Query 045253
Match_columns 694
No_of_seqs 85 out of 87
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 20:04:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045253.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045253hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d5a_X RF1, peptide chain rele 37.1 1.6E+02 0.0054 31.7 10.2 83 512-614 12-94 (354)
2 1ux5_A BNI1 protein; structura 36.4 1.1E+02 0.0037 32.7 9.0 75 576-666 277-351 (411)
3 2zy9_A Mg2+ transporter MGTE; 28.3 64 0.0022 35.1 5.7 31 389-422 407-437 (473)
4 1v9d_A Diaphanous protein homo 25.7 1E+02 0.0035 32.1 6.4 23 642-665 243-265 (340)
5 2j1d_G DAAM1, disheveled-assoc 25.4 1E+02 0.0036 33.8 6.7 70 576-665 278-348 (483)
6 3rkg_A Magnesium transporter M 24.4 5.8E+02 0.02 26.0 11.8 24 641-665 214-237 (261)
7 3obv_E Protein diaphanous homo 18.9 2E+02 0.007 31.4 7.3 69 576-665 267-336 (457)
8 3bbp_D GRIP and coiled-coil do 15.5 1.3E+02 0.0043 25.5 3.5 27 517-543 3-29 (71)
9 2lq4_p Lysophosphatidic acid r 15.3 75 0.0026 26.5 2.1 21 603-625 20-40 (80)
10 3hd7_A Vesicle-associated memb 13.1 2.1E+02 0.0072 24.6 4.5 36 186-221 32-67 (91)
No 1
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=37.07 E-value=1.6e+02 Score=31.70 Aligned_cols=83 Identities=20% Similarity=0.143 Sum_probs=43.5
Q ss_pred HHHHHHhhcCCCCCCCCCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhhhhhcchhHHHHHHHhhhh
Q 045253 512 RTFIREADVEPNFGFLPFHSACYSKLLVSLVKMVHLLHFCSYSIGFLEQESQKIDKASWKEDVQKLDGDVKLVKEMACSS 591 (694)
Q Consensus 512 ~~~l~eA~~EP~~W~~pF~~~~Y~kvl~s~~rl~~Ll~~~~~av~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 591 (694)
.+-+.+...+|++|.. .+.|.++..-.++|-..+..+-.....++.... .+++.. |.| +++++..-
T Consensus 12 ~~el~~~~~~p~~~~d---~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~------~~el~~--D~e---~~~~a~~e 77 (354)
T 3d5a_X 12 YRELEALLSDPEVLKD---KGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQ------AESLLD--DPE---LKEMAKAE 77 (354)
T ss_dssp HHHHHHHTTSTTTTSC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHTSTT--CHH---HHHHHHHH
T ss_pred HHHHHHHhcCCchhhC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHhc--CHH---HHHHHHHH
Confidence 3445666789999955 566666665555555555444333333322210 112221 333 44555555
Q ss_pred hhhhhhhHhhhhhHHHHHHHhcc
Q 045253 592 IKCFNDAITTIKSLAILEKKLGR 614 (694)
Q Consensus 592 ~k~~~~~i~~~ks~~~l~~~~~~ 614 (694)
++.+++ -+..||++++.
T Consensus 78 ~~~l~~------~~~~le~~l~~ 94 (354)
T 3d5a_X 78 REALLA------RKEALEKELER 94 (354)
T ss_dssp HHHHHH------HHHHHHHHHHH
T ss_pred HHHHHH------HHHHHHHHHHH
Confidence 555555 55667776653
No 2
>1ux5_A BNI1 protein; structural protein, FH2 actin cytoskeleton; 2.5A {Saccharomyces cerevisiae} SCOP: a.207.1.1 PDB: 1y64_B* 1ux4_A
Probab=36.36 E-value=1.1e+02 Score=32.69 Aligned_cols=75 Identities=13% Similarity=0.087 Sum_probs=42.2
Q ss_pred hcchhHHHHHHHhhhhhhhhhhhHhhhhhHHHHHHHhccccCCccccccCCCCCCCccccCCCCCCchhhhHHHHHHHHH
Q 045253 576 KLDGDVKLVKEMACSSIKCFNDAITTIKSLAILEKKLGRKTFNVFRDIECGNSPIGLCVPNGILDSDENKEKIVINTYLQ 655 (694)
Q Consensus 576 ~~~~~~~~f~~~~~~~~k~~~~~i~~~ks~~~l~~~~~~~~~~~~~DlE~g~~~~~~~~~~~~~~~~~~~~~~~~~sfl~ 655 (694)
.+..|+.++.....-+++.++. .+..|++.+++ +-.+++.|+-+...- . .++|...+. +..|++
T Consensus 277 ~f~~eL~~v~~Aakv~~~~l~~------d~~~L~~~l~~----v~~~l~~~~~s~~~~----~-~~~d~f~~~-~~~fl~ 340 (411)
T 1ux5_A 277 DFLSELEPVLDVVKVSIEQLVN------DCKDFSQSIVN----VERSVEIGNLSDSSK----F-HPLDKVLIK-TLPVLP 340 (411)
T ss_dssp GHHHHTHHHHHHTTCCHHHHHH------HHHHHHHHHHH----HHHHHHHSTTTCTTS----S-CTTCCHHHH-HHHHHH
T ss_pred cccchhhhHHHHHCCCHHHHHH------HHHHHHHHHHH----HHHHHHhccCCcccc----c-CcccHHHHH-HHHHHH
Confidence 4467777777766666666655 33444444432 112344444221110 0 124455555 789999
Q ss_pred HhHHHHHhhhh
Q 045253 656 HLQELDDKIKK 666 (694)
Q Consensus 656 ~~~e~~~~~~~ 666 (694)
++++-++.+.+
T Consensus 341 ~a~~~~~~l~~ 351 (411)
T 1ux5_A 341 EARKKGDLLED 351 (411)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99988887773
No 3
>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A
Probab=28.28 E-value=64 Score=35.10 Aligned_cols=31 Identities=16% Similarity=0.165 Sum_probs=24.8
Q ss_pred cccHHHHHHHHHhCCCccccchheehhhhhhhcc
Q 045253 389 IWSGLSAAISFATAREATFKRTVYGVLGCFLFEK 422 (694)
Q Consensus 389 yWA~lt~AIa~~ag~~~Tf~GTv~G~l~~~v~~~ 422 (694)
.+-++.++++|... ...++++|++.++++.|
T Consensus 407 ~~~~~~v~~a~~~~---~~~a~~~g~~~p~~~~~ 437 (473)
T 2zy9_A 407 PLLLPVVGVSLVLI---VFFANLVGAMLPFLLRR 437 (473)
T ss_dssp TTSHHHHHHHHHHH---HHHHHHHHTTHHHHHHH
T ss_pred hHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 56788888888776 45588999999999885
No 4
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A {Mus musculus} SCOP: a.207.1.1
Probab=25.74 E-value=1e+02 Score=32.09 Aligned_cols=23 Identities=13% Similarity=0.332 Sum_probs=17.6
Q ss_pred chhhhHHHHHHHHHHhHHHHHhhh
Q 045253 642 DENKEKIVINTYLQHLQELDDKIK 665 (694)
Q Consensus 642 ~~~~~~~~~~sfl~~~~e~~~~~~ 665 (694)
+|...+. +..|++++++-++++.
T Consensus 243 ~d~f~~~-m~~Fl~~a~~~~~~l~ 265 (340)
T 1v9d_A 243 KDKFVEK-MTSFVKDAQEQYNKLR 265 (340)
T ss_dssp SCCHHHH-HHHHHHHHHHHHHHHH
T ss_pred hHHHHHH-HHHHHHHHHHHHHHHH
Confidence 3444455 7999999999888877
No 5
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin assembly, protein binding; 2.55A {Homo sapiens} PDB: 2z6e_A
Probab=25.40 E-value=1e+02 Score=33.75 Aligned_cols=70 Identities=11% Similarity=0.200 Sum_probs=39.8
Q ss_pred hcchhHHHHHHHhhhhhhhhhhhHhhh-hhHHHHHHHhccccCCccccccCCCCCCCccccCCCCCCchhhhHHHHHHHH
Q 045253 576 KLDGDVKLVKEMACSSIKCFNDAITTI-KSLAILEKKLGRKTFNVFRDIECGNSPIGLCVPNGILDSDENKEKIVINTYL 654 (694)
Q Consensus 576 ~~~~~~~~f~~~~~~~~k~~~~~i~~~-ks~~~l~~~~~~~~~~~~~DlE~g~~~~~~~~~~~~~~~~~~~~~~~~~sfl 654 (694)
.+..|+.++...-.-+++.++.-+..+ +.+..++++++. ++... . +.+|...+. +..|+
T Consensus 278 ~f~~eL~~v~~Askv~~~~l~~~~~~L~~~l~~v~~~l~~-----------~~~~~--~------~~~d~f~~~-m~~Fl 337 (483)
T 2j1d_G 278 NLNEELRDIPQAAKVNMTELDKEISTLRSGLKAVETELEY-----------QKSQP--P------QPGDKFVSV-VSQFI 337 (483)
T ss_dssp GHHHHTTTHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHH-----------HHTSC--C------CTTCCHHHH-HHHHH
T ss_pred chHHHHhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH-----------hhccC--C------CchhhHHHH-HHHHH
Confidence 455677777766666666665523222 234445555532 22110 1 124445555 89999
Q ss_pred HHhHHHHHhhh
Q 045253 655 QHLQELDDKIK 665 (694)
Q Consensus 655 ~~~~e~~~~~~ 665 (694)
+++++-++.+.
T Consensus 338 ~~a~~~~~~L~ 348 (483)
T 2j1d_G 338 TVASFSFSDVE 348 (483)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99998888777
No 6
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=24.40 E-value=5.8e+02 Score=26.03 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=20.3
Q ss_pred CchhhhHHHHHHHHHHhHHHHHhhh
Q 045253 641 SDENKEKIVINTYLQHLQELDDKIK 665 (694)
Q Consensus 641 ~~~~~~~~~~~sfl~~~~e~~~~~~ 665 (694)
+-||+|-. .++|+|+..+++.++.
T Consensus 214 d~eElEmL-LE~Y~~q~d~~~~~~~ 237 (261)
T 3rkg_A 214 NFSDLEML-IETYYTQCDEYVQQSE 237 (261)
T ss_dssp CCHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred chHHHHHH-HHHHHHHHHHHHHHHH
Confidence 46676666 9999999999999887
No 7
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus} PDB: 3o4x_E 2bap_D
Probab=18.87 E-value=2e+02 Score=31.37 Aligned_cols=69 Identities=14% Similarity=0.277 Sum_probs=37.9
Q ss_pred hcchhHHHHHHHhhhhhhhhhhhHhhh-hhHHHHHHHhccccCCccccccCCCCCCCccccCCCCCCchhhhHHHHHHHH
Q 045253 576 KLDGDVKLVKEMACSSIKCFNDAITTI-KSLAILEKKLGRKTFNVFRDIECGNSPIGLCVPNGILDSDENKEKIVINTYL 654 (694)
Q Consensus 576 ~~~~~~~~f~~~~~~~~k~~~~~i~~~-ks~~~l~~~~~~~~~~~~~DlE~g~~~~~~~~~~~~~~~~~~~~~~~~~sfl 654 (694)
.+..|+.++...-.-+++.++.-+..+ +.+..+++++ +....+ . +++|...+. +..|+
T Consensus 267 ~f~~eL~~v~~Aakvs~~~l~~dl~~L~~~l~~v~~~l-----------~~~~~~--~-------~~~d~f~~~-m~~Fl 325 (457)
T 3obv_E 267 KFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDV-----------QNFPAA--T-------DEKDKFVEK-MTSFV 325 (457)
T ss_dssp GHHHHCTTHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH-----------HSCCCC--S-------STTCCHHHH-HHHHH
T ss_pred CChhhhhhHHhhccCCHHHHHHHHHHHHHHHHHHHHHH-----------HhccCC--c-------chhHHHHHH-HHHHH
Confidence 345667676666666666665522221 2334444444 322210 0 123344444 79999
Q ss_pred HHhHHHHHhhh
Q 045253 655 QHLQELDDKIK 665 (694)
Q Consensus 655 ~~~~e~~~~~~ 665 (694)
+++++-++++.
T Consensus 326 ~~A~~~~~~L~ 336 (457)
T 3obv_E 326 KDAQEQYNKLR 336 (457)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999888887
No 8
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=15.54 E-value=1.3e+02 Score=25.52 Aligned_cols=27 Identities=22% Similarity=0.197 Sum_probs=0.4
Q ss_pred HhhcCCCCCCCCCchHHHHHHHHhHHH
Q 045253 517 EADVEPNFGFLPFHSACYSKLLVSLVK 543 (694)
Q Consensus 517 eA~~EP~~W~~pF~~~~Y~kvl~s~~r 543 (694)
+...||+.|+.-|+.+.|..-+.++.|
T Consensus 3 ~~~~~~~~w~~~~s~eel~~~L~~~~k 29 (71)
T 3bbp_D 3 LGSLEPPLWHAEFTKEELVQKLSSTTK 29 (71)
T ss_dssp --------------------------C
T ss_pred CCCCCcchhhccCCHHHHHHHHHHHHH
Confidence 455699999999998888776655543
No 9
>2lq4_p Lysophosphatidic acid receptor 1; GPCR, G protein-coupled receptor, de novo protein; NMR {Artificial gene}
Probab=15.26 E-value=75 Score=26.47 Aligned_cols=21 Identities=52% Similarity=0.507 Sum_probs=17.9
Q ss_pred hhHHHHHHHhccccCCccccccC
Q 045253 603 KSLAILEKKLGRKTFNVFRDIEC 625 (694)
Q Consensus 603 ks~~~l~~~~~~~~~~~~~DlE~ 625 (694)
|-++.||||+|.- |--||+|.
T Consensus 20 kelaqlekelqaw--ncicdien 40 (80)
T 2lq4_p 20 KELAQLEKELQAW--NCICDIEN 40 (80)
T ss_dssp TTHHHHHHHHTTT--CSSCCCCC
T ss_pred HHHHHHHHHHHHH--hhhccccc
Confidence 5788999999876 88899984
No 10
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=13.10 E-value=2.1e+02 Score=24.59 Aligned_cols=36 Identities=8% Similarity=0.119 Sum_probs=26.2
Q ss_pred chhHHHHHhhhchhhhhhhHHHHHHHhhccCccccc
Q 045253 186 KSTALASISLAKSLTKSGTKHIQNIKRYQENMKWEI 221 (694)
Q Consensus 186 ~~~~~~l~~qak~l~~aa~k~l~~i~~~~~d~~WEr 221 (694)
......+-.++..|...+....+.=+++...|||..
T Consensus 32 gekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmwwkn 67 (91)
T 3hd7_A 32 DQKLSELDDRADALQAGASQFETSAAKLKRKYWWKN 67 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666777777777777777777888889986
Done!