Query 045254
Match_columns 444
No_of_seqs 129 out of 667
Neff 7.0
Searched_HMMs 13730
Date Mon Mar 25 20:05:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045254.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/045254hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 73.1 1.4 0.0001 24.8 2.6 21 424-444 5-25 (27)
2 d2i4ra1 c.149.1.1 (A:4-79) V-t 14.0 30 0.0022 24.3 1.3 24 50-73 53-76 (76)
3 d1ctda_ a.39.1.5 (A:) Troponin 13.9 45 0.0033 19.6 1.8 17 363-379 2-18 (34)
4 d1xmec1 f.23.9.1 (C:2-34) Bact 12.0 1E+02 0.0075 17.6 3.0 23 418-440 7-29 (33)
5 d1puee_ a.4.5.21 (E:) Transcri 11.5 1.2E+02 0.0089 21.8 4.1 45 353-401 27-71 (88)
6 d1v8ca2 d.129.5.1 (A:88-165) M 9.6 57 0.0041 22.3 1.5 13 297-309 49-61 (78)
7 d1duxc_ a.4.5.21 (C:) Elk-1 {H 9.4 1.8E+02 0.013 20.7 4.4 41 354-401 27-67 (86)
8 d2outa1 a.140.3.2 (A:94-131) U 9.1 44 0.0032 19.6 0.6 15 272-286 6-20 (38)
9 d2pfxa1 a.152.1.3 (A:1-190) Un 8.4 1E+02 0.0076 24.8 3.1 52 330-387 124-186 (190)
10 d1yo5c1 a.4.5.21 (C:247-334) S 8.2 1.8E+02 0.013 20.8 4.0 42 353-401 29-70 (88)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=73.09 E-value=1.4 Score=24.81 Aligned_cols=21 Identities=29% Similarity=0.605 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhcccCCCC
Q 045254 424 LLFLTVAQTFFTIYSAVRPQN 444 (444)
Q Consensus 424 ll~lT~~QT~~sv~~~~~~~~ 444 (444)
+++.|+...+|+.++-|++||
T Consensus 5 li~~tl~glf~aayqqykrpn 25 (27)
T d2e74g1 5 LVFATLGGLFYAAYQQYKRPN 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHTTSCC
T ss_pred ehHHHHHHHHHHHHHHhcCCC
Confidence 455688889999999999998
No 2
>d2i4ra1 c.149.1.1 (A:4-79) V-type ATP synthase subunit F, AtpF {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=13.97 E-value=30 Score=24.34 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=20.0
Q ss_pred eeecCccccccCCCCccceEEEec
Q 045254 50 IFRVPQSFVEVHGKSYEPHIVSIG 73 (444)
Q Consensus 50 I~rVP~~lr~~n~~aY~P~vVSIG 73 (444)
.-++|+.+++.-.+.-.|.++.||
T Consensus 53 a~~i~~~i~~~~~~~~~P~Vi~Ig 76 (76)
T d2i4ra1 53 LKKLPPVLRREIDEKVEPTFVSVG 76 (76)
T ss_dssp STTSCHHHHTTTTTCCSSEEEEEC
T ss_pred HHHhhHHHHHHHhcCCCCEEEecC
Confidence 346788888877888999999998
No 3
>d1ctda_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=13.90 E-value=45 Score=19.57 Aligned_cols=17 Identities=12% Similarity=0.184 Sum_probs=14.5
Q ss_pred ChHHHHHHHHhhhcccc
Q 045254 363 KPAEVERFIYNLEKDVA 379 (444)
Q Consensus 363 sdeeva~lfn~L~~~~~ 379 (444)
|.||+|++|+-.-|+..
T Consensus 2 sEeELae~FRifDkNaD 18 (34)
T d1ctda_ 2 SEEELANAFRIFDKNAD 18 (34)
T ss_dssp HHHHHHHHHHTTCCSSS
T ss_pred CHHHHHHHHHHHccCCc
Confidence 67899999999888864
No 4
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=11.98 E-value=1e+02 Score=17.55 Aligned_cols=23 Identities=17% Similarity=0.433 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhccc
Q 045254 418 QCGAVILLFLTVAQTFFTIYSAV 440 (444)
Q Consensus 418 ~vaA~ill~lT~~QT~~sv~~~~ 440 (444)
.++-+.+|.+|++-.++.++..+
T Consensus 7 al~vi~il~l~ilvfw~gv~avf 29 (33)
T d1xmec1 7 ALAVILVLTLTILVFWLGVYAVF 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666677777777776643
No 5
>d1puee_ a.4.5.21 (E:) Transcription factor PU.1, residues 171-259 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.47 E-value=1.2e+02 Score=21.79 Aligned_cols=45 Identities=4% Similarity=-0.059 Sum_probs=31.1
Q ss_pred hCCceecCCCChHHHHHHHHhhhcccccCCCCcchHHHHHHHHhHhcCc
Q 045254 353 DRNIITNYLGKPAEVERFIYNLEKDVAFDVDRCYLSSLFKDVHDYYCYS 401 (444)
Q Consensus 353 ~~GII~n~lgsdeeva~lfn~L~~~~~~~~~~~y~~~v~~~ln~~~~~r 401 (444)
.+||+.=...+.|+||+++-.--++- . +-+ |.++...|.-||+..
T Consensus 27 ~~g~F~fv~~~~e~VA~lWG~~K~Nr-~--~Mn-YeklSRaLRyYY~~~ 71 (88)
T d1puee_ 27 DKGTFQFSSKHKEALAHRWGIQKGNR-K--KMT-YEKMARALRNYGKTG 71 (88)
T ss_dssp TTTEEEECTTTHHHHHHHHHHHHTCS-S--CCC-HHHHHHHHHHHHHHS
T ss_pred CCceEEEEeCCHHHHHHHHHhhcCCC-C--CCc-HHHHHHHHHHHHhcc
Confidence 35666544445789999998654331 1 233 999999999999854
No 6
>d1v8ca2 d.129.5.1 (A:88-165) MoaD-related protein, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=9.65 E-value=57 Score=22.28 Aligned_cols=13 Identities=15% Similarity=0.560 Sum_probs=10.6
Q ss_pred ceeecCeEEEecc
Q 045254 297 GAFEMPSITIDDF 309 (444)
Q Consensus 297 G~L~IP~L~id~~ 309 (444)
|.|+||+|.+.-.
T Consensus 49 gsl~ip~lrveve 61 (78)
T d1v8ca2 49 GSLSIPQLRVEVE 61 (78)
T ss_dssp TTEEEEEEEEEEE
T ss_pred cceecceEEEEec
Confidence 8899999987643
No 7
>d1duxc_ a.4.5.21 (C:) Elk-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.41 E-value=1.8e+02 Score=20.70 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=28.9
Q ss_pred CCceecCCCChHHHHHHHHhhhcccccCCCCcchHHHHHHHHhHhcCc
Q 045254 354 RNIITNYLGKPAEVERFIYNLEKDVAFDVDRCYLSSLFKDVHDYYCYS 401 (444)
Q Consensus 354 ~GII~n~lgsdeeva~lfn~L~~~~~~~~~~~y~~~v~~~ln~~~~~r 401 (444)
+|++. +-+.++||+++-.- |+ .+.-+ |.++...+..||++.
T Consensus 27 ~g~Fk--lv~~~~VA~lWG~~-Kn---k~~Mn-YeklSRaLRyyY~~~ 67 (86)
T d1duxc_ 27 GGEFK--LVDAEEVARLWGLR-KN---KTNMN-YDKLSRALRYYYDKN 67 (86)
T ss_dssp TTEEE--CTTHHHHHHHHHHT-TT---CSCCC-HHHHHHHHHHHHTTT
T ss_pred CCEEE--ecCHHHHHHHHHhc-cC---CCCCC-HHHHHHHHHHHHhcc
Confidence 45554 34678999999644 33 11334 999999999999864
No 8
>d2outa1 a.140.3.2 (A:94-131) Uncharacterized protein HI1507 in Mu-like prophage FluMu region {Haemophilus influenzae [TaxId: 727]}
Probab=9.11 E-value=44 Score=19.62 Aligned_cols=15 Identities=27% Similarity=0.505 Sum_probs=12.0
Q ss_pred HHHHhcCcEEEeCCC
Q 045254 272 SKLLYAGINFNAAPA 286 (444)
Q Consensus 272 teL~~aGV~Fk~~~~ 286 (444)
.+|-+.||.||.+.+
T Consensus 6 aqltergitfkqsat 20 (38)
T d2outa1 6 AQLTERGITFKQSAT 20 (38)
T ss_dssp HHHHHHTCCCSSSCC
T ss_pred HHHHHcCceeeccch
Confidence 478899999998754
No 9
>d2pfxa1 a.152.1.3 (A:1-190) Uncharacterized protein TM1040_2465 {Silicibacter sp. tm1040 [TaxId: 292414]}
Probab=8.36 E-value=1e+02 Score=24.75 Aligned_cols=52 Identities=12% Similarity=0.082 Sum_probs=32.3
Q ss_pred ccchHHHHHhh--hcCChhhHHHHHhCCceecCCCChHHHH---------HHHHhhhcccccCCCCcch
Q 045254 330 HFSVYASLLGS--LVNTSTDVEHLCDRNIITNYLGKPAEVE---------RFIYNLEKDVAFDVDRCYL 387 (444)
Q Consensus 330 ~vtsYv~fM~~--LI~t~eDV~lL~~~GII~n~lgsdeeva---------~lfn~L~~~~~~~~~~~y~ 387 (444)
.+..|+.=+.. ---+++|++.|++.|- ||+++. +++|++.......+++.|+
T Consensus 124 all~~a~~l~~~~~~v~d~~~~~L~~~G~------sd~eI~el~~~ia~~~~~nr~~~~lgv~pd~e~~ 186 (190)
T d2pfxa1 124 VMLDFAAKMTRASAEIEEADREVLRSHGF------NDRDIWDIANVTGFFNMTNRVASATAMMPNAEYH 186 (190)
T ss_dssp HHHHHHHHHHHHGGGCCHHHHHHHHHTTC------CHHHHHHHHHHHHHHHHHHHHHHHHTCCCCGGGG
T ss_pred HHHHHHHHHHhCcCCCCHHHHHHHHHCCC------CHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 45556555532 2347899999999883 666655 5566666665555555533
No 10
>d1yo5c1 a.4.5.21 (C:247-334) Sam pointed domain containing ets transcription SPDEF {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.23 E-value=1.8e+02 Score=20.81 Aligned_cols=42 Identities=17% Similarity=0.272 Sum_probs=29.1
Q ss_pred hCCceecCCCChHHHHHHHHhhhcccccCCCCcchHHHHHHHHhHhcCc
Q 045254 353 DRNIITNYLGKPAEVERFIYNLEKDVAFDVDRCYLSSLFKDVHDYYCYS 401 (444)
Q Consensus 353 ~~GII~n~lgsdeeva~lfn~L~~~~~~~~~~~y~~~v~~~ln~~~~~r 401 (444)
++|++. +-+.++||+++-.--..- +-+ |.++...+..||++.
T Consensus 29 ~~g~Fk--l~~~~~VA~lWG~~Knk~----~M~-YeklSRALRyYY~~~ 70 (88)
T d1yo5c1 29 EKGIFK--IEDSAQVARLWGIRKNRP----AMN-YDKLSRSIRQYYKKG 70 (88)
T ss_dssp TTTEEE--ESCHHHHHHHHHHHHTCT----TCC-HHHHHHHHHHTTTTT
T ss_pred CCceEE--ecCHHHHHHHHHHhhcCC----CCC-HHHHHHHHHHHHhcc
Confidence 445554 246789999996543221 334 999999999999764
Done!