BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045250
(165 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PYW|A Chain A, Structure Of A. Thaliana 5-Methylthioribose Kinase In
Complex With Adp And Mtr
pdb|2PYW|B Chain B, Structure Of A. Thaliana 5-Methylthioribose Kinase In
Complex With Adp And Mtr
Length = 420
Score = 283 bits (723), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 131/166 (78%), Positives = 150/166 (90%), Gaps = 2/166 (1%)
Query: 1 MAFTEFRPLDDKSLLEYIKATPSLSSKIG--NKFDDLTIKEVGDGNLNFVYIVVGTSGSF 58
M+F EF PL++KSL++YIK+TP+LSSKIG DDL IKEVGDGNLNFV+IVVG+SGS
Sbjct: 1 MSFEEFTPLNEKSLVDYIKSTPALSSKIGADKSDDDLVIKEVGDGNLNFVFIVVGSSGSL 60
Query: 59 VIKQALPYVRCIGESWPMTKERAYFEALALKEHGKLCPDHVPEVYHFDRTMSLIGMRYLE 118
VIKQALPY+RCIGESWPMTKERAYFEA L++HG L PDHVPEVYHFDRTM+LIGMRYLE
Sbjct: 61 VIKQALPYIRCIGESWPMTKERAYFEATTLRKHGNLSPDHVPEVYHFDRTMALIGMRYLE 120
Query: 119 PPHIILRKGLIAGIKYPLLAEHMSEFMAKTLFYTSLLYRTTTEHKR 164
PPHIILRKGLIAGI+YP LA+HMS++MAKTLF+TSLLY TTEH+R
Sbjct: 121 PPHIILRKGLIAGIEYPFLADHMSDYMAKTLFFTSLLYHDTTEHRR 166
>pdb|2OLC|A Chain A, Crystal Structure Of 5-Methylthioribose Kinase In Complex
With Adp-2ho
pdb|2OLC|B Chain B, Crystal Structure Of 5-Methylthioribose Kinase In Complex
With Adp-2ho
pdb|2PU8|A Chain A, Structures Of 5-Methylthioribose Kinase Reveal Substrate
Specificity And Unusual Mode Of Nucleotide Binding
pdb|2PU8|B Chain B, Structures Of 5-Methylthioribose Kinase Reveal Substrate
Specificity And Unusual Mode Of Nucleotide Binding
pdb|2PUI|A Chain A, Structures Of 5-Methylthioribose Kinase Reveal Substrate
Specificity And Unusual Mode Of Nucleotide Binding
pdb|2PUI|B Chain B, Structures Of 5-Methylthioribose Kinase Reveal Substrate
Specificity And Unusual Mode Of Nucleotide Binding
pdb|2PUL|A Chain A, Structures Of 5-Methylthioribose Kinase Reveal Substrate
Specificity And Unusual Mode Of Nucleotide Binding
pdb|2PUL|B Chain B, Structures Of 5-Methylthioribose Kinase Reveal Substrate
Specificity And Unusual Mode Of Nucleotide Binding
pdb|2PUN|A Chain A, Structures Of 5-Methylthioribose Kinase Reveal Substrate
Specificity And Unusual Mode Of Nucleotide Binding
pdb|2PUN|B Chain B, Structures Of 5-Methylthioribose Kinase Reveal Substrate
Specificity And Unusual Mode Of Nucleotide Binding
pdb|2PUP|A Chain A, Structures Of 5-Methylthioribose Kinase Reveal Substrate
Specificity And Unusual Mode Of Nucleotide Binding
pdb|2PUP|B Chain B, Structures Of 5-Methylthioribose Kinase Reveal Substrate
Specificity And Unusual Mode Of Nucleotide Binding
Length = 397
Score = 109 bits (272), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 80/122 (65%), Gaps = 5/122 (4%)
Query: 35 LTIKEVGDGNLNFVYIVVGT--SGSFVIKQALPYVRCIGESWPMTKERAYFEALALKEHG 92
LT +E+GDGNLN+V+ + + +IKQA+PY + +GESWP+T +RA E+ AL G
Sbjct: 33 LTCQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQG 92
Query: 93 KLCPDHVPEVYHFDRTMSLIGMRYLEPPHI-ILRKGLIAGIKYPLLAEHMSEFMAKTLFY 151
+ P VP V++ D M++ M L H+ I RKGLI G YP L++H+ EF+ KTLFY
Sbjct: 93 EHVPHLVPRVFYSDTEMAVTVMEDL--SHLKIARKGLIEGENYPHLSQHIGEFLGKTLFY 150
Query: 152 TS 153
+S
Sbjct: 151 SS 152
>pdb|4AE0|A Chain A, Crystal Structure Of Diphtheria Toxin Mutant Crm197
pdb|4AE1|A Chain A, Crystal Structure Of Diphtheria Toxin Mutant Crm197 In
Complex With Nicotinamide
pdb|4AE1|B Chain B, Crystal Structure Of Diphtheria Toxin Mutant Crm197 In
Complex With Nicotinamide
Length = 535
Score = 26.9 bits (58), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 47 FVYIVVGTSGSFVIKQALPYVRCIGESWPMTKERAYFEALALKEHGKL 94
+ Y+ +G+ V + + CI W + +++ + +LKEHG +
Sbjct: 179 YEYMAQACAGNRVRRSVGSSLSCINLDWDVIRDKTKTKIESLKEHGPI 226
>pdb|1MDT|A Chain A, The Refined Structure Of Monomeric Diphtheria Toxin At 2.3
Angstroms Resolution
pdb|1MDT|B Chain B, The Refined Structure Of Monomeric Diphtheria Toxin At 2.3
Angstroms Resolution
pdb|1TOX|A Chain A, Diphtheria Toxin Dimer Complexed With Nad
pdb|1TOX|B Chain B, Diphtheria Toxin Dimer Complexed With Nad
pdb|1XDT|T Chain T, Complex Of Diphtheria Toxin And Heparin-Binding Epidermal
Growth Factor
pdb|1F0L|A Chain A, 1.55 Angstrom Crystal Structure Of Wild Type Diphtheria
Toxin
pdb|1F0L|B Chain B, 1.55 Angstrom Crystal Structure Of Wild Type Diphtheria
Toxin
pdb|1DDT|A Chain A, The Refined Structure Of Dimeric Diphtheria Toxin At 2.0
Angstroms Resolution
pdb|1SGK|A Chain A, Nucleotide-Free Diphtheria Toxin
Length = 535
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 47 FVYIVVGTSGSFVIKQALPYVRCIGESWPMTKERAYFEALALKEHGKL 94
+ Y+ +G+ V + + CI W + +++ + +LKEHG +
Sbjct: 179 YEYMAQACAGNRVRRSVGSSLSCINLDWDVIRDKTKTKIESLKEHGPI 226
>pdb|3A58|A Chain A, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|C Chain C, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|E Chain E, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 320
Score = 26.2 bits (56), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 61/156 (39%), Gaps = 26/156 (16%)
Query: 3 FTEFRPLDDKSLLEYIKATPSLSSKIGNKFDDLTIKEVGDGNLNFVYI---VVGTSGSFV 59
T R ++D ++ + P SK+ NK L I N + I + GSF
Sbjct: 109 ITHVRIIEDS---KFPSSRPPPDSKLENKKKRLLILSAKPNNAKLIQIHKARENSDGSFQ 165
Query: 60 IK---QALPYVRC-----IGESWPMTKERAYF-EALALKEHG-----------KLCPDHV 99
I Q VR I E + +T + Y+ E + KE + HV
Sbjct: 166 IGRTWQLTELVRVEKDLEISEGFILTXSKKYYWETNSAKERTVFIKSLITLYIQTFEGHV 225
Query: 100 PEVYHFDRTMSLIGMRYLEPPHIILRKGLIAGIKYP 135
PE+ ++D ++ + R + I R G ++ IK P
Sbjct: 226 PELVNWDLSLFYLDERSYQRAVITNRPGSVSPIKSP 261
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.417
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,926,229
Number of Sequences: 62578
Number of extensions: 195752
Number of successful extensions: 348
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 340
Number of HSP's gapped (non-prelim): 8
length of query: 165
length of database: 14,973,337
effective HSP length: 91
effective length of query: 74
effective length of database: 9,278,739
effective search space: 686626686
effective search space used: 686626686
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)