~veva~ivfsp~gk~~~f~~psv~~Vl~ry~~~~~~~~~~~~~~~~~~~l~~~~~~l~~el~k~kk~~~~l 109 (211)
-=|+.|++|-+...++.|.- +...++++++.=+.+...... . .....-.|.++++.|+.++..++-.++++
T Consensus 10 ~~~~~l~~~~~~~~~~a~a~-v~~~~~~~~~~r~~~le~~~~-----~-~~~~~~~l~~ql~~lq~ev~~LrG~~E~~ 80 (263)
T PRK10803 10 LSLSLLVGVAAPWAAFAQAP-ISSVGSGSVEDRVTQLERISN-----A-HSQLLTQLQQQLSDNQSDIDSLRGQIQEN 80 (263)
T ss_pred HHHHHHHHHhhhHHHhcCCc-HHHcCCCchHHHHHHHHHHHH-----h-hhHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 44567776544333333331 122234445444444332110 0 01223356666777766666666555444
No 119
>KOG4571 consensus Activating transcription factor 4 [Transcription]
Probab=22.06 E-value=4.7e+02 Score=22.40 Aligned_cols=16 Identities=31% Similarity=0.430 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHhHHHH
Q 045249 95 AMQELEKEKKRGKMIE 110 (211)
Q Consensus 95 l~~el~k~kk~~~~l~ 110 (211)
+.-+++.+.++|++|+
T Consensus 253 l~ge~~~Le~rN~~LK 268 (294)
T KOG4571|consen 253 LLGELEGLEKRNEELK 268 (294)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444555555554
No 120
>PRK13293 F420-0--gamma-glutamyl ligase; Reviewed
Probab=22.01 E-value=1e+02 Score=25.60 Aligned_cols=28 Identities=36% Similarity=0.567 Sum_probs=22.6
Q ss_pred HHHhhhhccceEEEEeCCCCcccccCCC
Q 045249 32 MELCVLCGAEVGIIVFSPNGKIFLAGHP 59 (211)
Q Consensus 32 ~ELs~LC~veva~ivfsp~gk~~~f~~p 59 (211)
.+|.-.||++|+|||....|+++-.|..
T Consensus 134 ~~l~~~~g~~v~VIItDt~gr~~R~G~t 161 (245)
T PRK13293 134 EGLEELTGKKVGVIITDTNGRPFRKGQR 161 (245)
T ss_pred HHHHHHHCCCEEEEEEcCCCcccccCCc
Confidence 3566789999999999999988766544
No 121
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.82 E-value=3.8e+02 Score=24.47 Aligned_cols=29 Identities=17% Similarity=0.244 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 045249 135 IEELEEYLKAMKKLKGKVEMRVNEIMMNG 163 (211)
Q Consensus 135 ~eeL~~L~~~Le~~l~~V~~R~~~L~~~~ 163 (211)
-++-.+|.+.|.+.+..||-|++-|..+-
T Consensus 71 W~dAcaliQklkes~~~vr~Rl~vL~kqk 99 (560)
T KOG2709|consen 71 WKDACALIQKLKESKSSVRHRLNVLKKQK 99 (560)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 46788999999999999999999988754
No 122
>KOG2861 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.45 E-value=2.4e+02 Score=25.28 Aligned_cols=84 Identities=17% Similarity=0.080 Sum_probs=50.1
Q ss_pred CCCccchhhhhhhhhhHHHHHHHHhhhhccceEEEEeCCC---CcccccCCCchhhHHHHhhhcCCCCcccccCccchhh
Q 045249 11 EDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPN---GKIFLAGHPDFDKILNRYLDQNHSSLDEVNTIPCVQQ 87 (211)
Q Consensus 11 ~n~~~R~vTF~KRr~GL~KKa~ELs~LC~veva~ivfsp~---gk~~~f~~psv~~Vl~ry~~~~~~~~~~~~~~~~~~~ 87 (211)
...-++--||+.+|.-++||..||-.|= +-|..+.+ -+-+.|.-|..+.+-+.....=. ....+.-
T Consensus 276 pe~la~~gkl~lsr~e~lk~iGkLf~LR----~~INL~s~lLdtPdf~W~ep~Le~iY~~~r~yle-------I~qRv~v 344 (399)
T KOG2861|consen 276 PESLALGGKLTLSREELLKKIGKLFALR----HDINLSSGLLDTPDFYWDEPQLEPIYEATRRYLE-------IGQRVNV 344 (399)
T ss_pred HHHHHhcCeecccHHHHHHHHHHHHHHh----eeeecccccccCcccccCchhHHHHHHHHHHHcc-------cchHHHH
Confidence 3334455578899999999999999884 33444433 23455677877766554433110 1244556
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 045249 88 HNKEYEDAMQELEKEKKR 105 (211)
Q Consensus 88 l~~~~~~l~~el~k~kk~ 105 (211)
|++++....+.++-+++.
T Consensus 345 LN~kl~~i~~~~~~l~e~ 362 (399)
T KOG2861|consen 345 LNYKLKVIEDLLDILQEN 362 (399)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666655555555443
No 123
>TIGR02420 dksA RNA polymerase-binding protein DksA. The model that is the basis for this family describes a small, pleiotropic protein, DksA (DnaK suppressor A), originally named as a multicopy suppressor of temperature sensitivity of dnaKJ mutants. DksA mutants are defective in quorum sensing, virulence, etc. DksA is now understood to bind RNA polymerase directly and modulate its response to small molecules to control the level of transcription of rRNA. Nearly all members of this family are in the Proteobacteria. Whether the closest homologs outside the Proteobacteria function equivalently is unknown. The low value set for the noise cutoff allows identification of possible DksA proteins from outside the proteobacteria. TIGR02419 describes a closely related family of short sequences usually found in prophage regions of proteobacterial genomes or in known phage.
Probab=21.19 E-value=2.5e+02 Score=19.96 Aligned_cols=29 Identities=17% Similarity=0.280 Sum_probs=22.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045249 133 MGIEELEEYLKAMKKLKGKVEMRVNEIMM 161 (211)
Q Consensus 133 Ls~eeL~~L~~~Le~~l~~V~~R~~~L~~ 161 (211)
|+.+++..|...|...+..+..++.....
T Consensus 1 M~~~~l~~~k~~L~~~~~~L~~~i~~~~~ 29 (110)
T TIGR02420 1 MSEAQLEHFRKILLRWKQELLEEADKTLE 29 (110)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888898898888888887776654
No 124
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=21.06 E-value=4.1e+02 Score=20.71 Aligned_cols=52 Identities=23% Similarity=0.164 Sum_probs=30.1
Q ss_pred cCCCc-hhhHHHHhhhcCCCCcccccCccchhhhhHHHHHHHHHHHHHHHHhHHHH
Q 045249 56 AGHPD-FDKILNRYLDQNHSSLDEVNTIPCVQQHNKEYEDAMQELEKEKKRGKMIE 110 (211)
Q Consensus 56 f~~ps-v~~Vl~ry~~~~~~~~~~~~~~~~~~~l~~~~~~l~~el~k~kk~~~~l~ 110 (211)
+-.|. |...+.+-..... ...........+..++..++++++.+.++..++.
T Consensus 32 ~L~P~~v~~~v~~~~~~~~---~~~~~~~~~~~l~~~l~~~~~el~~le~~k~~id 84 (180)
T PF04678_consen 32 YLRPKQVKEAVHRLLPLLN---VEEYQNSRERQLRKRLEELRQELAPLEKIKQEID 84 (180)
T ss_pred eECHHHHHHHHHHHhcccc---chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55563 6666666554331 1112234566677777778777777766655554
No 125
>PF14775 NYD-SP28_assoc: Sperm tail C-terminal domain
Probab=21.02 E-value=2.3e+02 Score=17.95 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHh
Q 045249 92 YEDAMQELEKEKKRGKMIEEEKKK 115 (211)
Q Consensus 92 ~~~l~~el~k~kk~~~~l~~~~~~ 115 (211)
...+..+.+.++++|.+++.+.++
T Consensus 35 R~~l~~e~~~L~~qN~eLr~lLkq 58 (60)
T PF14775_consen 35 RAALIQEKESLEQQNEELRSLLKQ 58 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344666778888888888866654
No 126
>cd04751 Commd3 COMM_Domain containing protein 3. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=20.96 E-value=1.4e+02 Score=20.68 Aligned_cols=23 Identities=17% Similarity=0.382 Sum_probs=19.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHH
Q 045249 132 DMGIEELEEYLKAMKKLKGKVEM 154 (211)
Q Consensus 132 ~Ls~eeL~~L~~~Le~~l~~V~~ 154 (211)
.+++++|+.|...|.+..+.+..
T Consensus 70 ~c~~e~L~~Li~~Lk~A~~~~e~ 92 (95)
T cd04751 70 TCTLEQLQDLVNKLKDAAKNIER 92 (95)
T ss_pred EeCHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999999998887753
No 127
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=20.95 E-value=2e+02 Score=17.14 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=13.7
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHH
Q 045249 87 QHNKEYEDAMQELEKEKKRGKMIE 110 (211)
Q Consensus 87 ~l~~~~~~l~~el~k~kk~~~~l~ 110 (211)
.|...|+.|..+.+.++++++.+.
T Consensus 9 ~LK~~yd~Lk~~~~~L~~E~~~L~ 32 (45)
T PF02183_consen 9 ALKASYDSLKAEYDSLKKENEKLR 32 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666666655555554
No 128
>cd00468 HIT_like HIT family: HIT (Histidine triad) proteins, named for a motif related to the sequence HxHxH/Qxx (x, a hydrophobic amino acid), are a superfamily of nucleotide hydrolases and transferases, which act on the alpha-phosphate of ribonucleotides. On the basis of sequence, substrate specificity, structure, evolution and mechanism, HIT proteins are classified in the literacture into three major branches: the Hint branch, which consists of adenosine 5' -monophosphoramide hydrolases, the Fhit branch, that consists of diadenosine polyphosphate hydrolases, and the GalT branch consisting of specific nucloside monophosphate transferases. Further sequence analysis reveals several new closely related, yet uncharacterized subgroups.
Probab=20.88 E-value=1.6e+02 Score=19.08 Aligned_cols=25 Identities=12% Similarity=0.303 Sum_probs=19.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHH
Q 045249 129 IIDDMGIEELEEYLKAMKKLKGKVE 153 (211)
Q Consensus 129 ~l~~Ls~eeL~~L~~~Le~~l~~V~ 153 (211)
++.+|+.+++.++...+.+..+.++
T Consensus 31 ~~~~l~~~~~~~l~~~~~~~~~~l~ 55 (86)
T cd00468 31 TLPDLDEALLADLVITAQRVAAELE 55 (86)
T ss_pred ChhHCCHHHHHHHHHHHHHHHHHHH
Confidence 7788899998888888877766554
No 129
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=20.87 E-value=3.1e+02 Score=19.22 Aligned_cols=21 Identities=14% Similarity=0.302 Sum_probs=14.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHH
Q 045249 85 VQQHNKEYEDAMQELEKEKKR 105 (211)
Q Consensus 85 ~~~l~~~~~~l~~el~k~kk~ 105 (211)
...+..++++|++++.....+
T Consensus 4 ~s~I~~eIekLqe~lk~~e~k 24 (92)
T PF07820_consen 4 SSKIREEIEKLQEQLKQAETK 24 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888887766544
No 130
>PRK06851 hypothetical protein; Provisional
Probab=20.86 E-value=5.3e+02 Score=22.76 Aligned_cols=28 Identities=25% Similarity=0.246 Sum_probs=21.8
Q ss_pred hhhHHHHHHHHhhhhccceEEEEeCCCC
Q 045249 24 RSGLFSKAMELCVLCGAEVGIIVFSPNG 51 (211)
Q Consensus 24 r~GL~KKa~ELs~LC~veva~ivfsp~g 51 (211)
|..|+|++.+-..-+|-+|..+..+.++
T Consensus 43 KStl~~~i~~~~~~~g~~Ve~~~~~~d~ 70 (367)
T PRK06851 43 KSTLMKKIGEEFLEKGYDVEFLHCSSDN 70 (367)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEEcCCCC
Confidence 5678888777777788999888877764
No 131
>COG0216 PrfA Protein chain release factor A [Translation, ribosomal structure and biogenesis]
Probab=20.69 E-value=2.4e+02 Score=24.75 Aligned_cols=42 Identities=21% Similarity=0.321 Sum_probs=21.3
Q ss_pred chhhHHHHhhhcCCCCccc--ccCccchhhhhHHHHHHHHHHHH
Q 045249 60 DFDKILNRYLDQNHSSLDE--VNTIPCVQQHNKEYEDAMQELEK 101 (211)
Q Consensus 60 sv~~Vl~ry~~~~~~~~~~--~~~~~~~~~l~~~~~~l~~el~k 101 (211)
.++++.+||.......... .........+.+++..|..-+.+
T Consensus 8 kl~~~~~r~~el~~~L~~p~v~~d~~~~~~lske~a~l~~iv~~ 51 (363)
T COG0216 8 KLESLLERYEELEALLSDPEVISDPDEYRKLSKEYAELEPIVEK 51 (363)
T ss_pred HHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHHHHH
Confidence 3577888886644211111 11234455566666666554433
No 132
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=20.66 E-value=1.7e+02 Score=18.75 Aligned_cols=23 Identities=17% Similarity=0.107 Sum_probs=16.2
Q ss_pred chhhhhHHHHHHHHHHHHHHHHh
Q 045249 84 CVQQHNKEYEDAMQELEKEKKRG 106 (211)
Q Consensus 84 ~~~~l~~~~~~l~~el~k~kk~~ 106 (211)
.+.+++++|.-|+.+++.++.+.
T Consensus 26 sV~El~eRIalLq~EIeRlkAe~ 48 (65)
T COG5509 26 SVAELEERIALLQAEIERLKAEL 48 (65)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777888887777776654
No 133
>TIGR03726 strep_RK_lipo putative cross-wall-targeting lipoprotein signal. The YSIRK signal domain targets proteins to the cross-wall, or septum, of dividing Gram-positive bacterial. Lipoprotein signal motifs direct a characteristic N-terminal cleavage and lipid modification for membrane anchoring. This Streptococcal-only signal peptide variant appears to be a hybrid between the two, likely directing protein targeting of nascent surface lipoproteins to the cross-wall. Nearly all members of this family have the characteristic LPXTG cell wall anchor signal at the C-terminus.
Probab=20.42 E-value=48 Score=18.70 Aligned_cols=16 Identities=44% Similarity=0.866 Sum_probs=11.0
Q ss_pred HHHHHHHhhhhccceE
Q 045249 28 FSKAMELCVLCGAEVG 43 (211)
Q Consensus 28 ~KKa~ELs~LC~veva 43 (211)
|+|-.-.-+||||-.+
T Consensus 3 FRKsK~~~tLCGa~Lg 18 (34)
T TIGR03726 3 FRKSKKYRTLCGAALG 18 (34)
T ss_pred chhhHHHHHHHHHHHH
Confidence 3566667789987654
No 134
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=20.37 E-value=2e+02 Score=20.80 Aligned_cols=15 Identities=20% Similarity=0.213 Sum_probs=5.7
Q ss_pred hHHHHHHHHHHHHHH
Q 045249 89 NKEYEDAMQELEKEK 103 (211)
Q Consensus 89 ~~~~~~l~~el~k~k 103 (211)
.+++..+.+++..++
T Consensus 14 e~~l~~l~~el~~LK 28 (110)
T PRK13169 14 EQNLGVLLKELGALK 28 (110)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 135
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=20.31 E-value=2.8e+02 Score=24.49 Aligned_cols=21 Identities=24% Similarity=0.227 Sum_probs=17.3
Q ss_pred hhhhhhhhhhHHHHHHHHhhh
Q 045249 17 QVTFSKRRSGLFSKAMELCVL 37 (211)
Q Consensus 17 ~vTF~KRr~GL~KKa~ELs~L 37 (211)
--++.+|-..|.+|+.+|+..
T Consensus 263 Ld~i~~rl~~L~~~~~~l~~~ 283 (388)
T PF04912_consen 263 LDSIERRLKSLLSELEELAEK 283 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 456889999999999998754
No 136
>PF03250 Tropomodulin: Tropomodulin; InterPro: IPR004934 Actin filaments have an intrinsic polarity, each with a fast-growing (barbed) end and a slow-growing (pointed) end. To regulate the dynamics at these ends, capping proteins have evolved that specifically bind to either the barbed or the pointed ends of the filament, where they block the association and dissociation of monomers. Pointed ends, for which actin monomers have significantly lower association and dissociation rate-constants than for barbed, are capped by either the Arp2/3 complex or tropomodulins []. Tropomodulin is a novel tropomyosin regulatory protein that binds to the end of erythrocyte tropomyosin and blocks head-to-tail association of tropomyosin along actin filaments []. Limited proteolysis shows this protein is composed of two domains. The unstructured tropomyosin-binding region at the N terminus has an actin pointed-end-capping activity that is dramatically up-regulated by tropomyosin coating of the actin filament[]. The second region is found near the C terminus. This tropomyosin-independent capping-domain caps pure actin. ; GO: 0005523 tropomyosin binding, 0005856 cytoskeleton
Probab=20.31 E-value=70 Score=24.39 Aligned_cols=19 Identities=26% Similarity=0.492 Sum_probs=15.0
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q 045249 129 IIDDMGIEELEEYLKAMKK 147 (211)
Q Consensus 129 ~l~~Ls~eeL~~L~~~Le~ 147 (211)
-|..||.+||.+|+..|+.
T Consensus 20 lL~~LS~EEL~~L~~el~e 38 (147)
T PF03250_consen 20 LLAKLSPEELEELENELEE 38 (147)
T ss_pred HHHhCCHHHHHHHHHHHHh
Confidence 4567899999999977654
No 137
>PF13252 DUF4043: Protein of unknown function (DUF4043)
Probab=20.26 E-value=45 Score=29.13 Aligned_cols=25 Identities=28% Similarity=0.405 Sum_probs=18.6
Q ss_pred HHhhhhccceEEEEeCCCCc--ccccC
Q 045249 33 ELCVLCGAEVGIIVFSPNGK--IFLAG 57 (211)
Q Consensus 33 ELs~LC~veva~ivfsp~gk--~~~f~ 57 (211)
.-+.|||++++++.|+..+. .|.|.
T Consensus 273 ~ralLlGaQA~~~A~G~~~~~~~~~w~ 299 (341)
T PF13252_consen 273 ARALLLGAQALVIAFGKSGSGMRFFWV 299 (341)
T ss_pred eeeeeechhheeeeeeccCCCcccccc
Confidence 45789999999999998443 44443
No 138
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion. Such a region is also found in other proteins [, ]: Yeast cytosine deaminase (3.5.4.1 from EC) (gene FCY1) which transforms cytosine into uracil. Mammalian apolipoprotein B mRNA editing protein, responsible for the postranscriptional editing of a CAA codon into a UAA (stop) codon in the APOB mRNA. Riboflavin biosynthesis protein ribG, which converts 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1H,3H)-pyrimidinedione 5'-phosphate. Bacillus cereus blasticidin-S deaminase (3.5.4.23 from EC), which catalyzes the deamination of the cytosine moiety of the antibiotics blasticidin S, cytomycin and acetylblasticidin S. Bacillus subtilis protein comEB. This protein is required for the binding and uptake of transforming DNA. B. subtilis hypothetical protein yaaJ. Escherichia coli hypothetical protein yfhC. Yeast hypothetical protein YJL035c. ; GO: 0008270 zinc ion binding, 0016787 hydrolase activity; PDB: 3MPZ_C 3R2N_C 1WKQ_A 1TIY_B 2B3J_C 2O7P_B 2OBC_A 2G6V_B 2D30_B 2D5N_B ....
Probab=20.23 E-value=99 Score=21.12 Aligned_cols=29 Identities=31% Similarity=0.551 Sum_probs=23.0
Q ss_pred hHHHHHHHHhhhh----ccceEEEEeCCCCccc
Q 045249 26 GLFSKAMELCVLC----GAEVGIIVFSPNGKIF 54 (211)
Q Consensus 26 GL~KKa~ELs~LC----~veva~ivfsp~gk~~ 54 (211)
-+++.|-+++... ...|+.||++++|+..
T Consensus 6 ~~m~~a~~~a~~s~~~~~~~vgaviv~~~~~~i 38 (102)
T PF00383_consen 6 EFMRIAIELAKRSRPCGNFPVGAVIVDPDGKII 38 (102)
T ss_dssp HHHHHHHHHHHTHBTTTSSSEEEEEEETTTEEE
T ss_pred HHHHHHHHHHHhccccCCCCEEEEEEeccCccE
Confidence 4677888887777 8999999999877643
No 139
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription]
Probab=20.23 E-value=6.5e+02 Score=22.72 Aligned_cols=17 Identities=29% Similarity=0.419 Sum_probs=15.1
Q ss_pred hhhhhhHHHHHHHHhhh
Q 045249 21 SKRRSGLFSKAMELCVL 37 (211)
Q Consensus 21 ~KRr~GL~KKa~ELs~L 37 (211)
++||.-|=-+..||+.|
T Consensus 242 RRRR~nIN~~IkeLg~l 258 (411)
T KOG1318|consen 242 RRRRENINDRIKELGQL 258 (411)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 57888899999999998
No 140
>PF08796 DUF1797: Protein of unknown function (DUF1797); InterPro: IPR014904 The function of this protein is unknown. It forms a central anti-parallel beta sheet with flanking alpha helical regions. ; PDB: 2FFG_B.
Probab=20.20 E-value=69 Score=21.05 Aligned_cols=19 Identities=21% Similarity=0.352 Sum_probs=15.5
Q ss_pred hccceEEEEeCCCCccccc
Q 045249 38 CGAEVGIIVFSPNGKIFLA 56 (211)
Q Consensus 38 C~veva~ivfsp~gk~~~f 56 (211)
-|+++|-|.|.+....|+.
T Consensus 24 ~G~~~c~V~y~~~t~~F~l 42 (67)
T PF08796_consen 24 EGVEVCTVTYDQETETFEL 42 (67)
T ss_dssp TTEEEEEEEEETTTTEEEE
T ss_pred CCEEEEEEEEECCCCeEEE
Confidence 4899999999998776544
No 141
>KOG0184 consensus 20S proteasome, regulatory subunit alpha type PSMA3/PRE10 [Posttranslational modification, protein turnover, chaperones]
Probab=20.20 E-value=52 Score=26.99 Aligned_cols=21 Identities=29% Similarity=0.664 Sum_probs=16.8
Q ss_pred hhhhccceEEEEeCCCCcccc
Q 045249 35 CVLCGAEVGIIVFSPNGKIFL 55 (211)
Q Consensus 35 s~LC~veva~ivfsp~gk~~~ 55 (211)
||=.|-+.|+-+|||+|+.|.
T Consensus 3 sIGtGyDls~s~fSpdGrvfQ 23 (254)
T KOG0184|consen 3 SIGTGYDLSASTFSPDGRVFQ 23 (254)
T ss_pred cccccccccceeeCCCCceeh
Confidence 345678889999999999763
No 142
>PRK00708 sec-independent translocase; Provisional
Probab=20.14 E-value=2.3e+02 Score=22.95 Aligned_cols=18 Identities=39% Similarity=0.504 Sum_probs=12.1
Q ss_pred HHHhhhhccceEEEEeCCCC
Q 045249 32 MELCVLCGAEVGIIVFSPNG 51 (211)
Q Consensus 32 ~ELs~LC~veva~ivfsp~g 51 (211)
.||-++. =|+||||+|..
T Consensus 7 ~ELlvI~--vVaLvV~GPkr 24 (209)
T PRK00708 7 SELLVIA--IVLIVVVGPKD 24 (209)
T ss_pred HHHHHHH--HHHHhhcCchH
Confidence 3555553 36789999876
No 143
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=20.07 E-value=1.9e+02 Score=19.47 Aligned_cols=21 Identities=14% Similarity=0.148 Sum_probs=11.3
Q ss_pred hhhHHHHHHHHHHHHHHHHhH
Q 045249 87 QHNKEYEDAMQELEKEKKRGK 107 (211)
Q Consensus 87 ~l~~~~~~l~~el~k~kk~~~ 107 (211)
.+.++..+|+.++.+++.+++
T Consensus 4 ei~eEn~~Lk~eiqkle~ELq 24 (76)
T PF07334_consen 4 EIQEENARLKEEIQKLEAELQ 24 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666665554433
No 144
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=20.05 E-value=3.4e+02 Score=19.39 Aligned_cols=22 Identities=9% Similarity=0.199 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 045249 137 ELEEYLKAMKKLKGKVEMRVNEI 159 (211)
Q Consensus 137 eL~~L~~~Le~~l~~V~~R~~~L 159 (211)
+...| ..+...|..+..|++.+
T Consensus 79 qgktL-~~I~~~L~~inkRLD~~ 100 (102)
T PF01519_consen 79 QGKTL-QLILKTLQSINKRLDKM 100 (102)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHHhhc
Confidence 34444 66777888888888776
No 145
>PRK10132 hypothetical protein; Provisional
Probab=20.03 E-value=3.4e+02 Score=19.46 Aligned_cols=55 Identities=11% Similarity=0.050 Sum_probs=34.3
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 045249 87 QHNKEYEDAMQELEKEKKRGKMIEEEKKKNKSNGRFWWQEGNIIDDMGIEELEEYLKAMKKLKGKVEMRVNE 158 (211)
Q Consensus 87 ~l~~~~~~l~~el~k~kk~~~~l~~~~~~~~~~~~~~~~~G~~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~ 158 (211)
.+..+.+.|..++..+-...++ +.+ +..+-+-+++..+...++..|+..+++...
T Consensus 9 ~~~~q~e~L~~Dl~~L~~~le~---ll~--------------~~~~~~~~~~~~lR~r~~~~L~~ar~~l~~ 63 (108)
T PRK10132 9 DVDDGVQDIQNDVNQLADSLES---VLK--------------SWGSDAKGEAEAARRKAQALLKETRARMHG 63 (108)
T ss_pred hhhhHHHHHHHHHHHHHHHHHH---HHH--------------HHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4555666666666555444333 222 223345677888888888888888877663
Done!