BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045253
         (694 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|A7Z7S6|Y2694_BACA2 UPF0354 protein RBAM_026940 OS=Bacillus amyloliquefaciens (strain
           FZB42) GN=RBAM_026940 PE=3 SV=1
          Length = 269

 Score = 36.6 bits (83), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 16/84 (19%)

Query: 251 VTSATSFPMQTFDGLPRVLEEHTCLT-----IKKVKSYQILCNSMTVPESNEEYSLK--- 302
           V  +TSFP QT DG+P V ++HT  T     +   K+Y+++ + M   E+  +  ++   
Sbjct: 93  VIRSTSFPDQTSDGIPLVYDDHTAETRIYYALDLGKTYRLIDSRMLEKENWTKERIRETA 152

Query: 303 --NFQTIP------TISQNLPFFF 318
             N +++P      T++ N  +FF
Sbjct: 153 SFNLRSLPSVVKQDTVADNYFYFF 176


>sp|Q53R12|T4S20_HUMAN Transmembrane 4 L6 family member 20 OS=Homo sapiens GN=TM4SF20 PE=2
           SV=1
          Length = 229

 Score = 33.5 bits (75), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 19/65 (29%), Positives = 33/65 (50%)

Query: 275 LTIKKVKSYQILCNSMTVPESNEEYSLKNFQTIPTISQNLPFFFFLFCMKLLNYRTPKTD 334
           ++I+ +    ++CNS +   +N E+SLKN   I   S NL +FF   C     +  P ++
Sbjct: 104 ISIQALLKGPLMCNSPSNSNANCEFSLKNISDIHPESFNLQWFFNDSCAPPTGFNKPTSN 163

Query: 335 GSTNS 339
            +  S
Sbjct: 164 DTMAS 168


>sp|E8XWL7|AAEB_RAHSY p-hydroxybenzoic acid efflux pump subunit AaeB OS=Rahnella sp.
           (strain Y9602) GN=aaeB PE=3 SV=1
          Length = 652

 Score = 33.5 bits (75), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 63/159 (39%), Gaps = 33/159 (20%)

Query: 367 FQCSFSLGL--AVLFGLLFSKPNGIWSGLSAAI------------SFATA-REATFKRTV 411
           F C  +  +  A++ G         WS ++AAI             FA A R   F R +
Sbjct: 11  FACKLTFAILGALVLGFYLQLETPRWSAMTAAIVTSGPALAAGGEPFAGAIRHRGFLRVI 70

Query: 412 YGVLGCF------LFEKLLPIRFLFLF-------PWFIFTSFLRHGRMYGQG-GGISAVI 457
              +GC       +     P+  L L         W+  +S +R    Y  G  G +A+I
Sbjct: 71  GTFIGCIAALVIVIATARAPVVMLLLCCIWAGVCTWW--SSLVRIENSYALGLAGYTALI 128

Query: 458 GAVLILGRKSFGPPEEFAIARIVETFIGLTCTIIGELLF 496
             +++    S     +FA+ R  E  IG+ C I+ +LLF
Sbjct: 129 --IVVTSASSPLQTPQFAVERCSEIVIGICCAIVADLLF 165


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.137    0.407 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 239,222,389
Number of Sequences: 539616
Number of extensions: 9648755
Number of successful extensions: 29619
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 55
Number of HSP's that attempted gapping in prelim test: 29599
Number of HSP's gapped (non-prelim): 72
length of query: 694
length of database: 191,569,459
effective HSP length: 125
effective length of query: 569
effective length of database: 124,117,459
effective search space: 70622834171
effective search space used: 70622834171
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 65 (29.6 bits)