BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045258
(106 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P13917|7SB1_SOYBN Basic 7S globulin OS=Glycine max GN=BG PE=1 SV=2
Length = 427
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 22/122 (18%)
Query: 7 VVPLNSTLLSIDSQGFGGTKISTVNPYTALEKSIFKA-----EHTWHAFGGIRADHP--T 59
V PLN +I GGT IST P+ L++S+++A +++ P
Sbjct: 268 VFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAFTQVFAQQLPKQAQVKSVAPFGL 327
Query: 60 CFAENE---------------NVIWRIFDANSMVQVNEDMYCPGFVNGGSKPTTSIVIGG 104
CF N+ +WRI + MVQ + C G +NGG +P I +G
Sbjct: 328 CFNSNKINAYPSVDLVMDKPNGPVWRISGEDLMVQAQPGVTCLGVMNGGMQPRAEITLGA 387
Query: 105 HQ 106
Q
Sbjct: 388 RQ 389
>sp|Q8RVH5|7SBG2_SOYBN Basic 7S globulin 2 OS=Glycine max PE=1 SV=1
Length = 433
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 28/106 (26%), Positives = 45/106 (42%), Gaps = 22/106 (20%)
Query: 23 GGTKISTVNPYTALEKSIFKA-----EHTWHAFGGIRADHP--TCFAENE---------- 65
GGT IST P+ L++S+++A +++ P CF N+
Sbjct: 290 GGTMISTSTPHMVLQQSLYQAFTQVFAQQLEKQAQVKSVAPFGLCFNSNKINAYPSVDLV 349
Query: 66 -----NVIWRIFDANSMVQVNEDMYCPGFVNGGSKPTTSIVIGGHQ 106
+WRI + MVQ + C G +NGG +P + +G Q
Sbjct: 350 MDKPNGPVWRISGEDLMVQAQPGVTCLGVMNGGMQPRAEVTLGTRQ 395
>sp|C0MH92|EZRA_STRS7 Septation ring formation regulator EzrA OS=Streptococcus equi
subsp. zooepidemicus (strain H70) GN=ezrA PE=3 SV=1
Length = 574
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 29 TVNPYTALEKSIFKAEHTWHAFGGIRADHPTCFAENE 65
T+N +T +EK IF+AEH F IRA H E++
Sbjct: 80 TLNTFTDIEKHIFEAEHLNDTFNFIRAKHEINSVESQ 116
>sp|B4U2B4|EZRA_STREM Septation ring formation regulator EzrA OS=Streptococcus equi
subsp. zooepidemicus (strain MGCS10565) GN=ezrA PE=3
SV=1
Length = 574
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 29 TVNPYTALEKSIFKAEHTWHAFGGIRADHPTCFAENE 65
T+N +T +EK IF+AEH F IRA H E++
Sbjct: 80 TLNTFTDIEKHIFEAEHLNDTFNFIRAKHEINSVESQ 116
>sp|C0M6K2|EZRA_STRE4 Septation ring formation regulator EzrA OS=Streptococcus equi
subsp. equi (strain 4047) GN=ezrA PE=3 SV=1
Length = 574
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 29 TVNPYTALEKSIFKAEHTWHAFGGIRADHPTCFAENE 65
T+N +T +EK IF+AEH F IRA H E++
Sbjct: 80 TLNTFTDIEKHIFEAEHLNDTFNFIRAKHEINSVESQ 116
>sp|A2AI08|TPRN_MOUSE Taperin OS=Mus musculus GN=Tprn PE=1 SV=1
Length = 749
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 34/85 (40%), Gaps = 8/85 (9%)
Query: 19 SQGFGGTKISTVNPYTALEKSIFKAEHTWHAFGGIRADHPTCFAENENVIWR-------I 71
SQG G +STV+ ALEKS AE W G P ++ V W+
Sbjct: 403 SQGLGSQLVSTVDGAPALEKSPLAAEMQWAVRKGA-CPRPAISDTDKCVRWQRPASPPPF 461
Query: 72 FDANSMVQVNEDMYCPGFVNGGSKP 96
A + + E + PG G +P
Sbjct: 462 LPATAEAEPAEGLGVPGLAKNGQEP 486
>sp|P51784|UBP11_HUMAN Ubiquitin carboxyl-terminal hydrolase 11 OS=Homo sapiens GN=USP11
PE=1 SV=3
Length = 963
Score = 32.3 bits (72), Expect = 0.80, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 50 FGGIRADHPTCFAENENV-IWRIFDANSMVQVNED 83
+GG+R H T FA N++ W FD NS+ VNE+
Sbjct: 881 YGGMRDGHYTTFACNKDSGQWHYFDDNSVSPVNEN 915
>sp|Q99K46|UBP11_MOUSE Ubiquitin carboxyl-terminal hydrolase 11 OS=Mus musculus GN=Usp11
PE=2 SV=4
Length = 921
Score = 32.3 bits (72), Expect = 0.83, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 50 FGGIRADHPTCFAENENV-IWRIFDANSMVQVNED 83
+GG+R H T FA N++ W FD NS+ VNE+
Sbjct: 840 YGGMRDGHYTTFACNKDSGQWHYFDDNSVSPVNEN 874
>sp|Q5XHX2|TPRN_RAT Taperin OS=Rattus norvegicus GN=Tprn PE=2 SV=2
Length = 753
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 19 SQGFGGTKISTVNPYTALEKSIFKAEHTW 47
SQG G +STV+ ALEKS AE W
Sbjct: 404 SQGLGSQLVSTVDGAPALEKSSLAAEMQW 432
>sp|Q8C110|SLIK6_MOUSE SLIT and NTRK-like protein 6 OS=Mus musculus GN=Slitrk6 PE=2 SV=1
Length = 840
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 72 FDANSMVQVNEDMYCPGFVNGGSKPT-TSIVI 102
D + +N D+ CPG VN S PT T+ VI
Sbjct: 551 LDKKELKALNSDLLCPGLVNNPSMPTQTTYVI 582
>sp|A9KV86|FDHE_SHEB9 Protein FdhE homolog OS=Shewanella baltica (strain OS195) GN=fdhE
PE=3 SV=1
Length = 301
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 44 EHTWHAFGGIRADHPTCFAENENVIWRIFDANSMVQVNEDMYCPGFVN 91
E WH IRA +C + E IW + DA + V++ C G+
Sbjct: 211 ESEWHY---IRAHCTSCGQDKEMTIWSLDDAQAQVRIESCDECHGYTK 255
>sp|A6WHI5|FDHE_SHEB8 Protein FdhE homolog OS=Shewanella baltica (strain OS185) GN=fdhE
PE=3 SV=1
Length = 301
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 44 EHTWHAFGGIRADHPTCFAENENVIWRIFDANSMVQVNEDMYCPGFVN 91
E WH IRA +C + E IW + DA + V++ C G+
Sbjct: 211 ESEWHY---IRAHCTSCGQDKEMTIWSLDDAQAQVRIESCDECHGYTK 255
>sp|B8E3M2|FDHE_SHEB2 Protein FdhE homolog OS=Shewanella baltica (strain OS223) GN=fdhE
PE=3 SV=1
Length = 301
Score = 28.9 bits (63), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 44 EHTWHAFGGIRADHPTCFAENENVIWRIFDANSMVQVNEDMYCPGFVN 91
E WH IRA +C + E IW + DA + V++ C G+
Sbjct: 211 ESEWHY---IRAHCTSCGQDKEMTIWSLDDAQAQVRIESCDECHGYTK 255
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.420
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,448,842
Number of Sequences: 539616
Number of extensions: 1521509
Number of successful extensions: 2390
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 2380
Number of HSP's gapped (non-prelim): 18
length of query: 106
length of database: 191,569,459
effective HSP length: 75
effective length of query: 31
effective length of database: 151,098,259
effective search space: 4684046029
effective search space used: 4684046029
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)