Query 045253
Match_columns 694
No_of_seqs 85 out of 87
Neff 4.3
Searched_HMMs 13730
Date Mon Mar 25 20:04:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045253.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045253hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v9da_ a.207.1.1 (A:) Diaphan 31.6 35 0.0026 32.8 6.6 98 538-665 156-260 (332)
2 d1gqea_ e.38.1.1 (A:) Polypept 15.8 73 0.0053 31.5 5.3 37 514-553 33-69 (362)
3 d1rh5b_ f.23.28.1 (B:) Preprot 13.6 69 0.0051 24.1 3.3 35 651-687 2-36 (56)
4 d1ux5a_ a.207.1.1 (A:) Bni1 {B 10.8 3.1E+02 0.023 26.5 8.4 90 550-665 260-350 (411)
5 d2q0zx1 a.289.1.1 (X:33-208) P 8.9 3.4E+02 0.025 22.7 7.0 67 157-236 67-134 (176)
6 d1seta1 a.2.7.1 (A:1-110) Sery 7.2 5E+02 0.037 20.2 7.4 28 589-622 77-107 (110)
7 d1lkia_ a.26.1.1 (A:) Leukemia 7.1 3.6E+02 0.027 23.5 6.1 34 522-560 54-88 (172)
8 d2yvxa3 f.57.1.1 (A:276-448) M 7.0 1.8E+02 0.013 25.7 4.2 34 386-422 106-139 (173)
9 d2f1ka1 a.100.1.12 (A:166-279) 5.5 2.6E+02 0.019 22.6 4.1 33 643-676 70-102 (114)
10 d1alua_ a.26.1.1 (A:) Interleu 5.4 1.6E+02 0.012 25.9 2.9 76 517-597 37-117 (166)
No 1
>d1v9da_ a.207.1.1 (A:) Diaphanous protein homolog 1, dia1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=31.57 E-value=35 Score=32.79 Aligned_cols=98 Identities=13% Similarity=0.263 Sum_probs=54.0
Q ss_pred HHhHHHHHH------HHHHHHHHHHHHHhhhhhhcccchhhhhhhcchhHHHHHHHhhhhhhhhhhhHhhh-hhHHHHHH
Q 045253 538 LVSLVKMVH------LLHFCSYSIGFLEQESQKIDKASWKEDVQKLDGDVKLVKEMACSSIKCFNDAITTI-KSLAILEK 610 (694)
Q Consensus 538 l~s~~rl~~------Ll~~~~~av~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~k~~~~~i~~~-ks~~~l~~ 610 (694)
++|+.||.| -..++.+.++.+.+..+.. .++..|+.+..+...-+++.++.-+..+ +.+..+++
T Consensus 156 L~sL~kL~d~Ks~d~~~tLL~~iv~~~~~~~p~l---------~~~~~eL~~v~~ask~~~~~l~~~~~~l~~~l~~~~~ 226 (332)
T d1v9da_ 156 ISFLCKLRDTKSADQKMTLLHFLAELCENDHPEV---------LKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVER 226 (332)
T ss_dssp -CCHHHHHHSBCSSTTSBHHHHHHHHHHHSCCTT---------SSGGGGCTTHHHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHhhccCCCCCccHHHHHHHHHHHhCchh---------ccchhhhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 566666665 1223333455555554332 4455677777776666666666533333 33455555
Q ss_pred HhccccCCccccccCCCCCCCccccCCCCCCchhhhHHHHHHHHHHhHHHHHhhh
Q 045253 611 KLGRKTFNVFRDIECGNSPIGLCVPNGILDSDENKEKIVINTYLQHLQELDDKIK 665 (694)
Q Consensus 611 ~~~~~~~~~~~DlE~g~~~~~~~~~~~~~~~~~~~~~~~~~sfl~~~~e~~~~~~ 665 (694)
++++. .. .. +++|...+. +..|++.+++-+..+.
T Consensus 227 ~l~~~-----------~~---~~------~~~d~f~~~-~~~Fl~~a~~~l~~l~ 260 (332)
T d1v9da_ 227 DVQNF-----------PA---AT------DEKDKFVEK-MTSFVKDAQEQYNKLR 260 (332)
T ss_dssp HHHTC-----------CC---CS------SSSCCHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHhc-----------cc---cc------cchhhHHHH-HHHHHHHHHHHHHHHH
Confidence 55421 11 11 124445555 7899999998888777
No 2
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=15.83 E-value=73 Score=31.51 Aligned_cols=37 Identities=8% Similarity=-0.065 Sum_probs=23.2
Q ss_pred HHHHhhcCCCCCCCCCchHHHHHHHHhHHHHHHHHHHHHH
Q 045253 514 FIREADVEPNFGFLPFHSACYSKLLVSLVKMVHLLHFCSY 553 (694)
Q Consensus 514 ~l~eA~~EP~~W~~pF~~~~Y~kvl~s~~rl~~Ll~~~~~ 553 (694)
-+.+-...|+||..| +.|.++..-.++|-..+..+..
T Consensus 33 ELE~~lsdP~fW~D~---~kAqkl~KE~s~L~~iVe~~~~ 69 (362)
T d1gqea_ 33 EVNAELEQPDVWNEP---ERAQALGKERSSLEAVVDTLDQ 69 (362)
T ss_dssp HHHHHHHSGGGGGSH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCChhhhCH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 455667899999755 5666666555555555544433
No 3
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=13.61 E-value=69 Score=24.11 Aligned_cols=35 Identities=17% Similarity=0.316 Sum_probs=25.0
Q ss_pred HHHHHHhHHHHHhhhhhhHHHHHhHHHHhhhhhhhhH
Q 045253 651 NTYLQHLQELDDKIKKVDVEEFKNQIVLSLSALGYCM 687 (694)
Q Consensus 651 ~sfl~~~~e~~~~~~~~~e~~~k~~~~~~l~~lgfc~ 687 (694)
++|+..|+.++..-..++-||++.-. ...++||++
T Consensus 2 k~F~~es~Rvlk~~~KP~~~Ef~~ia--~v~~iG~~i 36 (56)
T d1rh5b_ 2 KEFIEECRRVWLVLKKPTKDEYLAVA--KVTALGISL 36 (56)
T ss_dssp CHHHHHHHHHHHSEECCCHHHHHHHH--HHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCCCHHHHHHHH--HHHHHHHHH
Confidence 58999999999988888888875432 344555553
No 4
>d1ux5a_ a.207.1.1 (A:) Bni1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=10.79 E-value=3.1e+02 Score=26.46 Aligned_cols=90 Identities=11% Similarity=0.095 Sum_probs=49.1
Q ss_pred HHHHHHHHHHhhhhhhcccchhhhhhhcchhHHHHHHHhhhhhhhhhhhHhhh-hhHHHHHHHhccccCCccccccCCCC
Q 045253 550 FCSYSIGFLEQESQKIDKASWKEDVQKLDGDVKLVKEMACSSIKCFNDAITTI-KSLAILEKKLGRKTFNVFRDIECGNS 628 (694)
Q Consensus 550 ~~~~av~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~k~~~~~i~~~-ks~~~l~~~~~~~~~~~~~DlE~g~~ 628 (694)
++.+.++.+++..+.. .++..|+.++.....-++..+..-+..+ +.+..++++++.. +.
T Consensus 260 LL~yiv~~~~~~~p~l---------~~~~~el~~v~~a~~~~~~~l~~~~~~L~~~l~~i~~~~~~~-----------~~ 319 (411)
T d1ux5a_ 260 FLNYVEKIVRLNYPSF---------NDFLSELEPVLDVVKVSIEQLVNDCKDFSQSIVNVERSVEIG-----------NL 319 (411)
T ss_dssp HHHHHHHHHHHHCGGG---------GGHHHHTHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHS-----------TT
T ss_pred HHHHHHHHHHHhCcHh---------hccHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhh-----------cc
Confidence 3444456665554322 3445677777766666666655533322 4566677777542 11
Q ss_pred CCCccccCCCCCCchhhhHHHHHHHHHHhHHHHHhhh
Q 045253 629 PIGLCVPNGILDSDENKEKIVINTYLQHLQELDDKIK 665 (694)
Q Consensus 629 ~~~~~~~~~~~~~~~~~~~~~~~sfl~~~~e~~~~~~ 665 (694)
+...- ..++|..-.. +..|++.+++-++.+.
T Consensus 320 ~~~~~-----~~~~d~f~~~-~~~fl~~~~~~~~~l~ 350 (411)
T d1ux5a_ 320 SDSSK-----FHPLDKVLIK-TLPVLPEARKKGDLLE 350 (411)
T ss_dssp TCTTS-----SCTTCCHHHH-HHHHHHHHHHHHHHHH
T ss_pred ccccc-----ccchhhHHHH-HHHHHHHHHHHHHHHH
Confidence 11110 0123444444 6889999888777777
No 5
>d2q0zx1 a.289.1.1 (X:33-208) Protein pro2281 {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.92 E-value=3.4e+02 Score=22.73 Aligned_cols=67 Identities=12% Similarity=0.076 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhccchhHHHHHhhhchhhhhhhHHHHHHHhhccCccccc-hhhcccccCCChhh
Q 045253 157 YEVKWNCKQLADNASERLRLYVKALCAEDKSTALASISLAKSLTKSGTKHIQNIKRYQENMKWEI-PFKFLGSNYVKPVK 235 (694)
Q Consensus 157 ~~vr~~~k~~~e~~~erLnl~vdafc~~d~~~~~~l~~qak~l~~aa~k~l~~i~~~~~d~~WEr-~~~~~~~~~~~~~~ 235 (694)
..++.+.+...+++...++.++|-.+.+..... +...+.=.+-..-.+||.. |.+.|.....+..+
T Consensus 67 ~sl~~D~~~I~~~~~Rll~al~ei~~~~~~~~~-------------~~~~l~l~q~i~q~~w~~~~~L~Qlp~~~~~~~~ 133 (176)
T d2q0zx1 67 AELQSDTEEILSKAIRLIQACVDVLSSNGWLSP-------------ALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIK 133 (176)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTBHHH-------------HHHHHHHHHHHHHTCCTTSCGGGGSTTCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH-------------HHHHHHHHHHHHHhcCCCCCCccCCCcCCHHHHH
Confidence 378999999999999999999999887644322 1122222223333577777 77766655444444
Q ss_pred h
Q 045253 236 K 236 (694)
Q Consensus 236 ~ 236 (694)
+
T Consensus 134 k 134 (176)
T d2q0zx1 134 R 134 (176)
T ss_dssp H
T ss_pred H
Confidence 3
No 6
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=7.20 E-value=5e+02 Score=20.24 Aligned_cols=28 Identities=14% Similarity=-0.007 Sum_probs=17.6
Q ss_pred hhhhhhhhhhHhhhhhHHHHHHHhcc---ccCCcccc
Q 045253 589 CSSIKCFNDAITTIKSLAILEKKLGR---KTFNVFRD 622 (694)
Q Consensus 589 ~~~~k~~~~~i~~~ks~~~l~~~~~~---~~~~~~~D 622 (694)
..-++.+|+ .+..+|.+++. .-||++||
T Consensus 77 k~~i~~le~------~~~~~~~~l~~~ll~iPNi~~~ 107 (110)
T d1seta1 77 GEEAKRLEE------ALREKEARLEALLLQVPLPPWP 107 (110)
T ss_dssp HHHHHHHHH------HHHHHHHHHHHHHTTCCCCCCT
T ss_pred HHHHHHHHH------HHHHHHHHHHHHHHcCCCCCCc
Confidence 344555555 56667777765 56787776
No 7
>d1lkia_ a.26.1.1 (A:) Leukemia inhibitory factor (LIF) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.08 E-value=3.6e+02 Score=23.55 Aligned_cols=34 Identities=32% Similarity=0.531 Sum_probs=18.6
Q ss_pred CCC-CCCCCchHHHHHHHHhHHHHHHHHHHHHHHHHHHHh
Q 045253 522 PNF-GFLPFHSACYSKLLVSLVKMVHLLHFCSYSIGFLEQ 560 (694)
Q Consensus 522 P~~-W~~pF~~~~Y~kvl~s~~rl~~Ll~~~~~av~~l~~ 560 (694)
||. -|||||..--+| .||..|-+..++.=..|..
T Consensus 54 Pn~tdFPpFh~n~t~k-----~klVelYri~ayL~aSlgN 88 (172)
T d1lkia_ 54 PNMTDFPSFHGNGTEK-----TKLVELYRMVAYLSASLTN 88 (172)
T ss_dssp CCCTTSCCCCTTSCHH-----HHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCcCCCCchH-----HHHHHHHHHHHHHcccccc
Confidence 344 799998765554 3455544444444444433
No 8
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=7.03 E-value=1.8e+02 Score=25.73 Aligned_cols=34 Identities=15% Similarity=0.134 Sum_probs=24.9
Q ss_pred CCCcccHHHHHHHHHhCCCccccchheehhhhhhhcc
Q 045253 386 PNGIWSGLSAAISFATAREATFKRTVYGVLGCFLFEK 422 (694)
Q Consensus 386 e~gyWA~lt~AIa~~ag~~~Tf~GTv~G~l~~~v~~~ 422 (694)
...++-++.+.+++... ..-++++|.+.++++.|
T Consensus 106 ~~~~~l~~vi~~sl~~~---~~ia~~~G~~lPlll~k 139 (173)
T d2yvxa3 106 DGHPLLLPVVGVSLVLI---VFFANLVGAMLPFLLRR 139 (173)
T ss_dssp TSCCSSCHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 34556677777777655 44588999999999885
No 9
>d2f1ka1 a.100.1.12 (A:166-279) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=5.55 E-value=2.6e+02 Score=22.60 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=25.5
Q ss_pred hhhhHHHHHHHHHHhHHHHHhhhhhhHHHHHhHH
Q 045253 643 ENKEKIVINTYLQHLQELDDKIKKVDVEEFKNQI 676 (694)
Q Consensus 643 ~~~~~~~~~sfl~~~~e~~~~~~~~~e~~~k~~~ 676 (694)
+++.+. +..|.+..+++.+.+.++|.++++..+
T Consensus 70 ~~i~~~-l~~~~~~L~~l~~~l~~~d~~~l~~~l 102 (114)
T d2f1ka1 70 RALLKS-LQDYRQHLDQLITLISNQQWPELHRLL 102 (114)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 556666 788999999999999877777775543
No 10
>d1alua_ a.26.1.1 (A:) Interleukin-6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.42 E-value=1.6e+02 Score=25.93 Aligned_cols=76 Identities=17% Similarity=0.268 Sum_probs=41.5
Q ss_pred HhhcCCCCCCCCC--chHHHHHHH---HhHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhhhhhcchhHHHHHHHhhhh
Q 045253 517 EADVEPNFGFLPF--HSACYSKLL---VSLVKMVHLLHFCSYSIGFLEQESQKIDKASWKEDVQKLDGDVKLVKEMACSS 591 (694)
Q Consensus 517 eA~~EP~~W~~pF--~~~~Y~kvl---~s~~rl~~Ll~~~~~av~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~ 591 (694)
||.+|.|.=.|+. ...|+..-+ .-+.||..=|..+....++|+.+++.. ++.+.-+..+++++...+-.-
T Consensus 37 ~~la~~nl~lP~~~~~dgC~~~gfn~e~CL~ri~~GL~~yq~lL~~l~~~~~~~-----~~~~~~l~~~~~~L~~~i~qk 111 (166)
T d1alua_ 37 EALAENNLNLPKMAEKDGCFQSGFNEETCLVKIITGLLEFEVYLEYLQNRFESS-----EEQARAVQMSTKVLIQFLQKK 111 (166)
T ss_dssp ------CCCCCCCCGGGTCSSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHCSTT-----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhccCCCCCcCccCCCCccccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----cccHHHHHHHHHHHHHHHHHH
Confidence 4445555422332 333554443 567888888889988889988886322 344444455666665555555
Q ss_pred hhhhhh
Q 045253 592 IKCFND 597 (694)
Q Consensus 592 ~k~~~~ 597 (694)
+|.+++
T Consensus 112 ~k~~~~ 117 (166)
T d1alua_ 112 AKNLDA 117 (166)
T ss_dssp TSSSCC
T ss_pred HhCccc
Confidence 555544
Done!