Query 045254
Match_columns 444
No_of_seqs 129 out of 667
Neff 7.0
Searched_HMMs 29240
Date Mon Mar 25 20:05:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045254.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045254hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3s8f_C Cytochrome C oxidase po 15.8 1.4E+02 0.0047 19.2 3.0 25 416-440 6-30 (34)
2 3ism_C CG4930; endonuclease, e 15.6 1.2E+02 0.0042 29.3 4.0 71 343-413 217-303 (359)
3 2x4i_A CAG38848, uncharacteriz 15.5 1.6E+02 0.0053 24.2 4.1 33 344-377 28-60 (114)
4 1faf_A Large T antigen; J doma 11.9 1.6E+02 0.0055 22.0 3.1 60 338-399 1-60 (79)
5 2j6b_A AFV3-109; sulfolobus, c 11.5 1.5E+02 0.0052 24.1 2.9 33 344-377 26-58 (109)
6 2j85_A STIV B116; viral protei 10.6 3E+02 0.01 22.8 4.4 32 345-377 29-64 (122)
7 2kru_A Light-independent proto 10.1 1.1E+02 0.0038 22.4 1.5 13 186-198 15-27 (63)
8 1u9l_A Transcription elongatio 8.9 3.1E+02 0.01 20.2 3.6 29 336-369 7-35 (70)
9 3ff5_A PEX14P, peroxisomal bio 8.4 2.8E+02 0.0094 19.6 2.9 22 346-373 32-53 (54)
10 3f2b_A DNA-directed DNA polyme 8.2 5.2E+02 0.018 29.2 6.6 85 271-360 935-1021(1041)
No 1
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=15.79 E-value=1.4e+02 Score=19.19 Aligned_cols=25 Identities=16% Similarity=0.376 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhccc
Q 045254 416 RLQCGAVILLFLTVAQTFFTIYSAV 440 (444)
Q Consensus 416 ~s~vaA~ill~lT~~QT~~sv~~~~ 440 (444)
.++++++.++-+.++=+++.++..|
T Consensus 6 ~GTl~~V~ilg~~I~i~W~~vf~lF 30 (34)
T 3s8f_C 6 KGALAVILVLTLTILVFWLGVYAVF 30 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cceehHHHHHHHHHHHHHHHHHeee
Confidence 4678888889999999999888654
No 2
>3ism_C CG4930; endonuclease, endonuclease inhibitor complex, metal complex, hydrolase, hydrolase inhibitor-hydrolase complex; 2.20A {Drosophila melanogaster}
Probab=15.62 E-value=1.2e+02 Score=29.27 Aligned_cols=71 Identities=10% Similarity=0.060 Sum_probs=46.2
Q ss_pred CChhhHHHHHhCCceecCCCChHHHHHHHHhhhcccc-------cCCCC--cchHHHHHHHHhHhc-----C--chhhhh
Q 045254 343 NTSTDVEHLCDRNIITNYLGKPAEVERFIYNLEKDVA-------FDVDR--CYLSSLFKDVHDYYC-----Y--SWRVQW 406 (444)
Q Consensus 343 ~t~eDV~lL~~~GII~n~lgsdeeva~lfn~L~~~~~-------~~~~~--~y~~~v~~~ln~~~~-----~--rw~~~~ 406 (444)
.-.+|-+.|-++||+++..-.|+--..-|+++|+.+. |+..+ .-|.++.+-|.+|.. + +.|-|+
T Consensus 217 ~PleDy~~Lmkr~v~t~~iv~d~i~~~~~~ki~~~ar~vIw~LLF~~~~~~e~~eKaa~lLqeyk~da~fygP~~YNeWI 296 (359)
T 3ism_C 217 NPLEEYRTLMKRFVLTKIIVPDSVHQASVKKIAAAAREIIWKLLFDGTPSAEDQNKAAELLQEYKGDAGFYGPDDYNSWI 296 (359)
T ss_dssp --CHHHHHHHHHHC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHHHCTHHHHHHH
T ss_pred CcHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhccccCCchHhHHH
Confidence 3457788888888888888788655667888876642 43322 248999999999854 3 356888
Q ss_pred Hhhhccc
Q 045254 407 AAFKYSY 413 (444)
Q Consensus 407 a~l~~~y 413 (444)
..||..-
T Consensus 297 vklrdel 303 (359)
T 3ism_C 297 FNLRDEV 303 (359)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887543
No 3
>2x4i_A CAG38848, uncharacterized protein 114; unknown function, DUF1874, archeal virus; 2.20A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=15.46 E-value=1.6e+02 Score=24.23 Aligned_cols=33 Identities=18% Similarity=0.148 Sum_probs=26.0
Q ss_pred ChhhHHHHHhCCceecCCCChHHHHHHHHhhhcc
Q 045254 344 TSTDVEHLCDRNIITNYLGKPAEVERFIYNLEKD 377 (444)
Q Consensus 344 t~eDV~lL~~~GII~n~lgsdeeva~lfn~L~~~ 377 (444)
+.++++.+..++-+++..| ++++|++.+.||.-
T Consensus 28 s~~EAk~~v~~~~~iSaIG-H~sTA~lls~Llg~ 60 (114)
T 2x4i_A 28 DRLEFCENIDNEDIINSIG-HDSTIQLINSLCGT 60 (114)
T ss_dssp CHHHHHHHHCCTTEEECCC-CHHHHHHHHHHHCC
T ss_pred CHHHHHHHhcccCeEEeec-cHHHHHHHHHHhCC
Confidence 3567777777777788888 67899999999963
No 4
>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1
Probab=11.85 E-value=1.6e+02 Score=21.95 Aligned_cols=60 Identities=7% Similarity=0.078 Sum_probs=36.4
Q ss_pred HhhhcCChhhHHHHHhCCceecCCCChHHHHHHHHhhhcccccCCCCcchHHHHHHHHhHhc
Q 045254 338 LGSLVNTSTDVEHLCDRNIITNYLGKPAEVERFIYNLEKDVAFDVDRCYLSSLFKDVHDYYC 399 (444)
Q Consensus 338 M~~LI~t~eDV~lL~~~GII~n~lgsdeeva~lfn~L~~~~~~~~~~~y~~~v~~~ln~~~~ 399 (444)
||.++...+--+...-=||=.+...+.+++-.-|++|++...+|.+.+ ...+..||+-|+
T Consensus 1 md~~~~~~~~~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~--~~~f~~i~~AYe 60 (79)
T 1faf_A 1 MDRVLSRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGS--HALMQELNSLWG 60 (79)
T ss_dssp CCCCCCHHHHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCC--HHHHHHHHHHHH
T ss_pred CcccccchhHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCC--HHHHHHHHHHHH
Confidence 333333333333333445554444578899999999999988876554 345566666553
No 5
>2j6b_A AFV3-109; sulfolobus, crenarchaea, viral protein; 1.3A {Acidianus filamentous virus 1} SCOP: d.321.1.1 PDB: 2j6c_A
Probab=11.51 E-value=1.5e+02 Score=24.11 Aligned_cols=33 Identities=12% Similarity=0.217 Sum_probs=26.3
Q ss_pred ChhhHHHHHhCCceecCCCChHHHHHHHHhhhcc
Q 045254 344 TSTDVEHLCDRNIITNYLGKPAEVERFIYNLEKD 377 (444)
Q Consensus 344 t~eDV~lL~~~GII~n~lgsdeeva~lfn~L~~~ 377 (444)
|.++++.+..++-+++..| +++.|++.+.||.-
T Consensus 26 s~~Ea~~~l~~~~~vSaIG-H~sTA~lls~Llg~ 58 (109)
T 2j6b_A 26 TIQEAKELVTKEQFTSAIG-HQATAELLSSILGV 58 (109)
T ss_dssp CHHHHHHHHHHSCEEECBC-SHHHHHHHHHHHTS
T ss_pred CHHHHHHHhcccceEEeec-cHHHHHHHHHHhCC
Confidence 5677777777777777887 67899999999963
No 6
>2j85_A STIV B116; viral protein, archaeal virus, crenarchaeal virus, STI archaea, crenarchaea, sulfolobus turreted icosa virus; 2.39A {Sulfolobus turreted icosahedral virus} SCOP: d.321.1.1
Probab=10.63 E-value=3e+02 Score=22.81 Aligned_cols=32 Identities=13% Similarity=0.130 Sum_probs=23.1
Q ss_pred hhhHHHHH----hCCceecCCCChHHHHHHHHhhhcc
Q 045254 345 STDVEHLC----DRNIITNYLGKPAEVERFIYNLEKD 377 (444)
Q Consensus 345 ~eDV~lL~----~~GII~n~lgsdeeva~lfn~L~~~ 377 (444)
.++++.+. .++-+++..| ++++|++.+.||.-
T Consensus 29 ~~Eake~l~~~~~~~~~vsaIG-H~sTAqlls~Llg~ 64 (122)
T 2j85_A 29 EEDFCLKLELRLEDGTLINAIG-HDSTINLVNTLCGT 64 (122)
T ss_dssp HHHHHHHHHHHHHTTCEEECCC-CHHHHHHHHHHHCC
T ss_pred HHHHHHHHhhhcccCceEEeec-cHHHHHHHHHHhCC
Confidence 34455554 5777788888 57899999999743
No 7
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=10.13 E-value=1.1e+02 Score=22.41 Aligned_cols=13 Identities=23% Similarity=0.600 Sum_probs=9.4
Q ss_pred cCCchHHHHHhhh
Q 045254 186 NQIPYFVLECLFD 198 (444)
Q Consensus 186 NQIPffVL~~L~~ 198 (444)
++|||||-.++=.
T Consensus 15 kkIP~FVR~kvrr 27 (63)
T 2kru_A 15 GKVPFFVRKKVRK 27 (63)
T ss_dssp TTSCHHHHHHHHH
T ss_pred HhCCHHHHHHHHH
Confidence 5699999766533
No 8
>1u9l_A Transcription elongation protein NUSA; escherichia coli NUSA, phage lambda protein N, regulation of RNA binding, transcription antitermination, X-RAY crystallography; 1.90A {Escherichia coli} SCOP: a.60.4.2 PDB: 1wcl_A
Probab=8.86 E-value=3.1e+02 Score=20.19 Aligned_cols=29 Identities=10% Similarity=0.020 Sum_probs=23.8
Q ss_pred HHHhhhcCChhhHHHHHhCCceecCCCChHHHHH
Q 045254 336 SLLGSLVNTSTDVEHLCDRNIITNYLGKPAEVER 369 (444)
Q Consensus 336 ~fM~~LI~t~eDV~lL~~~GII~n~lgsdeeva~ 369 (444)
.||..|==++.|++.|.+.|+ .+-|+|+.
T Consensus 7 ~f~~~lgI~e~~a~~L~~~Gf-----~tve~vA~ 35 (70)
T 1u9l_A 7 TFTKYLDIDEDFATVLVEEGF-----STLEELAY 35 (70)
T ss_dssp HHHHHHTCCHHHHHHHHHTTC-----CCHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHcCc-----CcHHHHHc
Confidence 688888889999999999998 45666653
No 9
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=8.39 E-value=2.8e+02 Score=19.62 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=15.8
Q ss_pred hhHHHHHhCCceecCCCChHHHHHHHHh
Q 045254 346 TDVEHLCDRNIITNYLGKPAEVERFIYN 373 (444)
Q Consensus 346 eDV~lL~~~GII~n~lgsdeeva~lfn~ 373 (444)
+=++.|.+||+ +++|+-..|++
T Consensus 32 ~K~~FL~sKGL------t~~EI~~Al~r 53 (54)
T 3ff5_A 32 TRRAFLKKKGL------TDEEIDLAFQQ 53 (54)
T ss_dssp HHHHHHHHTTC------CHHHHHHHHHH
T ss_pred HHHHHHHHcCC------CHHHHHHHHHc
Confidence 34678888887 67788776653
No 10
>3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A*
Probab=8.23 E-value=5.2e+02 Score=29.17 Aligned_cols=85 Identities=15% Similarity=0.058 Sum_probs=64.2
Q ss_pred HHHHHhcCcEEEeCC-CCCc-eeEEEecceeecCeEEEecchhhhhhhHHHHhhhcCCCCCccchHHHHHhhhcCChhhH
Q 045254 271 ISKLLYAGINFNAAP-ADSF-LAVKFRNGAFEMPSITIDDFMTCFLVNSVAYEQCHSSCSKHFSVYASLLGSLVNTSTDV 348 (444)
Q Consensus 271 AteL~~aGV~Fk~~~-~~~l-lDI~F~~G~L~IP~L~id~~Te~llrNLiA~Eq~~~~~~~~vtsYv~fM~~LI~t~eDV 348 (444)
+.|.++.||+|.+.+ ..|- .+-+.++|.+.+|=-.|..-.+....++++--+ ...++|.--|....--+...+
T Consensus 935 v~Ea~~~Gi~vlppDIn~S~~~~f~v~~~~Ir~gL~aIkGlG~~~a~~Iv~aR~-----~gpF~s~~Df~~R~~v~k~~l 1009 (1041)
T 3f2b_A 935 ALEMCERGFSFKNIDLYRSQATEFVIDGNSLIPPFNAIPGLGTNVAQAIVRARE-----EGEFLSKEDLQQRGKLSKTLL 1009 (1041)
T ss_dssp HHHHHHTTCEECCCCTTTCCSSCCEEETTEEECCGGGSTTCCHHHHHHHHHHHH-----TSCCCSHHHHHHHHTCCHHHH
T ss_pred HHHHHHcCCeeCcceEEecCCcceEEECCEEEEchHhhCCCCHHHHHHHHHHHh-----CCCCCCHHHHHHHHCcCHHHH
Confidence 457789999999864 1221 222335788888888888888888888886322 256899999998888899999
Q ss_pred HHHHhCCceecC
Q 045254 349 EHLCDRNIITNY 360 (444)
Q Consensus 349 ~lL~~~GII~n~ 360 (444)
+.|.+.|.+...
T Consensus 1010 E~Li~aGAfd~l 1021 (1041)
T 3f2b_A 1010 EYLESRGCLDSL 1021 (1041)
T ss_dssp HHHHHTTTTTTS
T ss_pred HHHHHCCCCcCC
Confidence 999999998754
Done!