BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045257
(107 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O15116|LSM1_HUMAN U6 snRNA-associated Sm-like protein LSm1 OS=Homo sapiens GN=LSM1
PE=1 SV=1
Length = 133
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/90 (57%), Positives = 62/90 (68%), Gaps = 1/90 (1%)
Query: 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLIGE 60
K LVLLRDGR L+G LRS DQFAN+VL ERI VG Y DIP G++V+RGENVVL+GE
Sbjct: 17 KHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLGE 76
Query: 61 LDLEKEELPAHMTCVSTAEIKRAQKAEKDA 90
+DLEKE + VS EI Q+ E+
Sbjct: 77 IDLEKES-DTPLQQVSIEEILEEQRVEQQT 105
>sp|Q5E9Z8|LSM1_BOVIN U6 snRNA-associated Sm-like protein LSm1 OS=Bos taurus GN=LSM1 PE=2
SV=1
Length = 133
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 52/90 (57%), Positives = 62/90 (68%), Gaps = 1/90 (1%)
Query: 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLIGE 60
K LVLLRDGR L+G LRS DQFAN+VL ERI VG Y DIP G++V+RGENVVL+GE
Sbjct: 17 KHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLGE 76
Query: 61 LDLEKEELPAHMTCVSTAEIKRAQKAEKDA 90
+DLEKE + VS EI Q+ E+
Sbjct: 77 IDLEKES-DTPLQQVSIEEILEEQRVEQQT 105
>sp|Q8VC85|LSM1_MOUSE U6 snRNA-associated Sm-like protein LSm1 OS=Mus musculus GN=Lsm1
PE=2 SV=1
Length = 133
Score = 96.7 bits (239), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 51/90 (56%), Positives = 62/90 (68%), Gaps = 1/90 (1%)
Query: 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLIGE 60
K LVLLRDGR L+G LRS DQFAN+VL ERI VG Y DIP G++V+RGENVVL+GE
Sbjct: 17 KHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVLLGE 76
Query: 61 LDLEKEELPAHMTCVSTAEIKRAQKAEKDA 90
+DLEKE + VS EI Q+ ++
Sbjct: 77 IDLEKES-DTPLQQVSIEEILEEQRVQQQT 105
>sp|Q54W83|LSM1_DICDI Probable U6 snRNA-associated Sm-like protein LSm1
OS=Dictyostelium discoideum GN=lsm1 PE=3 SV=1
Length = 129
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/83 (53%), Positives = 62/83 (74%)
Query: 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLIGE 60
K++V+LRDGRK +G++R+FDQFAN+VL+ ERI VGD Y D LGL+ IRG+NVV++GE
Sbjct: 12 KLIVVLRDGRKFIGIMRTFDQFANIVLQDTIERIYVGDCYSDKNLGLFFIRGDNVVILGE 71
Query: 61 LDLEKEELPAHMTCVSTAEIKRA 83
+D +KE + +S EI +A
Sbjct: 72 IDPDKEVQEKKLKKISWDEITKA 94
>sp|P87173|LSM1_SCHPO U6 snRNA-associated Sm-like protein LSm1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm1 PE=3 SV=1
Length = 140
Score = 94.7 bits (234), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/66 (65%), Positives = 58/66 (87%)
Query: 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLIGE 60
K++V+LRDG+KL+G+LRSFDQFAN++L+ ERI V D+Y DI G+Y++RGENVVL+GE
Sbjct: 23 KVIVVLRDGKKLIGILRSFDQFANLMLQYTIERIYVDDMYGDIDRGVYIVRGENVVLLGE 82
Query: 61 LDLEKE 66
LDL+KE
Sbjct: 83 LDLDKE 88
>sp|P47017|LSM1_YEAST Sm-like protein LSm1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=LSM1 PE=1 SV=1
Length = 172
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 54/71 (76%), Gaps = 2/71 (2%)
Query: 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVG--DLYCDIPLGLYVIRGENVVLI 58
KI VLLRDGR L G+LR+FDQ+AN++L+ ERI + Y + G+++IRGENVV++
Sbjct: 53 KIFVLLRDGRMLFGVLRTFDQYANLILQDCVERIYFSEENKYAEEDRGIFMIRGENVVML 112
Query: 59 GELDLEKEELP 69
GE+D++KE+ P
Sbjct: 113 GEVDIDKEDQP 123
>sp|Q1ZXD5|NAA38_DICDI N-alpha-acetyltransferase 38, NatC auxiliary subunit
OS=Dictyostelium discoideum GN=lsm8 PE=3 SV=1
Length = 94
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 44/64 (68%)
Query: 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLIGE 60
++LVL DGR ++G LR DQ NVVLE ER+ + IPLG+++I+G++V +IGE
Sbjct: 11 QVLVLTADGRSIIGTLRGIDQTINVVLEKCHERVYSDEGIEVIPLGVHLIKGDDVAVIGE 70
Query: 61 LDLE 64
+D E
Sbjct: 71 VDDE 74
>sp|O74483|LSM8_SCHPO U6 snRNA-associated Sm-like protein LSm8 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm8 PE=3 SV=1
Length = 94
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 46/71 (64%), Gaps = 5/71 (7%)
Query: 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCD-IPLGLYVIRGENVVLIG 59
++ V+ DGR +LG L+ FD N++L + ERII D + IPLG+Y++RGENV ++G
Sbjct: 10 RVQVITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDMETIPLGVYLLRGENVAMVG 69
Query: 60 ----ELDLEKE 66
ELD E E
Sbjct: 70 LVNEELDSEIE 80
>sp|Q5RCP3|NAA38_PONAB N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Pongo
abelii GN=NAA38 PE=3 SV=3
Length = 96
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCD-IPLGLYVIRGENVVLIG 59
+ V+ DGR ++G L+ FDQ N++L+ + ER+ + + LGLY++RG+NV +IG
Sbjct: 12 TVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIG 71
Query: 60 ELDLEKE 66
E+D E +
Sbjct: 72 EIDEETD 78
>sp|Q6ZWM4|NAA38_MOUSE N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Mus
musculus GN=Naa38 PE=3 SV=3
Length = 96
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCD-IPLGLYVIRGENVVLIG 59
+ V+ DGR ++G L+ FDQ N++L+ + ER+ + + LGLY++RG+NV +IG
Sbjct: 12 TVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIG 71
Query: 60 ELDLEKE 66
E+D E +
Sbjct: 72 EIDEETD 78
>sp|O95777|NAA38_HUMAN N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Homo
sapiens GN=NAA38 PE=1 SV=3
Length = 96
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCD-IPLGLYVIRGENVVLIG 59
+ V+ DGR ++G L+ FDQ N++L+ + ER+ + + LGLY++RG+NV +IG
Sbjct: 12 TVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIG 71
Query: 60 ELDLEKE 66
E+D E +
Sbjct: 72 EIDEETD 78
>sp|Q3ZCE0|NAA38_BOVIN N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Bos
taurus GN=NAA38 PE=3 SV=3
Length = 96
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCD-IPLGLYVIRGENVVLIG 59
+ V+ DGR ++G L+ FDQ N++L+ + ER+ + + LGLY++RG+NV +IG
Sbjct: 12 TVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRGDNVAVIG 71
Query: 60 ELDLEKE 66
E+D E +
Sbjct: 72 EIDEETD 78
>sp|O74966|RUXG_SCHPO Small nuclear ribonucleoprotein G OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=smg1 PE=1 SV=1
Length = 77
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLIGE 60
++ V L RK+ G+LR +D F N+VLE + E + G+ + +G IRG +V++I
Sbjct: 16 QVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGE---KVKIGSVAIRGNSVIMIET 72
Query: 61 LD 62
LD
Sbjct: 73 LD 74
>sp|O74499|LSM7_SCHPO U6 snRNA-associated Sm-like protein LSm7 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=lsm7 PE=1 SV=1
Length = 113
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIV---GDLYCDI-PLGLYVIRGENVV 56
+I GR++ G+L+ FDQ N+VL+ E++ G L I LGL V+RG +V
Sbjct: 35 RIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTLV 94
Query: 57 LIGELDLEKEELP 69
LI +D EE+P
Sbjct: 95 LIAPMD-GSEEIP 106
>sp|P24715|RUXG_MEDSA Probable small nuclear ribonucleoprotein G OS=Medicago sativa
GN=C29 PE=3 SV=1
Length = 81
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 4/57 (7%)
Query: 6 LRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLIGELD 62
L+ R ++G LR FDQF N+V++ E + G+ DI G+ VIRG +VV + L+
Sbjct: 22 LKANRMIVGTLRGFDQFMNLVVDNTVE--VNGNEKNDI--GMVVIRGNSVVTVEALE 74
>sp|Q9VXE0|RUXG_DROME Probable small nuclear ribonucleoprotein G OS=Drosophila
melanogaster GN=SmG PE=3 SV=1
Length = 76
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLIGE 60
++++ L GR + G+LR FD F NVVL+ E +G+ VIRG ++V++
Sbjct: 16 RMMLKLNGGRAVTGILRGFDPFMNVVLDDTVEEC---KDNTKNNIGMVVIRGNSIVMVEA 72
Query: 61 LD 62
LD
Sbjct: 73 LD 74
>sp|O82221|RUXG_ARATH Probable small nuclear ribonucleoprotein G OS=Arabidopsis
thaliana GN=At2g23930 PE=2 SV=1
Length = 80
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLIGE 60
K+ + L R + G LR FDQF N+V++ E + G+ DI G+ VIRG ++V +
Sbjct: 17 KLQIKLNANRMVTGTLRGFDQFMNLVVDNTVE--VNGNDKTDI--GMVVIRGNSIVTVEA 72
Query: 61 LD 62
L+
Sbjct: 73 LE 74
>sp|Q9N4G9|RUXG_CAEEL Probable small nuclear ribonucleoprotein G OS=Caenorhabditis
elegans GN=snr-7 PE=3 SV=1
Length = 77
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 3/53 (5%)
Query: 6 LRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLI 58
L R++ G+LR FD F N+V++ A E G + LG+ VIRG +VV++
Sbjct: 21 LNGNRRVSGILRGFDPFMNMVIDEAVEYQKDG---GSVNLGMTVIRGNSVVIM 70
>sp|P40204|RUXG_YEAST Small nuclear ribonucleoprotein G OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SMX2 PE=1 SV=1
Length = 77
Score = 37.4 bits (85), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVG-DLYCDIPLGL-YVIRGENVVLI 58
KIL+ + RK+ G+LR +D F NVVL+ A E I G D + LGL VIRG +++ +
Sbjct: 14 KILLNINGSRKVAGILRGYDIFLNVVLDDAME--INGEDPANNHQLGLQTVIRGNSIISL 71
Query: 59 GELD 62
LD
Sbjct: 72 EALD 75
>sp|Q54RX0|RUXG_DICDI Probable small nuclear ribonucleoprotein G OS=Dictyostelium
discoideum GN=snrpG PE=3 SV=1
Length = 85
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLIGE 60
K+ + L R + G+LR FD F N+ L+ E + + Y +G+ +IRG +++L+
Sbjct: 18 KLAIKLNGNRTVHGILRGFDTFMNIALKDTVEVVSPTEKY---EIGMVIIRGNSILLMEP 74
Query: 61 LD 62
L+
Sbjct: 75 LE 76
>sp|P62309|RUXG_MOUSE Small nuclear ribonucleoprotein G OS=Mus musculus GN=Snrpg PE=1
SV=1
Length = 76
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLIGE 60
K+ + L GR + G+LR FD F N+V++ E G +G+ VIRG +++++
Sbjct: 16 KLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNN---IGMVVIRGNSIIMLEA 72
Query: 61 LD 62
L+
Sbjct: 73 LE 74
>sp|P62308|RUXG_HUMAN Small nuclear ribonucleoprotein G OS=Homo sapiens GN=SNRPG PE=1
SV=1
Length = 76
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLIGE 60
K+ + L GR + G+LR FD F N+V++ E G +G+ VIRG +++++
Sbjct: 16 KLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNN---IGMVVIRGNSIIMLEA 72
Query: 61 LD 62
L+
Sbjct: 73 LE 74
>sp|Q3ZBL0|RUXG_BOVIN Small nuclear ribonucleoprotein G OS=Bos taurus GN=SNRPG PE=3
SV=1
Length = 76
Score = 36.6 bits (83), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLIGE 60
K+ + L GR + G+LR FD F N+V++ E G +G+ VIRG +++++
Sbjct: 16 KLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNN---IGMVVIRGNSIIMLEA 72
Query: 61 LD 62
L+
Sbjct: 73 LE 74
>sp|P40089|LSM5_YEAST U6 snRNA-associated Sm-like protein LSm5 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM5 PE=1
SV=1
Length = 93
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERII 35
K+L++L+ R+ G L FD F NV+LE A E +I
Sbjct: 19 KVLIVLQSNREFEGTLVGFDDFVNVILEDAVEWLI 53
>sp|Q54NC5|SMD2_DICDI Probable small nuclear ribonucleoprotein Sm D2 OS=Dictyostelium
discoideum GN=snrpd2 PE=3 SV=1
Length = 112
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 30/44 (68%), Gaps = 6/44 (13%)
Query: 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIP 44
++L+ +R+ +KLLG +R+FD+ N+VLE V +++ ++P
Sbjct: 32 QVLINVRNNKKLLGRVRAFDRHCNMVLEN------VKEIWTEVP 69
>sp|Q9YEQ5|RUXX_AERPE Putative snRNP Sm-like protein OS=Aeropyrum pernix (strain ATCC
700893 / DSM 11879 / JCM 9820 / NBRC 100138 / K1)
GN=APE_0525a PE=3 SV=1
Length = 77
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 38/58 (65%), Gaps = 4/58 (6%)
Query: 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLI 58
+LV L+ G ++ G+L+++DQ N++L A E +G+ LGL ++RG++VV+I
Sbjct: 20 PVLVKLKSGLRIKGVLKTYDQHLNIILGDAEE---IGETSIR-RLGLTLVRGDSVVVI 73
>sp|Q9CQQ8|LSM7_MOUSE U6 snRNA-associated Sm-like protein LSm7 OS=Mus musculus GN=Lsm7
PE=3 SV=1
Length = 103
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 2 ILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIP-----LGLYVIRGENVV 56
I V + GR+ G+L+ FD N+VL+G E + D + LGL V RG +VV
Sbjct: 23 IRVKFQGGREASGILKGFDPLLNLVLDGTMEYMRDPDDQYKLTEDTRQLGLVVCRGTSVV 82
Query: 57 LI 58
LI
Sbjct: 83 LI 84
>sp|Q9UK45|LSM7_HUMAN U6 snRNA-associated Sm-like protein LSm7 OS=Homo sapiens GN=LSM7
PE=1 SV=1
Length = 103
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 5/62 (8%)
Query: 2 ILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIP-----LGLYVIRGENVV 56
I V + GR+ G+L+ FD N+VL+G E + D + LGL V RG +VV
Sbjct: 23 IRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRGTSVV 82
Query: 57 LI 58
LI
Sbjct: 83 LI 84
>sp|Q18786|SMD2_CAEEL Probable small nuclear ribonucleoprotein Sm D2 OS=Caenorhabditis
elegans GN=snr-4 PE=1 SV=1
Length = 118
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 29/44 (65%), Gaps = 6/44 (13%)
Query: 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIP 44
++L+ R+ +KLLG +++FD+ N+VLE V +++ ++P
Sbjct: 41 QVLINCRNNKKLLGRVKAFDRHCNMVLEN------VKEMWTEVP 78
>sp|A8MWD9|RUXGL_HUMAN Small nuclear ribonucleoprotein G-like protein OS=Homo sapiens
PE=2 SV=2
Length = 76
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
Query: 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLIGE 60
K + L GR + G+LR FD F N+V++ E G +G+ IRG +++++
Sbjct: 16 KFSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQKN---IGMVEIRGNSIIMLEA 72
Query: 61 LD 62
L+
Sbjct: 73 LE 74
>sp|B7VM91|STHA_VIBSL Soluble pyridine nucleotide transhydrogenase OS=Vibrio splendidus
(strain LGP32) GN=sthA PE=3 SV=1
Length = 466
Score = 33.1 bits (74), Expect = 0.56, Method: Composition-based stats.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 18 SFDQ---FANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLIGELDLEKEELPAHMTC 74
++DQ A V++G ER ++ D IP G+Y I + V E +L ++P +
Sbjct: 322 AYDQGRFVAQAVVKGEAERHLIED----IPTGIYTIPEISSVGKTEQELTAAKVPYEVGR 377
Query: 75 VSTAEIKRAQKAEKDATVLK 94
S + RAQ A KD LK
Sbjct: 378 SSFKHLARAQIAGKDIGSLK 397
>sp|C5A1H1|RUXX_THEGJ Putative snRNP Sm-like protein OS=Thermococcus gammatolerans
(strain DSM 15229 / JCM 11827 / EJ3) GN=TGAM_1738 PE=3
SV=1
Length = 76
Score = 33.1 bits (74), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Query: 2 ILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLIGEL 61
+LVLL+ G + G L +D NVVL GA + I G++ G V+RG+NV+ I +
Sbjct: 17 VLVLLKRGGEFRGKLIGYDIHLNVVLAGA-DYIQDGEVVK--SYGKIVVRGDNVLAISPV 73
Query: 62 DLE 64
D+E
Sbjct: 74 DIE 76
>sp|Q12330|RUXE_YEAST Small nuclear ribonucleoprotein E OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SME1 PE=1 SV=1
Length = 94
Score = 32.7 bits (73), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 9 GRKLLGLLRSFDQFANVVLEGACERIIVG-----DLYCDIPLGLYVIRGENVVLIGELD 62
G ++ G + FD+F NVV++ A E + D+ PLG +++G+N+ LI D
Sbjct: 36 GIRIKGKIVGFDEFMNVVIDEAVEIPVNSADGKEDVEKGTPLGKILLKGDNITLITSAD 94
>sp|Q9VI10|SMD2_DROME Probable small nuclear ribonucleoprotein Sm D2 OS=Drosophila
melanogaster GN=SmD2 PE=3 SV=1
Length = 119
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 29/44 (65%), Gaps = 6/44 (13%)
Query: 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIP 44
++L+ R+ +KLLG +++FD+ N+VLE V +++ ++P
Sbjct: 40 QVLINCRNNKKLLGRVKAFDRHCNMVLEN------VKEMWTELP 77
>sp|P57743|LSM3_YEAST U6 snRNA-associated Sm-like protein LSm3 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM3 PE=1
SV=1
Length = 89
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%)
Query: 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERI 34
++ + LR R L+G L++FD N+VL A E I
Sbjct: 15 RVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETI 48
>sp|Q05856|RSMB_DROME Small nuclear ribonucleoprotein-associated protein B
OS=Drosophila melanogaster GN=SmB PE=1 SV=1
Length = 199
Score = 32.3 bits (72), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 9/64 (14%)
Query: 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERI-IVGDLYCDIP-------LGLYVIRG 52
++ ++L+D R +G ++FD+ N++L G CE + +P LG ++RG
Sbjct: 16 RVRIVLQDSRTFIGTFKAFDKHMNLIL-GDCEEFRKIRSKNSKVPEREEKRVLGFVLLRG 74
Query: 53 ENVV 56
EN+V
Sbjct: 75 ENIV 78
>sp|P57670|RUXX_THEAC Putative snRNP Sm-like protein OS=Thermoplasma acidophilum
(strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 /
AMRC-C165) GN=Ta1240 PE=3 SV=1
Length = 83
Score = 32.0 bits (71), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 9/61 (14%)
Query: 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIPLGLY---VIRGENVVL 57
+L+ ++ R+ G+L +D + N+VL+ A E II G+ G+Y ++RG+NV+
Sbjct: 21 NVLIDVKGNREYSGILEGYDVYMNIVLQNASE-IINGE-----NKGVYDRVLVRGDNVIF 74
Query: 58 I 58
+
Sbjct: 75 V 75
>sp|O26745|RUXX_METTH Putative snRNP Sm-like protein OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=MTH_649 PE=1 SV=1
Length = 81
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 2 ILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLI 58
+++ L+ R+ G+L+SFD N+VL A E + D LG +IRG+N+V I
Sbjct: 26 VIIKLKGDREFRGVLKSFDLHMNLVLNDAEE---LEDGEVTRRLGTVLIRGDNIVYI 79
>sp|P62317|SMD2_MOUSE Small nuclear ribonucleoprotein Sm D2 OS=Mus musculus GN=Snrpd2
PE=2 SV=1
Length = 118
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 23/32 (71%)
Query: 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACE 32
++L+ R+ +KLLG +++FD+ N+VLE E
Sbjct: 41 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 72
>sp|P62316|SMD2_HUMAN Small nuclear ribonucleoprotein Sm D2 OS=Homo sapiens GN=SNRPD2
PE=1 SV=1
Length = 118
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 23/32 (71%)
Query: 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACE 32
++L+ R+ +KLLG +++FD+ N+VLE E
Sbjct: 41 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 72
>sp|Q3SZF8|SMD2_BOVIN Small nuclear ribonucleoprotein Sm D2 OS=Bos taurus GN=SNRPD2
PE=3 SV=1
Length = 118
Score = 31.6 bits (70), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 23/32 (71%)
Query: 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACE 32
++L+ R+ +KLLG +++FD+ N+VLE E
Sbjct: 41 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKE 72
>sp|Q59056|Y1662_METJA Uncharacterized ABC transporter ATP-binding protein MJ1662
OS=Methanocaldococcus jannaschii (strain ATCC 43067 /
DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1662
PE=3 SV=2
Length = 555
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 13/69 (18%)
Query: 11 KLLGLLRSFDQFANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLIGELDLEKEELPA 70
KL+GL D FAN++ G +R+I+G I +GE V+L+ E PA
Sbjct: 125 KLVGLEHKKDAFANILSGGEKQRLILGRQIAKI-----YEKGEGVLLLDE--------PA 171
Query: 71 HMTCVSTAE 79
M C ++ +
Sbjct: 172 TMACPASKQ 180
>sp|B6YUU5|RUXX_THEON Putative snRNP Sm-like protein OS=Thermococcus onnurineus (strain
NA1) GN=TON_0644 PE=3 SV=1
Length = 78
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 2 ILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLIGEL 61
+LV+L+ G + G L +D N+VL GA E I G++ G VIRG+NV+ I +
Sbjct: 17 VLVILKKGFEFRGKLIGYDIHLNIVLAGA-EMIQDGEVVK--KYGKIVIRGDNVLAISPV 73
Query: 62 DLEKE 66
D+ E
Sbjct: 74 DVGVE 78
>sp|P53905|LSM7_YEAST U6 snRNA-associated Sm-like protein LSm7 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=LSM7 PE=1
SV=2
Length = 115
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 8/60 (13%)
Query: 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDI--------PLGLYVIRG 52
KI V L G+ ++G+L+ +DQ N+VL+ E + D + LGL VIRG
Sbjct: 37 KIRVKLMGGKLVIGVLKGYDQLMNLVLDDTVEYMSNPDDENNTELISKNARKLGLTVIRG 96
>sp|P91918|RSMB_CAEEL Probable small nuclear ribonucleoprotein-associated protein B
OS=Caenorhabditis elegans GN=snr-2 PE=3 SV=1
Length = 160
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 27/73 (36%)
Query: 1 KILVLLRDGRKLLGLLRSFDQFANVVL-----------------EGACERIIVGDLYCDI 43
++ ++L+DGR +G ++FD+ N++L +G +RI
Sbjct: 16 RMKIILQDGRTFIGFFKAFDKHMNILLAECEEHRQIKPKAGKKTDGEEKRI--------- 66
Query: 44 PLGLYVIRGENVV 56
LGL ++RGE++V
Sbjct: 67 -LGLVLVRGEHIV 78
>sp|Q97BU5|RUXX_THEVO Putative snRNP Sm-like protein OS=Thermoplasma volcanium (strain
ATCC 51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=TV0360 PE=3 SV=2
Length = 83
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%), Gaps = 9/61 (14%)
Query: 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIPLGLY---VIRGENVVL 57
+L+ ++ R+ G+L +D + NVVL+ A E II G+ G++ ++RG+NV+
Sbjct: 21 NVLIDVKGNREYSGILEGYDVYMNVVLQNASE-IINGE-----NKGVFDRILVRGDNVIF 74
Query: 58 I 58
+
Sbjct: 75 V 75
>sp|Q0W8R9|RUXX_UNCMA Putative snRNP Sm-like protein OS=Uncultured methanogenic
archaeon RC-I GN=UNCMA_29510 PE=3 SV=1
Length = 72
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 2 ILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLI 58
++V L+ GR+ G L+ +D N+VL+ A E + + LG ++RG+ VV +
Sbjct: 17 VIVRLKGGREFRGELQGYDMHMNLVLDNAEE---LKENEASRKLGTIIVRGDTVVYV 70
>sp|Q87KN5|STHA_VIBPA Soluble pyridine nucleotide transhydrogenase OS=Vibrio
parahaemolyticus serotype O3:K6 (strain RIMD 2210633)
GN=sthA PE=3 SV=1
Length = 466
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Query: 18 SFDQ---FANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLIGELDLEKEELPAHMTC 74
++DQ A + +G E ++ D IP G+Y I + V E +L ++P +
Sbjct: 322 AYDQGRFVAQAITKGQAENYLIED----IPTGIYTIPEISSVGKTEQELTAAKVPYEVGR 377
Query: 75 VSTAEIKRAQKAEKDATVLK 94
S + RAQ A KD LK
Sbjct: 378 SSFKHLARAQIAGKDVGSLK 397
>sp|O14036|SMD2_SCHPO Small nuclear ribonucleoprotein Sm D2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=smd2 PE=1 SV=1
Length = 115
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACE 32
++L+ R+ +KLL +++FD+ +N+VLE E
Sbjct: 42 QVLINCRNNKKLLARVKAFDRHSNMVLENVKE 73
>sp|A2BIG9|LSMD1_DANRE LSM domain-containing protein 1 OS=Danio rerio GN=lsmd1 PE=2 SV=1
Length = 109
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 6 LRDGRKLLGLLRSFDQFANVVLEGACERIIVGD-LYCDIP--LGLYVIRGENVVLIGELD 62
+ DGR L+GL D+ NV+L A E + D L P LGL +I G +VV I E++
Sbjct: 40 MTDGRTLVGLFLCTDRDCNVILGSAQEFLKSTDSLSQGEPRVLGLAMIPGHHVVSI-EVE 98
Query: 63 LEKEELPAH 71
E + H
Sbjct: 99 TESLQTTTH 107
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.144 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,542,130
Number of Sequences: 539616
Number of extensions: 1443631
Number of successful extensions: 4029
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 3956
Number of HSP's gapped (non-prelim): 84
length of query: 107
length of database: 191,569,459
effective HSP length: 75
effective length of query: 32
effective length of database: 151,098,259
effective search space: 4835144288
effective search space used: 4835144288
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)