BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045260
(355 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 180 bits (456), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 113/347 (32%), Positives = 181/347 (52%), Gaps = 16/347 (4%)
Query: 10 VPSVKELAENPMVAVPPRYIRPKQDAPVISDNTLISK------FPVIXXXXXXXXXXXXX 63
V V+ LA++ ++++P YIRPK++ I+D L K P I
Sbjct: 3 VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIR 62
Query: 64 XXA--KLDFACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYW--QYPGEVE 119
+L A +WG L+NHG+ L+++VKK +EFF+LS+EEK+KY Q G+++
Sbjct: 63 ENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQ 122
Query: 120 GFGQAFVVSEEQKLDWGDLFFMTTLPVHLRKPHLFPKLHPSLRDTLEVYSMEVNALAMNL 179
G+G + +L+W D FF P R ++PK + Y+ + LA +
Sbjct: 123 GYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKV 182
Query: 180 ISGMAKVLHIKDEEVRE---FFENGLQSMRMNYYPPCPQPEKVTGLTPHSDAVALTILLQ 236
++ L ++ + + + E L M++NYYP CPQPE G+ H+D ALT +L
Sbjct: 183 FKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH 242
Query: 237 INEAEGLQIKKDGKWFPIRPLPNAFIVNIGDVLEVITNGVYPSIEHRAVVNSEQERLSIA 296
N GLQ+ +GKW + +P++ +++IGD LE+++NG Y SI HR +VN E+ R+S A
Sbjct: 243 -NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWA 301
Query: 297 TFHTVNYDGEV-GPAPSLITEKTPALF-RRVTTEEFLKALFSRELHE 341
F D V P P +++ ++PA F R + LF +E E
Sbjct: 302 VFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFGKEQEE 348
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 180 bits (456), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 113/347 (32%), Positives = 181/347 (52%), Gaps = 16/347 (4%)
Query: 10 VPSVKELAENPMVAVPPRYIRPKQDAPVISDNTLISK------FPVIXXXXXXXXXXXXX 63
V V+ LA++ ++++P YIRPK++ I+D L K P I
Sbjct: 4 VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIR 63
Query: 64 XXA--KLDFACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYW--QYPGEVE 119
+L A +WG L+NHG+ L+++VKK +EFF+LS+EEK+KY Q G+++
Sbjct: 64 ENCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQ 123
Query: 120 GFGQAFVVSEEQKLDWGDLFFMTTLPVHLRKPHLFPKLHPSLRDTLEVYSMEVNALAMNL 179
G+G + +L+W D FF P R ++PK + Y+ + LA +
Sbjct: 124 GYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKV 183
Query: 180 ISGMAKVLHIKDEEVRE---FFENGLQSMRMNYYPPCPQPEKVTGLTPHSDAVALTILLQ 236
++ L ++ + + + E L M++NYYP CPQPE G+ H+D ALT +L
Sbjct: 184 FKALSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILH 243
Query: 237 INEAEGLQIKKDGKWFPIRPLPNAFIVNIGDVLEVITNGVYPSIEHRAVVNSEQERLSIA 296
N GLQ+ +GKW + +P++ +++IGD LE+++NG Y SI HR +VN E+ R+S A
Sbjct: 244 -NMVPGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWA 302
Query: 297 TFHTVNYDGEV-GPAPSLITEKTPALF-RRVTTEEFLKALFSRELHE 341
F D V P P +++ ++PA F R + LF +E E
Sbjct: 303 VFCEPPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFGKEQEE 349
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 175 bits (443), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 112/347 (32%), Positives = 177/347 (51%), Gaps = 16/347 (4%)
Query: 10 VPSVKELAENPMVAVPPRYIRPKQDAPVISDNTLISK------FPVIXXXXXXXXXXXXX 63
V V+ LA++ ++++P YIRPK++ I+D L K P I
Sbjct: 4 VERVESLAKSGIISIPKEYIRPKEELESINDVFLEEKKEDGPQVPTIDLKNIESDDEKIR 63
Query: 64 XXA--KLDFACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYW--QYPGEVE 119
+L A +WG L+NHG+ L ++VKK +EFF+LS+EEK+KY Q G+++
Sbjct: 64 ENCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQ 123
Query: 120 GFGQAFVVSEEQKLDWGDLFFMTTLPVHLRKPHLFPKLHPSLRDTLEVYSMEVNALAMNL 179
G+G + +L+W D FF P R ++PK + Y+ + LA +
Sbjct: 124 GYGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLATKV 183
Query: 180 ISGMAKVLHIKDEEVRE---FFENGLQSMRMNYYPPCPQPEKVTGLTPHSDAVALTILLQ 236
++ L ++ + + + E L ++NYYP CPQPE G+ H+D ALT +L
Sbjct: 184 FKALSVGLGLEPDRLEKEVGGLEELLLQXKINYYPKCPQPELALGVEAHTDVSALTFILH 243
Query: 237 INEAEGLQIKKDGKWFPIRPLPNAFIVNIGDVLEVITNGVYPSIEHRAVVNSEQERLSIA 296
N GLQ+ +GKW + +P++ + +IGD LE+++NG Y SI HR +VN E+ R+S A
Sbjct: 244 -NXVPGLQLFYEGKWVTAKCVPDSIVXHIGDTLEILSNGKYKSILHRGLVNKEKVRISWA 302
Query: 297 TFHTVNYDGEV-GPAPSLITEKTPALF-RRVTTEEFLKALFSRELHE 341
F D V P P ++ ++PA F R + LF +E E
Sbjct: 303 VFCEPPKDKIVLKPLPEXVSVESPAKFPPRTFAQHIEHKLFGKEQEE 349
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 149 bits (375), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 79/247 (31%), Positives = 129/247 (52%), Gaps = 10/247 (4%)
Query: 71 ACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYWQYPGEVEGFGQAFVVSEE 130
AC WGFF+LVNHG+ + D V+K + + E++ K +EG V +E
Sbjct: 27 ACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQRFKELVASKALEG-----VQAEV 81
Query: 131 QKLDWGDLFFMTTLPVHLRKPHLFPKLHPSLRDTLEVYSMEVNALAMNLISGMAKVLHIK 190
DW FF+ LP+ P L R+ ++ + LA L+ + + L ++
Sbjct: 82 TDXDWESTFFLKHLPIS--NISEVPDLDEEYREVXRDFAKRLEKLAEELLDLLCENLGLE 139
Query: 191 DEEVREFFENGLQ---SMRMNYYPPCPQPEKVTGLTPHSDAVALTILLQINEAEGLQIKK 247
++ F +++ YPPCP+P+ + GL H+DA + +L Q ++ GLQ+ K
Sbjct: 140 KGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLK 199
Query: 248 DGKWFPIRPLPNAFIVNIGDVLEVITNGVYPSIEHRAVVNSEQERLSIATFHTVNYDGEV 307
DG+W + P ++ +VN+GD LEVITNG Y S+ HR + + R S+A+F+ D +
Sbjct: 200 DGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIAQKDGARXSLASFYNPGSDAVI 259
Query: 308 GPAPSLI 314
PAP+L+
Sbjct: 260 YPAPALV 266
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
pdb|3OOX|B Chain B, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase
Family Protein (Cc_0200) From Caulobacter Crescentus At
1.44 A Resolution
Length = 312
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 130/282 (46%), Gaps = 19/282 (6%)
Query: 67 KLDFACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYWQYPGEVEGFGQAFV 126
+L + +GF L ++ + A +D + FF L +E KK+Y G G+ F
Sbjct: 25 ELGASFERYGFAVLSDYDLDQARIDAAVDSAKAFFALPVETKKQYAGVKGGARGY-IPFG 83
Query: 127 VSEEQKLDWGDL--FFMTTL---PVHLRKPH----LFPKLHPSLRDTLEVYSMEVNALAM 177
V + D DL F+ P H + H ++P P+ + + ++
Sbjct: 84 VETAKGADHYDLKEFWHXGRDLPPGHRFRAHXADNVWPAEIPAFKHDVSWLYNSLDGXGG 143
Query: 178 NLISGMAKVLHIKDEEVREFFENGLQSMRMNYYPPCPQPEKVTGLTPHSDAVALTILLQI 237
++ +A L ++ + + ++G +R+ +YPP P+ H D +T+LL
Sbjct: 144 KVLEAIATYLKLERDFFKPTVQDGNSVLRLLHYPPIPKDATGVRAGAHGDINTITLLLGA 203
Query: 238 NEAEGLQI-KKDGKWFPIRPLPNAFIVNIGDVLEVITNGVYPSIEHRAVVNSEQERLSIA 296
E GL++ +DG+W PI P P ++NIGD LE +TN V PS HR VVN ER +
Sbjct: 204 EEG-GLEVLDRDGQWLPINPPPGCLVINIGDXLERLTNNVLPSTVHR-VVNPPPERRGVP 261
Query: 297 TFHTVNY-----DGEVGPAPSLITEKTPALF-RRVTTEEFLK 332
+ T + D E+ + +T + P + +T +EFL+
Sbjct: 262 RYSTPFFLHFASDYEIKTLQNCVTAENPDRYPESITADEFLQ 303
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|B Chain B, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|C Chain C, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
pdb|3ON7|D Chain D, Crystal Structure Of A Putative Oxygenase (So_2589) From
Shewanella Oneidensis At 2.20 A Resolution
Length = 280
Score = 71.2 bits (173), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 80/281 (28%), Positives = 126/281 (44%), Gaps = 51/281 (18%)
Query: 71 ACREWGFFQLVNHGVSLALVDKVKKEIQEFFNLSMEEKKKYWQYPGEV-EGFGQAFVVSE 129
+ RE GF L NH + LV+++ E Q FFN E K + + E +GF A +SE
Sbjct: 21 SLRETGFGVLSNHPIDKELVERIYTEWQAFFN---SEAKNEFXFNRETHDGFFPA-SISE 76
Query: 130 EQKLDWGDLFFMTTLPVHLRKPHLFP--KLHPSLRDTLEVYSMEVNALAMNLISGMAKVL 187
K T+ H++P ++ SLR + Y + N LA L+ +
Sbjct: 77 TAK--------GHTVKDIKEYYHVYPWGRIPDSLRANILAYYEKANTLASELLEWIETY- 127
Query: 188 HIKDEEVR--------EFFENGLQSM-RMNYYPPCPQPEKVTGL--TPHSDAVALTILLQ 236
+E++ E N +++ R+ +YPP E+ + H D +T+L
Sbjct: 128 --SPDEIKAKFSIPLPEXIANSHKTLLRILHYPPXTGDEEXGAIRAAAHEDINLITVLPT 185
Query: 237 INEAEGLQIK-KDGKWFPIRPLPNAFIVNIGDVLEVITNGVYPSIEHRAVVNSE-----Q 290
NE GLQ+K KDG W + I+NIGD L+ ++G +PS HR V+N E +
Sbjct: 186 ANEP-GLQVKAKDGSWLDVPSDFGNIIINIGDXLQEASDGYFPSTSHR-VINPEGTDKTK 243
Query: 291 ERLSIATFHTVNYDGEVGPAPSLITEKTPALFRRVTTEEFL 331
R+S+ F + P PS++ L R T + +L
Sbjct: 244 SRISLPLF--------LHPHPSVV------LSERYTADSYL 270
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 116/272 (42%), Gaps = 35/272 (12%)
Query: 67 KLDFACREWGFFQLVNHGVSLALVDKVKKEI------QEFFNLSMEEKKKYWQYPGEVEG 120
++D A R+ GFF VNHG+++ + + KE +E ++L++ K ++ +V
Sbjct: 31 QIDAASRDTGFFYAVNHGINVQRLSQKTKEFHMSITPEEKWDLAIRAYNK--EHQDQVRA 88
Query: 121 FGQAFVVSEEQKLDWGDLFFMTTLPVHLR--------KPHLFPK--LHPSLRDTLEVYSM 170
G + ++ ++ P H R + +++P HP +D E Y
Sbjct: 89 -GYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEVNVWPDETKHPGFQDFAEQYYW 147
Query: 171 EVNALAMNLISGMAKVLHIKDEEVREFF--ENGLQSMRMNYYPPC-PQPEKVTGLTP--- 224
+V L+ L+ G A L ++ F ++ L S+ + YP P PE
Sbjct: 148 DVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVVLIRYPYLDPYPEAAIKTAADGT 207
Query: 225 ------HSDAVALTILLQINEAEGLQIKKDGKWFPIRPLPNAFIVNIGDVLEVITNGVYP 278
H D +T+L Q N + LQ++ + I +++N G + +TN Y
Sbjct: 208 KLSFEWHEDVSLITVLYQSN-VQNLQVETAAGYQDIEADDTGYLINCGSYMAHLTNNYYK 266
Query: 279 SIEHRAV-VNSEQERLSIATFHTVNYDGEVGP 309
+ HR VN+ ER S+ F + YD + P
Sbjct: 267 APIHRVKWVNA--ERQSLPFFVNLGYDSVIDP 296
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 116/272 (42%), Gaps = 35/272 (12%)
Query: 67 KLDFACREWGFFQLVNHGVSLALVDKVKKEI------QEFFNLSMEEKKKYWQYPGEVEG 120
++D A R+ GFF VNHG+++ + + KE +E ++L++ K ++ +V
Sbjct: 31 QIDAASRDTGFFYAVNHGINVQRLSQKTKEFHMSITPEEKWDLAIRAYNK--EHQDQVRA 88
Query: 121 FGQAFVVSEEQKLDWGDLFFMTTLPVHLR--------KPHLFPK--LHPSLRDTLEVYSM 170
G + ++ ++ P H R + +++P HP +D E Y
Sbjct: 89 -GYYLSIPGKKAVESFCYLNPNFTPDHPRIQAKTPTHEVNVWPDETKHPGFQDFAEQYYW 147
Query: 171 EVNALAMNLISGMAKVLHIKDEEVREFF--ENGLQSMRMNYYPPC-PQPEKVTGLTP--- 224
+V L+ L+ G A L ++ F ++ L S+ + YP P PE
Sbjct: 148 DVFGLSSALLKGYALALGKEENFFARHFKPDDTLASVVLIRYPYLDPYPEAAIKTAADGT 207
Query: 225 ------HSDAVALTILLQINEAEGLQIKKDGKWFPIRPLPNAFIVNIGDVLEVITNGVYP 278
H D +T+L Q N + LQ++ + I +++N G + +TN Y
Sbjct: 208 KLSFEWHEDVSLITVLYQSN-VQNLQVETAAGYQDIEADDTGYLINCGSYMAHLTNNYYK 266
Query: 279 SIEHRAV-VNSEQERLSIATFHTVNYDGEVGP 309
+ HR VN+ ER S+ F + YD + P
Sbjct: 267 APIHRVKWVNA--ERQSLPFFVNLGYDSVIDP 296
>pdb|3SZA|A Chain A, Crystal Structure Of Human Aldh3a1 - Apo Form
pdb|3SZA|B Chain B, Crystal Structure Of Human Aldh3a1 - Apo Form
pdb|3SZB|A Chain A, Crystal Structure Of Human Aldh3a1 Modified With The
Beta-Elimination Product Of Aldi-1; 1-Phenyl-
2-Propen-1-One
pdb|3SZB|B Chain B, Crystal Structure Of Human Aldh3a1 Modified With The
Beta-Elimination Product Of Aldi-1; 1-Phenyl-
2-Propen-1-One
Length = 469
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 19/87 (21%)
Query: 66 AKLDFACRE--WGFFQ------------LVNHGVSLALVDKVKKEIQEFFNLSMEEKKKY 111
LD ACR WG F L + + +V+K+KK ++EF+ E+ KK
Sbjct: 239 CDLDVACRRIAWGKFMNSGQTCVAPDYILCDPSIQNQIVEKLKKSLKEFYG---EDAKKS 295
Query: 112 WQYPGEVEG--FGQAFVVSEEQKLDWG 136
Y + F + + E QK+ +G
Sbjct: 296 RDYGRIISARHFQRVMGLIEGQKVAYG 322
>pdb|4G6F|H Chain H, Crystal Structure Of 10e8 Fab In Complex With An Hiv-1
Gp41 Peptide
pdb|4G6F|B Chain B, Crystal Structure Of 10e8 Fab In Complex With An Hiv-1
Gp41 Peptide
Length = 236
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Query: 99 EFFNLSMEEKKKYW-QYPGEVEGFGQAFVVSEEQKLDWGDLFFMTTLPVHLRKPHLFPKL 157
E NL ME+ Y+ G+ F + EE DWG +T + P +FP L
Sbjct: 84 EMNNLRMEDSGLYFCARTGKYYDFWSGYPPGEEYFQDWGRGTLVTVSSASTKGPSVFP-L 142
Query: 158 HPSLRDT 164
PS + T
Sbjct: 143 APSSKST 149
>pdb|4FO9|A Chain A, Crystal Structure Of The E3 Sumo Ligase Pias2
Length = 360
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/50 (24%), Positives = 27/50 (54%)
Query: 227 DAVALTILLQINEAEGLQIKKDGKWFPIRPLPNAFIVNIGDVLEVITNGV 276
D + + IL ++ + ++ ++DG W P+RP A V+ ++ ++ V
Sbjct: 272 DGLFMEILNDCSDVDEIKFQEDGSWCPMRPKKEAMKVSSQPCTKIESSSV 321
>pdb|2YY8|A Chain A, Crystal Structure Of Archaeal Trna-Methylase For Position
56 (Atrm56) From Pyrococcus Horikoshii, Complexed With
S- Adenosyl-L-Methionine
pdb|2YY8|B Chain B, Crystal Structure Of Archaeal Trna-Methylase For Position
56 (Atrm56) From Pyrococcus Horikoshii, Complexed With
S- Adenosyl-L-Methionine
Length = 201
Score = 27.7 bits (60), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 187 LHIKD--EEVREFFENGLQSMRMNYYPPCPQP-------EKVTGLTPHSDAVALTILLQI 237
LH+ D EE++E + G M + P+ G PHS+ AL +LL
Sbjct: 85 LHVDDVIEELKEKLKKGEDFMIIVGAEKVPREVYELADYNVAIGNQPHSEVAALAVLLD- 143
Query: 238 NEAEGLQIKKDGKWFPIRPLPNA 260
EG +KK+ K I+ +P A
Sbjct: 144 RLLEGKGLKKEFKGAKIKIVPQA 166
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,218,080
Number of Sequences: 62578
Number of extensions: 405557
Number of successful extensions: 1152
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1125
Number of HSP's gapped (non-prelim): 14
length of query: 355
length of database: 14,973,337
effective HSP length: 100
effective length of query: 255
effective length of database: 8,715,537
effective search space: 2222461935
effective search space used: 2222461935
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)