Query 045249
Match_columns 211
No_of_seqs 156 out of 1544
Neff 8.2
Searched_HMMs 29240
Date Mon Mar 25 19:59:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045249.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045249hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1egw_A MADS box transcription 100.0 2.2E-38 7.6E-43 214.0 4.8 72 1-72 1-72 (77)
2 3p57_A Myocyte-specific enhanc 100.0 3.2E-38 1.1E-42 218.2 5.1 74 1-74 1-74 (90)
3 1mnm_A Protein (MCM1 transcrip 100.0 1E-35 3.5E-40 209.0 4.2 70 1-70 17-86 (100)
4 1hbx_A SRF, serum response fac 100.0 1.9E-35 6.5E-40 205.1 3.5 70 1-70 11-80 (92)
5 1k6o_B SRF, serum response fac 100.0 9.5E-35 3.2E-39 205.4 3.4 68 1-68 10-77 (103)
6 3twe_A Alpha4H; unknown functi 77.6 3.3 0.00011 20.6 3.1 20 86-105 4-23 (27)
7 1p9i_A Cortexillin I/GCN4 hybr 68.7 8.6 0.0003 19.6 3.5 27 135-161 1-27 (31)
8 1z56_A Ligase interacting fact 67.6 9.8 0.00033 30.2 5.4 57 8-71 117-176 (246)
9 3he5_A Synzip1; heterodimeric 63.3 18 0.00061 20.4 6.5 18 140-157 31-48 (49)
10 2l5g_B Putative uncharacterize 62.6 14 0.00048 21.0 4.0 25 86-110 12-36 (42)
11 1fxk_A Prefoldin; archaeal pro 61.0 34 0.0012 22.9 6.9 65 59-137 1-65 (107)
12 1t6f_A Geminin; coiled-coil, c 60.2 10 0.00035 20.8 3.0 25 86-110 10-34 (37)
13 2yy0_A C-MYC-binding protein; 58.3 19 0.00064 21.6 4.4 29 83-111 19-47 (53)
14 1j1d_C Troponin I, TNI; THIN f 53.6 59 0.002 23.3 9.3 30 129-158 54-83 (133)
15 4fi5_A Nucleoprotein; structur 51.7 57 0.0019 22.6 6.4 70 82-161 21-90 (113)
16 2oqq_A Transcription factor HY 49.8 34 0.0012 19.4 4.1 30 84-113 11-40 (42)
17 2k48_A Nucleoprotein; viral pr 47.0 67 0.0023 22.0 6.7 67 81-160 33-102 (107)
18 2wvr_A Geminin; DNA replicatio 47.0 48 0.0017 25.5 6.0 26 85-110 117-142 (209)
19 2w6b_A RHO guanine nucleotide 45.0 43 0.0015 20.1 4.3 28 83-110 17-44 (56)
20 3mwp_A Nucleoprotein; structur 44.2 18 0.00063 31.5 3.6 55 97-155 70-124 (577)
21 2rpa_A Katanin P60 ATPase-cont 44.0 9.8 0.00034 24.8 1.5 56 28-101 16-71 (78)
22 1j1d_B Troponin T, TNT; THIN f 43.9 34 0.0012 23.6 4.4 31 129-159 38-68 (106)
23 1j1e_C Troponin I, TNI; THIN f 43.6 1E+02 0.0035 23.3 8.3 27 129-155 54-80 (180)
24 3ghg_A Fibrinogen alpha chain; 42.5 62 0.0021 28.7 6.7 24 87-110 114-137 (562)
25 1ytz_T Troponin T; muscle, THI 42.3 81 0.0028 21.7 8.2 31 128-158 37-67 (107)
26 1ik9_A DNA repair protein XRCC 41.8 1.2E+02 0.0039 23.5 7.7 25 138-162 177-201 (213)
27 1uii_A Geminin; human, DNA rep 41.2 38 0.0013 22.3 4.0 28 85-112 48-75 (83)
28 3tnu_B Keratin, type II cytosk 40.7 44 0.0015 23.6 4.8 65 83-158 36-100 (129)
29 2l5g_A GPS2 protein, G protein 40.3 41 0.0014 18.5 3.4 30 133-162 8-37 (38)
30 3tnu_A Keratin, type I cytoske 39.2 46 0.0016 23.6 4.7 65 83-158 38-102 (131)
31 3t98_B Nucleoporin NUP58/NUP45 38.5 87 0.003 20.9 7.7 65 85-160 7-71 (93)
32 3tso_C RAB11 family-interactin 38.3 73 0.0025 20.4 4.9 31 129-159 10-40 (75)
33 2lw1_A ABC transporter ATP-bin 37.5 85 0.0029 20.5 8.3 54 88-153 20-73 (89)
34 2oa5_A Hypothetical protein BQ 37.3 1E+02 0.0035 21.3 6.7 54 92-152 10-63 (110)
35 3m91_A Proteasome-associated A 37.3 65 0.0022 19.1 6.1 27 89-115 8-34 (51)
36 2hv8_D RAB11 family-interactin 36.8 76 0.0026 19.7 5.2 33 129-161 19-51 (64)
37 2dl1_A Spartin; SPG20, MIT, st 36.3 1E+02 0.0036 21.5 5.9 34 130-163 65-98 (116)
38 2zqm_A Prefoldin beta subunit 36.0 95 0.0032 20.9 5.9 12 59-70 6-17 (117)
39 3uux_B Mitochondrial division 35.9 1.3E+02 0.0044 23.8 7.1 30 135-164 200-229 (242)
40 1m2d_A [2Fe-2S] ferredoxin; th 35.1 21 0.00072 24.4 2.2 32 38-70 59-91 (110)
41 1deq_A Fibrinogen (alpha chain 33.8 75 0.0026 27.0 5.7 20 87-106 64-83 (390)
42 3nr7_A DNA-binding protein H-N 33.7 1E+02 0.0035 20.3 7.4 11 131-141 71-81 (86)
43 3qne_A Seryl-tRNA synthetase, 32.5 1.7E+02 0.006 25.6 8.1 71 84-161 34-106 (485)
44 1wlq_A Geminin; coiled-coil; 2 32.0 51 0.0017 21.6 3.5 28 85-112 40-67 (83)
45 1txp_A HnRNP C, heterogeneous 31.5 57 0.0019 16.7 3.3 18 136-153 6-23 (28)
46 2zvv_Y Cyclin-dependent kinase 30.8 5.2 0.00018 20.0 -1.1 12 14-25 15-26 (26)
47 1ez3_A Syntaxin-1A; three heli 30.5 1.3E+02 0.0044 20.5 7.7 68 87-162 9-76 (127)
48 1sse_A AP-1 like transcription 30.0 25 0.00087 19.0 1.4 14 198-211 5-18 (35)
49 3sl9_C B-cell CLL/lymphoma 9 p 29.9 86 0.0029 18.2 4.0 24 127-150 4-27 (55)
50 3ghg_A Fibrinogen alpha chain; 29.8 32 0.0011 30.5 2.9 20 87-106 61-80 (562)
51 1dd4_C 50S ribosomal protein L 29.7 27 0.00092 19.6 1.6 21 129-149 9-29 (40)
52 2zxx_A Geminin; coiled-coil, c 28.7 65 0.0022 20.9 3.5 28 85-112 36-63 (79)
53 2dq0_A Seryl-tRNA synthetase; 27.8 1.9E+02 0.0065 25.0 7.5 72 83-161 31-104 (455)
54 2ky6_A Mediator of RNA polymer 26.9 33 0.0011 25.6 2.1 36 35-70 116-159 (166)
55 1nkp_B MAX protein, MYC proto- 26.3 1E+02 0.0036 19.6 4.4 31 83-113 47-77 (83)
56 1a93_B MAX protein, coiled coi 26.2 84 0.0029 16.9 4.2 24 87-110 4-27 (34)
57 1g6u_A Domain swapped dimer; d 26.2 91 0.0031 17.4 5.1 24 131-154 15-38 (48)
58 3fx7_A Putative uncharacterize 26.1 1.3E+02 0.0045 20.1 4.9 29 133-161 6-34 (94)
59 4dzo_A Mitotic spindle assembl 24.8 79 0.0027 22.2 3.8 21 90-110 4-24 (123)
60 1lj9_A Transcriptional regulat 24.7 1.2E+02 0.0043 20.5 5.0 31 129-159 111-141 (144)
61 2ic9_A Nucleocapsid protein; h 24.7 1.6E+02 0.0056 19.7 7.5 72 82-163 4-75 (96)
62 2z5i_A TM, general control pro 24.3 1.2E+02 0.004 17.9 4.5 29 84-112 13-41 (52)
63 3nrf_A APAG protein; structura 23.9 1.9 6.6E-05 29.9 -4.7 41 11-56 22-62 (106)
64 2phn_A F420-0:gamma-glutamyl l 23.6 15 0.00052 29.5 -0.2 28 33-60 138-165 (254)
65 2k1v_A Insulin-like peptide IN 23.2 26 0.00089 17.7 0.7 10 31-40 14-23 (26)
66 1fio_A SSO1 protein; four heli 21.8 2.4E+02 0.0083 20.7 9.0 62 87-161 6-74 (196)
67 1zav_U 50S ribosomal protein L 20.9 20 0.00069 18.8 -0.0 20 129-148 9-28 (30)
68 3rmq_A Uncharacterized protein 20.5 18 0.00061 25.2 -0.4 12 33-44 31-42 (116)
69 4gmn_B 60S ribosomal protein L 20.4 28 0.00096 20.3 0.5 11 16-26 16-26 (49)
70 1s94_A S-syntaxin; three helix 20.3 2.6E+02 0.0088 20.4 8.5 68 87-162 40-107 (180)
71 3teq_A Stromal interaction mol 20.2 2.1E+02 0.0072 19.4 6.2 31 127-158 56-86 (101)
72 2ke4_A CDC42-interacting prote 20.2 2E+02 0.007 19.2 8.3 64 84-153 16-79 (98)
No 1
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=100.00 E-value=2.2e-38 Score=213.95 Aligned_cols=72 Identities=46% Similarity=0.803 Sum_probs=70.0
Q ss_pred CcccceeEEcCCCccchhhhhhhhhhHHHHHHHHhhhhccceEEEEeCCCCcccccCCCchhhHHHHhhhcC
Q 045249 1 GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPDFDKILNRYLDQN 72 (211)
Q Consensus 1 GR~Ki~i~~I~n~~~R~vTF~KRr~GL~KKa~ELs~LC~veva~ivfsp~gk~~~f~~psv~~Vl~ry~~~~ 72 (211)
||+||+|++|+|+++|+|||+|||+||||||.||||||||+||+|||||+|++|+|++|+|+.||+||...+
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~~~~~il~ry~~~~ 72 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYN 72 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHC-
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCCCHHHHHHHHHhcc
Confidence 899999999999999999999999999999999999999999999999999999999999999999998855
No 2
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=100.00 E-value=3.2e-38 Score=218.21 Aligned_cols=74 Identities=45% Similarity=0.785 Sum_probs=71.6
Q ss_pred CcccceeEEcCCCccchhhhhhhhhhHHHHHHHHhhhhccceEEEEeCCCCcccccCCCchhhHHHHhhhcCCC
Q 045249 1 GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPDFDKILNRYLDQNHS 74 (211)
Q Consensus 1 GR~Ki~i~~I~n~~~R~vTF~KRr~GL~KKa~ELs~LC~veva~ivfsp~gk~~~f~~psv~~Vl~ry~~~~~~ 74 (211)
||+||+|++|+|+++|+|||+|||.||||||.||||||||+||+|||||+|++|+|++|+|+.||+||...+.+
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~~~ 74 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEP 74 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCCSC
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999987643
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=100.00 E-value=1e-35 Score=209.03 Aligned_cols=70 Identities=40% Similarity=0.651 Sum_probs=68.7
Q ss_pred CcccceeEEcCCCccchhhhhhhhhhHHHHHHHHhhhhccceEEEEeCCCCcccccCCCchhhHHHHhhh
Q 045249 1 GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPDFDKILNRYLD 70 (211)
Q Consensus 1 GR~Ki~i~~I~n~~~R~vTF~KRr~GL~KKa~ELs~LC~veva~ivfsp~gk~~~f~~psv~~Vl~ry~~ 70 (211)
||+||+|++|+|+++|+|||+|||.||||||.||||||||+||||||||+|++|+|++|+++.|+++|..
T Consensus 17 gR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sps~~~il~r~~G 86 (100)
T 1mnm_A 17 ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPKFEPIVTQQEG 86 (100)
T ss_dssp CCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECTTTTHHHHSHHH
T ss_pred CccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCCCHHHHHHHhhC
Confidence 8999999999999999999999999999999999999999999999999999999999999999999965
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=100.00 E-value=1.9e-35 Score=205.10 Aligned_cols=70 Identities=30% Similarity=0.508 Sum_probs=68.2
Q ss_pred CcccceeEEcCCCccchhhhhhhhhhHHHHHHHHhhhhccceEEEEeCCCCcccccCCCchhhHHHHhhh
Q 045249 1 GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPDFDKILNRYLD 70 (211)
Q Consensus 1 GR~Ki~i~~I~n~~~R~vTF~KRr~GL~KKa~ELs~LC~veva~ivfsp~gk~~~f~~psv~~Vl~ry~~ 70 (211)
||+||+|++|+|+++|+|||+|||.||||||+||||||||+||+|||||+|++|+|++|+++.||++|..
T Consensus 11 gR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~~~~~~i~~~~G 80 (92)
T 1hbx_A 11 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSETG 80 (92)
T ss_dssp CSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECGGGGGGTSSHHH
T ss_pred CcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCCCHHHHHhhhcc
Confidence 8999999999999999999999999999999999999999999999999999999999999999998854
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=100.00 E-value=9.5e-35 Score=205.40 Aligned_cols=68 Identities=31% Similarity=0.529 Sum_probs=66.9
Q ss_pred CcccceeEEcCCCccchhhhhhhhhhHHHHHHHHhhhhccceEEEEeCCCCcccccCCCchhhHHHHh
Q 045249 1 GRQKIQIKKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPDFDKILNRY 68 (211)
Q Consensus 1 GR~Ki~i~~I~n~~~R~vTF~KRr~GL~KKa~ELs~LC~veva~ivfsp~gk~~~f~~psv~~Vl~ry 68 (211)
||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|+|++|+|+.||+++
T Consensus 10 gR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~~~~~vi~~~ 77 (103)
T 1k6o_B 10 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRKLQPMITSE 77 (103)
T ss_dssp CSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECGGGGGGTSSH
T ss_pred CcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCccHHHHHHhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999985
No 6
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=77.57 E-value=3.3 Score=20.55 Aligned_cols=20 Identities=35% Similarity=0.463 Sum_probs=12.8
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 045249 86 QQHNKEYEDAMQELEKEKKR 105 (211)
Q Consensus 86 ~~l~~~~~~l~~el~k~kk~ 105 (211)
+.+.++++.|++.+.+++++
T Consensus 4 delykeledlqerlrklrkk 23 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKK 23 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45666677777666666554
No 7
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=68.72 E-value=8.6 Score=19.65 Aligned_cols=27 Identities=15% Similarity=0.449 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045249 135 IEELEEYLKAMKKLKGKVEMRVNEIMM 161 (211)
Q Consensus 135 ~eeL~~L~~~Le~~l~~V~~R~~~L~~ 161 (211)
+++|..|...|+.--+.+..+.++|+.
T Consensus 1 mdqlnallasleaenkqlkakveella 27 (31)
T 1p9i_A 1 MDQLNALLASLEAENKQLKAKVEELLA 27 (31)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788888888888888888888864
No 8
>1z56_A Ligase interacting factor 1; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}
Probab=67.64 E-value=9.8 Score=30.21 Aligned_cols=57 Identities=18% Similarity=0.222 Sum_probs=7.9
Q ss_pred EEcCCCccchhhhhhhhhhHHHHHHHHhhhhccceEEEEeCCCCcccccCCC---chhhHHHHhhhc
Q 045249 8 KKLEDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLAGHP---DFDKILNRYLDQ 71 (211)
Q Consensus 8 ~~I~n~~~R~vTF~KRr~GL~KKa~ELs~LC~veva~ivfsp~gk~~~f~~p---sv~~Vl~ry~~~ 71 (211)
-.|+....-++|+.||-.||..|..+|+.--+-+=++ .+|.|+.- .+-.+-++|.+.
T Consensus 117 ~~iev~~~~~itmrkri~~Itqrlg~ltL~~~~~~eI-------dLFewA~~L~q~i~~ln~k~~~~ 176 (246)
T 1z56_A 117 CRMQDDEVWKVVMELESSAIIRKIAELTLHPVKKGEI-------DLFEMADKLYKDICCVNDSYRNI 176 (246)
T ss_dssp -------------------------------------------------CTTSGGGTTHHHHHHHHT
T ss_pred cCceeCCEEEEEEeehhhHHHhhheeEEeecCccchh-------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455667779999999999999987765322211111 25555322 344666777653
No 9
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=63.34 E-value=18 Score=20.39 Aligned_cols=18 Identities=6% Similarity=0.261 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 045249 140 EYLKAMKKLKGKVEMRVN 157 (211)
Q Consensus 140 ~L~~~Le~~l~~V~~R~~ 157 (211)
+|...|++-+.+++.+++
T Consensus 31 dliaylekeianlrkkie 48 (49)
T 3he5_A 31 DLIAYLEKEIANLRKKIE 48 (49)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhc
Confidence 566677777777777664
No 10
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=62.57 E-value=14 Score=21.02 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=14.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHhHHHH
Q 045249 86 QQHNKEYEDAMQELEKEKKRGKMIE 110 (211)
Q Consensus 86 ~~l~~~~~~l~~el~k~kk~~~~l~ 110 (211)
+....+|++..+++..++++.++++
T Consensus 12 ~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 12 DRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666655554
No 11
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=60.99 E-value=34 Score=22.90 Aligned_cols=65 Identities=11% Similarity=0.198 Sum_probs=31.4
Q ss_pred CchhhHHHHhhhcCCCCcccccCccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCccccccCCCCCCCCHHH
Q 045249 59 PDFDKILNRYLDQNHSSLDEVNTIPCVQQHNKEYEDAMQELEKEKKRGKMIEEEKKKNKSNGRFWWQEGNIIDDMGIEE 137 (211)
Q Consensus 59 psv~~Vl~ry~~~~~~~~~~~~~~~~~~~l~~~~~~l~~el~k~kk~~~~l~~~~~~~~~~~~~~~~~G~~l~~Ls~ee 137 (211)
|.++..+.+|.... .....+..++..+..++.....-.+++..+ .....+|.-.|.-+-..+.++
T Consensus 1 ~~~Q~~i~~f~~lq----------~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l----~~d~~vy~~iG~vfv~~~~~e 65 (107)
T 1fxk_A 1 QNVQHQLAQFQQLQ----------QQAQAISVQKQTVEMQINETQKALEELSRA----ADDAEVYKSSGNILIRVAKDE 65 (107)
T ss_dssp CCHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----CTTCCEEEEETTEEEEECHHH
T ss_pred ChHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC----CCCchHHHHHhHHHHhccHHH
Confidence 66788888886632 233344444444444443333333333311 134456655555444445444
No 12
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=60.22 E-value=10 Score=20.76 Aligned_cols=25 Identities=28% Similarity=0.373 Sum_probs=18.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHhHHHH
Q 045249 86 QQHNKEYEDAMQELEKEKKRGKMIE 110 (211)
Q Consensus 86 ~~l~~~~~~l~~el~k~kk~~~~l~ 110 (211)
..|+..++.-.+++..++.+|.++.
T Consensus 10 ekLhk~ie~KdeeIa~Lk~eN~eL~ 34 (37)
T 1t6f_A 10 EKLHKEIEQKDNEIARLKKENKELA 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 4567777777778888888877665
No 13
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=58.31 E-value=19 Score=21.58 Aligned_cols=29 Identities=14% Similarity=0.206 Sum_probs=19.9
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHhHHHHH
Q 045249 83 PCVQQHNKEYEDAMQELEKEKKRGKMIEE 111 (211)
Q Consensus 83 ~~~~~l~~~~~~l~~el~k~kk~~~~l~~ 111 (211)
..++.|..+...|+.+++.++++++++..
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777666653
No 14
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=53.61 E-value=59 Score=23.34 Aligned_cols=30 Identities=17% Similarity=0.333 Sum_probs=24.9
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 045249 129 IIDDMGIEELEEYLKAMKKLKGKVEMRVNE 158 (211)
Q Consensus 129 ~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~ 158 (211)
++++|+.++|+++-..|.+.+..+.+-+..
T Consensus 54 ~id~ls~~~L~e~~keLh~~I~~LEeEKYD 83 (133)
T 1j1d_C 54 ELAGLGFAELQDLARQLHARVDKVDEERYD 83 (133)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 899999999999999998888877655443
No 15
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=51.72 E-value=57 Score=22.64 Aligned_cols=70 Identities=7% Similarity=0.135 Sum_probs=41.2
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045249 82 IPCVQQHNKEYEDAMQELEKEKKRGKMIEEEKKKNKSNGRFWWQEGNIIDDMGIEELEEYLKAMKKLKGKVEMRVNEIMM 161 (211)
Q Consensus 82 ~~~~~~l~~~~~~l~~el~k~kk~~~~l~~~~~~~~~~~~~~~~~G~~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~L~~ 161 (211)
...+..|..++...+.+|...+.++++-+..-.. ..++++--++..-+.-...|+.++..++..+.....
T Consensus 21 ~~~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~----------DPDevNK~tl~~R~~~Vs~lq~KiaeLKrqLAd~va 90 (113)
T 4fi5_A 21 SMTMEELQREINAHEGQLVIARQKVRDAEKQYEK----------DPDELNKRTLTDREGVAVSIQAKIDELKRQLADRIA 90 (113)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457778888888888887776665544422222 122333334555555566666667666666665554
No 16
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=49.78 E-value=34 Score=19.40 Aligned_cols=30 Identities=10% Similarity=0.160 Sum_probs=21.4
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhHHHHHHH
Q 045249 84 CVQQHNKEYEDAMQELEKEKKRGKMIEEEK 113 (211)
Q Consensus 84 ~~~~l~~~~~~l~~el~k~kk~~~~l~~~~ 113 (211)
.+..+......|.+.+.-++.+|..+++..
T Consensus 11 r~k~le~~naeLEervstLq~EN~mLRqvl 40 (42)
T 2oqq_A 11 RVKDLENKNSELEERLSTLQNENQMLRHIL 40 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 455667777777778888888877777554
No 17
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=47.02 E-value=67 Score=22.03 Aligned_cols=67 Identities=13% Similarity=0.237 Sum_probs=38.2
Q ss_pred CccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCccccccCCCCCCCC---HHHHHHHHHHHHHHHHHHHHHHH
Q 045249 81 TIPCVQQHNKEYEDAMQELEKEKKRGKMIEEEKKKNKSNGRFWWQEGNIIDDMG---IEELEEYLKAMKKLKGKVEMRVN 157 (211)
Q Consensus 81 ~~~~~~~l~~~~~~l~~el~k~kk~~~~l~~~~~~~~~~~~~~~~~G~~l~~Ls---~eeL~~L~~~Le~~l~~V~~R~~ 157 (211)
++..++.|..++...+.||...+.+.++-+..-.. +.++++ +..-+.-...|+.++..++..+.
T Consensus 33 tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~-------------DPDevNK~tl~~R~~~Vsalq~KiaeLKrqLA 99 (107)
T 2k48_A 33 TMSTLQELQENITAHEQQLVTARQKLKDAEKAVEV-------------DPDDVNKSTLQNRRAAVSTLETKLGELKRQLA 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777776666555443322222 555554 45555555566666666666555
Q ss_pred HHH
Q 045249 158 EIM 160 (211)
Q Consensus 158 ~L~ 160 (211)
...
T Consensus 100 d~v 102 (107)
T 2k48_A 100 DLV 102 (107)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 18
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=46.99 E-value=48 Score=25.55 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=14.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHH
Q 045249 85 VQQHNKEYEDAMQELEKEKKRGKMIE 110 (211)
Q Consensus 85 ~~~l~~~~~~l~~el~k~kk~~~~l~ 110 (211)
...|+.+++.+++++..++..|++++
T Consensus 117 N~~Lh~~ie~l~eEi~~LkeEn~eLk 142 (209)
T 2wvr_A 117 NEKLHKEIEQKDNEIARLKKENKELA 142 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666666555554
No 19
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=44.96 E-value=43 Score=20.12 Aligned_cols=28 Identities=25% Similarity=0.337 Sum_probs=14.6
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHhHHHH
Q 045249 83 PCVQQHNKEYEDAMQELEKEKKRGKMIE 110 (211)
Q Consensus 83 ~~~~~l~~~~~~l~~el~k~kk~~~~l~ 110 (211)
+++.+|.++..+|+.-++.+++-.+.++
T Consensus 17 DqV~eL~qe~k~m~k~lEeEqkARk~LE 44 (56)
T 2w6b_A 17 DEVQELRQDNKKMKKSLEEEQRARKDLE 44 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555544444444
No 20
>3mwp_A Nucleoprotein; structural genomics, scottish structural PROT facility, SSPF, nuclear protein; 1.79A {Lassa virus josiah} PDB: 3mwt_A 3mx2_A* 3mx5_A* 3r3l_A 3t5q_A 3t5n_A
Probab=44.15 E-value=18 Score=31.46 Aligned_cols=55 Identities=13% Similarity=0.179 Sum_probs=37.5
Q ss_pred HHHHHHHHHhHHHHHHHHhcccCCccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 045249 97 QELEKEKKRGKMIEEEKKKNKSNGRFWWQEGNIIDDMGIEELEEYLKAMKKLKGKVEMR 155 (211)
Q Consensus 97 ~el~k~kk~~~~l~~~~~~~~~~~~~~~~~G~~l~~Ls~eeL~~L~~~Le~~l~~V~~R 155 (211)
..|.+++.-|+++..+...-..+...-. .+.+|+-+||.+|..-||++.+.|...
T Consensus 70 ~DL~kLRDLNkeVd~Lm~mkS~Q~~~vL----kvG~LskdeLm~LasDLeKLK~KV~rt 124 (577)
T 3mwp_A 70 NDLKRLRDLNQAVNNLVELKSTQQKSIL----RVGTLTSDDLLILAADLEKLKSKVIRT 124 (577)
T ss_dssp HHHHHHHHHHHHHHHHCSCBCCCCCEEE----CSSSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcccceE----EecCcCHHHHHHHHHHHHHHHHHHhcc
Confidence 4566666666666655543111222222 789999999999999999999988543
No 21
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=43.97 E-value=9.8 Score=24.83 Aligned_cols=56 Identities=14% Similarity=0.220 Sum_probs=36.2
Q ss_pred HHHHHHHhhhhccceEEEEeCCCCcccccCCCchhhHHHHhhhcCCCCcccccCccchhhhhHHHHHHHHHHHH
Q 045249 28 FSKAMELCVLCGAEVGIIVFSPNGKIFLAGHPDFDKILNRYLDQNHSSLDEVNTIPCVQQHNKEYEDAMQELEK 101 (211)
Q Consensus 28 ~KKa~ELs~LC~veva~ivfsp~gk~~~f~~psv~~Vl~ry~~~~~~~~~~~~~~~~~~~l~~~~~~l~~el~k 101 (211)
.|+|+|.+.+++=+.|++.|. ++..-|+||.....+ ...-..|++-..++.+|.+.
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~-----------g~~~qI~k~l~~~~d-------~~~r~kW~~~~~ei~~E~~~ 71 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQ-----------GVLDQMNKYLYSVKD-------THLRQKWQQVWQEINVEAKQ 71 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHH-----------HHHHHHHHHHHTCSC-------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHH-----------HHHHHHHHHHHhcCC-------HHHHHhHHHHHHHHHHHHHH
Confidence 689999999999888877764 355678898774411 23334455555544444443
No 22
>1j1d_B Troponin T, TNT; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.1 PDB: 1j1e_B
Probab=43.90 E-value=34 Score=23.61 Aligned_cols=31 Identities=19% Similarity=0.229 Sum_probs=25.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045249 129 IIDDMGIEELEEYLKAMKKLKGKVEMRVNEI 159 (211)
Q Consensus 129 ~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~L 159 (211)
++++|+.++|+++-..|.+.+..+.+-+-.|
T Consensus 38 ~id~l~~~~L~e~~keLh~~I~~LEeEKYDl 68 (106)
T 1j1d_B 38 AIDHLNEDQLREKAKELWQTIYNLEAEKFDL 68 (106)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 8899999999999999988888876554433
No 23
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=43.58 E-value=1e+02 Score=23.25 Aligned_cols=27 Identities=19% Similarity=0.378 Sum_probs=22.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 045249 129 IIDDMGIEELEEYLKAMKKLKGKVEMR 155 (211)
Q Consensus 129 ~l~~Ls~eeL~~L~~~Le~~l~~V~~R 155 (211)
+|++|+.++|+++-..|.+.+..+.+-
T Consensus 54 nid~Lse~~L~e~ckELh~~I~~LEeE 80 (180)
T 1j1e_C 54 ELAGLGFAELQDLARQLHARVDKVDEE 80 (180)
T ss_dssp CGGGCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999888877766444
No 24
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=42.45 E-value=62 Score=28.73 Aligned_cols=24 Identities=4% Similarity=0.087 Sum_probs=12.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHH
Q 045249 87 QHNKEYEDAMQELEKEKKRGKMIE 110 (211)
Q Consensus 87 ~l~~~~~~l~~el~k~kk~~~~l~ 110 (211)
.|+++|..|+.++......++.|+
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQ 137 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQ 137 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555554443333333
No 25
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=42.31 E-value=81 Score=21.68 Aligned_cols=31 Identities=13% Similarity=0.132 Sum_probs=25.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 045249 128 NIIDDMGIEELEEYLKAMKKLKGKVEMRVNE 158 (211)
Q Consensus 128 ~~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~ 158 (211)
-++++|+.++|+++-..|.+.+..+.+-+-.
T Consensus 37 L~id~l~~~~L~e~~keLh~~I~~lEeEKYD 67 (107)
T 1ytz_T 37 LNIDHLNEDKLRDKAKELWDWLYQLQTEKYD 67 (107)
T ss_dssp CCCSSSCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3889999999999999998888877654443
No 26
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=41.79 E-value=1.2e+02 Score=23.55 Aligned_cols=25 Identities=12% Similarity=0.288 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHc
Q 045249 138 LEEYLKAMKKLKGKVEMRVNEIMMN 162 (211)
Q Consensus 138 L~~L~~~Le~~l~~V~~R~~~L~~~ 162 (211)
+..|...|.++...||+-..+|+.+
T Consensus 177 ~~KF~~lLNeKK~KIR~lq~~Ll~~ 201 (213)
T 1ik9_A 177 YKRFILVLNEKKTKIRSLHNKLLNA 201 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 5578889999999999988777753
No 27
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=41.19 E-value=38 Score=22.26 Aligned_cols=28 Identities=29% Similarity=0.328 Sum_probs=18.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHHHH
Q 045249 85 VQQHNKEYEDAMQELEKEKKRGKMIEEE 112 (211)
Q Consensus 85 ~~~l~~~~~~l~~el~k~kk~~~~l~~~ 112 (211)
...|+.+++.+++++..++..+++++.+
T Consensus 48 N~~Lh~~ie~l~eEi~~lk~en~eL~el 75 (83)
T 1uii_A 48 NEKLHKEIEQKDNEIARLKKENKELAEV 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456677777777777777776666544
No 28
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=40.73 E-value=44 Score=23.56 Aligned_cols=65 Identities=9% Similarity=0.148 Sum_probs=36.4
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 045249 83 PCVQQHNKEYEDAMQELEKEKKRGKMIEEEKKKNKSNGRFWWQEGNIIDDMGIEELEEYLKAMKKLKGKVEMRVNE 158 (211)
Q Consensus 83 ~~~~~l~~~~~~l~~el~k~kk~~~~l~~~~~~~~~~~~~~~~~G~~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~ 158 (211)
..+..++..+..|..+++.++..+..++...... ...+ .+.+.+++.....|+.-+..++..+..
T Consensus 36 ~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~----e~~~-------~~~l~~~q~~i~~lE~eL~~~r~e~~~ 100 (129)
T 3tnu_B 36 HEISEMNRMIQRLRAEIDNVKKQCANLQNAIADA----EQRG-------ELALKDARNKLAELEEALQKAKQDMAR 100 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH----HHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4566777788888888888877776665333220 0011 123455555555555555555555443
No 29
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=40.31 E-value=41 Score=18.52 Aligned_cols=30 Identities=13% Similarity=0.268 Sum_probs=22.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 045249 133 MGIEELEEYLKAMKKLKGKVEMRVNEIMMN 162 (211)
Q Consensus 133 Ls~eeL~~L~~~Le~~l~~V~~R~~~L~~~ 162 (211)
++++|.++-...|+..+..+++-+.+|..|
T Consensus 8 mTLeEtkeQi~~l~~kl~~LkeEKHQLFlQ 37 (38)
T 2l5g_A 8 MSLEETKEQILKLEEKLLALQEEKHQLFLQ 37 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 467777777778888888888888887653
No 30
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=39.18 E-value=46 Score=23.56 Aligned_cols=65 Identities=8% Similarity=0.198 Sum_probs=35.0
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 045249 83 PCVQQHNKEYEDAMQELEKEKKRGKMIEEEKKKNKSNGRFWWQEGNIIDDMGIEELEEYLKAMKKLKGKVEMRVNE 158 (211)
Q Consensus 83 ~~~~~l~~~~~~l~~el~k~kk~~~~l~~~~~~~~~~~~~~~~~G~~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~ 158 (211)
..+..++..+..|..+++.++..+..++...... ...+ .+-+++++.....|+.-+..++..+..
T Consensus 38 ~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~----e~~~-------~~~l~~~q~~i~~lE~eL~~~r~em~~ 102 (131)
T 3tnu_A 38 SEISELRRTMQNLEIELQSQLSMKASLENSLEET----KGRY-------CMQLAQIQEMIGSVEEQLAQLRCEMEQ 102 (131)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH----HHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888888877766665333220 0001 122445555555555555555555443
No 31
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=38.50 E-value=87 Score=20.92 Aligned_cols=65 Identities=6% Similarity=0.040 Sum_probs=44.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045249 85 VQQHNKEYEDAMQELEKEKKRGKMIEEEKKKNKSNGRFWWQEGNIIDDMGIEELEEYLKAMKKLKGKVEMRVNEIM 160 (211)
Q Consensus 85 ~~~l~~~~~~l~~el~k~kk~~~~l~~~~~~~~~~~~~~~~~G~~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~L~ 160 (211)
.++..+-+.+.+.++...+...++++...... . .-..+|+.+|......+.+..-.+..|+.++.
T Consensus 7 ~~yF~~lv~~fe~rL~~Yr~~IeelE~~L~s~---------s--~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH 71 (93)
T 3t98_B 7 ADYFRVLVQQFEVQLQQYRQQIEELENHLATQ---------A--NNSHITPQDLSMAMQKIYQTFVALAAQLQSIH 71 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCH---------H--HHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---------c--CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667777777777777777777554331 1 22567888888888877777777777776665
No 32
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=38.33 E-value=73 Score=20.45 Aligned_cols=31 Identities=19% Similarity=0.223 Sum_probs=19.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045249 129 IIDDMGIEELEEYLKAMKKLKGKVEMRVNEI 159 (211)
Q Consensus 129 ~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~L 159 (211)
....+|-+||.++.-.++..+..-+.|+.+|
T Consensus 10 ~y~~ltreELi~l~lk~~~~l~~k~~~v~eL 40 (75)
T 3tso_C 10 GYRSLTYEEVLQELVKHKELLRRKDTHIREL 40 (75)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888777776666665555555444
No 33
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=37.50 E-value=85 Score=20.49 Aligned_cols=54 Identities=17% Similarity=0.150 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCccccccCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 045249 88 HNKEYEDAMQELEKEKKRGKMIEEEKKKNKSNGRFWWQEGNIIDDMGIEELEEYLKAMKKLKGKVE 153 (211)
Q Consensus 88 l~~~~~~l~~el~k~kk~~~~l~~~~~~~~~~~~~~~~~G~~l~~Ls~eeL~~L~~~Le~~l~~V~ 153 (211)
.+++++.|..+++++..+...|...+.. . ++..-+.+.+..+...++.+...+.
T Consensus 20 eqrEle~le~~Ie~LE~~i~~le~~lad----------p--~~y~~d~~~~~~l~~~l~~~e~eLe 73 (89)
T 2lw1_A 20 LQRELEQLPQLLEDLEAKLEALQTQVAD----------A--SFFSQPHEQTQKVLADMAAAEQELE 73 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS----------T--TGGGSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC----------c--ccccCCHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888887777755432 1 3322346666666666555544443
No 34
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=37.31 E-value=1e+02 Score=21.32 Aligned_cols=54 Identities=22% Similarity=0.310 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHhcccCCccccccCCCCCCCCHHHHHHHHHHHHHHHHHH
Q 045249 92 YEDAMQELEKEKKRGKMIEEEKKKNKSNGRFWWQEGNIIDDMGIEELEEYLKAMKKLKGKV 152 (211)
Q Consensus 92 ~~~l~~el~k~kk~~~~l~~~~~~~~~~~~~~~~~G~~l~~Ls~eeL~~L~~~Le~~l~~V 152 (211)
+++|.++|.+++-+|..|++..+. + +.+ +-+-.-|+..|=+.+..+.-..+...
T Consensus 10 ~EeLaaeL~kLqmENK~LKkkl~~--~-g~~----~p~d~~LTp~qKea~I~s~~~~Lss~ 63 (110)
T 2oa5_A 10 YEEMVKEVERLKLENKTLKQKVKS--S-GAV----SSDDSILTAAKRESIIVSSSRALGAV 63 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTC----------------CCBCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--C-CCC----CCCCccCCHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666533322 1 111 22567799999998888777776654
No 35
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=37.26 E-value=65 Score=19.06 Aligned_cols=27 Identities=11% Similarity=0.188 Sum_probs=17.8
Q ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 045249 89 NKEYEDAMQELEKEKKRGKMIEEEKKK 115 (211)
Q Consensus 89 ~~~~~~l~~el~k~kk~~~~l~~~~~~ 115 (211)
..++..++.++..+.++|+.|....+.
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~ 34 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKE 34 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556777777777888777755544
No 36
>2hv8_D RAB11 family-interacting protein 3; protein transport, RAB11A, FIP3, cytokinesis, recycling endosomes; HET: GTP MES; 1.86A {Homo sapiens} SCOP: h.1.31.1
Probab=36.81 E-value=76 Score=19.74 Aligned_cols=33 Identities=15% Similarity=0.310 Sum_probs=27.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045249 129 IIDDMGIEELEEYLKAMKKLKGKVEMRVNEIMM 161 (211)
Q Consensus 129 ~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~L~~ 161 (211)
.++++|-+||.+....-++....++.-++.|+.
T Consensus 19 e~~~~s~deL~~~l~eqee~n~~Le~YID~LL~ 51 (64)
T 2hv8_D 19 EISSVSRDELMEAIQKQEEINFRLQDYIDRIIV 51 (64)
T ss_dssp TCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999998888877777778888887775
No 37
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=36.32 E-value=1e+02 Score=21.50 Aligned_cols=34 Identities=18% Similarity=0.127 Sum_probs=29.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q 045249 130 IDDMGIEELEEYLKAMKKLKGKVEMRVNEIMMNG 163 (211)
Q Consensus 130 l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~L~~~~ 163 (211)
-.+=.-+..++|...+...|..|+.|+..|....
T Consensus 65 ~~g~~we~Ar~lq~KM~~nL~~v~~RL~~Le~~~ 98 (116)
T 2dl1_A 65 HTGPGWESARQMQQKMKETLQNVRTRLEILEKGL 98 (116)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4456788999999999999999999999886544
No 38
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=35.96 E-value=95 Score=20.93 Aligned_cols=12 Identities=17% Similarity=0.423 Sum_probs=7.8
Q ss_pred CchhhHHHHhhh
Q 045249 59 PDFDKILNRYLD 70 (211)
Q Consensus 59 psv~~Vl~ry~~ 70 (211)
|.++..+.+|..
T Consensus 6 ~e~Q~~i~~~~~ 17 (117)
T 2zqm_A 6 PQVQAMLGQLES 17 (117)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 456677777755
No 39
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=35.94 E-value=1.3e+02 Score=23.81 Aligned_cols=30 Identities=13% Similarity=0.203 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Q 045249 135 IEELEEYLKAMKKLKGKVEMRVNEIMMNGY 164 (211)
Q Consensus 135 ~eeL~~L~~~Le~~l~~V~~R~~~L~~~~~ 164 (211)
+.-|.+-+..|+.-|..|..|++.+...++
T Consensus 200 LA~lEqdEl~LE~eL~~V~~Rief~qEy~l 229 (242)
T 3uux_B 200 IANIEQNQLLLEDNLKQIDDRLDFLEEYGL 229 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCC-
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhch
Confidence 667778888999999999999999866554
No 40
>1m2d_A [2Fe-2S] ferredoxin; thioredoxin-like fold, [2Fe-2S] cluster, Cys59Ser variant, electron transport; 1.05A {Aquifex aeolicus} SCOP: c.47.1.11 PDB: 1m2a_A 1f37_A 1m2b_A
Probab=35.13 E-value=21 Score=24.36 Aligned_cols=32 Identities=25% Similarity=0.474 Sum_probs=21.8
Q ss_pred hccceEEEEeCCCCcccccCCC-chhhHHHHhhh
Q 045249 38 CGAEVGIIVFSPNGKIFLAGHP-DFDKILNRYLD 70 (211)
Q Consensus 38 C~veva~ivfsp~gk~~~f~~p-sv~~Vl~ry~~ 70 (211)
|+-.-.|+|+ |+|..|.-.+| .+.+||+.+..
T Consensus 59 C~~gP~v~V~-P~~~~y~~vt~e~v~~il~~~l~ 91 (110)
T 1m2d_A 59 SMMGPVVVVY-PDGVWYGQVKPEDVDEIVEKHLK 91 (110)
T ss_dssp GGGCSCEEEE-TTTEEECSCCGGGHHHHHHHTTT
T ss_pred cCCCCEEEEE-eCCEEEecCCHHHHHHHHHHHHH
Confidence 4444445666 88877666666 58999999754
No 41
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=33.76 E-value=75 Score=26.98 Aligned_cols=20 Identities=10% Similarity=0.074 Sum_probs=11.2
Q ss_pred hhhHHHHHHHHHHHHHHHHh
Q 045249 87 QHNKEYEDAMQELEKEKKRG 106 (211)
Q Consensus 87 ~l~~~~~~l~~el~k~kk~~ 106 (211)
.+..+|++|+++|+.+++-.
T Consensus 64 ~~~~rIe~L~~~L~~~s~s~ 83 (390)
T 1deq_A 64 DFTSRINKLRDSLFNYQKNS 83 (390)
T ss_pred hHHHHHHHHHHHHHHHHHhh
Confidence 45556666666666554443
No 42
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=33.71 E-value=1e+02 Score=20.27 Aligned_cols=11 Identities=27% Similarity=0.290 Sum_probs=8.1
Q ss_pred CCCCHHHHHHH
Q 045249 131 DDMGIEELEEY 141 (211)
Q Consensus 131 ~~Ls~eeL~~L 141 (211)
+++|++||...
T Consensus 71 ~GI~~eeL~~~ 81 (86)
T 3nr7_A 71 DGIDPNELLNS 81 (86)
T ss_dssp TCCCHHHHHHH
T ss_pred cCCCHHHHHhh
Confidence 67888888654
No 43
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=32.50 E-value=1.7e+02 Score=25.57 Aligned_cols=71 Identities=14% Similarity=0.160 Sum_probs=31.2
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCccccccCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045249 84 CVQQHNKEYEDAMQELEKEKKRGKMIEEEKKKNKSNGRFWWQEGNIIDDM--GIEELEEYLKAMKKLKGKVEMRVNEIMM 161 (211)
Q Consensus 84 ~~~~l~~~~~~l~~el~k~kk~~~~l~~~~~~~~~~~~~~~~~G~~l~~L--s~eeL~~L~~~Le~~l~~V~~R~~~L~~ 161 (211)
.+-.+..+.-.++.+++.++.+...+.+.....+. .|++.+.| -+.+|.+-...|++.+..+.+.+..++.
T Consensus 34 ~~~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~-------~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~ 106 (485)
T 3qne_A 34 EIIAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFK-------AKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKIN 106 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------TTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-------CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555666666665554444322211001 13333222 1233334444455555555666655543
No 44
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=32.01 E-value=51 Score=21.63 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=18.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHHHH
Q 045249 85 VQQHNKEYEDAMQELEKEKKRGKMIEEE 112 (211)
Q Consensus 85 ~~~l~~~~~~l~~el~k~kk~~~~l~~~ 112 (211)
...|+.+++.+++++..++..|++++.+
T Consensus 40 N~~Lh~~ie~~~eEi~~Lk~en~~L~el 67 (83)
T 1wlq_A 40 NEKLHKEIEQKDSEIARLRKENKDLAEV 67 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777777777777776666533
No 45
>1txp_A HnRNP C, heterogeneous nuclear ribonucleoprotein C protein; antiparallel four helix coiled coil tetramer HNRNPC, signaling protein; NMR {Homo sapiens}
Probab=31.50 E-value=57 Score=16.68 Aligned_cols=18 Identities=22% Similarity=0.338 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 045249 136 EELEEYLKAMKKLKGKVE 153 (211)
Q Consensus 136 eeL~~L~~~Le~~l~~V~ 153 (211)
.||.++...++.+|.++.
T Consensus 6 kELtQIK~kvDsLLe~Le 23 (28)
T 1txp_A 6 KELTQIKQKVDSLLENLE 23 (28)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466677777777666553
No 46
>2zvv_Y Cyclin-dependent kinase inhibitor 1; protein-peptide complex, DNA replication, DNA-binding, nucleus, DNA binding protein; 2.00A {Arabidopsis thaliana} PDB: 1axc_B 2zvw_I
Probab=30.81 E-value=5.2 Score=19.96 Aligned_cols=12 Identities=17% Similarity=0.279 Sum_probs=8.2
Q ss_pred ccchhhhhhhhh
Q 045249 14 NSLQVTFSKRRS 25 (211)
Q Consensus 14 ~~R~vTF~KRr~ 25 (211)
+.|++-|.||++
T Consensus 15 sKRRlvf~~rkp 26 (26)
T 2zvv_Y 15 SKRRLIFSXXXX 26 (26)
T ss_pred hhceEEEEeccC
Confidence 467777777763
No 47
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=30.50 E-value=1.3e+02 Score=20.51 Aligned_cols=68 Identities=19% Similarity=0.214 Sum_probs=38.4
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 045249 87 QHNKEYEDAMQELEKEKKRGKMIEEEKKKNKSNGRFWWQEGNIIDDMGIEELEEYLKAMKKLKGKVEMRVNEIMMN 162 (211)
Q Consensus 87 ~l~~~~~~l~~el~k~kk~~~~l~~~~~~~~~~~~~~~~~G~~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~L~~~ 162 (211)
.+-.+++.++..+..++...++|..+...... .. .-+.-.-++|..+...+...-..|+.++..|-.+
T Consensus 9 ~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~------~~--~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~ 76 (127)
T 1ez3_A 9 EFFEQVEEIRGFIDKIAENVEEVKRKHSAILA------SP--NPDEKTKEELEELMSDIKKTANKVRSKLKSIEQS 76 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------CS--SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cC--CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666666665555544433101 01 1111124577777777777778888888877543
No 48
>1sse_A AP-1 like transcription factor YAP1; disulfide bond, nuclear export signal, NES, redox- regulation, transcription activator; NMR {Saccharomyces cerevisiae} SCOP: g.78.1.1
Probab=29.98 E-value=25 Score=18.97 Aligned_cols=14 Identities=29% Similarity=0.655 Sum_probs=8.3
Q ss_pred CCcCCCCCCCCCCC
Q 045249 198 GGVDFDFGFDEHFN 211 (211)
Q Consensus 198 ~~~~~~~g~~~~~~ 211 (211)
++++-+|+|..||.
T Consensus 5 ~~~S~~~nF~~~FD 18 (35)
T 1sse_A 5 NMFSNDFNFENQFD 18 (35)
T ss_dssp SSCCCCGGGSSSCC
T ss_pred cccccccChhhhHH
Confidence 45556666666663
No 49
>3sl9_C B-cell CLL/lymphoma 9 protein; armadillo repeat, components of the WNT signaling pathway, B catenin, signaling protein, protein binding; 2.20A {Homo sapiens} PDB: 2gl7_C
Probab=29.86 E-value=86 Score=18.23 Aligned_cols=24 Identities=25% Similarity=0.444 Sum_probs=18.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHH
Q 045249 127 GNIIDDMGIEELEEYLKAMKKLKG 150 (211)
Q Consensus 127 G~~l~~Ls~eeL~~L~~~Le~~l~ 150 (211)
|++-++||-++|..-+..|..+..
T Consensus 4 ~~n~~gls~eqlehrerslqtlrd 27 (55)
T 3sl9_C 4 GENPDGLSQEQLEHRERSLQTLRD 27 (55)
T ss_dssp ---CCCCCHHHHHHHHHHHHHHHH
T ss_pred ccCCcccCHHHHHHHHHHHHHHHH
Confidence 678899999999999988887654
No 50
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=29.78 E-value=32 Score=30.52 Aligned_cols=20 Identities=10% Similarity=0.094 Sum_probs=11.2
Q ss_pred hhhHHHHHHHHHHHHHHHHh
Q 045249 87 QHNKEYEDAMQELEKEKKRG 106 (211)
Q Consensus 87 ~l~~~~~~l~~el~k~kk~~ 106 (211)
.+.+.|++|+++++.+++..
T Consensus 61 DltkrINELKnqLEdlsKns 80 (562)
T 3ghg_A 61 DFTNRINKLKNSLFEYQKNN 80 (562)
T ss_dssp HHHHHHHHHHHHHTHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhc
Confidence 45556666666666554433
No 51
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=29.68 E-value=27 Score=19.62 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=18.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHH
Q 045249 129 IIDDMGIEELEEYLKAMKKLK 149 (211)
Q Consensus 129 ~l~~Ls~eeL~~L~~~Le~~l 149 (211)
.+.+|++-|+.+|...|++..
T Consensus 9 ~i~~lTvlE~~eLvk~leekf 29 (40)
T 1dd4_C 9 AIEKLTVSELAELVKKLEDKF 29 (40)
T ss_dssp HHTTSCHHHHHHHHHHHHHHT
T ss_pred HHHhCcHHHHHHHHHHHHHHH
Confidence 678899999999999998753
No 52
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=28.69 E-value=65 Score=20.95 Aligned_cols=28 Identities=25% Similarity=0.304 Sum_probs=18.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhHHHHHH
Q 045249 85 VQQHNKEYEDAMQELEKEKKRGKMIEEE 112 (211)
Q Consensus 85 ~~~l~~~~~~l~~el~k~kk~~~~l~~~ 112 (211)
...|+.+++.+++++..++..|+.+..+
T Consensus 36 N~~Lh~~ie~~~eEi~~LkeEN~~L~el 63 (79)
T 2zxx_A 36 NEKLHKEIEQKDSEIARLRKENKDLAEV 63 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467777777777777777776655533
No 53
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=27.76 E-value=1.9e+02 Score=24.97 Aligned_cols=72 Identities=11% Similarity=0.284 Sum_probs=32.9
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCccccccCCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045249 83 PCVQQHNKEYEDAMQELEKEKKRGKMIEEEKKKNKSNGRFWWQEGNIIDDM--GIEELEEYLKAMKKLKGKVEMRVNEIM 160 (211)
Q Consensus 83 ~~~~~l~~~~~~l~~el~k~kk~~~~l~~~~~~~~~~~~~~~~~G~~l~~L--s~eeL~~L~~~Le~~l~~V~~R~~~L~ 160 (211)
+.+-.+..+...++.+++.++.+...+.+.....+. .|++.+.| .+.+|.+-...|++.+..+.+.+..++
T Consensus 31 ~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~-------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (455)
T 2dq0_A 31 DEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRK-------KGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYL 103 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-------SCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-------ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555556666666665555444422221001 13332222 133334444455555555666665555
Q ss_pred H
Q 045249 161 M 161 (211)
Q Consensus 161 ~ 161 (211)
.
T Consensus 104 ~ 104 (455)
T 2dq0_A 104 W 104 (455)
T ss_dssp T
T ss_pred H
Confidence 4
No 54
>2ky6_A Mediator of RNA polymerase II transcription subun; ARC, VP16 binding domain, acid, transcription REGU; NMR {Homo sapiens} PDB: 2l23_A 2l6u_A 2xnf_A
Probab=26.86 E-value=33 Score=25.56 Aligned_cols=36 Identities=17% Similarity=0.295 Sum_probs=24.7
Q ss_pred hhhhccceEEEEeCCCCccc-cc-CCC------chhhHHHHhhh
Q 045249 35 CVLCGAEVGIIVFSPNGKIF-LA-GHP------DFDKILNRYLD 70 (211)
Q Consensus 35 s~LC~veva~ivfsp~gk~~-~f-~~p------sv~~Vl~ry~~ 70 (211)
+.-|.+.|-+++|||..+.| -| ++. .++.||..++.
T Consensus 116 ~~~ceiKvLiLlYs~~k~aflGfIPnDQ~~Fv~rlr~Viq~~k~ 159 (166)
T 2ky6_A 116 TAPCEVRVLMLLYSSKKKIFMGLIPYDQSGFVNGIRQVITNHKQ 159 (166)
T ss_dssp TCCCSCCEEEEEECTTTCSEEEEEESSHHHHHHHHHHHHHHHHT
T ss_pred CCCcceEEEEEEEcCCcceeeeeccCCHHHHHHHHHHHHHHHHH
Confidence 34599999999999998865 33 333 24566666654
No 55
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=26.29 E-value=1e+02 Score=19.65 Aligned_cols=31 Identities=13% Similarity=0.325 Sum_probs=22.7
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHhHHHHHHH
Q 045249 83 PCVQQHNKEYEDAMQELEKEKKRGKMIEEEK 113 (211)
Q Consensus 83 ~~~~~l~~~~~~l~~el~k~kk~~~~l~~~~ 113 (211)
..+..|..+...++.+++.++.++..++...
T Consensus 47 ~YI~~L~~~~~~l~~e~~~L~~~~~~L~~~l 77 (83)
T 1nkp_B 47 EYIQYMRRKNHTHQQDIDDLKRQNALLEQQV 77 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466778888888888888888877776433
No 56
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=26.19 E-value=84 Score=16.94 Aligned_cols=24 Identities=13% Similarity=0.371 Sum_probs=16.4
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHH
Q 045249 87 QHNKEYEDAMQELEKEKKRGKMIE 110 (211)
Q Consensus 87 ~l~~~~~~l~~el~k~kk~~~~l~ 110 (211)
++.......+++++.++++|..|+
T Consensus 4 ~mRrKn~a~qqDIddlkrQN~~Le 27 (34)
T 1a93_B 4 GMRRKNDTHQQDIDDLKRQNALLE 27 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhhhHhhHhhHHHHHHHHHHHH
Confidence 445566666777777777777666
No 57
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=26.16 E-value=91 Score=17.36 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=15.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q 045249 131 DDMGIEELEEYLKAMKKLKGKVEM 154 (211)
Q Consensus 131 ~~Ls~eeL~~L~~~Le~~l~~V~~ 154 (211)
++.+.+||-.|+..|..+-+.+..
T Consensus 15 egfspeelaaleselqalekklaa 38 (48)
T 1g6u_A 15 EGFSPEELAALESELQALEKKLAA 38 (48)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHH
Confidence 346788888888766555444433
No 58
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=26.14 E-value=1.3e+02 Score=20.14 Aligned_cols=29 Identities=24% Similarity=0.438 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045249 133 MGIEELEEYLKAMKKLKGKVEMRVNEIMM 161 (211)
Q Consensus 133 Ls~eeL~~L~~~Le~~l~~V~~R~~~L~~ 161 (211)
.+++||+.|...|+.-...+++....|..
T Consensus 6 ~dpeElr~Fa~~L~~F~d~Lq~~~~~L~~ 34 (94)
T 3fx7_A 6 MDTEEVREFVGHLERFKELLREEVNSLSN 34 (94)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57899999999999999999988888764
No 59
>4dzo_A Mitotic spindle assembly checkpoint protein MAD1; homodimer, kinetochore, mitosis, spindle checkpoint protein, nucleus, cell cycle; HET: MSE; 1.76A {Homo sapiens}
Probab=24.77 E-value=79 Score=22.24 Aligned_cols=21 Identities=14% Similarity=0.327 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHH
Q 045249 90 KEYEDAMQELEKEKKRGKMIE 110 (211)
Q Consensus 90 ~~~~~l~~el~k~kk~~~~l~ 110 (211)
+++..|+++++..++++..++
T Consensus 4 ~e~~~l~~qi~~~ekr~~RLK 24 (123)
T 4dzo_A 4 KEVAELKKQVESAELKNQRLK 24 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567778888877777665444
No 60
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=24.72 E-value=1.2e+02 Score=20.48 Aligned_cols=31 Identities=6% Similarity=0.161 Sum_probs=26.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045249 129 IIDDMGIEELEEYLKAMKKLKGKVEMRVNEI 159 (211)
Q Consensus 129 ~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~L 159 (211)
-++.++.+|+..|...|......+...+++.
T Consensus 111 ~~~~l~~~e~~~l~~~l~~l~~~l~~~~~~~ 141 (144)
T 1lj9_A 111 ALQGLSEVEISQLADYLVRMRKNVSEDWEFV 141 (144)
T ss_dssp HTTTCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHhHHHHHHhc
Confidence 5577999999999999999999888776653
No 61
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=24.68 E-value=1.6e+02 Score=19.75 Aligned_cols=72 Identities=8% Similarity=0.155 Sum_probs=42.8
Q ss_pred ccchhhhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045249 82 IPCVQQHNKEYEDAMQELEKEKKRGKMIEEEKKKNKSNGRFWWQEGNIIDDMGIEELEEYLKAMKKLKGKVEMRVNEIMM 161 (211)
Q Consensus 82 ~~~~~~l~~~~~~l~~el~k~kk~~~~l~~~~~~~~~~~~~~~~~G~~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~L~~ 161 (211)
+..+..|..++.....+|...+.+++.-+..... ..++++--++..-+.-...|+.++..+...+.....
T Consensus 4 M~~i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~----------DPDevNk~~~~~R~~~V~~lq~Ki~elkr~lAd~v~ 73 (96)
T 2ic9_A 4 MSTLKEVQDNITLHEQRLVTTRQKLKDAERAVEL----------DPDDVNKSTLQSRRAAVSALETKLGELKRELADLIA 73 (96)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567778888888888887766665444322222 122333334555556666677777777776666655
Q ss_pred cC
Q 045249 162 NG 163 (211)
Q Consensus 162 ~~ 163 (211)
.+
T Consensus 74 ~~ 75 (96)
T 2ic9_A 74 AQ 75 (96)
T ss_dssp HH
T ss_pred cc
Confidence 43
No 62
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=24.25 E-value=1.2e+02 Score=17.90 Aligned_cols=29 Identities=34% Similarity=0.288 Sum_probs=20.4
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhHHHHHH
Q 045249 84 CVQQHNKEYEDAMQELEKEKKRGKMIEEE 112 (211)
Q Consensus 84 ~~~~l~~~~~~l~~el~k~kk~~~~l~~~ 112 (211)
.+..|.+.+..|..++...+.+...+...
T Consensus 13 sV~KLek~ID~LEdeL~~eKek~~~i~~e 41 (52)
T 2z5i_A 13 EVARLKKLVDDLEDELYAQKLKYKAISEE 41 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 46677788888888887777776666533
No 63
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=23.87 E-value=1.9 Score=29.87 Aligned_cols=41 Identities=22% Similarity=0.270 Sum_probs=28.3
Q ss_pred CCCccchhhhhhhhhhHHHHHHHHhhhhccceEEEEeCCCCccccc
Q 045249 11 EDKNSLQVTFSKRRSGLFSKAMELCVLCGAEVGIIVFSPNGKIFLA 56 (211)
Q Consensus 11 ~n~~~R~vTF~KRr~GL~KKa~ELs~LC~veva~ivfsp~gk~~~f 56 (211)
.++.....||.=.-.-|.++.-+|+.+| ++.|+|.|+-|..
T Consensus 22 ~~k~~ytktFdV~vaNl~~~~idLsk~C-----~~a~~~~gkef~l 62 (106)
T 3nrf_A 22 GDKHFRTQAFKVRLVNAAKSEISLKNSC-----LVAQSAAGQSFRL 62 (106)
T ss_dssp TTEEEEEEEEEEEEECCSSSCEECTTCE-----EEEEETTSCEEEE
T ss_pred CCeeEEEEEEEEEEecCCCCccccchhh-----heeeCcCCCEEEe
Confidence 3344445566666667777777888765 9999999976544
No 64
>2phn_A F420-0:gamma-glutamyl ligase; coenzyme F420 biosynthesis, amide BON enzyme, metal dependent, NEW fold, GDP binding, MCSG; HET: GDP; 1.35A {Archaeoglobus fulgidus dsm 4304} SCOP: d.340.1.1 PDB: 2g9i_A
Probab=23.60 E-value=15 Score=29.48 Aligned_cols=28 Identities=32% Similarity=0.567 Sum_probs=22.4
Q ss_pred HHhhhhccceEEEEeCCCCcccccCCCc
Q 045249 33 ELCVLCGAEVGIIVFSPNGKIFLAGHPD 60 (211)
Q Consensus 33 ELs~LC~veva~ivfsp~gk~~~f~~ps 60 (211)
+|.-.||++|+|||+.+.|+++-.+.+.
T Consensus 138 ~l~~~~G~~v~ViI~Dt~gr~~r~g~~~ 165 (254)
T 2phn_A 138 RILELTGKRVGVIITDTNGRCFRRGVVG 165 (254)
T ss_dssp HHHHHHSCCCEEEEEEEEEETTEEEEEE
T ss_pred HHHHHHCCCEEEEEEcCCCchhhccCcc
Confidence 4456789999999999999887776653
No 65
>2k1v_A Insulin-like peptide INSL5; peptide hormone, relaxin-3, chimera, cleavage on PAIR of basic residues, secreted, signaling protein; HET: PCA; NMR {Synthetic} PDB: 2kbc_A*
Probab=23.22 E-value=26 Score=17.66 Aligned_cols=10 Identities=30% Similarity=0.657 Sum_probs=6.9
Q ss_pred HHHHhhhhcc
Q 045249 31 AMELCVLCGA 40 (211)
Q Consensus 31 a~ELs~LC~v 40 (211)
.+|||.||.-
T Consensus 14 msDLs~lC~~ 23 (26)
T 2k1v_A 14 MTDLSALCXX 23 (26)
T ss_dssp HHHHTTTC--
T ss_pred HHHHHHHHhh
Confidence 4799999953
No 66
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=21.80 E-value=2.4e+02 Score=20.68 Aligned_cols=62 Identities=10% Similarity=0.222 Sum_probs=35.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCccccccCCCCCCCC-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 045249 87 QHNKEYEDAMQELEKEKKRGKMIEEEKKKNKSNGRFWWQEGNIIDDMG-------IEELEEYLKAMKKLKGKVEMRVNEI 159 (211)
Q Consensus 87 ~l~~~~~~l~~el~k~kk~~~~l~~~~~~~~~~~~~~~~~G~~l~~Ls-------~eeL~~L~~~Le~~l~~V~~R~~~L 159 (211)
.|...+..+...+.+......+|..+... .+...+ -++|..+...+....+.++.++..|
T Consensus 6 ~f~~~~~~i~~~i~~i~~~v~~L~~l~~~-------------~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l 72 (196)
T 1fio_A 6 GFMNKISQINRDLDKYDHTINQVDSLHKR-------------LLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSA 72 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666677766666666655544 111122 2345555566666666666666666
Q ss_pred HH
Q 045249 160 MM 161 (211)
Q Consensus 160 ~~ 161 (211)
-.
T Consensus 73 ~~ 74 (196)
T 1fio_A 73 QR 74 (196)
T ss_dssp HH
T ss_pred Hh
Confidence 53
No 67
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=20.91 E-value=20 Score=18.81 Aligned_cols=20 Identities=25% Similarity=0.494 Sum_probs=16.0
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q 045249 129 IIDDMGIEELEEYLKAMKKL 148 (211)
Q Consensus 129 ~l~~Ls~eeL~~L~~~Le~~ 148 (211)
.+.+||+-|+.+|...|++.
T Consensus 9 ~i~~lTvlEl~eLvk~lEe~ 28 (30)
T 1zav_U 9 AIEKLTVSELAELVKKLEDK 28 (30)
T ss_dssp HHHHSBHHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHH
Confidence 45668899999999988864
No 68
>3rmq_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, zinc binding, unknown function; 1.85A {Saccharomonospora viridis} PDB: 3rms_A
Probab=20.46 E-value=18 Score=25.24 Aligned_cols=12 Identities=33% Similarity=0.634 Sum_probs=9.5
Q ss_pred HHhhhhccceEE
Q 045249 33 ELCVLCGAEVGI 44 (211)
Q Consensus 33 ELs~LC~veva~ 44 (211)
.+.+|||++|..
T Consensus 31 ~ftaLCG~~VTp 42 (116)
T 3rmq_A 31 PFTALCGETVTP 42 (116)
T ss_dssp CEECTTSCEECC
T ss_pred ccccccCCeecC
Confidence 467999999863
No 69
>4gmn_B 60S ribosomal protein L5-like protein; ARM, heat, solenoid, linear motif, nuclear transport, chaper ribosome assembly, RPL11, KAP104; 2.95A {Chaetomium thermophilum}
Probab=20.39 E-value=28 Score=20.28 Aligned_cols=11 Identities=45% Similarity=0.933 Sum_probs=8.4
Q ss_pred chhhhhhhhhh
Q 045249 16 LQVTFSKRRSG 26 (211)
Q Consensus 16 R~vTF~KRr~G 26 (211)
=||.|.+||.|
T Consensus 16 yQvkfRRRREG 26 (49)
T 4gmn_B 16 FQTKFKRRRQG 26 (49)
T ss_pred HhhHHhhhhcc
Confidence 37788888877
No 70
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=20.31 E-value=2.6e+02 Score=20.41 Aligned_cols=68 Identities=22% Similarity=0.273 Sum_probs=42.0
Q ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCccccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 045249 87 QHNKEYEDAMQELEKEKKRGKMIEEEKKKNKSNGRFWWQEGNIIDDMGIEELEEYLKAMKKLKGKVEMRVNEIMMN 162 (211)
Q Consensus 87 ~l~~~~~~l~~el~k~kk~~~~l~~~~~~~~~~~~~~~~~G~~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~L~~~ 162 (211)
.+-.++..++..+..+.....+|..+....... . .-+.---.+|..+...+...-+.|+.++..|-..
T Consensus 40 ~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~------~--~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~ 107 (180)
T 1s94_A 40 EFFEQVEEIRAMIDKISDNVDAVKKKHSDILSA------P--QTDDQMKEELEELMTDIKRTANKVRGKLKTIELN 107 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC---------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------C--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777776666666555441110 1 1111234788888888888888888888888643
No 71
>3teq_A Stromal interaction molecule 1; signaling protein; 1.90A {Homo sapiens}
Probab=20.20 E-value=2.1e+02 Score=19.39 Aligned_cols=31 Identities=13% Similarity=0.280 Sum_probs=23.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 045249 127 GNIIDDMGIEELEEYLKAMKKLKGKVEMRVNE 158 (211)
Q Consensus 127 G~~l~~Ls~eeL~~L~~~Le~~l~~V~~R~~~ 158 (211)
|..+|+++ ..+.+...+|++.-..+++|...
T Consensus 56 s~slD~vD-~~Il~Ak~aL~evt~~l~Er~~R 86 (101)
T 3teq_A 56 SSSLDDVD-HKILTAKQALSEATAALRERLHR 86 (101)
T ss_dssp CGGGGGTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 55788887 66778888888888888887543
No 72
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=20.15 E-value=2e+02 Score=19.21 Aligned_cols=64 Identities=19% Similarity=0.288 Sum_probs=40.8
Q ss_pred chhhhhHHHHHHHHHHHHHHHHhHHHHHHHHhcccCCccccccCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q 045249 84 CVQQHNKEYEDAMQELEKEKKRGKMIEEEKKKNKSNGRFWWQEGNIIDDMGIEELEEYLKAMKKLKGKVE 153 (211)
Q Consensus 84 ~~~~l~~~~~~l~~el~k~kk~~~~l~~~~~~~~~~~~~~~~~G~~l~~Ls~eeL~~L~~~Le~~l~~V~ 153 (211)
+...|.+.+..|+.+++++.+..+.+.++......+-.+ | +...+ ..+|.+....|+.+...+.
T Consensus 16 RkkkL~~Ki~el~~ei~ke~~~regl~Km~~vY~~nP~~----G-D~~s~-~~~L~e~~~kid~L~~el~ 79 (98)
T 2ke4_A 16 QRKRLQQQLEERSRELQKEVDQREALKKMKDVYEKTPQM----G-DPASL-EPQIAETLSNIERLKLEVQ 79 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCGGG----C-CGGGS-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc----C-CHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 455688889999999999887777777666542222221 2 33333 6677777777766655553
Done!