Query 045261
Match_columns 227
No_of_seqs 132 out of 1170
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 11:28:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045261.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045261hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.7 4.7E-17 1E-21 151.9 15.4 200 4-218 656-903 (1153)
2 PLN03210 Resistant to P. syrin 99.7 1.6E-16 3.5E-21 148.3 15.5 182 5-194 611-840 (1153)
3 PLN00113 leucine-rich repeat r 99.6 5.2E-15 1.1E-19 136.8 12.1 177 4-189 139-318 (968)
4 PLN00113 leucine-rich repeat r 99.6 6.8E-15 1.5E-19 136.1 11.8 179 3-190 162-343 (968)
5 KOG0617 Ras suppressor protein 99.2 2.5E-13 5.5E-18 97.9 -4.3 155 5-174 33-190 (264)
6 KOG4194 Membrane glycoprotein 99.1 6.8E-11 1.5E-15 99.7 2.8 159 3-174 147-334 (873)
7 PRK15370 E3 ubiquitin-protein 99.1 6.3E-10 1.4E-14 99.3 8.9 162 4-190 198-378 (754)
8 KOG4194 Membrane glycoprotein 99.0 2.7E-11 5.9E-16 102.1 -0.9 175 4-188 268-448 (873)
9 KOG0617 Ras suppressor protein 99.0 7.6E-12 1.6E-16 90.4 -4.2 136 4-152 55-191 (264)
10 PRK15370 E3 ubiquitin-protein 99.0 3E-09 6.4E-14 95.1 9.2 136 5-165 178-313 (754)
11 KOG0618 Serine/threonine phosp 99.0 2.4E-11 5.3E-16 106.8 -3.8 132 50-193 357-490 (1081)
12 PRK15386 type III secretion pr 98.9 2.4E-08 5.1E-13 82.6 12.4 163 4-194 51-215 (426)
13 PRK15387 E3 ubiquitin-protein 98.9 1.6E-08 3.5E-13 90.3 12.0 17 106-123 342-358 (788)
14 PRK15387 E3 ubiquitin-protein 98.9 2E-08 4.4E-13 89.7 11.5 48 5-59 222-269 (788)
15 KOG4658 Apoptotic ATPase [Sign 98.9 1.4E-09 3.1E-14 98.6 4.2 185 3-195 569-786 (889)
16 KOG0444 Cytoskeletal regulator 98.8 1.6E-10 3.5E-15 98.5 -3.2 173 4-191 6-185 (1255)
17 KOG0444 Cytoskeletal regulator 98.8 2.7E-10 5.9E-15 97.1 -2.5 175 4-193 196-376 (1255)
18 KOG0618 Serine/threonine phosp 98.8 2.7E-10 5.9E-15 100.4 -2.7 180 4-196 240-468 (1081)
19 KOG0472 Leucine-rich repeat pr 98.8 6.6E-11 1.4E-15 95.7 -6.7 172 5-193 114-311 (565)
20 KOG0472 Leucine-rich repeat pr 98.7 7.3E-10 1.6E-14 89.8 -2.2 126 5-144 183-308 (565)
21 KOG3207 Beta-tubulin folding c 98.7 1.7E-09 3.7E-14 88.3 -0.2 177 2-188 143-335 (505)
22 PRK15386 type III secretion pr 98.6 1.9E-07 4E-12 77.4 8.6 135 26-189 49-187 (426)
23 KOG4341 F-box protein containi 98.6 8.3E-10 1.8E-14 89.7 -6.3 192 7-205 140-346 (483)
24 cd00116 LRR_RI Leucine-rich re 98.5 4.2E-08 9.1E-13 79.7 2.1 175 4-190 50-261 (319)
25 KOG4341 F-box protein containi 98.5 1.9E-09 4.1E-14 87.7 -5.9 64 3-67 162-230 (483)
26 KOG4658 Apoptotic ATPase [Sign 98.5 4.8E-08 1E-12 88.9 1.9 178 4-191 544-729 (889)
27 KOG0532 Leucine-rich repeat (L 98.5 3.4E-09 7.3E-14 89.3 -5.5 164 10-190 80-245 (722)
28 cd00116 LRR_RI Leucine-rich re 98.4 3.2E-08 6.9E-13 80.4 -0.2 34 6-39 24-61 (319)
29 PF14580 LRR_9: Leucine-rich r 98.4 1.2E-07 2.5E-12 70.2 1.9 106 27-143 17-123 (175)
30 KOG4237 Extracellular matrix p 98.4 1.2E-08 2.7E-13 82.6 -3.5 79 106-189 274-356 (498)
31 KOG2120 SCF ubiquitin ligase, 98.3 1.7E-09 3.8E-14 84.6 -9.4 182 6-190 186-374 (419)
32 COG4886 Leucine-rich repeat (L 98.3 6.5E-07 1.4E-11 75.1 5.1 169 5-189 116-287 (394)
33 PF13855 LRR_8: Leucine rich r 98.3 1.3E-06 2.7E-11 53.1 4.7 59 79-143 1-59 (61)
34 KOG0532 Leucine-rich repeat (L 98.3 9.5E-08 2.1E-12 80.8 -0.8 147 4-167 120-271 (722)
35 KOG2120 SCF ubiquitin ligase, 98.3 2E-08 4.2E-13 78.8 -5.4 158 4-168 209-375 (419)
36 PLN03150 hypothetical protein; 98.2 3.2E-06 7E-11 75.0 7.2 111 31-150 420-532 (623)
37 PF14580 LRR_9: Leucine-rich r 98.2 1E-06 2.3E-11 65.1 2.8 132 42-189 9-150 (175)
38 KOG3207 Beta-tubulin folding c 98.1 4.4E-07 9.6E-12 74.5 -0.8 175 4-190 120-312 (505)
39 COG4886 Leucine-rich repeat (L 98.1 2.9E-06 6.3E-11 71.2 3.3 149 6-169 141-290 (394)
40 PF13855 LRR_8: Leucine rich r 98.0 1.1E-05 2.4E-10 48.9 4.9 53 5-59 1-56 (61)
41 KOG1259 Nischarin, modulator o 98.0 6.8E-07 1.5E-11 70.5 -1.7 123 7-142 286-408 (490)
42 KOG4237 Extracellular matrix p 98.0 4.9E-07 1.1E-11 73.5 -3.1 131 4-144 66-199 (498)
43 KOG1259 Nischarin, modulator o 97.9 3.9E-06 8.5E-11 66.3 1.8 176 3-190 180-410 (490)
44 PLN03150 hypothetical protein; 97.9 3.9E-05 8.5E-10 68.2 7.2 111 53-172 419-531 (623)
45 KOG1947 Leucine rich repeat pr 97.9 3.8E-07 8.3E-12 78.1 -5.5 115 4-120 187-309 (482)
46 PF12799 LRR_4: Leucine Rich r 97.7 4E-05 8.8E-10 43.1 3.0 40 5-46 1-40 (44)
47 KOG1947 Leucine rich repeat pr 97.6 3.6E-06 7.7E-11 72.1 -3.0 91 3-94 212-310 (482)
48 KOG3665 ZYG-1-like serine/thre 97.4 3.5E-05 7.5E-10 68.9 0.3 127 51-188 121-259 (699)
49 PF12799 LRR_4: Leucine Rich r 97.4 0.00011 2.4E-09 41.3 2.2 38 107-149 2-39 (44)
50 KOG1859 Leucine-rich repeat pr 97.4 3.3E-06 7.1E-11 73.8 -6.6 19 22-40 102-120 (1096)
51 KOG0531 Protein phosphatase 1, 97.4 4.2E-05 9.1E-10 64.7 -0.1 78 5-89 95-172 (414)
52 KOG3665 ZYG-1-like serine/thre 97.3 8.4E-05 1.8E-09 66.5 1.4 128 6-142 123-259 (699)
53 KOG0531 Protein phosphatase 1, 97.2 4.2E-05 9.2E-10 64.7 -2.2 126 6-148 73-200 (414)
54 KOG1644 U2-associated snRNP A' 96.3 0.018 3.8E-07 43.4 6.3 102 80-191 43-152 (233)
55 KOG1859 Leucine-rich repeat pr 96.1 0.00015 3.3E-09 63.8 -6.1 102 2-116 184-289 (1096)
56 PF00560 LRR_1: Leucine Rich R 95.9 0.0031 6.7E-08 29.6 0.7 21 6-27 1-21 (22)
57 KOG3864 Uncharacterized conser 95.9 0.00055 1.2E-08 51.2 -3.0 63 26-90 122-187 (221)
58 KOG1644 U2-associated snRNP A' 95.9 0.022 4.9E-07 42.9 5.3 107 30-143 43-150 (233)
59 KOG4579 Leucine-rich repeat (L 95.8 0.00035 7.6E-09 49.2 -4.3 60 76-142 50-109 (177)
60 PF13306 LRR_5: Leucine rich r 95.7 0.11 2.4E-06 35.9 8.1 104 24-142 7-112 (129)
61 KOG1909 Ran GTPase-activating 95.7 0.0027 5.8E-08 51.4 -0.3 177 4-191 91-310 (382)
62 KOG4579 Leucine-rich repeat (L 95.6 0.0013 2.9E-08 46.4 -2.0 112 31-155 29-144 (177)
63 PF13306 LRR_5: Leucine rich r 95.6 0.074 1.6E-06 36.8 6.9 116 4-136 11-129 (129)
64 KOG2739 Leucine-rich acidic nu 95.3 0.011 2.4E-07 46.1 1.9 87 50-146 41-129 (260)
65 KOG3864 Uncharacterized conser 95.3 0.0015 3.4E-08 48.9 -2.6 90 53-148 102-191 (221)
66 KOG2982 Uncharacterized conser 95.1 0.017 3.7E-07 46.1 2.6 83 4-89 70-156 (418)
67 KOG2123 Uncharacterized conser 95.0 0.00066 1.4E-08 53.4 -5.3 61 78-149 18-78 (388)
68 PF13504 LRR_7: Leucine rich r 94.6 0.024 5.2E-07 24.7 1.4 16 5-21 1-16 (17)
69 KOG2739 Leucine-rich acidic nu 93.6 0.044 9.5E-07 42.8 1.9 113 26-145 40-155 (260)
70 KOG2123 Uncharacterized conser 93.2 0.0028 6E-08 50.0 -5.2 104 28-139 18-123 (388)
71 KOG2982 Uncharacterized conser 91.6 0.068 1.5E-06 42.9 0.7 82 26-115 68-155 (418)
72 smart00367 LRR_CC Leucine-rich 90.6 0.16 3.5E-06 24.6 1.2 18 178-195 1-18 (26)
73 COG5238 RNA1 Ran GTPase-activa 85.7 0.66 1.4E-05 37.0 2.3 135 4-144 91-253 (388)
74 KOG1909 Ran GTPase-activating 85.5 0.2 4.4E-06 40.9 -0.5 111 3-118 183-310 (382)
75 smart00369 LRR_TYP Leucine-ric 81.5 1.3 2.9E-05 21.1 1.7 20 132-152 1-20 (26)
76 smart00370 LRR Leucine-rich re 81.5 1.3 2.9E-05 21.1 1.7 20 132-152 1-20 (26)
77 PF13516 LRR_6: Leucine Rich r 66.9 4.3 9.4E-05 18.9 1.3 11 5-15 2-12 (24)
78 smart00364 LRR_BAC Leucine-ric 64.0 5.1 0.00011 19.5 1.2 18 133-151 2-19 (26)
79 smart00365 LRR_SD22 Leucine-ri 44.1 19 0.00042 17.4 1.4 16 133-149 2-17 (26)
80 PF05725 FNIP: FNIP Repeat; I 39.7 65 0.0014 17.5 4.2 11 177-187 32-42 (44)
81 smart00368 LRR_RI Leucine rich 38.5 23 0.0005 17.2 1.3 11 5-15 2-12 (28)
82 COG5238 RNA1 Ran GTPase-activa 20.7 38 0.00082 27.4 0.3 13 178-190 213-225 (388)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.74 E-value=4.7e-17 Score=151.86 Aligned_cols=200 Identities=26% Similarity=0.420 Sum_probs=107.5
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccce
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRW 83 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~ 83 (227)
+++|+.|++++|..+..+|.+++++++|+.|++++|..+..+|....+++|+.|++ ++|..+. .++. ...+|++
T Consensus 656 l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~L-sgc~~L~-~~p~----~~~nL~~ 729 (1153)
T PLN03210 656 ATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNL-SGCSRLK-SFPD----ISTNISW 729 (1153)
T ss_pred CCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeC-CCCCCcc-cccc----ccCCcCe
Confidence 45555555555555555555555666666666666655555555444555666665 5554442 1110 0123333
Q ss_pred EEeccCCCCCccCccCc--C-------------------------CCCCCccceEEEecCCCccccCCCCCCccCCCCcc
Q 045261 84 LLIERCDESECFPDGMM--G-------------------------MTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLR 136 (227)
Q Consensus 84 L~l~~~~~l~~l~~~~~--~-------------------------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~ 136 (227)
|++.++ .+..+|.... . ...+++|+.|++++|+.+..+| .+++++++|+
T Consensus 730 L~L~~n-~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP---~si~~L~~L~ 805 (1153)
T PLN03210 730 LDLDET-AIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELP---SSIQNLHKLE 805 (1153)
T ss_pred eecCCC-ccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccC---hhhhCCCCCC
Confidence 333332 2222322110 0 0013466677777766666677 6677777777
Q ss_pred EEeecCCCCCccCCCCCCCCccceeeecCCCCCCCCCC---------------------CCCCCCCcEEeecCCchhhhh
Q 045261 137 RLLIQDCPNLTSLPKVGLPSSLLDLCIFNCPNLTSLPK---------------------VGLPSSLLELTIFDCPKLRKE 195 (227)
Q Consensus 137 ~L~l~~c~~l~~~~~~~~~~~L~~l~i~~c~~l~~~~~---------------------~~~~~~L~~L~l~~c~~l~~~ 195 (227)
.|++.+|+.++.+|....+++|+.|++++|..++.+|. ...+++|+.|++.+|.+++..
T Consensus 806 ~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l 885 (1153)
T PLN03210 806 HLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRV 885 (1153)
T ss_pred EEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCcc
Confidence 77777777777776654556667777776666554332 123567777777777777642
Q ss_pred hcccCCCCcccccccceEEeccC
Q 045261 196 CKRDKGKGWSKIANIPMFLIDDT 218 (227)
Q Consensus 196 ~~~~~~~~~~~~~~l~~~~~~~~ 218 (227)
.. ....+.++..+.+.+|
T Consensus 886 ~~-----~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 886 SL-----NISKLKHLETVDFSDC 903 (1153)
T ss_pred Cc-----ccccccCCCeeecCCC
Confidence 11 2233445555555544
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.72 E-value=1.6e-16 Score=148.29 Aligned_cols=182 Identities=31% Similarity=0.466 Sum_probs=127.3
Q ss_pred CCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccceE
Q 045261 5 ESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWL 84 (227)
Q Consensus 5 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L 84 (227)
.+|+.|+++++ .+..++.++..+++|+.++++++..+..+|....+++|+.|++ .+|..+. .+ +..++.+++|++|
T Consensus 611 ~~L~~L~L~~s-~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L-~~c~~L~-~l-p~si~~L~~L~~L 686 (1153)
T PLN03210 611 ENLVKLQMQGS-KLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKL-SDCSSLV-EL-PSSIQYLNKLEDL 686 (1153)
T ss_pred cCCcEEECcCc-cccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEe-cCCCCcc-cc-chhhhccCCCCEE
Confidence 46666777664 3566666777778888888877777777776667778888888 7777764 33 3356777788888
Q ss_pred EeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCC-----------------CCc------------------
Q 045261 85 LIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSS-----------------SGF------------------ 129 (227)
Q Consensus 85 ~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~-----------------~~l------------------ 129 (227)
++.+|..++.+|... .+++|+.|++++|..+..+|... ..+
T Consensus 687 ~L~~c~~L~~Lp~~i----~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l 762 (1153)
T PLN03210 687 DMSRCENLEILPTGI----NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKL 762 (1153)
T ss_pred eCCCCCCcCccCCcC----CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhc
Confidence 888877777777654 46677777777665554443000 100
Q ss_pred ------------cCCCCccEEeecCCCCCccCCCC-CCCCccceeeecCCCCCCCCCCCCCCCCCcEEeecCCchhhh
Q 045261 130 ------------HSLTSLRRLLIQDCPNLTSLPKV-GLPSSLLDLCIFNCPNLTSLPKVGLPSSLLELTIFDCPKLRK 194 (227)
Q Consensus 130 ------------~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~l~i~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~ 194 (227)
...++|++|++++|+.+..+|.. +.+++|++|++++|..++.+|....+++|++|++++|..+..
T Consensus 763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~ 840 (1153)
T PLN03210 763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRT 840 (1153)
T ss_pred cccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccc
Confidence 01246777777777777777764 557789999999999999888766688999999999977653
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.61 E-value=5.2e-15 Score=136.81 Aligned_cols=177 Identities=20% Similarity=0.245 Sum_probs=92.8
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCccc
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLR 82 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~ 82 (227)
+++|+.|++++|...+.+|..++++++|++|+++++.....+|.. ..+++|+.|++ +++. +.+. .+..++.+++|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L-~~n~-l~~~-~p~~l~~l~~L~ 215 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTL-ASNQ-LVGQ-IPRELGQMKSLK 215 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeec-cCCC-CcCc-CChHHcCcCCcc
Confidence 445555555555444455556666666666666665433344444 55666666666 5432 2212 233455666666
Q ss_pred eEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC-CCCCcccee
Q 045261 83 WLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV-GLPSSLLDL 161 (227)
Q Consensus 83 ~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~l 161 (227)
+|++.++.....+|..+. .+++|++|++++|.....+| ..++++++|++|+++++.-.+.+|.. ...++|++|
T Consensus 216 ~L~L~~n~l~~~~p~~l~---~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L 289 (968)
T PLN00113 216 WIYLGYNNLSGEIPYEIG---GLTSLNHLDLVYNNLTGPIP---SSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISL 289 (968)
T ss_pred EEECcCCccCCcCChhHh---cCCCCCEEECcCceeccccC---hhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEE
Confidence 666666544444555443 45666666666644334455 55566666666666654333333332 234455666
Q ss_pred eecCCCCCCCCCCC-CCCCCCcEEeecCC
Q 045261 162 CIFNCPNLTSLPKV-GLPSSLLELTIFDC 189 (227)
Q Consensus 162 ~i~~c~~l~~~~~~-~~~~~L~~L~l~~c 189 (227)
++++|...+.+|.. ..+++|++|++.+|
T Consensus 290 ~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n 318 (968)
T PLN00113 290 DLSDNSLSGEIPELVIQLQNLEILHLFSN 318 (968)
T ss_pred ECcCCeeccCCChhHcCCCCCcEEECCCC
Confidence 66655443344331 23455555555544
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.60 E-value=6.8e-15 Score=136.06 Aligned_cols=179 Identities=18% Similarity=0.172 Sum_probs=128.1
Q ss_pred CCCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCcc
Q 045261 3 LPESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSL 81 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L 81 (227)
-+++|+.|++++|...+.+|..+.++++|++|++++|.....+|.. ..+++|+.|++ .++ .+.+. .+..++.+++|
T Consensus 162 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L-~~n-~l~~~-~p~~l~~l~~L 238 (968)
T PLN00113 162 SFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYL-GYN-NLSGE-IPYEIGGLTSL 238 (968)
T ss_pred cCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEEC-cCC-ccCCc-CChhHhcCCCC
Confidence 3678999999998777788888999999999999988755566665 78889999999 664 44423 34457888899
Q ss_pred ceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC-CCCCccce
Q 045261 82 RWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV-GLPSSLLD 160 (227)
Q Consensus 82 ~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~ 160 (227)
++|++.+|.....+|..+. .+++|+.|+++++.....+| ..+.++++|++|++++|.-...+|.. ...++|+.
T Consensus 239 ~~L~L~~n~l~~~~p~~l~---~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 312 (968)
T PLN00113 239 NHLDLVYNNLTGPIPSSLG---NLKNLQYLFLYQNKLSGPIP---PSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEI 312 (968)
T ss_pred CEEECcCceeccccChhHh---CCCCCCEEECcCCeeeccCc---hhHhhccCcCEEECcCCeeccCCChhHcCCCCCcE
Confidence 9999988755556776665 67788888888765445566 67777888888888876544445542 34567777
Q ss_pred eeecCCCCCCCCCCC-CCCCCCcEEeecCCc
Q 045261 161 LCIFNCPNLTSLPKV-GLPSSLLELTIFDCP 190 (227)
Q Consensus 161 l~i~~c~~l~~~~~~-~~~~~L~~L~l~~c~ 190 (227)
|+++++...+.+|.. ..+++|+.|++++|.
T Consensus 313 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~ 343 (968)
T PLN00113 313 LHLFSNNFTGKIPVALTSLPRLQVLQLWSNK 343 (968)
T ss_pred EECCCCccCCcCChhHhcCCCCCEEECcCCC
Confidence 777776655555432 345677777777654
No 5
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.22 E-value=2.5e-13 Score=97.94 Aligned_cols=155 Identities=25% Similarity=0.395 Sum_probs=118.9
Q ss_pred CCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCccce
Q 045261 5 ESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRW 83 (227)
Q Consensus 5 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~ 83 (227)
.+.+.|.+|+ ++++.+|..+..+.+|+.|++++ .+++.+|.. ..+++|+.|++ +.+.+ .+.|.+|++++.|+.
T Consensus 33 s~ITrLtLSH-NKl~~vppnia~l~nlevln~~n-nqie~lp~~issl~klr~lnv--gmnrl--~~lprgfgs~p~lev 106 (264)
T KOG0617|consen 33 SNITRLTLSH-NKLTVVPPNIAELKNLEVLNLSN-NQIEELPTSISSLPKLRILNV--GMNRL--NILPRGFGSFPALEV 106 (264)
T ss_pred hhhhhhhccc-CceeecCCcHHHhhhhhhhhccc-chhhhcChhhhhchhhhheec--chhhh--hcCccccCCCchhhh
Confidence 4567788888 46788888899999999999987 468999988 88999999998 66777 456778999999999
Q ss_pred EEeccCCCC-CccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC-CCCCcccee
Q 045261 84 LLIERCDES-ECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV-GLPSSLLDL 161 (227)
Q Consensus 84 L~l~~~~~l-~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~l 161 (227)
|++.++..- ..+|..+. .+..|+.|.+++ +...-+| ..++.+++|+-|.+.+ +.+-++|.+ +....|++|
T Consensus 107 ldltynnl~e~~lpgnff---~m~tlralyl~d-ndfe~lp---~dvg~lt~lqil~lrd-ndll~lpkeig~lt~lrel 178 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFF---YMTTLRALYLGD-NDFEILP---PDVGKLTNLQILSLRD-NDLLSLPKEIGDLTRLREL 178 (264)
T ss_pred hhccccccccccCCcchh---HHHHHHHHHhcC-CCcccCC---hhhhhhcceeEEeecc-CchhhCcHHHHHHHHHHHH
Confidence 999986222 23565543 566778888887 6777788 7888888888888888 566677765 667778888
Q ss_pred eecCCCCCCCCCC
Q 045261 162 CIFNCPNLTSLPK 174 (227)
Q Consensus 162 ~i~~c~~l~~~~~ 174 (227)
.|.+. .++.+|+
T Consensus 179 hiqgn-rl~vlpp 190 (264)
T KOG0617|consen 179 HIQGN-RLTVLPP 190 (264)
T ss_pred hcccc-eeeecCh
Confidence 88763 4555543
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.06 E-value=6.8e-11 Score=99.74 Aligned_cols=159 Identities=18% Similarity=0.274 Sum_probs=82.8
Q ss_pred CCCCccEEEeccCCCCCcCCc-ccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCC
Q 045261 3 LPESISSVEIRRCEKLGALPS-DMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLT 79 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~ 79 (227)
+++.|+.|++|. +.+.++|. ++..=.++++|++++. .++.+... ..+.+|..|.+ ++ +.++ .+++..|++++
T Consensus 147 ~l~alrslDLSr-N~is~i~~~sfp~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkL-sr-Nrit-tLp~r~Fk~L~ 221 (873)
T KOG4194|consen 147 ALPALRSLDLSR-NLISEIPKPSFPAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKL-SR-NRIT-TLPQRSFKRLP 221 (873)
T ss_pred hHhhhhhhhhhh-chhhcccCCCCCCCCCceEEeeccc-cccccccccccccchheeeec-cc-Cccc-ccCHHHhhhcc
Confidence 345566666666 34444442 2222334555555543 34444333 33444555554 32 3333 33444444444
Q ss_pred ccceEEe------------------------ccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCc
Q 045261 80 SLRWLLI------------------------ERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSL 135 (227)
Q Consensus 80 ~L~~L~l------------------------~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L 135 (227)
+|+.|++ ..+ .+..+.++.. -.+.++++|++.. +.+..+. ..|+-++++|
T Consensus 222 ~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN-~I~kL~DG~F--y~l~kme~l~L~~-N~l~~vn--~g~lfgLt~L 295 (873)
T KOG4194|consen 222 KLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRN-DISKLDDGAF--YGLEKMEHLNLET-NRLQAVN--EGWLFGLTSL 295 (873)
T ss_pred hhhhhhccccceeeehhhhhcCchhhhhhhhhhc-CcccccCcce--eeecccceeeccc-chhhhhh--cccccccchh
Confidence 4444444 433 3333433321 1244556666655 5555555 5677788888
Q ss_pred cEEeecCCCCCccCCC--CCCCCccceeeecCCCCCCCCCC
Q 045261 136 RRLLIQDCPNLTSLPK--VGLPSSLLDLCIFNCPNLTSLPK 174 (227)
Q Consensus 136 ~~L~l~~c~~l~~~~~--~~~~~~L~~l~i~~c~~l~~~~~ 174 (227)
++|++++ +.+..+.. +.+.++|++|+++++ .++.++.
T Consensus 296 ~~L~lS~-NaI~rih~d~WsftqkL~~LdLs~N-~i~~l~~ 334 (873)
T KOG4194|consen 296 EQLDLSY-NAIQRIHIDSWSFTQKLKELDLSSN-RITRLDE 334 (873)
T ss_pred hhhccch-hhhheeecchhhhcccceeEecccc-ccccCCh
Confidence 8888887 66776633 456778888888763 3444443
No 7
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.06 E-value=6.3e-10 Score=99.34 Aligned_cols=162 Identities=23% Similarity=0.414 Sum_probs=84.5
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccce
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRW 83 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~ 83 (227)
.++|+.|++++| .++.+|..+. ++|+.|+++++. +..+|.. ...+|+.|++ +++ .+. .++.. + .++|+.
T Consensus 198 p~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~-l~~~L~~L~L-s~N-~L~-~LP~~-l--~s~L~~ 266 (754)
T PRK15370 198 PEQITTLILDNN-ELKSLPENLQ--GNIKTLYANSNQ-LTSIPAT-LPDTIQEMEL-SIN-RIT-ELPER-L--PSALQS 266 (754)
T ss_pred ccCCcEEEecCC-CCCcCChhhc--cCCCEEECCCCc-cccCChh-hhccccEEEC-cCC-ccC-cCChh-H--hCCCCE
Confidence 456777777774 5666765443 467777776653 5555542 3345666666 443 232 22211 1 134555
Q ss_pred EEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCcc-------------------CCCCccEEeecCCC
Q 045261 84 LLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFH-------------------SLTSLRRLLIQDCP 144 (227)
Q Consensus 84 L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~-------------------~l~~L~~L~l~~c~ 144 (227)
|+++++ .+..+|..+ +++|+.|++++ +.+..+| ..+. -.++|+.|++++|
T Consensus 267 L~Ls~N-~L~~LP~~l-----~~sL~~L~Ls~-N~Lt~LP---~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N- 335 (754)
T PRK15370 267 LDLFHN-KISCLPENL-----PEELRYLSVYD-NSIRTLP---AHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGEN- 335 (754)
T ss_pred EECcCC-ccCcccccc-----CCCCcEEECCC-CccccCc---ccchhhHHHHHhcCCccccCCccccccceeccccCC-
Confidence 555543 444454432 23455555554 2333333 1110 1245666666663
Q ss_pred CCccCCCCCCCCccceeeecCCCCCCCCCCCCCCCCCcEEeecCCc
Q 045261 145 NLTSLPKVGLPSSLLDLCIFNCPNLTSLPKVGLPSSLLELTIFDCP 190 (227)
Q Consensus 145 ~l~~~~~~~~~~~L~~l~i~~c~~l~~~~~~~~~~~L~~L~l~~c~ 190 (227)
.+..+|. ...++|+.|++++|. +..+|. .+.++|++|++++|.
T Consensus 336 ~Lt~LP~-~l~~sL~~L~Ls~N~-L~~LP~-~lp~~L~~LdLs~N~ 378 (754)
T PRK15370 336 ALTSLPA-SLPPELQVLDVSKNQ-ITVLPE-TLPPTITTLDVSRNA 378 (754)
T ss_pred ccccCCh-hhcCcccEEECCCCC-CCcCCh-hhcCCcCEEECCCCc
Confidence 4555554 234577777777653 444543 234677777777763
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.03 E-value=2.7e-11 Score=102.07 Aligned_cols=175 Identities=21% Similarity=0.279 Sum_probs=109.3
Q ss_pred CCCccEEEeccCCCCCcCC-cccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCc
Q 045261 4 PESISSVEIRRCEKLGALP-SDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTS 80 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~ 80 (227)
+.+++.|+++.+ .+.++. .++.+|++|+.|++++. .+..+-.. .+.++|++|++ +. ++++ .+.+..+..++.
T Consensus 268 l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~lS~N-aI~rih~d~WsftqkL~~LdL-s~-N~i~-~l~~~sf~~L~~ 342 (873)
T KOG4194|consen 268 LEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLDLSYN-AIQRIHIDSWSFTQKLKELDL-SS-NRIT-RLDEGSFRVLSQ 342 (873)
T ss_pred ecccceeecccc-hhhhhhcccccccchhhhhccchh-hhheeecchhhhcccceeEec-cc-cccc-cCChhHHHHHHH
Confidence 345666666663 333433 45677777888877764 46655444 67788888888 44 6665 555666777777
Q ss_pred cceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCC--CCCcc
Q 045261 81 LRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVG--LPSSL 158 (227)
Q Consensus 81 L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~--~~~~L 158 (227)
|++|.++.+ .+.++.++.. ..+.+|+.||++.+.--..+.-+...+..+++|+.|.+.+ ++++.+++.. -+.+|
T Consensus 343 Le~LnLs~N-si~~l~e~af--~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~L 418 (873)
T KOG4194|consen 343 LEELNLSHN-SIDHLAEGAF--VGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEAL 418 (873)
T ss_pred hhhhccccc-chHHHHhhHH--HHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCccc
Confidence 777777775 5666554433 2567888888877332222321235566788888888888 6788888753 35678
Q ss_pred ceeeecCCCCCCCCCCCCC-CCCCcEEeecC
Q 045261 159 LDLCIFNCPNLTSLPKVGL-PSSLLELTIFD 188 (227)
Q Consensus 159 ~~l~i~~c~~l~~~~~~~~-~~~L~~L~l~~ 188 (227)
++|++.++. +.++....+ ...|++|.+..
T Consensus 419 E~LdL~~Na-iaSIq~nAFe~m~Lk~Lv~nS 448 (873)
T KOG4194|consen 419 EHLDLGDNA-IASIQPNAFEPMELKELVMNS 448 (873)
T ss_pred ceecCCCCc-ceeecccccccchhhhhhhcc
Confidence 888887754 344433222 23666666553
No 9
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.01 E-value=7.6e-12 Score=90.36 Aligned_cols=136 Identities=24% Similarity=0.320 Sum_probs=114.6
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCccc
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLR 82 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~ 82 (227)
+.+|+.|++++ +.+.++|.+++.+++|+.|++.- ..+..+|.. +.++-|+.|++ .. +++.+...|.-|-.++.|+
T Consensus 55 l~nlevln~~n-nqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p~levldl-ty-nnl~e~~lpgnff~m~tlr 130 (264)
T KOG0617|consen 55 LKNLEVLNLSN-NQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFPALEVLDL-TY-NNLNENSLPGNFFYMTTLR 130 (264)
T ss_pred hhhhhhhhccc-chhhhcChhhhhchhhhheecch-hhhhcCccccCCCchhhhhhc-cc-cccccccCCcchhHHHHHH
Confidence 46889999998 46889999999999999999964 567778877 89999999999 65 6666565666566677788
Q ss_pred eEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC
Q 045261 83 WLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV 152 (227)
Q Consensus 83 ~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~ 152 (227)
-|.++.+ ..+.+|...+ .+.+|+.|.+.+ +.+-++| .+++.++.|++|.|.+ +.+..+|.+
T Consensus 131 alyl~dn-dfe~lp~dvg---~lt~lqil~lrd-ndll~lp---keig~lt~lrelhiqg-nrl~vlppe 191 (264)
T KOG0617|consen 131 ALYLGDN-DFEILPPDVG---KLTNLQILSLRD-NDLLSLP---KEIGDLTRLRELHIQG-NRLTVLPPE 191 (264)
T ss_pred HHHhcCC-CcccCChhhh---hhcceeEEeecc-CchhhCc---HHHHHHHHHHHHhccc-ceeeecChh
Confidence 8888886 7788999887 789999999999 7888899 9999999999999999 778888774
No 10
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.96 E-value=3e-09 Score=95.09 Aligned_cols=136 Identities=19% Similarity=0.358 Sum_probs=96.5
Q ss_pred CCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccceE
Q 045261 5 ESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWL 84 (227)
Q Consensus 5 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L 84 (227)
.+...|.+++. .++.+|..+. ++|+.|+++++ .+..+|.. ...+|+.|++ ++ ++++ .++. .+ ..+|+.|
T Consensus 178 ~~~~~L~L~~~-~LtsLP~~Ip--~~L~~L~Ls~N-~LtsLP~~-l~~nL~~L~L-s~-N~Lt-sLP~-~l--~~~L~~L 246 (754)
T PRK15370 178 NNKTELRLKIL-GLTTIPACIP--EQITTLILDNN-ELKSLPEN-LQGNIKTLYA-NS-NQLT-SIPA-TL--PDTIQEM 246 (754)
T ss_pred cCceEEEeCCC-CcCcCCcccc--cCCcEEEecCC-CCCcCChh-hccCCCEEEC-CC-Cccc-cCCh-hh--hccccEE
Confidence 46778999984 6778886553 57999999886 58888875 4579999999 76 4565 4432 22 2479999
Q ss_pred EeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccceeeec
Q 045261 85 LIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCIF 164 (227)
Q Consensus 85 ~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~i~ 164 (227)
++++| .+..+|..+ +.+|+.|++++ +.+..+| ..+. ++|+.|++++| .+..+|.. ..++|+.|+++
T Consensus 247 ~Ls~N-~L~~LP~~l-----~s~L~~L~Ls~-N~L~~LP---~~l~--~sL~~L~Ls~N-~Lt~LP~~-lp~sL~~L~Ls 312 (754)
T PRK15370 247 ELSIN-RITELPERL-----PSALQSLDLFH-NKISCLP---ENLP--EELRYLSVYDN-SIRTLPAH-LPSGITHLNVQ 312 (754)
T ss_pred ECcCC-ccCcCChhH-----hCCCCEEECcC-CccCccc---cccC--CCCcEEECCCC-ccccCccc-chhhHHHHHhc
Confidence 99997 677888755 46899999986 7888888 5443 58999999884 67766642 22334444444
Q ss_pred C
Q 045261 165 N 165 (227)
Q Consensus 165 ~ 165 (227)
+
T Consensus 313 ~ 313 (754)
T PRK15370 313 S 313 (754)
T ss_pred C
Confidence 3
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.96 E-value=2.4e-11 Score=106.83 Aligned_cols=132 Identities=22% Similarity=0.248 Sum_probs=98.5
Q ss_pred CCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCc
Q 045261 50 FPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGF 129 (227)
Q Consensus 50 ~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l 129 (227)
..+.|+.|.+ .+ +.+++...| .+.++.+|+.|+++++ .+..+|.... ..+..|++|++++ +.++.+| ..+
T Consensus 357 ~~~~Lq~Lyl-an-N~Ltd~c~p-~l~~~~hLKVLhLsyN-rL~~fpas~~--~kle~LeeL~LSG-NkL~~Lp---~tv 426 (1081)
T KOG0618|consen 357 NHAALQELYL-AN-NHLTDSCFP-VLVNFKHLKVLHLSYN-RLNSFPASKL--RKLEELEELNLSG-NKLTTLP---DTV 426 (1081)
T ss_pred hhHHHHHHHH-hc-Ccccccchh-hhccccceeeeeeccc-ccccCCHHHH--hchHHhHHHhccc-chhhhhh---HHH
Confidence 3445555555 33 555544444 4677888999999986 8888887654 3678889999998 8899998 888
Q ss_pred cCCCCccEEeecCCCCCccCCCCCCCCccceeeecCCCCCCCCCC-CCCC-CCCcEEeecCCchhh
Q 045261 130 HSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCIFNCPNLTSLPK-VGLP-SSLLELTIFDCPKLR 193 (227)
Q Consensus 130 ~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~i~~c~~l~~~~~-~~~~-~~L~~L~l~~c~~l~ 193 (227)
..+..|++|.-.+ +.+..+|+....+.|+.+|++. +.+..+.. .... ++|++|+++|...+.
T Consensus 427 a~~~~L~tL~ahs-N~l~~fPe~~~l~qL~~lDlS~-N~L~~~~l~~~~p~p~LkyLdlSGN~~l~ 490 (1081)
T KOG0618|consen 427 ANLGRLHTLRAHS-NQLLSFPELAQLPQLKVLDLSC-NNLSEVTLPEALPSPNLKYLDLSGNTRLV 490 (1081)
T ss_pred HhhhhhHHHhhcC-CceeechhhhhcCcceEEeccc-chhhhhhhhhhCCCcccceeeccCCcccc
Confidence 8899999987777 7788999777888999999984 55655432 2334 899999999987643
No 12
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.92 E-value=2.4e-08 Score=82.63 Aligned_cols=163 Identities=23% Similarity=0.446 Sum_probs=96.6
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccce
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRW 83 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~ 83 (227)
+++++.|++++| .+..+|. --.+|++|.+++|..+..+|.. .+++|+.|.+ ++|..+. .++ .+|+.
T Consensus 51 ~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~-LP~nLe~L~L-s~Cs~L~-sLP-------~sLe~ 116 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPGS-IPEGLEKLTV-CHCPEIS-GLP-------ESVRS 116 (426)
T ss_pred hcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCch-hhhhhhheEc-cCccccc-ccc-------cccce
Confidence 467778888877 5666662 1235778888877777666642 4567888888 7776554 222 24666
Q ss_pred EEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCC-CCccEEeecCCCCCccCCCCCCCCccceee
Q 045261 84 LLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSL-TSLRRLLIQDCPNLTSLPKVGLPSSLLDLC 162 (227)
Q Consensus 84 L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l-~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~ 162 (227)
|++... ....++. .+++|+.|.+.+++.....+ .. ..+ ++|++|++.+|..+ .+|. ..+.+|+.|+
T Consensus 117 L~L~~n-~~~~L~~------LPssLk~L~I~~~n~~~~~~---lp-~~LPsSLk~L~Is~c~~i-~LP~-~LP~SLk~L~ 183 (426)
T PRK15386 117 LEIKGS-ATDSIKN------VPNGLTSLSINSYNPENQAR---ID-NLISPSLKTLSLTGCSNI-ILPE-KLPESLQSIT 183 (426)
T ss_pred EEeCCC-CCccccc------CcchHhheeccccccccccc---cc-cccCCcccEEEecCCCcc-cCcc-cccccCcEEE
Confidence 666542 3222221 34567777775433211111 00 123 58999999988755 3443 3667899999
Q ss_pred ecCCCCC-CCCCCCCCCCCCcEEeecCCchhhh
Q 045261 163 IFNCPNL-TSLPKVGLPSSLLELTIFDCPKLRK 194 (227)
Q Consensus 163 i~~c~~l-~~~~~~~~~~~L~~L~l~~c~~l~~ 194 (227)
++.+... -.++...+.+++ .|.+.+|.++..
T Consensus 184 ls~n~~~sLeI~~~sLP~nl-~L~f~n~lkL~~ 215 (426)
T PRK15386 184 LHIEQKTTWNISFEGFPDGL-DIDLQNSVLLSP 215 (426)
T ss_pred ecccccccccCccccccccc-EechhhhcccCH
Confidence 8764321 123333455677 888888866654
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.91 E-value=1.6e-08 Score=90.35 Aligned_cols=17 Identities=24% Similarity=0.503 Sum_probs=10.1
Q ss_pred CccceEEEecCCCccccC
Q 045261 106 TSLVHLNIVEFQKLKNLS 123 (227)
Q Consensus 106 ~~L~~L~l~~~~~l~~l~ 123 (227)
.+|+.|++++ +.+..+|
T Consensus 342 ~~Lq~LdLS~-N~Ls~LP 358 (788)
T PRK15387 342 SGLQELSVSD-NQLASLP 358 (788)
T ss_pred cccceEecCC-CccCCCC
Confidence 3566666665 4555555
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.88 E-value=2e-08 Score=89.70 Aligned_cols=48 Identities=27% Similarity=0.470 Sum_probs=24.4
Q ss_pred CCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEe
Q 045261 5 ESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAI 59 (227)
Q Consensus 5 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l 59 (227)
++|+.|.+++| .++.+|. ..++|++|+++++ .+..+|. .+++|+.|++
T Consensus 222 ~~L~~L~L~~N-~Lt~LP~---lp~~Lk~LdLs~N-~LtsLP~--lp~sL~~L~L 269 (788)
T PRK15387 222 AHITTLVIPDN-NLTSLPA---LPPELRTLEVSGN-QLTSLPV--LPPGLLELSI 269 (788)
T ss_pred cCCCEEEccCC-cCCCCCC---CCCCCcEEEecCC-ccCcccC--cccccceeec
Confidence 34555555552 3444543 2355666666554 3555543 2445555555
No 15
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.88 E-value=1.4e-09 Score=98.61 Aligned_cols=185 Identities=24% Similarity=0.247 Sum_probs=126.9
Q ss_pred CCCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCcc
Q 045261 3 LPESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSL 81 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L 81 (227)
.+|.|+.|++++|..++++|+.++.|-+|++|+++++ .+..+|.. ..+.+|.+|++ ..+..+. .+ +.....+++|
T Consensus 569 ~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~~Lnl-~~~~~l~-~~-~~i~~~L~~L 644 (889)
T KOG4658|consen 569 SLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLIYLNL-EVTGRLE-SI-PGILLELQSL 644 (889)
T ss_pred hCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhheecc-ccccccc-cc-cchhhhcccc
Confidence 4789999999999999999999999999999999985 58899988 88899999999 7666654 32 4455669999
Q ss_pred ceEEeccCCCCCccCccCcCCCCCCccceEEEecCCC-------------------------ccccCCCCCCccCCCCcc
Q 045261 82 RWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQK-------------------------LKNLSSSSSGFHSLTSLR 136 (227)
Q Consensus 82 ~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~-------------------------l~~l~~~~~~l~~l~~L~ 136 (227)
++|.+.... ...-.........+..|+.+.+..... ..... ..+..+.+|+
T Consensus 645 r~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~---~~~~~l~~L~ 720 (889)
T KOG4658|consen 645 RVLRLPRSA-LSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGCSKRTLI---SSLGSLGNLE 720 (889)
T ss_pred cEEEeeccc-cccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhcccccceee---cccccccCcc
Confidence 999887642 100000000011344444444433211 11122 4556778999
Q ss_pred EEeecCCCCCccCCCC------CC-CCccceeeecCCCCCCCCCCCCCCCCCcEEeecCCchhhhh
Q 045261 137 RLLIQDCPNLTSLPKV------GL-PSSLLDLCIFNCPNLTSLPKVGLPSSLLELTIFDCPKLRKE 195 (227)
Q Consensus 137 ~L~l~~c~~l~~~~~~------~~-~~~L~~l~i~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~~ 195 (227)
.|.|.+|...+..... .. ++++..+.+.+|..+++..+..+.++|+.|.+.+|..+.+.
T Consensus 721 ~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~ 786 (889)
T KOG4658|consen 721 ELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDI 786 (889)
T ss_pred eEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccC
Confidence 9999998765432211 11 44666777778888888877777889999999988766643
No 16
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.83 E-value=1.6e-10 Score=98.50 Aligned_cols=173 Identities=18% Similarity=0.265 Sum_probs=123.3
Q ss_pred CCCccEEEeccCCCC-CcCCcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCcc
Q 045261 4 PESISSVEIRRCEKL-GALPSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSL 81 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l-~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L 81 (227)
+|-.+-.+++++... ..+|+.+..++.++.|.+.. +.+..+|.. +.+++|+.|.+ .. +++. .+ ...+..++.|
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnr-t~L~~vPeEL~~lqkLEHLs~-~H-N~L~-~v-hGELs~Lp~L 80 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNR-TKLEQVPEELSRLQKLEHLSM-AH-NQLI-SV-HGELSDLPRL 80 (1255)
T ss_pred cceeecccccCCcCCCCcCchhHHHhhheeEEEech-hhhhhChHHHHHHhhhhhhhh-hh-hhhH-hh-hhhhccchhh
Confidence 455667788887776 45888888888888888877 457788877 78888888888 44 5554 22 2346777888
Q ss_pred ceEEeccCCCCC--ccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCC--CCCc
Q 045261 82 RWLLIERCDESE--CFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVG--LPSS 157 (227)
Q Consensus 82 ~~L~l~~~~~l~--~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~--~~~~ 157 (227)
+.+.++.+ +++ -+|..+. .+..|..||++. +.++++| ..+.+-.++-.|++++ +.++++|... .++-
T Consensus 81 Rsv~~R~N-~LKnsGiP~diF---~l~dLt~lDLSh-NqL~EvP---~~LE~AKn~iVLNLS~-N~IetIPn~lfinLtD 151 (1255)
T KOG0444|consen 81 RSVIVRDN-NLKNSGIPTDIF---RLKDLTILDLSH-NQLREVP---TNLEYAKNSIVLNLSY-NNIETIPNSLFINLTD 151 (1255)
T ss_pred HHHhhhcc-ccccCCCCchhc---ccccceeeecch-hhhhhcc---hhhhhhcCcEEEEccc-CccccCCchHHHhhHh
Confidence 88887765 333 2566554 567788888887 7888888 7888888888888888 6788887642 2344
Q ss_pred cceeeecCCCCCCCCCC-CCCCCCCcEEeecCCch
Q 045261 158 LLDLCIFNCPNLTSLPK-VGLPSSLLELTIFDCPK 191 (227)
Q Consensus 158 L~~l~i~~c~~l~~~~~-~~~~~~L~~L~l~~c~~ 191 (227)
|-.|++++ +.++.+|+ ...+..|++|++++.|.
T Consensus 152 LLfLDLS~-NrLe~LPPQ~RRL~~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 152 LLFLDLSN-NRLEMLPPQIRRLSMLQTLKLSNNPL 185 (1255)
T ss_pred Hhhhcccc-chhhhcCHHHHHHhhhhhhhcCCChh
Confidence 55667776 45667665 34467788888888763
No 17
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=98.81 E-value=2.7e-10 Score=97.14 Aligned_cols=175 Identities=23% Similarity=0.314 Sum_probs=103.2
Q ss_pred CCCccEEEeccCCC-CCcCCcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCcc
Q 045261 4 PESISSVEIRRCEK-LGALPSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSL 81 (227)
Q Consensus 4 ~~~L~~L~l~~~~~-l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L 81 (227)
+++|+.|++++... +..+|.++..+.+|..++++. +++..+|.. -.+.+|+.|++ ++ +.++ .+. -..+...+|
T Consensus 196 mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNL-S~-N~it-eL~-~~~~~W~~l 270 (1255)
T KOG0444|consen 196 MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNL-SG-NKIT-ELN-MTEGEWENL 270 (1255)
T ss_pred chhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheecc-Cc-Ccee-eee-ccHHHHhhh
Confidence 45667777777432 235777777777888888764 456666665 66777777777 65 5554 221 134555677
Q ss_pred ceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCc--cccCCCCCCccCCCCccEEeecCCCCCccCCCC-CCCCcc
Q 045261 82 RWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKL--KNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV-GLPSSL 158 (227)
Q Consensus 82 ~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l--~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L 158 (227)
+.|+++.+ .++.+|.... .++.|+.|...+ +.+ ..+| ++++.+..|+.+..++ +.++-+|+. ..+..|
T Consensus 271 EtLNlSrN-QLt~LP~avc---KL~kL~kLy~n~-NkL~FeGiP---SGIGKL~~Levf~aan-N~LElVPEglcRC~kL 341 (1255)
T KOG0444|consen 271 ETLNLSRN-QLTVLPDAVC---KLTKLTKLYANN-NKLTFEGIP---SGIGKLIQLEVFHAAN-NKLELVPEGLCRCVKL 341 (1255)
T ss_pred hhhccccc-hhccchHHHh---hhHHHHHHHhcc-CcccccCCc---cchhhhhhhHHHHhhc-cccccCchhhhhhHHH
Confidence 77777765 6667776653 566666666554 333 2355 5666666666666555 455555553 233455
Q ss_pred ceeeecCCCCCCCCCC-CCCCCCCcEEeecCCchhh
Q 045261 159 LDLCIFNCPNLTSLPK-VGLPSSLLELTIFDCPKLR 193 (227)
Q Consensus 159 ~~l~i~~c~~l~~~~~-~~~~~~L~~L~l~~c~~l~ 193 (227)
+.|.+.. +.+-.+|. ..+++.|+.|++...|+|.
T Consensus 342 ~kL~L~~-NrLiTLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 342 QKLKLDH-NRLITLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred HHhcccc-cceeechhhhhhcCCcceeeccCCcCcc
Confidence 5555543 33444443 3455666666666665554
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.81 E-value=2.7e-10 Score=100.39 Aligned_cols=180 Identities=23% Similarity=0.310 Sum_probs=101.0
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCccc
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLR 82 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~ 82 (227)
..+|++++++. ..+..+|++++.+.+|+.+.+... .+..+|.. ...++|+.|.+ .. +.+. -+++ ....+.+|+
T Consensus 240 p~nl~~~dis~-n~l~~lp~wi~~~~nle~l~~n~N-~l~~lp~ri~~~~~L~~l~~-~~-nel~-yip~-~le~~~sL~ 313 (1081)
T KOG0618|consen 240 PLNLQYLDISH-NNLSNLPEWIGACANLEALNANHN-RLVALPLRISRITSLVSLSA-AY-NELE-YIPP-FLEGLKSLR 313 (1081)
T ss_pred cccceeeecch-hhhhcchHHHHhcccceEecccch-hHHhhHHHHhhhhhHHHHHh-hh-hhhh-hCCC-cccccceee
Confidence 34677777777 356677777777777777777653 23433333 33344444433 22 2221 1122 123344444
Q ss_pred eEEeccCCCCCccCccCcC-----------------------------------------------CCCCCccceEEEec
Q 045261 83 WLLIERCDESECFPDGMMG-----------------------------------------------MTLPTSLVHLNIVE 115 (227)
Q Consensus 83 ~L~l~~~~~l~~l~~~~~~-----------------------------------------------~~~~~~L~~L~l~~ 115 (227)
.|++..+ .+.++|+.+.. ..++..|+.|++++
T Consensus 314 tLdL~~N-~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy 392 (1081)
T KOG0618|consen 314 TLDLQSN-NLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY 392 (1081)
T ss_pred eeeehhc-cccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc
Confidence 4444433 33333221100 01456677777776
Q ss_pred CCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC-CCCCccceeeecCCCCCCCCCCCCCCCCCcEEeecCCchhhh
Q 045261 116 FQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV-GLPSSLLDLCIFNCPNLTSLPKVGLPSSLLELTIFDCPKLRK 194 (227)
Q Consensus 116 ~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~l~i~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~ 194 (227)
+.+..+| ...+.++..|++|++++ ++++.+|.. .....|++|...+ +.+..+|....+++|+.+|++ |.+|++
T Consensus 393 -NrL~~fp--as~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahs-N~l~~fPe~~~l~qL~~lDlS-~N~L~~ 466 (1081)
T KOG0618|consen 393 -NRLNSFP--ASKLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHS-NQLLSFPELAQLPQLKVLDLS-CNNLSE 466 (1081)
T ss_pred -cccccCC--HHHHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcC-CceeechhhhhcCcceEEecc-cchhhh
Confidence 6666676 56666777777777777 667777653 3344555555443 456677876778999999997 555554
Q ss_pred hh
Q 045261 195 EC 196 (227)
Q Consensus 195 ~~ 196 (227)
..
T Consensus 467 ~~ 468 (1081)
T KOG0618|consen 467 VT 468 (1081)
T ss_pred hh
Confidence 43
No 19
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.79 E-value=6.6e-11 Score=95.74 Aligned_cols=172 Identities=27% Similarity=0.308 Sum_probs=104.1
Q ss_pred CCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC-CC-----------------------CCCcceeEec
Q 045261 5 ESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE-GF-----------------------PTNLTSLAIG 60 (227)
Q Consensus 5 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~-----------------------l~~L~~L~l~ 60 (227)
.+|..++.+. +.+.++|++++.+..|..++..+. ++..+|+. .+ +..|++++.
T Consensus 114 ~~l~~l~~s~-n~~~el~~~i~~~~~l~dl~~~~N-~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~- 190 (565)
T KOG0472|consen 114 ISLVKLDCSS-NELKELPDSIGRLLDLEDLDATNN-QISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDC- 190 (565)
T ss_pred hhhhhhhccc-cceeecCchHHHHhhhhhhhcccc-ccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhccc-
Confidence 3455555555 234455555555555555555442 34444443 33 445555544
Q ss_pred cCcccccccchhcccccCCccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEee
Q 045261 61 EDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLI 140 (227)
Q Consensus 61 ~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l 140 (227)
|.++-+.+++ .++.+.+|..|+++.+ .+..+|... .+..|++|+++. +.+.-+| .+...+++++..|++
T Consensus 191 --~~N~L~tlP~-~lg~l~~L~~LyL~~N-ki~~lPef~----gcs~L~Elh~g~-N~i~~lp--ae~~~~L~~l~vLDL 259 (565)
T KOG0472|consen 191 --NSNLLETLPP-ELGGLESLELLYLRRN-KIRFLPEFP----GCSLLKELHVGE-NQIEMLP--AEHLKHLNSLLVLDL 259 (565)
T ss_pred --chhhhhcCCh-hhcchhhhHHHHhhhc-ccccCCCCC----ccHHHHHHHhcc-cHHHhhH--HHHhcccccceeeec
Confidence 3333334433 3555666666666654 555556322 455666666655 5666666 344558889999999
Q ss_pred cCCCCCccCCCC-CCCCccceeeecCCCCCCCCCCC-CCCCCCcEEeecCCchhh
Q 045261 141 QDCPNLTSLPKV-GLPSSLLDLCIFNCPNLTSLPKV-GLPSSLLELTIFDCPKLR 193 (227)
Q Consensus 141 ~~c~~l~~~~~~-~~~~~L~~l~i~~c~~l~~~~~~-~~~~~L~~L~l~~c~~l~ 193 (227)
.+ ++++++|.+ ....+|+.|++++. .+..+|.. +.+ .|+.|.+.|.|--+
T Consensus 260 Rd-Nklke~Pde~clLrsL~rLDlSNN-~is~Lp~sLgnl-hL~~L~leGNPlrT 311 (565)
T KOG0472|consen 260 RD-NKLKEVPDEICLLRSLERLDLSNN-DISSLPYSLGNL-HLKFLALEGNPLRT 311 (565)
T ss_pred cc-cccccCchHHHHhhhhhhhcccCC-ccccCCcccccc-eeeehhhcCCchHH
Confidence 99 789999987 44677999999974 46666653 555 89999999987443
No 20
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=98.74 E-value=7.3e-10 Score=89.81 Aligned_cols=126 Identities=24% Similarity=0.286 Sum_probs=105.8
Q ss_pred CCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccceE
Q 045261 5 ESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWL 84 (227)
Q Consensus 5 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L 84 (227)
+.|++|+... +.++.+|..++.+.+|..|++... .+..+|....+..|++|++ +-++++ -++.....++.++..|
T Consensus 183 ~~L~~ld~~~-N~L~tlP~~lg~l~~L~~LyL~~N-ki~~lPef~gcs~L~Elh~--g~N~i~-~lpae~~~~L~~l~vL 257 (565)
T KOG0472|consen 183 KRLKHLDCNS-NLLETLPPELGGLESLELLYLRRN-KIRFLPEFPGCSLLKELHV--GENQIE-MLPAEHLKHLNSLLVL 257 (565)
T ss_pred HHHHhcccch-hhhhcCChhhcchhhhHHHHhhhc-ccccCCCCCccHHHHHHHh--cccHHH-hhHHHHhcccccceee
Confidence 3566777666 467889999999999999999885 5888897788999999998 436665 5555566789999999
Q ss_pred EeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCC
Q 045261 85 LIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCP 144 (227)
Q Consensus 85 ~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~ 144 (227)
+++.+ .++++|++.. .+.+|++||+++ +.+..+| ..++++ +|+.|.+.+++
T Consensus 258 DLRdN-klke~Pde~c---lLrsL~rLDlSN-N~is~Lp---~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 258 DLRDN-KLKEVPDEIC---LLRSLERLDLSN-NDISSLP---YSLGNL-HLKFLALEGNP 308 (565)
T ss_pred ecccc-ccccCchHHH---HhhhhhhhcccC-CccccCC---cccccc-eeeehhhcCCc
Confidence 99997 9999999985 789999999998 8999999 899999 99999988754
No 21
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=1.7e-09 Score=88.33 Aligned_cols=177 Identities=18% Similarity=0.192 Sum_probs=115.0
Q ss_pred CCCCCccEEEeccCCCCCcC---CcccCCCCCcceEeecCCCCCcccCCC---CCCCCcceeEeccCcccccccchhccc
Q 045261 2 RLPESISSVEIRRCEKLGAL---PSDMHKLNSLQDLDIRECPSIVSFPEE---GFPTNLTSLAIGEDMKMLYKGLVQWGL 75 (227)
Q Consensus 2 ~~~~~L~~L~l~~~~~l~~l---p~~~~~l~~L~~L~l~~c~~l~~~~~~---~~l~~L~~L~l~~~~~~l~~~~~~~~~ 75 (227)
+.|++++.|+++++ .+.++ -+....||+|+.|+++... +.....+ ..+++|+.|.+ ..|.--... ..+.+
T Consensus 143 k~~~~v~~LdLS~N-L~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~~~~~l~~lK~L~l-~~CGls~k~-V~~~~ 218 (505)
T KOG3207|consen 143 KILPNVRDLDLSRN-LFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSNTTLLLSHLKQLVL-NSCGLSWKD-VQWIL 218 (505)
T ss_pred hhCCcceeecchhh-hHHhHHHHHHHHHhcccchhccccccc-ccCCccccchhhhhhhheEEe-ccCCCCHHH-HHHHH
Confidence 35788899999883 44443 2455789999999998854 4444433 67899999999 888765422 34456
Q ss_pred ccCCccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCC----
Q 045261 76 HRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPK---- 151 (227)
Q Consensus 76 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~---- 151 (227)
..+|+|+.|.+.++..+........ .+..|++|++++++.+..-- ....+.++.|+.|+++.| .+.++..
T Consensus 219 ~~fPsl~~L~L~~N~~~~~~~~~~~---i~~~L~~LdLs~N~li~~~~--~~~~~~l~~L~~Lnls~t-gi~si~~~d~~ 292 (505)
T KOG3207|consen 219 LTFPSLEVLYLEANEIILIKATSTK---ILQTLQELDLSNNNLIDFDQ--GYKVGTLPGLNQLNLSST-GIASIAEPDVE 292 (505)
T ss_pred HhCCcHHHhhhhcccccceecchhh---hhhHHhhccccCCccccccc--ccccccccchhhhhcccc-CcchhcCCCcc
Confidence 7789999999998754332222222 56789999999955444321 234668899999999884 4544422
Q ss_pred ----CCCCCccceeeecCCCC--CCCCCCCCCCCCCcEEeecC
Q 045261 152 ----VGLPSSLLDLCIFNCPN--LTSLPKVGLPSSLLELTIFD 188 (227)
Q Consensus 152 ----~~~~~~L~~l~i~~c~~--l~~~~~~~~~~~L~~L~l~~ 188 (227)
...+++|+.|.+..++- ..++.....+++|+.|.+..
T Consensus 293 s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~ 335 (505)
T KOG3207|consen 293 SLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITL 335 (505)
T ss_pred chhhhcccccceeeecccCccccccccchhhccchhhhhhccc
Confidence 13567889998887553 23333333455666665543
No 22
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.62 E-value=1.9e-07 Score=77.40 Aligned_cols=135 Identities=28% Similarity=0.409 Sum_probs=94.1
Q ss_pred CCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCccCcCCCCC
Q 045261 26 HKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLP 105 (227)
Q Consensus 26 ~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~ 105 (227)
..+.++++|++++| .+..+| ..+.+|++|.+ .+|..++ .+ +..+ .++|++|++.+|..+..+|
T Consensus 49 ~~~~~l~~L~Is~c-~L~sLP--~LP~sLtsL~L-snc~nLt-sL-P~~L--P~nLe~L~Ls~Cs~L~sLP--------- 111 (426)
T PRK15386 49 EEARASGRLYIKDC-DIESLP--VLPNELTEITI-ENCNNLT-TL-PGSI--PEGLEKLTVCHCPEISGLP--------- 111 (426)
T ss_pred HHhcCCCEEEeCCC-CCcccC--CCCCCCcEEEc-cCCCCcc-cC-Cchh--hhhhhheEccCcccccccc---------
Confidence 34788999999999 688888 46778999999 9999985 33 2223 3589999999987776554
Q ss_pred CccceEEEec--CCCccccCCCCCCccCCCCccEEeecCCCCCc--cCCCCCCCCccceeeecCCCCCCCCCCCCCCCCC
Q 045261 106 TSLVHLNIVE--FQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLT--SLPKVGLPSSLLDLCIFNCPNLTSLPKVGLPSSL 181 (227)
Q Consensus 106 ~~L~~L~l~~--~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~--~~~~~~~~~~L~~l~i~~c~~l~~~~~~~~~~~L 181 (227)
++|+.|++.. +..+..+| ++|+.|.+.+++... .++ ...+++|++|++.+|..+. +| ..++.+|
T Consensus 112 ~sLe~L~L~~n~~~~L~~LP---------ssLk~L~I~~~n~~~~~~lp-~~LPsSLk~L~Is~c~~i~-LP-~~LP~SL 179 (426)
T PRK15386 112 ESVRSLEIKGSATDSIKNVP---------NGLTSLSINSYNPENQARID-NLISPSLKTLSLTGCSNII-LP-EKLPESL 179 (426)
T ss_pred cccceEEeCCCCCcccccCc---------chHhheeccccccccccccc-cccCCcccEEEecCCCccc-Cc-ccccccC
Confidence 4577777754 22344444 367788875533221 122 1356799999999998664 23 2366899
Q ss_pred cEEeecCC
Q 045261 182 LELTIFDC 189 (227)
Q Consensus 182 ~~L~l~~c 189 (227)
+.|.+..+
T Consensus 180 k~L~ls~n 187 (426)
T PRK15386 180 QSITLHIE 187 (426)
T ss_pred cEEEeccc
Confidence 99999865
No 23
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.57 E-value=8.3e-10 Score=89.70 Aligned_cols=192 Identities=15% Similarity=0.177 Sum_probs=101.5
Q ss_pred ccEEEeccCCCCCcCC--cccCCCCCcceEeecCCCCCcccCCC---CCCCCcceeEeccCcccccccchhcccccCCcc
Q 045261 7 ISSVEIRRCEKLGALP--SDMHKLNSLQDLDIRECPSIVSFPEE---GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSL 81 (227)
Q Consensus 7 L~~L~l~~~~~l~~lp--~~~~~l~~L~~L~l~~c~~l~~~~~~---~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L 81 (227)
|+.|.+.||...+.-+ ....+++++++|.+.+|..+++-.-. .++++|+.+++ ..|..+++.........+++|
T Consensus 140 lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L-~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 140 LKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNL-HSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred cccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhh-cccchhHHHHHHHHHHhhhhH
Confidence 5667777776554322 34467777777777777765543222 56777777777 777777755555445567777
Q ss_pred ceEEeccCCCCCccC--ccCcCCCCCCccceEEEecCCCccc--cCCCCCCccCCCCccEEeecCCCCCccCCCC---CC
Q 045261 82 RWLLIERCDESECFP--DGMMGMTLPTSLVHLNIVEFQKLKN--LSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV---GL 154 (227)
Q Consensus 82 ~~L~l~~~~~l~~l~--~~~~~~~~~~~L~~L~l~~~~~l~~--l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~---~~ 154 (227)
++++++.|+.+..-. .-.. .+..++.+...+|..+.. +- ..-.+..-+.++++..|..+++.... ..
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~r---G~~~l~~~~~kGC~e~~le~l~---~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~ 292 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQR---GCKELEKLSLKGCLELELEALL---KAAAYCLEILKLNLQHCNQLTDEDLWLIACG 292 (483)
T ss_pred HHhhhccCchhhcCcchHHhc---cchhhhhhhhcccccccHHHHH---HHhccChHhhccchhhhccccchHHHHHhhh
Confidence 777777776655410 0000 122344444444443321 10 11113334455555555555444321 12
Q ss_pred CCccceeeecCCCCCCCCCC---CCCCCCCcEEeecCCchhhhhhcccCCCCcc
Q 045261 155 PSSLLDLCIFNCPNLTSLPK---VGLPSSLLELTIFDCPKLRKECKRDKGKGWS 205 (227)
Q Consensus 155 ~~~L~~l~i~~c~~l~~~~~---~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~ 205 (227)
...|+.++.++|..+++... ...+.+|+.|.+++|..+..+....-+..++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~ 346 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCP 346 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCCh
Confidence 33556666666666554432 1235666666666666665554443333333
No 24
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.51 E-value=4.2e-08 Score=79.67 Aligned_cols=175 Identities=20% Similarity=0.139 Sum_probs=81.5
Q ss_pred CCCccEEEeccCCCC------CcCCcccCCCCCcceEeecCCCCCcccCCC-CCC---CCcceeEeccCcccccccch--
Q 045261 4 PESISSVEIRRCEKL------GALPSDMHKLNSLQDLDIRECPSIVSFPEE-GFP---TNLTSLAIGEDMKMLYKGLV-- 71 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l------~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l---~~L~~L~l~~~~~~l~~~~~-- 71 (227)
.++++.++++++..- ..++..+..+++|+.|++++|......+.. ..+ ++|+.|++ ++|. +.+...
T Consensus 50 ~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l-s~~~-~~~~~~~~ 127 (319)
T cd00116 50 QPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKL-NNNG-LGDRGLRL 127 (319)
T ss_pred CCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEe-eCCc-cchHHHHH
Confidence 345677777664322 112234455667777777766533211111 111 44777777 5543 221111
Q ss_pred -hcccccC-CccceEEeccCCCCC-----ccCccCcCCCCCCccceEEEecCCCcc-----ccCCCCCCccCCCCccEEe
Q 045261 72 -QWGLHRL-TSLRWLLIERCDESE-----CFPDGMMGMTLPTSLVHLNIVEFQKLK-----NLSSSSSGFHSLTSLRRLL 139 (227)
Q Consensus 72 -~~~~~~l-~~L~~L~l~~~~~l~-----~l~~~~~~~~~~~~L~~L~l~~~~~l~-----~l~~~~~~l~~l~~L~~L~ 139 (227)
...+..+ ++|+.|++++|. +. .+...+. .+++|++|++++|. +. .++ ..+..+++|++|+
T Consensus 128 l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~---~~~~L~~L~l~~n~-l~~~~~~~l~---~~l~~~~~L~~L~ 199 (319)
T cd00116 128 LAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALR---ANRDLKELNLANNG-IGDAGIRALA---EGLKANCNLEVLD 199 (319)
T ss_pred HHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHH---hCCCcCEEECcCCC-CchHHHHHHH---HHHHhCCCCCEEe
Confidence 1123344 667777777662 32 1222221 34567777776643 32 122 2233445677777
Q ss_pred ecCCCCCccCC-----C-CCCCCccceeeecCCCCCCCCC-----CC--CCCCCCcEEeecCCc
Q 045261 140 IQDCPNLTSLP-----K-VGLPSSLLDLCIFNCPNLTSLP-----KV--GLPSSLLELTIFDCP 190 (227)
Q Consensus 140 l~~c~~l~~~~-----~-~~~~~~L~~l~i~~c~~l~~~~-----~~--~~~~~L~~L~l~~c~ 190 (227)
+++|. +.... . ....++|++|++++|+. ++.. .. ...++|++|++.+|.
T Consensus 200 L~~n~-i~~~~~~~l~~~~~~~~~L~~L~ls~n~l-~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 200 LNNNG-LTDEGASALAETLASLKSLEVLNLGDNNL-TDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred ccCCc-cChHHHHHHHHHhcccCCCCEEecCCCcC-chHHHHHHHHHHhccCCCceEEEccCCC
Confidence 76653 32111 1 01345666677666542 2110 00 012566777776663
No 25
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.51 E-value=1.9e-09 Score=87.68 Aligned_cols=64 Identities=17% Similarity=0.197 Sum_probs=34.8
Q ss_pred CCCCccEEEeccCCCCCcCC--cccCCCCCcceEeecCCCCCcccCCC---CCCCCcceeEeccCccccc
Q 045261 3 LPESISSVEIRRCEKLGALP--SDMHKLNSLQDLDIRECPSIVSFPEE---GFPTNLTSLAIGEDMKMLY 67 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp--~~~~~l~~L~~L~l~~c~~l~~~~~~---~~l~~L~~L~l~~~~~~l~ 67 (227)
.+||+++|.+.+|.+++.-. +.-.++++|+++++..|..+++.... ..+++|+.+++ ++|..+.
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNl-Swc~qi~ 230 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNL-SWCPQIS 230 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhh-ccCchhh
Confidence 35666666666666555321 11235566666666666555443211 45566666666 6665555
No 26
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.49 E-value=4.8e-08 Score=88.86 Aligned_cols=178 Identities=23% Similarity=0.264 Sum_probs=101.9
Q ss_pred CCCccEEEeccCCC-CCcCC-cccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCc
Q 045261 4 PESISSVEIRRCEK-LGALP-SDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTS 80 (227)
Q Consensus 4 ~~~L~~L~l~~~~~-l~~lp-~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~ 80 (227)
+++|+.|-+.++.. +..++ +.+..++.|+.|++++|..+..+|.. +.+-+|+.|++ +++. +. . .|.+++++..
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L-~~t~-I~-~-LP~~l~~Lk~ 619 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDL-SDTG-IS-H-LPSGLGNLKK 619 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccc-cCCC-cc-c-cchHHHHHHh
Confidence 34566666666542 44444 33677888888888888888888888 78888888888 6643 32 3 4557888888
Q ss_pred cceEEeccCCCCCccCccCcCCCCCCccceEEEecCC-CccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCC---
Q 045261 81 LRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQ-KLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPS--- 156 (227)
Q Consensus 81 L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~-~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~--- 156 (227)
|.+|++.....+..++.... .+++|++|.+..-. .....- ...+.++.+|+.+.+..... ..+.......
T Consensus 620 L~~Lnl~~~~~l~~~~~i~~---~L~~Lr~L~l~~s~~~~~~~~--l~el~~Le~L~~ls~~~~s~-~~~e~l~~~~~L~ 693 (889)
T KOG4658|consen 620 LIYLNLEVTGRLESIPGILL---ELQSLRVLRLPRSALSNDKLL--LKELENLEHLENLSITISSV-LLLEDLLGMTRLR 693 (889)
T ss_pred hheeccccccccccccchhh---hcccccEEEeeccccccchhh--HHhhhcccchhhheeecchh-HhHhhhhhhHHHH
Confidence 88888887766666644332 47888888887632 111111 13344555555555544322 0000001111
Q ss_pred -ccceeeecCCCCCCCCCCCCCCCCCcEEeecCCch
Q 045261 157 -SLLDLCIFNCPNLTSLPKVGLPSSLLELTIFDCPK 191 (227)
Q Consensus 157 -~L~~l~i~~c~~l~~~~~~~~~~~L~~L~l~~c~~ 191 (227)
..+.+.+.+|...........+.+|+.|.+.+|..
T Consensus 694 ~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~ 729 (889)
T KOG4658|consen 694 SLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGI 729 (889)
T ss_pred HHhHhhhhcccccceeecccccccCcceEEEEcCCC
Confidence 11222222233333333334456677777776654
No 27
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.47 E-value=3.4e-09 Score=89.34 Aligned_cols=164 Identities=26% Similarity=0.370 Sum_probs=118.3
Q ss_pred EEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCccceEEecc
Q 045261 10 VEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIER 88 (227)
Q Consensus 10 L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 88 (227)
.+++.+ ...++|..+..|..|+.+.++.. .+..+|.. ..+..|.++++ +. ++++ . .+..+..++ |+.|.+++
T Consensus 80 aDlsrN-R~~elp~~~~~f~~Le~liLy~n-~~r~ip~~i~~L~~lt~l~l-s~-NqlS-~-lp~~lC~lp-Lkvli~sN 152 (722)
T KOG0532|consen 80 ADLSRN-RFSELPEEACAFVSLESLILYHN-CIRTIPEAICNLEALTFLDL-SS-NQLS-H-LPDGLCDLP-LKVLIVSN 152 (722)
T ss_pred hhcccc-ccccCchHHHHHHHHHHHHHHhc-cceecchhhhhhhHHHHhhh-cc-chhh-c-CChhhhcCc-ceeEEEec
Confidence 455553 45567777777888888877663 47777777 78888888888 44 6664 3 344577776 88888887
Q ss_pred CCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccceeeecCCCC
Q 045261 89 CDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCIFNCPN 168 (227)
Q Consensus 89 ~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~i~~c~~ 168 (227)
+ .++.+|.+.+ ..+.|..||.+. +.+..+| ..++++.+|+.|.+.. +++..+|++...-.|..||++ |++
T Consensus 153 N-kl~~lp~~ig---~~~tl~~ld~s~-nei~slp---sql~~l~slr~l~vrR-n~l~~lp~El~~LpLi~lDfS-cNk 222 (722)
T KOG0532|consen 153 N-KLTSLPEEIG---LLPTLAHLDVSK-NEIQSLP---SQLGYLTSLRDLNVRR-NHLEDLPEELCSLPLIRLDFS-CNK 222 (722)
T ss_pred C-ccccCCcccc---cchhHHHhhhhh-hhhhhch---HHhhhHHHHHHHHHhh-hhhhhCCHHHhCCceeeeecc-cCc
Confidence 5 8888998887 678888888876 6788888 7788888888888877 667777775433345566665 677
Q ss_pred CCCCCCC-CCCCCCcEEeecCCc
Q 045261 169 LTSLPKV-GLPSSLLELTIFDCP 190 (227)
Q Consensus 169 l~~~~~~-~~~~~L~~L~l~~c~ 190 (227)
+..+|.. ..++.|++|.+.+.|
T Consensus 223 is~iPv~fr~m~~Lq~l~LenNP 245 (722)
T KOG0532|consen 223 ISYLPVDFRKMRHLQVLQLENNP 245 (722)
T ss_pred eeecchhhhhhhhheeeeeccCC
Confidence 7777763 446778888887765
No 28
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.45 E-value=3.2e-08 Score=80.38 Aligned_cols=34 Identities=18% Similarity=0.150 Sum_probs=14.8
Q ss_pred CccEEEeccCCCC----CcCCcccCCCCCcceEeecCC
Q 045261 6 SISSVEIRRCEKL----GALPSDMHKLNSLQDLDIREC 39 (227)
Q Consensus 6 ~L~~L~l~~~~~l----~~lp~~~~~l~~L~~L~l~~c 39 (227)
+|+.|++++|..- ..++..+...++|++++++++
T Consensus 24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~ 61 (319)
T cd00116 24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLN 61 (319)
T ss_pred hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccc
Confidence 3555555554321 113333444445555555443
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.41 E-value=1.2e-07 Score=70.17 Aligned_cols=106 Identities=21% Similarity=0.277 Sum_probs=25.3
Q ss_pred CCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCccCcCCCCC
Q 045261 27 KLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLP 105 (227)
Q Consensus 27 ~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~ 105 (227)
+..+++.|++.++ .+..+... ..+.+|+.|++ ++ +.++ .+ .++..+++|+.|+++++ .++++...+. ..+
T Consensus 17 n~~~~~~L~L~~n-~I~~Ie~L~~~l~~L~~L~L-s~-N~I~-~l--~~l~~L~~L~~L~L~~N-~I~~i~~~l~--~~l 87 (175)
T PF14580_consen 17 NPVKLRELNLRGN-QISTIENLGATLDKLEVLDL-SN-NQIT-KL--EGLPGLPRLKTLDLSNN-RISSISEGLD--KNL 87 (175)
T ss_dssp --------------------S--TT-TT--EEE--TT-S--S-----TT----TT--EEE--SS----S-CHHHH--HH-
T ss_pred ccccccccccccc-ccccccchhhhhcCCCEEEC-CC-CCCc-cc--cCccChhhhhhcccCCC-CCCccccchH--HhC
Confidence 3445666666664 34444433 24556666666 44 3333 21 23555566666666654 5555543221 024
Q ss_pred CccceEEEecCCCccccCCCCCCccCCCCccEEeecCC
Q 045261 106 TSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDC 143 (227)
Q Consensus 106 ~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c 143 (227)
|+|++|.+++ +.+.++.. ...++.+++|+.|++.++
T Consensus 88 p~L~~L~L~~-N~I~~l~~-l~~L~~l~~L~~L~L~~N 123 (175)
T PF14580_consen 88 PNLQELYLSN-NKISDLNE-LEPLSSLPKLRVLSLEGN 123 (175)
T ss_dssp TT--EEE-TT-S---SCCC-CGGGGG-TT--EEE-TT-
T ss_pred CcCCEEECcC-CcCCChHH-hHHHHcCCCcceeeccCC
Confidence 5666666655 44444420 123445556666666553
No 30
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.40 E-value=1.2e-08 Score=82.56 Aligned_cols=79 Identities=19% Similarity=0.296 Sum_probs=38.7
Q ss_pred CccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCCccceeeecCCCCCCCCCCCCC--CCCC
Q 045261 106 TSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPSSLLDLCIFNCPNLTSLPKVGL--PSSL 181 (227)
Q Consensus 106 ~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~l~i~~c~~l~~~~~~~~--~~~L 181 (227)
++|+.|++++ +.++.+. ..+|....++++|.+.. +++..+... .-..+|+.|+++++ .++.+.+..+ ..+|
T Consensus 274 ~~L~~lnlsn-N~i~~i~--~~aFe~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~N-~it~~~~~aF~~~~~l 348 (498)
T KOG4237|consen 274 PNLRKLNLSN-NKITRIE--DGAFEGAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYDN-QITTVAPGAFQTLFSL 348 (498)
T ss_pred ccceEeccCC-Cccchhh--hhhhcchhhhhhhhcCc-chHHHHHHHhhhccccceeeeecCC-eeEEEeccccccccee
Confidence 3444444444 3444443 34444444444444444 344444332 12356777777763 3454444333 4567
Q ss_pred cEEeecCC
Q 045261 182 LELTIFDC 189 (227)
Q Consensus 182 ~~L~l~~c 189 (227)
.+|.+.+.
T Consensus 349 ~~l~l~~N 356 (498)
T KOG4237|consen 349 STLNLLSN 356 (498)
T ss_pred eeeehccC
Confidence 77777653
No 31
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=1.7e-09 Score=84.57 Aligned_cols=182 Identities=15% Similarity=0.148 Sum_probs=106.8
Q ss_pred CccEEEeccCCCCCc--CCcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCccc
Q 045261 6 SISSVEIRRCEKLGA--LPSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLR 82 (227)
Q Consensus 6 ~L~~L~l~~~~~l~~--lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~ 82 (227)
.||+|++++ ..++. +-..+..+.+|+.|.+.+...-..+... ..-.+|+.+++ +.|+.++.......+.+++.|.
T Consensus 186 Rlq~lDLS~-s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnl-sm~sG~t~n~~~ll~~scs~L~ 263 (419)
T KOG2120|consen 186 RLQHLDLSN-SVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNL-SMCSGFTENALQLLLSSCSRLD 263 (419)
T ss_pred hhHHhhcch-hheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecc-ccccccchhHHHHHHHhhhhHh
Confidence 477777777 33331 1123356677777777765432333222 44577888888 8888777555455567788888
Q ss_pred eEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccC--CCCCCCCccce
Q 045261 83 WLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSL--PKVGLPSSLLD 160 (227)
Q Consensus 83 ~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~--~~~~~~~~L~~ 160 (227)
.|+++.|...++.-.... .-.-++|..|.+++|..--...+.+.-..++|+|.+|++++|..++.- .+...++-|++
T Consensus 264 ~LNlsWc~l~~~~Vtv~V-~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~ 342 (419)
T KOG2120|consen 264 ELNLSWCFLFTEKVTVAV-AHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQH 342 (419)
T ss_pred hcCchHhhccchhhhHHH-hhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhee
Confidence 888887754443211110 012356777777776432221111133447788888888888777651 11123567888
Q ss_pred eeecCCCCCCCC--CCCCCCCCCcEEeecCCc
Q 045261 161 LCIFNCPNLTSL--PKVGLPSSLLELTIFDCP 190 (227)
Q Consensus 161 l~i~~c~~l~~~--~~~~~~~~L~~L~l~~c~ 190 (227)
+.++.|-.+..- -...-.|+|.+|++.||-
T Consensus 343 lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 343 LSLSRCYDIIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred eehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence 888888755321 112336889999999874
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.34 E-value=6.5e-07 Score=75.14 Aligned_cols=169 Identities=24% Similarity=0.343 Sum_probs=105.8
Q ss_pred CCccEEEeccCCCCCcCCcccCCCC-CcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCccc
Q 045261 5 ESISSVEIRRCEKLGALPSDMHKLN-SLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLR 82 (227)
Q Consensus 5 ~~L~~L~l~~~~~l~~lp~~~~~l~-~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~ 82 (227)
+.++.|.+.+ ..+++++.....++ +|+.|++++. .+..++.. ..+++|+.|++ +. +++. .+ +...+..++|+
T Consensus 116 ~~l~~L~l~~-n~i~~i~~~~~~~~~nL~~L~l~~N-~i~~l~~~~~~l~~L~~L~l-~~-N~l~-~l-~~~~~~~~~L~ 189 (394)
T COG4886 116 TNLTSLDLDN-NNITDIPPLIGLLKSNLKELDLSDN-KIESLPSPLRNLPNLKNLDL-SF-NDLS-DL-PKLLSNLSNLN 189 (394)
T ss_pred cceeEEecCC-cccccCccccccchhhccccccccc-chhhhhhhhhcccccccccc-CC-chhh-hh-hhhhhhhhhhh
Confidence 4566777777 45677777667774 7888888774 46666433 77888888888 65 3443 22 22233677788
Q ss_pred eEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCC-CCCCCcccee
Q 045261 83 WLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPK-VGLPSSLLDL 161 (227)
Q Consensus 83 ~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~-~~~~~~L~~l 161 (227)
.|+++++ .+..+|.... .+..|+++.+.+ +.+..++ ..+..+.++..+.+.+ +.+..++. .+..++++.|
T Consensus 190 ~L~ls~N-~i~~l~~~~~---~~~~L~~l~~~~-N~~~~~~---~~~~~~~~l~~l~l~~-n~~~~~~~~~~~l~~l~~L 260 (394)
T COG4886 190 NLDLSGN-KISDLPPEIE---LLSALEELDLSN-NSIIELL---SSLSNLKNLSGLELSN-NKLEDLPESIGNLSNLETL 260 (394)
T ss_pred heeccCC-ccccCchhhh---hhhhhhhhhhcC-Ccceecc---hhhhhcccccccccCC-ceeeeccchhcccccccee
Confidence 8888876 7777777542 344578887776 3344444 5566666777666555 44444222 2445567777
Q ss_pred eecCCCCCCCCCCCCCCCCCcEEeecCC
Q 045261 162 CIFNCPNLTSLPKVGLPSSLLELTIFDC 189 (227)
Q Consensus 162 ~i~~c~~l~~~~~~~~~~~L~~L~l~~c 189 (227)
+++++ .+.+++..+-..+++.|++.+.
T Consensus 261 ~~s~n-~i~~i~~~~~~~~l~~L~~s~n 287 (394)
T COG4886 261 DLSNN-QISSISSLGSLTNLRELDLSGN 287 (394)
T ss_pred ccccc-cccccccccccCccCEEeccCc
Confidence 77753 4555555445677788887763
No 33
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.31 E-value=1.3e-06 Score=53.13 Aligned_cols=59 Identities=19% Similarity=0.283 Sum_probs=37.4
Q ss_pred CccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCC
Q 045261 79 TSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDC 143 (227)
Q Consensus 79 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c 143 (227)
++|++|++++| .+..+|.+.. ..+++|++|++++ +.+..++ ...+.++++|++|+++++
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f--~~l~~L~~L~l~~-N~l~~i~--~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSF--SNLPNLETLDLSN-NNLTSIP--PDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTT--TTGTTESEEEETS-SSESEEE--TTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHH--cCCCCCCEeEccC-CccCccC--HHHHcCCCCCCEEeCcCC
Confidence 35667777766 6666665443 2566777777765 5666665 456667777777777664
No 34
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.30 E-value=9.5e-08 Score=80.84 Aligned_cols=147 Identities=26% Similarity=0.377 Sum_probs=113.3
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCccc
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLR 82 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~ 82 (227)
+..|.+|+++.+ .+..+|..+..|+ |+.|-+++. +++.+|.. +...+|..|+. +. +.+. .++ ..++.+.+|+
T Consensus 120 L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl~~ld~-s~-nei~-slp-sql~~l~slr 192 (722)
T KOG0532|consen 120 LEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTLAHLDV-SK-NEIQ-SLP-SQLGYLTSLR 192 (722)
T ss_pred hhHHHHhhhccc-hhhcCChhhhcCc-ceeEEEecC-ccccCCcccccchhHHHhhh-hh-hhhh-hch-HHhhhHHHHH
Confidence 446778888884 4667888888888 888888874 58888877 88889999998 55 4454 343 3588899999
Q ss_pred eEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC----CCCCcc
Q 045261 83 WLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV----GLPSSL 158 (227)
Q Consensus 83 ~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~----~~~~~L 158 (227)
.|.++.+ .+.++|.+.. .+ .|.+||++ |+++..+| ..+.++..|++|.+.+ +-+++-|.. +.....
T Consensus 193 ~l~vrRn-~l~~lp~El~---~L-pLi~lDfS-cNkis~iP---v~fr~m~~Lq~l~Len-NPLqSPPAqIC~kGkVHIF 262 (722)
T KOG0532|consen 193 DLNVRRN-HLEDLPEELC---SL-PLIRLDFS-CNKISYLP---VDFRKMRHLQVLQLEN-NPLQSPPAQICEKGKVHIF 262 (722)
T ss_pred HHHHhhh-hhhhCCHHHh---CC-ceeeeecc-cCceeecc---hhhhhhhhheeeeecc-CCCCCChHHHHhccceeee
Confidence 9999986 8888999884 34 58999997 69999999 8999999999999999 456665553 233345
Q ss_pred ceeeecCCC
Q 045261 159 LDLCIFNCP 167 (227)
Q Consensus 159 ~~l~i~~c~ 167 (227)
++|++..|.
T Consensus 263 KyL~~qA~q 271 (722)
T KOG0532|consen 263 KYLSTQACQ 271 (722)
T ss_pred eeecchhcc
Confidence 777777773
No 35
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=2e-08 Score=78.80 Aligned_cols=158 Identities=16% Similarity=0.225 Sum_probs=101.4
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC---CCCCCcceeEeccCcccccccchhccccc-CC
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE---GFPTNLTSLAIGEDMKMLYKGLVQWGLHR-LT 79 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~---~~l~~L~~L~l~~~~~~l~~~~~~~~~~~-l~ 79 (227)
|.+|+.|.+.|...-..+-..+..-.+|+.++++.|..+...... .+++.|..|++ ++|...++.+.. .+.+ -+
T Consensus 209 C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNl-sWc~l~~~~Vtv-~V~hise 286 (419)
T KOG2120|consen 209 CSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNL-SWCFLFTEKVTV-AVAHISE 286 (419)
T ss_pred HHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCc-hHhhccchhhhH-HHhhhch
Confidence 456777777775332333344566778999999998877765544 67888889999 888777633222 1222 25
Q ss_pred ccceEEeccCCCC---CccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCcc--CCCCCC
Q 045261 80 SLRWLLIERCDES---ECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTS--LPKVGL 154 (227)
Q Consensus 80 ~L~~L~l~~~~~l---~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~--~~~~~~ 154 (227)
+|+.|+++++..- .++..-.. .+|+|..||+++|..++.-- ...+-.++-|++|.++.|..+.. +-+-..
T Consensus 287 ~l~~LNlsG~rrnl~~sh~~tL~~---rcp~l~~LDLSD~v~l~~~~--~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s 361 (419)
T KOG2120|consen 287 TLTQLNLSGYRRNLQKSHLSTLVR---RCPNLVHLDLSDSVMLKNDC--FQEFFKFNYLQHLSLSRCYDIIPETLLELNS 361 (419)
T ss_pred hhhhhhhhhhHhhhhhhHHHHHHH---hCCceeeeccccccccCchH--HHHHHhcchheeeehhhhcCCChHHeeeecc
Confidence 6888888875221 11111111 57889999999988776521 24556788899999988876522 122245
Q ss_pred CCccceeeecCCCC
Q 045261 155 PSSLLDLCIFNCPN 168 (227)
Q Consensus 155 ~~~L~~l~i~~c~~ 168 (227)
.++|.+|++.+|-.
T Consensus 362 ~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 362 KPSLVYLDVFGCVS 375 (419)
T ss_pred CcceEEEEeccccC
Confidence 67888888887643
No 36
>PLN03150 hypothetical protein; Provisional
Probab=98.23 E-value=3.2e-06 Score=74.97 Aligned_cols=111 Identities=16% Similarity=0.150 Sum_probs=69.1
Q ss_pred cceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCccCcCCCCCCccc
Q 045261 31 LQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLV 109 (227)
Q Consensus 31 L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~ 109 (227)
++.|+++++.....+|.. ..+++|+.|++ ++ +.+.+.+ +..++.+++|+.|+++++.....+|..++ .+++|+
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~L-s~-N~l~g~i-P~~~~~l~~L~~LdLs~N~lsg~iP~~l~---~L~~L~ 493 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINL-SG-NSIRGNI-PPSLGSITSLEVLDLSYNSFNGSIPESLG---QLTSLR 493 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEEC-CC-CcccCcC-ChHHhCCCCCCEEECCCCCCCCCCchHHh---cCCCCC
Confidence 566777766543455554 66777777777 55 4454343 33467777778888777755556676665 677788
Q ss_pred eEEEecCCCccccCCCCCCccCC-CCccEEeecCCCCCccCC
Q 045261 110 HLNIVEFQKLKNLSSSSSGFHSL-TSLRRLLIQDCPNLTSLP 150 (227)
Q Consensus 110 ~L~l~~~~~l~~l~~~~~~l~~l-~~L~~L~l~~c~~l~~~~ 150 (227)
.|+++++.....+| ..+... .++..+++.++..+...|
T Consensus 494 ~L~Ls~N~l~g~iP---~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 494 ILNLNGNSLSGRVP---AALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred EEECcCCcccccCC---hHHhhccccCceEEecCCccccCCC
Confidence 88877755555666 555442 355667777665554443
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.19 E-value=1e-06 Score=65.14 Aligned_cols=132 Identities=17% Similarity=0.196 Sum_probs=43.2
Q ss_pred CcccCCCCCCCCcceeEeccCcccccccchhcccc-cCCccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCcc
Q 045261 42 IVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLH-RLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLK 120 (227)
Q Consensus 42 l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~-~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~ 120 (227)
++..+....+.++++|++ .+ +.++ .+ ..++ .+.+|+.|++++| .++.++.-. .++.|+.|++++ +.+.
T Consensus 9 i~~~~~~~n~~~~~~L~L-~~-n~I~-~I--e~L~~~l~~L~~L~Ls~N-~I~~l~~l~----~L~~L~~L~L~~-N~I~ 77 (175)
T PF14580_consen 9 IEQIAQYNNPVKLRELNL-RG-NQIS-TI--ENLGATLDKLEVLDLSNN-QITKLEGLP----GLPRLKTLDLSN-NRIS 77 (175)
T ss_dssp --------------------------------S--TT-TT--EEE-TTS---S--TT--------TT--EEE--S-S---
T ss_pred cccccccccccccccccc-cc-cccc-cc--cchhhhhcCCCEEECCCC-CCccccCcc----ChhhhhhcccCC-CCCC
Confidence 444555456667888888 55 4443 21 2344 4678888888887 777776432 578888888887 7777
Q ss_pred ccCCCCCCc-cCCCCccEEeecCCCCCccCCCC---CCCCccceeeecCCCCCCCCCC-----CCCCCCCcEEeecCC
Q 045261 121 NLSSSSSGF-HSLTSLRRLLIQDCPNLTSLPKV---GLPSSLLDLCIFNCPNLTSLPK-----VGLPSSLLELTIFDC 189 (227)
Q Consensus 121 ~l~~~~~~l-~~l~~L~~L~l~~c~~l~~~~~~---~~~~~L~~l~i~~c~~l~~~~~-----~~~~~~L~~L~l~~c 189 (227)
++. ..+ ..+++|++|++++ +++.++..- ..+++|+.|++.++|.-+. +. ...+|+|+.||-...
T Consensus 78 ~i~---~~l~~~lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 78 SIS---EGLDKNLPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp S-C---HHHHHH-TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTEET
T ss_pred ccc---cchHHhCCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCEEc
Confidence 775 444 3688888888887 667666542 3456777777777664322 21 122667777766544
No 38
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.10 E-value=4.4e-07 Score=74.54 Aligned_cols=175 Identities=16% Similarity=0.126 Sum_probs=104.7
Q ss_pred CCCccEEEeccCCCCCcCC--cccCCCCCcceEeecCCCCCccc-CCC---CCCCCcceeEeccCcccccccchhccccc
Q 045261 4 PESISSVEIRRCEKLGALP--SDMHKLNSLQDLDIRECPSIVSF-PEE---GFPTNLTSLAIGEDMKMLYKGLVQWGLHR 77 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp--~~~~~l~~L~~L~l~~c~~l~~~-~~~---~~l~~L~~L~l~~~~~~l~~~~~~~~~~~ 77 (227)
+.+|+++.+.+|. +...+ .-...|++++.|+++..- +..+ +.. ..+++|+.|++ +. +.+...........
T Consensus 120 ~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL-~~nw~~v~~i~eqLp~Le~LNl-s~-Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 120 LKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNL-FHNWFPVLKIAEQLPSLENLNL-SS-NRLSNFISSNTTLL 195 (505)
T ss_pred HHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhh-HHhHHHHHHHHHhcccchhccc-cc-ccccCCccccchhh
Confidence 4567777777753 33333 244678888888888742 2222 211 56788888888 44 55542322223345
Q ss_pred CCccceEEeccCCCCCc--cCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccC--CCCC
Q 045261 78 LTSLRWLLIERCDESEC--FPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSL--PKVG 153 (227)
Q Consensus 78 l~~L~~L~l~~~~~l~~--l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~--~~~~ 153 (227)
+++|+.|.++.| ++.. +..-. ..+|+|+.|++..+..+..-. ....-+..|++|++++++.+..- +.-+
T Consensus 196 l~~lK~L~l~~C-Gls~k~V~~~~---~~fPsl~~L~L~~N~~~~~~~---~~~~i~~~L~~LdLs~N~li~~~~~~~~~ 268 (505)
T KOG3207|consen 196 LSHLKQLVLNSC-GLSWKDVQWIL---LTFPSLEVLYLEANEIILIKA---TSTKILQTLQELDLSNNNLIDFDQGYKVG 268 (505)
T ss_pred hhhhheEEeccC-CCCHHHHHHHH---HhCCcHHHhhhhcccccceec---chhhhhhHHhhccccCCcccccccccccc
Confidence 778888888888 4431 11111 257888888888854322211 34456678899999885544332 3346
Q ss_pred CCCccceeeecCCCCCCCC--CC------CCCCCCCcEEeecCCc
Q 045261 154 LPSSLLDLCIFNCPNLTSL--PK------VGLPSSLLELTIFDCP 190 (227)
Q Consensus 154 ~~~~L~~l~i~~c~~l~~~--~~------~~~~~~L~~L~l~~c~ 190 (227)
.++.|..|.++.|. +.++ |. ...+++|++|++...+
T Consensus 269 ~l~~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~ 312 (505)
T KOG3207|consen 269 TLPGLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENN 312 (505)
T ss_pred cccchhhhhccccC-cchhcCCCccchhhhcccccceeeecccCc
Confidence 67788887777654 2322 11 1347889999888643
No 39
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.06 E-value=2.9e-06 Score=71.19 Aligned_cols=149 Identities=19% Similarity=0.300 Sum_probs=103.4
Q ss_pred CccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCccceE
Q 045261 6 SISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWL 84 (227)
Q Consensus 6 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L 84 (227)
+|+.|++++ ..+..+|..+..+++|+.|+++.++ +.+++.. ...++|+.|++ ++ +++. .++. .......|+++
T Consensus 141 nL~~L~l~~-N~i~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~~~~~L~~L~l-s~-N~i~-~l~~-~~~~~~~L~~l 214 (394)
T COG4886 141 NLKELDLSD-NKIESLPSPLRNLPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDL-SG-NKIS-DLPP-EIELLSALEEL 214 (394)
T ss_pred hcccccccc-cchhhhhhhhhccccccccccCCch-hhhhhhhhhhhhhhhheec-cC-Cccc-cCch-hhhhhhhhhhh
Confidence 899999999 4677787778999999999999864 8888876 38899999999 66 5554 3332 23455568888
Q ss_pred EeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccceeeec
Q 045261 85 LIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCIF 164 (227)
Q Consensus 85 ~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~i~ 164 (227)
.+.++. ....+.... .+.++..+.+.+ +.+..++ ..++.++++++|++++ +.+..++..+...+++.++++
T Consensus 215 ~~~~N~-~~~~~~~~~---~~~~l~~l~l~~-n~~~~~~---~~~~~l~~l~~L~~s~-n~i~~i~~~~~~~~l~~L~~s 285 (394)
T COG4886 215 DLSNNS-IIELLSSLS---NLKNLSGLELSN-NKLEDLP---ESIGNLSNLETLDLSN-NQISSISSLGSLTNLRELDLS 285 (394)
T ss_pred hhcCCc-ceecchhhh---hcccccccccCC-ceeeecc---chhccccccceecccc-ccccccccccccCccCEEecc
Confidence 888763 333444333 456666666544 5555555 6677777888888888 567777665556677777777
Q ss_pred CCCCC
Q 045261 165 NCPNL 169 (227)
Q Consensus 165 ~c~~l 169 (227)
+....
T Consensus 286 ~n~~~ 290 (394)
T COG4886 286 GNSLS 290 (394)
T ss_pred Ccccc
Confidence 65443
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.05 E-value=1.1e-05 Score=48.92 Aligned_cols=53 Identities=25% Similarity=0.473 Sum_probs=23.0
Q ss_pred CCccEEEeccCCCCCcCC-cccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEe
Q 045261 5 ESISSVEIRRCEKLGALP-SDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAI 59 (227)
Q Consensus 5 ~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l 59 (227)
|+|+.|++++| .+..+| ..+.++++|++|+++++ .+..+++. ..+++|+.|++
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~~~f~~l~~L~~L~l 56 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFSNLPNLETLDLSNN-NLTSIPPDAFSNLPNLRYLDL 56 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTTTGTTESEEEETSS-SESEEETTTTTTSTTESEEEE
T ss_pred CcCcEEECCCC-CCCccCHHHHcCCCCCCEeEccCC-ccCccCHHHHcCCCCCCEEeC
Confidence 34455555553 344444 23444555555555433 23333332 33444444444
No 41
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.99 E-value=6.8e-07 Score=70.51 Aligned_cols=123 Identities=15% Similarity=0.205 Sum_probs=51.5
Q ss_pred ccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccceEEe
Q 045261 7 ISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLI 86 (227)
Q Consensus 7 L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l 86 (227)
|+.+++|+ +.++.+.+++.-+|+++.|++++. .+..+.....+++|+.|++ ++ +.+. ... ..-..+.+++.|.+
T Consensus 286 LtelDLS~-N~I~~iDESvKL~Pkir~L~lS~N-~i~~v~nLa~L~~L~~LDL-S~-N~Ls-~~~-Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 286 LTELDLSG-NLITQIDESVKLAPKLRRLILSQN-RIRTVQNLAELPQLQLLDL-SG-NLLA-ECV-GWHLKLGNIKTLKL 359 (490)
T ss_pred hhhccccc-cchhhhhhhhhhccceeEEecccc-ceeeehhhhhcccceEeec-cc-chhH-hhh-hhHhhhcCEeeeeh
Confidence 34445555 234444444555555555555543 2333333344455555555 33 2222 111 11223444555555
Q ss_pred ccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecC
Q 045261 87 ERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQD 142 (227)
Q Consensus 87 ~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~ 142 (227)
.++ .+..+.. .+ .+-+|..||+++ +.+..+. ....++++|.|+++.+.+
T Consensus 360 a~N-~iE~LSG-L~---KLYSLvnLDl~~-N~Ie~ld-eV~~IG~LPCLE~l~L~~ 408 (490)
T KOG1259|consen 360 AQN-KIETLSG-LR---KLYSLVNLDLSS-NQIEELD-EVNHIGNLPCLETLRLTG 408 (490)
T ss_pred hhh-hHhhhhh-hH---hhhhheeccccc-cchhhHH-HhcccccccHHHHHhhcC
Confidence 443 3333221 11 334455555554 3333331 013344555555555555
No 42
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.95 E-value=4.9e-07 Score=73.53 Aligned_cols=131 Identities=19% Similarity=0.363 Sum_probs=71.7
Q ss_pred CCCccEEEeccCCCCCcCC-cccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCc
Q 045261 4 PESISSVEIRRCEKLGALP-SDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTS 80 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~ 80 (227)
.+.-..+.+.. +.++.+| .+|+.+++|++|+++.. .+..+.+. ..+.++..|.+ .+-++++ .++...|+.+..
T Consensus 66 P~~tveirLdq-N~I~~iP~~aF~~l~~LRrLdLS~N-~Is~I~p~AF~GL~~l~~Lvl-yg~NkI~-~l~k~~F~gL~s 141 (498)
T KOG4237|consen 66 PPETVEIRLDQ-NQISSIPPGAFKTLHRLRRLDLSKN-NISFIAPDAFKGLASLLSLVL-YGNNKIT-DLPKGAFGGLSS 141 (498)
T ss_pred CCcceEEEecc-CCcccCChhhccchhhhceeccccc-chhhcChHhhhhhHhhhHHHh-hcCCchh-hhhhhHhhhHHH
Confidence 34444555555 3455555 35566666666666653 35555443 44455555555 4445554 444455556666
Q ss_pred cceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCC
Q 045261 81 LRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCP 144 (227)
Q Consensus 81 L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~ 144 (227)
++.|.+..+ .+..++.... ..+++|..|.+.+ +.+..++ ...+..+..++++.+.-.+
T Consensus 142 lqrLllNan-~i~Cir~~al--~dL~~l~lLslyD-n~~q~i~--~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 142 LQRLLLNAN-HINCIRQDAL--RDLPSLSLLSLYD-NKIQSIC--KGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HHHHhcChh-hhcchhHHHH--HHhhhcchhcccc-hhhhhhc--cccccchhccchHhhhcCc
Confidence 666555443 3333322211 1456777777777 6777776 3467777778877776544
No 43
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=97.94 E-value=3.9e-06 Score=66.29 Aligned_cols=176 Identities=13% Similarity=0.144 Sum_probs=99.9
Q ss_pred CCCCccEEEeccCCCCC--------cCCcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCccc-ccccchh
Q 045261 3 LPESISSVEIRRCEKLG--------ALPSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKM-LYKGLVQ 72 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~--------~lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~-l~~~~~~ 72 (227)
|+..|.+|..++....- .+|-.+.-+++|..+.++.|. -.++... ..-+.|+++.+ ..... ......|
T Consensus 180 f~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~-~~~i~~~~~~kptl~t~~v-~~s~~~~~~~l~p 257 (490)
T KOG1259|consen 180 FCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALS-TENIVDIELLKPTLQTICV-HNTTIQDVPSLLP 257 (490)
T ss_pred hhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccc-hhheeceeecCchhheeee-ecccccccccccc
Confidence 56677788877743211 133344567888888888885 2333322 33466666665 32111 1101111
Q ss_pred c--------------------ccccCCccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCC
Q 045261 73 W--------------------GLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSL 132 (227)
Q Consensus 73 ~--------------------~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l 132 (227)
. .+.-.+.|+.++++++ .++.+...+. ..|.++.|+++. +.+..+. .++.+
T Consensus 258 e~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N-~I~~iDESvK---L~Pkir~L~lS~-N~i~~v~----nLa~L 328 (490)
T KOG1259|consen 258 ETILADPSGSEPSTSNGSALVSADTWQELTELDLSGN-LITQIDESVK---LAPKLRRLILSQ-NRIRTVQ----NLAEL 328 (490)
T ss_pred hhhhcCccCCCCCccCCceEEecchHhhhhhcccccc-chhhhhhhhh---hccceeEEeccc-cceeeeh----hhhhc
Confidence 0 0112456788888876 6777777664 678888888887 6777664 37778
Q ss_pred CCccEEeecCCCCCccCCCC-CCCC----------------------ccceeeecCCC--CCCCCCCCCCCCCCcEEeec
Q 045261 133 TSLRRLLIQDCPNLTSLPKV-GLPS----------------------SLLDLCIFNCP--NLTSLPKVGLPSSLLELTIF 187 (227)
Q Consensus 133 ~~L~~L~l~~c~~l~~~~~~-~~~~----------------------~L~~l~i~~c~--~l~~~~~~~~~~~L~~L~l~ 187 (227)
++|++|++++ +.+..+..+ .... +|..|+++++. .++.+...+.+|.|+.+.+.
T Consensus 329 ~~L~~LDLS~-N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~ 407 (490)
T KOG1259|consen 329 PQLQLLDLSG-NLLAECVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLT 407 (490)
T ss_pred ccceEeeccc-chhHhhhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhc
Confidence 8888888887 455554332 1222 34445555422 23333444556777777776
Q ss_pred CCc
Q 045261 188 DCP 190 (227)
Q Consensus 188 ~c~ 190 (227)
+.|
T Consensus 408 ~NP 410 (490)
T KOG1259|consen 408 GNP 410 (490)
T ss_pred CCC
Confidence 665
No 44
>PLN03150 hypothetical protein; Provisional
Probab=97.88 E-value=3.9e-05 Score=68.17 Aligned_cols=111 Identities=16% Similarity=0.135 Sum_probs=81.3
Q ss_pred CcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCC
Q 045261 53 NLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSL 132 (227)
Q Consensus 53 ~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l 132 (227)
.+..|++ .+ +.+.+.+ +..+..+++|+.|+++++.....+|..+. .+++|+.|+++++.....+| ..++++
T Consensus 419 ~v~~L~L-~~-n~L~g~i-p~~i~~L~~L~~L~Ls~N~l~g~iP~~~~---~l~~L~~LdLs~N~lsg~iP---~~l~~L 489 (623)
T PLN03150 419 FIDGLGL-DN-QGLRGFI-PNDISKLRHLQSINLSGNSIRGNIPPSLG---SITSLEVLDLSYNSFNGSIP---ESLGQL 489 (623)
T ss_pred EEEEEEC-CC-CCccccC-CHHHhCCCCCCEEECCCCcccCcCChHHh---CCCCCCEEECCCCCCCCCCc---hHHhcC
Confidence 3778888 65 5555444 44688999999999999855557887775 78999999999966556788 889999
Q ss_pred CCccEEeecCCCCCccCCCC--CCCCccceeeecCCCCCCCC
Q 045261 133 TSLRRLLIQDCPNLTSLPKV--GLPSSLLDLCIFNCPNLTSL 172 (227)
Q Consensus 133 ~~L~~L~l~~c~~l~~~~~~--~~~~~L~~l~i~~c~~l~~~ 172 (227)
++|+.|+++++.--+.+|.. .....+..+++.+++.+-..
T Consensus 490 ~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~ 531 (623)
T PLN03150 490 TSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLCGI 531 (623)
T ss_pred CCCCEEECcCCcccccCChHHhhccccCceEEecCCccccCC
Confidence 99999999997655567763 12234556777766554433
No 45
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.87 E-value=3.8e-07 Score=78.10 Aligned_cols=115 Identities=18% Similarity=0.163 Sum_probs=66.2
Q ss_pred CCCccEEEeccCCCCCc--CCcccCCCCCcceEeecCC-CCCcccC----CC-CCCCCcceeEeccCcccccccchhccc
Q 045261 4 PESISSVEIRRCEKLGA--LPSDMHKLNSLQDLDIREC-PSIVSFP----EE-GFPTNLTSLAIGEDMKMLYKGLVQWGL 75 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~--lp~~~~~l~~L~~L~l~~c-~~l~~~~----~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~ 75 (227)
+++|+.|.+.+|..++. +-.....++.|+.|++++| ......+ .. ..+.+|+.+++ +.|..+++.......
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l-~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDL-SGCGLVTDIGLSALA 265 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccch-hhhhccCchhHHHHH
Confidence 56777777777777665 3344567777888877762 2222222 11 45577777777 776665544333323
Q ss_pred ccCCccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCcc
Q 045261 76 HRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLK 120 (227)
Q Consensus 76 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~ 120 (227)
..+++|+.|.+.+|..+++...... ...+++|++|++++|..+.
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i-~~~~~~L~~L~l~~c~~~~ 309 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSI-AERCPSLRELDLSGCHGLT 309 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHH-HHhcCcccEEeeecCccch
Confidence 3467777777666654433221111 0145677777777776653
No 46
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.71 E-value=4e-05 Score=43.10 Aligned_cols=40 Identities=18% Similarity=0.517 Sum_probs=31.4
Q ss_pred CCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccC
Q 045261 5 ESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFP 46 (227)
Q Consensus 5 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~ 46 (227)
++|++|+++++ .++++|..+++|++|+.|++++++ +.+++
T Consensus 1 ~~L~~L~l~~N-~i~~l~~~l~~l~~L~~L~l~~N~-i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNN-QITDLPPELSNLPNLETLNLSNNP-ISDIS 40 (44)
T ss_dssp TT-SEEEETSS-S-SSHGGHGTTCTTSSEEEETSSC-CSBEG
T ss_pred CcceEEEccCC-CCcccCchHhCCCCCCEEEecCCC-CCCCc
Confidence 58999999995 677888879999999999999874 66554
No 47
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.64 E-value=3.6e-06 Score=72.14 Aligned_cols=91 Identities=18% Similarity=0.194 Sum_probs=64.9
Q ss_pred CCCCccEEEecc-CCCCCcCC----cccCCCCCcceEeecCCCCCcccCCC---CCCCCcceeEeccCcccccccchhcc
Q 045261 3 LPESISSVEIRR-CEKLGALP----SDMHKLNSLQDLDIRECPSIVSFPEE---GFPTNLTSLAIGEDMKMLYKGLVQWG 74 (227)
Q Consensus 3 ~~~~L~~L~l~~-~~~l~~lp----~~~~~l~~L~~L~l~~c~~l~~~~~~---~~l~~L~~L~l~~~~~~l~~~~~~~~ 74 (227)
.+++|+.|++++ |......+ .....+++|+++++++|..+.+.... ..+++|+.|.+ .+|..+++......
T Consensus 212 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l-~~c~~lt~~gl~~i 290 (482)
T KOG1947|consen 212 KCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSL-SNCSNLTDEGLVSI 290 (482)
T ss_pred hCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEcc-CCCCccchhHHHHH
Confidence 467899999988 33333322 23356788999999998766554433 45889999998 88887765544555
Q ss_pred cccCCccceEEeccCCCCCc
Q 045261 75 LHRLTSLRWLLIERCDESEC 94 (227)
Q Consensus 75 ~~~l~~L~~L~l~~~~~l~~ 94 (227)
...+++|++|++++|..+.+
T Consensus 291 ~~~~~~L~~L~l~~c~~~~d 310 (482)
T KOG1947|consen 291 AERCPSLRELDLSGCHGLTD 310 (482)
T ss_pred HHhcCcccEEeeecCccchH
Confidence 67788899999999877643
No 48
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.43 E-value=3.5e-05 Score=68.88 Aligned_cols=127 Identities=22% Similarity=0.125 Sum_probs=73.8
Q ss_pred CCCcceeEeccCcccccccchhccc-ccCCccceEEeccCCCC-CccCccCcCCCCCCccceEEEecCCCccccCCCCCC
Q 045261 51 PTNLTSLAIGEDMKMLYKGLVQWGL-HRLTSLRWLLIERCDES-ECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSG 128 (227)
Q Consensus 51 l~~L~~L~l~~~~~~l~~~~~~~~~-~~l~~L~~L~l~~~~~l-~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~ 128 (227)
-.+|+.|+| ++-..+. .-++..+ .-+|+|+.|.+.+-... .++..... ++|+|..|||++ .++..+ .+
T Consensus 121 r~nL~~LdI-~G~~~~s-~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~---sFpNL~sLDIS~-TnI~nl----~G 190 (699)
T KOG3665|consen 121 RQNLQHLDI-SGSELFS-NGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCA---SFPNLRSLDISG-TNISNL----SG 190 (699)
T ss_pred HHhhhhcCc-cccchhh-ccHHHHHhhhCcccceEEecCceecchhHHHHhh---ccCccceeecCC-CCccCc----HH
Confidence 367777777 6644443 2222222 34788888888773221 11222232 678888888888 566666 46
Q ss_pred ccCCCCccEEeecCCCCCccCC---CCCCCCccceeeecCCCCCCCC-------CCCCCCCCCcEEeecC
Q 045261 129 FHSLTSLRRLLIQDCPNLTSLP---KVGLPSSLLDLCIFNCPNLTSL-------PKVGLPSSLLELTIFD 188 (227)
Q Consensus 129 l~~l~~L~~L~l~~c~~l~~~~---~~~~~~~L~~l~i~~c~~l~~~-------~~~~~~~~L~~L~l~~ 188 (227)
++++++|+.|.+.+.. +..-. +--.+++|+.|||+.-.....- .....+|+|+.||.++
T Consensus 191 IS~LknLq~L~mrnLe-~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 191 ISRLKNLQVLSMRNLE-FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred HhccccHHHHhccCCC-CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 7778888887777633 22211 1124677888888864333221 1133478889998886
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.43 E-value=0.00011 Score=41.33 Aligned_cols=38 Identities=16% Similarity=0.410 Sum_probs=21.5
Q ss_pred ccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccC
Q 045261 107 SLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSL 149 (227)
Q Consensus 107 ~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~ 149 (227)
+|++|++++ +.+.++| ..++++++|+.|+++++ .++++
T Consensus 2 ~L~~L~l~~-N~i~~l~---~~l~~l~~L~~L~l~~N-~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSN-NQITDLP---PELSNLPNLETLNLSNN-PISDI 39 (44)
T ss_dssp T-SEEEETS-SS-SSHG---GHGTTCTTSSEEEETSS-CCSBE
T ss_pred cceEEEccC-CCCcccC---chHhCCCCCCEEEecCC-CCCCC
Confidence 566666666 4666665 44666666666666663 34443
No 50
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.37 E-value=3.3e-06 Score=73.83 Aligned_cols=19 Identities=32% Similarity=0.691 Sum_probs=11.9
Q ss_pred CcccCCCCCcceEeecCCC
Q 045261 22 PSDMHKLNSLQDLDIRECP 40 (227)
Q Consensus 22 p~~~~~l~~L~~L~l~~c~ 40 (227)
|-.+..+.+|++|.+.+|+
T Consensus 102 pi~ifpF~sLr~LElrg~~ 120 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCD 120 (1096)
T ss_pred CceeccccceeeEEecCcc
Confidence 4445566677777777664
No 51
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.36 E-value=4.2e-05 Score=64.74 Aligned_cols=78 Identities=22% Similarity=0.246 Sum_probs=34.3
Q ss_pred CCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccceE
Q 045261 5 ESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWL 84 (227)
Q Consensus 5 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L 84 (227)
.+|..|++.++ .+..+...+..+++|++|++++. .+..+.....+..|+.|++ .+ +.+. ....+..+.+|+.+
T Consensus 95 ~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~ls~N-~I~~i~~l~~l~~L~~L~l-~~-N~i~---~~~~~~~l~~L~~l 167 (414)
T KOG0531|consen 95 KSLEALDLYDN-KIEKIENLLSSLVNLQVLDLSFN-KITKLEGLSTLTLLKELNL-SG-NLIS---DISGLESLKSLKLL 167 (414)
T ss_pred cceeeeecccc-chhhcccchhhhhcchheecccc-ccccccchhhccchhhhee-cc-Ccch---hccCCccchhhhcc
Confidence 44444555542 33333322444555555555542 3444444444444555555 33 2332 11123334555555
Q ss_pred EeccC
Q 045261 85 LIERC 89 (227)
Q Consensus 85 ~l~~~ 89 (227)
++.++
T Consensus 168 ~l~~n 172 (414)
T KOG0531|consen 168 DLSYN 172 (414)
T ss_pred cCCcc
Confidence 55544
No 52
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.33 E-value=8.4e-05 Score=66.47 Aligned_cols=128 Identities=22% Similarity=0.187 Sum_probs=66.8
Q ss_pred CccEEEeccCCCCC-cCCccc-CCCCCcceEeecCCCCCc-ccCCC-CCCCCcceeEeccCcccccccchhcccccCCcc
Q 045261 6 SISSVEIRRCEKLG-ALPSDM-HKLNSLQDLDIRECPSIV-SFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSL 81 (227)
Q Consensus 6 ~L~~L~l~~~~~l~-~lp~~~-~~l~~L~~L~l~~c~~l~-~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L 81 (227)
+|+.|+++|...+. .+|..+ ..||+|++|.+.+-.... ++... .++++|..|+| ++++--. .++++++++|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDI-S~TnI~n----l~GIS~LknL 197 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDI-SGTNISN----LSGISRLKNL 197 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeec-CCCCccC----cHHHhccccH
Confidence 56777777744332 233333 356777777776633211 22222 56777777777 7744332 2467777777
Q ss_pred ceEEeccCCCCCccC--ccCcCCCCCCccceEEEecCCCcccc--CC-CCCCccCCCCccEEeecC
Q 045261 82 RWLLIERCDESECFP--DGMMGMTLPTSLVHLNIVEFQKLKNL--SS-SSSGFHSLTSLRRLLIQD 142 (227)
Q Consensus 82 ~~L~l~~~~~l~~l~--~~~~~~~~~~~L~~L~l~~~~~l~~l--~~-~~~~l~~l~~L~~L~l~~ 142 (227)
+.|.+++. .+.... .+.. .+.+|+.||++.-.....- .. -.+.-..+|.|+.|+.++
T Consensus 198 q~L~mrnL-e~e~~~~l~~LF---~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 198 QVLSMRNL-EFESYQDLIDLF---NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred HHHhccCC-CCCchhhHHHHh---cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC
Confidence 77777765 222211 0111 5677777777753332221 00 001222466777777765
No 53
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.15 E-value=4.2e-05 Score=64.71 Aligned_cols=126 Identities=20% Similarity=0.226 Sum_probs=86.4
Q ss_pred CccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCC-CCCCCCcceeEeccCcccccccchhcccccCCccceE
Q 045261 6 SISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPE-EGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWL 84 (227)
Q Consensus 6 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~-~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L 84 (227)
.++.+.+.. ..++.+-..+..+.+|..+++.+. .+..+.. ...+++|+.|++ ++ +.++ . ..++..++.|+.|
T Consensus 73 ~l~~l~l~~-n~i~~~~~~l~~~~~l~~l~l~~n-~i~~i~~~l~~~~~L~~L~l-s~-N~I~-~--i~~l~~l~~L~~L 145 (414)
T KOG0531|consen 73 SLKELNLRQ-NLIAKILNHLSKLKSLEALDLYDN-KIEKIENLLSSLVNLQVLDL-SF-NKIT-K--LEGLSTLTLLKEL 145 (414)
T ss_pred hHHhhccch-hhhhhhhcccccccceeeeecccc-chhhcccchhhhhcchheec-cc-cccc-c--ccchhhccchhhh
Confidence 344444444 234443344678888999999874 5777777 578899999999 55 5554 2 2357778889999
Q ss_pred EeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCC-ccCCCCccEEeecCCCCCcc
Q 045261 85 LIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSG-FHSLTSLRRLLIQDCPNLTS 148 (227)
Q Consensus 85 ~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~-l~~l~~L~~L~l~~c~~l~~ 148 (227)
.+.++ .++.+.... .+++|+.+++++ +.+..+. .. +..+.+++.+++.+ +.+..
T Consensus 146 ~l~~N-~i~~~~~~~----~l~~L~~l~l~~-n~i~~ie---~~~~~~~~~l~~l~l~~-n~i~~ 200 (414)
T KOG0531|consen 146 NLSGN-LISDISGLE----SLKSLKLLDLSY-NRIVDIE---NDELSELISLEELDLGG-NSIRE 200 (414)
T ss_pred eeccC-cchhccCCc----cchhhhcccCCc-chhhhhh---hhhhhhccchHHHhccC-Cchhc
Confidence 99987 777666544 478888888888 5666665 22 46778888888877 34443
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.27 E-value=0.018 Score=43.43 Aligned_cols=102 Identities=12% Similarity=0.117 Sum_probs=62.8
Q ss_pred ccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCcc-CCCCccEEeecCCCCCccCCC---CCCC
Q 045261 80 SLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFH-SLTSLRRLLIQDCPNLTSLPK---VGLP 155 (227)
Q Consensus 80 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~-~l~~L~~L~l~~c~~l~~~~~---~~~~ 155 (227)
+...++++++ .+..++..- .++.|.+|.+.+ +.+..+. ..+. .+++|+.|.+.+ +.+.++.+ -..+
T Consensus 43 ~~d~iDLtdN-dl~~l~~lp----~l~rL~tLll~n-NrIt~I~---p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~ 112 (233)
T KOG1644|consen 43 QFDAIDLTDN-DLRKLDNLP----HLPRLHTLLLNN-NRITRID---PDLDTFLPNLKTLILTN-NSIQELGDLDPLASC 112 (233)
T ss_pred ccceeccccc-chhhcccCC----CccccceEEecC-Ccceeec---cchhhhccccceEEecC-cchhhhhhcchhccC
Confidence 3455666665 444444332 467788888876 6777775 4444 456788888888 55655543 2345
Q ss_pred CccceeeecCCCCCCCCCC----CCCCCCCcEEeecCCch
Q 045261 156 SSLLDLCIFNCPNLTSLPK----VGLPSSLLELTIFDCPK 191 (227)
Q Consensus 156 ~~L~~l~i~~c~~l~~~~~----~~~~~~L~~L~l~~c~~ 191 (227)
+.|++|.+-+++.-..-.. ...+|+|+.||+.+...
T Consensus 113 p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 113 PKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred CccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 6777777776553222111 12378889998887653
No 55
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.07 E-value=0.00015 Score=63.81 Aligned_cols=102 Identities=18% Similarity=0.186 Sum_probs=66.5
Q ss_pred CCCCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCc
Q 045261 2 RLPESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTS 80 (227)
Q Consensus 2 ~~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~ 80 (227)
++++.|+.|+++.+. ++++. .+..+++|++|+++++ .+..+|.. ..-..|..|.+ ++ +.++ .-.++.++.+
T Consensus 184 qll~ale~LnLshNk-~~~v~-~Lr~l~~LkhLDlsyN-~L~~vp~l~~~gc~L~~L~l-rn-N~l~---tL~gie~Lks 255 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNK-FTKVD-NLRRLPKLKHLDLSYN-CLRHVPQLSMVGCKLQLLNL-RN-NALT---TLRGIENLKS 255 (1096)
T ss_pred HHHHHhhhhccchhh-hhhhH-HHHhcccccccccccc-hhccccccchhhhhheeeee-cc-cHHH---hhhhHHhhhh
Confidence 467888999999854 44444 5678888999999874 57777655 22234888888 65 5554 2336788888
Q ss_pred cceEEeccCCCCCc---cCccCcCCCCCCccceEEEecC
Q 045261 81 LRWLLIERCDESEC---FPDGMMGMTLPTSLVHLNIVEF 116 (227)
Q Consensus 81 L~~L~l~~~~~l~~---l~~~~~~~~~~~~L~~L~l~~~ 116 (227)
|+.|+++++ .+.. +..-| .+..|..|.+.++
T Consensus 256 L~~LDlsyN-ll~~hseL~pLw----sLs~L~~L~LeGN 289 (1096)
T KOG1859|consen 256 LYGLDLSYN-LLSEHSELEPLW----SLSSLIVLWLEGN 289 (1096)
T ss_pred hhccchhHh-hhhcchhhhHHH----HHHHHHHHhhcCC
Confidence 999998874 3322 22222 3456666666663
No 56
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.93 E-value=0.0031 Score=29.59 Aligned_cols=21 Identities=14% Similarity=0.420 Sum_probs=14.3
Q ss_pred CccEEEeccCCCCCcCCcccCC
Q 045261 6 SISSVEIRRCEKLGALPSDMHK 27 (227)
Q Consensus 6 ~L~~L~l~~~~~l~~lp~~~~~ 27 (227)
+|++|++++| .++.+|.++++
T Consensus 1 ~L~~Ldls~n-~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGN-NLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSS-EESEEGTTTTT
T ss_pred CccEEECCCC-cCEeCChhhcC
Confidence 5778888887 56677765544
No 57
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.90 E-value=0.00055 Score=51.22 Aligned_cols=63 Identities=22% Similarity=0.354 Sum_probs=31.8
Q ss_pred CCCCCcceEeecCCCCCcccCCC---CCCCCcceeEeccCcccccccchhcccccCCccceEEeccCC
Q 045261 26 HKLNSLQDLDIRECPSIVSFPEE---GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCD 90 (227)
Q Consensus 26 ~~l~~L~~L~l~~c~~l~~~~~~---~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~ 90 (227)
.+++.++.|.+.+|..+.+..-. +..++|+.|+| ++|..+++.-.. .+..+++|+.|.+.+.+
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~l-sgC~rIT~~GL~-~L~~lknLr~L~l~~l~ 187 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDL-SGCPRITDGGLA-CLLKLKNLRRLHLYDLP 187 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcccccchheeec-cCCCeechhHHH-HHHHhhhhHHHHhcCch
Confidence 44555555556555554433221 34456666666 666666533222 24455555555555543
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.87 E-value=0.022 Score=42.88 Aligned_cols=107 Identities=14% Similarity=0.098 Sum_probs=58.2
Q ss_pred CcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCccCcCCCCCCccc
Q 045261 30 SLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLV 109 (227)
Q Consensus 30 ~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~ 109 (227)
....+++++. .+..++....++.|.+|.+ +.+.++ .+.+....-+++|+.|.+.++ .+.++.+-- .+..+|+|+
T Consensus 43 ~~d~iDLtdN-dl~~l~~lp~l~rL~tLll--~nNrIt-~I~p~L~~~~p~l~~L~LtnN-si~~l~dl~-pLa~~p~L~ 116 (233)
T KOG1644|consen 43 QFDAIDLTDN-DLRKLDNLPHLPRLHTLLL--NNNRIT-RIDPDLDTFLPNLKTLILTNN-SIQELGDLD-PLASCPKLE 116 (233)
T ss_pred ccceeccccc-chhhcccCCCccccceEEe--cCCcce-eeccchhhhccccceEEecCc-chhhhhhcc-hhccCCccc
Confidence 3445666653 3555555556677777777 335665 444433344667777777765 444443211 112567777
Q ss_pred eEEEecCCCccccCC-CCCCccCCCCccEEeecCC
Q 045261 110 HLNIVEFQKLKNLSS-SSSGFHSLTSLRRLLIQDC 143 (227)
Q Consensus 110 ~L~l~~~~~l~~l~~-~~~~l~~l~~L~~L~l~~c 143 (227)
+|.+-+++ +..-.. -...+-.+|+|+.|++...
T Consensus 117 ~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 117 YLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eeeecCCc-hhcccCceeEEEEecCcceEeehhhh
Confidence 77776632 222110 0022335678888877763
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.75 E-value=0.00035 Score=49.24 Aligned_cols=60 Identities=13% Similarity=0.210 Sum_probs=35.9
Q ss_pred ccCCccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecC
Q 045261 76 HRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQD 142 (227)
Q Consensus 76 ~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~ 142 (227)
.....|+..+++++ .++++|..+. ..++..+.|.+.+ +.+.++| .++..++.|+.+++..
T Consensus 50 ~~~~el~~i~ls~N-~fk~fp~kft--~kf~t~t~lNl~~-neisdvP---eE~Aam~aLr~lNl~~ 109 (177)
T KOG4579|consen 50 SKGYELTKISLSDN-GFKKFPKKFT--IKFPTATTLNLAN-NEISDVP---EELAAMPALRSLNLRF 109 (177)
T ss_pred hCCceEEEEecccc-hhhhCCHHHh--hccchhhhhhcch-hhhhhch---HHHhhhHHhhhccccc
Confidence 33444555566664 5666665553 2455666666665 5666666 5566666666666666
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.66 E-value=0.11 Score=35.94 Aligned_cols=104 Identities=17% Similarity=0.249 Sum_probs=43.2
Q ss_pred ccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCccCcC
Q 045261 24 DMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMG 101 (227)
Q Consensus 24 ~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~ 101 (227)
.+.++++|+.+.+.. .+..++.. ..+++|+.+.+ .+ .+. .+....+..+++|+.+.+.. .+..++....
T Consensus 7 ~F~~~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~-~~--~~~-~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F- 77 (129)
T PF13306_consen 7 AFYNCSNLESITFPN--TIKKIGENAFSNCTSLKSINF-PN--NLT-SIGDNAFSNCKSLESITFPN--NLKSIGDNAF- 77 (129)
T ss_dssp TTTT-TT--EEEETS--T--EE-TTTTTT-TT-SEEEE-SS--TTS-CE-TTTTTT-TT-EEEEETS--TT-EE-TTTT-
T ss_pred HHhCCCCCCEEEECC--CeeEeChhhcccccccccccc-cc--ccc-ccceeeeecccccccccccc--cccccccccc-
Confidence 345566666666653 35555544 45556666666 43 132 33344556665666666653 3444443332
Q ss_pred CCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecC
Q 045261 102 MTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQD 142 (227)
Q Consensus 102 ~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~ 142 (227)
..+++|+.+++.. .+..++ ...+.+. +|+.+.+..
T Consensus 78 -~~~~~l~~i~~~~--~~~~i~--~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 78 -SNCTNLKNIDIPS--NITEIG--SSSFSNC-NLKEINIPS 112 (129)
T ss_dssp -TT-TTECEEEETT--T-BEEH--TTTTTT--T--EEE-TT
T ss_pred -cccccccccccCc--cccEEc--hhhhcCC-CceEEEECC
Confidence 1355666666643 344444 3445554 666665543
No 61
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.65 E-value=0.0027 Score=51.41 Aligned_cols=177 Identities=12% Similarity=0.084 Sum_probs=102.3
Q ss_pred CCCccEEEeccCCCCCcCCc----ccCCCCCcceEeecCCCCCcccC---------------CCCCCCCcceeEeccCcc
Q 045261 4 PESISSVEIRRCEKLGALPS----DMHKLNSLQDLDIRECPSIVSFP---------------EEGFPTNLTSLAIGEDMK 64 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~----~~~~l~~L~~L~l~~c~~l~~~~---------------~~~~l~~L~~L~l~~~~~ 64 (227)
+|.|+.|+||++-.-..-+. -+.++..|++|.+.+|. +.... ...+.++|+++.. .. +
T Consensus 91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~-~r-N 167 (382)
T KOG1909|consen 91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFIC-GR-N 167 (382)
T ss_pred CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEe-ec-c
Confidence 35788888888643333222 33567888888888885 22111 1146678888877 33 4
Q ss_pred ccccc---chhcccccCCccceEEeccCCCCC-----ccCccCcCCCCCCccceEEEecCCCccc----cCCCCCCccCC
Q 045261 65 MLYKG---LVQWGLHRLTSLRWLLIERCDESE-----CFPDGMMGMTLPTSLVHLNIVEFQKLKN----LSSSSSGFHSL 132 (227)
Q Consensus 65 ~l~~~---~~~~~~~~l~~L~~L~l~~~~~l~-----~l~~~~~~~~~~~~L~~L~l~~~~~l~~----l~~~~~~l~~l 132 (227)
.+.+. .+...++..+.|+.+.+..+ .+. .+-..+ ..++.|+.||+.++..-.. +. ..+..+
T Consensus 168 rlen~ga~~~A~~~~~~~~leevr~~qN-~I~~eG~~al~eal---~~~~~LevLdl~DNtft~egs~~La---kaL~s~ 240 (382)
T KOG1909|consen 168 RLENGGATALAEAFQSHPTLEEVRLSQN-GIRPEGVTALAEAL---EHCPHLEVLDLRDNTFTLEGSVALA---KALSSW 240 (382)
T ss_pred ccccccHHHHHHHHHhccccceEEEecc-cccCchhHHHHHHH---HhCCcceeeecccchhhhHHHHHHH---HHhccc
Confidence 44311 12234566778888887764 222 112222 2678899999988433211 22 345567
Q ss_pred CCccEEeecCCCCCccCCC-------CCCCCccceeeecCCCCCCCCC-----CCCCCCCCcEEeecCCch
Q 045261 133 TSLRRLLIQDCPNLTSLPK-------VGLPSSLLDLCIFNCPNLTSLP-----KVGLPSSLLELTIFDCPK 191 (227)
Q Consensus 133 ~~L~~L~l~~c~~l~~~~~-------~~~~~~L~~l~i~~c~~l~~~~-----~~~~~~~L~~L~l~~c~~ 191 (227)
++|+.|++++|. ++.-.. ....++|+.+.+.+|..-.+-. ...-.+.|++|++.+|..
T Consensus 241 ~~L~El~l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 241 PHLRELNLGDCL-LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred chheeecccccc-cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 888999998885 332111 1236788888887765322210 011257788888888753
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=95.57 E-value=0.0013 Score=46.40 Aligned_cols=112 Identities=15% Similarity=0.126 Sum_probs=74.4
Q ss_pred cceEeecCCCCCcccCCC----CCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCccCcCCCCCC
Q 045261 31 LQDLDIRECPSIVSFPEE----GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPT 106 (227)
Q Consensus 31 L~~L~l~~c~~l~~~~~~----~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~ 106 (227)
+..+++++|. +-+++.. .....|+..++ ++ +.+. .+++.....++.++.|++.++ .+.++|.++. .++
T Consensus 29 ~h~ldLssc~-lm~i~davy~l~~~~el~~i~l-s~-N~fk-~fp~kft~kf~t~t~lNl~~n-eisdvPeE~A---am~ 100 (177)
T KOG4579|consen 29 LHFLDLSSCQ-LMYIADAVYMLSKGYELTKISL-SD-NGFK-KFPKKFTIKFPTATTLNLANN-EISDVPEELA---AMP 100 (177)
T ss_pred hhhcccccch-hhHHHHHHHHHhCCceEEEEec-cc-chhh-hCCHHHhhccchhhhhhcchh-hhhhchHHHh---hhH
Confidence 4456777775 3333322 34466777788 66 5555 444544456677889999986 8889999876 789
Q ss_pred ccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCC
Q 045261 107 SLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLP 155 (227)
Q Consensus 107 ~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~ 155 (227)
.|+.|.++. +.+...| ..+..+.++..|+.-+ +.+..++...+.
T Consensus 101 aLr~lNl~~-N~l~~~p---~vi~~L~~l~~Lds~~-na~~eid~dl~~ 144 (177)
T KOG4579|consen 101 ALRSLNLRF-NPLNAEP---RVIAPLIKLDMLDSPE-NARAEIDVDLFY 144 (177)
T ss_pred Hhhhccccc-Cccccch---HHHHHHHhHHHhcCCC-CccccCcHHHhc
Confidence 999999988 5666666 5555567777777666 556666654333
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=95.56 E-value=0.074 Score=36.83 Aligned_cols=116 Identities=14% Similarity=0.226 Sum_probs=59.0
Q ss_pred CCCccEEEeccCCCCCcCC-cccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCc
Q 045261 4 PESISSVEIRRCEKLGALP-SDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTS 80 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~ 80 (227)
+++|+.+.+.. .+..++ ..+.++++|+.+.+.. .+..++.. ..+++++.+.+ .+ .+. .+....+..+++
T Consensus 11 ~~~l~~i~~~~--~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~-~~--~~~-~i~~~~F~~~~~ 82 (129)
T PF13306_consen 11 CSNLESITFPN--TIKKIGENAFSNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITF-PN--NLK-SIGDNAFSNCTN 82 (129)
T ss_dssp -TT--EEEETS--T--EE-TTTTTT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEE-TS--TT--EE-TTTTTT-TT
T ss_pred CCCCCEEEECC--CeeEeChhhcccccccccccccc--cccccceeeeecccccccccc-cc--ccc-cccccccccccc
Confidence 35788888875 355555 4578888999999976 37777665 66778999999 54 332 334556788999
Q ss_pred cceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCcc
Q 045261 81 LRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLR 136 (227)
Q Consensus 81 L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~ 136 (227)
|+.+.+.. .+..++.... ... +|+.+.+.+ .+..++ ...+.++++|+
T Consensus 83 l~~i~~~~--~~~~i~~~~f--~~~-~l~~i~~~~--~~~~i~--~~~F~~~~~l~ 129 (129)
T PF13306_consen 83 LKNIDIPS--NITEIGSSSF--SNC-NLKEINIPS--NITKIE--ENAFKNCTKLK 129 (129)
T ss_dssp ECEEEETT--T-BEEHTTTT--TT--T--EEE-TT--B-SS------GGG------
T ss_pred ccccccCc--cccEEchhhh--cCC-CceEEEECC--CccEEC--CccccccccCC
Confidence 99999875 3666665443 134 777777653 555555 45566655553
No 64
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.27 E-value=0.011 Score=46.06 Aligned_cols=87 Identities=20% Similarity=0.189 Sum_probs=43.7
Q ss_pred CCCCcceeEeccCcccccccchhcccccCCccceEEeccCCC--CCccCccCcCCCCCCccceEEEecCCCccccCCCCC
Q 045261 50 FPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDE--SECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSS 127 (227)
Q Consensus 50 ~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~--l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~ 127 (227)
.+..|+.+.+ .++...+ ...+-.+++|++|.++.++. ...++.-.. .+|+|+++.+++ +.+..+. +..
T Consensus 41 ~~~~le~ls~-~n~gltt----~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e---~~P~l~~l~ls~-Nki~~ls-tl~ 110 (260)
T KOG2739|consen 41 EFVELELLSV-INVGLTT----LTNFPKLPKLKKLELSDNYRRVSGGLEVLAE---KAPNLKVLNLSG-NKIKDLS-TLR 110 (260)
T ss_pred cccchhhhhh-hccceee----cccCCCcchhhhhcccCCcccccccceehhh---hCCceeEEeecC-Ccccccc-ccc
Confidence 4455555555 5544332 11344566677777765522 222222221 346777777766 4444321 123
Q ss_pred CccCCCCccEEeecCCCCC
Q 045261 128 GFHSLTSLRRLLIQDCPNL 146 (227)
Q Consensus 128 ~l~~l~~L~~L~l~~c~~l 146 (227)
.+..+.+|..|++.+|.-.
T Consensus 111 pl~~l~nL~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 111 PLKELENLKSLDLFNCSVT 129 (260)
T ss_pred hhhhhcchhhhhcccCCcc
Confidence 4455566666666666543
No 65
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.25 E-value=0.0015 Score=48.88 Aligned_cols=90 Identities=21% Similarity=0.316 Sum_probs=54.0
Q ss_pred CcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCC
Q 045261 53 NLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSL 132 (227)
Q Consensus 53 ~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l 132 (227)
.++.++- +++.... . -..-+..+++++.|.+.+|..+.+.-.+..+. ..++|+.|++++|..+++-. ..++..+
T Consensus 102 ~IeaVDA-sds~I~~-e-Gle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~-~~~~L~~L~lsgC~rIT~~G--L~~L~~l 175 (221)
T KOG3864|consen 102 KIEAVDA-SDSSIMY-E-GLEHLRDLRSIKSLSLANCKYFDDWCLERLGG-LAPSLQDLDLSGCPRITDGG--LACLLKL 175 (221)
T ss_pred eEEEEec-CCchHHH-H-HHHHHhccchhhhheeccccchhhHHHHHhcc-cccchheeeccCCCeechhH--HHHHHHh
Confidence 4455555 5543332 1 11124556677777777776665543222111 46788888888888887754 4666777
Q ss_pred CCccEEeecCCCCCcc
Q 045261 133 TSLRRLLIQDCPNLTS 148 (227)
Q Consensus 133 ~~L~~L~l~~c~~l~~ 148 (227)
++|+.|.+.+.+.+..
T Consensus 176 knLr~L~l~~l~~v~~ 191 (221)
T KOG3864|consen 176 KNLRRLHLYDLPYVAN 191 (221)
T ss_pred hhhHHHHhcCchhhhc
Confidence 8888888877554433
No 66
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.12 E-value=0.017 Score=46.15 Aligned_cols=83 Identities=12% Similarity=0.062 Sum_probs=43.4
Q ss_pred CCCccEEEeccCCCCCcCCc---ccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCC
Q 045261 4 PESISSVEIRRCEKLGALPS---DMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLT 79 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~---~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~ 79 (227)
++.++.+++.++ .+..+.+ .+.++|.|+.|+++..+.-..+... .-..+|+.|.+ -+ ..+.-......+..+|
T Consensus 70 ~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVL-Ng-T~L~w~~~~s~l~~lP 146 (418)
T KOG2982|consen 70 VTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVL-NG-TGLSWTQSTSSLDDLP 146 (418)
T ss_pred hhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEE-cC-CCCChhhhhhhhhcch
Confidence 345667777774 3444332 3467888888888654322222222 23467777777 33 2222111222345566
Q ss_pred ccceEEeccC
Q 045261 80 SLRWLLIERC 89 (227)
Q Consensus 80 ~L~~L~l~~~ 89 (227)
.++.|.++.+
T Consensus 147 ~vtelHmS~N 156 (418)
T KOG2982|consen 147 KVTELHMSDN 156 (418)
T ss_pred hhhhhhhccc
Confidence 6666665543
No 67
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.02 E-value=0.00066 Score=53.41 Aligned_cols=61 Identities=20% Similarity=0.207 Sum_probs=27.6
Q ss_pred CCccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccC
Q 045261 78 LTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSL 149 (227)
Q Consensus 78 l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~ 149 (227)
+.+.++|+.++| .+.++..-. .++.|+.|.++- +.+..+ ..+.++++|++|++.. +.|.++
T Consensus 18 l~~vkKLNcwg~-~L~DIsic~----kMp~lEVLsLSv-NkIssL----~pl~rCtrLkElYLRk-N~I~sl 78 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDISICE----KMPLLEVLSLSV-NKISSL----APLQRCTRLKELYLRK-NCIESL 78 (388)
T ss_pred HHHhhhhcccCC-CccHHHHHH----hcccceeEEeec-cccccc----hhHHHHHHHHHHHHHh-cccccH
Confidence 334455555554 444443322 345555555543 444443 2344555555555544 334443
No 68
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.64 E-value=0.024 Score=24.68 Aligned_cols=16 Identities=13% Similarity=0.387 Sum_probs=7.4
Q ss_pred CCccEEEeccCCCCCcC
Q 045261 5 ESISSVEIRRCEKLGAL 21 (227)
Q Consensus 5 ~~L~~L~l~~~~~l~~l 21 (227)
++|+.|++++|. ++++
T Consensus 1 ~~L~~L~l~~n~-L~~l 16 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSL 16 (17)
T ss_dssp TT-SEEEETSS---SSE
T ss_pred CccCEEECCCCC-CCCC
Confidence 356666666654 4443
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.64 E-value=0.044 Score=42.78 Aligned_cols=113 Identities=16% Similarity=0.144 Sum_probs=65.7
Q ss_pred CCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcc--cccccchhcccccCCccceEEeccCCCCCccCccCcCCC
Q 045261 26 HKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMK--MLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMT 103 (227)
Q Consensus 26 ~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~--~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~ 103 (227)
-.+..|+.+++.++. +..+.....+++|+.|.+ ++ + ...... +-.+..+++|++++++++ .+..+ .......
T Consensus 40 d~~~~le~ls~~n~g-ltt~~~~P~Lp~LkkL~l-sd-n~~~~~~~l-~vl~e~~P~l~~l~ls~N-ki~~l-stl~pl~ 113 (260)
T KOG2739|consen 40 DEFVELELLSVINVG-LTTLTNFPKLPKLKKLEL-SD-NYRRVSGGL-EVLAEKAPNLKVLNLSGN-KIKDL-STLRPLK 113 (260)
T ss_pred ccccchhhhhhhccc-eeecccCCCcchhhhhcc-cC-Ccccccccc-eehhhhCCceeEEeecCC-ccccc-cccchhh
Confidence 455667777777764 444444457889999998 55 4 332222 223455699999999986 44432 1111112
Q ss_pred CCCccceEEEecCCCccccC-CCCCCccCCCCccEEeecCCCC
Q 045261 104 LPTSLVHLNIVEFQKLKNLS-SSSSGFHSLTSLRRLLIQDCPN 145 (227)
Q Consensus 104 ~~~~L~~L~l~~~~~l~~l~-~~~~~l~~l~~L~~L~l~~c~~ 145 (227)
.+.+|.+|++.+|.-.. +. --..-+.-+++|+.|+-..+..
T Consensus 114 ~l~nL~~Ldl~n~~~~~-l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 114 ELENLKSLDLFNCSVTN-LDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred hhcchhhhhcccCCccc-cccHHHHHHHHhhhhccccccccCC
Confidence 46678888888875433 21 0002233567888887766543
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.16 E-value=0.0028 Score=50.01 Aligned_cols=104 Identities=18% Similarity=0.144 Sum_probs=61.2
Q ss_pred CCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCccCcCCCCCCc
Q 045261 28 LNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTS 107 (227)
Q Consensus 28 l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~ 107 (227)
+.+.+.|+.++|. +.++..-..++.|+.|.+ + .++++ .+ ..+..|++|++|.++.+ .+.++.+-. -+.++|+
T Consensus 18 l~~vkKLNcwg~~-L~DIsic~kMp~lEVLsL-S-vNkIs-sL--~pl~rCtrLkElYLRkN-~I~sldEL~-YLknlps 89 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDISICEKMPLLEVLSL-S-VNKIS-SL--APLQRCTRLKELYLRKN-CIESLDELE-YLKNLPS 89 (388)
T ss_pred HHHhhhhcccCCC-ccHHHHHHhcccceeEEe-e-ccccc-cc--hhHHHHHHHHHHHHHhc-ccccHHHHH-HHhcCch
Confidence 4456677777774 666665567788888887 3 35554 22 24677888888887765 454443211 0125778
Q ss_pred cceEEEecCCCccccCC--CCCCccCCCCccEEe
Q 045261 108 LVHLNIVEFQKLKNLSS--SSSGFHSLTSLRRLL 139 (227)
Q Consensus 108 L~~L~l~~~~~l~~l~~--~~~~l~~l~~L~~L~ 139 (227)
|+.|.+..++.....+. -...+.-+|+|++|+
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 88888877655544330 001123456666665
No 71
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.65 E-value=0.068 Score=42.86 Aligned_cols=82 Identities=18% Similarity=0.224 Sum_probs=49.6
Q ss_pred CCCCCcceEeecCCCCCcccCCC----CCCCCcceeEeccCcccccccchhccc-ccCCccceEEeccCCCCC-ccCccC
Q 045261 26 HKLNSLQDLDIRECPSIVSFPEE----GFPTNLTSLAIGEDMKMLYKGLVQWGL-HRLTSLRWLLIERCDESE-CFPDGM 99 (227)
Q Consensus 26 ~~l~~L~~L~l~~c~~l~~~~~~----~~l~~L~~L~l~~~~~~l~~~~~~~~~-~~l~~L~~L~l~~~~~l~-~l~~~~ 99 (227)
...+.++.+++.+. .+.++... ..++.|++|++ +|+.+...+- .. ....+|+.|.+.+...-. ......
T Consensus 68 ~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNl--s~N~L~s~I~--~lp~p~~nl~~lVLNgT~L~w~~~~s~l 142 (418)
T KOG2982|consen 68 SSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNL--SCNSLSSDIK--SLPLPLKNLRVLVLNGTGLSWTQSTSSL 142 (418)
T ss_pred HHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeec--cCCcCCCccc--cCcccccceEEEEEcCCCCChhhhhhhh
Confidence 35677888888875 35544332 67899999998 7788863221 12 355688888887742211 111111
Q ss_pred cCCCCCCccceEEEec
Q 045261 100 MGMTLPTSLVHLNIVE 115 (227)
Q Consensus 100 ~~~~~~~~L~~L~l~~ 115 (227)
..+|.+++|+++.
T Consensus 143 ---~~lP~vtelHmS~ 155 (418)
T KOG2982|consen 143 ---DDLPKVTELHMSD 155 (418)
T ss_pred ---hcchhhhhhhhcc
Confidence 1466777777776
No 72
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=90.64 E-value=0.16 Score=24.62 Aligned_cols=18 Identities=28% Similarity=0.497 Sum_probs=14.4
Q ss_pred CCCCcEEeecCCchhhhh
Q 045261 178 PSSLLELTIFDCPKLRKE 195 (227)
Q Consensus 178 ~~~L~~L~l~~c~~l~~~ 195 (227)
+++|+.|++++|++++..
T Consensus 1 c~~L~~L~l~~C~~itD~ 18 (26)
T smart00367 1 CPNLRELDLSGCTNITDE 18 (26)
T ss_pred CCCCCEeCCCCCCCcCHH
Confidence 468889999999888754
No 73
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=85.66 E-value=0.66 Score=36.98 Aligned_cols=135 Identities=16% Similarity=0.169 Sum_probs=78.1
Q ss_pred CCCccEEEeccCCCCCcCCc----ccCCCCCcceEeecCCCCCcccCCC---------------CCCCCcceeEeccCcc
Q 045261 4 PESISSVEIRRCEKLGALPS----DMHKLNSLQDLDIRECPSIVSFPEE---------------GFPTNLTSLAIGEDMK 64 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~----~~~~l~~L~~L~l~~c~~l~~~~~~---------------~~l~~L~~L~l~~~~~ 64 (227)
||.|+..++|++-.-...|+ .+.+-+.|.+|.+++|. +..+... ..-+.|+.+.. +-+
T Consensus 91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vic--grN 167 (388)
T COG5238 91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC--GRN 167 (388)
T ss_pred CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEe--ccc
Confidence 68899999999765555554 33566789999998874 4333211 24467777776 334
Q ss_pred ccccc---chhcccccCCccceEEeccCCCCCccCccC-----cCCCCCCccceEEEecCCCccccCC-CCCCccCCCCc
Q 045261 65 MLYKG---LVQWGLHRLTSLRWLLIERCDESECFPDGM-----MGMTLPTSLVHLNIVEFQKLKNLSS-SSSGFHSLTSL 135 (227)
Q Consensus 65 ~l~~~---~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~-----~~~~~~~~L~~L~l~~~~~l~~l~~-~~~~l~~l~~L 135 (227)
.+... .+...+....+|+.+.+..+ .+.. .+. .+...+.+|+.||++++.....-+. -...+..++.|
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qN-gIrp--egv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~l 244 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQN-GIRP--EGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLL 244 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeec-CcCc--chhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchh
Confidence 44311 11223455578888888875 3332 111 0112567899999998433211100 00223355678
Q ss_pred cEEeecCCC
Q 045261 136 RRLLIQDCP 144 (227)
Q Consensus 136 ~~L~l~~c~ 144 (227)
+.|.+.+|-
T Consensus 245 rEL~lnDCl 253 (388)
T COG5238 245 RELRLNDCL 253 (388)
T ss_pred hhccccchh
Confidence 889888874
No 74
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=85.53 E-value=0.2 Score=40.88 Aligned_cols=111 Identities=17% Similarity=0.140 Sum_probs=69.3
Q ss_pred CCCCccEEEeccCCCCC----cCCcccCCCCCcceEeecCCCCCcc----cCCC-CCCCCcceeEeccCcccccccch--
Q 045261 3 LPESISSVEIRRCEKLG----ALPSDMHKLNSLQDLDIRECPSIVS----FPEE-GFPTNLTSLAIGEDMKMLYKGLV-- 71 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~----~lp~~~~~l~~L~~L~l~~c~~l~~----~~~~-~~l~~L~~L~l~~~~~~l~~~~~-- 71 (227)
..+.|+.+.++.+..-. .+-..+..+++|+.|++.++..-.. +... ..+++|++|++ .+|.--.....
T Consensus 183 ~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l-~dcll~~~Ga~a~ 261 (382)
T KOG1909|consen 183 SHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNL-GDCLLENEGAIAF 261 (382)
T ss_pred hccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecc-cccccccccHHHH
Confidence 45788888888854322 1224568899999999998653221 2222 56778999999 88865542211
Q ss_pred -hcccccCCccceEEeccCCCCCc-----cCccCcCCCCCCccceEEEecCCC
Q 045261 72 -QWGLHRLTSLRWLLIERCDESEC-----FPDGMMGMTLPTSLVHLNIVEFQK 118 (227)
Q Consensus 72 -~~~~~~l~~L~~L~l~~~~~l~~-----l~~~~~~~~~~~~L~~L~l~~~~~ 118 (227)
.-.-...++|+.+.+.+| .++. +...+. ..|.|..|.+.+|..
T Consensus 262 ~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~---ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 262 VDALKESAPSLEVLELAGN-EITRDAALALAACMA---EKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHh---cchhhHHhcCCcccc
Confidence 111134788999999987 4332 111121 368899999988543
No 75
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=81.48 E-value=1.3 Score=21.13 Aligned_cols=20 Identities=40% Similarity=0.575 Sum_probs=12.8
Q ss_pred CCCccEEeecCCCCCccCCCC
Q 045261 132 LTSLRRLLIQDCPNLTSLPKV 152 (227)
Q Consensus 132 l~~L~~L~l~~c~~l~~~~~~ 152 (227)
+++|++|++++ +.++.+|..
T Consensus 1 L~~L~~L~L~~-N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSN-NQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCC-CcCCcCCHH
Confidence 35677777777 466666653
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=81.48 E-value=1.3 Score=21.13 Aligned_cols=20 Identities=40% Similarity=0.575 Sum_probs=12.8
Q ss_pred CCCccEEeecCCCCCccCCCC
Q 045261 132 LTSLRRLLIQDCPNLTSLPKV 152 (227)
Q Consensus 132 l~~L~~L~l~~c~~l~~~~~~ 152 (227)
+++|++|++++ +.++.+|..
T Consensus 1 L~~L~~L~L~~-N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSN-NQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCC-CcCCcCCHH
Confidence 35677777777 466666653
No 77
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=66.87 E-value=4.3 Score=18.86 Aligned_cols=11 Identities=0% Similarity=0.320 Sum_probs=4.7
Q ss_pred CCccEEEeccC
Q 045261 5 ESISSVEIRRC 15 (227)
Q Consensus 5 ~~L~~L~l~~~ 15 (227)
++|+.|++++|
T Consensus 2 ~~L~~L~l~~n 12 (24)
T PF13516_consen 2 PNLETLDLSNN 12 (24)
T ss_dssp TT-SEEE-TSS
T ss_pred CCCCEEEccCC
Confidence 45555555554
No 78
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=63.96 E-value=5.1 Score=19.52 Aligned_cols=18 Identities=44% Similarity=0.689 Sum_probs=11.0
Q ss_pred CCccEEeecCCCCCccCCC
Q 045261 133 TSLRRLLIQDCPNLTSLPK 151 (227)
Q Consensus 133 ~~L~~L~l~~c~~l~~~~~ 151 (227)
++|+.|++++ +.+.++|+
T Consensus 2 ~~L~~L~vs~-N~Lt~LPe 19 (26)
T smart00364 2 PSLKELNVSN-NQLTSLPE 19 (26)
T ss_pred cccceeecCC-CccccCcc
Confidence 3566666666 45666665
No 79
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=44.14 E-value=19 Score=17.42 Aligned_cols=16 Identities=19% Similarity=0.372 Sum_probs=9.1
Q ss_pred CCccEEeecCCCCCccC
Q 045261 133 TSLRRLLIQDCPNLTSL 149 (227)
Q Consensus 133 ~~L~~L~l~~c~~l~~~ 149 (227)
.+|+.|+++. ++++.+
T Consensus 2 ~~L~~L~L~~-NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQ-NKIKKI 17 (26)
T ss_pred CccCEEECCC-Ccccee
Confidence 4566677666 444433
No 80
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=39.74 E-value=65 Score=17.51 Aligned_cols=11 Identities=45% Similarity=0.549 Sum_probs=5.4
Q ss_pred CCCCCcEEeec
Q 045261 177 LPSSLLELTIF 187 (227)
Q Consensus 177 ~~~~L~~L~l~ 187 (227)
+.+++++|.+.
T Consensus 32 lP~sl~~L~fg 42 (44)
T PF05725_consen 32 LPNSLKSLSFG 42 (44)
T ss_pred cCCCceEEEee
Confidence 44455555543
No 81
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=38.50 E-value=23 Score=17.20 Aligned_cols=11 Identities=9% Similarity=0.308 Sum_probs=6.9
Q ss_pred CCccEEEeccC
Q 045261 5 ESISSVEIRRC 15 (227)
Q Consensus 5 ~~L~~L~l~~~ 15 (227)
++|++|+|++|
T Consensus 2 ~~L~~LdL~~N 12 (28)
T smart00368 2 PSLRELDLSNN 12 (28)
T ss_pred CccCEEECCCC
Confidence 45666666664
No 82
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=20.74 E-value=38 Score=27.41 Aligned_cols=13 Identities=31% Similarity=0.230 Sum_probs=9.4
Q ss_pred CCCCcEEeecCCc
Q 045261 178 PSSLLELTIFDCP 190 (227)
Q Consensus 178 ~~~L~~L~l~~c~ 190 (227)
+.+|+.|++.+..
T Consensus 213 ~~~LevLDlqDNt 225 (388)
T COG5238 213 SHSLEVLDLQDNT 225 (388)
T ss_pred hCcceeeeccccc
Confidence 6678888887754
Done!