Query 045253
Match_columns 694
No_of_seqs 85 out of 87
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 11:22:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045253.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045253hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10631 p-hydroxybenzoic acid 99.8 8E-20 1.7E-24 208.6 16.1 150 358-511 4-180 (652)
2 PF04632 FUSC: Fusaric acid re 99.8 1.2E-19 2.5E-24 204.4 13.6 150 362-511 1-164 (650)
3 PF11744 ALMT: Aluminium activ 99.6 2.6E-14 5.7E-19 156.1 17.0 235 358-601 6-317 (406)
4 PRK11427 multidrug efflux syst 99.5 3.6E-13 7.7E-18 154.5 21.2 150 361-511 349-515 (683)
5 TIGR01667 YCCS_YHJK integral m 99.5 1.1E-13 2.4E-18 160.0 15.4 151 358-511 378-538 (701)
6 TIGR01666 YCCS hypothetical me 99.4 5.2E-12 1.1E-16 146.4 17.6 152 357-511 375-535 (704)
7 PRK11427 multidrug efflux syst 99.3 2.1E-11 4.6E-16 140.2 12.0 147 363-511 30-192 (683)
8 PF04632 FUSC: Fusaric acid re 99.1 4E-09 8.8E-14 119.5 21.7 160 362-523 339-517 (650)
9 COG1289 Predicted membrane pro 99.1 1.8E-09 3.8E-14 124.6 16.1 154 358-511 6-174 (674)
10 COG1289 Predicted membrane pro 98.8 1.9E-08 4.1E-13 116.3 10.1 187 357-545 349-553 (674)
11 PF13515 FUSC_2: Fusaric acid 98.7 9.2E-09 2E-13 93.1 4.1 115 375-492 1-128 (128)
12 PF06081 DUF939: Bacterial pro 98.6 7.2E-08 1.6E-12 91.7 6.0 125 365-496 6-141 (141)
13 COG4129 Predicted membrane pro 98.5 1.4E-06 3E-11 94.0 15.3 183 362-557 9-211 (332)
14 PF11744 ALMT: Aluminium activ 98.5 3.2E-07 6.9E-12 101.1 9.7 215 19-235 10-260 (406)
15 PRK10631 p-hydroxybenzoic acid 98.0 0.0048 1E-07 72.4 28.5 219 363-597 353-598 (652)
16 PF10337 DUF2422: Protein of u 97.0 0.21 4.5E-06 56.1 24.1 187 363-561 62-322 (459)
17 PF11168 DUF2955: Protein of u 94.9 0.069 1.5E-06 51.2 6.6 125 366-493 2-137 (140)
18 KOG4711 Predicted membrane pro 94.7 0.004 8.6E-08 72.5 -2.7 153 357-509 87-263 (625)
19 PF12805 FUSC-like: FUSC-like 93.8 0.98 2.1E-05 47.6 13.1 86 423-511 22-107 (284)
20 PF10334 DUF2421: Protein of u 93.2 0.53 1.1E-05 48.3 9.5 47 512-559 65-111 (229)
21 TIGR01667 YCCS_YHJK integral m 90.0 0.47 1E-05 56.5 5.9 50 134-183 507-556 (701)
22 TIGR02865 spore_II_E stage II 89.8 9.9 0.00022 46.1 16.7 100 398-509 190-291 (764)
23 TIGR01666 YCCS hypothetical me 89.5 26 0.00057 42.3 19.7 143 359-511 4-165 (704)
24 PRK12821 aspartyl/glutamyl-tRN 72.2 53 0.0012 38.0 12.6 31 365-398 91-121 (477)
25 COG4129 Predicted membrane pro 71.6 14 0.0003 40.8 7.9 48 133-180 130-178 (332)
26 PF10334 DUF2421: Protein of u 70.9 25 0.00053 36.3 9.1 105 150-254 1-110 (229)
27 PRK06746 peptide chain release 38.0 63 0.0014 35.8 5.8 32 519-553 1-32 (326)
28 smart00845 GatB_Yqey GatB doma 35.7 45 0.00096 32.2 3.8 43 640-694 88-130 (147)
29 PRK10921 twin-arginine protein 33.7 60 0.0013 34.5 4.7 119 358-497 100-231 (258)
30 PF12732 YtxH: YtxH-like prote 31.4 2.8E+02 0.0061 23.7 7.7 47 136-183 5-51 (74)
31 KOG2662 Magnesium transporters 31.3 6.9E+02 0.015 28.9 12.5 24 641-665 298-321 (414)
32 PF11345 DUF3147: Protein of u 29.8 1E+02 0.0022 28.9 5.0 71 370-440 9-102 (108)
33 PF10337 DUF2422: Protein of u 29.1 1.2E+02 0.0026 34.5 6.4 57 130-186 192-248 (459)
34 COG0811 TolQ Biopolymer transp 28.9 1E+02 0.0022 31.8 5.3 82 78-181 126-209 (216)
35 PRK00591 prfA peptide chain re 27.8 1.3E+02 0.0029 33.7 6.3 37 512-551 15-51 (359)
36 PRK05589 peptide chain release 27.4 1.5E+02 0.0032 33.0 6.5 29 520-551 2-30 (325)
37 PRK00578 prfB peptide chain re 27.0 1.6E+02 0.0034 33.3 6.7 37 512-551 32-68 (367)
38 TIGR00019 prfA peptide chain r 24.4 1.7E+02 0.0037 32.9 6.4 40 512-551 16-55 (360)
39 PF02637 GatB_Yqey: GatB domai 24.3 64 0.0014 30.9 2.8 43 640-694 89-131 (148)
40 TIGR00020 prfB peptide chain r 23.8 1.8E+02 0.0039 32.8 6.4 37 512-551 32-68 (364)
41 PTZ00233 variable surface prot 22.3 34 0.00075 39.9 0.6 28 366-394 435-462 (509)
42 PRK14417 membrane protein; Pro 22.0 2.7E+02 0.0059 29.7 7.0 136 363-518 60-210 (232)
43 PRK07342 peptide chain release 21.0 2E+02 0.0043 32.3 6.0 31 519-552 3-33 (339)
No 1
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=99.82 E-value=8e-20 Score=208.57 Aligned_cols=150 Identities=23% Similarity=0.415 Sum_probs=119.9
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHhcCCCCcccHHHHHHH-----HHhCCCcccc-----------chheehhhhhhhc
Q 045253 358 VKSKRFMPAFQCSFSLGLAVLFGLLFSKPNGIWSGLSAAIS-----FATAREATFK-----------RTVYGVLGCFLFE 421 (694)
Q Consensus 358 ~~~~~l~~A~K~slAivLA~~lgl~f~~e~gyWA~lt~AIa-----~~ag~~~Tf~-----------GTv~G~l~~~v~~ 421 (694)
.++.+++||+|+++|++||+++++++++|+||||++|++|. |++|++|.-. ||++|+++++++.
T Consensus 4 p~~~~~~falk~~lA~~LAL~ia~~l~L~~P~WA~~Tv~iv~~~~~~~~g~qp~~G~v~~K~~~Ri~GTliGa~~~l~l~ 83 (652)
T PRK10631 4 IANQRLRFAVKLAFAIVLALFVGFHFQLETPRWAVLTAAIVAAGPAFAAGGEPFSGAIRYRGMLRIIGTFIGCIAALVII 83 (652)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHcccccccccCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677999999999999999999999999999999999985 4666665322 8888888775544
Q ss_pred ----chhhHHHHhhhHHHHHHHHHh------cCcccccccchhhhhheeEEeeec-cCCCchHHHHHHHHHHHHHHHHHH
Q 045253 422 ----KLLPIRFLFLFPWFIFTSFLR------HGRMYGQGGGISAVIGAVLILGRK-SFGPPEEFAIARIVETFIGLTCTI 490 (694)
Q Consensus 422 ----~~~~l~~l~Lf~W~~~ssfm~------~s~~Yg~ag~vaA~~~aiiilg~~-~~~~~~~fAv~Ri~Et~IGI~c~i 490 (694)
+.|.+..+.|..|+++|.|+. ++|.+.++|++ +++|++... +.+..+++|+.|+.||+|||+|++
T Consensus 84 ~~f~~~p~l~~l~l~lWig~c~~~s~l~r~~~sY~~~LaGyT----a~iI~~~~~~~p~~~f~~A~~R~~Ei~iGi~ca~ 159 (652)
T PRK10631 84 IATIRAPLLMILLCCIWAGFCTWISSLVRVENSYAWGLAGYT----ALIIVITIQPEPLLTPQFAVERCSEIVIGIVCAI 159 (652)
T ss_pred HHhcCChHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH----HHHHHHhccCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 668888899999999998865 23333445555 445554433 344578999999999999999999
Q ss_pred hhHhhcccCchhHHHHHHhhH
Q 045253 491 IGELLFQSTRASTLAKSQLSK 511 (694)
Q Consensus 491 lVell~~P~ras~l~r~~l~~ 511 (694)
+|+.+|+|++.+..++.++.+
T Consensus 160 lv~~l~~P~~~~~~l~~~l~~ 180 (652)
T PRK10631 160 LADLLFSPRSIKQEVDRELDS 180 (652)
T ss_pred HHHHHhCCcchHHHHHHHHHH
Confidence 999999999998888888776
No 2
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=99.81 E-value=1.2e-19 Score=204.36 Aligned_cols=150 Identities=19% Similarity=0.316 Sum_probs=126.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCcccc-------chheehhhhhh----hcchhhHHHHh
Q 045253 362 RFMPAFQCSFSLGLAVLFGLLFSKPNGIWSGLSAAISFATAREATFK-------RTVYGVLGCFL----FEKLLPIRFLF 430 (694)
Q Consensus 362 ~l~~A~K~slAivLA~~lgl~f~~e~gyWA~lt~AIa~~ag~~~Tf~-------GTv~G~l~~~v----~~~~~~l~~l~ 430 (694)
+++||+|+++|++||+++++++++++||||.+|+.|.++...+.+.. ||++|.+++++ |.+.|.+.++.
T Consensus 1 ~~~~alr~~lA~~lAl~ia~~l~l~~p~WA~~tv~iV~qp~~G~~~~k~~~R~~GT~iGa~~~~~lv~~~~~~p~l~~~~ 80 (650)
T PF04632_consen 1 RLRFALRTALAAMLALYIAFWLQLPHPYWAAMTVFIVSQPSSGASLSKGLYRLIGTLIGAAAGLLLVALFPQSPLLFLLA 80 (650)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 57899999999999999999999999999999999998877664444 77777666644 55778899999
Q ss_pred hhHHHHHHHHHhc--CcccccccchhhhhheeEEeeec-cCCCchHHHHHHHHHHHHHHHHHHhhHhhcccCchhHHHHH
Q 045253 431 LFPWFIFTSFLRH--GRMYGQGGGISAVIGAVLILGRK-SFGPPEEFAIARIVETFIGLTCTIIGELLFQSTRASTLAKS 507 (694)
Q Consensus 431 Lf~W~~~ssfm~~--s~~Yg~ag~vaA~~~aiiilg~~-~~~~~~~fAv~Ri~Et~IGI~c~ilVell~~P~ras~l~r~ 507 (694)
+.+|+++|.|+.. ...++|++.++.+|+++|.+... +.+..++.|+.|+.||+|||+|+++|+.+|+|+++...++.
T Consensus 81 lal~i~~c~~~~~~~~~~~~y~~~lag~T~~iv~~~~~~~p~~~f~~a~~R~~ei~iGi~~a~~v~~l~~P~~~~~~l~~ 160 (650)
T PF04632_consen 81 LALWIGLCLYLSLLDRNFRSYAFMLAGYTAAIVALPAVGNPEQVFDLALWRVLEILIGILCATLVSMLFFPQRARRQLRR 160 (650)
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 9999999999885 33347777777788888776554 44557899999999999999999999999999999999999
Q ss_pred HhhH
Q 045253 508 QLSK 511 (694)
Q Consensus 508 ~l~~ 511 (694)
++.+
T Consensus 161 ~l~~ 164 (650)
T PF04632_consen 161 RLAQ 164 (650)
T ss_pred HHHH
Confidence 9888
No 3
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=99.59 E-value=2.6e-14 Score=156.09 Aligned_cols=235 Identities=18% Similarity=0.213 Sum_probs=173.9
Q ss_pred cccccchhhHHHHHHHHHHHHHHHH------hcCCCCcccHHHHHHHHHhCCCcccc-------chheehhhhhhh----
Q 045253 358 VKSKRFMPAFQCSFSLGLAVLFGLL------FSKPNGIWSGLSAAISFATAREATFK-------RTVYGVLGCFLF---- 420 (694)
Q Consensus 358 ~~~~~l~~A~K~slAivLA~~lgl~------f~~e~gyWA~lt~AIa~~ag~~~Tf~-------GTv~G~l~~~v~---- 420 (694)
-+++|++|++|.++|+.|.-++-++ ++ .++.||.+|+++.|.-.-++|+. ||+.|-+.++..
T Consensus 6 ~d~rr~~~~lkvglal~lvsl~~~~~~~~~~~~-~~~~WavlTVvvvfe~tvGatl~KG~nR~lGTl~aG~La~~~~~la 84 (406)
T PF11744_consen 6 DDPRRVIHSLKVGLALTLVSLLYFVGPLYDGFG-QNAMWAVLTVVVVFEPTVGATLSKGLNRGLGTLLAGILAFGVSWLA 84 (406)
T ss_pred cCcchhhhhHHHHHHHHHHHHHHHhhhhhhhhh-hcchHHHhhhHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5668899999999999999766542 22 57899999999988877676665 777754444433
Q ss_pred cc-----hhhHHHHhhhHHHHHHHHHhcC----cccccccchhhhhheeEEeeeccCCCchHHHHHHHHHHHHHHHHHHh
Q 045253 421 EK-----LLPIRFLFLFPWFIFTSFLRHG----RMYGQGGGISAVIGAVLILGRKSFGPPEEFAIARIVETFIGLTCTII 491 (694)
Q Consensus 421 ~~-----~~~l~~l~Lf~W~~~ssfm~~s----~~Yg~ag~vaA~~~aiiilg~~~~~~~~~fAv~Ri~Et~IGI~c~il 491 (694)
.. -+.+..+.+|+|..+++|+|.- .+|+|+|.+..+|-.+|.+++...+.....|+.|+.-|+||++..++
T Consensus 85 ~~~g~~~~~~~i~~~vFi~~~~atf~r~~P~~k~rydYg~~Vf~LTf~lV~vs~yr~~~~~~~A~~R~~~I~iGv~i~l~ 164 (406)
T PF11744_consen 85 SLSGDPGEPIVIGISVFIIGFIATFVRFIPKIKARYDYGGLVFILTFCLVAVSGYRTDEFLMLAVWRLLTIVIGVAICLL 164 (406)
T ss_pred HhcCccchhHHHHHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHhheeecCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 21 2456778888888889999954 34999999999999999998877777899999999999999999999
Q ss_pred hHhhcccCchhHHHHHHhhH-------------------------------------------------HHHHHHhhcCC
Q 045253 492 GELLFQSTRASTLAKSQLSK-------------------------------------------------RTFIREADVEP 522 (694)
Q Consensus 492 Vell~~P~ras~l~r~~l~~-------------------------------------------------~~~l~eA~~EP 522 (694)
|.++++|..|...++....+ ++++.-|.-||
T Consensus 165 vsi~IfPvwAg~~Lh~~~a~~leklA~~le~~v~~y~~~~~~~~~~~~~~~~~~~~~~yk~vl~Sk~~eesL~~~A~WEP 244 (406)
T PF11744_consen 165 VSIFIFPVWAGEDLHKLTAKNLEKLANSLEGCVEEYFKCSEDEILDYQQESDDPLLQGYKSVLNSKSQEESLANFARWEP 244 (406)
T ss_pred HHHheeechhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccccccccccHHHHhhhHHhCCcccHHHHhhhhhhcc
Confidence 99999999997666666555 77888899999
Q ss_pred CCCCCCC--chHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhhhhhcchhHHHHHHHhhhhhhhhhhhHh
Q 045253 523 NFGFLPF--HSACYSKLLVSLVKMVHLLHFCSYSIGFLEQESQKIDKASWKEDVQKLDGDVKLVKEMACSSIKCFNDAIT 600 (694)
Q Consensus 523 ~~W~~pF--~~~~Y~kvl~s~~rl~~Ll~~~~~av~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~k~~~~~i~ 600 (694)
..++-.| |-..|.|+-+.+|+-.-.+..+ -+++..+.|.+ .+..+++.+...+...-.+..|+.+.+.|.
T Consensus 245 ~HG~f~f~~Pw~~Y~kig~~lR~cay~v~AL---~gcl~seiq~p-----~~~r~~~~~~~~~~~~e~~kvLrel~~~ik 316 (406)
T PF11744_consen 245 PHGRFRFRHPWKQYLKIGALLRHCAYCVEAL---HGCLNSEIQAP-----PELRQKFQEECTRVSSESAKVLRELSNSIK 316 (406)
T ss_pred cccCCccCCcHHHHHHHHHHHHHHHHHHHHH---Hhccccccccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8865544 6699999988877766554444 23334444433 355556666666655555555555554443
Q ss_pred h
Q 045253 601 T 601 (694)
Q Consensus 601 ~ 601 (694)
.
T Consensus 317 ~ 317 (406)
T PF11744_consen 317 T 317 (406)
T ss_pred h
Confidence 3
No 4
>PRK11427 multidrug efflux system protein MdtO; Provisional
Probab=99.54 E-value=3.6e-13 Score=154.54 Aligned_cols=150 Identities=11% Similarity=-0.055 Sum_probs=103.8
Q ss_pred ccchhhHHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCcccc-------chheehhhhhhhc-----ch---h-
Q 045253 361 KRFMPAFQCSFSLGLAVLFGLLFSKPNGIWSGLSAAISFATAREATFK-------RTVYGVLGCFLFE-----KL---L- 424 (694)
Q Consensus 361 ~~l~~A~K~slAivLA~~lgl~f~~e~gyWA~lt~AIa~~ag~~~Tf~-------GTv~G~l~~~v~~-----~~---~- 424 (694)
..+++|+|+++|+++++++...++|++|||+.+|+.|...-..+.|+. ||++|.++++++. .. +
T Consensus 349 ~~~R~ALRt~lAa~La~~i~~~l~w~~pyWamLTvvIVsqP~~GaT~sRa~~RiiGTliGallA~ll~v~l~P~l~~~~~ 428 (683)
T PRK11427 349 DYMRYALKTLLACLICYTFYSGVDWEGIHTCMLTCVIVANPNVGSSYQKMVLRFGGAFCGAILALLFTLLVMPWLDNIVE 428 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 458999999999999999999999999999999988877665555553 8888888764444 21 1
Q ss_pred hHHHHhhhHHHHHHHHHhcCcccccccchhhhhheeEEeee-ccCCCchHHHHHHHHHHHHHHHHHHhhHhhcccCchhH
Q 045253 425 PIRFLFLFPWFIFTSFLRHGRMYGQGGGISAVIGAVLILGR-KSFGPPEEFAIARIVETFIGLTCTIIGELLFQSTRAST 503 (694)
Q Consensus 425 ~l~~l~Lf~W~~~ssfm~~s~~Yg~ag~vaA~~~aiiilg~-~~~~~~~~fAv~Ri~Et~IGI~c~ilVell~~P~ras~ 503 (694)
.+..+..+.|++...... ...|+|++...+++..++.+.. ............|+.+|++|++|+.++..++||.+...
T Consensus 429 Llllllp~~llg~wv~~~-~~R~sYa~~~ag~T~~li~L~~l~~p~~d~~~i~dRvl~tLLGi~iA~la~~lVwP~~~~~ 507 (683)
T PRK11427 429 LLFVLAPIFLLGAWIATS-SERSSYIGTQMVVTFALATLENVFGPVYDLVEIRDRALGILIGTVVSAVIYTFVWPESEAR 507 (683)
T ss_pred HHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHhhcccCcccchHHHHHHHHHHHHHHHHHHHHHHhcCCCchHH
Confidence 122333444444433222 2335666666566665554422 11111233455699999999999999999999998877
Q ss_pred HHHHHhhH
Q 045253 504 LAKSQLSK 511 (694)
Q Consensus 504 l~r~~l~~ 511 (694)
.++..+.+
T Consensus 508 ~L~~~l~~ 515 (683)
T PRK11427 508 TLPQKLAG 515 (683)
T ss_pred HHHHHHHH
Confidence 77777665
No 5
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=99.52 E-value=1.1e-13 Score=160.04 Aligned_cols=151 Identities=20% Similarity=0.104 Sum_probs=110.8
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCcccc-------chheehhhhhhhcch---hhHH
Q 045253 358 VKSKRFMPAFQCSFSLGLAVLFGLLFSKPNGIWSGLSAAISFATAREATFK-------RTVYGVLGCFLFEKL---LPIR 427 (694)
Q Consensus 358 ~~~~~l~~A~K~slAivLA~~lgl~f~~e~gyWA~lt~AIa~~ag~~~Tf~-------GTv~G~l~~~v~~~~---~~l~ 427 (694)
.++.-+++|+|+++++++|++++.+++.++|||..+|+.+.+..+.+.|+. ||++|++++.++... +..
T Consensus 378 ~~S~~fRhAlR~ala~~~a~~i~~~l~l~~gyWi~lTv~~V~qP~~~~T~~R~~~Ri~GTl~G~llg~~l~~l~p~~~~- 456 (701)
T TIGR01667 378 PESPLFRHAVRLSLVVMLGYAILMGTALHLGYWILLTTLFVCQPNYGATRLRLVQRIIGTVVGLVIGVALHFLIPSLEG- 456 (701)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHH-
Confidence 556679999999999999999999999999999999999998877666655 999998888665432 222
Q ss_pred HHhhhHHHHHHHHHhcCcccccccchhhhhheeEEeeeccCCCchHHHHHHHHHHHHHHHHHHhhHhhcccCchhHHHHH
Q 045253 428 FLFLFPWFIFTSFLRHGRMYGQGGGISAVIGAVLILGRKSFGPPEEFAIARIVETFIGLTCTIIGELLFQSTRASTLAKS 507 (694)
Q Consensus 428 ~l~Lf~W~~~ssfm~~s~~Yg~ag~vaA~~~aiiilg~~~~~~~~~fAv~Ri~Et~IGI~c~ilVell~~P~ras~l~r~ 507 (694)
.+.+.+|.++..|....+.|+++ +.++|..++++...-..+..++++.|+.+|+||+++++++-.++||......++.
T Consensus 457 ~l~l~v~~~~~~~~~~~~~Y~~a--~~fiT~~vll~~~l~~~~~~~~a~~Rl~DTliG~~iA~~~~~llwP~w~~~~l~~ 534 (701)
T TIGR01667 457 QLTLMVITGVAFFAFRSKNYGWA--TVFITLLVLLCFNLLGLDGEQYILPRLIDTLIGCLIAWGAVSYLWPDWQSRLLRK 534 (701)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHH--HHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHH
Confidence 44555667665554433334443 3333332332212222245678999999999999999999999999988887777
Q ss_pred HhhH
Q 045253 508 QLSK 511 (694)
Q Consensus 508 ~l~~ 511 (694)
++.+
T Consensus 535 ~~~~ 538 (701)
T TIGR01667 535 MLHD 538 (701)
T ss_pred HHHH
Confidence 7776
No 6
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=99.40 E-value=5.2e-12 Score=146.36 Aligned_cols=152 Identities=17% Similarity=0.070 Sum_probs=102.1
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCcccc-------chheehhhhhhhcchh-hH-H
Q 045253 357 KVKSKRFMPAFQCSFSLGLAVLFGLLFSKPNGIWSGLSAAISFATAREATFK-------RTVYGVLGCFLFEKLL-PI-R 427 (694)
Q Consensus 357 ~~~~~~l~~A~K~slAivLA~~lgl~f~~e~gyWA~lt~AIa~~ag~~~Tf~-------GTv~G~l~~~v~~~~~-~l-~ 427 (694)
..++..+++|+|.++++.+|++++.++++++|||..+|+.+.+..+.+.|+. ||++|++++.+...+. .. -
T Consensus 375 ~~~S~~fRhAlRlalal~~a~~i~~~l~l~~gyWi~LTv~~V~qP~~~~T~~R~~~Ri~GTllG~~lg~~ll~l~p~~~~ 454 (704)
T TIGR01666 375 TFESPLFRHAVRLSIVLFLGYAIIQFFGFNLGYWILLTTLFVCQPNYSATKVRLRQRIIGTLLGVVIGSPLLYFNPSLEL 454 (704)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHH
Confidence 3556679999999999999999999999999999999999998876555555 9999888886654321 11 1
Q ss_pred HHhhhHHHHHHHHHhcCcccccccchhhhhheeEEeeeccCCCchHHHHHHHHHHHHHHHHHHhhHhhcccCchhHHHHH
Q 045253 428 FLFLFPWFIFTSFLRHGRMYGQGGGISAVIGAVLILGRKSFGPPEEFAIARIVETFIGLTCTIIGELLFQSTRASTLAKS 507 (694)
Q Consensus 428 ~l~Lf~W~~~ssfm~~s~~Yg~ag~vaA~~~aiiilg~~~~~~~~~fAv~Ri~Et~IGI~c~ilVell~~P~ras~l~r~ 507 (694)
.+++++-.++..|....+.|+++ +.++|..++++...- ++..+++..|+.+|+||.++++++-.++||......++.
T Consensus 455 ~l~liv~~~~l~~~~~~~~Y~~a--~~fiT~~vll~~~l~-g~~~~~~~~Rl~dTlIG~~iAl~a~~li~P~w~~~~l~~ 531 (704)
T TIGR01666 455 QLVLVVLTGVLFFAFRSNNYSFA--TFFITLLVLLCFNVL-GEGAAVLLPRLLDTLIGCAIAWAAVSYIWPDWQYLQLDK 531 (704)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHcc-cchHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHhHHHH
Confidence 11111112222121122335443 222333333221211 245678999999999999999999999999987666666
Q ss_pred HhhH
Q 045253 508 QLSK 511 (694)
Q Consensus 508 ~l~~ 511 (694)
.+.+
T Consensus 532 ~~~~ 535 (704)
T TIGR01666 532 VSHQ 535 (704)
T ss_pred HHHH
Confidence 5555
No 7
>PRK11427 multidrug efflux system protein MdtO; Provisional
Probab=99.26 E-value=2.1e-11 Score=140.16 Aligned_cols=147 Identities=16% Similarity=0.055 Sum_probs=118.9
Q ss_pred chhhHHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCcccc-------chheehhhhhhhc----chhhHHHHhh
Q 045253 363 FMPAFQCSFSLGLAVLFGLLFSKPNGIWSGLSAAISFATAREATFK-------RTVYGVLGCFLFE----KLLPIRFLFL 431 (694)
Q Consensus 363 l~~A~K~slAivLA~~lgl~f~~e~gyWA~lt~AIa~~ag~~~Tf~-------GTv~G~l~~~v~~----~~~~l~~l~L 431 (694)
.-.++|+.++..|++++++.++.+++||+..++=+......+.|-. ||++|+.+.+++. +.|.++.+++
T Consensus 30 ~~~~~r~~~a~~L~l~i~~~l~~P~~a~a~~~vfivsqp~~g~t~~kai~r~vgt~lg~~~~vll~~~~v~~P~l~~l~i 109 (683)
T PRK11427 30 VPQTLQLWVGCLLVILISMTFEIPFLALSLAVLFYGIQSNAFYTKFVAILFVVATVLEIGSLFLIYKWSYGYPLIRLIIA 109 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHheeccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 3345999999999999999999999999988766655555443322 9999998887766 4688999999
Q ss_pred hHHHHHHHHHhcCcccccccchhhhhheeEEeeeccCCCchHHHHHHHHH-----HHHHHHHHHhhHhhcccCchhHHHH
Q 045253 432 FPWFIFTSFLRHGRMYGQGGGISAVIGAVLILGRKSFGPPEEFAIARIVE-----TFIGLTCTIIGELLFQSTRASTLAK 506 (694)
Q Consensus 432 f~W~~~ssfm~~s~~Yg~ag~vaA~~~aiiilg~~~~~~~~~fAv~Ri~E-----t~IGI~c~ilVell~~P~ras~l~r 506 (694)
-.|+++|.|+.+..+.||.|.++++|+ ++.++=.+-.+-++. +.|..| +.+||+|+++|..+++|++...+++
T Consensus 110 alw~~~~lyl~r~~rl~yvf~lag~ta-ii~~~f~~v~~~~E~-~~R~~e~~w~~i~~gi~ca~lV~~l~~P~~~~~~l~ 187 (683)
T PRK11427 110 GPILMGCMFLMRTHRLGLVFFAVAIVA-IYGQTFPAMLDYPEV-VVRLTLWCIVVGLYPTLLMTLIGVLWFPSRAINQMH 187 (683)
T ss_pred HHHHHHHHHHhhccchhHHHHHHHHHH-HHHhhcccccchHHH-HHHHHHHHHHHHHHHHHHHHHHHhHhCcCChHHHHH
Confidence 999999999998777899999999884 443332333332444 899999 9999999999999999999999888
Q ss_pred HHhhH
Q 045253 507 SQLSK 511 (694)
Q Consensus 507 ~~l~~ 511 (694)
.++.+
T Consensus 188 ~~l~~ 192 (683)
T PRK11427 188 QALND 192 (683)
T ss_pred HHHHH
Confidence 88876
No 8
>PF04632 FUSC: Fusaric acid resistance protein family; InterPro: IPR006726 This entry represents the p-hydroxybenzoic acid efflux pump subunit AaeB (pHBA efflux pump protein B) whose substrates are p-hydroxybenzoic acid (pHBA), 6-hydroxy-2-naphthoic and 2-hydroxycinnamate. It could function as a metabolic relief valve, allowing to eliminate certain compounds when they accumulate to high levels in the cell []. This family also includes fusaric acid resistance proteins [], which are likely to be membrane transporter proteins, and uncharacterised transporter YdhK.; GO: 0006810 transport, 0005886 plasma membrane
Probab=99.13 E-value=4e-09 Score=119.53 Aligned_cols=160 Identities=18% Similarity=0.167 Sum_probs=105.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHH--HhCC-Cccc------cchheehhhhhhhc-----ch--hh
Q 045253 362 RFMPAFQCSFSLGLAVLFGLLFSKPNGIWSGLSAAISF--ATAR-EATF------KRTVYGVLGCFLFE-----KL--LP 425 (694)
Q Consensus 362 ~l~~A~K~slAivLA~~lgl~f~~e~gyWA~lt~AIa~--~ag~-~~Tf------~GTv~G~l~~~v~~-----~~--~~ 425 (694)
.++.|+|+.+++.++.++-.+-+|+.|.-+.+.++|.- .+.. +|.- .|+++|+..+++.. +. ..
T Consensus 339 A~~~alra~la~~~~~l~Wi~t~W~~G~~~~~~~~v~~~lfa~~~~P~~~~~~~~~G~l~~~~~a~~~~~~vlP~~~~f~ 418 (650)
T PF04632_consen 339 ALRNALRAFLAILIAGLFWIATGWPSGATAVMMAAVVSSLFATLDNPAPALRLFLIGALLGAVLAFLYLFFVLPHLDGFP 418 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHcCCcChHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHH
Confidence 37899999999999999999999999999999998833 4443 3322 27777766664333 22 22
Q ss_pred HHHHhhhHHHHHHHHHhcCcccccccchhhhhheeEEeeeccCCCc--hHHHHHHHHHHHHHHHHHHhhHhhcccCchhH
Q 045253 426 IRFLFLFPWFIFTSFLRHGRMYGQGGGISAVIGAVLILGRKSFGPP--EEFAIARIVETFIGLTCTIIGELLFQSTRAST 503 (694)
Q Consensus 426 l~~l~Lf~W~~~ssfm~~s~~Yg~ag~vaA~~~aiiilg~~~~~~~--~~fAv~Ri~Et~IGI~c~ilVell~~P~ras~ 503 (694)
+-.++++|-+.+..++..+..|.+.|.-..+. -...+ ..++.+. +...+.+-.=+++|+++..++-.+++|.++..
T Consensus 419 ~L~l~l~~~l~~~~~~~~~p~~~~~g~~~~v~-f~~~~-~~~n~~~~d~~~f~n~~la~l~G~~~a~l~~~li~p~~~~~ 496 (650)
T PF04632_consen 419 LLALVLAPFLFLGGLLMARPRTAYIGLGFAVF-FLLLL-GPGNPYSYDFATFLNRALAILLGIVIAALVFRLIRPFSPEW 496 (650)
T ss_pred HHHHHHHHHHHHHHHHHcCchHHHHHHHHHHH-HHHHh-cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCChhH
Confidence 33555555566677777777776655432222 22222 2233332 33445578888999999999999999999877
Q ss_pred HHHHHhhH-HHHHHHhhcCCC
Q 045253 504 LAKSQLSK-RTFIREADVEPN 523 (694)
Q Consensus 504 l~r~~l~~-~~~l~eA~~EP~ 523 (694)
..|+-+.+ .+-++.+...|.
T Consensus 497 ~~rrl~~~~~~~l~~~~~~~~ 517 (650)
T PF04632_consen 497 RRRRLLRALRRDLARLARGPR 517 (650)
T ss_pred HHHHHHHHHHHHHHHHhhcCC
Confidence 77777766 333334433333
No 9
>COG1289 Predicted membrane protein [Function unknown]
Probab=99.08 E-value=1.8e-09 Score=124.65 Aligned_cols=154 Identities=18% Similarity=0.195 Sum_probs=119.9
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCcccc-------chheehhhhhhhc----chhhH
Q 045253 358 VKSKRFMPAFQCSFSLGLAVLFGLLFSKPNGIWSGLSAAISFATAREATFK-------RTVYGVLGCFLFE----KLLPI 426 (694)
Q Consensus 358 ~~~~~l~~A~K~slAivLA~~lgl~f~~e~gyWA~lt~AIa~~ag~~~Tf~-------GTv~G~l~~~v~~----~~~~l 426 (694)
..+..+++++|+.+|+.+++++|++++.+.|+|+..+++|+....-++-++ ||++|+.++.++. +.|.+
T Consensus 6 ~~~~~~~~~lr~~~a~~la~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~rli~tlig~~~~~~~~~~~~~~p~~ 85 (674)
T COG1289 6 PTNADWRYALRTFLAACLALALAFLLGLPQPSWAVSTVAIVSAPDSGAVLSKGLKRLIGTLIGFAVALLLVALLAQEPWL 85 (674)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCcCCCCHHHhhHHHHHHHHHHHHHHHHHHHHHccCcHH
Confidence 445669999999999999999999999999999999999988755332222 9999999887776 34555
Q ss_pred HHHhhhHHHHHHHHHhcC--cccccccchhhhhheeEEeeeccCCC--chHHHHHHHHHHHHHHHHHHhhHhhcccCchh
Q 045253 427 RFLFLFPWFIFTSFLRHG--RMYGQGGGISAVIGAVLILGRKSFGP--PEEFAIARIVETFIGLTCTIIGELLFQSTRAS 502 (694)
Q Consensus 427 ~~l~Lf~W~~~ssfm~~s--~~Yg~ag~vaA~~~aiiilg~~~~~~--~~~fAv~Ri~Et~IGI~c~ilVell~~P~ras 502 (694)
-.+++..|+++|..+..- ....++..+|-+|.+++.......+| ....|+.|+.|+.+|+.|+-++.+..+|++..
T Consensus 86 f~~~~~~~~~l~~~~~~~~~~~~~~a~~la~yT~~~~~~~~~~~~~~~~~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~ 165 (674)
T COG1289 86 FLLLLTLWLGLCTAIGSLYRTIASYAFVLAGYTALIIGPAPAIPEPELLFDGAVWRVVEILLGILCAPVVPLLESPSRLY 165 (674)
T ss_pred HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHHHHHhccchHhhhHHHHH
Confidence 569999999999887732 22355555655666666522233444 67899999999999999999999999999987
Q ss_pred HHHHHHhhH
Q 045253 503 TLAKSQLSK 511 (694)
Q Consensus 503 ~l~r~~l~~ 511 (694)
..+...+..
T Consensus 166 ~~L~~~l~~ 174 (674)
T COG1289 166 QALANYLEA 174 (674)
T ss_pred HHHHHHHHH
Confidence 777666664
No 10
>COG1289 Predicted membrane protein [Function unknown]
Probab=98.78 E-value=1.9e-08 Score=116.27 Aligned_cols=187 Identities=19% Similarity=0.150 Sum_probs=122.2
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHhC-CCcccc-------chheehhhhhhhcch--hhH
Q 045253 357 KVKSKRFMPAFQCSFSLGLAVLFGLLFSKPNGIWSGLSAAISFATA-REATFK-------RTVYGVLGCFLFEKL--LPI 426 (694)
Q Consensus 357 ~~~~~~l~~A~K~slAivLA~~lgl~f~~e~gyWA~lt~AIa~~ag-~~~Tf~-------GTv~G~l~~~v~~~~--~~l 426 (694)
.+++..+++|+|+++++.++++++.+++|++|||+.+|+++++... .+.|.. ||++|+++++++..+ |..
T Consensus 349 ~~~~~alr~a~R~ala~~~~~~~~~~~~w~~g~w~llt~~vV~~~~~~~~t~~r~~~ri~GTllg~~~g~~~l~~~~p~~ 428 (674)
T COG1289 349 RLNSPALRHALRTALALLLGYAFWLALGWPHGYWILLTAAVVCQPNAYGATRQRARQRILGTLLGLLLGLLVLLLLLPLI 428 (674)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 4677789999999999999999999999999999999999988877 665555 999999999887753 222
Q ss_pred HHHhhhHHHHH--HHHHhcCcccccccchhhhhheeEEeeeccCCCchHHHHHHHHHHHHHHHHHHhhHhhcccCchhHH
Q 045253 427 RFLFLFPWFIF--TSFLRHGRMYGQGGGISAVIGAVLILGRKSFGPPEEFAIARIVETFIGLTCTIIGELLFQSTRASTL 504 (694)
Q Consensus 427 ~~l~Lf~W~~~--ssfm~~s~~Yg~ag~vaA~~~aiiilg~~~~~~~~~fAv~Ri~Et~IGI~c~ilVell~~P~ras~l 504 (694)
..+.++.|++. .++.-....|++++.-..++...+. .....++..+...|..++.+|.+.++++-.++||......
T Consensus 429 ~~~l~~l~~~~~l~~~~~~~~~~~~a~~~i~l~v~~~~--~l~~~~~~~~~~~r~~d~~iG~lIa~~~a~~v~~~~~~~~ 506 (674)
T COG1289 429 PGLLLLLLLAALLFAAGIRLAKYRLATLGITLLVLFLV--GLLGSNGPDYDLPRFLDTLLGSLIALALAFLVWPLWRPRR 506 (674)
T ss_pred hhHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH--HHcccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 22233333332 2222222335555543222211111 2233477889999999999999999999999999855444
Q ss_pred HHHHhhH-----HHHHHHhhcCCCCCC-CCCchHHHHHHHHhHHHHH
Q 045253 505 AKSQLSK-----RTFIREADVEPNFGF-LPFHSACYSKLLVSLVKMV 545 (694)
Q Consensus 505 ~r~~l~~-----~~~l~eA~~EP~~W~-~pF~~~~Y~kvl~s~~rl~ 545 (694)
++....+ ++.++++......=. ..|....+..+....+++.
T Consensus 507 l~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 553 (674)
T COG1289 507 LRRALRRALRALRRDLASALSREPTGRERRFEHNADDALSQLLNLMA 553 (674)
T ss_pred hhHHHHHHHHHHHHHHHHHHhcCCccchhhhhhccHHHHHHHHHHHh
Confidence 4444433 666666665443311 3344444444444444433
No 11
>PF13515 FUSC_2: Fusaric acid resistance protein-like
Probab=98.72 E-value=9.2e-09 Score=93.08 Aligned_cols=115 Identities=20% Similarity=0.314 Sum_probs=78.8
Q ss_pred HHHHHHHHhcCCCCcccHHHHHHHHHhCCCcccc-------chheehhhhhhhcch---hhHHHHhhhHHHHHHHHHhcC
Q 045253 375 LAVLFGLLFSKPNGIWSGLSAAISFATAREATFK-------RTVYGVLGCFLFEKL---LPIRFLFLFPWFIFTSFLRHG 444 (694)
Q Consensus 375 LA~~lgl~f~~e~gyWA~lt~AIa~~ag~~~Tf~-------GTv~G~l~~~v~~~~---~~l~~l~Lf~W~~~ssfm~~s 444 (694)
+|++++.+++.++|+|+.+++.+.+....+.|.. ||++|.+++++.... +....+.++.+.....|.++
T Consensus 1 ~a~~i~~~~~~~~~~W~~it~~~v~~~~~~~~~~~~~~Ri~Gt~iG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 79 (128)
T PF13515_consen 1 LAFFIAQWLGLPHGYWAPITVVSVLSPSYGATVNRAIQRILGTLIGVVLGLLLLYLFPGNYVLILIVFLLMFLIFYFLS- 79 (128)
T ss_pred ChhhHHHHHcCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHh-
Confidence 4678888999999999999998888766555544 777777777555532 33344445545444545543
Q ss_pred cccccccchhhhhheeEEeeec---cCCCchHHHHHHHHHHHHHHHHHHhh
Q 045253 445 RMYGQGGGISAVIGAVLILGRK---SFGPPEEFAIARIVETFIGLTCTIIG 492 (694)
Q Consensus 445 ~~Yg~ag~vaA~~~aiiilg~~---~~~~~~~fAv~Ri~Et~IGI~c~ilV 492 (694)
++|.+...+++..++++... +++++.+.+..|+.++.+|+++++++
T Consensus 80 --~~y~~~~~~~t~~~v~~~~~~~~~~~~~~~~~~~R~~~v~iG~~i~~~v 128 (128)
T PF13515_consen 80 --KNYAIAQIFITVMVVLLFSLIHPGNGDPWQLALERILDVLIGILIALLV 128 (128)
T ss_pred --ccHHHHHHHHHHHHHHHHHHHccCCCChHHHHHHHHHHHHHHHHHHHhC
Confidence 44455555555555555443 35667889999999999999999864
No 12
>PF06081 DUF939: Bacterial protein of unknown function (DUF939); InterPro: IPR010343 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=98.58 E-value=7.2e-08 Score=91.73 Aligned_cols=125 Identities=22% Similarity=0.251 Sum_probs=85.4
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCcccc-------chheehhhhhhhcc----hhhHHHHhhhH
Q 045253 365 PAFQCSFSLGLAVLFGLLFSKPNGIWSGLSAAISFATAREATFK-------RTVYGVLGCFLFEK----LLPIRFLFLFP 433 (694)
Q Consensus 365 ~A~K~slAivLA~~lgl~f~~e~gyWA~lt~AIa~~ag~~~Tf~-------GTv~G~l~~~v~~~----~~~l~~l~Lf~ 433 (694)
.-+|+++|..+|++++.++++++|++|++++.++++.....|++ |+++|.+.++.+.. -+...-+.++.
T Consensus 6 r~iKtaiA~~la~~ia~~l~~~~~~~A~i~Ail~~q~T~~~S~~~~~~Ri~~~~iG~~~a~~~~~~~g~~~~~~~l~v~i 85 (141)
T PF06081_consen 6 RTIKTAIAAFLAILIAQLLGLQYPFFAPIAAILSMQPTVYRSLKQGLNRILGTLIGALLALLFFLILGYNPLSIGLAVII 85 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCchHHHHHHHhheeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHHHH
Confidence 46899999999999999999999999999999999888655555 77777777765553 23323333333
Q ss_pred HHHHHHHHhcCcccccccchhhhhheeEEeeeccCCCchHHHHHHHHHHHHHHHHHHhhHhhc
Q 045253 434 WFIFTSFLRHGRMYGQGGGISAVIGAVLILGRKSFGPPEEFAIARIVETFIGLTCTIIGELLF 496 (694)
Q Consensus 434 W~~~ssfm~~s~~Yg~ag~vaA~~~aiiilg~~~~~~~~~fAv~Ri~Et~IGI~c~ilVell~ 496 (694)
-+..|..++. +..-.+++++. +.++.. .++ ...++..|+.||++|++.+++|-+++
T Consensus 86 ~i~~~~~l~~----~~~~~~a~v~~-~~i~~~-~~~-~~~~~~~r~l~t~iG~~va~lVN~~~ 141 (141)
T PF06081_consen 86 TIPICNWLKL----GEGIIVAAVTF-VHILLS-GSD-SFSYALNRVLLTLIGIGVALLVNLLM 141 (141)
T ss_pred HHHHHHHhCC----CCeehHHHHHH-HHHHHc-CCc-cHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3444555554 22223444433 333333 222 33459999999999999999998764
No 13
>COG4129 Predicted membrane protein [Function unknown]
Probab=98.55 E-value=1.4e-06 Score=94.01 Aligned_cols=183 Identities=17% Similarity=0.212 Sum_probs=117.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCcccc-----------chheehhhhhhhcchhhHHHHh
Q 045253 362 RFMPAFQCSFSLGLAVLFGLLFSKPNGIWSGLSAAISFATAREATFK-----------RTVYGVLGCFLFEKLLPIRFLF 430 (694)
Q Consensus 362 ~l~~A~K~slAivLA~~lgl~f~~e~gyWA~lt~AIa~~ag~~~Tf~-----------GTv~G~l~~~v~~~~~~l~~l~ 430 (694)
.....+|+++|+.||++++-++++++|..|++++++++...+..|+. |.++|++...+|...|....+.
T Consensus 9 ig~RtlKt~ia~~La~~ia~~l~~~~~~~A~i~AV~~l~~t~~~s~~~~~~r~~g~~iG~~~a~l~~~l~g~~~~~~~v~ 88 (332)
T COG4129 9 IGARTLKTGLAAGLALLIAHLLGLPQPAFAGISAVLCLSPTIKRSLKRALQRLLGNALGAILAVLFFLLFGQNPIAFGVV 88 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHhhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHH
Confidence 34678999999999999999999999999999999999988766555 5555555556666677777777
Q ss_pred hhHHHHHHHHHhcCcccccccchhh-hhheeEEeeeccCCCchHHHHHHHHHHHHHHHHHHhhHhhcccCc-hhHHHHHH
Q 045253 431 LFPWFIFTSFLRHGRMYGQGGGISA-VIGAVLILGRKSFGPPEEFAIARIVETFIGLTCTIIGELLFQSTR-ASTLAKSQ 508 (694)
Q Consensus 431 Lf~W~~~ssfm~~s~~Yg~ag~vaA-~~~aiiilg~~~~~~~~~fAv~Ri~Et~IGI~c~ilVell~~P~r-as~l~r~~ 508 (694)
+.+-+.+|+.++- ..|-+.+ ++...+++ ....++..-++ |..=++||+..+++|-.++-|.+ .-...+..
T Consensus 89 ~~i~i~~~~~~~~-----~~g~~~~~~~~~~ii~-~~~~~~~~~~~--r~l~~~vG~~~a~lvn~~~~~~~~~~~~~~~k 160 (332)
T COG4129 89 LLIIIPLLVLLKL-----ENGVVPITVGVLHILV-AAMIPLFLIFN--RFLLVFVGVGVAFLVNLVMPPPDYELKLYRAK 160 (332)
T ss_pred HHHHHHHHHHHhc-----ccchhHHHHHHHHHHH-HcccchhHHHH--HHHHHHHHHHHHHHHhhhcCCchHHHHHHHHH
Confidence 7766667777663 2222222 22222222 22223333333 99999999999999999998886 33333333
Q ss_pred hhH------HHHHHHhh-cCCCCCCCCCchHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 045253 509 LSK------RTFIREAD-VEPNFGFLPFHSACYSKLLVSLVKMVHLLHFCSYSIGF 557 (694)
Q Consensus 509 l~~------~~~l~eA~-~EP~~W~~pF~~~~Y~kvl~s~~rl~~Ll~~~~~av~~ 557 (694)
+.. +.....=. .||.-| ...|++..+.+.++..++.+..+.-.+
T Consensus 161 v~~~~~~il~~~~~~l~~~~~~~~-----~~~~~~l~~~~~~~~~l~~~~~~e~~~ 211 (332)
T COG4129 161 VEAILASILWEVASYLRDTESAEL-----DKDLEALLRLLIKLAKLIAYRREENHF 211 (332)
T ss_pred HHHHHHHHHHHHHHHHhcCCcccc-----chhHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 322 11111111 222222 345666777777777776666554444
No 14
>PF11744 ALMT: Aluminium activated malate transporter; InterPro: IPR020966 This entry represents an malate transporter which has been is identified as being critical for aluminium tolerance in Arabidopsis thaliana [].; GO: 0010044 response to aluminum ion
Probab=98.52 E-value=3.2e-07 Score=101.12 Aligned_cols=215 Identities=19% Similarity=0.281 Sum_probs=126.8
Q ss_pred HHhhhhhHhhhhheeecccccCCCCCccceeeccchhhhhhheecCCccchhHhhhhc----h-----------------
Q 045253 19 CLASAYRTAVACTIVGSITFYGPSSRRGQVTFPAFSYVTVILIVTDATLGDTALDRLT----T----------------- 77 (694)
Q Consensus 19 ~L~salRtalac~Ivg~~~~Y~p~~~~~~~~FPafsYv~~ivIvsdatlG~tl~~~~~----~----------------- 77 (694)
|..-++|.++|.+|+++.-..+|.+. ..-..--|.-+ |++++-+-|+|.||..-++ +
T Consensus 10 r~~~~lkvglal~lvsl~~~~~~~~~-~~~~~~~Wavl-TVvvvfe~tvGatl~KG~nR~lGTl~aG~La~~~~~la~~~ 87 (406)
T PF11744_consen 10 RVIHSLKVGLALTLVSLLYFVGPLYD-GFGQNAMWAVL-TVVVVFEPTVGATLSKGLNRGLGTLLAGILAFGVSWLASLS 87 (406)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhhhhh-hhhhcchHHHh-hhHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45668999999999999988888752 22233334443 4555556688888833111 1
Q ss_pred hh------HHHHHHHHHHHhhccCCCchhhhhhhccceeE--EEEEEEecCCcccccce-echhhhhhhHHHHHHHHHhh
Q 045253 78 GT------TALAVAIAAFFVAFPEGTHLVAKRIALGQIVL--TYVMGFVNGEHSGAVML-PVRVAASTAIGVLACVLALL 148 (694)
Q Consensus 78 ~~------~~~~vals~fvV~lP~~~~lv~KRiAlgq~vi--vYv~~~in~~~t~~i~h-pl~va~~talGv~a~lla~l 148 (694)
|. ....+.+.+++..+...-+.+++|+-.|..+- -|.+.-+=+-+++.+++ ...=...+++|++.|++.-+
T Consensus 88 g~~~~~~~i~~~vFi~~~~atf~r~~P~~k~rydYg~~Vf~LTf~lV~vs~yr~~~~~~~A~~R~~~I~iGv~i~l~vsi 167 (406)
T PF11744_consen 88 GDPGEPIVIGISVFIIGFIATFVRFIPKIKARYDYGGLVFILTFCLVAVSGYRTDEFLMLAVWRLLTIVIGVAICLLVSI 167 (406)
T ss_pred CccchhHHHHHHHHHHHHHHHHHHhchhhhhhhhHHHHHHHHHHHhheeecCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 11122333333335554556788888776521 12211112333444433 12222667999999999999
Q ss_pred cCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHhhh-chhhh---hhhHHHHHHHhhccCccccchhh
Q 045253 149 LPYPRLACYEVKWNCKQLADNASERLRLYVKALCAEDKSTALASISLA-KSLTK---SGTKHIQNIKRYQENMKWEIPFK 224 (694)
Q Consensus 149 lP~PrlA~~~vr~~~k~~~e~~~erLnl~vdafc~~d~~~~~~l~~qa-k~l~~---aa~k~l~~i~~~~~d~~WEr~~~ 224 (694)
+-||.+|..++++....-.+.+.+-+.-.++.|+..+......-..+. |.+.. +.-.--++.+.+....+||+++-
T Consensus 168 ~IfPvwAg~~Lh~~~a~~leklA~~le~~v~~y~~~~~~~~~~~~~~~~~~~~~~yk~vl~Sk~~eesL~~~A~WEP~HG 247 (406)
T PF11744_consen 168 FIFPVWAGEDLHKLTAKNLEKLANSLEGCVEEYFKCSEDEILDYQQESDDPLLQGYKSVLNSKSQEESLANFARWEPPHG 247 (406)
T ss_pred heeechhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhcccccccccccHHHHhhhHHhCCcccHHHHhhhhhhccccc
Confidence 999999999999999999999999999999999886332200000000 00000 00011135667788899999543
Q ss_pred cc--cccCCChhh
Q 045253 225 FL--GSNYVKPVK 235 (694)
Q Consensus 225 ~~--~~~~~~~~~ 235 (694)
.| |.-|++|.|
T Consensus 248 ~f~f~~Pw~~Y~k 260 (406)
T PF11744_consen 248 RFRFRHPWKQYLK 260 (406)
T ss_pred CCccCCcHHHHHH
Confidence 33 333344443
No 15
>PRK10631 p-hydroxybenzoic acid efflux subunit AaeB; Provisional
Probab=97.98 E-value=0.0048 Score=72.37 Aligned_cols=219 Identities=12% Similarity=0.079 Sum_probs=114.6
Q ss_pred chhhHHHHHHHHHHHHHHHHhcCCCCcccHHHHHH--HHHhCC-Ccc------ccchheehhhhhhhc-----ch--hh-
Q 045253 363 FMPAFQCSFSLGLAVLFGLLFSKPNGIWSGLSAAI--SFATAR-EAT------FKRTVYGVLGCFLFE-----KL--LP- 425 (694)
Q Consensus 363 l~~A~K~slAivLA~~lgl~f~~e~gyWA~lt~AI--a~~ag~-~~T------f~GTv~G~l~~~v~~-----~~--~~- 425 (694)
++-|+++.++++++-.+-.+-+|+.|.-+.+.+|| ++.+.. .|. +.|+++|+..+++.. +. .+
T Consensus 353 ~~~glRa~~ai~~~~~fWI~TgW~~Ga~a~~~aAV~~~LfA~~~nP~~~~~~fl~Gtl~a~~~a~l~~f~vLP~i~~~f~ 432 (652)
T PRK10631 353 MINGWRTTLATALGTLFWLWTGWTSGSGAMVMIAVVTSLAMRLPNPRMVAIDFLYGTLAALPLGALYFMVIIPNTQQSML 432 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHH
Confidence 67778888998888888888999999999998888 444443 332 127777666653332 22 12
Q ss_pred HHHHhhhHHHHHHHHHhcCcccccccchhhhhheeEEeeeccC--CCchHHHHHHHHHHHHHHHHHHhhHhhcccCchhH
Q 045253 426 IRFLFLFPWFIFTSFLRHGRMYGQGGGISAVIGAVLILGRKSF--GPPEEFAIARIVETFIGLTCTIIGELLFQSTRAST 503 (694)
Q Consensus 426 l~~l~Lf~W~~~ssfm~~s~~Yg~ag~vaA~~~aiiilg~~~~--~~~~~fAv~Ri~Et~IGI~c~ilVell~~P~ras~ 503 (694)
+-.+++.|-+.+..+......+| +++..+....+++-.|. -++..|.= .=.=.++|++.+.++-.++.|.+...
T Consensus 433 lL~laLap~~~~~g~~~~~~~~~---~lg~~i~f~~~l~l~n~~~~d~~~FlN-~alA~v~Gi~~A~l~f~lirp~~~~r 508 (652)
T PRK10631 433 LLCISLGVLGFFIGIEVQKRRLG---SLGALASTINILVLDNPMTFHFSQFLD-SALGQIVGCFLALIVILLVRDNSRDR 508 (652)
T ss_pred HHHHHHHHHHHHHHHHhcccHHH---HHHHHHHHHHHhccCCCCCcCHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 22333333333333333333455 33332233334333332 12223322 33345789999999999999996655
Q ss_pred HHHHHhhH--HHHHHHhhcCCCCCCCCCchHHHHHHHHhHHHHHHHHH------HHHHHHHHHHhhhhhhcccchhhhhh
Q 045253 504 LAKSQLSK--RTFIREADVEPNFGFLPFHSACYSKLLVSLVKMVHLLH------FCSYSIGFLEQESQKIDKASWKEDVQ 575 (694)
Q Consensus 504 l~r~~l~~--~~~l~eA~~EP~~W~~pF~~~~Y~kvl~s~~rl~~Ll~------~~~~av~~l~~~~~~~~~~~~~~~~~ 575 (694)
..|+=+.+ +.+......+|+- .|... .+.+..-+.++.+.-. .+...+-++.|+.... .-
T Consensus 509 ~~rrL~~~~~~~a~~~~~~~~~~---r~e~~-~~~l~~ql~~L~~~~~~~~~~~~l~~~~~~~~~~~~~~--------~~ 576 (652)
T PRK10631 509 TGRVLLNQFVSAAVSAMTTNVAR---RKENH-LPALYQQLFLLLNKFPGDIPKYRLALTLIIAHQRLRDA--------PI 576 (652)
T ss_pred HHHHHHHHHHHHHHHhhcccchh---hhhhh-HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhhcC--------CC
Confidence 55544443 3344444444443 23222 3333333333322111 1222333333333222 11
Q ss_pred hcchhHHHHHHHhhhhhhhhhh
Q 045253 576 KLDGDVKLVKEMACSSIKCFND 597 (694)
Q Consensus 576 ~~~~~~~~f~~~~~~~~k~~~~ 597 (694)
..+.|+..||..+...+..+.-
T Consensus 577 ~~~~~~~~~~r~~~~~~~~~~~ 598 (652)
T PRK10631 577 PVNEDLSAFHRQLRRTADHVIS 598 (652)
T ss_pred CCcchhhHHHHHHHHHHHHHHH
Confidence 2267787888777777766655
No 16
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=96.98 E-value=0.21 Score=56.09 Aligned_cols=187 Identities=16% Similarity=0.214 Sum_probs=101.5
Q ss_pred chhhHHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCcccc---------c---h---heehhhhhhhc------
Q 045253 363 FMPAFQCSFSLGLAVLFGLLFSKPNGIWSGLSAAISFATAREATFK---------R---T---VYGVLGCFLFE------ 421 (694)
Q Consensus 363 l~~A~K~slAivLA~~lgl~f~~e~gyWA~lt~AIa~~ag~~~Tf~---------G---T---v~G~l~~~v~~------ 421 (694)
+---++..+.+++++++|+. |+.++..++..+-.+.|-+ | + .-.+.-..+++
T Consensus 62 ~~~~~~~~~~~~~g~~~g~~-------~~~l~~~~a~~aR~~~t~a~l~~~~~~~~~~~s~~~~~~~~~~~i~~G~~~~a 134 (459)
T PF10337_consen 62 RGKFLEAMILLLLGVCLGWA-------WGLLAMYIAVAARPHDTQARLQQLQQSAGACTSGPNPAACAQQLIFDGFFYDA 134 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHccCccHHHHHHHHHHhccccCCCChhHHHHHhhcccceecc
Confidence 44557888999999999998 7888877777776441111 0 0 11111122222
Q ss_pred chhhHHHHhhhHHHHHHHHHhcCcccccccchhhhhheeEEeeecc---CCCc---hHHHHHHHHHHHHHHHHHHhhHhh
Q 045253 422 KLLPIRFLFLFPWFIFTSFLRHGRMYGQGGGISAVIGAVLILGRKS---FGPP---EEFAIARIVETFIGLTCTIIGELL 495 (694)
Q Consensus 422 ~~~~l~~l~Lf~W~~~ssfm~~s~~Yg~ag~vaA~~~aiiilg~~~---~~~~---~~fAv~Ri~Et~IGI~c~ilVell 495 (694)
+...+..+.+|+-+.+..+||. +.+......+++.|++-.... .-|. ..++..=+.=..+|+.+.+++.++
T Consensus 135 ~~saV~av~l~~~i~~~~~lRa---~~p~~~~~~I~~~I~~~i~~t~g~~~p~~~~~~l~~~ll~P~~ig~ai~~~vsll 211 (459)
T PF10337_consen 135 RASAVFAVFLFVFIYFHGWLRA---KNPKLNFPVIFGSIFVDIFLTYGPLFPTFFAYTLGKTLLKPFLIGIAIALVVSLL 211 (459)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH---hCcchHHHHHHHHHHHHHHHHhCcCcCcchHHHHHHHHHHHHHHHHHHHHHHhee
Confidence 1123333333333444555653 222233323333333311111 1222 223333344467899999999999
Q ss_pred cccCchhHHHHHHhhH------------HHHH-----------------------------------HHhhcCCCCCCCC
Q 045253 496 FQSTRASTLAKSQLSK------------RTFI-----------------------------------READVEPNFGFLP 528 (694)
Q Consensus 496 ~~P~ras~l~r~~l~~------------~~~l-----------------------------------~eA~~EP~~W~~p 528 (694)
++|.+.+......+.+ ++++ .++..|=.+ -+
T Consensus 212 iFP~sss~~~~~~~~~~l~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~L~~~~~~l~~~~~~l~~~l~~~~~Eis~--gr 289 (459)
T PF10337_consen 212 IFPESSSHVVLKSMEDYLRLLKKALDAQRNFLQSSEPSDEFDAKSLKKLKATKAKLRALYAKLQAALRFLKLEISY--GR 289 (459)
T ss_pred ecCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHee--ec
Confidence 9999887666666655 2222 222222221 35
Q ss_pred CchHHHHHHHHhHHHHHHHHHHHHHHHHHHHhh
Q 045253 529 FHSACYSKLLVSLVKMVHLLHFCSYSIGFLEQE 561 (694)
Q Consensus 529 F~~~~Y~kvl~s~~rl~~Ll~~~~~av~~l~~~ 561 (694)
++.+-|..+...++++..-+.-+.+..+.+...
T Consensus 290 l~~~Dl~~i~~~lr~l~~~~~gL~~~~~~~~~~ 322 (459)
T PF10337_consen 290 LSPDDLKPIFSLLRSLMIPLSGLSSFCDLFQRL 322 (459)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677888888888887777666666655555433
No 17
>PF11168 DUF2955: Protein of unknown function (DUF2955); InterPro: IPR022604 Some members in this group of proteins with unknown function are annotated as membrane proteins. However, this cannot be confirmed.
Probab=94.87 E-value=0.069 Score=51.24 Aligned_cols=125 Identities=15% Similarity=0.161 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCcccc---ch--------heehhhhhhhcchhhHHHHhhhHH
Q 045253 366 AFQCSFSLGLAVLFGLLFSKPNGIWSGLSAAISFATAREATFK---RT--------VYGVLGCFLFEKLLPIRFLFLFPW 434 (694)
Q Consensus 366 A~K~slAivLA~~lgl~f~~e~gyWA~lt~AIa~~ag~~~Tf~---GT--------v~G~l~~~v~~~~~~l~~l~Lf~W 434 (694)
++|.+++..++.+++.+++|++|+-+.+-.++-+...+..+.+ +. ..|.+..-.+.++|....+.++.-
T Consensus 2 ~LRia~g~~l~l~~~~~~~~~~p~~~pvf~~~lL~~~~~~~~~~~~~l~~~~~~~~~~~~ll~~ll~~~P~~~~l~v~l~ 81 (140)
T PF11168_consen 2 ALRIAFGVTLGLFLSKLFGWPLPFFAPVFPAILLGMVPPPPLKMLLQLLLVALLTALEGLLLSGLLQDYPVVMLLLVFLL 81 (140)
T ss_pred eeehhHHHHHHHHHHHHHCCCchHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 5688999999999999999999999999988888555555555 11 123334444456676665555544
Q ss_pred HHHHHHHhcCcccccccchhhhhheeEEeeeccCCCchHHHHHHHHHHHHHHHHHHhhH
Q 045253 435 FIFTSFLRHGRMYGQGGGISAVIGAVLILGRKSFGPPEEFAIARIVETFIGLTCTIIGE 493 (694)
Q Consensus 435 ~~~ssfm~~s~~Yg~ag~vaA~~~aiiilg~~~~~~~~~fAv~Ri~Et~IGI~c~ilVe 493 (694)
...+.+..++.+.+..|.+.-+...++..-.+++ ..-+..++.+...|++.++++-
T Consensus 82 ~~~~f~~~~~~~~~l~~~~~lv~~~ii~~f~~~~---~~~~~~l~~~l~~~~~iav~i~ 137 (140)
T PF11168_consen 82 FFWSFYRMSRGPKFLFGTMLLVGLSIIPVFASYN---TADAEDLILSLVLAILIAVLIA 137 (140)
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHHHHHHhcC---cchHHHHHHHHHHHHHHHHHHH
Confidence 5556666665556666655443333332222222 3355667777777777777654
No 18
>KOG4711 consensus Predicted membrane protein [General function prediction only]
Probab=94.69 E-value=0.004 Score=72.49 Aligned_cols=153 Identities=17% Similarity=0.118 Sum_probs=100.1
Q ss_pred ccccccchhhHHHHHHHHHHHHHHHHhc--C---CCCcccHHHHHHHHHhCCCcccc-------chheehhhhh------
Q 045253 357 KVKSKRFMPAFQCSFSLGLAVLFGLLFS--K---PNGIWSGLSAAISFATAREATFK-------RTVYGVLGCF------ 418 (694)
Q Consensus 357 ~~~~~~l~~A~K~slAivLA~~lgl~f~--~---e~gyWA~lt~AIa~~ag~~~Tf~-------GTv~G~l~~~------ 418 (694)
.-+.+|..||+|.++|+.|.-++-+.=. + .++-|+.+|+.+++--.-++|+. ||+.+-..++
T Consensus 87 ~~dprrviha~KvglaltL~S~~y~~~~~~~~ig~~~~wai~tvvvv~e~svgatl~kglnr~v~tL~ag~l~l~~~~la 166 (625)
T KOG4711|consen 87 KEDPRRVIHAFKVGLALTLVSFLYFMKPLYKGIGVNALWAILTVVVVFEFSVGATLSKGLNRAVGTLSAGGLALGIERLA 166 (625)
T ss_pred CCChhhhhhhhhccchhhhhhheeeccccccccchhhhheeeEEEEEEEeccchHHHHhHHHHHHHhhhhhhhhhhHHHH
Confidence 3566779999999999998866544310 0 13347777766655444456655 6666333332
Q ss_pred -hhcchhhHHHHhhhHHHHH--HHHHh---cCcccccccchhhhhheeEEeeeccCCCchHHHHHHHHHHHHHHHHHHhh
Q 045253 419 -LFEKLLPIRFLFLFPWFIF--TSFLR---HGRMYGQGGGISAVIGAVLILGRKSFGPPEEFAIARIVETFIGLTCTIIG 492 (694)
Q Consensus 419 -v~~~~~~l~~l~Lf~W~~~--ssfm~---~s~~Yg~ag~vaA~~~aiiilg~~~~~~~~~fAv~Ri~Et~IGI~c~ilV 492 (694)
++.......++.+++.+.. ..|++ +-+.|.|.-.+.=.|-+++.|.+...+-....|+.|+..+.+|...-.++
T Consensus 167 ~~~g~~~~~i~~~~~vF~~~~~~ty~~f~p~iK~y~y~~lIf~ltf~l~~vs~~r~~~~~~~a~~Rl~~i~~g~~vclii 246 (625)
T KOG4711|consen 167 EISGKDNESIFIGITVFIAGAKATYSLFFPYIKAYEYGFLIFILTFCLVEVSGYRSDYFLELALQRLLLIVIGGGVCLII 246 (625)
T ss_pred HHhcccchHHHHHHHHHHHHHHHHHHhhchhhhccchhhhHHHHHhhhheecccchhHHHHHHHHHHHHHhhCcceeEEE
Confidence 1112233344444444433 55555 23336666667668888888877766778889999999999999999999
Q ss_pred HhhcccCchhHHHHHHh
Q 045253 493 ELLFQSTRASTLAKSQL 509 (694)
Q Consensus 493 ell~~P~ras~l~r~~l 509 (694)
++++||-.|..-+-.-.
T Consensus 247 s~f~~PiwAgedlh~l~ 263 (625)
T KOG4711|consen 247 SRFIFPIWAGEDLHKLD 263 (625)
T ss_pred EEEEeeccchhhhhhhh
Confidence 99999998864443333
No 19
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=93.83 E-value=0.98 Score=47.58 Aligned_cols=86 Identities=15% Similarity=0.115 Sum_probs=58.1
Q ss_pred hhhHHHHhhhHHHHHHHHHhcCcccccccchhhhhheeEEeeeccCCCchHHHHHHHHHHHHHHHHHHhhHhhcccCchh
Q 045253 423 LLPIRFLFLFPWFIFTSFLRHGRMYGQGGGISAVIGAVLILGRKSFGPPEEFAIARIVETFIGLTCTIIGELLFQSTRAS 502 (694)
Q Consensus 423 ~~~l~~l~Lf~W~~~ssfm~~s~~Yg~ag~vaA~~~aiiilg~~~~~~~~~fAv~Ri~Et~IGI~c~ilVell~~P~ras 502 (694)
.+.+..+++++|..+++++.- ||..++.-++.+.++.+-+....++..-+..+-.=.++|=+.+.+..+++||-++.
T Consensus 22 ~~~l~~~~~~~~~F~~~ml~~---~G~r~~~i~~~~Ll~~v~t~~~~~~~~~~~~~~~l~~~Gglwy~~lsl~~~~l~p~ 98 (284)
T PF12805_consen 22 YPWLLILVLALLTFFFGMLGV---YGPRAATIGFATLLVAVYTMAGPSPGPEALEHALLFLAGGLWYLLLSLLWWPLRPY 98 (284)
T ss_pred ccHHHHHHHHHHHHHHHHHHH---HhhHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 355666777777777777775 77666533322222222122222212266778888999999999999999999998
Q ss_pred HHHHHHhhH
Q 045253 503 TLAKSQLSK 511 (694)
Q Consensus 503 ~l~r~~l~~ 511 (694)
.-.|..+.+
T Consensus 99 r~~rqaLa~ 107 (284)
T PF12805_consen 99 RPVRQALAE 107 (284)
T ss_pred CHHHHHHHH
Confidence 888888887
No 20
>PF10334 DUF2421: Protein of unknown function (DUF2421); InterPro: IPR018820 This domain is found in several uncharacterised proteins and in Brefeldin A-sensitivity protein 4, which is a zinc finger protein containing five transmembrane domains. Brefeldin A-sensitivity protein 4 null mutant exhibits strongly fragmented vacuoles and sensitivity to brefeldin A, a drug which is known to affect intracellular transport [, , ].
Probab=93.17 E-value=0.53 Score=48.34 Aligned_cols=47 Identities=32% Similarity=0.409 Sum_probs=43.4
Q ss_pred HHHHHHhhcCCCCCCCCCchHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 045253 512 RTFIREADVEPNFGFLPFHSACYSKLLVSLVKMVHLLHFCSYSIGFLE 559 (694)
Q Consensus 512 ~~~l~eA~~EP~~W~~pF~~~~Y~kvl~s~~rl~~Ll~~~~~av~~l~ 559 (694)
+.+++-+.-||.+ +-||+.+.|.++++.+.+|+|++..+..+...++
T Consensus 65 ~~~l~~~k~Ep~l-~G~FP~~~Y~~l~~~~~~il~~l~~l~~~~~~l~ 111 (229)
T PF10334_consen 65 RTLLAFAKFEPSL-KGRFPKETYQRLLELCQNILDLLSLLSYVSTRLE 111 (229)
T ss_pred HHHHHHhCcCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 8999999999998 8899999999999999999999999988877763
No 21
>TIGR01667 YCCS_YHJK integral membrane protein, YccS/YhfK family. TMHMM on members of this model shows a consensus of 11 transmembrane helices separated into two clusters, an N-terminal cluster of 6 and a central cluster of 5. This would indicate two non-membrane domains one on each side of the membrane
Probab=90.01 E-value=0.47 Score=56.55 Aligned_cols=50 Identities=18% Similarity=0.147 Sum_probs=47.0
Q ss_pred hhhhHHHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 045253 134 ASTAIGVLACVLALLLPYPRLACYEVKWNCKQLADNASERLRLYVKALCA 183 (694)
Q Consensus 134 ~~talGv~a~lla~llP~PrlA~~~vr~~~k~~~e~~~erLnl~vdafc~ 183 (694)
.-|.+|.+.++++..+-+|.-+.+++++..++..+...+-++.+++.|-.
T Consensus 507 ~DTliG~~iA~~~~~llwP~w~~~~l~~~~~~al~a~~~yl~~il~~~~~ 556 (701)
T TIGR01667 507 IDTLIGCLIAWGAVSYLWPDWQSRLLRKMLHDALEANQRYLRLILSQYPQ 556 (701)
T ss_pred HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 67999999999999999999999999999999999999999999999865
No 22
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=89.84 E-value=9.9 Score=46.05 Aligned_cols=100 Identities=15% Similarity=0.162 Sum_probs=53.3
Q ss_pred HHHhC-CCccccchheehhhhhhhcchhhHHHHhhhHHHHH-HHHHhcCcccccccchhhhhheeEEeeeccCCCchHHH
Q 045253 398 SFATA-REATFKRTVYGVLGCFLFEKLLPIRFLFLFPWFIF-TSFLRHGRMYGQGGGISAVIGAVLILGRKSFGPPEEFA 475 (694)
Q Consensus 398 a~~ag-~~~Tf~GTv~G~l~~~v~~~~~~l~~l~Lf~W~~~-ssfm~~s~~Yg~ag~vaA~~~aiiilg~~~~~~~~~fA 475 (694)
||+.| +.|+-.|++.|.+..+.....+. .+.++...|+ +..+|...++|.+.+- +++.+++ ..+.+...++.
T Consensus 190 a~~gG~~~Gaa~Gv~~Gli~~l~~~~~~~--~~~~~af~GLlaG~fk~~gK~g~~~g~--~l~~~il--~~y~~~~~~~~ 263 (764)
T TIGR02865 190 SYIGGSGAGAAGGVVIGVILGLANNANLY--QIGVFGFAGLLGGIFKELGKIGTGIGY--LVGFLIL--AFYTQGSVAFS 263 (764)
T ss_pred HHhcCchHhHHHHHHHHHHHHhcCccHHH--HHHHHHHHHHHHHhhccCCcceeeHHH--HHHHHHH--HHHhccchhHH
Confidence 44444 23334477777766666554443 3333333555 6778887777766552 2233333 22333232333
Q ss_pred HHHHHHHHHHHHHHHhhHhhcccCchhHHHHHHh
Q 045253 476 IARIVETFIGLTCTIIGELLFQSTRASTLAKSQL 509 (694)
Q Consensus 476 v~Ri~Et~IGI~c~ilVell~~P~ras~l~r~~l 509 (694)
.. +.|+.++.+.|+ +.|++....++..+
T Consensus 264 ~~-~~e~~ia~~lFl-----l~P~~~~~~~~~~~ 291 (764)
T TIGR02865 264 LA-LYEALIATLLFL-----LIPNKIYKKLERYL 291 (764)
T ss_pred HH-HHHHHHHHHHHH-----HhhHHHHHHHHhhC
Confidence 32 789999999884 56765544444333
No 23
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=89.52 E-value=26 Score=42.28 Aligned_cols=143 Identities=13% Similarity=0.022 Sum_probs=74.7
Q ss_pred ccccchhhHHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHhC----CCccccchhe--------ehhhhhhhc---ch
Q 045253 359 KSKRFMPAFQCSFSLGLAVLFGLLFSKPNGIWSGLSAAISFATA----REATFKRTVY--------GVLGCFLFE---KL 423 (694)
Q Consensus 359 ~~~~l~~A~K~slAivLA~~lgl~f~~e~gyWA~lt~AIa~~ag----~~~Tf~GTv~--------G~l~~~v~~---~~ 423 (694)
.+..+..++|..+|+..+.+++++|+.. =.+++.+++.+++ .++.++|=+- +.++.+... ..
T Consensus 4 ~~~~~~~~lri~ia~~~~~~~~~~~~~~---~~~~~l~LG~ia~al~D~d~~~~~R~~~l~~t~~~f~i~sl~v~ll~~~ 80 (704)
T TIGR01666 4 LNAKVIYTIPIFIALNGAAVGIWFFDIS---SQSMPLILGIIAAALVDLDDRLTGRLKNVIFTLICFSIASFSVELLFGK 80 (704)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhCch---hHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3466889999999999998989887622 2344445544433 4555652222 111111111 22
Q ss_pred hhHHHHhhhHHHHHHHHHhcCcccccccc-hhh---hhheeEEeeeccCCCchHHHHHHHHHHHHHHHHHHhhHhhcccC
Q 045253 424 LPIRFLFLFPWFIFTSFLRHGRMYGQGGG-ISA---VIGAVLILGRKSFGPPEEFAIARIVETFIGLTCTIIGELLFQST 499 (694)
Q Consensus 424 ~~l~~l~Lf~W~~~ssfm~~s~~Yg~ag~-vaA---~~~aiiilg~~~~~~~~~fAv~Ri~Et~IGI~c~ilVell~~P~ 499 (694)
|.+-.+.+++-..+.+.+- .||..++ +|. ++++--.+|.. .+ ......-.-..+|=+.+.+..++.|+-
T Consensus 81 p~lf~~~l~~~tf~~~mlg---a~G~Rya~Iaf~tLliaiytmlg~~--~~--~~w~~~pllll~GalwY~llsl~~~~l 153 (704)
T TIGR01666 81 PWLFAVGLTVSTFGFIMLG---AVGQRYATIAFGSLLVALYTMLGYI--EV--NVWFIQPVMLLCGTLWYSVVTLIVHLF 153 (704)
T ss_pred cHHHHHHHHHHHHHHHHHH---HhhhhHHHHHHHHHHHHHHHHhccc--cc--chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332222221111112221 2566443 322 22222233321 11 123445666788999999999987777
Q ss_pred chhHHHHHHhhH
Q 045253 500 RASTLAKSQLSK 511 (694)
Q Consensus 500 ras~l~r~~l~~ 511 (694)
.+..-.|+.+.+
T Consensus 154 ~p~rp~q~~LA~ 165 (704)
T TIGR01666 154 FPNRPVQENLAK 165 (704)
T ss_pred cCCChHHHHHHH
Confidence 776667777776
No 24
>PRK12821 aspartyl/glutamyl-tRNA amidotransferase subunit C-like protein; Provisional
Probab=72.20 E-value=53 Score=37.97 Aligned_cols=31 Identities=39% Similarity=0.509 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHHHHhcCCCCcccHHHHHHH
Q 045253 365 PAFQCSFSLGLAVLFGLLFSKPNGIWSGLSAAIS 398 (694)
Q Consensus 365 ~A~K~slAivLA~~lgl~f~~e~gyWA~lt~AIa 398 (694)
+-+|.++.-+...+.|.+|| |.|+++..+++
T Consensus 91 p~iKIsFgfIpi~l~G~LFG---P~~G~l~g~ls 121 (477)
T PRK12821 91 PGFRVTLELILVKISGLLFG---PIIGIFSAATI 121 (477)
T ss_pred CcEEEehhhHHHHHHHHHhh---hHHHHHHHHHH
Confidence 34566666666677788874 88888888874
No 25
>COG4129 Predicted membrane protein [Function unknown]
Probab=71.60 E-value=14 Score=40.82 Aligned_cols=48 Identities=15% Similarity=0.182 Sum_probs=30.7
Q ss_pred hhhhhHHHHHHHHH-hhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045253 133 AASTAIGVLACVLA-LLLPYPRLACYEVKWNCKQLADNASERLRLYVKA 180 (694)
Q Consensus 133 a~~talGv~a~lla-~llP~PrlA~~~vr~~~k~~~e~~~erLnl~vda 180 (694)
.+.+++|+..+++. ..+|=|....+.-+++...-.+++...+--.++.
T Consensus 130 ~l~~~vG~~~a~lvn~~~~~~~~~~~~~~~kv~~~~~~il~~~~~~l~~ 178 (332)
T COG4129 130 FLLVFVGVGVAFLVNLVMPPPDYELKLYRAKVEAILASILWEVASYLRD 178 (332)
T ss_pred HHHHHHHHHHHHHHhhhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35667777766665 6667777666666666666666666665544444
No 26
>PF10334 DUF2421: Protein of unknown function (DUF2421); InterPro: IPR018820 This domain is found in several uncharacterised proteins and in Brefeldin A-sensitivity protein 4, which is a zinc finger protein containing five transmembrane domains. Brefeldin A-sensitivity protein 4 null mutant exhibits strongly fragmented vacuoles and sensitivity to brefeldin A, a drug which is known to affect intracellular transport [, , ].
Probab=70.93 E-value=25 Score=36.27 Aligned_cols=105 Identities=13% Similarity=0.049 Sum_probs=73.6
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcc-ch--hHHHHHhhhchhhhhhhHHHHHHHhhccCccccch--hh
Q 045253 150 PYPRLACYEVKWNCKQLADNASERLRLYVKALCAED-KS--TALASISLAKSLTKSGTKHIQNIKRYQENMKWEIP--FK 224 (694)
Q Consensus 150 P~PrlA~~~vr~~~k~~~e~~~erLnl~vdafc~~d-~~--~~~~l~~qak~l~~aa~k~l~~i~~~~~d~~WEr~--~~ 224 (694)
|+|.-|.+.+|+..-.....+.+..-.+++.+..+. +. ....-..+.......-...+.+++.+..-++||-. +.
T Consensus 1 P~P~Sar~~vRk~La~~l~~l~~~Y~~v~s~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~l~~~l~~~k~Ep~l~G~ 80 (229)
T PF10334_consen 1 PRPPSARRHVRKTLASTLSELGDLYSLVVSFWSRRLDNPDGHIDAEEDAIRKRFLKLQQSLNSLRTLLAFAKFEPSLKGR 80 (229)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCCCCC
Confidence 999999999999999999999999999999999963 21 11111111112233445677889999999999993 34
Q ss_pred cccccCCChhhhhhhhccccchhHHHHhhc
Q 045253 225 FLGSNYVKPVKKFQYLELPLRGMEMAVTSA 254 (694)
Q Consensus 225 ~~~~~~~~~~~~l~~l~~~LRgMEiAl~s~ 254 (694)
|=+..|.+..+..++|...|-.|-.+.+..
T Consensus 81 FP~~~Y~~l~~~~~~il~~l~~l~~~~~~l 110 (229)
T PF10334_consen 81 FPKETYQRLLELCQNILDLLSLLSYVSTRL 110 (229)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 333556666666777777777776666555
No 27
>PRK06746 peptide chain release factor 2; Provisional
Probab=37.99 E-value=63 Score=35.84 Aligned_cols=32 Identities=3% Similarity=-0.146 Sum_probs=18.7
Q ss_pred hcCCCCCCCCCchHHHHHHHHhHHHHHHHHHHHHH
Q 045253 519 DVEPNFGFLPFHSACYSKLLVSLVKMVHLLHFCSY 553 (694)
Q Consensus 519 ~~EP~~W~~pF~~~~Y~kvl~s~~rl~~Ll~~~~~ 553 (694)
+++|.||..| +.|.++...++++...+..+..
T Consensus 1 ~~~~~fw~d~---~~~~~~~ke~~~l~~~v~~~~~ 32 (326)
T PRK06746 1 MMGAGFWDDQ---QGAQAVINEANALKDMVGKFRQ 32 (326)
T ss_pred CCCCchhcCH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999665 5555555555554444444433
No 28
>smart00845 GatB_Yqey GatB domain. This domain is found in GatB and proteins related to bacterial Yqey. It is about 140 amino acid residues long. This domain is found at the C terminus of GatB which transamidates Glu-tRNA to Gln-tRNA. The function of this domain is uncertain. It does however suggest that Yqey and its relatives have a role in tRNA metabolism.
Probab=35.67 E-value=45 Score=32.18 Aligned_cols=43 Identities=14% Similarity=0.247 Sum_probs=26.6
Q ss_pred CCchhhhHHHHHHHHHHhHHHHHhhhhhhHHHHHhHHHHhhhhhhhhHhhhhhcC
Q 045253 640 DSDENKEKIVINTYLQHLQELDDKIKKVDVEEFKNQIVLSLSALGYCMRSLIIET 694 (694)
Q Consensus 640 ~~~~~~~~~~~~sfl~~~~e~~~~~~~~~e~~~k~~~~~~l~~lgfc~~~~~~et 694 (694)
+|+++++++ +..-++.-.+++.+..+. .-.++||-||.+||+|
T Consensus 88 sd~~el~~~-v~~vi~~~~~~v~~~~~g-----------~~k~~~~l~G~vMk~~ 130 (147)
T smart00845 88 SDEGELEAI-VDEVIAENPKAVEDYRAG-----------KKKALGFLVGQVMKAT 130 (147)
T ss_pred CCHHHHHHH-HHHHHHHCHHHHHHHHCC-----------HHHHHHHHHHHHHHHh
Confidence 356688888 665555544444433211 1235899999999985
No 29
>PRK10921 twin-arginine protein translocation system subunit TatC; Provisional
Probab=33.73 E-value=60 Score=34.52 Aligned_cols=119 Identities=18% Similarity=0.211 Sum_probs=60.4
Q ss_pred cccccchhhHHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHhCCCc-----ccc-----chheehhhhhhh-cchhhH
Q 045253 358 VKSKRFMPAFQCSFSLGLAVLFGLLFSKPNGIWSGLSAAISFATAREA-----TFK-----RTVYGVLGCFLF-EKLLPI 426 (694)
Q Consensus 358 ~~~~~l~~A~K~slAivLA~~lgl~f~~e~gyWA~lt~AIa~~ag~~~-----Tf~-----GTv~G~l~~~v~-~~~~~l 426 (694)
|.++| +...|...+..+-.++|.. ++||-.+|.++.|..+-++ .++ +.+..++.++-. -+.|.+
T Consensus 100 y~~Er-r~~~~~~~~s~~LF~~G~~----f~y~~vlP~~~~Fl~~f~~~~~~~~~~i~~Y~~fv~~~~l~fGl~FelPli 174 (258)
T PRK10921 100 YKHER-RLVVPLLVSSSLLFYIGMA----FAYFVVFPLAFGFLAKTAPEGVQVSTDIASYLSFVMALFMAFGVSFEVPVA 174 (258)
T ss_pred CHHHH-HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44443 2445555555555666666 6799999999987766321 111 222211111100 022332
Q ss_pred HHHhhhHHHHH--HHHHhcCcccccccchhhhhheeEEeeeccCCCchHHHHHHHHHHHHHHHHHHhhHhhcc
Q 045253 427 RFLFLFPWFIF--TSFLRHGRMYGQGGGISAVIGAVLILGRKSFGPPEEFAIARIVETFIGLTCTIIGELLFQ 497 (694)
Q Consensus 427 ~~l~Lf~W~~~--ssfm~~s~~Yg~ag~vaA~~~aiiilg~~~~~~~~~fAv~Ri~Et~IGI~c~ilVell~~ 497 (694)
. .++...++ ..++++.|+|-+.+. .++||++- | ++. ++|+.+++...++-|+-++
T Consensus 175 ~--~~L~~~giv~~~~l~~~Rr~~~v~~--~iiaAiiT-------P-pD~----isq~llaiPl~lLYEisI~ 231 (258)
T PRK10921 175 I--VLLCWMGVTTPEDLRKKRPYVLVGA--FVVGMLLT-------P-PDV----FSQTLLAIPMYCLFEIGVF 231 (258)
T ss_pred H--HHHHHcCCCCHHHHHhcCcHHhHHH--HHHHHHcC-------C-CcH----HHHHHHHHHHHHHHHHHHH
Confidence 2 22333444 566777777766664 22333332 2 222 4667777777776666654
No 30
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=31.42 E-value=2.8e+02 Score=23.72 Aligned_cols=47 Identities=19% Similarity=0.119 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 045253 136 TAIGVLACVLALLLPYPRLACYEVKWNCKQLADNASERLRLYVKALCA 183 (694)
Q Consensus 136 talGv~a~lla~llP~PrlA~~~vr~~~k~~~e~~~erLnl~vdafc~ 183 (694)
.++|+++-.++.+|--|+ .-+|+|++.+..++++.+.++-+.+..-.
T Consensus 5 ~l~Ga~~Ga~~glL~aP~-sG~e~R~~l~~~~~~~~~~~~~~~~~~~~ 51 (74)
T PF12732_consen 5 FLAGAAAGAAAGLLFAPK-SGKETREKLKDKAEDLKDKAKDLYEEAKE 51 (74)
T ss_pred HHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666665555563 46889999999999888887766655443
No 31
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=31.27 E-value=6.9e+02 Score=28.89 Aligned_cols=24 Identities=17% Similarity=0.380 Sum_probs=18.7
Q ss_pred CchhhhHHHHHHHHHHhHHHHHhhh
Q 045253 641 SDENKEKIVINTYLQHLQELDDKIK 665 (694)
Q Consensus 641 ~~~~~~~~~~~sfl~~~~e~~~~~~ 665 (694)
|.||+|=. ++.|.++..+.++|+.
T Consensus 298 d~eElEML-LEaYf~qiD~~~nk~~ 321 (414)
T KOG2662|consen 298 DVEELEML-LEAYFMQIDSTLNKLE 321 (414)
T ss_pred cHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 44555544 8999999999999887
No 32
>PF11345 DUF3147: Protein of unknown function (DUF3147); InterPro: IPR021493 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently no function is known.
Probab=29.80 E-value=1e+02 Score=28.89 Aligned_cols=71 Identities=20% Similarity=0.369 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHhcCC--CCcccHHHHHH--HHH---hCCCcccc-----chheehhhhhhhc-------c----hhhH
Q 045253 370 SFSLGLAVLFGLLFSKP--NGIWSGLSAAI--SFA---TAREATFK-----RTVYGVLGCFLFE-------K----LLPI 426 (694)
Q Consensus 370 slAivLA~~lgl~f~~e--~gyWA~lt~AI--a~~---ag~~~Tf~-----GTv~G~l~~~v~~-------~----~~~l 426 (694)
++|+++++.++-.+.++ -|.-|++|+.. ++. .+++++.. |+++|...+.++. + .+.-
T Consensus 9 G~av~~~~ii~~~~~~k~~GGifAA~PaV~lasl~~~~~~~~~~~a~~~s~Ga~~G~~~~i~~~l~~~~~l~~~~~~~~~ 88 (108)
T PF11345_consen 9 GLAVVAAYIISRKLPPKSFGGIFAAFPAVFLASLLILGIQHGGKQAAHFSRGAVFGMIGTIICVLVVWFLLKASHGWLLS 88 (108)
T ss_pred cHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHhHhHHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence 57888889999887776 56777777554 111 11233222 8888877664322 1 2233
Q ss_pred HHHhhhHHHHHHHH
Q 045253 427 RFLFLFPWFIFTSF 440 (694)
Q Consensus 427 ~~l~Lf~W~~~ssf 440 (694)
..+.++.|.+.+..
T Consensus 89 ~~~~~~~W~v~a~~ 102 (108)
T PF11345_consen 89 IILGLIVWFVVAVV 102 (108)
T ss_pred HHHHHHHHHHHHHH
Confidence 47778888887644
No 33
>PF10337 DUF2422: Protein of unknown function (DUF2422); InterPro: IPR018823 This domain is found in proteins conserved in fungi. Their function is not known. This entry represents the N-terminal half of some member proteins which contain IPR018820 from INTERPRO at their C terminus.
Probab=29.09 E-value=1.2e+02 Score=34.46 Aligned_cols=57 Identities=14% Similarity=0.118 Sum_probs=46.3
Q ss_pred chhhhhhhHHHHHHHHHhhcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Q 045253 130 VRVAASTAIGVLACVLALLLPYPRLACYEVKWNCKQLADNASERLRLYVKALCAEDK 186 (694)
Q Consensus 130 l~va~~talGv~a~lla~llP~PrlA~~~vr~~~k~~~e~~~erLnl~vdafc~~d~ 186 (694)
..+....++|+..+++.-++=||......+.+....+.+-+.+.++.-.+-+-..+.
T Consensus 192 ~~ll~P~~ig~ai~~~vslliFP~sss~~~~~~~~~~l~~l~~~l~~~~~~l~~~~~ 248 (459)
T PF10337_consen 192 KTLLKPFLIGIAIALVVSLLIFPESSSHVVLKSMEDYLRLLKKALDAQRNFLQSSEP 248 (459)
T ss_pred HHHHHHHHHHHHHHHHHheeecCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 345577778888888887777888899999999999999999999998887766644
No 34
>COG0811 TolQ Biopolymer transport proteins [Intracellular trafficking and secretion]
Probab=28.88 E-value=1e+02 Score=31.83 Aligned_cols=82 Identities=20% Similarity=0.231 Sum_probs=57.8
Q ss_pred hhHHHHHHHHHHHhh-ccCCCchhhhhhhccceeEEEEEEEecCCcccccceechhh-hhhhHHHHHHHHHhhcCchhhh
Q 045253 78 GTTALAVAIAAFFVA-FPEGTHLVAKRIALGQIVLTYVMGFVNGEHSGAVMLPVRVA-ASTAIGVLACVLALLLPYPRLA 155 (694)
Q Consensus 78 ~~~~~~vals~fvV~-lP~~~~lv~KRiAlgq~vivYv~~~in~~~t~~i~hpl~va-~~talGv~a~lla~llP~PrlA 155 (694)
+.++|.+-|.--|++ .|.+ +++|+. ++.+...+..++..| .+||+|.++++.|++ +
T Consensus 126 ~s~aP~lGL~GTV~GIm~aF-------~~i~~~---------~~~~~a~vA~GIseAL~aTA~GL~vAIPAvi------~ 183 (216)
T COG0811 126 GSIAPFLGLLGTVWGIMPAF-------IGIGAG---------GGADLAVVAPGISEALIATAIGLFVAIPAVV------A 183 (216)
T ss_pred HHhhhHHHHHHHHHHHHHHH-------HHHhcc---------CCCCHHHHHhhHHHHHHHHHHHHHHHHHHHH------H
Confidence 446777777777776 5542 233322 345677899989999 999999999999986 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045253 156 CYEVKWNCKQLADNASERLRLYVKAL 181 (694)
Q Consensus 156 ~~~vr~~~k~~~e~~~erLnl~vdaf 181 (694)
++-.++....+..++.+-.+-+.+.|
T Consensus 184 yn~l~r~~~~~~~~~e~~~~~l~~~~ 209 (216)
T COG0811 184 YNVLRRKVEELLAKLEDFAEELELIL 209 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77778887777777666655554443
No 35
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=27.77 E-value=1.3e+02 Score=33.73 Aligned_cols=37 Identities=8% Similarity=0.004 Sum_probs=22.8
Q ss_pred HHHHHHhhcCCCCCCCCCchHHHHHHHHhHHHHHHHHHHH
Q 045253 512 RTFIREADVEPNFGFLPFHSACYSKLLVSLVKMVHLLHFC 551 (694)
Q Consensus 512 ~~~l~eA~~EP~~W~~pF~~~~Y~kvl~s~~rl~~Ll~~~ 551 (694)
.+.+.+...+|+||-.| +.+.++....+++-..+..+
T Consensus 15 ~~~le~~~~~~~~w~d~---~~~~~~~~e~~~L~~~v~~~ 51 (359)
T PRK00591 15 YEELEALLSDPEVISDQ---KRFRKLSKEYAELEPIVEAY 51 (359)
T ss_pred HHHHHHHhcCCCcccCH---HHHHHHHHHHHHHHHHHHHH
Confidence 45677788999999554 55555554444444444443
No 36
>PRK05589 peptide chain release factor 2; Provisional
Probab=27.38 E-value=1.5e+02 Score=33.02 Aligned_cols=29 Identities=17% Similarity=-0.035 Sum_probs=15.9
Q ss_pred cCCCCCCCCCchHHHHHHHHhHHHHHHHHHHH
Q 045253 520 VEPNFGFLPFHSACYSKLLVSLVKMVHLLHFC 551 (694)
Q Consensus 520 ~EP~~W~~pF~~~~Y~kvl~s~~rl~~Ll~~~ 551 (694)
.+|++|..| +.+.++..-++++-..+..+
T Consensus 2 ~~p~~w~d~---~~~~~~~ke~~~l~~~v~~~ 30 (325)
T PRK05589 2 QEPNFWNDI---KEAQEITSEEKYLKDKLDKY 30 (325)
T ss_pred CCchhhcCH---HHHHHHHHHHHHHHHHHHHH
Confidence 579999665 44555544444444433333
No 37
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=27.01 E-value=1.6e+02 Score=33.26 Aligned_cols=37 Identities=14% Similarity=0.029 Sum_probs=21.9
Q ss_pred HHHHHHhhcCCCCCCCCCchHHHHHHHHhHHHHHHHHHHH
Q 045253 512 RTFIREADVEPNFGFLPFHSACYSKLLVSLVKMVHLLHFC 551 (694)
Q Consensus 512 ~~~l~eA~~EP~~W~~pF~~~~Y~kvl~s~~rl~~Ll~~~ 551 (694)
.+-+.+...+|++|..| +.|.++..-++++..++..+
T Consensus 32 ~~~l~~~l~~p~~~~d~---~~~~~l~ke~~~L~~iv~~~ 68 (367)
T PRK00578 32 LEELEAEAEDPDFWNDQ---ERAQKVTKELSSLKAKLDTL 68 (367)
T ss_pred HHHHHHHhcCCccccCH---HHHHHHHHHHHHHHHHHHHH
Confidence 34556677899999766 45555554444444444433
No 38
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=24.42 E-value=1.7e+02 Score=32.93 Aligned_cols=40 Identities=13% Similarity=-0.100 Sum_probs=21.4
Q ss_pred HHHHHHhhcCCCCCCCCCchHHHHHHHHhHHHHHHHHHHH
Q 045253 512 RTFIREADVEPNFGFLPFHSACYSKLLVSLVKMVHLLHFC 551 (694)
Q Consensus 512 ~~~l~eA~~EP~~W~~pF~~~~Y~kvl~s~~rl~~Ll~~~ 551 (694)
-+-+.+....|+||..|=......|-+..+.++++.+.-+
T Consensus 16 ~~~le~~~~~p~~w~d~~~~~~~~k~~~~l~~~v~~~~~~ 55 (360)
T TIGR00019 16 YEELEALLSDPEVISDQDKLRKLSKEYSQLEEIVDCYREY 55 (360)
T ss_pred HHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677789999966543333333334444444443333
No 39
>PF02637 GatB_Yqey: GatB domain; InterPro: IPR018027 The GatB domain, the function of which is uncertain, is associated with aspartyl/glutamyl amidotransferase subunit B and glutamyl amidotransferase subunit E. These are involved in the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln). ; GO: 0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor; PDB: 2D6F_D 3H0M_H 3H0R_K 3H0L_K 3KFU_F 3AL0_B 3IP4_B 2DF4_B 2G5I_B 2F2A_B ....
Probab=24.34 E-value=64 Score=30.90 Aligned_cols=43 Identities=14% Similarity=0.283 Sum_probs=30.0
Q ss_pred CCchhhhHHHHHHHHHHhHHHHHhhhhhhHHHHHhHHHHhhhhhhhhHhhhhhcC
Q 045253 640 DSDENKEKIVINTYLQHLQELDDKIKKVDVEEFKNQIVLSLSALGYCMRSLIIET 694 (694)
Q Consensus 640 ~~~~~~~~~~~~sfl~~~~e~~~~~~~~~e~~~k~~~~~~l~~lgfc~~~~~~et 694 (694)
+|+++++++ +..-++.-.+++++..+-.+ ..+||=||.+||+|
T Consensus 89 ~d~~el~~~-v~~vi~~n~~~v~~~~~Gk~-----------k~~~~LvGqvMk~t 131 (148)
T PF02637_consen 89 SDEEELEAL-VEEVIAENPKEVEDYRNGKK-----------KAIGFLVGQVMKET 131 (148)
T ss_dssp --CCHHHHH-HHHHHHC-HHHHHHHCTT-T-----------TCCHHHHHHHHHCT
T ss_pred CCHHHHHHH-HHHHHHHCHHHHHHHHcChH-----------HHHHHHHHHHHHHc
Confidence 356889998 77777777777776653211 57899999999986
No 40
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=23.80 E-value=1.8e+02 Score=32.81 Aligned_cols=37 Identities=11% Similarity=0.012 Sum_probs=22.3
Q ss_pred HHHHHHhhcCCCCCCCCCchHHHHHHHHhHHHHHHHHHHH
Q 045253 512 RTFIREADVEPNFGFLPFHSACYSKLLVSLVKMVHLLHFC 551 (694)
Q Consensus 512 ~~~l~eA~~EP~~W~~pF~~~~Y~kvl~s~~rl~~Ll~~~ 551 (694)
-+-+.+...+|++|..| +.|.++...++++...+..+
T Consensus 32 ~~~le~~~~~p~~w~d~---~~~~~~~ke~~~l~~~v~~~ 68 (364)
T TIGR00020 32 LEELEKEMEDPNFWNDQ---ERAQAVIKERSSLEAVLDTL 68 (364)
T ss_pred HHHHHHHhcCCccccCH---HHHHHHHHHHHHHHHHHHHH
Confidence 34455667899999776 55655555444444444443
No 41
>PTZ00233 variable surface protein Vir18; Provisional
Probab=22.30 E-value=34 Score=39.94 Aligned_cols=28 Identities=39% Similarity=0.802 Sum_probs=25.5
Q ss_pred hHHHHHHHHHHHHHHHHhcCCCCcccHHH
Q 045253 366 AFQCSFSLGLAVLFGLLFSKPNGIWSGLS 394 (694)
Q Consensus 366 A~K~slAivLA~~lgl~f~~e~gyWA~lt 394 (694)
=||+|.=|||+++|||+| +-+|-|-+||
T Consensus 435 iIktSaPmGIvLLLGLLF-KyTPLWRvLT 462 (509)
T PTZ00233 435 IIKTSMPIGIALLLGLLF-KYTPLWRVLT 462 (509)
T ss_pred eeecccchhHHHHHHHhh-ccchhHHhhh
Confidence 579999999999999998 4799999997
No 42
>PRK14417 membrane protein; Provisional
Probab=21.99 E-value=2.7e+02 Score=29.68 Aligned_cols=136 Identities=14% Similarity=0.102 Sum_probs=67.5
Q ss_pred chhhHHHHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHhC---------CCccccchheehhhhhhhcchhhHHHHhhhH
Q 045253 363 FMPAFQCSFSLGLAVLFGLLFSKPNGIWSGLSAAISFATA---------REATFKRTVYGVLGCFLFEKLLPIRFLFLFP 433 (694)
Q Consensus 363 l~~A~K~slAivLA~~lgl~f~~e~gyWA~lt~AIa~~ag---------~~~Tf~GTv~G~l~~~v~~~~~~l~~l~Lf~ 433 (694)
+...+|..+++.++..+ + .+.|....++++.+.| ++|.=..|-.|++.++ . |....+.+..
T Consensus 60 l~D~lKG~laV~la~~l----~--~~~~~~~~~glaaVlGH~fpifl~FKGGKGVAt~~Gvll~l--~--p~~~li~l~~ 129 (232)
T PRK14417 60 VFDVSKGALMILLAGWL----G--LELWQQIVVGLATIAGHNWPVFLRFNGGRGIATSLGVALVM--A--PVPALIALST 129 (232)
T ss_pred HHHHHHHHHHHHHHHHh----C--cchHHHHHHHHHHHHhcCChhhhCCcChhHHHHHHHHHHHH--h--HHHHHHHHHH
Confidence 56888999888888654 2 2345444556666666 1221114555654332 2 2233334444
Q ss_pred HHHHHHHHhcCcccccccchhhhhheeEEe---ee-ccCCCchHHHHHHHHHHHHHHHHHHhhHhhcccCc--hhHHHHH
Q 045253 434 WFIFTSFLRHGRMYGQGGGISAVIGAVLIL---GR-KSFGPPEEFAIARIVETFIGLTCTIIGELLFQSTR--ASTLAKS 507 (694)
Q Consensus 434 W~~~ssfm~~s~~Yg~ag~vaA~~~aiiil---g~-~~~~~~~~fAv~Ri~Et~IGI~c~ilVell~~P~r--as~l~r~ 507 (694)
|+. .++++ |-..|.+.++...-+.. ++ ...+.+..+... ++.+.+.++..-+.-|++ +.+..+.
T Consensus 130 ~i~--~~itr---~vSL~Si~~~~~~p~~~~~~~g~~~~~~~~~~~~~-----~~~i~~lvi~rhl~~~~~~~~~~~~~~ 199 (232)
T PRK14417 130 ALT--FGFFK---KMAPGVFLGVGALPVMSGYFHGFFGVQEPQTVTWG-----FIGIFLIMIVRRLMAPDSEYSSTVSKA 199 (232)
T ss_pred HHH--HHHHH---HhhHHHHHHHHHHHHHHHHHHHHHhhcCchHHHHH-----HHHHHHHHHHHHhcCchhhcccCchHH
Confidence 422 33333 43344433322221111 11 112222222111 578888899999999996 3555555
Q ss_pred HhhHHHHHHHh
Q 045253 508 QLSKRTFIREA 518 (694)
Q Consensus 508 ~l~~~~~l~eA 518 (694)
|+-.+++..+=
T Consensus 200 ~~~~~r~~~dr 210 (232)
T PRK14417 200 ELVFNRLFLDR 210 (232)
T ss_pred HHHHHHHHhcC
Confidence 55555555443
No 43
>PRK07342 peptide chain release factor 2; Provisional
Probab=21.01 E-value=2e+02 Score=32.28 Aligned_cols=31 Identities=10% Similarity=-0.021 Sum_probs=18.5
Q ss_pred hcCCCCCCCCCchHHHHHHHHhHHHHHHHHHHHH
Q 045253 519 DVEPNFGFLPFHSACYSKLLVSLVKMVHLLHFCS 552 (694)
Q Consensus 519 ~~EP~~W~~pF~~~~Y~kvl~s~~rl~~Ll~~~~ 552 (694)
...|+||..| +.+.++..-++++-+.+..+-
T Consensus 3 ~~~p~~w~d~---~~~~~~~ke~~~l~~~v~~~~ 33 (339)
T PRK07342 3 AEDPSLWNDA---QEAQKLMRERQQLDDSINGIN 33 (339)
T ss_pred ccCcchhcCH---HHHHHHHHHHHHHHHHHHHHH
Confidence 3579999655 555666555555555554443
Done!