BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045251
(163 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2L1O|A Chain A, Zinc To Cadmium Replacement In The A. Thaliana Superman
Cys2his2 Zinc Finger Induces Structural Rearrangements
Of Typical Dna Base Determinant Positions
pdb|1NJQ|A Chain A, Nmr Structure Of The Single Qalggh Zinc Finger Domain
From Arabidopsis Thaliana Superman Protein
Length = 39
Score = 49.3 bits (116), Expect = 9e-07, Method: Composition-based stats.
Identities = 19/25 (76%), Positives = 23/25 (92%)
Query: 32 KSYTCAFCKRGFSNAQALGGHMNIH 56
+SYTC+FCKR F +AQALGGHMN+H
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVH 29
>pdb|4DGW|A Chain A, Crystal Structure Of The Sf3a Splicing Factor Complex Of
U2 Snrnp
Length = 402
Score = 30.8 bits (68), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 32 KSYTCAFCKRGFSNAQALGGHM--NIHRKDRAKLRQF 66
K C FC R F + H+ IH+K+ +K R F
Sbjct: 291 KGIYCPFCSRWFKTSSVFESHLVGKIHKKNESKRRNF 327
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 28.9 bits (63), Expect = 1.3, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 31 VKSYTCAFCKRGFSNAQALGGHMNIHRKDR 60
+K Y C C+R F++ AL H+ IH ++
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 32 KSYTCAFCKRGFSNAQALGGHMNIH 56
K Y C+ C + FS+ Q+L H IH
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIH 35
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 27.3 bits (59), Expect = 3.7, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 32 KSYTCAFCKRGFSNAQALGGHM-NIHRKDR 60
K Y C C +GFS L GH+ +H +R
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSER 40
>pdb|1NR1|A Chain A, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|B Chain B, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|C Chain C, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|D Chain D, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|E Chain E, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|F Chain F, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
Length = 496
Score = 26.6 bits (57), Expect = 7.0, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 93 DRGAVILESSVQEKICTPKSKEEKMTRQLG 122
DRGA I+E + E + T +S+E+K R G
Sbjct: 13 DRGASIVEDKLVEDLRTRESEEQKRNRVRG 42
>pdb|1NQT|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|G Chain G, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|H Chain H, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|I Chain I, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|J Chain J, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|K Chain K, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|L Chain L, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NR7|A Chain A, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|B Chain B, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|C Chain C, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|D Chain D, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|E Chain E, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|F Chain F, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|G Chain G, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|H Chain H, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|I Chain I, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|J Chain J, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|K Chain K, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|L Chain L, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
Length = 496
Score = 26.6 bits (57), Expect = 7.1, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 93 DRGAVILESSVQEKICTPKSKEEKMTRQLG 122
DRGA I+E + E + T +S+E+K R G
Sbjct: 13 DRGASIVEDKLVEDLRTRESEEQKRNRVRG 42
>pdb|1L1F|A Chain A, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|B Chain B, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|C Chain C, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|D Chain D, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|E Chain E, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|F Chain F, Structure Of Human Glutamate Dehydrogenase-Apo Form
Length = 505
Score = 26.6 bits (57), Expect = 7.6, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 93 DRGAVILESSVQEKICTPKSKEEKMTRQLG 122
DRGA I+E + E + T +S+E+K R G
Sbjct: 22 DRGASIVEDKLVEDLRTRESEEQKRNRVRG 51
>pdb|2M0D|A Chain A, Solution Structure Of Miz-1 Zinc Finger 5
Length = 30
Score = 26.2 bits (56), Expect = 9.9, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 31 VKSYTCAFCKRGFSNAQALGGHMNIHRKDR 60
+K Y C +C R FS+ + H+ H D+
Sbjct: 1 MKPYQCDYCGRSFSDPTSKMRHLETHDTDK 30
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.309 0.124 0.334
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,669,748
Number of Sequences: 62578
Number of extensions: 118886
Number of successful extensions: 410
Number of sequences better than 100.0: 25
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 386
Number of HSP's gapped (non-prelim): 28
length of query: 163
length of database: 14,973,337
effective HSP length: 91
effective length of query: 72
effective length of database: 9,278,739
effective search space: 668069208
effective search space used: 668069208
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.7 bits)