BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045254
(444 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PZ2|A Chain A, Crystal Structure Of A Transient Covalent Reaction
Intermediate Of A Family 51 Alpha-L-Arabinofuranosidase
pdb|1PZ2|B Chain B, Crystal Structure Of A Transient Covalent Reaction
Intermediate Of A Family 51 Alpha-L-Arabinofuranosidase
pdb|1QW8|A Chain A, Crystal Structure Of A Family 51 Alpha-L-
Arabinofuranosidase In Complex With Ara-Alpha(1,3)-Xyl
pdb|1QW8|B Chain B, Crystal Structure Of A Family 51 Alpha-L-
Arabinofuranosidase In Complex With Ara-Alpha(1,3)-Xyl
pdb|1QW9|A Chain A, Crystal Structure Of A Family 51 Alpha-L-
Arabinofuranosidase In Complex With 4-Nitrophenyl-Ara
pdb|1QW9|B Chain B, Crystal Structure Of A Family 51 Alpha-L-
Arabinofuranosidase In Complex With 4-Nitrophenyl-Ara
Length = 502
Score = 33.9 bits (76), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 77 HGEDHVKMIQEHKWRYLGNLLNRLKNAKGLGLE--DFLKAVEPLE--MKARECYSETIHL 132
H DHV I H+ Y GN N N L LE DF+++V + +KA++ +TIHL
Sbjct: 233 HTYDHVDYISLHQ--YYGNRDNDTANYLALSLEMDDFIRSVVAIADYVKAKKRSKKTIHL 290
Query: 133 DTDEF 137
DE+
Sbjct: 291 SFDEW 295
>pdb|1PZ3|A Chain A, Crystal Structure Of A Family 51 (gh51)
Alpha-l-arabinofuranosidase From Geobacillus
Stearothermophilus T6
pdb|1PZ3|B Chain B, Crystal Structure Of A Family 51 (gh51)
Alpha-l-arabinofuranosidase From Geobacillus
Stearothermophilus T6
Length = 502
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 77 HGEDHVKMIQEHKWRYLGNLLNRLKNAKGLGLE--DFLKAVEPLE--MKARECYSETIHL 132
H DHV I H+ Y GN N N L LE DF+++V + +KA++ +TIHL
Sbjct: 233 HTYDHVDYISLHQ--YYGNRDNDTANYLALSLEMDDFIRSVVAIADYVKAKKRSKKTIHL 290
Query: 133 DTDEF 137
DE+
Sbjct: 291 SFDEW 295
>pdb|1GKJ|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant Y280f From
Pseudomonas Putida
Length = 507
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 52/136 (38%), Gaps = 12/136 (8%)
Query: 14 VIRIWEVNKERLESMHKK--IQEPPRLLSKSAGKKSCCIFRVPQSFVEVHGKSYE-PHIV 70
+ I +++ R+ M K Q PP L+ I +V + + K+ PH V
Sbjct: 343 IAEIGSLSERRISLMMDKHMSQLPPFLVENGGVNSGFMIAQVTAAALASENKALSHPHSV 402
Query: 71 -SIGPYHHGEDHVKMI---QEHKWRYLGNL-----LNRLKNAKGLGLEDFLKAVEPLEMK 121
S+ + EDHV M + W N + L +GL L LK LE
Sbjct: 403 DSLPTSANQEDHVSMAPAAGKRLWEMAENTRGVLAIEWLGACQGLDLRKGLKTSAKLEKA 462
Query: 122 ARECYSETIHLDTDEF 137
+ SE H D D F
Sbjct: 463 RQALRSEVAHYDRDRF 478
>pdb|1GKM|A Chain A, Histidine Ammonia-Lyase (Hal) From Pseudomonas Putida
Inhibited With L-Cysteine
pdb|1B8F|A Chain A, Histidine Ammonia-Lyase (Hal) From Pseudomonas Putida
Length = 507
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 52/136 (38%), Gaps = 12/136 (8%)
Query: 14 VIRIWEVNKERLESMHKK--IQEPPRLLSKSAGKKSCCIFRVPQSFVEVHGKSYE-PHIV 70
+ I +++ R+ M K Q PP L+ I +V + + K+ PH V
Sbjct: 343 IAEIGSLSERRISLMMDKHMSQLPPFLVENGGVNSGFMIAQVTAAALASENKALSHPHSV 402
Query: 71 -SIGPYHHGEDHVKMI---QEHKWRYLGNL-----LNRLKNAKGLGLEDFLKAVEPLEMK 121
S+ + EDHV M + W N + L +GL L LK LE
Sbjct: 403 DSLPTSANQEDHVSMAPAAGKRLWEMAENTRGVLAIEWLGACQGLDLRKGLKTSAKLEKA 462
Query: 122 ARECYSETIHLDTDEF 137
+ SE H D D F
Sbjct: 463 RQALRSEVAHYDRDRF 478
>pdb|1GK3|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant D145a From
Pseudomonas Putida
Length = 509
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 52/136 (38%), Gaps = 12/136 (8%)
Query: 14 VIRIWEVNKERLESMHKK--IQEPPRLLSKSAGKKSCCIFRVPQSFVEVHGKSYE-PHIV 70
+ I +++ R+ M K Q PP L+ I +V + + K+ PH V
Sbjct: 345 IAEIGSLSERRISLMMDKHMSQLPPFLVENGGVNSGFMIAQVTAAALASENKALSHPHSV 404
Query: 71 -SIGPYHHGEDHVKMI---QEHKWRYLGNL-----LNRLKNAKGLGLEDFLKAVEPLEMK 121
S+ + EDHV M + W N + L +GL L LK LE
Sbjct: 405 DSLPTSANQEDHVSMAPAAGKRLWEMAENTRGVLAIEWLGACQGLDLRKGLKTSAKLEKA 464
Query: 122 ARECYSETIHLDTDEF 137
+ SE H D D F
Sbjct: 465 RQALRSEVAHYDRDRF 480
>pdb|1EB4|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant F329a From
Pseudomonas Putida
Length = 507
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 52/136 (38%), Gaps = 12/136 (8%)
Query: 14 VIRIWEVNKERLESMHKK--IQEPPRLLSKSAGKKSCCIFRVPQSFVEVHGKSYE-PHIV 70
+ I +++ R+ M K Q PP L+ I +V + + K+ PH V
Sbjct: 343 IAEIGSLSERRISLMMDKHMSQLPPFLVENGGVNSGFMIAQVTAAALASENKALSHPHSV 402
Query: 71 -SIGPYHHGEDHVKMI---QEHKWRYLGNL-----LNRLKNAKGLGLEDFLKAVEPLEMK 121
S+ + EDHV M + W N + L +GL L LK LE
Sbjct: 403 DSLPTSANQEDHVSMAPAAGKRLWEMAENTRGVLAIEWLGACQGLDLRKGLKTSAKLEKA 462
Query: 122 ARECYSETIHLDTDEF 137
+ SE H D D F
Sbjct: 463 RQALRSEVAHYDRDRF 478
>pdb|1GK2|A Chain A, Histidine Ammonia-Lyase (Hal) Mutant F329g From
Pseudomonas Putida
pdb|1GK2|B Chain B, Histidine Ammonia-Lyase (Hal) Mutant F329g From
Pseudomonas Putida
pdb|1GK2|C Chain C, Histidine Ammonia-Lyase (Hal) Mutant F329g From
Pseudomonas Putida
pdb|1GK2|D Chain D, Histidine Ammonia-Lyase (Hal) Mutant F329g From
Pseudomonas Putida
Length = 509
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 52/136 (38%), Gaps = 12/136 (8%)
Query: 14 VIRIWEVNKERLESMHKK--IQEPPRLLSKSAGKKSCCIFRVPQSFVEVHGKSYE-PHIV 70
+ I +++ R+ M K Q PP L+ I +V + + K+ PH V
Sbjct: 345 IAEIGSLSERRISLMMDKHMSQLPPFLVENGGVNSGFMIAQVTAAALASENKALSHPHSV 404
Query: 71 -SIGPYHHGEDHVKMI---QEHKWRYLGNL-----LNRLKNAKGLGLEDFLKAVEPLEMK 121
S+ + EDHV M + W N + L +GL L LK LE
Sbjct: 405 DSLPTSANQEDHVSMAPAAGKRLWEMAENTRGVLAIEWLGACQGLDLRKGLKTSAKLEKA 464
Query: 122 ARECYSETIHLDTDEF 137
+ SE H D D F
Sbjct: 465 RQALRSEVAHYDRDRF 480
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,138,919
Number of Sequences: 62578
Number of extensions: 547652
Number of successful extensions: 1478
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1478
Number of HSP's gapped (non-prelim): 8
length of query: 444
length of database: 14,973,337
effective HSP length: 102
effective length of query: 342
effective length of database: 8,590,381
effective search space: 2937910302
effective search space used: 2937910302
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (25.0 bits)