Query 045257
Match_columns 107
No_of_seqs 107 out of 1090
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 20:10:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045257.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045257hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4emk_C U6 snRNA-associated SM- 99.8 2.4E-21 8.3E-26 133.8 8.0 72 1-73 35-110 (113)
2 3bw1_A SMX4 protein, U6 snRNA- 99.8 9.2E-21 3.2E-25 127.1 8.4 66 1-66 22-91 (96)
3 3s6n_G Small nuclear ribonucle 99.8 4E-20 1.4E-24 119.0 6.4 60 1-63 16-75 (76)
4 1d3b_B Protein (small nuclear 99.8 1.1E-19 3.7E-24 120.0 8.6 65 1-65 16-87 (91)
5 1h64_1 SnRNP SM-like protein; 99.8 6.9E-20 2.4E-24 117.2 7.4 60 1-63 16-75 (75)
6 4emk_A U6 snRNA-associated SM- 99.8 9.4E-20 3.2E-24 122.4 8.1 62 1-64 32-93 (94)
7 1i4k_A Putative snRNP SM-like 99.8 1.4E-19 4.7E-24 116.2 7.6 61 1-64 16-76 (77)
8 1ljo_A Archaeal SM-like protei 99.8 1.5E-19 5.2E-24 116.2 7.4 60 1-63 17-77 (77)
9 1th7_A SnRNP-2, small nuclear 99.8 1.8E-19 6.2E-24 116.9 7.7 60 1-63 21-80 (81)
10 4emk_B U6 snRNA-associated SM- 99.8 1.5E-19 5E-24 116.0 5.7 59 1-62 16-74 (75)
11 4emg_A Probable U6 snRNA-assoc 99.8 4.3E-19 1.5E-23 118.5 7.9 61 1-61 21-91 (93)
12 3s6n_E Small nuclear ribonucle 99.8 3.9E-19 1.3E-23 118.8 7.7 60 1-62 28-91 (92)
13 3s6n_F Small nuclear ribonucle 99.8 3.8E-19 1.3E-23 117.2 7.4 63 1-66 18-80 (86)
14 2fwk_A U6 snRNA-associated SM- 99.8 1.4E-19 4.9E-24 125.8 5.4 66 1-66 40-117 (121)
15 1i8f_A Putative snRNP SM-like 99.8 5E-19 1.7E-23 115.0 7.3 58 1-62 23-80 (81)
16 1mgq_A SM-like protein; LSM, R 99.8 9.1E-19 3.1E-23 114.3 7.1 57 1-60 27-83 (83)
17 1b34_B Protein (small nuclear 99.8 1.3E-18 4.5E-23 120.4 7.6 64 1-64 41-115 (118)
18 1n9r_A SMF, small nuclear ribo 99.8 1.6E-18 5.5E-23 115.9 7.1 59 1-62 33-92 (93)
19 4emh_A Probable U6 snRNA-assoc 99.7 2.5E-18 8.7E-23 117.4 7.5 64 1-66 28-91 (105)
20 1d3b_A Protein (small nuclear 99.7 5E-18 1.7E-22 109.1 7.7 59 1-62 17-75 (75)
21 3pgw_B SM B; protein-RNA compl 99.7 7.6E-18 2.6E-22 128.6 9.2 65 1-65 16-87 (231)
22 1b34_A Protein (small nuclear 99.7 1.7E-17 5.9E-22 115.0 7.4 60 1-63 14-73 (119)
23 1m5q_A SMAP3, small nuclear ri 99.7 1E-16 3.5E-21 113.1 6.2 59 1-66 12-70 (130)
24 2y9a_D Small nuclear ribonucle 99.6 4.1E-16 1.4E-20 109.4 7.3 61 1-64 17-77 (126)
25 1y96_A Gemin6, SIP2, GEM-assoc 98.2 3.4E-06 1.2E-10 55.6 6.5 57 1-66 19-76 (86)
26 1u1s_A HFQ protein; SM-like ba 96.1 0.0097 3.3E-07 38.7 4.7 27 1-28 21-47 (82)
27 2ylb_A Protein HFQ; RNA-bindin 95.9 0.014 4.7E-07 37.1 4.7 46 1-62 23-68 (74)
28 3sb2_A Protein HFQ; SM-like, R 95.9 0.014 4.8E-07 37.6 4.7 46 1-62 22-67 (79)
29 2y90_A Protein HFQ; RNA-bindin 95.5 0.021 7.3E-07 38.5 4.7 27 1-28 23-49 (104)
30 3ahu_A Protein HFQ; SM-like mo 95.3 0.03 1E-06 35.9 4.8 26 1-26 25-50 (78)
31 2qtx_A Uncharacterized protein 95.2 0.031 1E-06 35.4 4.6 25 2-26 28-52 (71)
32 1kq1_A HFQ, HOST factor for Q 94.5 0.059 2E-06 34.4 4.6 25 2-26 22-46 (77)
33 3hfo_A SSR3341 protein; HFQ, S 92.7 0.3 1E-05 30.7 5.4 45 2-60 24-68 (70)
34 3hfn_A ASL2047 protein; HFQ, S 92.5 0.64 2.2E-05 29.3 6.8 46 2-61 26-71 (72)
35 2vxe_A CG10686-PA; EDC3, CAR-1 89.8 1.7 5.8E-05 28.4 6.9 63 1-63 15-84 (88)
36 2fb7_A SM-like protein, LSM-14 88.4 1.1 3.7E-05 29.6 5.4 65 1-65 21-92 (95)
37 1ycy_A Conserved hypothetical 83.7 2.7 9.2E-05 26.1 5.0 51 1-59 18-68 (71)
38 1y96_B Gemin7, SIP3, GEM-assoc 82.8 4.6 0.00016 26.1 6.1 51 1-59 31-82 (85)
39 2vc8_A Enhancer of mRNA-decapp 82.7 5.3 0.00018 25.8 6.3 59 2-66 12-72 (84)
40 4a53_A EDC3; RNA binding prote 73.9 3.5 0.00012 28.5 3.6 51 1-65 14-66 (125)
41 3rux_A BIRA bifunctional prote 72.1 3.6 0.00012 30.9 3.7 29 2-30 227-255 (270)
42 2xk0_A Polycomb protein PCL; t 52.2 34 0.0012 21.2 4.9 21 2-22 22-42 (69)
43 4hcz_A PHD finger protein 1; p 50.9 18 0.00061 21.7 3.3 22 2-23 10-31 (58)
44 2e12_A SM-like motif, hypothet 48.4 13 0.00045 24.4 2.6 57 1-62 30-93 (101)
45 2eay_A Biotin [acetyl-COA-carb 45.9 11 0.00036 27.5 2.1 34 12-52 199-232 (233)
46 1ib8_A Conserved protein SP14. 45.4 18 0.00062 25.3 3.2 25 2-27 107-135 (164)
47 1bia_A BIRA bifunctional prote 44.5 32 0.0011 26.0 4.7 43 2-52 276-318 (321)
48 4a8c_A Periplasmic PH-dependen 40.7 30 0.001 27.2 4.2 30 1-30 89-118 (436)
49 2ej9_A Putative biotin ligase; 40.4 30 0.001 25.1 3.9 27 2-29 195-221 (237)
50 1ky9_A Protease DO, DEGP, HTRA 40.1 31 0.001 27.4 4.2 29 1-29 112-140 (448)
51 3tqm_A Ribosome-associated fac 39.8 51 0.0017 20.4 4.5 19 82-100 77-95 (96)
52 2dxu_A Biotin--[acetyl-COA-car 37.0 18 0.00061 26.4 2.2 26 2-29 192-217 (235)
53 1x4r_A PARP14 protein; WWE dom 36.6 2.1 7.1E-05 28.4 -2.7 19 13-31 34-52 (99)
54 3rkx_A Biotin-[acetyl-COA-carb 35.7 40 0.0014 25.7 4.1 27 2-29 282-308 (323)
55 4fyl_A Ribosome hibernation pr 32.6 27 0.00091 21.9 2.2 19 82-100 77-95 (95)
56 3sti_A Protease DEGQ; serine p 32.3 56 0.0019 23.7 4.2 27 1-27 89-115 (245)
57 3v26_X ORF3, ORF95, probable s 31.7 66 0.0022 20.3 4.1 20 82-101 77-96 (101)
58 3stj_A Protease DEGQ; serine p 31.1 46 0.0016 25.4 3.7 27 1-27 89-115 (345)
59 2eqj_A Metal-response element- 28.4 65 0.0022 19.7 3.3 21 2-22 20-40 (66)
60 3pv2_A DEGQ; trypsin fold, PDZ 28.2 42 0.0014 26.6 3.2 29 1-29 103-131 (451)
61 3bfm_A Biotin protein ligase-l 27.9 70 0.0024 23.0 4.1 21 8-30 200-220 (235)
62 3v2c_Y Ribosome-associated inh 25.0 99 0.0034 20.2 4.1 20 82-101 77-96 (119)
63 3lgi_A Protease DEGS; stress-s 23.3 84 0.0029 22.2 3.7 26 2-27 79-104 (237)
64 2wr8_A Putative uncharacterize 22.7 70 0.0024 24.1 3.3 21 9-29 171-191 (259)
65 1te0_A Protease DEGS; two doma 22.6 96 0.0033 22.9 4.1 27 2-28 68-94 (318)
66 1lcy_A HTRA2 serine protease; 22.1 86 0.0029 23.4 3.7 27 2-28 73-99 (325)
67 3tjo_A Serine protease HTRA1; 22.1 91 0.0031 22.0 3.7 26 2-27 89-114 (231)
68 2zbv_A Uncharacterized conserv 21.4 74 0.0025 24.0 3.2 19 9-27 167-185 (263)
69 1y8t_A Hypothetical protein RV 21.2 80 0.0027 23.4 3.4 26 2-27 66-91 (324)
No 1
>4emk_C U6 snRNA-associated SM-like protein LSM7; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_C
Probab=99.85 E-value=2.4e-21 Score=133.77 Aligned_cols=72 Identities=33% Similarity=0.538 Sum_probs=54.1
Q ss_pred CEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEcCc----eeeeeecceEEEecCcEEEEEecCccccccCCCCc
Q 045257 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGD----LYCDIPLGLYVIRGENVVLIGELDLEKEELPAHMT 73 (107)
Q Consensus 1 rV~V~L~dGr~i~G~L~gfD~~mNLvL~d~~E~~~~~~----~~~~~~lG~vlIRG~nIv~I~~~d~~~e~~~~~~~ 73 (107)
+|+|+|+|||.|.|+|.|||+||||+|+||+|++..++ ....+.+|+++|||+||++|+++|.+.+. +.||.
T Consensus 35 ~V~V~L~dGr~~~G~L~~fD~~mNLVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nIv~I~~~d~~ee~-~~p~~ 110 (113)
T 4emk_C 35 RIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVVVRGTTLVLIAPMDGSEEI-PNPFV 110 (113)
T ss_dssp EEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEC---------CCEEEEEEEEECTTTEEEEEECC-----------
T ss_pred cEEEEEeCCeEEEEEEEEEcCcccEEEeeEEEEEcCCCCcccccceeEccEEEECCCeEEEEEecCccccc-cCccc
Confidence 58999999999999999999999999999999876432 13568999999999999999999988873 55543
No 2
>3bw1_A SMX4 protein, U6 snRNA-associated SM-like protein LSM3; RNA-binding protein, SM protein, ring, HOMO octamer, mRNA processing; 2.50A {Saccharomyces cerevisiae}
Probab=99.84 E-value=9.2e-21 Score=127.09 Aligned_cols=66 Identities=30% Similarity=0.489 Sum_probs=55.6
Q ss_pred CEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEcCc----eeeeeecceEEEecCcEEEEEecCcccc
Q 045257 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGD----LYCDIPLGLYVIRGENVVLIGELDLEKE 66 (107)
Q Consensus 1 rV~V~L~dGr~i~G~L~gfD~~mNLvL~d~~E~~~~~~----~~~~~~lG~vlIRG~nIv~I~~~d~~~e 66 (107)
+|+|+|+|||.|.|+|+|||+||||+|+||.|++...+ ....+.+|.++|||+||++|++.+...+
T Consensus 22 ~V~V~Lk~gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~~r~lG~v~IRG~nVv~I~~~d~~~d 91 (96)
T 3bw1_A 22 RVYIKLRGARTLVGTLQAFDSHCNIVLSDAVETIYQLNNEELSESERRCEMVFIRGDTVTLISTPSEDDD 91 (96)
T ss_dssp EEEEEEGGGCEEEEEEEEECTTCCEEEEEEEEEEECCSTTCCCEEEEEEEEEEECGGGEEEEECCC----
T ss_pred eEEEEECCCcEEEEEEEEECCCCcEEEcCEEEEeccccccccCcceeEcCEEEECCCEEEEEEecCcccc
Confidence 58999999999999999999999999999999876432 2346889999999999999999988765
No 3
>3s6n_G Small nuclear ribonucleoprotein G; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_G 2y9c_G 2y9d_G 3cw1_G 3pgw_G* 2y9a_G
Probab=99.81 E-value=4e-20 Score=119.04 Aligned_cols=60 Identities=33% Similarity=0.659 Sum_probs=50.1
Q ss_pred CEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEcCceeeeeecceEEEecCcEEEEEecCc
Q 045257 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLIGELDL 63 (107)
Q Consensus 1 rV~V~L~dGr~i~G~L~gfD~~mNLvL~d~~E~~~~~~~~~~~~lG~vlIRG~nIv~I~~~d~ 63 (107)
+|+|.|+|||.|.|+|.|||+||||+|+||.|++..+ +.+.+|.++|||++|++|+++|.
T Consensus 16 ~V~V~Lk~gr~~~G~L~~~D~~mNlvL~~~~e~~~~~---~~~~lg~v~iRG~~I~~i~~~d~ 75 (76)
T 3s6n_G 16 KLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSG---QQNNIGMVVIRGNSIIMLEALER 75 (76)
T ss_dssp EEEEEETTTEEEEEEEEEECTTCCEEEEEEEECCCC-------CBSSEEECSSSEEEEEC---
T ss_pred eEEEEECCCcEEEEEEEEECCcceEEEeceEEEccCC---cEeEcCEEEECCCeEEEEEeccC
Confidence 5899999999999999999999999999999976443 35789999999999999998864
No 4
>1d3b_B Protein (small nuclear ribonucleoprotein associat B); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_A 2y9b_A 2y9c_A 2y9d_A
Probab=99.81 E-value=1.1e-19 Score=120.01 Aligned_cols=65 Identities=28% Similarity=0.426 Sum_probs=56.3
Q ss_pred CEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEc--C-----ceeeeeecceEEEecCcEEEEEecCccc
Q 045257 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIV--G-----DLYCDIPLGLYVIRGENVVLIGELDLEK 65 (107)
Q Consensus 1 rV~V~L~dGr~i~G~L~gfD~~mNLvL~d~~E~~~~--~-----~~~~~~~lG~vlIRG~nIv~I~~~d~~~ 65 (107)
+|+|+|+|||.|.|+|.|||+||||+|+||.|++.. . .....+.+|.++|||++|++|+..+.+.
T Consensus 16 ~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~lg~v~iRG~~I~~i~~~~~~~ 87 (91)
T 1d3b_B 16 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPP 87 (91)
T ss_dssp EEEEEETTCCEEEEEEEECCTTCCEEEEEEEEEEEECCSSTTSCCEEEEEEEEEEEECGGGEEEEEEEECCC
T ss_pred cEEEEECCCeEEEEEEEEECCCCeEEecCEEEEeeccccccccccCccEeECCEEEECCCeEEEEEcCCCCC
Confidence 589999999999999999999999999999997532 1 2345789999999999999999887654
No 5
>1h64_1 SnRNP SM-like protein; SM fold, spliceosome, snRNP core; 1.9A {Pyrococcus abyssi} SCOP: b.38.1.1 PDB: 1m8v_A*
Probab=99.81 E-value=6.9e-20 Score=117.15 Aligned_cols=60 Identities=33% Similarity=0.368 Sum_probs=52.7
Q ss_pred CEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEcCceeeeeecceEEEecCcEEEEEecCc
Q 045257 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLIGELDL 63 (107)
Q Consensus 1 rV~V~L~dGr~i~G~L~gfD~~mNLvL~d~~E~~~~~~~~~~~~lG~vlIRG~nIv~I~~~d~ 63 (107)
+|+|.|+|||.|.|+|.|||+|||++|+||.|++.. ...+.+|.++|||++|++|++.++
T Consensus 16 ~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~---~~~~~lg~v~iRG~~I~~i~~~~e 75 (75)
T 1h64_1 16 DVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDG---EVVKRYGKIVIRGDNVLAISPTEE 75 (75)
T ss_dssp EEEEEETTSEEEEEEEEEECTTCCEEEEEEEEEETT---EEEEEEEEEEECGGGEEEEEEC--
T ss_pred EEEEEECCCCEEEEEEEEEeCCCCeEEeeEEEEeeC---CceeECCEEEECCCEEEEEEeCCC
Confidence 589999999999999999999999999999998633 246889999999999999998763
No 6
>4emk_A U6 snRNA-associated SM-like protein LSM5; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_A
Probab=99.80 E-value=9.4e-20 Score=122.35 Aligned_cols=62 Identities=19% Similarity=0.334 Sum_probs=53.7
Q ss_pred CEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEcCceeeeeecceEEEecCcEEEEEecCcc
Q 045257 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLIGELDLE 64 (107)
Q Consensus 1 rV~V~L~dGr~i~G~L~gfD~~mNLvL~d~~E~~~~~~~~~~~~lG~vlIRG~nIv~I~~~d~~ 64 (107)
+|+|.|++||.|.|+|.|||+||||+|+||+|++..+. ..+.+|.++|||+||++|++..++
T Consensus 32 ~V~V~Lk~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~--~~~~lg~v~IRG~nI~~i~p~~~p 93 (94)
T 4emk_A 32 NLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTG--VTEKHSEMLLNGNGMCMLIPGGKP 93 (94)
T ss_dssp EEEEEESSSEEEEEEEEEECTTCCEEEEEEEEEETTTC--CEEEEEEEEECSTTEEEEEECC--
T ss_pred eEEEEECCCcEEEEEEEEEcccCCeEeeeEEEEecCCC--cEeEcCEEEEcCCEEEEEEeCCCC
Confidence 58999999999999999999999999999999863332 367899999999999999987553
No 7
>1i4k_A Putative snRNP SM-like protein; core snRNP domain, RNA binding protein; HET: CIT; 2.50A {Archaeoglobus fulgidus} SCOP: b.38.1.1 PDB: 1i5l_A*
Probab=99.80 E-value=1.4e-19 Score=116.16 Aligned_cols=61 Identities=31% Similarity=0.384 Sum_probs=53.5
Q ss_pred CEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEcCceeeeeecceEEEecCcEEEEEecCcc
Q 045257 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLIGELDLE 64 (107)
Q Consensus 1 rV~V~L~dGr~i~G~L~gfD~~mNLvL~d~~E~~~~~~~~~~~~lG~vlIRG~nIv~I~~~d~~ 64 (107)
+|+|.|+|||.|.|+|.|||+|||++|+||.|++... ..+.+|.++|||++|++|++.|..
T Consensus 16 ~V~V~L~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~---~~~~lg~v~iRG~~I~~i~~~d~~ 76 (77)
T 1i4k_A 16 PVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGE---VVRKVGSVVIRGDTVVFVSPAPGG 76 (77)
T ss_dssp EEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEETTE---EEEEEEEEEECGGGEEEEEECC--
T ss_pred EEEEEEcCCCEEEEEEEEEcCCCCeEEeeEEEEecCC---cEeECCEEEECCCEEEEEEeCCCC
Confidence 5899999999999999999999999999999986432 357899999999999999988753
No 8
>1ljo_A Archaeal SM-like protein AF-SM2; snRNP, core snRNP domain, RNA binding protein, unknown F; 1.95A {Archaeoglobus fulgidus} SCOP: b.38.1.1
Probab=99.80 E-value=1.5e-19 Score=116.21 Aligned_cols=60 Identities=33% Similarity=0.403 Sum_probs=52.6
Q ss_pred CEEEEEcCC-cEEEEEEEEeccccceEEcceEEEEEcCceeeeeecceEEEecCcEEEEEecCc
Q 045257 1 KILVLLRDG-RKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLIGELDL 63 (107)
Q Consensus 1 rV~V~L~dG-r~i~G~L~gfD~~mNLvL~d~~E~~~~~~~~~~~~lG~vlIRG~nIv~I~~~d~ 63 (107)
+|+|.|++| |+|.|+|.|||+|||++|+||.|++. +. ..+.+|.++|||+||++|++.|+
T Consensus 17 ~v~V~lk~g~~~~~G~L~~~D~~mNlvL~d~~e~~~-~~--~~~~lg~v~iRG~nI~~i~~~de 77 (77)
T 1ljo_A 17 IIRVEMKGEENQLVGKLEGVDDYMNLYLTNAMECKG-EE--KVRSLGEIVLRGNNVVLIQPQEE 77 (77)
T ss_dssp EEEEEETTCSSEEEEEEEEECTTCCEEEEEEEEEET-TE--EEEEEEEEEECGGGEEEEEEC--
T ss_pred EEEEEEeCCCEEEEEEEEEECCcceEEEeeEEEEec-CC--cEeECCeEEEeCCeEEEEEeCCC
Confidence 589999999 99999999999999999999999863 32 36789999999999999998763
No 9
>1th7_A SnRNP-2, small nuclear riboprotein protein; archaea, SM protein, SM fold, SS-SM1, RNA binding protein; 1.68A {Sulfolobus solfataricus} SCOP: b.38.1.1
Probab=99.79 E-value=1.8e-19 Score=116.94 Aligned_cols=60 Identities=42% Similarity=0.617 Sum_probs=52.9
Q ss_pred CEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEcCceeeeeecceEEEecCcEEEEEecCc
Q 045257 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLIGELDL 63 (107)
Q Consensus 1 rV~V~L~dGr~i~G~L~gfD~~mNLvL~d~~E~~~~~~~~~~~~lG~vlIRG~nIv~I~~~d~ 63 (107)
+|+|.|+|||.|.|+|.|||+|||++|+||.|++... ..+.+|.++|||++|++|++.|.
T Consensus 21 ~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~---~~~~lg~v~iRG~~I~~i~~~~~ 80 (81)
T 1th7_A 21 LVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDG---SGKKLGTIVIRGDNVILISPLQT 80 (81)
T ss_dssp EEEEEETTTEEEEEEEEEECTTCCEEEEEEEEECSSS---CEEEEEEEEECGGGEEEEEEC--
T ss_pred eEEEEEcCCcEEEEEEEEEcCCCCEEEccEEEEecCC---ceeECCEEEECCCEEEEEEecCC
Confidence 5899999999999999999999999999999986433 35789999999999999998764
No 10
>4emk_B U6 snRNA-associated SM-like protein LSM6; SM fold, mRNA decay and PRE-mRNA splicing, LSM proteins, RNA protein; 2.30A {Schizosaccharomyces pombe} PDB: 3swn_B
Probab=99.78 E-value=1.5e-19 Score=115.98 Aligned_cols=59 Identities=34% Similarity=0.521 Sum_probs=52.3
Q ss_pred CEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEcCceeeeeecceEEEecCcEEEEEecC
Q 045257 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLIGELD 62 (107)
Q Consensus 1 rV~V~L~dGr~i~G~L~gfD~~mNLvL~d~~E~~~~~~~~~~~~lG~vlIRG~nIv~I~~~d 62 (107)
+|+|.|+|||+|.|+|.|||+||||+|+||.|+. ++. ..+.+|.++|||++|++|+++|
T Consensus 16 ~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~-~~~--~~~~lg~v~iRG~~I~~i~~~~ 74 (75)
T 4emk_B 16 KVLIRLSSGVDYKGILSCLDGYMNLALERTEEYV-NGK--KTNVYGDAFIRGNNVLYVSALD 74 (75)
T ss_dssp EEEEECTTSCEEEEEEEEECTTCEEEEEEEEEEE-TTE--EEEEEEEEEEEGGGSSEEEEC-
T ss_pred eEEEEEcCCcEEEEEEEEEcCcceEEEccEEEEe-cCC--cccEecEEEEcCCeEEEEEecC
Confidence 5899999999999999999999999999999975 332 3578999999999999999875
No 11
>4emg_A Probable U6 snRNA-associated SM-like protein LSM3; SM fold, mRNA decay, LSM proteins, RNA binding protein; 2.70A {Schizosaccharomyces pombe}
Probab=99.78 E-value=4.3e-19 Score=118.52 Aligned_cols=61 Identities=30% Similarity=0.436 Sum_probs=52.5
Q ss_pred CEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEc----Cc------eeeeeecceEEEecCcEEEEEec
Q 045257 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIV----GD------LYCDIPLGLYVIRGENVVLIGEL 61 (107)
Q Consensus 1 rV~V~L~dGr~i~G~L~gfD~~mNLvL~d~~E~~~~----~~------~~~~~~lG~vlIRG~nIv~I~~~ 61 (107)
+|+|.|++||.|.|+|.|||+||||+|+||+|++.. ++ ....+.+|+++|||+||++|++.
T Consensus 21 ~V~V~l~~gr~~~G~L~~~D~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~r~lG~v~iRG~nVv~I~p~ 91 (93)
T 4emg_A 21 IVYVKLRGDRELNGRLHAYDEHLNMVLGDAEEIVTIFDDEETDKDKALKTIRKHYEMLFVRGDSVILIAPP 91 (93)
T ss_dssp EEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEEC--------------CEEEEEEEEEECGGGEEEEECC
T ss_pred EEEEEECCCcEEEEEEEEECCcccEEeecEEEEEeccccCCccccccccccEeEeceEEECCCeEEEEEec
Confidence 589999999999999999999999999999998753 21 12468999999999999999973
No 12
>3s6n_E Small nuclear ribonucleoprotein E; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_E 2y9c_E 2y9d_E 3cw1_E 3pgw_E* 2y9a_E
Probab=99.78 E-value=3.9e-19 Score=118.80 Aligned_cols=60 Identities=22% Similarity=0.404 Sum_probs=52.0
Q ss_pred CEEEEE----cCCcEEEEEEEEeccccceEEcceEEEEEcCceeeeeecceEEEecCcEEEEEecC
Q 045257 1 KILVLL----RDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLIGELD 62 (107)
Q Consensus 1 rV~V~L----~dGr~i~G~L~gfD~~mNLvL~d~~E~~~~~~~~~~~~lG~vlIRG~nIv~I~~~d 62 (107)
+|+|++ ++||+|.|+|.|||+||||+|+||+|++.+++ ..+.+|.++|||+||++|++.+
T Consensus 28 ~v~V~l~~~~~~gr~~~G~L~gfD~~mNlvL~d~~E~~~~~~--~~~~lg~v~iRG~nV~~i~~~~ 91 (92)
T 3s6n_E 28 RSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTK--SRKQLGRIMLKGDNITLLQSVS 91 (92)
T ss_dssp TCEEEEEESSSCSSEEEEEEEEECTTCCEEEEEEEEECSSSC--CEEEEEEEEECGGGEEEEEEC-
T ss_pred CEEEEEEEEecCCEEEEEEEEEEcCcCcEEEeeeEEEecCCC--ceeEcCeEEEeCCEEEEEEeCC
Confidence 467777 99999999999999999999999999864432 3678999999999999999875
No 13
>3s6n_F Small nuclear ribonucleoprotein F; SMN complex, SMN-gemin2 complex, U-rich snRNA, SM fold, SM C SNRNPS, snRNP biogenesis, PRE-mRNA splicing; 2.50A {Homo sapiens} PDB: 2y9b_F 2y9c_F 2y9d_F 3cw1_F 3pgw_F* 2y9a_F
Probab=99.78 E-value=3.8e-19 Score=117.19 Aligned_cols=63 Identities=33% Similarity=0.409 Sum_probs=53.4
Q ss_pred CEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEcCceeeeeecceEEEecCcEEEEEecCcccc
Q 045257 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLIGELDLEKE 66 (107)
Q Consensus 1 rV~V~L~dGr~i~G~L~gfD~~mNLvL~d~~E~~~~~~~~~~~~lG~vlIRG~nIv~I~~~d~~~e 66 (107)
+|+|.|+||+.|.|+|.|||+||||+|++|.|+. +++ ..+.+|.++|||++|++|++.|...+
T Consensus 18 ~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~-~g~--~~~~lg~v~IRG~nI~~i~~~d~~~~ 80 (86)
T 3s6n_F 18 PVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYI-DGA--LSGHLGEVLIRCNNVLYIRGVEEEEE 80 (86)
T ss_dssp EEEEEETTSCEEEEEEEEECTTCCEEEEEEEEEE-TTE--EEEEESSEEECGGGEEEEEECC----
T ss_pred eEEEEEcCCeEEEEEEEEEcCceEEEEeeEEEEc-CCc--eeeEccEEEEeCCeEEEEEeCCcccc
Confidence 5899999999999999999999999999999864 342 35789999999999999999988665
No 14
>2fwk_A U6 snRNA-associated SM-like protein LSM5; structural genomics, structural genomics consortium, SGC, DNA binding protein; 2.14A {Cryptosporidium parvum} SCOP: b.38.1.1 PDB: 3pgg_A
Probab=99.78 E-value=1.4e-19 Score=125.77 Aligned_cols=66 Identities=23% Similarity=0.343 Sum_probs=54.5
Q ss_pred CEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEcC-------ceee-----eeecceEEEecCcEEEEEecCcccc
Q 045257 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVG-------DLYC-----DIPLGLYVIRGENVVLIGELDLEKE 66 (107)
Q Consensus 1 rV~V~L~dGr~i~G~L~gfD~~mNLvL~d~~E~~~~~-------~~~~-----~~~lG~vlIRG~nIv~I~~~d~~~e 66 (107)
+|+|.|+|||.|.|+|+|||+||||+|+||+|++... +... .+.+|.++|||++|++|++.+.+.+
T Consensus 40 ~V~V~Lk~Gr~~~G~L~~fD~~mNlVL~d~~E~~~~~~~~~~~~~g~~~~~~~~r~lG~v~IRG~nVv~I~~~~~~~~ 117 (121)
T 2fwk_A 40 RIYVVMKGDKEFSGVLRGFDEYVNMVLDDVQEYGFKADEEDISGGNKKLKRVMVNRLETILLSGNNVAMLVPGGDPDS 117 (121)
T ss_dssp BCEEEETTTEEECCEEEEECTTCCEEEESCCEEEC---------------CEECCCCSEEEECGGGEEEEESSSCC--
T ss_pred eEEEEECCCcEEEEEEEEEcccCCeEeceEEEEEeccccccccccCcccccccceEcceEEECCCEEEEEEecCCCCC
Confidence 5899999999999999999999999999999987431 1112 6789999999999999999877654
No 15
>1i8f_A Putative snRNP SM-like protein; beta barrel-like SMAP monomers form 35-stranded beta-sheet I heptamer, structural genomics; 1.75A {Pyrobaculum aerophilum} SCOP: b.38.1.1 PDB: 1lnx_A*
Probab=99.78 E-value=5e-19 Score=114.95 Aligned_cols=58 Identities=43% Similarity=0.656 Sum_probs=52.5
Q ss_pred CEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEcCceeeeeecceEEEecCcEEEEEecC
Q 045257 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLIGELD 62 (107)
Q Consensus 1 rV~V~L~dGr~i~G~L~gfD~~mNLvL~d~~E~~~~~~~~~~~~lG~vlIRG~nIv~I~~~d 62 (107)
+|+|.|+|||.|.|+|.|||+||||+|+||.|+ ++. ..+.+|.++|||++|++|++.|
T Consensus 23 ~V~V~l~~g~~~~G~L~~~D~~mNlvL~d~~e~--~~~--~~~~lg~v~iRG~~I~~i~~~d 80 (81)
T 1i8f_A 23 QVLVKLRDSHEIRGILRSFDQHVNLLLEDAEEI--IDG--NVYKRGTMVVRGENVLFISPVP 80 (81)
T ss_dssp EEEEEEGGGEEEEEEEEEECTTCCEEEEEEEEE--ETT--EEEEEEEEEECGGGEEEEEECC
T ss_pred eEEEEEcCCcEEEEEEEEEcCCCeeEEccEEEE--cCC--cccCCCEEEECCCEEEEEEeCC
Confidence 589999999999999999999999999999997 332 3689999999999999999875
No 16
>1mgq_A SM-like protein; LSM, RNA-binding, archea, RNA binding protein; 1.70A {Methanothermobacterthermautotrophicus} SCOP: b.38.1.1 PDB: 1i81_A 1loj_A* 1jbm_A 1jri_A
Probab=99.77 E-value=9.1e-19 Score=114.29 Aligned_cols=57 Identities=35% Similarity=0.519 Sum_probs=51.3
Q ss_pred CEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEcCceeeeeecceEEEecCcEEEEEe
Q 045257 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLIGE 60 (107)
Q Consensus 1 rV~V~L~dGr~i~G~L~gfD~~mNLvL~d~~E~~~~~~~~~~~~lG~vlIRG~nIv~I~~ 60 (107)
+|+|.|+|||.|.|+|.|||+|||++|+||.|++.+. ..+.+|.++|||++|++|++
T Consensus 27 ~V~V~Lk~g~~~~G~L~~~D~~mNlvL~d~~e~~~~~---~~~~lg~v~IRG~~I~~i~p 83 (83)
T 1mgq_A 27 PVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGE---VTRRLGTVLIRGDNIVYISP 83 (83)
T ss_dssp EEEEEETTTEEEEEEEEEECTTCCEEEEEEEEEETTE---EEEEEEEEEECGGGEEEEEC
T ss_pred EEEEEEcCCcEEEEEEEEECCCceeEEccEEEEecCC---cccCCCEEEECCCEEEEEEC
Confidence 5899999999999999999999999999999986332 46889999999999999974
No 17
>1b34_B Protein (small nuclear ribonucleoprotein SM D2); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_C 2y9b_C 2y9c_C 2y9d_C 3cw1_C 3pgw_Y* 3s6n_B
Probab=99.76 E-value=1.3e-18 Score=120.37 Aligned_cols=64 Identities=28% Similarity=0.387 Sum_probs=52.2
Q ss_pred CEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEcCc----e-------eeeeecceEEEecCcEEEEEecCcc
Q 045257 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGD----L-------YCDIPLGLYVIRGENVVLIGELDLE 64 (107)
Q Consensus 1 rV~V~L~dGr~i~G~L~gfD~~mNLvL~d~~E~~~~~~----~-------~~~~~lG~vlIRG~nIv~I~~~d~~ 64 (107)
+|+|.|+|||.|.|+|.|||+||||+|+||.|++.... . ...+.+|.++|||+||++|++.+..
T Consensus 41 ~V~V~Lk~gr~~~G~L~~fD~~mNlvL~d~~E~~~~~~~~~~~~~~~~~~~~~r~lg~v~IRG~nVv~I~~~~~~ 115 (118)
T 1b34_B 41 QVLINCRNNKKLLGRVKAFDRHCNMVLENVKEMWTEVPKSGKGKKKSKPVNKDRYISKMFLRGDSVIVVLRNPLI 115 (118)
T ss_dssp EEEEEETTSCEEEEEEEEECTTCCEEEEEEEEC-------------------CEEEEEEEECGGGEEEEEECCCC
T ss_pred EEEEEECCCcEEEEEEEEeCCceEEEEeCEEEEEecccccccccccccccccccCcCeEEEcCCEEEEEEeCchh
Confidence 58999999999999999999999999999999864311 0 1256799999999999999988654
No 18
>1n9r_A SMF, small nuclear ribonucleoprotein F, snRNP-F, SM protein F; heptamer, translation; 2.80A {Saccharomyces cerevisiae} SCOP: b.38.1.1 PDB: 1n9s_A
Probab=99.75 E-value=1.6e-18 Score=115.87 Aligned_cols=59 Identities=34% Similarity=0.365 Sum_probs=52.8
Q ss_pred CEEEEEcCC-cEEEEEEEEeccccceEEcceEEEEEcCceeeeeecceEEEecCcEEEEEecC
Q 045257 1 KILVLLRDG-RKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLIGELD 62 (107)
Q Consensus 1 rV~V~L~dG-r~i~G~L~gfD~~mNLvL~d~~E~~~~~~~~~~~~lG~vlIRG~nIv~I~~~d 62 (107)
+|+|.|++| |+|.|+|.|||+||||+|+||.|++ .+. ..+.+|.++|||++|++|++.+
T Consensus 33 ~V~V~Lk~g~~~~~G~L~~~D~~MNlvL~d~~E~~-~~~--~~~~lg~v~IRG~nI~~I~~~~ 92 (93)
T 1n9r_A 33 RVGVKLKFNSTEYRGTLVSTDNYFNLQLNEAEEFV-AGV--SHGTLGEIFIRCNNVLYIRELP 92 (93)
T ss_dssp EEEEEESSTTEEEEEEEEECCTTTCEEEEEEEEEE-TTE--EEEECCSEEECGGGEEEEEECC
T ss_pred EEEEEEcCCCEEEEEEEEEEccccEEEEeeEEEEc-CCC--eEeEcCEEEEcCCeEEEEEeCC
Confidence 589999999 9999999999999999999999975 332 3578999999999999999765
No 19
>4emh_A Probable U6 snRNA-associated SM-like protein LSM4; SM fold, mRNA decay, PRE-mRNA splicing, LSM proteins, RNA BI protein; 2.20A {Schizosaccharomyces pombe}
Probab=99.75 E-value=2.5e-18 Score=117.39 Aligned_cols=64 Identities=28% Similarity=0.348 Sum_probs=52.4
Q ss_pred CEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEcCceeeeeecceEEEecCcEEEEEecCcccc
Q 045257 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLIGELDLEKE 66 (107)
Q Consensus 1 rV~V~L~dGr~i~G~L~gfD~~mNLvL~d~~E~~~~~~~~~~~~lG~vlIRG~nIv~I~~~d~~~e 66 (107)
+|+|.|++|++|.|+|.|||+||||+|+||+|...+++ ..+.+|.++|||++|.+|...|...+
T Consensus 28 ~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~e~~~dg~--~~~~lg~v~IRG~nI~~I~~pd~l~d 91 (105)
T 4emh_A 28 PILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGD--KFFRLPECYIRGNNIKYLRIQDEVLS 91 (105)
T ss_dssp EEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTSC--EEEEEEEEEECGGGEEEEEC------
T ss_pred EEEEEECCCCEEEEEEEEEcCCceEEEEEEEEEccCCc--eeeEcCeEEEeCCeEEEEecCHHHhh
Confidence 58999999999999999999999999999999754443 35789999999999999999887665
No 20
>1d3b_A Protein (small nuclear ribonucleoprotein SM D3); snRNP, splicing, core snRNP domain, systemic lupus eryth SLE, RNA binding protein; HET: CIT; 2.00A {Homo sapiens} SCOP: b.38.1.1
Probab=99.74 E-value=5e-18 Score=109.12 Aligned_cols=59 Identities=17% Similarity=0.076 Sum_probs=52.4
Q ss_pred CEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEcCceeeeeecceEEEecCcEEEEEecC
Q 045257 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLIGELD 62 (107)
Q Consensus 1 rV~V~L~dGr~i~G~L~gfD~~mNLvL~d~~E~~~~~~~~~~~~lG~vlIRG~nIv~I~~~d 62 (107)
+|+|.|++|++|.|+|.|||+|||++|+||.|...++ ..+.+|.++|||++|.+|...|
T Consensus 17 ~V~VeLk~g~~~~G~L~~~D~~MNl~L~~~~e~~~~~---~~~~lg~v~IRG~nI~~i~lPd 75 (75)
T 1d3b_A 17 IVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDG---RVAQLEQVYIRGCKIRFLILPD 75 (75)
T ss_dssp EEEEEETTSCEEEEEEEEECTTCCEEEEEEEEECTTS---CEEEEEEEEECGGGEEEEEECC
T ss_pred EEEEEECCCcEEEEEEEEEccceeEEEEeEEEECCCC---cEEEcCeEEEeCCEEEEEEcCC
Confidence 4899999999999999999999999999999975333 2578999999999999998754
No 21
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A
Probab=99.74 E-value=7.6e-18 Score=128.58 Aligned_cols=65 Identities=28% Similarity=0.399 Sum_probs=55.8
Q ss_pred CEEEEEcCCcEEEEEEEEeccccceEEcceEEEEE-cC------ceeeeeecceEEEecCcEEEEEecCccc
Q 045257 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERII-VG------DLYCDIPLGLYVIRGENVVLIGELDLEK 65 (107)
Q Consensus 1 rV~V~L~dGr~i~G~L~gfD~~mNLvL~d~~E~~~-~~------~~~~~~~lG~vlIRG~nIv~I~~~d~~~ 65 (107)
+|+|+|+|||+|+|+|+|||+||||||+||+|++. .. +..+++.+|+++|||+||++|+..+..-
T Consensus 16 rV~V~LkdGRel~GtLkgFDq~MNLVL~Da~E~~~ik~k~~k~~~~~~~R~LGlV~IRGdnIV~Isve~pPp 87 (231)
T 3pgw_B 16 RMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSKQAEREEKRVLGLVLLRGENLVSMTVEGPPP 87 (231)
T ss_pred eEEEEECCCcEEEEEEEEEcccccEEecCEEEEEeccCcccccccccceeEeceEEECCCcEEEEEecCCCC
Confidence 68999999999999999999999999999999864 11 1235789999999999999999765544
No 22
>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A
Probab=99.71 E-value=1.7e-17 Score=115.04 Aligned_cols=60 Identities=20% Similarity=0.237 Sum_probs=53.6
Q ss_pred CEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEcCceeeeeecceEEEecCcEEEEEecCc
Q 045257 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLIGELDL 63 (107)
Q Consensus 1 rV~V~L~dGr~i~G~L~gfD~~mNLvL~d~~E~~~~~~~~~~~~lG~vlIRG~nIv~I~~~d~ 63 (107)
+|+|.|++|++|.|+|.|||+||||+|+||+|+..++ ..+.+|.++|||+||++|...|.
T Consensus 14 ~V~V~Lk~g~~~~G~L~~~D~~MNlvL~d~~e~~~~~---~~~~lg~v~IRG~nI~~I~~pd~ 73 (119)
T 1b34_A 14 TVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNR---EPVQLETLSIRGNNIRYFILPDS 73 (119)
T ss_dssp EEEEEETTCCEEEEEEEEECTTCCEEEEEEEEECTTS---CCEEEEEEEECGGGEEEEECCTT
T ss_pred EEEEEEcCCCEEEEEEEEEcccceEEeccEEEecCCC---ceeEcceEEEcCCeEEEEEeccc
Confidence 4899999999999999999999999999999975332 24789999999999999998876
No 23
>1m5q_A SMAP3, small nuclear ribonucleoprotein homolog, SM-like P; OB-like fold, B-sheet toroid, 14-MER, cadmium-binding site, translation; 2.00A {Pyrobaculum aerophilum} SCOP: b.38.1.1
Probab=99.66 E-value=1e-16 Score=113.08 Aligned_cols=59 Identities=24% Similarity=0.356 Sum_probs=53.4
Q ss_pred CEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEcCceeeeeecceEEEecCcEEEEEecCcccc
Q 045257 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLIGELDLEKE 66 (107)
Q Consensus 1 rV~V~L~dGr~i~G~L~gfD~~mNLvL~d~~E~~~~~~~~~~~~lG~vlIRG~nIv~I~~~d~~~e 66 (107)
+|+|.|+||+.|.|+|.|||+||||+|+||.|. .+ +.+|.++|||+||++|++.+...+
T Consensus 12 ~V~V~Lk~G~~~~G~L~~~D~~MNlvL~d~~E~--~~-----~~lg~v~IRG~nI~~I~~~d~~~d 70 (130)
T 1m5q_A 12 EVQVVLSNGEVYKGVLHAVDNQLNIVLANASNK--AG-----EKFNRVFIMYRYIVHIDSTERRID 70 (130)
T ss_dssp EEEEEETTSCEEEEEEEEECTTCCEEEEEEECT--TC-----CEEEEEEECGGGEEEEEECCCCCC
T ss_pred eEEEEECCCcEEEEEEEEEcccceeEEeeEEEE--cC-----CEeceEEEeCCeEEEEEcCCcccC
Confidence 589999999999999999999999999999985 22 578999999999999999888754
No 24
>2y9a_D Small nuclear ribonucleoprotein SM D3; splicing-RNA complex, PRE-mRNA splicing, spliceosome, snRNP biogenesis, SM site, SM fold, heteromeric heptameric ring; 3.60A {Homo sapiens} PDB: 2y9b_D 2y9c_D 2y9d_D 3pgw_Z* 3cw1_D
Probab=99.64 E-value=4.1e-16 Score=109.44 Aligned_cols=61 Identities=16% Similarity=0.102 Sum_probs=53.4
Q ss_pred CEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEcCceeeeeecceEEEecCcEEEEEecCcc
Q 045257 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLIGELDLE 64 (107)
Q Consensus 1 rV~V~L~dGr~i~G~L~gfD~~mNLvL~d~~E~~~~~~~~~~~~lG~vlIRG~nIv~I~~~d~~ 64 (107)
+|+|.|++|++|.|+|.+||+||||+|+||+|+..++. ...+|.++|||++|.+|...|.-
T Consensus 17 ~V~VeLknG~~~~G~L~~~D~~MNi~L~dv~e~~~~g~---~~~l~~v~IRGnnI~~I~lpd~l 77 (126)
T 2y9a_D 17 IVTCETNTGEVYRGKLIEAEDNMNCQMSNITVTYRDGR---VAQLEQVYIRGSKIRFLILPDML 77 (126)
T ss_dssp EEEEEESSCCEEEEEEEEECTTSCEEEEEEEEECTTSC---CEEEEEEEECGGGEEEEECCSSC
T ss_pred EEEEEECCCcEEEEEEEEEcCceEEEEeeEEEEcCCCc---EeecccEEEeCCEEEEEEccccc
Confidence 48999999999999999999999999999999743332 57899999999999999966553
No 25
>1y96_A Gemin6, SIP2, GEM-associated protein 6; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=98.22 E-value=3.4e-06 Score=55.55 Aligned_cols=57 Identities=18% Similarity=0.195 Sum_probs=48.0
Q ss_pred CEEEEEcCCcEEEEEEEEec-cccceEEcceEEEEEcCceeeeeecceEEEecCcEEEEEecCcccc
Q 045257 1 KILVLLRDGRKLLGLLRSFD-QFANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLIGELDLEKE 66 (107)
Q Consensus 1 rV~V~L~dGr~i~G~L~gfD-~~mNLvL~d~~E~~~~~~~~~~~~lG~vlIRG~nIv~I~~~d~~~e 66 (107)
+|.|+|.||++|+|.|.+|| ...|++|.++- .++ ....++|.|..|..|...+.+.+
T Consensus 19 eV~V~l~dg~~y~G~l~tvDp~s~sIvL~n~~----~~~-----~~~~~iI~G~aI~eI~v~~~~~~ 76 (86)
T 1y96_A 19 EVRVTASEKNEYKGWVLTTDPVSANIVLVNFL----EDG-----SMSVTGIMGHAVQTVETMNEGDH 76 (86)
T ss_dssp EEEEEETTTEEEEEEEEEECTTTCCEEEEEEC----TTS-----CEEEEEECGGGEEEEEEEECCCH
T ss_pred EEEEEEcCCCEEEEEEEEECCCceEEEEeecc----cCC-----eEEEEEEecceEEEEEEecchhH
Confidence 48999999999999999999 77899999981 232 34689999999999998866554
No 26
>1u1s_A HFQ protein; SM-like bacterial protein, riken structural genomics/proteomics initiative, RSGI, structural genomics, RNA binding protein; 1.60A {Pseudomonas aeruginosa} SCOP: b.38.1.2 PDB: 1u1t_A 3qui_A* 3m4g_A 3inz_A
Probab=96.07 E-value=0.0097 Score=38.66 Aligned_cols=27 Identities=41% Similarity=0.735 Sum_probs=23.6
Q ss_pred CEEEEEcCCcEEEEEEEEeccccceEEc
Q 045257 1 KILVLLRDGRKLLGLLRSFDQFANVVLE 28 (107)
Q Consensus 1 rV~V~L~dGr~i~G~L~gfD~~mNLvL~ 28 (107)
.|+|.|.+|-.+.|.+.|||+|+ +.|+
T Consensus 21 ~Vtv~L~NG~~l~G~I~~fD~ft-VlL~ 47 (82)
T 1u1s_A 21 PVSIYLVNGIKLQGQIESFDQFV-ILLK 47 (82)
T ss_dssp CEEEEETTSCEEEEEEEEECSSE-EEEE
T ss_pred cEEEEEeCCcEEEEEEEEEcceE-EEEe
Confidence 48899999999999999999999 4443
No 27
>2ylb_A Protein HFQ; RNA-binding protein, LSM protein, RNA chaperone; 1.15A {Salmonella enterica subsp} PDB: 2yht_A 1hk9_A 2ylc_A* 3gib_A* 3rer_A* 3qo3_A* 3res_A*
Probab=95.89 E-value=0.014 Score=37.15 Aligned_cols=46 Identities=24% Similarity=0.385 Sum_probs=34.7
Q ss_pred CEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEcCceeeeeecceEEEecCcEEEEEecC
Q 045257 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLIGELD 62 (107)
Q Consensus 1 rV~V~L~dGr~i~G~L~gfD~~mNLvL~d~~E~~~~~~~~~~~~lG~vlIRG~nIv~I~~~d 62 (107)
.|.|.|.+|-.+.|.+.+||+|+ +.|++. ...+|.-..|..|.+..
T Consensus 23 ~Vti~L~nG~~l~G~I~~fD~f~-vlL~~~---------------~~~LIYKhAIsTI~p~~ 68 (74)
T 2ylb_A 23 PVSIYLVNGIKLQGQIESFDQFV-ILLKNT---------------VSQMVYKHAISTVVPSR 68 (74)
T ss_dssp CEEEEETTSCEEEEEEEEECSSE-EEEESS---------------SEEEEEGGGEEEEEESS
T ss_pred cEEEEEeCCCEEEEEEEEECCcE-EEEECC---------------ceEEEEeeeEEEEeEcc
Confidence 47899999999999999999998 444321 24566777777777653
No 28
>3sb2_A Protein HFQ; SM-like, RNA chaperone, chaperone; 2.63A {Herbaspirillum seropedicae} SCOP: b.38.1.2
Probab=95.85 E-value=0.014 Score=37.61 Aligned_cols=46 Identities=24% Similarity=0.343 Sum_probs=34.3
Q ss_pred CEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEcCceeeeeecceEEEecCcEEEEEecC
Q 045257 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLIGELD 62 (107)
Q Consensus 1 rV~V~L~dGr~i~G~L~gfD~~mNLvL~d~~E~~~~~~~~~~~~lG~vlIRG~nIv~I~~~d 62 (107)
.|.|.|.+|-.+.|.+.+||+|+ ++|+ ++. ..+|.-..|..|.+..
T Consensus 22 ~VtI~LvnG~~L~G~I~~fD~f~-VlL~-------~g~--------~qLIYKhAISTI~P~~ 67 (79)
T 3sb2_A 22 PVSIYLVNGIKLQGHVESFDQYV-VLLR-------NTV--------TQMVYKHAISTVVPAR 67 (79)
T ss_dssp CEEEEETTSCEEEEEEEEECSSE-EEEE-------SSS--------EEEEEGGGEEEEEESS
T ss_pred eEEEEEeCCCEEEEEEEEECCcE-EEEE-------CCc--------eEEEEeeeEEEEeecC
Confidence 48999999999999999999998 4442 121 3466677777777653
No 29
>2y90_A Protein HFQ; RNA-binding protein, SM-like, RNA chaperone; 2.25A {Escherichia coli} PDB: 3qhs_A
Probab=95.48 E-value=0.021 Score=38.53 Aligned_cols=27 Identities=41% Similarity=0.735 Sum_probs=23.6
Q ss_pred CEEEEEcCCcEEEEEEEEeccccceEEc
Q 045257 1 KILVLLRDGRKLLGLLRSFDQFANVVLE 28 (107)
Q Consensus 1 rV~V~L~dGr~i~G~L~gfD~~mNLvL~ 28 (107)
.|.|.|.+|-.+.|.+.+||+|+ ++|.
T Consensus 23 ~VtI~LvNG~~L~G~I~~fD~f~-VlL~ 49 (104)
T 2y90_A 23 PVSIYLVNGIKLQGQIESFDQFV-ILLK 49 (104)
T ss_dssp CEEEEETTSCEEEEEEEEECSSE-EEEE
T ss_pred cEEEEEeCCCEEEEEEEEECCcE-EEEE
Confidence 48899999999999999999999 4443
No 30
>3ahu_A Protein HFQ; SM-like motif, protein-RNA complex, translation-RNA complex; 2.20A {Bacillus subtilis} PDB: 3hsb_A
Probab=95.32 E-value=0.03 Score=35.94 Aligned_cols=26 Identities=31% Similarity=0.604 Sum_probs=23.2
Q ss_pred CEEEEEcCCcEEEEEEEEeccccceE
Q 045257 1 KILVLLRDGRKLLGLLRSFDQFANVV 26 (107)
Q Consensus 1 rV~V~L~dGr~i~G~L~gfD~~mNLv 26 (107)
.|+|.|.+|-.+.|.+.|||+|+=|+
T Consensus 25 ~Vtv~L~nG~~l~G~I~~fD~f~VlL 50 (78)
T 3ahu_A 25 YVTVFLLNGFQLRGQVKGFDNFTVLL 50 (78)
T ss_dssp CEEEEETTSCEEEEEEEEECSSEEEE
T ss_pred cEEEEEeCCeEEEEEEEEEcceEEEE
Confidence 47899999999999999999999444
No 31
>2qtx_A Uncharacterized protein MJ1435; HFQ, SM, RNA-binding protein, sRNA, translational regulation, RNA binding protein; 2.50A {Methanocaldococcus jannaschii}
Probab=95.24 E-value=0.031 Score=35.35 Aligned_cols=25 Identities=20% Similarity=0.409 Sum_probs=22.7
Q ss_pred EEEEEcCCcEEEEEEEEeccccceE
Q 045257 2 ILVLLRDGRKLLGLLRSFDQFANVV 26 (107)
Q Consensus 2 V~V~L~dGr~i~G~L~gfD~~mNLv 26 (107)
|+|.|.+|-.+.|.+.|||+|+=++
T Consensus 28 Vtv~L~NG~~l~G~I~~fD~ftVll 52 (71)
T 2qtx_A 28 VKIFLRNGEVLDAEVTGVSNYEIMV 52 (71)
T ss_dssp EEEEETTSCEEEEEEEEECSSEEEE
T ss_pred EEEEEeCCeEEEEEEEEEcceEEEE
Confidence 7899999999999999999999444
No 32
>1kq1_A HFQ, HOST factor for Q beta; hexamer, RNA binding protein, translational regulator, SM motif; 1.55A {Staphylococcus aureus} SCOP: b.38.1.2 PDB: 1kq2_A
Probab=94.54 E-value=0.059 Score=34.43 Aligned_cols=25 Identities=16% Similarity=0.557 Sum_probs=22.5
Q ss_pred EEEEEcCCcEEEEEEEEeccccceE
Q 045257 2 ILVLLRDGRKLLGLLRSFDQFANVV 26 (107)
Q Consensus 2 V~V~L~dGr~i~G~L~gfD~~mNLv 26 (107)
|.|.|.+|-.+.|.+.+||+|+=++
T Consensus 22 VtI~L~nG~~l~G~I~~fD~f~VlL 46 (77)
T 1kq1_A 22 VTVFFLNGFQMKGVIEEYDKYVVSL 46 (77)
T ss_dssp EEEEETTSCEEEEEEEEECSSEEEE
T ss_pred EEEEEeCCCEEEEEEEEECCcEEEE
Confidence 7899999999999999999998433
No 33
>3hfo_A SSR3341 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 1.30A {Synechocystis SP}
Probab=92.73 E-value=0.3 Score=30.65 Aligned_cols=45 Identities=20% Similarity=0.221 Sum_probs=32.7
Q ss_pred EEEEEcCCcEEEEEEEEeccccceEEcceEEEEEcCceeeeeecceEEEecCcEEEEEe
Q 045257 2 ILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLIGE 60 (107)
Q Consensus 2 V~V~L~dGr~i~G~L~gfD~~mNLvL~d~~E~~~~~~~~~~~~lG~vlIRG~nIv~I~~ 60 (107)
|.|.|.+|..++|.+.-+|+|. |.|.+.. + -.++|....|++|-+
T Consensus 24 V~I~L~tG~~l~G~i~WQD~~c-l~L~~~~-----~--------~~~LI~r~AI~~I~p 68 (70)
T 3hfo_A 24 VEIKLLTGDSLFGTIRWQDTDG-LGLVDDS-----E--------RSTIVRLAAIAYITP 68 (70)
T ss_dssp EEEEETTSCEEEEEEEEECSSE-EEEECTT-----C--------CEEEEEGGGEEEEEE
T ss_pred EEEEecCCCEEEEEEEEeCCCE-EEEEcCC-----C--------CeEEEEeeeeEEEee
Confidence 7899999999999999999987 4443321 1 035666777777654
No 34
>3hfn_A ASL2047 protein; HFQ, SM, RNA-binding protein, sRNA, translational regulation binding protein; 2.31A {Nostoc SP}
Probab=92.50 E-value=0.64 Score=29.26 Aligned_cols=46 Identities=13% Similarity=0.125 Sum_probs=33.9
Q ss_pred EEEEEcCCcEEEEEEEEeccccceEEcceEEEEEcCceeeeeecceEEEecCcEEEEEec
Q 045257 2 ILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLIGEL 61 (107)
Q Consensus 2 V~V~L~dGr~i~G~L~gfD~~mNLvL~d~~E~~~~~~~~~~~~lG~vlIRG~nIv~I~~~ 61 (107)
|.|+|.+|..++|.+.-+|++. |.|.+..+ ..++|....|++|-+.
T Consensus 26 V~I~L~tGd~l~G~i~WQD~~c-l~L~~~~~-------------~~~LI~R~AI~~Ikp~ 71 (72)
T 3hfn_A 26 VEIKLVTGDAITGRVLWQDPTC-VCIADENS-------------RQTTIWKQAIAYLQPK 71 (72)
T ss_dssp EEEEETTSCEEEEEEEEECSSE-EEEEC----------------CEEEEEGGGEEEEEEC
T ss_pred EEEEecCCCEEEEEEEEECCCE-EEEEcCCC-------------CeEEEEeeeeEEEEeC
Confidence 7899999999999999999987 44443321 1467777788877653
No 35
>2vxe_A CG10686-PA; EDC3, CAR-1, P-bodies, decapping, mRNA decay, LSM proteins, translational repression, transcription; NMR {Drosophila melanogaster}
Probab=89.77 E-value=1.7 Score=28.36 Aligned_cols=63 Identities=14% Similarity=0.081 Sum_probs=45.7
Q ss_pred CEEEEEcCCcEEEEEEEEecc-ccceEEcceEEEEEcCce------eeeeecceEEEecCcEEEEEecCc
Q 045257 1 KILVLLRDGRKLLGLLRSFDQ-FANVVLEGACERIIVGDL------YCDIPLGLYVIRGENVVLIGELDL 63 (107)
Q Consensus 1 rV~V~L~dGr~i~G~L~gfD~-~mNLvL~d~~E~~~~~~~------~~~~~lG~vlIRG~nIv~I~~~d~ 63 (107)
+|.+..+.+-.|+|+|...|. -.-+.|.++..+=.++.. .....+..++.||+.|--+...+.
T Consensus 15 ~iSLISk~dIRYeGiL~~In~~~sTi~L~nVrsfGTEgR~~~~~ipp~~~vy~yIvFrgsDIKdL~V~~~ 84 (88)
T 2vxe_A 15 KISLISKADIRYEGRLYTVDPQECTIALSSVRSFGTEDRDTQFQIAPQSQIYDYILFRGSDIKDIRVVNN 84 (88)
T ss_dssp EEEEEETTTEEEEEEEEEEETTTTEEEEEEEEECCCTTTCCSSCCCCCCSCEEEEEEETTTEEEEEECCC
T ss_pred eEEEEECCCceEEEEEeeecCcccEEEEEeeeEecCcCCCCCcccCCCCceeeEEEEccCCccEEEEecc
Confidence 367788899999999999994 467999998653222211 122355789999999998887654
No 36
>2fb7_A SM-like protein, LSM-14_N (RAP55); DR.13312, BC055387, AAH55387, stronGly BENT five-stranded antiparallel beta- sheet, structural genomics, PSI; NMR {Danio rerio} SCOP: b.38.1.5 PDB: 2vxf_A
Probab=88.44 E-value=1.1 Score=29.65 Aligned_cols=65 Identities=17% Similarity=0.163 Sum_probs=46.7
Q ss_pred CEEEEEcCCcEEEEEEEEec-cccceEEcceEEEEEcCc----e--eeeeecceEEEecCcEEEEEecCccc
Q 045257 1 KILVLLRDGRKLLGLLRSFD-QFANVVLEGACERIIVGD----L--YCDIPLGLYVIRGENVVLIGELDLEK 65 (107)
Q Consensus 1 rV~V~L~dGr~i~G~L~gfD-~~mNLvL~d~~E~~~~~~----~--~~~~~lG~vlIRG~nIv~I~~~d~~~ 65 (107)
+|.+..+.+-.|+|+|...| +-.-+.|.++..+=..+. . .....+..++.||+.|--+...+.+.
T Consensus 21 ~ISLISk~dIRYeGiL~~In~~~sTiaL~nVRsfGTEgR~~~~~ipp~~~vyeyIvFrGsDIKDL~V~e~p~ 92 (95)
T 2fb7_A 21 KISLISKAEIRYEGILYTIDTENSTVALAKVRSFGTEDRPTDRPIAPRDETFEYIIFRGSDIKDLTVCEPPK 92 (95)
T ss_dssp EEEEEETTTEEEEEEEEEEETTTTEEEEESCCCCSCCSSSCSSCCCSCCCCSSCEEECSTTEEEEEESCCSC
T ss_pred eEEEEECCCceEEEEEecccCccCEEEEEeeeEecccCCCCCCccCCCCcceeEEEEcCCCcceEEEecCCC
Confidence 36778889999999999999 456789998854211111 0 12335678999999999988776554
No 37
>1ycy_A Conserved hypothetical protein; structural genomics, southeast collaboratory for structural genomics, secsg, protein structure initiative; 2.80A {Pyrococcus furiosus} SCOP: b.38.1.4
Probab=83.73 E-value=2.7 Score=26.10 Aligned_cols=51 Identities=24% Similarity=0.327 Sum_probs=31.6
Q ss_pred CEEEEEcCCcEEEEEEEEeccccceEEcceEEEEEcCceeeeeecceEEEecCcEEEEE
Q 045257 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLIG 59 (107)
Q Consensus 1 rV~V~L~dGr~i~G~L~gfD~~mNLvL~d~~E~~~~~~~~~~~~lG~vlIRG~nIv~I~ 59 (107)
||-|...+...|+|+|.-||.-. +.|.|++++. +++ --.++++=+.|-.|-
T Consensus 18 rvAv~vg~ehSFtGiledFDeEv-iLL~dV~D~~--GNk-----~k~liv~idDinWim 68 (71)
T 1ycy_A 18 KVAVSVGGDHSFTGTLEDFDEEV-ILLKDVVDVI--GNR-----GKQMLIGLEDINWIM 68 (71)
T ss_dssp EEEEEEC----CEEEEEEECSSE-EEEEEEEETT--EEE-----EEEEEEEGGGEEEEE
T ss_pred EEEEEecCcceeeeehhhcCcce-eehhhHHHHh--ccc-----cceeEEEeccceEEE
Confidence 45566667789999999999887 7889998853 221 124555556655543
No 38
>1y96_B Gemin7, SIP3, GEM-associated protein 7; SM fold, protein complex, RNA binding protein; 2.00A {Homo sapiens}
Probab=82.82 E-value=4.6 Score=26.13 Aligned_cols=51 Identities=12% Similarity=0.117 Sum_probs=38.4
Q ss_pred CEEEEEcCCcEEEEEEEEec-cccceEEcceEEEEEcCceeeeeecceEEEecCcEEEEE
Q 045257 1 KILVLLRDGRKLLGLLRSFD-QFANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLIG 59 (107)
Q Consensus 1 rV~V~L~dGr~i~G~L~gfD-~~mNLvL~d~~E~~~~~~~~~~~~lG~vlIRG~nIv~I~ 59 (107)
+|.+.|.++.+..|.+.++| ...|+..++-. .+ -..+...++|+..|++++
T Consensus 31 ~v~f~m~E~t~V~a~F~a~d~d~~~f~Vs~L~----TP----iGv~~eAlLR~~Dii~~s 82 (85)
T 1y96_B 31 QVSFTLHEGVRVAAHFGATDLDVANFYVSQLQ----TP----IGVQAEALLRCSDIISYT 82 (85)
T ss_dssp EEEEEEGGGCEEEEEEEEECTTCCEEEEEEEC----CT----TCCEEEEEEEGGGEEEEE
T ss_pred ceEEEEeCCeEEEEEEEecCcccceeEhhhcC----CC----cccchhhhhhcCCEEEEE
Confidence 37789999999999999999 55677765441 11 123558899999999876
No 39
>2vc8_A Enhancer of mRNA-decapping protein 3; P-BODY component, cytoplasm, SM-like protein, protein-binding; 1.31A {Homo sapiens}
Probab=82.68 E-value=5.3 Score=25.78 Aligned_cols=59 Identities=14% Similarity=0.142 Sum_probs=45.7
Q ss_pred EEEEEcCCc-EEEEEEEEeccc-cceEEcceEEEEEcCceeeeeecceEEEecCcEEEEEecCcccc
Q 045257 2 ILVLLRDGR-KLLGLLRSFDQF-ANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLIGELDLEKE 66 (107)
Q Consensus 2 V~V~L~dGr-~i~G~L~gfD~~-mNLvL~d~~E~~~~~~~~~~~~lG~vlIRG~nIv~I~~~d~~~e 66 (107)
|.+...++- .|+|.+...|+. .||.|.+++ +++- +...-.+.+++..|..+..++.+.+
T Consensus 12 VSi~c~d~lGvYQG~i~~vd~~~~tItL~~~f---~NG~---~~~s~eVtls~~DI~~L~ii~~~~~ 72 (84)
T 2vc8_A 12 VSINCGDSLGVYQGRVSAVDQVSQTISLTRPF---HNGV---KCLVPEVTFRAGDITELKILEIPGP 72 (84)
T ss_dssp EEEECCTTTCEEEEEEEEEETTTTEEEEEEEE---ETTE---ECSSSEEEEEGGGCSEEEEEECCCS
T ss_pred EEEEECCCceEEEEEEEEeccCCCeEEEehhh---hCCC---CCCCcEEEEEecChhheEEEecCCC
Confidence 667788888 999999999977 689999995 3543 2233579999999888887766554
No 40
>4a53_A EDC3; RNA binding protein; NMR {Schizosaccharomyces pombe} PDB: 4a54_A
Probab=73.90 E-value=3.5 Score=28.48 Aligned_cols=51 Identities=24% Similarity=0.296 Sum_probs=36.5
Q ss_pred CEEEEEcCCcEEEEEEEEeccccceEE--cceEEEEEcCceeeeeecceEEEecCcEEEEEecCccc
Q 045257 1 KILVLLRDGRKLLGLLRSFDQFANVVL--EGACERIIVGDLYCDIPLGLYVIRGENVVLIGELDLEK 65 (107)
Q Consensus 1 rV~V~L~dGr~i~G~L~gfD~~mNLvL--~d~~E~~~~~~~~~~~~lG~vlIRG~nIv~I~~~d~~~ 65 (107)
.|.|.|+||..++|++..+|.- +|.| .+|...+ .-|+...|.-+..++.+.
T Consensus 14 ~V~v~LkDgs~~qG~I~~vd~k-~LtL~~~~a~~s~-------------~~I~asdI~DLkVl~~~~ 66 (125)
T 4a53_A 14 NVEVLLNNDSKARGVITNFDSS-NSILQLRLANDST-------------KSIVTKDIKDLRILPKNE 66 (125)
T ss_dssp EEEEEETTSCEEEEEEEEEETT-TTEEEEEETTTEE-------------EEEEGGGEEEEEECCSCC
T ss_pred eEEEEECCCCEeeEEEEeecCC-eeEEecccccccc-------------ceeecccccceeeeeccc
Confidence 3889999999999999999854 4666 8883321 167777777666665444
No 41
>3rux_A BIRA bifunctional protein; biotin-protein ligase, ligase-ligase inhibitor complex; HET: BS5; 1.70A {Mycobacterium tuberculosis} PDB: 3l1a_A 3l2z_A 2cgh_A
Probab=72.12 E-value=3.6 Score=30.92 Aligned_cols=29 Identities=24% Similarity=0.470 Sum_probs=24.3
Q ss_pred EEEEEcCCcEEEEEEEEeccccceEEcce
Q 045257 2 ILVLLRDGRKLLGLLRSFDQFANVVLEGA 30 (107)
Q Consensus 2 V~V~L~dGr~i~G~L~gfD~~mNLvL~d~ 30 (107)
|+|.+.+|..++|+..|.|..+.|+|+..
T Consensus 227 V~v~~~~~~~~~G~~~gId~~G~L~v~~~ 255 (270)
T 3rux_A 227 VRVELPGGQDVVGIARDIDDQGRLCLDVG 255 (270)
T ss_dssp EEEECTTSCEEEEEEEEECTTSCEEEEET
T ss_pred EEEEECCCeEEEEEEEEECCCCeEEEEEC
Confidence 55665678999999999999999998644
No 42
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=52.19 E-value=34 Score=21.16 Aligned_cols=21 Identities=24% Similarity=0.333 Sum_probs=17.3
Q ss_pred EEEEEcCCcEEEEEEEEeccc
Q 045257 2 ILVLLRDGRKLLGLLRSFDQF 22 (107)
Q Consensus 2 V~V~L~dGr~i~G~L~gfD~~ 22 (107)
|.++-.||+.|.|++....+.
T Consensus 22 VL~rw~DG~fYLGtIVd~~~~ 42 (69)
T 2xk0_A 22 VFIKCNDGRFYLGTIIDQTSD 42 (69)
T ss_dssp EEEECTTSCEEEEEEEEECSS
T ss_pred EEEEecCCCEEEEEEEecCCc
Confidence 788999999999999665543
No 43
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=50.95 E-value=18 Score=21.73 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=19.3
Q ss_pred EEEEEcCCcEEEEEEEEecccc
Q 045257 2 ILVLLRDGRKLLGLLRSFDQFA 23 (107)
Q Consensus 2 V~V~L~dGr~i~G~L~gfD~~m 23 (107)
|.+.-+||+.|-|++..+|...
T Consensus 10 VLarwsDG~fYlGtI~~V~~~~ 31 (58)
T 4hcz_A 10 VLARWTDGLLYLGTIKKVDSAR 31 (58)
T ss_dssp EEEECTTSCEEEEEEEEEETTT
T ss_pred EEEEecCCCEEeEEEEEEecCC
Confidence 7788899999999999998663
No 44
>2e12_A SM-like motif, hypothetical protein XCC3642; novel SM-like motif, LSM motif, X- RAY crystallography, translation; 1.70A {Xanthomonas campestris PV}
Probab=48.38 E-value=13 Score=24.43 Aligned_cols=57 Identities=18% Similarity=0.103 Sum_probs=31.2
Q ss_pred CEEEEEcCCcEEEEEEE-------EeccccceEEcceEEEEEcCceeeeeecceEEEecCcEEEEEecC
Q 045257 1 KILVLLRDGRKLLGLLR-------SFDQFANVVLEGACERIIVGDLYCDIPLGLYVIRGENVVLIGELD 62 (107)
Q Consensus 1 rV~V~L~dGr~i~G~L~-------gfD~~mNLvL~d~~E~~~~~~~~~~~~lG~vlIRG~nIv~I~~~d 62 (107)
||.+.|.||+.+.|++- =||...|==.. -.-+..+.+. ..---.+.-+.|+.|.+..
T Consensus 30 ~v~i~l~DGs~l~GTvavrPTiQ~y~d~~~~eG~N-GqlRlD~~D~----~~eph~iWmD~I~aV~plp 93 (101)
T 2e12_A 30 RVRIELDDGSMIAGTVAVRPTIQTYRDEQEREGSN-GQLRIDHLDA----SQEPQWIWMDRIVAVHPMP 93 (101)
T ss_dssp EEEEEETTSCEEEEEESSCCCEEEEECTTCCEEEE-EEEEEECSSS----SCSCEEEEGGGEEEEEECC
T ss_pred EEEEEEcCCCeEeeeeccCchHHHhhCcccccCcc-ceEEeccCCC----cccceeEeeeeeeeeeccc
Confidence 58899999999999862 23555442211 1111111110 1112456777788777653
No 45
>2eay_A Biotin [acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.95A {Aquifex aeolicus} PDB: 3efs_A* 3fjp_A 3efr_A*
Probab=45.89 E-value=11 Score=27.54 Aligned_cols=34 Identities=15% Similarity=0.236 Sum_probs=23.4
Q ss_pred EEEEEEEeccccceEEcceEEEEEcCceeeeeecceEEEec
Q 045257 12 LLGLLRSFDQFANVVLEGACERIIVGDLYCDIPLGLYVIRG 52 (107)
Q Consensus 12 i~G~L~gfD~~mNLvL~d~~E~~~~~~~~~~~~lG~vlIRG 52 (107)
++|+..|.|..+.|+|+.... . .....|.+.+|+
T Consensus 199 ~~G~~~gId~~G~L~v~~~~G------~-~~~~~Gev~~r~ 232 (233)
T 2eay_A 199 ITGKLVGLSEKGGALILTEEG------I-KEILSGEFSLRR 232 (233)
T ss_dssp EEEEEEEECTTSCEEEEETTE------E-EEECSCCEEEC-
T ss_pred EEEEEEEECCCCeEEEEECCC------e-EEEEEeEEEEec
Confidence 999999999999999864311 1 123456676664
No 46
>1ib8_A Conserved protein SP14.3; nucleic acid binding protein, ribosomal protein, essential gene, structural genomics; NMR {Streptococcus pneumoniae} SCOP: b.38.2.1 d.52.4.1
Probab=45.41 E-value=18 Score=25.25 Aligned_cols=25 Identities=24% Similarity=0.324 Sum_probs=18.5
Q ss_pred EEEEE----cCCcEEEEEEEEeccccceEE
Q 045257 2 ILVLL----RDGRKLLGLLRSFDQFANVVL 27 (107)
Q Consensus 2 V~V~L----~dGr~i~G~L~gfD~~mNLvL 27 (107)
|.|+| .+.+.|+|+|.++|.-. +.|
T Consensus 107 V~V~l~~~~~g~k~~~G~L~~~~~~~-v~l 135 (164)
T 1ib8_A 107 IHVGLYQAIDKQKVFEGTLLAFEEDE-LTM 135 (164)
T ss_dssp EEEECSSCSSSCSEEEEEEEEEETTE-EEE
T ss_pred EEEEEecccCCceEEEEEEEEEeCCE-EEE
Confidence 67777 34599999999998643 444
No 47
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=44.52 E-value=32 Score=25.97 Aligned_cols=43 Identities=16% Similarity=0.288 Sum_probs=28.4
Q ss_pred EEEEEcCCcEEEEEEEEeccccceEEcceEEEEEcCceeeeeecceEEEec
Q 045257 2 ILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDLYCDIPLGLYVIRG 52 (107)
Q Consensus 2 V~V~L~dGr~i~G~L~gfD~~mNLvL~d~~E~~~~~~~~~~~~lG~vlIRG 52 (107)
|.|.. ++..++|+..|.|..+.|++...-. ......|.+.+|+
T Consensus 276 V~v~~-~~~~~~G~~~gid~~G~L~v~~~~g-------~~~~~~Gev~~r~ 318 (321)
T 1bia_A 276 VKLII-GDKEIFGISRGIDKQGALLLEQDGI-------IKPWMGGEISLRS 318 (321)
T ss_dssp EEEEE-TTEEEEEEEEEECTTSCEEEEETTE-------EEEESSCEEEEC-
T ss_pred EEEEE-CCcEEEEEEEEECCCCeEEEEECCC-------EEEEEeeeEEEec
Confidence 45543 5568999999999999999864311 1123456776664
No 48
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A
Probab=40.70 E-value=30 Score=27.23 Aligned_cols=30 Identities=30% Similarity=0.364 Sum_probs=25.3
Q ss_pred CEEEEEcCCcEEEEEEEEeccccceEEcce
Q 045257 1 KILVLLRDGRKLLGLLRSFDQFANVVLEGA 30 (107)
Q Consensus 1 rV~V~L~dGr~i~G~L~gfD~~mNLvL~d~ 30 (107)
++.|.+.||+.+.+.+.++|...+|-|=..
T Consensus 89 ~i~V~~~dg~~~~a~vv~~d~~~DlAllkv 118 (436)
T 4a8c_A 89 KISIQLNDGREFDAKLIGSDDQSDIALLQI 118 (436)
T ss_pred EEEEEeCCCCEEEEEEEEEcCCCCEEEEEe
Confidence 478999999999999999999888765433
No 49
>2ej9_A Putative biotin ligase; biotin biosynthesis, monomer, X-RAY diffraction, structural genomics, NPPSFA; HET: BTN; 2.00A {Methanocaldococcus jannaschii}
Probab=40.44 E-value=30 Score=25.14 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=22.1
Q ss_pred EEEEEcCCcEEEEEEEEeccccceEEcc
Q 045257 2 ILVLLRDGRKLLGLLRSFDQFANVVLEG 29 (107)
Q Consensus 2 V~V~L~dGr~i~G~L~gfD~~mNLvL~d 29 (107)
|.+...++..++|+..|.|..+.|+ +.
T Consensus 195 V~v~~~~~~~~~G~~~gId~~G~L~-~~ 221 (237)
T 2ej9_A 195 VKILLSNNEIITGKVYDIDFDGIVL-GT 221 (237)
T ss_dssp EEEEETTSCEEEEEEEEECSSEEEE-EE
T ss_pred EEEEECCCeEEEEEEEEECCCCeEE-Ec
Confidence 5666666666999999999999998 53
No 50
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Probab=40.06 E-value=31 Score=27.42 Aligned_cols=29 Identities=31% Similarity=0.316 Sum_probs=24.8
Q ss_pred CEEEEEcCCcEEEEEEEEeccccceEEcc
Q 045257 1 KILVLLRDGRKLLGLLRSFDQFANVVLEG 29 (107)
Q Consensus 1 rV~V~L~dGr~i~G~L~gfD~~mNLvL~d 29 (107)
++.|.+.||+.+.+.+.++|...+|-|=.
T Consensus 112 ~i~V~~~dg~~~~a~vv~~d~~~DlAvlk 140 (448)
T 1ky9_A 112 VIKVQLSDGRKFDAKMVGKDPRSDIALIQ 140 (448)
T ss_dssp EEEEEETTSCEEEEEEEEEETTTTEEEEE
T ss_pred EEEEEECCCCEEEEEEEEEcCCCCEEEEE
Confidence 37899999999999999999988876543
No 51
>3tqm_A Ribosome-associated factor Y; protein synthesis, protein binding; 2.45A {Coxiella burnetii}
Probab=39.79 E-value=51 Score=20.44 Aligned_cols=19 Identities=16% Similarity=0.107 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhhhhhhhh
Q 045257 82 RAQKAEKDATVLKGSMRKR 100 (107)
Q Consensus 82 ~~~~~e~~~~~~~~~~~~~ 100 (107)
...+-|+|++..|++++.|
T Consensus 77 a~dklerqL~k~k~k~~~h 95 (96)
T 3tqm_A 77 LMHKLETQLSKYKAKKGDH 95 (96)
T ss_dssp HHHHHHHHHHHHHTC----
T ss_pred HHHHHHHHHHHHHHHhhcc
Confidence 5688999999999999887
No 52
>2dxu_A Biotin--[acetyl-COA-carboxylase] ligase; biotin biosynthesis, dimer, X-RAY diffraction, structural genomics, NPPSFA; HET: BT5; 1.28A {Pyrococcus horikoshii} PDB: 2dzc_A 2ejg_A* 2e3y_A* 2e41_A* 2e64_A 2ejf_A* 2zgw_A* 1wqw_A* 1wpy_A* 1wq7_A 1wnl_A* 1x01_A* 2dkg_A* 2dth_A* 2dti_A* 2dto_A* 2fyk_A* 2djz_A* 2hni_A 2e10_A ...
Probab=37.03 E-value=18 Score=26.41 Aligned_cols=26 Identities=15% Similarity=0.390 Sum_probs=18.7
Q ss_pred EEEEEcCCcEEEEEEEEeccccceEEcc
Q 045257 2 ILVLLRDGRKLLGLLRSFDQFANVVLEG 29 (107)
Q Consensus 2 V~V~L~dGr~i~G~L~gfD~~mNLvL~d 29 (107)
|.+...++ ++|+..|.|..+.|+++.
T Consensus 192 V~v~~~~~--~~G~~~gId~~G~L~v~~ 217 (235)
T 2dxu_A 192 VKILGDGS--FEGIAEDIDDFGRLIIRL 217 (235)
T ss_dssp EEC----C--CEEEEEEECTTSCEEEEC
T ss_pred EEEEECCe--EEEEEEEECCCCEEEEEE
Confidence 44544444 999999999999999965
No 53
>1x4r_A PARP14 protein; WWE domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=36.61 E-value=2.1 Score=28.40 Aligned_cols=19 Identities=32% Similarity=0.461 Sum_probs=16.9
Q ss_pred EEEEEEeccccceEEcceE
Q 045257 13 LGLLRSFDQFANVVLEGAC 31 (107)
Q Consensus 13 ~G~L~gfD~~mNLvL~d~~ 31 (107)
-|++.+||.-.|+.|++|.
T Consensus 34 ~~~~~~FDk~TNl~LEeA~ 52 (99)
T 1x4r_A 34 KNITQCFDKMTNMKLEVAW 52 (99)
T ss_dssp SSCEEECCTTHHHHHHHHH
T ss_pred CCeEeechHHHHHHHHHHH
Confidence 3678999999999999995
No 54
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=35.70 E-value=40 Score=25.66 Aligned_cols=27 Identities=11% Similarity=0.262 Sum_probs=21.3
Q ss_pred EEEEEcCCcEEEEEEEEeccccceEEcc
Q 045257 2 ILVLLRDGRKLLGLLRSFDQFANVVLEG 29 (107)
Q Consensus 2 V~V~L~dGr~i~G~L~gfD~~mNLvL~d 29 (107)
|+|. .++..++|+..|.|..+.|+|+.
T Consensus 282 V~v~-~~~~~~~G~~~gId~~G~Llv~~ 308 (323)
T 3rkx_A 282 LLFT-ENDKQFKGQAIDLDYDGYLIVRD 308 (323)
T ss_dssp EEEE-CC-CEEEEEEEEECTTSCEEEEE
T ss_pred EEEE-ECCeEEEEEEEEECCCCEEEEEE
Confidence 5554 35678999999999999999863
No 55
>4fyl_A Ribosome hibernation protein YHBH; beta-alpha-beta-BETA-beta-alpha secondary structure fold SIM YFIA of E. coli; HET: FME; 1.60A {Vibrio cholerae}
Probab=32.56 E-value=27 Score=21.90 Aligned_cols=19 Identities=11% Similarity=0.073 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhhhhhhhh
Q 045257 82 RAQKAEKDATVLKGSMRKR 100 (107)
Q Consensus 82 ~~~~~e~~~~~~~~~~~~~ 100 (107)
...+-|+|++.+|++++.|
T Consensus 77 a~dklerQlrk~K~K~~~H 95 (95)
T 4fyl_A 77 LVDKLVRQLNKHKEKLSSH 95 (95)
T ss_dssp HHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHhcCC
Confidence 5688999999999999876
No 56
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli}
Probab=32.29 E-value=56 Score=23.71 Aligned_cols=27 Identities=33% Similarity=0.460 Sum_probs=23.4
Q ss_pred CEEEEEcCCcEEEEEEEEeccccceEE
Q 045257 1 KILVLLRDGRKLLGLLRSFDQFANVVL 27 (107)
Q Consensus 1 rV~V~L~dGr~i~G~L~gfD~~mNLvL 27 (107)
++.|.+.+|+.+.+.+.+.|....|-|
T Consensus 89 ~i~V~~~dg~~~~a~vv~~d~~~DlAl 115 (245)
T 3sti_A 89 KISIQLNDGREFDAKLIGSDDQSDIAL 115 (245)
T ss_dssp CEEEECTTSCEEEEEEEEEETTTTEEE
T ss_pred EEEEEECCCCEEEEEEEEecCCCCEEE
Confidence 478999999999999999998877655
No 57
>3v26_X ORF3, ORF95, probable sigma(54) modulation protein; ribosome hibernation factor, YHBH, protein E, stress respons stationary phase; 3.10A {Escherichia coli} PDB: 3v28_X 2rql_A
Probab=31.67 E-value=66 Score=20.35 Aligned_cols=20 Identities=15% Similarity=0.184 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhhhhhhhhc
Q 045257 82 RAQKAEKDATVLKGSMRKRM 101 (107)
Q Consensus 82 ~~~~~e~~~~~~~~~~~~~~ 101 (107)
...+-|+|++..|++++.|-
T Consensus 77 a~dkLerQLrK~K~k~~~~~ 96 (101)
T 3v26_X 77 LIDKLARQLTKHKDKLKQHH 96 (101)
T ss_dssp HHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHhhhc
Confidence 56889999999999999863
No 58
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}
Probab=31.06 E-value=46 Score=25.37 Aligned_cols=27 Identities=33% Similarity=0.460 Sum_probs=23.4
Q ss_pred CEEEEEcCCcEEEEEEEEeccccceEE
Q 045257 1 KILVLLRDGRKLLGLLRSFDQFANVVL 27 (107)
Q Consensus 1 rV~V~L~dGr~i~G~L~gfD~~mNLvL 27 (107)
++.|.+.||+.+.+.+.++|....|-|
T Consensus 89 ~i~V~~~dg~~~~a~vv~~d~~~DlAl 115 (345)
T 3stj_A 89 KISIQLNDGREFDAKLIGSDDQSDIAL 115 (345)
T ss_dssp EEEEECTTSCEEEEEEEEEETTTTEEE
T ss_pred EEEEEeCCCcEEEEEEEEEcCCCCEEE
Confidence 367899999999999999998887655
No 59
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=28.37 E-value=65 Score=19.66 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=18.0
Q ss_pred EEEEEcCCcEEEEEEEEeccc
Q 045257 2 ILVLLRDGRKLLGLLRSFDQF 22 (107)
Q Consensus 2 V~V~L~dGr~i~G~L~gfD~~ 22 (107)
|+..-.||+.|.|++...++.
T Consensus 20 VLA~wtDGl~Y~gtI~~V~~~ 40 (66)
T 2eqj_A 20 VLARWSDGLFYLGTIKKINIL 40 (66)
T ss_dssp EEEECTTSCEEEEEEEEEETT
T ss_pred EEEEEccCcEEEeEEEEEccC
Confidence 566778999999999999864
No 60
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A
Probab=28.23 E-value=42 Score=26.63 Aligned_cols=29 Identities=31% Similarity=0.318 Sum_probs=24.7
Q ss_pred CEEEEEcCCcEEEEEEEEeccccceEEcc
Q 045257 1 KILVLLRDGRKLLGLLRSFDQFANVVLEG 29 (107)
Q Consensus 1 rV~V~L~dGr~i~G~L~gfD~~mNLvL~d 29 (107)
++.|.+.||+.+.+.+.++|...+|-|=.
T Consensus 103 ~i~V~~~dg~~~~a~vv~~d~~~DlAlLk 131 (451)
T 3pv2_A 103 LITVTLQDGRRLKARLIGGDSETDLAVLK 131 (451)
T ss_dssp EEEEECTTSCEEECEEEEEETTTTEEEEE
T ss_pred EEEEEEcCCCEEEEEEEecCcCCcEEEEE
Confidence 36889999999999999999988876543
No 61
>3bfm_A Biotin protein ligase-like protein of unknown FUN; structural genomics, joint center for structural genomics, J protein structure initiative; HET: 2PE; 1.70A {Silicibacter SP}
Probab=27.93 E-value=70 Score=22.95 Aligned_cols=21 Identities=19% Similarity=0.248 Sum_probs=18.1
Q ss_pred CCcEEEEEEEEeccccceEEcce
Q 045257 8 DGRKLLGLLRSFDQFANVVLEGA 30 (107)
Q Consensus 8 dGr~i~G~L~gfD~~mNLvL~d~ 30 (107)
+| ++|+..|.|..+.|+++..
T Consensus 200 ~~--~~G~~~gId~~G~L~v~~~ 220 (235)
T 3bfm_A 200 AG--RSGTFLGVDEDFGMLLRDE 220 (235)
T ss_dssp TT--EEEEEEEECTTCCEEEECS
T ss_pred Ee--EEEEEEEECCCCeEEEEeC
Confidence 55 9999999999999999643
No 62
>3v2c_Y Ribosome-associated inhibitor A; RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome-inhibitor; 2.70A {Escherichia coli k-12} PDB: 3v2e_Y 1n3g_A 1l4s_A 1voq_a 1vos_a 1vov_a 1vox_a 1voz_a
Probab=24.98 E-value=99 Score=20.19 Aligned_cols=20 Identities=20% Similarity=0.139 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhhhhhhhhc
Q 045257 82 RAQKAEKDATVLKGSMRKRM 101 (107)
Q Consensus 82 ~~~~~e~~~~~~~~~~~~~~ 101 (107)
...+-++|++..|++++.|-
T Consensus 77 a~dkLerQLrK~K~K~~~~~ 96 (119)
T 3v2c_Y 77 LINKLERQLNKLQHKGEARR 96 (119)
T ss_dssp HHHHHHHHHHHHHHSTTCCC
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 66899999999999998764
No 63
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A
Probab=23.27 E-value=84 Score=22.15 Aligned_cols=26 Identities=35% Similarity=0.584 Sum_probs=22.5
Q ss_pred EEEEEcCCcEEEEEEEEeccccceEE
Q 045257 2 ILVLLRDGRKLLGLLRSFDQFANVVL 27 (107)
Q Consensus 2 V~V~L~dGr~i~G~L~gfD~~mNLvL 27 (107)
+.|.+.+|+.+.+.+.++|....|-|
T Consensus 79 ~~V~~~~g~~~~a~vv~~d~~~DlAl 104 (237)
T 3lgi_A 79 IIVALQDGRVFEALLVGSDSLTDLAV 104 (237)
T ss_dssp EEEECTTSCEEEEEEEEEETTTTEEE
T ss_pred EEEEeCCCCEEEEEEEEEcCCCCEEE
Confidence 67889999999999999998877655
No 64
>2wr8_A Putative uncharacterized protein PH0463; transferase, SAM, SAM hydroxide adenosyltransferase (DUF-62) water activation; HET: SAH; 1.77A {Pyrococcus horikoshii} PDB: 1wu8_A*
Probab=22.75 E-value=70 Score=24.08 Aligned_cols=21 Identities=29% Similarity=0.360 Sum_probs=17.4
Q ss_pred CcEEEEEEEEeccccceEEcc
Q 045257 9 GRKLLGLLRSFDQFANVVLEG 29 (107)
Q Consensus 9 Gr~i~G~L~gfD~~mNLvL~d 29 (107)
+..+.|...-+|.|+|++..=
T Consensus 171 ~~~i~g~V~~iD~FGN~iTnI 191 (259)
T 2wr8_A 171 GDVWILKVIYIDDFGNVILNL 191 (259)
T ss_dssp TTEEEEEEEEECTTCCEEESC
T ss_pred CCeEEEEEEEEcccCChhhcC
Confidence 456899999999999998643
No 65
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A
Probab=22.64 E-value=96 Score=22.93 Aligned_cols=27 Identities=33% Similarity=0.528 Sum_probs=23.1
Q ss_pred EEEEEcCCcEEEEEEEEeccccceEEc
Q 045257 2 ILVLLRDGRKLLGLLRSFDQFANVVLE 28 (107)
Q Consensus 2 V~V~L~dGr~i~G~L~gfD~~mNLvL~ 28 (107)
+.|.+.+|+.+.+.+.++|...+|-|=
T Consensus 68 i~V~~~~g~~~~a~v~~~d~~~DlAll 94 (318)
T 1te0_A 68 IIVALQDGRVFEALLVGSDSLTDLAVL 94 (318)
T ss_dssp EEEECTTSCEEEEEEEEEETTTTEEEE
T ss_pred EEEEeCCCCEEEEEEEEeCCCceEEEE
Confidence 678889999999999999988877653
No 66
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1
Probab=22.13 E-value=86 Score=23.39 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=22.9
Q ss_pred EEEEEcCCcEEEEEEEEeccccceEEc
Q 045257 2 ILVLLRDGRKLLGLLRSFDQFANVVLE 28 (107)
Q Consensus 2 V~V~L~dGr~i~G~L~gfD~~mNLvL~ 28 (107)
+.|.+.+|+.+.+.+.++|....|-|=
T Consensus 73 i~V~~~~g~~~~a~v~~~d~~~DlAll 99 (325)
T 1lcy_A 73 VRVRLLSGDTYEAVVTAVDPVADIATL 99 (325)
T ss_dssp EEEECTTSCEEEEEEEEEETTTTEEEE
T ss_pred EEEEeCCCCEEEEEEEEECCCCCEEEE
Confidence 678889999999999999987776653
No 67
>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A
Probab=22.09 E-value=91 Score=22.01 Aligned_cols=26 Identities=23% Similarity=0.427 Sum_probs=22.7
Q ss_pred EEEEEcCCcEEEEEEEEeccccceEE
Q 045257 2 ILVLLRDGRKLLGLLRSFDQFANVVL 27 (107)
Q Consensus 2 V~V~L~dGr~i~G~L~gfD~~mNLvL 27 (107)
+.|.+.+|+.+.+.+.++|....|-|
T Consensus 89 i~V~~~~g~~~~a~v~~~d~~~DlAl 114 (231)
T 3tjo_A 89 VKVELKNGATYEAKIKDVDEKADIAL 114 (231)
T ss_dssp EEEECTTSCEEEEEEEEEETTTTEEE
T ss_pred EEEEcCCCCEEEEEEEEecCCCCEEE
Confidence 67889999999999999998877665
No 68
>2zbv_A Uncharacterized conserved protein; NPPSFA, national project protein structural and functional analyses; HET: ADN; 2.05A {Thermotoga maritima} PDB: 2zbu_A*
Probab=21.42 E-value=74 Score=23.97 Aligned_cols=19 Identities=32% Similarity=0.510 Sum_probs=16.5
Q ss_pred CcEEEEEEEEeccccceEE
Q 045257 9 GRKLLGLLRSFDQFANVVL 27 (107)
Q Consensus 9 Gr~i~G~L~gfD~~mNLvL 27 (107)
+..+.|...-+|.|+|++.
T Consensus 167 ~~~i~g~V~~iD~FGN~iT 185 (263)
T 2zbv_A 167 NEKVIGEVAIVDTFGNVST 185 (263)
T ss_dssp TTEEEEEEEEECTTCCEEE
T ss_pred CCeEEEEEEEEcccCChhh
Confidence 4568899999999999985
No 69
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A
Probab=21.16 E-value=80 Score=23.35 Aligned_cols=26 Identities=19% Similarity=0.215 Sum_probs=22.5
Q ss_pred EEEEEcCCcEEEEEEEEeccccceEE
Q 045257 2 ILVLLRDGRKLLGLLRSFDQFANVVL 27 (107)
Q Consensus 2 V~V~L~dGr~i~G~L~gfD~~mNLvL 27 (107)
+.|.+.+|+.+.+.+.+||...+|-|
T Consensus 66 i~V~~~~g~~~~a~vv~~d~~~DlAl 91 (324)
T 1y8t_A 66 TTVTFSDGRTAPFTVVGADPTSDIAV 91 (324)
T ss_dssp EEEEETTCCEECEEEEECCTTTTEEE
T ss_pred EEEEeCCCCEEEEEEEEeCCCCCEEE
Confidence 67888999999999999998877665
Done!