BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045258
(106 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VLB|A Chain A, Crystal Structure Of Xeg-Edgp
pdb|3VLB|C Chain C, Crystal Structure Of Xeg-Edgp
Length = 413
Score = 97.1 bits (240), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 77/135 (57%), Gaps = 29/135 (21%)
Query: 1 MKVDDRVVPLNSTLLSIDSQGFGGTKISTVNPYTALEKSIFKA-------EHTWHAFGGI 53
+K++ ++V LN++LLSI S G GGTKIST+NPYT LE SI+KA E +
Sbjct: 244 IKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRV 303
Query: 54 RADHP--TCFA--------------------ENENVIWRIFDANSMVQVNEDMYCPGFVN 91
+ P CF+ ++E+V+W I +NSMV +N+++ C G V+
Sbjct: 304 ASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGVVD 363
Query: 92 GGSKPTTSIVIGGHQ 106
GGS TSIVIGGHQ
Sbjct: 364 GGSNLRTSIVIGGHQ 378
>pdb|3VLA|A Chain A, Crystal Structure Of Edgp
Length = 413
Score = 97.1 bits (240), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 77/135 (57%), Gaps = 29/135 (21%)
Query: 1 MKVDDRVVPLNSTLLSIDSQGFGGTKISTVNPYTALEKSIFKA-------EHTWHAFGGI 53
+K++ ++V LN++LLSI S G GGTKIST+NPYT LE SI+KA E +
Sbjct: 244 IKINSKIVALNTSLLSISSAGLGGTKISTINPYTVLETSIYKAVTEAFIKESAARNITRV 303
Query: 54 RADHP--TCFA--------------------ENENVIWRIFDANSMVQVNEDMYCPGFVN 91
+ P CF+ ++E+V+W I +NSMV +N+++ C G V+
Sbjct: 304 ASVAPFGACFSTDNILSTRLGPSVPSIDLVLQSESVVWTITGSNSMVYINDNVVCLGVVD 363
Query: 92 GGSKPTTSIVIGGHQ 106
GGS TSIVIGGHQ
Sbjct: 364 GGSNLRTSIVIGGHQ 378
>pdb|3AUP|A Chain A, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|B Chain B, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|C Chain C, Crystal Structure Of Basic 7s Globulin From Soybean
pdb|3AUP|D Chain D, Crystal Structure Of Basic 7s Globulin From Soybean
Length = 403
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 22/122 (18%)
Query: 7 VVPLNSTLLSIDSQGFGGTKISTVNPYTALEKSIFKA-----EHTWHAFGGIRADHP--T 59
V PLN +I GGT IST P+ L++S+++A +++ P
Sbjct: 244 VFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQVKSVAPFGL 303
Query: 60 CFAENE---------------NVIWRIFDANSMVQVNEDMYCPGFVNGGSKPTTSIVIGG 104
CF N+ +WRI + MVQ + C G +NGG +P I +G
Sbjct: 304 CFNSNKINAYPSVDLVMDKPNGPVWRISGEDLMVQAQPGVTCLGVMNGGMQPRAEITLGA 363
Query: 105 HQ 106
Q
Sbjct: 364 RQ 365
>pdb|3PMO|A Chain A, The Structure Of Lpxd From Pseudomonas Aeruginosa At 1.3 A
Resolution
Length = 372
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 23/92 (25%), Positives = 35/92 (38%), Gaps = 13/92 (14%)
Query: 14 LLSIDSQGFGGTKISTVNPYTALEKSIFKAEHTWHAFGGIRADHPTCFAENENVIWRIFD 73
L + D+ GF GT + NPY A + A GI HPT I
Sbjct: 83 LTAADADGFAGTALVVANPYLAYASLSHLFDRKPKAAAGI---HPTA----------IVA 129
Query: 74 ANSMVQVNEDMYCPGFVNGGSKPTTSIVIGGH 105
A++ V + + + G++ + IG H
Sbjct: 130 ADAEVDPSASVGAYAVIESGARIGAGVSIGAH 161
>pdb|2GYD|A Chain A, Complex Of Equine Apoferritin With The H-Diaziflurane
Photolabeling Reagent
Length = 170
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 19 SQGFGGTKISTVNPYTALEKSIFKAEHTWHAFGGIRADHPTC 60
SQ GT + + LEKS+ +A HA G +AD C
Sbjct: 84 SQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLC 125
>pdb|3NP0|X Chain X, Crystal Structure Of Pd(Allyl)APO-E45cH49AR52H-Rhlfr
Length = 174
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 19 SQGFGGTKISTVNPYTALEKSIFKAEHTWHAFGGIRADHPTC 60
SQ GT + + LEKS+ +A HA G +AD C
Sbjct: 85 SQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLC 126
>pdb|1IES|A Chain A, Tetragonal Crystal Structure Of Native Horse Spleen
Ferritin
pdb|1IES|B Chain B, Tetragonal Crystal Structure Of Native Horse Spleen
Ferritin
pdb|1IES|C Chain C, Tetragonal Crystal Structure Of Native Horse Spleen
Ferritin
pdb|1IES|D Chain D, Tetragonal Crystal Structure Of Native Horse Spleen
Ferritin
pdb|1IES|E Chain E, Tetragonal Crystal Structure Of Native Horse Spleen
Ferritin
pdb|1IES|F Chain F, Tetragonal Crystal Structure Of Native Horse Spleen
Ferritin
pdb|1GWG|A Chain A, Tri-Iodide Derivative Of Apoferritin
pdb|1XZ1|A Chain A, Complex Of Halothane With Apoferritin
pdb|1XZ3|A Chain A, Complex Of Apoferritin With Isoflurane
pdb|1HRS|A Chain A, A Crystallographic Study Of Haem Binding To Ferritin
pdb|1IER|A Chain A, Cubic Crystal Structure Of Native Horse Spleen Ferritin
pdb|2Z5Q|A Chain A, Apo-Fr With Intermediate Content Of Pd Ion
pdb|2Z5R|A Chain A, Apo-Fr With High Content Of Pd Ions
pdb|2W0O|A Chain A, Horse Spleen Apoferritin
pdb|2ZG7|X Chain X, Crystal Structure Of Pd(Allyl)APO-Fr
pdb|3F32|A Chain A, Horse Spleen Apoferritin
pdb|3F33|A Chain A, Apoferritin: Complex With Propofol
pdb|3F34|A Chain A, Apoferritin: Complex With 2,6-Diethylphenol
pdb|3F35|A Chain A, Apoferritin: Complex With 2,6-Diethylphenol
pdb|3F36|A Chain A, Apoferritin: Complex With 2-Isopropylphenol
pdb|3F37|A Chain A, Apoferritin: Complex With 2,6-Dimethylphenol
pdb|3F38|A Chain A, Apoferritin: Complex With 2,6-Dimethylphenol
pdb|3F39|A Chain A, Apoferritin: Complex With Phenol
pdb|3AF7|X Chain X, Crystal Structure Of 25pd(Allyl)APO-Fr
pdb|3O7S|A Chain A, Crystal Structure Of Ru(P-Cymene)APO-Fr
pdb|3RAV|A Chain A, Horse Spleen Apo-Ferritin With Bound Pentobarbital
pdb|3RD0|A Chain A, Horse Spleen Apo-Ferritin With Bound Thiopental
pdb|4DE6|A Chain A, Horse Spleen Apo-Ferritin Complex With Arachidonic Acid
pdb|3U90|A Chain A, Apoferritin: Complex With Sds
Length = 174
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 19 SQGFGGTKISTVNPYTALEKSIFKAEHTWHAFGGIRADHPTC 60
SQ GT + + LEKS+ +A HA G +AD C
Sbjct: 85 SQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLC 126
>pdb|3NP2|X Chain X, Crystal Structure Of Pd(Allyl)APO-E45cC48A-Rhlfr
Length = 174
Score = 27.3 bits (59), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 19 SQGFGGTKISTVNPYTALEKSIFKAEHTWHAFGGIRADHPTC 60
SQ GT + + LEKS+ +A HA G +AD C
Sbjct: 85 SQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLC 126
>pdb|2ZUR|X Chain X, Crystal Structure Of Rh(Nbd)APO-Fr
Length = 174
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 19 SQGFGGTKISTVNPYTALEKSIFKAEHTWHAFGGIRADHPTC 60
SQ GT + + LEKS+ +A HA G +AD C
Sbjct: 85 SQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLC 126
>pdb|3AF9|X Chain X, Crystal Structure Of Pd(Allyl)APO-C48afr
Length = 174
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 19 SQGFGGTKISTVNPYTALEKSIFKAEHTWHAFGGIRADHPTC 60
SQ GT + + LEKS+ +A HA G +AD C
Sbjct: 85 SQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLC 126
>pdb|3NOZ|X Chain X, Crystal Structure Of Pd(Allyl)APO-E45cR52H-Rhlfr
Length = 174
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 20/42 (47%)
Query: 19 SQGFGGTKISTVNPYTALEKSIFKAEHTWHAFGGIRADHPTC 60
SQ GT + + LEKS+ +A HA G +AD C
Sbjct: 85 SQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLC 126
>pdb|3AF8|X Chain X, Crystal Structure Of Pd(Ally)APO-C126afr
Length = 174
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 19 SQGFGGTKISTVNPYTALEKSIFKAEHTWHAFGGIRAD-HPTCFAEN 64
SQ GT + + LEKS+ +A HA G +AD H F E+
Sbjct: 85 SQDEWGTTLDAMKAAIVLEKSLNQALLDLHALGSAQADPHLADFLES 131
>pdb|1V2I|A Chain A, Structure Of The Hemagglutinin-neuraminidase From Human
Parainfluenza Virus Type Iii
pdb|1V2I|B Chain B, Structure Of The Hemagglutinin-neuraminidase From Human
Parainfluenza Virus Type Iii
pdb|1V3B|A Chain A, Structure Of The Hemagglutinin-Neuraminidase From Human
Parainfluenza Virus Type Iii
pdb|1V3B|B Chain B, Structure Of The Hemagglutinin-Neuraminidase From Human
Parainfluenza Virus Type Iii
pdb|1V3C|A Chain A, Structure Of The Hemagglutinin-Neuraminidase From Human
Parainfluenza Virus Type Iii: Complex With Neu5ac
pdb|1V3C|B Chain B, Structure Of The Hemagglutinin-Neuraminidase From Human
Parainfluenza Virus Type Iii: Complex With Neu5ac
pdb|1V3D|A Chain A, Structure Of The Hemagglutinin-Neuraminidase From Human
Parainfluenza Virus Type Iii: Complex With Neu5ac2en
pdb|1V3D|B Chain B, Structure Of The Hemagglutinin-Neuraminidase From Human
Parainfluenza Virus Type Iii: Complex With Neu5ac2en
pdb|1V3E|A Chain A, Structure Of The Hemagglutinin-Neuraminidase From Human
Parainfluenza Virus Type Iii: Complex With Zanamavir
pdb|1V3E|B Chain B, Structure Of The Hemagglutinin-Neuraminidase From Human
Parainfluenza Virus Type Iii: Complex With Zanamavir
Length = 431
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 11/58 (18%)
Query: 16 SIDSQGFGGTKISTVNPYTALEKSI-----FKAEHTWHAFGGIRADHPTCFAENENVI 68
SI + F IS PY AL S+ +K + + +GG+ +HP NENVI
Sbjct: 157 SISTTRFKNNNISFDQPYAALYPSVGPGIYYKGKIIFLGYGGL--EHPI----NENVI 208
>pdb|1T6E|X Chain X, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor I
pdb|1T6G|A Chain A, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
pdb|1T6G|B Chain B, Crystal Structure Of The Triticum Aestivum Xylanase
Inhibitor-i In Complex With Aspergillus Niger Xylanase-i
Length = 381
Score = 25.0 bits (53), Expect = 9.9, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 69 WRIFDANSMVQVNEDMYCPGFVN-----GGSKPTTSIVIGGHQ 106
W + NSMV V + C FV G ++++GG Q
Sbjct: 310 WTMTGKNSMVDVKQGTACVAFVEMKGVAAGDGRAPAVILGGAQ 352
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,422,946
Number of Sequences: 62578
Number of extensions: 124405
Number of successful extensions: 302
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 288
Number of HSP's gapped (non-prelim): 17
length of query: 106
length of database: 14,973,337
effective HSP length: 71
effective length of query: 35
effective length of database: 10,530,299
effective search space: 368560465
effective search space used: 368560465
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)