BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045254
(444 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SD53|Y3720_ARATH UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=1
SV=1
Length = 476
Score = 250 bits (639), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 155/430 (36%), Positives = 240/430 (55%), Gaps = 33/430 (7%)
Query: 36 PRLLSKSAGKKSCCIFRVPQSFVEVHGKSYEPHIVSIGPYHHGEDHVKMIQEHKWRYLGN 95
P LL +SAGK+SCCIFRVP+SFV ++ K+Y+P +VSIGPYH+GE H++MIQ+HK R L
Sbjct: 34 PVLLLESAGKESCCIFRVPESFVALNPKAYKPKVVSIGPYHYGEKHLQMIQQHKPRLLQL 93
Query: 96 LLNRLKNAKGLGLEDFLKAVEPLEMKARECYSETIHLDTDEFVELLVLDGIFLIELFRLV 155
L+ K K + +KAV LE K R+ YSE + D + ++VLDG F++ +F ++
Sbjct: 94 FLDEAK-KKDVEENVLVKAVVDLEDKIRKSYSEELKTGHD-LMFMMVLDGCFILMVFLIM 151
Query: 156 AGLVAVEANDPLISVTWILSSFYKDFLRLENQIPYFVLECLFDLSKLPGEESGHTLATLA 215
+G + + + DP+ S+ W+LSS D L LENQ+P+FVL+ L+ SK+ G S L +A
Sbjct: 152 SGNIEL-SEDPIFSIPWLLSSIQSDLLLLENQVPFFVLQTLYVGSKI-GVSSD--LNRIA 207
Query: 216 LGFFNNTMLRPCDDIANYKYHEGVHLLDLVRSSFIP----SDLAE-----------PRRD 260
FF N + + ++ ++ HLLDL+R +F+P SD A +
Sbjct: 208 FHFFKNPIDKEGSYWEKHRNYKAKHLLDLIRETFLPNTSESDKASSPHVQVQLHEGKSGN 267
Query: 261 VISVTHTILPI----SKLLYAGINF--NAAPADSFLAVKFRNGAFEMPSITIDDFMTCFL 314
V SV +P+ +L GI F + DS L V+ + ++P + D F++ F
Sbjct: 268 VPSVDSKAVPLILSAKRLRLQGIKFRLRRSKEDSILNVRLKKNKLQIPQLRFDGFISSFF 327
Query: 315 VNSVAYEQCHSSCSKHFSVYASLLGSLVNTSTDVEHL-CDRNIITNYLGKPAEVERFIYN 373
+N VA+EQ ++ S + Y +G L+N DV L D+ II N+ G EV F
Sbjct: 328 LNCVAFEQFYTDSSNEITTYIVFMGCLLNNEEDVTFLRNDKLIIENHFGSNNEVSEFFKT 387
Query: 374 LEKDVAFDVDRCYLSSLFKDVHDYYCYSWRVQWAAFKYSYRAR-----LQCGAVILLFLT 428
+ KDV F+VD YL+++FK V++Y + WA F++++ C + ++ LT
Sbjct: 388 ISKDVVFEVDTSYLNNVFKGVNEYTKKWYNGLWAGFRHTHFESPWTFLSSCAVLFVILLT 447
Query: 429 VAQTFFTIYS 438
+ Q+ I S
Sbjct: 448 MLQSTVAILS 457
>sp|P0C897|Y3264_ARATH Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana
GN=At3g02645 PE=3 SV=1
Length = 529
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 99/216 (45%), Gaps = 26/216 (12%)
Query: 47 SCCIFRVPQSFVEVHGKSYEPHIVSIGPYHHGEDHVKMIQEHKWRYLGNLLNRLKNAKGL 106
+ IF VP++ + H SY PH VSIGPYH + + ++ +K + N+ + +
Sbjct: 42 TVSIFNVPKALMCSHPDSYTPHRVSIGPYHCLKPELHEMERYKLMIARKIRNQYNSFR-- 99
Query: 107 GLEDFLKAVEPLEMKARECYSETIHLDTDEFVELLVLDGIFLIEL-----FRLVAGLVAV 161
D ++ ++ +E+K R CY + I + + + ++ +D FLIE FR V L+
Sbjct: 100 -FHDLVEKLQSMEIKIRACYHKYIGFNGETLLWIMAVDSSFLIEFLKIYSFRKVETLINR 158
Query: 162 EANDPLISVTWILSSFYKDFLRLENQIPYFVLECLFDLSKLPGEESGHTLATLALGFFNN 221
++ ++ +D + +ENQIP FVL + E + L ++ G +
Sbjct: 159 VGHNEIL----------RDIMMIENQIPLFVLRKTLEFQLESTESADDLLLSVLTGLCKD 208
Query: 222 TMLRPC------DDIANYKYHEGVHLLDLVRSSFIP 251
L P D I ++ E H+LD + +P
Sbjct: 209 --LSPLVIKFDDDQILKAQFQECNHILDFLYQMIVP 242
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 63/141 (44%), Gaps = 3/141 (2%)
Query: 267 TILPISKLLYAGINFNAAPADSFLAVKF--RNGAFEMPSITIDDFMTCFLVNSVAYEQCH 324
TI +S L AG+ F + V F +G F +P I +D L N VAYE +
Sbjct: 344 TIPSVSDLHKAGVRFKPTAHGNISTVTFDSNSGQFYLPVINLDINTETVLRNLVAYEATN 403
Query: 325 SSCSKHFSVYASLLGSLVNTSTDVEHLCDRNIITNYLGKPAEVERFIYNLEKDVAFDVDR 384
+S F+ Y L+ ++++ DV L ++ ++ + L E + K V
Sbjct: 404 TSGPLVFTRYTELINGIIDSEEDVRLLREQGVLVSRLKSDQEAAEMWNGMSKSVRL-TKV 462
Query: 385 CYLSSLFKDVHDYYCYSWRVQ 405
+L +DV+ YY W+V+
Sbjct: 463 GFLDKTIEDVNRYYTGRWKVK 483
>sp|B2GBR8|HIS8_LACF3 Histidinol-phosphate aminotransferase OS=Lactobacillus fermentum
(strain NBRC 3956 / LMG 18251) GN=hisC PE=3 SV=1
Length = 361
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 325 SSCSKHFSVYASLLGSLVNTSTDVEHLCDRNIITNYLGKPAEVERFIYNLEKDVAFDVDR 384
+ + HF +L +++N +T + +C+ N T L P +E F+ + KD +D
Sbjct: 135 NPATGHFDFAGAL--AVINEATRLVWICNPNNPTGVLESPQAIEDFVRQVPKDTLVFIDE 192
Query: 385 CYL 387
YL
Sbjct: 193 AYL 195
>sp|Q9XBQ3|ABFA_GEOSE Alpha-N-arabinofuranosidase OS=Geobacillus stearothermophilus
GN=abfA PE=1 SV=4
Length = 502
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 6/65 (9%)
Query: 77 HGEDHVKMIQEHKWRYLGNLLNRLKNAKGLGLE--DFLKAVEPLE--MKARECYSETIHL 132
H DHV I H+ Y GN N N L LE DF+++V + +KA++ +TIHL
Sbjct: 233 HTYDHVDYISLHQ--YYGNRDNDTANYLALSLEMDDFIRSVVAIADYVKAKKRSKKTIHL 290
Query: 133 DTDEF 137
DE+
Sbjct: 291 SFDEW 295
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.139 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 163,771,147
Number of Sequences: 539616
Number of extensions: 6887827
Number of successful extensions: 19234
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 19221
Number of HSP's gapped (non-prelim): 7
length of query: 444
length of database: 191,569,459
effective HSP length: 121
effective length of query: 323
effective length of database: 126,275,923
effective search space: 40787123129
effective search space used: 40787123129
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 63 (28.9 bits)