Query 045261
Match_columns 227
No_of_seqs 132 out of 1170
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 20:15:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045261.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045261hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.8 7.3E-20 2.5E-24 148.4 16.0 177 4-193 103-291 (328)
2 4fcg_A Uncharacterized protein 99.8 8.2E-19 2.8E-23 142.2 17.4 201 4-220 80-289 (328)
3 2xwt_C Thyrotropin receptor; s 99.7 8.1E-17 2.8E-21 124.6 16.6 197 3-218 29-236 (239)
4 3zyj_A Leucine-rich repeat-con 99.7 2.8E-16 9.5E-21 132.1 19.2 175 3-189 62-241 (440)
5 3zyi_A Leucine-rich repeat-con 99.7 4.5E-16 1.5E-20 131.3 19.2 177 3-189 73-252 (452)
6 2o6q_A Variable lymphocyte rec 99.7 1.2E-15 4.2E-20 120.1 19.6 175 3-190 35-216 (270)
7 1ozn_A Reticulon 4 receptor; N 99.7 7E-16 2.4E-20 122.3 18.2 176 3-190 30-212 (285)
8 3rgz_A Protein brassinosteroid 99.7 3.1E-17 1E-21 146.9 10.4 180 4-189 465-714 (768)
9 1ogq_A PGIP-2, polygalacturona 99.7 1.1E-16 3.6E-21 128.9 10.9 82 5-89 76-159 (313)
10 3zyj_A Leucine-rich repeat-con 99.7 1.6E-15 5.3E-20 127.5 17.8 172 5-190 112-290 (440)
11 3zyi_A Leucine-rich repeat-con 99.7 1.4E-15 4.6E-20 128.3 17.1 153 25-190 143-301 (452)
12 1ozn_A Reticulon 4 receptor; N 99.7 1.4E-15 4.8E-20 120.6 16.1 176 3-190 54-236 (285)
13 2xwt_C Thyrotropin receptor; s 99.7 9.4E-16 3.2E-20 118.6 13.6 177 3-192 53-239 (239)
14 2o6q_A Variable lymphocyte rec 99.7 3E-14 1E-18 112.1 21.0 193 6-218 17-215 (270)
15 3rfs_A Internalin B, repeat mo 99.7 7.8E-15 2.7E-19 115.7 17.0 173 4-190 40-216 (272)
16 3rgz_A Protein brassinosteroid 99.7 1.6E-15 5.4E-20 135.8 14.6 131 5-144 418-549 (768)
17 2id5_A Lingo-1, leucine rich r 99.7 4.1E-15 1.4E-19 126.1 16.4 81 4-89 31-114 (477)
18 2ast_B S-phase kinase-associat 99.6 1.2E-17 4E-22 135.4 0.0 179 4-189 92-282 (336)
19 1p9a_G Platelet glycoprotein I 99.6 1.6E-14 5.6E-19 114.9 17.2 174 3-190 29-206 (290)
20 4ay9_X Follicle-stimulating ho 99.6 2.1E-14 7.2E-19 117.2 17.7 178 3-189 28-212 (350)
21 1h6u_A Internalin H; cell adhe 99.6 4.9E-15 1.7E-19 118.9 13.6 167 4-190 62-228 (308)
22 2id5_A Lingo-1, leucine rich r 99.6 3.6E-14 1.2E-18 120.3 19.1 199 3-218 54-258 (477)
23 2z62_A TOLL-like receptor 4, v 99.6 1.7E-14 5.7E-19 113.9 15.9 133 3-149 26-164 (276)
24 3t6q_A CD180 antigen; protein- 99.6 3.1E-14 1.1E-18 124.0 19.0 175 4-190 277-460 (606)
25 2z66_A Variable lymphocyte rec 99.6 7.7E-15 2.6E-19 117.4 13.6 173 5-190 78-259 (306)
26 2z62_A TOLL-like receptor 4, v 99.6 1.1E-14 3.8E-19 114.9 14.0 171 4-188 51-233 (276)
27 1ogq_A PGIP-2, polygalacturona 99.6 7.2E-16 2.5E-20 124.0 7.3 177 4-190 100-279 (313)
28 1p9a_G Platelet glycoprotein I 99.6 1E-13 3.5E-18 110.3 19.5 169 4-190 9-183 (290)
29 3m19_A Variable lymphocyte rec 99.6 8.7E-14 3E-18 108.3 18.5 170 6-190 15-190 (251)
30 4fmz_A Internalin; leucine ric 99.6 2.1E-14 7.2E-19 116.7 15.6 58 4-65 87-144 (347)
31 4fmz_A Internalin; leucine ric 99.6 1.3E-14 4.3E-19 118.1 14.0 173 3-190 108-298 (347)
32 3o6n_A APL1; leucine-rich repe 99.6 2.5E-14 8.6E-19 118.2 15.6 81 4-89 92-175 (390)
33 2z80_A TOLL-like receptor 2, v 99.6 8.7E-15 3E-19 119.5 12.6 175 3-190 50-233 (353)
34 4eco_A Uncharacterized protein 99.6 7.9E-15 2.7E-19 128.7 12.6 173 4-189 205-412 (636)
35 3m19_A Variable lymphocyte rec 99.6 7.6E-14 2.6E-18 108.7 16.8 155 3-168 33-191 (251)
36 2z66_A Variable lymphocyte rec 99.6 2.6E-14 8.9E-19 114.3 14.1 175 3-190 26-234 (306)
37 3oja_B Anopheles plasmodium-re 99.6 3.1E-14 1E-18 124.1 15.6 81 4-89 98-181 (597)
38 2z80_A TOLL-like receptor 2, v 99.6 1.8E-14 6.2E-19 117.6 13.1 150 4-166 75-232 (353)
39 3t6q_A CD180 antigen; protein- 99.6 1.5E-13 5.2E-18 119.6 19.7 173 6-190 255-436 (606)
40 1h6u_A Internalin H; cell adhe 99.6 1.8E-14 6.3E-19 115.6 12.7 167 4-190 40-206 (308)
41 4ezg_A Putative uncharacterize 99.6 9.3E-15 3.2E-19 109.8 10.3 151 26-190 41-192 (197)
42 1xku_A Decorin; proteoglycan, 99.6 9.4E-14 3.2E-18 112.3 16.8 171 4-190 75-274 (330)
43 4ecn_A Leucine-rich repeat pro 99.6 2.3E-14 7.8E-19 129.2 14.1 174 4-190 447-655 (876)
44 1h6t_A Internalin B; cell adhe 99.6 1.8E-14 6.2E-19 114.7 12.0 167 4-190 45-211 (291)
45 3v47_A TOLL-like receptor 5B a 99.6 1.2E-13 4.2E-18 116.1 17.6 130 3-143 28-164 (455)
46 3rfs_A Internalin B, repeat mo 99.6 1.2E-13 4.2E-18 108.7 16.4 167 3-188 61-231 (272)
47 2z81_A CD282 antigen, TOLL-lik 99.6 6.5E-14 2.2E-18 120.5 15.7 173 4-190 309-508 (549)
48 4eco_A Uncharacterized protein 99.6 6.6E-14 2.3E-18 122.9 15.8 103 80-190 489-598 (636)
49 2z81_A CD282 antigen, TOLL-lik 99.6 1E-13 3.6E-18 119.2 16.6 131 3-144 24-159 (549)
50 1wwl_A Monocyte differentiatio 99.6 2.4E-14 8.3E-19 115.0 11.3 196 4-219 94-307 (312)
51 3o6n_A APL1; leucine-rich repe 99.6 2E-13 7E-18 112.8 16.9 127 5-142 45-174 (390)
52 1wwl_A Monocyte differentiatio 99.6 1.9E-14 6.5E-19 115.6 10.3 175 3-190 119-307 (312)
53 3vq2_A TLR4, TOLL-like recepto 99.5 8.1E-14 2.8E-18 121.3 14.9 201 4-219 306-532 (606)
54 3o53_A Protein LRIM1, AGAP0063 99.5 2E-14 6.8E-19 115.7 10.0 198 3-220 32-249 (317)
55 3v47_A TOLL-like receptor 5B a 99.5 1.7E-13 5.9E-18 115.2 16.2 61 127-189 293-357 (455)
56 1xku_A Decorin; proteoglycan, 99.5 5.4E-13 1.8E-17 107.8 18.3 172 3-189 50-226 (330)
57 3oja_B Anopheles plasmodium-re 99.5 1.7E-13 5.7E-18 119.4 16.2 103 4-115 74-180 (597)
58 4ay9_X Follicle-stimulating ho 99.5 1.7E-13 5.9E-18 111.8 14.8 174 4-188 53-255 (350)
59 3j0a_A TOLL-like receptor 5; m 99.5 2.9E-13 9.9E-18 122.3 17.6 178 3-189 22-214 (844)
60 3vq2_A TLR4, TOLL-like recepto 99.5 6.2E-14 2.1E-18 122.1 12.5 130 4-142 349-482 (606)
61 2z63_A TOLL-like receptor 4, v 99.5 4.8E-14 1.6E-18 121.8 11.5 175 4-190 346-529 (570)
62 1m9s_A Internalin B; cell inva 99.5 4.4E-14 1.5E-18 123.0 11.2 167 4-190 42-208 (605)
63 4ecn_A Leucine-rich repeat pro 99.5 4E-14 1.4E-18 127.7 11.0 156 3-171 489-659 (876)
64 4glp_A Monocyte differentiatio 99.5 6.9E-14 2.4E-18 112.2 11.0 197 5-219 91-305 (310)
65 4ezg_A Putative uncharacterize 99.5 6E-14 2.1E-18 105.3 9.7 148 5-167 44-192 (197)
66 3bz5_A Internalin-J, INLJ; leu 99.5 1.3E-12 4.5E-17 110.3 18.9 160 4-188 41-200 (457)
67 1ziw_A TOLL-like receptor 3; i 99.5 5.5E-13 1.9E-17 117.6 17.3 178 5-189 381-594 (680)
68 2ft3_A Biglycan; proteoglycan, 99.5 2.8E-13 9.4E-18 109.6 14.2 177 3-190 76-275 (332)
69 2ast_B S-phase kinase-associat 99.5 1.9E-15 6.5E-20 122.3 1.4 199 5-218 70-282 (336)
70 2ft3_A Biglycan; proteoglycan, 99.5 8.8E-13 3E-17 106.7 17.1 84 6-97 34-119 (332)
71 1o6v_A Internalin A; bacterial 99.5 3E-13 1E-17 114.4 14.7 144 4-166 176-319 (466)
72 1o6v_A Internalin A; bacterial 99.5 3.3E-13 1.1E-17 114.1 14.8 166 4-189 198-363 (466)
73 3bz5_A Internalin-J, INLJ; leu 99.5 3.4E-13 1.2E-17 113.9 14.5 52 4-59 126-177 (457)
74 3oja_A Leucine-rich immune mol 99.5 8.7E-14 3E-18 118.4 10.9 171 4-189 33-224 (487)
75 1ziw_A TOLL-like receptor 3; i 99.5 1.6E-12 5.4E-17 114.7 19.1 174 4-189 352-570 (680)
76 3e6j_A Variable lymphocyte rec 99.5 4.5E-13 1.5E-17 102.9 13.5 146 8-168 22-171 (229)
77 2z7x_B TOLL-like receptor 1, v 99.5 5.6E-13 1.9E-17 114.1 15.1 152 27-190 322-479 (520)
78 2o6s_A Variable lymphocyte rec 99.5 4.7E-13 1.6E-17 101.1 12.3 160 9-188 11-174 (208)
79 3g06_A SSPH2 (leucine-rich rep 99.5 2.6E-12 8.8E-17 112.2 18.3 75 133-219 221-295 (622)
80 1xeu_A Internalin C; cellular 99.5 6.9E-14 2.4E-18 109.8 6.9 160 9-189 23-182 (263)
81 2z63_A TOLL-like receptor 4, v 99.5 6.9E-13 2.4E-17 114.5 13.7 177 26-219 344-529 (570)
82 1jl5_A Outer protein YOPM; leu 99.5 5E-12 1.7E-16 106.7 18.0 157 5-189 131-287 (454)
83 2v9t_B SLIT homolog 2 protein 99.5 3.2E-12 1.1E-16 97.6 15.3 144 9-166 15-162 (220)
84 3e6j_A Variable lymphocyte rec 99.4 3.7E-12 1.3E-16 97.8 15.4 147 31-190 21-170 (229)
85 3j0a_A TOLL-like receptor 5; m 99.4 4.4E-12 1.5E-16 114.6 17.9 108 3-117 46-159 (844)
86 2ell_A Acidic leucine-rich nuc 99.4 5.4E-13 1.8E-17 97.4 9.5 137 2-151 21-164 (168)
87 3o53_A Protein LRIM1, AGAP0063 99.4 4.1E-13 1.4E-17 108.0 9.4 174 3-192 56-250 (317)
88 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 6.3E-12 2.2E-16 108.6 17.5 153 26-190 350-508 (562)
89 1h6t_A Internalin B; cell adhe 99.4 1E-12 3.6E-17 104.5 11.6 146 3-167 66-211 (291)
90 4glp_A Monocyte differentiatio 99.4 1.2E-12 4E-17 105.0 11.8 175 3-190 115-305 (310)
91 1jl5_A Outer protein YOPM; leu 99.4 1.1E-11 3.7E-16 104.6 17.9 158 4-189 90-247 (454)
92 2z7x_B TOLL-like receptor 1, v 99.4 2.1E-12 7.3E-17 110.4 13.6 153 3-168 322-480 (520)
93 3oja_A Leucine-rich immune mol 99.4 1E-12 3.5E-17 111.8 10.4 174 3-192 56-250 (487)
94 3cvr_A Invasion plasmid antige 99.4 8.1E-12 2.8E-16 107.9 16.0 156 6-190 60-241 (571)
95 3cvr_A Invasion plasmid antige 99.4 1.3E-11 4.6E-16 106.6 17.3 131 30-189 60-190 (571)
96 2o6s_A Variable lymphocyte rec 99.4 2.1E-11 7.2E-16 92.0 16.3 154 3-173 26-182 (208)
97 1m9s_A Internalin B; cell inva 99.4 4E-12 1.4E-16 110.7 13.6 147 3-168 63-209 (605)
98 3g06_A SSPH2 (leucine-rich rep 99.4 3E-11 1E-15 105.5 18.3 91 4-115 60-150 (622)
99 3a79_B TLR6, VLRB.59, TOLL-lik 99.4 7.2E-12 2.4E-16 108.3 14.3 153 3-168 351-509 (562)
100 1xeu_A Internalin C; cellular 99.4 4.2E-12 1.4E-16 99.6 11.7 144 4-167 40-183 (263)
101 2v9t_B SLIT homolog 2 protein 99.4 1.2E-11 4E-16 94.5 13.7 130 3-144 30-163 (220)
102 2xot_A Amphoterin-induced prot 99.4 4.4E-12 1.5E-16 103.9 12.0 168 8-190 21-200 (361)
103 2je0_A Acidic leucine-rich nuc 99.4 1.4E-12 4.8E-17 93.3 7.3 129 3-142 15-149 (149)
104 2xot_A Amphoterin-induced prot 99.3 7.3E-12 2.5E-16 102.6 11.5 153 2-167 36-200 (361)
105 2v70_A SLIT-2, SLIT homolog 2 99.3 2.5E-11 8.4E-16 92.6 12.8 147 8-168 14-165 (220)
106 2v70_A SLIT-2, SLIT homolog 2 99.3 5.6E-11 1.9E-15 90.6 14.3 146 32-190 14-164 (220)
107 4g8a_A TOLL-like receptor 4; l 99.3 6.1E-11 2.1E-15 103.2 13.9 154 25-189 416-577 (635)
108 4g8a_A TOLL-like receptor 4; l 99.3 9.7E-11 3.3E-15 102.0 14.1 153 4-167 419-578 (635)
109 1a9n_A U2A', U2A'; complex (nu 99.2 1.5E-11 5.1E-16 90.5 7.5 126 4-142 18-149 (176)
110 2o6r_A Variable lymphocyte rec 99.2 9E-10 3.1E-14 80.9 13.1 85 75-166 48-134 (177)
111 2wfh_A SLIT homolog 2 protein 99.2 5.3E-10 1.8E-14 83.5 12.0 84 75-165 50-135 (193)
112 1w8a_A SLIT protein; signaling 99.1 8.6E-10 2.9E-14 82.2 12.3 123 8-144 11-137 (192)
113 1dce_A Protein (RAB geranylger 99.1 1.7E-13 5.7E-18 118.7 -9.3 174 3-190 347-544 (567)
114 2ell_A Acidic leucine-rich nuc 99.1 2.2E-10 7.5E-15 83.4 8.4 105 75-190 45-158 (168)
115 1a9n_A U2A', U2A'; complex (nu 99.1 9E-11 3.1E-15 86.3 6.2 135 25-192 15-153 (176)
116 2ca6_A RAN GTPase-activating p 99.1 1.8E-12 6.3E-17 106.9 -3.4 58 4-63 59-132 (386)
117 2wfh_A SLIT homolog 2 protein 99.1 1.1E-09 3.8E-14 81.7 11.2 124 8-144 13-137 (193)
118 2o6r_A Variable lymphocyte rec 99.0 4.9E-09 1.7E-13 76.9 12.9 125 7-144 9-135 (177)
119 4b8c_D Glucose-repressible alc 99.0 3.1E-10 1E-14 101.0 7.3 109 22-143 217-326 (727)
120 2je0_A Acidic leucine-rich nuc 99.0 1.9E-10 6.6E-15 82.0 4.7 111 28-151 16-130 (149)
121 2p1m_B Transport inhibitor res 99.0 6.1E-12 2.1E-16 109.0 -3.9 128 4-141 104-243 (594)
122 1dce_A Protein (RAB geranylger 99.0 1.2E-09 4E-14 94.6 9.6 106 31-151 443-550 (567)
123 2ca6_A RAN GTPase-activating p 99.0 3.1E-11 1.1E-15 99.5 -0.4 84 4-89 31-132 (386)
124 2p1m_B Transport inhibitor res 99.0 2.8E-11 9.6E-16 104.9 -1.2 135 4-147 65-225 (594)
125 4b8c_D Glucose-repressible alc 99.0 7.6E-10 2.6E-14 98.5 7.7 151 5-169 173-329 (727)
126 3goz_A Leucine-rich repeat-con 99.0 3E-11 1E-15 98.9 -1.3 108 3-115 20-147 (362)
127 3goz_A Leucine-rich repeat-con 99.0 2E-11 6.9E-16 99.9 -2.6 173 6-190 52-264 (362)
128 3ogk_B Coronatine-insensitive 99.0 2.4E-11 8.2E-16 105.3 -2.6 33 7-39 140-174 (592)
129 1w8a_A SLIT protein; signaling 99.0 1.3E-08 4.3E-13 75.8 12.6 124 32-168 11-138 (192)
130 3sb4_A Hypothetical leucine ri 98.9 7.4E-09 2.5E-13 83.5 11.2 173 4-188 48-306 (329)
131 3ogk_B Coronatine-insensitive 98.9 5.2E-11 1.8E-15 103.2 -2.2 84 4-89 72-174 (592)
132 1z7x_W Ribonuclease inhibitor; 98.8 6.5E-11 2.2E-15 99.5 -5.7 130 4-144 27-181 (461)
133 3sb4_A Hypothetical leucine ri 98.8 4.8E-08 1.6E-12 78.7 11.4 168 4-185 100-327 (329)
134 3g39_A Variable lymphocyte rec 98.8 5E-08 1.7E-12 71.1 10.3 102 31-143 11-112 (170)
135 2r9u_A Variable lymphocyte rec 98.8 6E-08 2.1E-12 71.0 10.5 101 32-143 15-115 (174)
136 1z7x_W Ribonuclease inhibitor; 98.8 8.1E-11 2.8E-15 99.0 -5.8 175 5-190 199-409 (461)
137 3g39_A Variable lymphocyte rec 98.8 7.2E-08 2.5E-12 70.3 10.3 101 6-116 10-112 (170)
138 1ds9_A Outer arm dynein; leuci 98.8 1.1E-11 3.6E-16 93.0 -10.7 112 19-143 38-150 (198)
139 2r9u_A Variable lymphocyte rec 98.7 9.2E-08 3.2E-12 70.0 10.4 104 8-123 15-121 (174)
140 1ds9_A Outer arm dynein; leuci 98.7 1.7E-10 5.9E-15 86.3 -6.3 124 4-139 47-180 (198)
141 2ifg_A High affinity nerve gro 98.6 1.3E-07 4.3E-12 76.7 9.5 100 9-116 12-113 (347)
142 3e4g_A ATP synthase subunit S, 98.6 1.7E-08 5.7E-13 73.7 3.3 88 29-121 61-154 (176)
143 3e4g_A ATP synthase subunit S, 98.6 9.3E-09 3.2E-13 75.1 1.4 87 105-194 60-154 (176)
144 4fdw_A Leucine rich hypothetic 98.6 5E-06 1.7E-10 68.8 17.4 120 7-142 159-280 (401)
145 4fdw_A Leucine rich hypothetic 98.6 2.4E-06 8.1E-11 70.8 15.3 167 3-189 178-355 (401)
146 2ifg_A High affinity nerve gro 98.4 1.1E-06 3.9E-11 71.0 10.0 102 33-144 12-114 (347)
147 2ra8_A Uncharacterized protein 98.4 2.3E-07 7.9E-12 75.8 4.7 129 50-190 170-318 (362)
148 2ra8_A Uncharacterized protein 98.2 5.2E-07 1.8E-11 73.7 3.1 158 4-167 138-318 (362)
149 3un9_A NLR family member X1; l 97.9 1E-07 3.5E-12 78.3 -6.4 151 4-167 71-250 (372)
150 3un9_A NLR family member X1; l 97.7 7E-06 2.4E-10 67.3 0.5 153 28-190 71-250 (372)
151 3rw6_A Nuclear RNA export fact 97.0 0.00026 9E-09 55.1 2.3 79 26-113 167-258 (267)
152 4h09_A Hypothetical leucine ri 96.9 0.037 1.3E-06 44.8 14.6 33 105-140 285-317 (379)
153 4h09_A Hypothetical leucine ri 96.9 0.012 4E-07 47.8 11.4 114 24-152 235-350 (379)
154 4fs7_A Uncharacterized protein 96.8 0.026 9E-07 46.1 13.1 76 104-187 295-374 (394)
155 1io0_A Tropomodulin; LRR prote 96.8 0.00037 1.3E-08 51.1 1.2 62 26-89 33-103 (185)
156 4gt6_A Cell surface protein; l 96.7 0.011 3.8E-07 48.4 10.1 110 42-165 253-366 (394)
157 1io0_A Tropomodulin; LRR prote 96.6 0.00044 1.5E-08 50.7 0.6 105 4-115 35-160 (185)
158 3rw6_A Nuclear RNA export fact 96.4 0.0014 4.7E-08 51.1 2.6 43 105-149 169-211 (267)
159 4gt6_A Cell surface protein; l 96.3 0.023 8E-07 46.4 9.4 107 23-143 259-367 (394)
160 4fs7_A Uncharacterized protein 96.1 0.062 2.1E-06 43.9 10.8 142 4-165 229-375 (394)
161 3rfe_A Platelet glycoprotein I 95.2 0.037 1.3E-06 37.9 5.4 53 83-144 12-66 (130)
162 3rfe_A Platelet glycoprotein I 92.2 0.18 6.1E-06 34.4 4.3 49 9-62 12-64 (130)
163 1pgv_A TMD-1, tropomodulin TMD 77.8 1.1 3.6E-05 33.0 2.0 108 26-142 38-166 (197)
164 2lz0_A Uncharacterized protein 41.5 58 0.002 20.5 4.9 34 105-142 19-52 (100)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.84 E-value=7.3e-20 Score=148.42 Aligned_cols=177 Identities=25% Similarity=0.387 Sum_probs=98.0
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhccc-------
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGL------- 75 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~------- 75 (227)
+++|++|++++|. +..+|..++++++|++|+++++. +..+|.. ..+++|++|++ ++|+... .++. .+
T Consensus 103 l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~L-~~n~~~~-~~p~-~~~~~~~~~ 177 (328)
T 4fcg_A 103 LSHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNP-LRALPASIASLNRLRELSI-RACPELT-ELPE-PLASTDASG 177 (328)
T ss_dssp GTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCC-CCCCCGGGGGCTTCCEEEE-EEETTCC-CCCS-CSEEEC-CC
T ss_pred CCCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCc-cccCcHHHhcCcCCCEEEC-CCCCCcc-ccCh-hHhhccchh
Confidence 3455555555543 33555555555566666665543 3344443 45556666666 5544332 2221 12
Q ss_pred --ccCCccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC-
Q 045261 76 --HRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV- 152 (227)
Q Consensus 76 --~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~- 152 (227)
+.+++|++|+++++ .++.+|..+. .+++|++|++++ +.+..+| ..+..+++|++|++++|+..+.+|..
T Consensus 178 ~~~~l~~L~~L~L~~n-~l~~lp~~l~---~l~~L~~L~L~~-N~l~~l~---~~l~~l~~L~~L~Ls~n~~~~~~p~~~ 249 (328)
T 4fcg_A 178 EHQGLVNLQSLRLEWT-GIRSLPASIA---NLQNLKSLKIRN-SPLSALG---PAIHHLPKLEELDLRGCTALRNYPPIF 249 (328)
T ss_dssp CEEESTTCCEEEEEEE-CCCCCCGGGG---GCTTCCEEEEES-SCCCCCC---GGGGGCTTCCEEECTTCTTCCBCCCCT
T ss_pred hhccCCCCCEEECcCC-CcCcchHhhc---CCCCCCEEEccC-CCCCcCc---hhhccCCCCCEEECcCCcchhhhHHHh
Confidence 23556666666655 4445555543 456666666666 3444555 45666666666666666666655543
Q ss_pred CCCCccceeeecCCCCCCCCCCC-CCCCCCcEEeecCCchhh
Q 045261 153 GLPSSLLDLCIFNCPNLTSLPKV-GLPSSLLELTIFDCPKLR 193 (227)
Q Consensus 153 ~~~~~L~~l~i~~c~~l~~~~~~-~~~~~L~~L~l~~c~~l~ 193 (227)
..+++|++|++++|...+.+|.. ..+++|++|++++|+.+.
T Consensus 250 ~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~ 291 (328)
T 4fcg_A 250 GGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLS 291 (328)
T ss_dssp TCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCC
T ss_pred cCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchh
Confidence 34556666666666666666642 345666777777666444
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.82 E-value=8.2e-19 Score=142.23 Aligned_cols=201 Identities=20% Similarity=0.317 Sum_probs=161.6
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCccc
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLR 82 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~ 82 (227)
.++++.|+++++ .++.+|..+..+++|++|+++++. +..+|.. ..+++|++|++ +++ .+. .+ +..+..+++|+
T Consensus 80 ~~~l~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~L-s~n-~l~-~l-p~~l~~l~~L~ 153 (328)
T 4fcg_A 80 QPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAG-LMELPDTMQQFAGLETLTL-ARN-PLR-AL-PASIASLNRLR 153 (328)
T ss_dssp STTCCEEEEESS-CCSSCCSCGGGGTTCSEEEEESSC-CCCCCSCGGGGTTCSEEEE-ESC-CCC-CC-CGGGGGCTTCC
T ss_pred ccceeEEEccCC-CchhcChhhhhCCCCCEEECCCCC-ccchhHHHhccCCCCEEEC-CCC-ccc-cC-cHHHhcCcCCC
Confidence 478999999995 577999999999999999999975 6678876 78999999999 774 554 44 44689999999
Q ss_pred eEEeccCCCCCccCccCcC------CCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC-CCC
Q 045261 83 WLLIERCDESECFPDGMMG------MTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV-GLP 155 (227)
Q Consensus 83 ~L~l~~~~~l~~l~~~~~~------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~ 155 (227)
+|++++|.....+|..+.. ...+++|++|++++ +.+..+| ..+..+++|++|++++| .+..++.. ...
T Consensus 154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~-n~l~~lp---~~l~~l~~L~~L~L~~N-~l~~l~~~l~~l 228 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEW-TGIRSLP---ASIANLQNLKSLKIRNS-PLSALGPAIHHL 228 (328)
T ss_dssp EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEE-ECCCCCC---GGGGGCTTCCEEEEESS-CCCCCCGGGGGC
T ss_pred EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcC-CCcCcch---HhhcCCCCCCEEEccCC-CCCcCchhhccC
Confidence 9999998888888886631 01288999999999 4777888 78999999999999994 57777654 457
Q ss_pred CccceeeecCCCCCCCCCCC-CCCCCCcEEeecCCchhhhhhcccCCCCcccccccceEEeccCCc
Q 045261 156 SSLLDLCIFNCPNLTSLPKV-GLPSSLLELTIFDCPKLRKECKRDKGKGWSKIANIPMFLIDDTDS 220 (227)
Q Consensus 156 ~~L~~l~i~~c~~l~~~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 220 (227)
++|++|++++|...+.+|.. +.+++|++|++++|..+.. ....+..+.++..+.+.++..
T Consensus 229 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~-----~p~~~~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 229 PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT-----LPLDIHRLTQLEKLDLRGCVN 289 (328)
T ss_dssp TTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCB-----CCTTGGGCTTCCEEECTTCTT
T ss_pred CCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhh-----cchhhhcCCCCCEEeCCCCCc
Confidence 89999999999999988864 5689999999999976542 233455666777777776543
No 3
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.75 E-value=8.1e-17 Score=124.60 Aligned_cols=197 Identities=17% Similarity=0.188 Sum_probs=152.9
Q ss_pred CCCCccEEEeccCCCCCcCCc-ccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCC
Q 045261 3 LPESISSVEIRRCEKLGALPS-DMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLT 79 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~ 79 (227)
+.++|+.|+++++ .++.+|. .+.++++|++|+++++..+..++.. ..+++|++|++ ++|+.++ .+.+..+..++
T Consensus 29 ~~~~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l-~~~n~l~-~i~~~~f~~l~ 105 (239)
T 2xwt_C 29 LPPSTQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEI-RNTRNLT-YIDPDALKELP 105 (239)
T ss_dssp CCTTCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEE-EEETTCC-EECTTSEECCT
T ss_pred CCCcccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEEC-CCCCCee-EcCHHHhCCCC
Confidence 3568999999996 4666664 7889999999999998658888764 68899999999 8778887 55666788999
Q ss_pred ccceEEeccCCCCCccCccCcCCCCCCccc---eEEEecCCCccccCCCCCCccCCCCcc-EEeecCCCCCccCCCCC-C
Q 045261 80 SLRWLLIERCDESECFPDGMMGMTLPTSLV---HLNIVEFQKLKNLSSSSSGFHSLTSLR-RLLIQDCPNLTSLPKVG-L 154 (227)
Q Consensus 80 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~---~L~l~~~~~l~~l~~~~~~l~~l~~L~-~L~l~~c~~l~~~~~~~-~ 154 (227)
+|++|+++++ .++.+|. +. .+++|+ +|+++++..+..++ ...+..+++|+ +|++++ +.+..+|... .
T Consensus 106 ~L~~L~l~~n-~l~~lp~-~~---~l~~L~~L~~L~l~~N~~l~~i~--~~~~~~l~~L~~~L~l~~-n~l~~i~~~~~~ 177 (239)
T 2xwt_C 106 LLKFLGIFNT-GLKMFPD-LT---KVYSTDIFFILEITDNPYMTSIP--VNAFQGLCNETLTLKLYN-NGFTSVQGYAFN 177 (239)
T ss_dssp TCCEEEEEEE-CCCSCCC-CT---TCCBCCSEEEEEEESCTTCCEEC--TTTTTTTBSSEEEEECCS-CCCCEECTTTTT
T ss_pred CCCEEeCCCC-CCccccc-cc---cccccccccEEECCCCcchhhcC--cccccchhcceeEEEcCC-CCCcccCHhhcC
Confidence 9999999997 6777887 43 567777 99999965888887 46688999999 999998 5677887652 2
Q ss_pred CCccceeeecCCCCCCCCCCCC--CC-CCCcEEeecCCchhhhhhcccCCCCcccccccceEEeccC
Q 045261 155 PSSLLDLCIFNCPNLTSLPKVG--LP-SSLLELTIFDCPKLRKECKRDKGKGWSKIANIPMFLIDDT 218 (227)
Q Consensus 155 ~~~L~~l~i~~c~~l~~~~~~~--~~-~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 218 (227)
.++|++|++++++.++.++... .+ ++|++|+++++. ++. .+. ..+.+++.+++.+.
T Consensus 178 ~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~-l~~-----l~~--~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 178 GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTS-VTA-----LPS--KGLEHLKELIARNT 236 (239)
T ss_dssp TCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCC-CCC-----CCC--TTCTTCSEEECTTC
T ss_pred CCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCc-ccc-----CCh--hHhccCceeeccCc
Confidence 3689999999987788887643 35 899999999854 221 111 14667777776654
No 4
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.73 E-value=2.8e-16 Score=132.10 Aligned_cols=175 Identities=19% Similarity=0.220 Sum_probs=122.4
Q ss_pred CCCCccEEEeccCCCCCcC-CcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCC
Q 045261 3 LPESISSVEIRRCEKLGAL-PSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLT 79 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~ 79 (227)
+.++++.|+++++. +..+ +..+.++++|++|+++++. +..++.. ..+++|++|++ ++ +.++ .+++..+..++
T Consensus 62 ~~~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L-~~-n~l~-~~~~~~~~~l~ 136 (440)
T 3zyj_A 62 ISTNTRLLNLHENQ-IQIIKVNSFKHLRHLEILQLSRNH-IRTIEIGAFNGLANLNTLEL-FD-NRLT-TIPNGAFVYLS 136 (440)
T ss_dssp CCTTCSEEECCSCC-CCEECTTTTSSCSSCCEEECCSSC-CCEECGGGGTTCSSCCEEEC-CS-SCCS-SCCTTTSCSCS
T ss_pred CCCCCcEEEccCCc-CCeeCHHHhhCCCCCCEEECCCCc-CCccChhhccCCccCCEEEC-CC-CcCC-eeCHhHhhccc
Confidence 45778889998864 4444 4678888899999998864 6666543 67888899988 66 4555 45555678888
Q ss_pred ccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccc
Q 045261 80 SLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLL 159 (227)
Q Consensus 80 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~ 159 (227)
+|++|+++++ .+..++.... ..+++|++|++++++.+..++ ...+.++++|++|++++ +.+..+|.....++|+
T Consensus 137 ~L~~L~L~~N-~i~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~--~~~~~~l~~L~~L~L~~-n~l~~~~~~~~l~~L~ 210 (440)
T 3zyj_A 137 KLKELWLRNN-PIESIPSYAF--NRIPSLRRLDLGELKRLSYIS--EGAFEGLSNLRYLNLAM-CNLREIPNLTPLIKLD 210 (440)
T ss_dssp SCCEEECCSC-CCCEECTTTT--TTCTTCCEEECCCCTTCCEEC--TTTTTTCSSCCEEECTT-SCCSSCCCCTTCSSCC
T ss_pred cCceeeCCCC-cccccCHHHh--hhCcccCEeCCCCCCCcceeC--cchhhcccccCeecCCC-CcCccccccCCCcccC
Confidence 8888888886 5666665332 267888888888888887777 45677888888888888 4677777656667777
Q ss_pred eeeecCCCCCCCCCCC--CCCCCCcEEeecCC
Q 045261 160 DLCIFNCPNLTSLPKV--GLPSSLLELTIFDC 189 (227)
Q Consensus 160 ~l~i~~c~~l~~~~~~--~~~~~L~~L~l~~c 189 (227)
+|+++++. ++.++.. ..+++|++|++.++
T Consensus 211 ~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n 241 (440)
T 3zyj_A 211 ELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQS 241 (440)
T ss_dssp EEECTTSC-CCEECTTTTTTCTTCCEEECTTC
T ss_pred EEECCCCc-cCccChhhhccCccCCEEECCCC
Confidence 78777763 3333221 23456666666554
No 5
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.72 E-value=4.5e-16 Score=131.28 Aligned_cols=177 Identities=20% Similarity=0.209 Sum_probs=126.4
Q ss_pred CCCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCc
Q 045261 3 LPESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTS 80 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~ 80 (227)
+.++++.|+++++....-.+..+.++++|++|+++++. +..++.. ..+++|+.|++ ++ +.+. .+++..+..+++
T Consensus 73 ~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L-~~-n~l~-~~~~~~~~~l~~ 148 (452)
T 3zyi_A 73 IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-IRQIEVGAFNGLASLNTLEL-FD-NWLT-VIPSGAFEYLSK 148 (452)
T ss_dssp CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEEC-CS-SCCS-BCCTTTSSSCTT
T ss_pred CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCc-cCCcChhhccCcccCCEEEC-CC-CcCC-ccChhhhcccCC
Confidence 56789999999965433346778999999999999874 6666543 67899999999 66 4555 555556888999
Q ss_pred cceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccce
Q 045261 81 LRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLD 160 (227)
Q Consensus 81 L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~ 160 (227)
|++|+++++ .+..++.... ..+++|+.|++++|+.+..++ ...+..+++|++|++++ +.+..+|.....++|++
T Consensus 149 L~~L~L~~N-~l~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~--~~~~~~l~~L~~L~L~~-n~l~~~~~~~~l~~L~~ 222 (452)
T 3zyi_A 149 LRELWLRNN-PIESIPSYAF--NRVPSLMRLDLGELKKLEYIS--EGAFEGLFNLKYLNLGM-CNIKDMPNLTPLVGLEE 222 (452)
T ss_dssp CCEEECCSC-CCCEECTTTT--TTCTTCCEEECCCCTTCCEEC--TTTTTTCTTCCEEECTT-SCCSSCCCCTTCTTCCE
T ss_pred CCEEECCCC-CcceeCHhHH--hcCCcccEEeCCCCCCccccC--hhhccCCCCCCEEECCC-CcccccccccccccccE
Confidence 999999987 6777765332 267899999999888888887 45678888888888888 46777776556677777
Q ss_pred eeecCCCCCCCCCC-CCCCCCCcEEeecCC
Q 045261 161 LCIFNCPNLTSLPK-VGLPSSLLELTIFDC 189 (227)
Q Consensus 161 l~i~~c~~l~~~~~-~~~~~~L~~L~l~~c 189 (227)
|+++++..-+..+. ...+++|++|+++++
T Consensus 223 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n 252 (452)
T 3zyi_A 223 LEMSGNHFPEIRPGSFHGLSSLKKLWVMNS 252 (452)
T ss_dssp EECTTSCCSEECGGGGTTCTTCCEEECTTS
T ss_pred EECcCCcCcccCcccccCccCCCEEEeCCC
Confidence 77777543222121 123455555555544
No 6
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.71 E-value=1.2e-15 Score=120.08 Aligned_cols=175 Identities=23% Similarity=0.336 Sum_probs=136.5
Q ss_pred CCCCccEEEeccCCCCCcCC-cccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCC
Q 045261 3 LPESISSVEIRRCEKLGALP-SDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLT 79 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~ 79 (227)
+.++++.|+++++. ++.++ ..+.++++|++|+++++. +..++.. ..+++|++|++ ++ +.+. .+++..+..++
T Consensus 35 ~~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l-~~-n~l~-~~~~~~~~~l~ 109 (270)
T 2o6q_A 35 IPADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWV-TD-NKLQ-ALPIGVFDQLV 109 (270)
T ss_dssp CCTTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEEC-CS-SCCC-CCCTTTTTTCS
T ss_pred CCCCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEEC-CC-CcCC-cCCHhHccccc
Confidence 45689999999964 66666 478999999999999864 6777765 56899999999 76 4554 45555678899
Q ss_pred ccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCCc
Q 045261 80 SLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPSS 157 (227)
Q Consensus 80 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~ 157 (227)
+|++|+++++ .+..++.... ..+++|++|++++ +.+..++ ...+..+++|++|++++ +.+..++.. ...++
T Consensus 110 ~L~~L~l~~n-~l~~~~~~~~--~~l~~L~~L~Ls~-n~l~~~~--~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~ 182 (270)
T 2o6q_A 110 NLAELRLDRN-QLKSLPPRVF--DSLTKLTYLSLGY-NELQSLP--KGVFDKLTSLKELRLYN-NQLKRVPEGAFDKLTE 182 (270)
T ss_dssp SCCEEECCSS-CCCCCCTTTT--TTCTTCCEEECCS-SCCCCCC--TTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTT
T ss_pred CCCEEECCCC-ccCeeCHHHh--CcCcCCCEEECCC-CcCCccC--HhHccCCcccceeEecC-CcCcEeChhHhccCCC
Confidence 9999999987 6666665432 2689999999998 5777777 45588999999999999 467777764 34689
Q ss_pred cceeeecCCCCCCCCCCC--CCCCCCcEEeecCCc
Q 045261 158 LLDLCIFNCPNLTSLPKV--GLPSSLLELTIFDCP 190 (227)
Q Consensus 158 L~~l~i~~c~~l~~~~~~--~~~~~L~~L~l~~c~ 190 (227)
|++|+++++ .++.++.. ..+++|+.|++.+++
T Consensus 183 L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 183 LKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp CCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCEEECCCC-cCCcCCHHHhccccCCCEEEecCCC
Confidence 999999987 56667653 347899999998765
No 7
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.71 E-value=7e-16 Score=122.33 Aligned_cols=176 Identities=18% Similarity=0.210 Sum_probs=120.4
Q ss_pred CCCCccEEEeccCCCCCcCC-cccCCCCCcceEeecCCCCCcccCC-C-CCCCCcceeEeccCcccccccchhcccccCC
Q 045261 3 LPESISSVEIRRCEKLGALP-SDMHKLNSLQDLDIRECPSIVSFPE-E-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLT 79 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~~~~-~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~ 79 (227)
++++|+.|+++++. ++.++ ..+..+++|++|+++++. +..+.. . ..+++|++|++ +++..+. .+.+..+..++
T Consensus 30 ~~~~l~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l-~~n~~l~-~~~~~~~~~l~ 105 (285)
T 1ozn_A 30 IPAASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDL-SDNAQLR-SVDPATFHGLG 105 (285)
T ss_dssp CCTTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEEC-CSCTTCC-CCCTTTTTTCT
T ss_pred CCCCceEEEeeCCc-CCccCHHHcccCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeC-CCCCCcc-ccCHHHhcCCc
Confidence 56788889988854 55554 567888888888888864 555533 3 67788888888 7755454 44455677888
Q ss_pred ccceEEeccCCCCCccC-ccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCC
Q 045261 80 SLRWLLIERCDESECFP-DGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPS 156 (227)
Q Consensus 80 ~L~~L~l~~~~~l~~l~-~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~ 156 (227)
+|++|+++++ .+..++ ..+. .+++|++|++++ +.+..++ ...+..+++|++|+++++ .+..++.. ...+
T Consensus 106 ~L~~L~l~~n-~l~~~~~~~~~---~l~~L~~L~l~~-n~l~~~~--~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~ 177 (285)
T 1ozn_A 106 RLHTLHLDRC-GLQELGPGLFR---GLAALQYLYLQD-NALQALP--DDTFRDLGNLTHLFLHGN-RISSVPERAFRGLH 177 (285)
T ss_dssp TCCEEECTTS-CCCCCCTTTTT---TCTTCCEEECCS-SCCCCCC--TTTTTTCTTCCEEECCSS-CCCEECTTTTTTCT
T ss_pred CCCEEECCCC-cCCEECHhHhh---CCcCCCEEECCC-CcccccC--HhHhccCCCccEEECCCC-cccccCHHHhcCcc
Confidence 8888888887 555553 3333 578888888887 4566665 355778888888888884 56666653 3456
Q ss_pred ccceeeecCCCCCCCCCC-CCCCCCCcEEeecCCc
Q 045261 157 SLLDLCIFNCPNLTSLPK-VGLPSSLLELTIFDCP 190 (227)
Q Consensus 157 ~L~~l~i~~c~~l~~~~~-~~~~~~L~~L~l~~c~ 190 (227)
+|++|+++++..-+..+. ...+++|++|+++++.
T Consensus 178 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 212 (285)
T 1ozn_A 178 SLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN 212 (285)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred ccCEEECCCCcccccCHhHccCcccccEeeCCCCc
Confidence 788888887653333232 2346778888888763
No 8
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.71 E-value=3.1e-17 Score=146.86 Aligned_cols=180 Identities=16% Similarity=0.145 Sum_probs=108.9
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCccc
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLR 82 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~ 82 (227)
+++|+.|++++|...+.+|..+.++++|++|++++|.....+|.. ..+++|+.|++ +++ .+.+.+ +..++.+++|+
T Consensus 465 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L-~~N-~l~~~~-p~~l~~l~~L~ 541 (768)
T 3rgz_A 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL-SNN-SFSGNI-PAELGDCRSLI 541 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC-CSS-CCEEEC-CGGGGGCTTCC
T ss_pred CCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEEC-CCC-cccCcC-CHHHcCCCCCC
Confidence 567778888877666667777777777888887777644455554 66777777777 664 343233 34567777777
Q ss_pred eEEeccCCCCCccCccCcC-------------------------------------------------------------
Q 045261 83 WLLIERCDESECFPDGMMG------------------------------------------------------------- 101 (227)
Q Consensus 83 ~L~l~~~~~l~~l~~~~~~------------------------------------------------------------- 101 (227)
+|++++|.....+|..+..
T Consensus 542 ~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~ 621 (768)
T 3rgz_A 542 WLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYG 621 (768)
T ss_dssp EEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEE
T ss_pred EEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceec
Confidence 7777765433334432210
Q ss_pred ------CCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC-CCCCccceeeecCCCCCCCCCC
Q 045261 102 ------MTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV-GLPSSLLDLCIFNCPNLTSLPK 174 (227)
Q Consensus 102 ------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~l~i~~c~~l~~~~~ 174 (227)
...+++|+.|+++++.-...+| .+++++++|+.|+++++.-.+.+|.. +..++|+.|+++++..-+.+|.
T Consensus 622 g~~~~~~~~l~~L~~LdLs~N~l~g~ip---~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~ 698 (768)
T 3rgz_A 622 GHTSPTFDNNGSMMFLDMSYNMLSGYIP---KEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698 (768)
T ss_dssp EECCCSCSSSBCCCEEECCSSCCBSCCC---GGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCG
T ss_pred ccCchhhhccccccEEECcCCcccccCC---HHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCCh
Confidence 0023456677777654444566 66667777777777774443455543 4456666677766665555554
Q ss_pred C-CCCCCCcEEeecCC
Q 045261 175 V-GLPSSLLELTIFDC 189 (227)
Q Consensus 175 ~-~~~~~L~~L~l~~c 189 (227)
. ..+++|++|+++++
T Consensus 699 ~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 699 AMSALTMLTEIDLSNN 714 (768)
T ss_dssp GGGGCCCCSEEECCSS
T ss_pred HHhCCCCCCEEECcCC
Confidence 2 33566666666654
No 9
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.69 E-value=1.1e-16 Score=128.95 Aligned_cols=82 Identities=17% Similarity=0.174 Sum_probs=34.0
Q ss_pred CCccEEEecc-CCCCCcCCcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCccc
Q 045261 5 ESISSVEIRR-CEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLR 82 (227)
Q Consensus 5 ~~L~~L~l~~-~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~ 82 (227)
++|++|++++ +...+.+|..++++++|++|+++++.....+|.. ..+++|++|++ ++ +.+.+. .+..+..+++|+
T Consensus 76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L-s~-N~l~~~-~p~~~~~l~~L~ 152 (313)
T 1ogq_A 76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDF-SY-NALSGT-LPPSISSLPNLV 152 (313)
T ss_dssp TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEEC-CS-SEEESC-CCGGGGGCTTCC
T ss_pred CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeC-CC-CccCCc-CChHHhcCCCCC
Confidence 3444444443 2222334444444444444444443322233332 34445555555 33 222211 222344455555
Q ss_pred eEEeccC
Q 045261 83 WLLIERC 89 (227)
Q Consensus 83 ~L~l~~~ 89 (227)
+|+++++
T Consensus 153 ~L~L~~N 159 (313)
T 1ogq_A 153 GITFDGN 159 (313)
T ss_dssp EEECCSS
T ss_pred eEECcCC
Confidence 5555544
No 10
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.69 E-value=1.6e-15 Score=127.53 Aligned_cols=172 Identities=22% Similarity=0.344 Sum_probs=102.7
Q ss_pred CCccEEEeccCCCCCcCCc-ccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCcc
Q 045261 5 ESISSVEIRRCEKLGALPS-DMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSL 81 (227)
Q Consensus 5 ~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L 81 (227)
++|+.|++++| .++.++. .+.++++|++|+++++. +..++.. ..+++|+.|++ .+++.+. .+.+..+..+++|
T Consensus 112 ~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-i~~~~~~~~~~l~~L~~L~l-~~~~~l~-~i~~~~~~~l~~L 187 (440)
T 3zyj_A 112 ANLNTLELFDN-RLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDL-GELKRLS-YISEGAFEGLSNL 187 (440)
T ss_dssp SSCCEEECCSS-CCSSCCTTTSCSCSSCCEEECCSCC-CCEECTTTTTTCTTCCEEEC-CCCTTCC-EECTTTTTTCSSC
T ss_pred ccCCEEECCCC-cCCeeCHhHhhccccCceeeCCCCc-ccccCHHHhhhCcccCEeCC-CCCCCcc-eeCcchhhccccc
Confidence 44455555543 2333332 34555555555555542 4444432 44556666666 5544443 3344445666667
Q ss_pred ceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCCccc
Q 045261 82 RWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPSSLL 159 (227)
Q Consensus 82 ~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~ 159 (227)
++|+++++ .++.+|... .+++|++|+++++ .+..++ ...+..+++|++|++++ +.+..++.. ...++|+
T Consensus 188 ~~L~L~~n-~l~~~~~~~----~l~~L~~L~Ls~N-~l~~~~--~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~ 258 (440)
T 3zyj_A 188 RYLNLAMC-NLREIPNLT----PLIKLDELDLSGN-HLSAIR--PGSFQGLMHLQKLWMIQ-SQIQVIERNAFDNLQSLV 258 (440)
T ss_dssp CEEECTTS-CCSSCCCCT----TCSSCCEEECTTS-CCCEEC--TTTTTTCTTCCEEECTT-CCCCEECTTSSTTCTTCC
T ss_pred CeecCCCC-cCccccccC----CCcccCEEECCCC-ccCccC--hhhhccCccCCEEECCC-CceeEEChhhhcCCCCCC
Confidence 77777665 555666422 5677777777774 555553 36777888888888888 456665443 3457888
Q ss_pred eeeecCCCCCCCCCCC--CCCCCCcEEeecCCc
Q 045261 160 DLCIFNCPNLTSLPKV--GLPSSLLELTIFDCP 190 (227)
Q Consensus 160 ~l~i~~c~~l~~~~~~--~~~~~L~~L~l~~c~ 190 (227)
+|+++++ .++.++.. ..+++|+.|++++++
T Consensus 259 ~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 259 EINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP 290 (440)
T ss_dssp EEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred EEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence 8888886 45666653 336889999998754
No 11
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.68 E-value=1.4e-15 Score=128.33 Aligned_cols=153 Identities=24% Similarity=0.380 Sum_probs=87.3
Q ss_pred cCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCccCcCC
Q 045261 25 MHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGM 102 (227)
Q Consensus 25 ~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~ 102 (227)
+.++++|++|+++++. +..++.. ..+++|+.|++ ++|+.+. .+....+..+++|++|+++++ .+..+|...
T Consensus 143 ~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l-~~~~~l~-~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~--- 215 (452)
T 3zyi_A 143 FEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDL-GELKKLE-YISEGAFEGLFNLKYLNLGMC-NIKDMPNLT--- 215 (452)
T ss_dssp SSSCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEEC-CCCTTCC-EECTTTTTTCTTCCEEECTTS-CCSSCCCCT---
T ss_pred hcccCCCCEEECCCCC-cceeCHhHHhcCCcccEEeC-CCCCCcc-ccChhhccCCCCCCEEECCCC-ccccccccc---
Confidence 3444444444444432 3333332 34455555555 4444443 333334555566666666655 455554322
Q ss_pred CCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCCccceeeecCCCCCCCCCCC--CCC
Q 045261 103 TLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPSSLLDLCIFNCPNLTSLPKV--GLP 178 (227)
Q Consensus 103 ~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~l~i~~c~~l~~~~~~--~~~ 178 (227)
.+++|++|++++ +.+..++ ...+.++++|++|+++++ .+..++.. ...++|+.|+++++ .++.++.. ..+
T Consensus 216 -~l~~L~~L~Ls~-N~l~~~~--~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l 289 (452)
T 3zyi_A 216 -PLVGLEELEMSG-NHFPEIR--PGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPL 289 (452)
T ss_dssp -TCTTCCEEECTT-SCCSEEC--GGGGTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTC
T ss_pred -ccccccEEECcC-CcCcccC--cccccCccCCCEEEeCCC-cCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccc
Confidence 466777777776 3444443 266777888888888874 45555433 34578888888886 45666653 336
Q ss_pred CCCcEEeecCCc
Q 045261 179 SSLLELTIFDCP 190 (227)
Q Consensus 179 ~~L~~L~l~~c~ 190 (227)
++|++|++++++
T Consensus 290 ~~L~~L~L~~Np 301 (452)
T 3zyi_A 290 RYLVELHLHHNP 301 (452)
T ss_dssp TTCCEEECCSSC
T ss_pred cCCCEEEccCCC
Confidence 889999998754
No 12
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.68 E-value=1.4e-15 Score=120.58 Aligned_cols=176 Identities=20% Similarity=0.304 Sum_probs=137.3
Q ss_pred CCCCccEEEeccCCCCCcC-CcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCC
Q 045261 3 LPESISSVEIRRCEKLGAL-PSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLT 79 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~ 79 (227)
-+++|+.|+++++. ++.+ |..+.++++|++|+++++..+..++.. ..+++|++|++ +++ .+. .+.+..+..++
T Consensus 54 ~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l-~~n-~l~-~~~~~~~~~l~ 129 (285)
T 1ozn_A 54 ACRNLTILWLHSNV-LARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL-DRC-GLQ-ELGPGLFRGLA 129 (285)
T ss_dssp TCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC-TTS-CCC-CCCTTTTTTCT
T ss_pred cCCCCCEEECCCCc-cceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC-CCC-cCC-EECHhHhhCCc
Confidence 36899999999974 5554 678999999999999998767777443 78899999999 774 454 44455688999
Q ss_pred ccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccC-CCC-CCCCc
Q 045261 80 SLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSL-PKV-GLPSS 157 (227)
Q Consensus 80 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~-~~~-~~~~~ 157 (227)
+|++|+++++ .+..++.... ..+++|++|++++ +.+..++ ...+..+++|++|+++++ .+..+ +.. ...++
T Consensus 130 ~L~~L~l~~n-~l~~~~~~~~--~~l~~L~~L~l~~-n~l~~~~--~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~ 202 (285)
T 1ozn_A 130 ALQYLYLQDN-ALQALPDDTF--RDLGNLTHLFLHG-NRISSVP--ERAFRGLHSLDRLLLHQN-RVAHVHPHAFRDLGR 202 (285)
T ss_dssp TCCEEECCSS-CCCCCCTTTT--TTCTTCCEEECCS-SCCCEEC--TTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTT
T ss_pred CCCEEECCCC-cccccCHhHh--ccCCCccEEECCC-CcccccC--HHHhcCccccCEEECCCC-cccccCHhHccCccc
Confidence 9999999997 6777775432 2689999999998 5777777 356889999999999995 46555 332 45679
Q ss_pred cceeeecCCCCCCCCCC--CCCCCCCcEEeecCCc
Q 045261 158 LLDLCIFNCPNLTSLPK--VGLPSSLLELTIFDCP 190 (227)
Q Consensus 158 L~~l~i~~c~~l~~~~~--~~~~~~L~~L~l~~c~ 190 (227)
|+.|+++++. ++.++. ...+++|++|++++++
T Consensus 203 L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 203 LMTLYLFANN-LSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp CCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSSC
T ss_pred ccEeeCCCCc-CCcCCHHHcccCcccCEEeccCCC
Confidence 9999999974 555553 3457899999999875
No 13
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.67 E-value=9.4e-16 Score=118.56 Aligned_cols=177 Identities=19% Similarity=0.118 Sum_probs=137.1
Q ss_pred CCCCccEEEeccCCCCCcCCc-ccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCC
Q 045261 3 LPESISSVEIRRCEKLGALPS-DMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLT 79 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~ 79 (227)
-+++|+.|++++|..++.++. .+.++++|++|++++|..+..++.. ..+++|+.|++ +++ .++ .+ +. +..++
T Consensus 53 ~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l-~~n-~l~-~l-p~-~~~l~ 127 (239)
T 2xwt_C 53 NLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGI-FNT-GLK-MF-PD-LTKVY 127 (239)
T ss_dssp TCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEE-EEE-CCC-SC-CC-CTTCC
T ss_pred CCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeC-CCC-CCc-cc-cc-ccccc
Confidence 368999999999765777774 7889999999999986678888765 67899999999 764 454 33 32 77788
Q ss_pred ccc---eEEeccCCCCCccCccCcCCCCCCccc-eEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCC--
Q 045261 80 SLR---WLLIERCDESECFPDGMMGMTLPTSLV-HLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVG-- 153 (227)
Q Consensus 80 ~L~---~L~l~~~~~l~~l~~~~~~~~~~~~L~-~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~-- 153 (227)
+|+ +|+++++..++.++.... ..+++|+ .|++++ +.+..+| ...+.. ++|++|+++++..++.++...
T Consensus 128 ~L~~L~~L~l~~N~~l~~i~~~~~--~~l~~L~~~L~l~~-n~l~~i~--~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~ 201 (239)
T 2xwt_C 128 STDIFFILEITDNPYMTSIPVNAF--QGLCNETLTLKLYN-NGFTSVQ--GYAFNG-TKLDAVYLNKNKYLTVIDKDAFG 201 (239)
T ss_dssp BCCSEEEEEEESCTTCCEECTTTT--TTTBSSEEEEECCS-CCCCEEC--TTTTTT-CEEEEEECTTCTTCCEECTTTTT
T ss_pred ccccccEEECCCCcchhhcCcccc--cchhcceeEEEcCC-CCCcccC--HhhcCC-CCCCEEEcCCCCCcccCCHHHhh
Confidence 887 999999867888886532 2688999 999998 6777888 334444 899999999976688887643
Q ss_pred CC-CccceeeecCCCCCCCCCCCCCCCCCcEEeecCCchh
Q 045261 154 LP-SSLLDLCIFNCPNLTSLPKVGLPSSLLELTIFDCPKL 192 (227)
Q Consensus 154 ~~-~~L~~l~i~~c~~l~~~~~~~~~~~L~~L~l~~c~~l 192 (227)
.. ++|+.|+++++ .++.+|.. .+++|+.|++.++..|
T Consensus 202 ~l~~~L~~L~l~~N-~l~~l~~~-~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 202 GVYSGPSLLDVSQT-SVTALPSK-GLEHLKELIARNTWTL 239 (239)
T ss_dssp TCSBCCSEEECTTC-CCCCCCCT-TCTTCSEEECTTC---
T ss_pred ccccCCcEEECCCC-ccccCChh-HhccCceeeccCccCC
Confidence 34 78999999984 56777765 5789999999987653
No 14
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.66 E-value=3e-14 Score=112.15 Aligned_cols=193 Identities=25% Similarity=0.348 Sum_probs=144.5
Q ss_pred CccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCccce
Q 045261 6 SISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRW 83 (227)
Q Consensus 6 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~ 83 (227)
+.+.+++++ ..++.+|..+. ++|++|+++++. +..++.. ..+++|++|++ ++ +.++ .+++..+..+++|++
T Consensus 17 ~~~~l~~~~-~~l~~ip~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l-~~-n~l~-~i~~~~~~~l~~L~~ 89 (270)
T 2o6q_A 17 NKNSVDCSS-KKLTAIPSNIP--ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYL-ND-NKLQ-TLPAGIFKELKNLET 89 (270)
T ss_dssp TTTEEECTT-SCCSSCCSCCC--TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEEC-CS-SCCS-CCCTTTTSSCTTCCE
T ss_pred CCCEEEccC-CCCCccCCCCC--CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEEC-CC-CccC-eeChhhhcCCCCCCE
Confidence 567889988 56778886554 689999999975 7777753 78899999999 77 4554 555656788999999
Q ss_pred EEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCCcccee
Q 045261 84 LLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPSSLLDL 161 (227)
Q Consensus 84 L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~l 161 (227)
|+++++ .+..++.... ..+++|++|++++ +.+..++ ...+..+++|++|++++ +.+..++.. ...++|++|
T Consensus 90 L~l~~n-~l~~~~~~~~--~~l~~L~~L~l~~-n~l~~~~--~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L 162 (270)
T 2o6q_A 90 LWVTDN-KLQALPIGVF--DQLVNLAELRLDR-NQLKSLP--PRVFDSLTKLTYLSLGY-NELQSLPKGVFDKLTSLKEL 162 (270)
T ss_dssp EECCSS-CCCCCCTTTT--TTCSSCCEEECCS-SCCCCCC--TTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEE
T ss_pred EECCCC-cCCcCCHhHc--ccccCCCEEECCC-CccCeeC--HHHhCcCcCCCEEECCC-CcCCccCHhHccCCccccee
Confidence 999997 6777776442 2688999999998 5677776 46688999999999999 468888764 456899999
Q ss_pred eecCCCCCCCCCCC--CCCCCCcEEeecCCchhhhhhcccCCCCcccccccceEEeccC
Q 045261 162 CIFNCPNLTSLPKV--GLPSSLLELTIFDCPKLRKECKRDKGKGWSKIANIPMFLIDDT 218 (227)
Q Consensus 162 ~i~~c~~l~~~~~~--~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 218 (227)
+++++. ++.++.. ..+++|++|+++++. ++. .....+..+.++..+.+.+.
T Consensus 163 ~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N~-l~~----~~~~~~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 163 RLYNNQ-LKRVPEGAFDKLTELKTLKLDNNQ-LKR----VPEGAFDSLEKLKMLQLQEN 215 (270)
T ss_dssp ECCSSC-CSCCCTTTTTTCTTCCEEECCSSC-CSC----CCTTTTTTCTTCCEEECCSS
T ss_pred EecCCc-CcEeChhHhccCCCcCEEECCCCc-CCc----CCHHHhccccCCCEEEecCC
Confidence 999864 5666653 347899999999873 221 12223445666777777664
No 15
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.65 E-value=7.8e-15 Score=115.65 Aligned_cols=173 Identities=25% Similarity=0.307 Sum_probs=133.7
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccce
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRW 83 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~ 83 (227)
+++|+.|+++++ .+..++ .+..+++|++|+++++. +..++....+++|++|++ +++ .++ .+.+..+..+++|++
T Consensus 40 l~~L~~L~l~~~-~i~~~~-~l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L-~~n-~l~-~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 40 LNSIDQIIANNS-DIKSVQ-GIQYLPNVRYLALGGNK-LHDISALKELTNLTYLIL-TGN-QLQ-SLPNGVFDKLTNLKE 113 (272)
T ss_dssp HTTCCEEECTTS-CCCCCT-TGGGCTTCCEEECTTSC-CCCCGGGTTCTTCCEEEC-TTS-CCC-CCCTTTTTTCTTCCE
T ss_pred ccceeeeeeCCC-Cccccc-ccccCCCCcEEECCCCC-CCCchhhcCCCCCCEEEC-CCC-ccC-ccChhHhcCCcCCCE
Confidence 468999999996 456555 48889999999999975 666654478899999999 774 555 455556789999999
Q ss_pred EEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCCcccee
Q 045261 84 LLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPSSLLDL 161 (227)
Q Consensus 84 L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~l 161 (227)
|+++++ .+..++.... ..+++|++|+++++ .+..++ ...+.++++|++|++++| .+..++.. ..+++|++|
T Consensus 114 L~L~~n-~l~~~~~~~~--~~l~~L~~L~L~~n-~l~~~~--~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L 186 (272)
T 3rfs_A 114 LVLVEN-QLQSLPDGVF--DKLTNLTYLNLAHN-QLQSLP--KGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDL 186 (272)
T ss_dssp EECTTS-CCCCCCTTTT--TTCTTCCEEECCSS-CCCCCC--TTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEE
T ss_pred EECCCC-cCCccCHHHh--ccCCCCCEEECCCC-ccCccC--HHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEE
Confidence 999998 6667766432 26889999999985 677776 356789999999999995 67777663 456899999
Q ss_pred eecCCCCCCCCCCC--CCCCCCcEEeecCCc
Q 045261 162 CIFNCPNLTSLPKV--GLPSSLLELTIFDCP 190 (227)
Q Consensus 162 ~i~~c~~l~~~~~~--~~~~~L~~L~l~~c~ 190 (227)
+++++. ++.++.. ..+++|++|++.+++
T Consensus 187 ~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 216 (272)
T 3rfs_A 187 RLYQNQ-LKSVPDGVFDRLTSLQYIWLHDNP 216 (272)
T ss_dssp ECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCc-CCccCHHHHhCCcCCCEEEccCCC
Confidence 999875 4555543 457999999998753
No 16
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.65 E-value=1.6e-15 Score=135.82 Aligned_cols=131 Identities=19% Similarity=0.206 Sum_probs=62.8
Q ss_pred CCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCccce
Q 045261 5 ESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRW 83 (227)
Q Consensus 5 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~ 83 (227)
++|+.|++++|...+.+|..+.++++|++|++++|.....+|.. ..+++|++|++ +++ .+.+. .+..+..+++|++
T Consensus 418 ~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L-~~N-~l~~~-~p~~l~~l~~L~~ 494 (768)
T 3rgz_A 418 SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL-DFN-DLTGE-IPSGLSNCTNLNW 494 (768)
T ss_dssp TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC-CSS-CCCSC-CCGGGGGCTTCCE
T ss_pred CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEe-cCC-cccCc-CCHHHhcCCCCCE
Confidence 34444444444333334444444444444444444322233333 34455555555 442 23212 2334555566666
Q ss_pred EEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCC
Q 045261 84 LLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCP 144 (227)
Q Consensus 84 L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~ 144 (227)
|++++|.....+|..++ .+++|+.|++++|.....+| ..+..+++|+.|++++|+
T Consensus 495 L~L~~N~l~~~~p~~~~---~l~~L~~L~L~~N~l~~~~p---~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 495 ISLSNNRLTGEIPKWIG---RLENLAILKLSNNSFSGNIP---AELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp EECCSSCCCSCCCGGGG---GCTTCCEEECCSSCCEEECC---GGGGGCTTCCEEECCSSE
T ss_pred EEccCCccCCcCChHHh---cCCCCCEEECCCCcccCcCC---HHHcCCCCCCEEECCCCc
Confidence 66665533334555443 45566666666544444455 555555666666655543
No 17
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.65 E-value=4.1e-15 Score=126.07 Aligned_cols=81 Identities=16% Similarity=0.217 Sum_probs=35.8
Q ss_pred CCCccEEEeccCCCCCcC-CcccCCCCCcceEeecCCCCCcccCC-C-CCCCCcceeEeccCcccccccchhcccccCCc
Q 045261 4 PESISSVEIRRCEKLGAL-PSDMHKLNSLQDLDIRECPSIVSFPE-E-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTS 80 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~~~~-~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~ 80 (227)
.++++.|+++++. ++.+ +..+.++++|++|+++++. +..+.+ . ..+++|+.|++ ++ +.+. .+++..+..+++
T Consensus 31 ~~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L-~~-n~l~-~~~~~~~~~l~~ 105 (477)
T 2id5_A 31 PTETRLLDLGKNR-IKTLNQDEFASFPHLEELELNENI-VSAVEPGAFNNLFNLRTLGL-RS-NRLK-LIPLGVFTGLSN 105 (477)
T ss_dssp CTTCSEEECCSSC-CCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEC-CS-SCCC-SCCTTSSTTCTT
T ss_pred CCCCcEEECCCCc-cceECHhHccCCCCCCEEECCCCc-cCEeChhhhhCCccCCEEEC-CC-CcCC-ccCcccccCCCC
Confidence 3455555555532 3332 3445555555555555542 333322 1 44455555555 33 2232 222333444445
Q ss_pred cceEEeccC
Q 045261 81 LRWLLIERC 89 (227)
Q Consensus 81 L~~L~l~~~ 89 (227)
|++|+++++
T Consensus 106 L~~L~Ls~n 114 (477)
T 2id5_A 106 LTKLDISEN 114 (477)
T ss_dssp CCEEECTTS
T ss_pred CCEEECCCC
Confidence 555555444
No 18
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.64 E-value=1.2e-17 Score=135.40 Aligned_cols=179 Identities=16% Similarity=0.177 Sum_probs=111.4
Q ss_pred CCCccEEEeccCCCCCc-CCcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCcc
Q 045261 4 PESISSVEIRRCEKLGA-LPSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSL 81 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~-lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L 81 (227)
+++|+.|++++|..... ++..+..+++|++|++++|......+.. ..+++|++|++ ++|..+++...+..+..+++|
T Consensus 92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L-~~~~~l~~~~l~~~~~~~~~L 170 (336)
T 2ast_B 92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL-SGCSGFSEFALQTLLSSCSRL 170 (336)
T ss_dssp CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC-TTCBSCCHHHHHHHHHHCTTC
T ss_pred CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC-CCCCCCCHHHHHHHHhcCCCC
Confidence 46777777777652222 5556677777888888777422223322 45778888888 776556533334446677788
Q ss_pred ceEEeccCCCCCc--cCccCcCCCCCC-ccceEEEecCC-Cc--cccCCCCCCccCCCCccEEeecCCCCCcc--CCCCC
Q 045261 82 RWLLIERCDESEC--FPDGMMGMTLPT-SLVHLNIVEFQ-KL--KNLSSSSSGFHSLTSLRRLLIQDCPNLTS--LPKVG 153 (227)
Q Consensus 82 ~~L~l~~~~~l~~--l~~~~~~~~~~~-~L~~L~l~~~~-~l--~~l~~~~~~l~~l~~L~~L~l~~c~~l~~--~~~~~ 153 (227)
++|++++|..+.. ++..+. .++ +|++|++++|. .+ ..++ ..+.++++|++|++++|..++. ++...
T Consensus 171 ~~L~l~~~~~l~~~~~~~~~~---~l~~~L~~L~l~~~~~~~~~~~l~---~~~~~~~~L~~L~l~~~~~l~~~~~~~l~ 244 (336)
T 2ast_B 171 DELNLSWCFDFTEKHVQVAVA---HVSETITQLNLSGYRKNLQKSDLS---TLVRRCPNLVHLDLSDSVMLKNDCFQEFF 244 (336)
T ss_dssp CEEECCCCTTCCHHHHHHHHH---HSCTTCCEEECCSCGGGSCHHHHH---HHHHHCTTCSEEECTTCTTCCGGGGGGGG
T ss_pred CEEcCCCCCCcChHHHHHHHH---hcccCCCEEEeCCCcccCCHHHHH---HHHhhCCCCCEEeCCCCCcCCHHHHHHHh
Confidence 8888887755543 343333 466 78888888764 33 3344 4556778888888888764443 22223
Q ss_pred CCCccceeeecCCCCCCCCC--CCCCCCCCcEEeecCC
Q 045261 154 LPSSLLDLCIFNCPNLTSLP--KVGLPSSLLELTIFDC 189 (227)
Q Consensus 154 ~~~~L~~l~i~~c~~l~~~~--~~~~~~~L~~L~l~~c 189 (227)
..++|++|++++|..+.... ....+++|++|++++|
T Consensus 245 ~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 245 QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 45788888888886443321 1234678888888887
No 19
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.63 E-value=1.6e-14 Score=114.93 Aligned_cols=174 Identities=20% Similarity=0.203 Sum_probs=127.4
Q ss_pred CCCCccEEEeccCCCCCcC-CcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCcc
Q 045261 3 LPESISSVEIRRCEKLGAL-PSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSL 81 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L 81 (227)
++++++.|+++++. ++.+ +..+.++++|++|+++++. +..++....+++|+.|++ ++ +.+. .+ +..+..+++|
T Consensus 29 ~~~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~L-s~-N~l~-~l-~~~~~~l~~L 102 (290)
T 1p9a_G 29 LPKDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAE-LTKLQVDGTLPVLGTLDL-SH-NQLQ-SL-PLLGQTLPAL 102 (290)
T ss_dssp CCTTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSC-CCEEECCSCCTTCCEEEC-CS-SCCS-SC-CCCTTTCTTC
T ss_pred CCCCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCCc-cCcccCCCCCCcCCEEEC-CC-CcCC-cC-chhhccCCCC
Confidence 45678888888864 4443 4677888889999988864 666666677888999998 66 4554 33 3457788899
Q ss_pred ceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCCccc
Q 045261 82 RWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPSSLL 159 (227)
Q Consensus 82 ~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~ 159 (227)
++|+++++ .++.++.... ..+++|++|++++ +.+..++ ...+..+++|++|++++ +.++.++.. ...++|+
T Consensus 103 ~~L~l~~N-~l~~l~~~~~--~~l~~L~~L~L~~-N~l~~~~--~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~ 175 (290)
T 1p9a_G 103 TVLDVSFN-RLTSLPLGAL--RGLGELQELYLKG-NELKTLP--PGLLTPTPKLEKLSLAN-NNLTELPAGLLNGLENLD 175 (290)
T ss_dssp CEEECCSS-CCCCCCSSTT--TTCTTCCEEECTT-SCCCCCC--TTTTTTCTTCCEEECTT-SCCSCCCTTTTTTCTTCC
T ss_pred CEEECCCC-cCcccCHHHH--cCCCCCCEEECCC-CCCCccC--hhhcccccCCCEEECCC-CcCCccCHHHhcCcCCCC
Confidence 99999987 6777764422 2678899999988 5677776 45577889999999988 568888764 3467899
Q ss_pred eeeecCCCCCCCCCCC-CCCCCCcEEeecCCc
Q 045261 160 DLCIFNCPNLTSLPKV-GLPSSLLELTIFDCP 190 (227)
Q Consensus 160 ~l~i~~c~~l~~~~~~-~~~~~L~~L~l~~c~ 190 (227)
+|+++++. ++.+|.. ...++|+.+++++++
T Consensus 176 ~L~L~~N~-l~~ip~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 176 TLLLQENS-LYTIPKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp EEECCSSC-CCCCCTTTTTTCCCSEEECCSCC
T ss_pred EEECCCCc-CCccChhhcccccCCeEEeCCCC
Confidence 99998854 5677664 335789999998654
No 20
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.63 E-value=2.1e-14 Score=117.18 Aligned_cols=178 Identities=18% Similarity=0.232 Sum_probs=114.5
Q ss_pred CCCCccEEEeccCCCCCcCCc-ccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCC
Q 045261 3 LPESISSVEIRRCEKLGALPS-DMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLT 79 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~ 79 (227)
+++++++|+++++ .++.+|. .+.++++|++|+++++...+.++.. ..+++++++.+ .+++++. .+.+..+..++
T Consensus 28 l~~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~-~~~N~l~-~l~~~~f~~l~ 104 (350)
T 4ay9_X 28 LPRNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI-EKANNLL-YINPEAFQNLP 104 (350)
T ss_dssp CCTTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE-EEETTCC-EECTTSBCCCT
T ss_pred cCCCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc-ccCCccc-ccCchhhhhcc
Confidence 5678999999995 6788885 6899999999999998766667654 56788887766 6778887 66677789999
Q ss_pred ccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCC-CccEEeecCCCCCccCCCCC-CCCc
Q 045261 80 SLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLT-SLRRLLIQDCPNLTSLPKVG-LPSS 157 (227)
Q Consensus 80 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~-~L~~L~l~~c~~l~~~~~~~-~~~~ 157 (227)
+|++|+++++ .+..++.... ....++..+++.+++.+..++ ...+..+. .++.|++++ +.++.++... ...+
T Consensus 105 ~L~~L~l~~n-~l~~~~~~~~--~~~~~l~~l~l~~~~~i~~l~--~~~f~~~~~~l~~L~L~~-N~i~~i~~~~f~~~~ 178 (350)
T 4ay9_X 105 NLQYLLISNT-GIKHLPDVHK--IHSLQKVLLDIQDNINIHTIE--RNSFVGLSFESVILWLNK-NGIQEIHNSAFNGTQ 178 (350)
T ss_dssp TCCEEEEEEE-CCSSCCCCTT--CCBSSCEEEEEESCTTCCEEC--TTSSTTSBSSCEEEECCS-SCCCEECTTSSTTEE
T ss_pred cccccccccc-ccccCCchhh--cccchhhhhhhcccccccccc--ccchhhcchhhhhhcccc-ccccCCChhhccccc
Confidence 9999999987 6666654332 123455566666656666655 23344433 355555555 3455554431 2234
Q ss_pred cceeeecCCCCCCCCCCC--CCCCCCcEEeecCC
Q 045261 158 LLDLCIFNCPNLTSLPKV--GLPSSLLELTIFDC 189 (227)
Q Consensus 158 L~~l~i~~c~~l~~~~~~--~~~~~L~~L~l~~c 189 (227)
++++.+.+++.++.++.. ..+++|++|+++++
T Consensus 179 L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N 212 (350)
T 4ay9_X 179 LDELNLSDNNNLEELPNDVFHGASGPVILDISRT 212 (350)
T ss_dssp EEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS
T ss_pred hhHHhhccCCcccCCCHHHhccCcccchhhcCCC
Confidence 555555555555555542 22445555555543
No 21
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.63 E-value=4.9e-15 Score=118.92 Aligned_cols=167 Identities=14% Similarity=0.273 Sum_probs=88.2
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccce
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRW 83 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~ 83 (227)
+++|+.|++++| .+..++. +..+++|++|+++++. +..++....+++|+.|++ +++ .+. .+. .+..+++|++
T Consensus 62 l~~L~~L~L~~n-~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~L~l-~~n-~l~-~~~--~l~~l~~L~~ 133 (308)
T 1h6u_A 62 LNNLIGLELKDN-QITDLAP-LKNLTKITELELSGNP-LKNVSAIAGLQSIKTLDL-TST-QIT-DVT--PLAGLSNLQV 133 (308)
T ss_dssp CTTCCEEECCSS-CCCCCGG-GTTCCSCCEEECCSCC-CSCCGGGTTCTTCCEEEC-TTS-CCC-CCG--GGTTCTTCCE
T ss_pred cCCCCEEEccCC-cCCCChh-HccCCCCCEEEccCCc-CCCchhhcCCCCCCEEEC-CCC-CCC-Cch--hhcCCCCCCE
Confidence 345555555553 3344444 5555555555555543 444433345555555555 443 232 121 2455566666
Q ss_pred EEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccceeee
Q 045261 84 LLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCI 163 (227)
Q Consensus 84 L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~i 163 (227)
|+++++ .+..++. +. .+++|+.|++++ +.+..++ . +..+++|++|++++ +.+..++.....++|++|++
T Consensus 134 L~l~~n-~l~~~~~-l~---~l~~L~~L~l~~-n~l~~~~---~-l~~l~~L~~L~l~~-n~l~~~~~l~~l~~L~~L~L 202 (308)
T 1h6u_A 134 LYLDLN-QITNISP-LA---GLTNLQYLSIGN-AQVSDLT---P-LANLSKLTTLKADD-NKISDISPLASLPNLIEVHL 202 (308)
T ss_dssp EECCSS-CCCCCGG-GG---GCTTCCEEECCS-SCCCCCG---G-GTTCTTCCEEECCS-SCCCCCGGGGGCTTCCEEEC
T ss_pred EECCCC-ccCcCcc-cc---CCCCccEEEccC-CcCCCCh---h-hcCCCCCCEEECCC-CccCcChhhcCCCCCCEEEc
Confidence 666654 4444443 21 456666666665 3455554 2 55666666666666 34555544344566677777
Q ss_pred cCCCCCCCCCCCCCCCCCcEEeecCCc
Q 045261 164 FNCPNLTSLPKVGLPSSLLELTIFDCP 190 (227)
Q Consensus 164 ~~c~~l~~~~~~~~~~~L~~L~l~~c~ 190 (227)
+++. +..++....+++|+.|++++++
T Consensus 203 ~~N~-l~~~~~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 203 KNNQ-ISDVSPLANTSNLFIVTLTNQT 228 (308)
T ss_dssp TTSC-CCBCGGGTTCTTCCEEEEEEEE
T ss_pred cCCc-cCccccccCCCCCCEEEccCCe
Confidence 6653 3344434446677777777654
No 22
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.62 E-value=3.6e-14 Score=120.26 Aligned_cols=199 Identities=18% Similarity=0.192 Sum_probs=146.8
Q ss_pred CCCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCc
Q 045261 3 LPESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTS 80 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~ 80 (227)
-+++|+.|++++|......|..+.++++|++|+++++. +..++.. ..+++|++|++ ++ +.+. ...+..+..+++
T Consensus 54 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L-s~-n~i~-~~~~~~~~~l~~ 129 (477)
T 2id5_A 54 SFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDI-SE-NKIV-ILLDYMFQDLYN 129 (477)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSSTTCTTCCEEEC-TT-SCCC-EECTTTTTTCTT
T ss_pred CCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc-CCccCcccccCCCCCCEEEC-CC-Cccc-cCChhHcccccc
Confidence 36899999999975433347889999999999999864 7777764 67899999999 76 4454 444567889999
Q ss_pred cceEEeccCCCCCccCc-cCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCCc
Q 045261 81 LRWLLIERCDESECFPD-GMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPSS 157 (227)
Q Consensus 81 L~~L~l~~~~~l~~l~~-~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~ 157 (227)
|++|+++++ .+..++. .+. .+++|++|++++ +.+..++ ...+.++++|+.|++.++ .+..++.. ...++
T Consensus 130 L~~L~l~~n-~l~~~~~~~~~---~l~~L~~L~l~~-n~l~~~~--~~~l~~l~~L~~L~l~~n-~i~~~~~~~~~~l~~ 201 (477)
T 2id5_A 130 LKSLEVGDN-DLVYISHRAFS---GLNSLEQLTLEK-CNLTSIP--TEALSHLHGLIVLRLRHL-NINAIRDYSFKRLYR 201 (477)
T ss_dssp CCEEEECCT-TCCEECTTSST---TCTTCCEEEEES-CCCSSCC--HHHHTTCTTCCEEEEESC-CCCEECTTCSCSCTT
T ss_pred CCEEECCCC-ccceeChhhcc---CCCCCCEEECCC-CcCcccC--hhHhcccCCCcEEeCCCC-cCcEeChhhcccCcc
Confidence 999999987 5555543 443 688999999998 4666766 356889999999999995 56665543 45678
Q ss_pred cceeeecCCCCCCCCCCCCC-CCCCcEEeecCCchhhhhhcccCCCCcccccccceEEeccC
Q 045261 158 LLDLCIFNCPNLTSLPKVGL-PSSLLELTIFDCPKLRKECKRDKGKGWSKIANIPMFLIDDT 218 (227)
Q Consensus 158 L~~l~i~~c~~l~~~~~~~~-~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 218 (227)
|++|++++|+.++.++...+ ..+|++|++++|. ++. .....+..+.++..+.+.+.
T Consensus 202 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~----~~~~~~~~l~~L~~L~Ls~n 258 (477)
T 2id5_A 202 LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCN-LTA----VPYLAVRHLVYLRFLNLSYN 258 (477)
T ss_dssp CCEEEEECCTTCCEECTTTTTTCCCSEEEEESSC-CCS----CCHHHHTTCTTCCEEECCSS
T ss_pred cceeeCCCCccccccCcccccCccccEEECcCCc-ccc----cCHHHhcCccccCeeECCCC
Confidence 99999999998888876433 5699999999874 221 11112334556666666654
No 23
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.62 E-value=1.7e-14 Score=113.85 Aligned_cols=133 Identities=21% Similarity=0.300 Sum_probs=94.8
Q ss_pred CCCCccEEEeccCCCCCcCC-cccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCC
Q 045261 3 LPESISSVEIRRCEKLGALP-SDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLT 79 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~ 79 (227)
+.++|+.|+++++ .++.++ ..+.++++|++|+++++. +..++.. ..+++|+.|++ ++ +.+. .+.+..+..++
T Consensus 26 l~~~l~~L~ls~n-~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L-~~-n~l~-~~~~~~~~~l~ 100 (276)
T 2z62_A 26 LPFSTKNLDLSFN-PLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLIL-TG-NPIQ-SLALGAFSGLS 100 (276)
T ss_dssp SCTTCCEEECTTC-CCCEECTTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEEC-TT-CCCC-EECTTTTTTCT
T ss_pred CCCCccEEECCCC-cccccCHhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEEC-CC-CccC-ccChhhhcCCc
Confidence 4567999999986 455555 478889999999998874 6666653 67889999999 66 4444 34445678888
Q ss_pred ccceEEeccCCCCCccCc-cCcCCCCCCccceEEEecCCCccc--cCCCCCCccCCCCccEEeecCCCCCccC
Q 045261 80 SLRWLLIERCDESECFPD-GMMGMTLPTSLVHLNIVEFQKLKN--LSSSSSGFHSLTSLRRLLIQDCPNLTSL 149 (227)
Q Consensus 80 ~L~~L~l~~~~~l~~l~~-~~~~~~~~~~L~~L~l~~~~~l~~--l~~~~~~l~~l~~L~~L~l~~c~~l~~~ 149 (227)
+|++|++.++ .+..++. .+. .+++|++|++++ +.+.. +| ..+.++++|++|+++++ .+..+
T Consensus 101 ~L~~L~l~~n-~l~~~~~~~~~---~l~~L~~L~l~~-n~l~~~~l~---~~~~~l~~L~~L~Ls~N-~l~~~ 164 (276)
T 2z62_A 101 SLQKLVAVET-NLASLENFPIG---HLKTLKELNVAH-NLIQSFKLP---EYFSNLTNLEHLDLSSN-KIQSI 164 (276)
T ss_dssp TCCEEECTTS-CCCCSTTCCCT---TCTTCCEEECCS-SCCCCCCCC---GGGGGCTTCCEEECCSS-CCCEE
T ss_pred cccEEECCCC-CccccCchhcc---cCCCCCEEECcC-CccceecCc---hhhccCCCCCEEECCCC-CCCcC
Confidence 8999988886 5555554 333 678888888887 44544 56 67778888888888874 34443
No 24
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.62 E-value=3.1e-14 Score=123.97 Aligned_cols=175 Identities=18% Similarity=0.086 Sum_probs=98.2
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCccc-CCC-CCCCCcceeEeccCcccccccchhcccccCCcc
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSF-PEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSL 81 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~-~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L 81 (227)
+++|+.|++++| .++++|..+.++++|++|+++++. +..+ +.. ..+++|+.|++ +++... ..++...+..+++|
T Consensus 277 l~~L~~L~l~~n-~l~~lp~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l-~~n~~~-~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 277 FSGLQELDLTAT-HLSELPSGLVGLSTLKKLVLSANK-FENLCQISASNFPSLTHLSI-KGNTKR-LELGTGCLENLENL 352 (606)
T ss_dssp CTTCSEEECTTS-CCSCCCSSCCSCTTCCEEECTTCC-CSBGGGGCGGGCTTCSEEEC-CSCSSC-CBCCSSTTTTCTTC
T ss_pred ccCCCEEeccCC-ccCCCChhhcccccCCEEECccCC-cCcCchhhhhccCcCCEEEC-CCCCcc-cccchhhhhccCcC
Confidence 456777777775 455666666777777777777654 3333 222 55666666666 554322 23333345666677
Q ss_pred ceEEeccCCCCCcc---CccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccC-CCC--CCC
Q 045261 82 RWLLIERCDESECF---PDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSL-PKV--GLP 155 (227)
Q Consensus 82 ~~L~l~~~~~l~~l---~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~-~~~--~~~ 155 (227)
++|+++++ .+..+ +..+. .+++|++|+++++ .+..++ ...+..+++|++|+++++. +... +.. ...
T Consensus 353 ~~L~l~~n-~l~~~~~~~~~~~---~l~~L~~L~l~~n-~l~~~~--~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l 424 (606)
T 3t6q_A 353 RELDLSHD-DIETSDCCNLQLR---NLSHLQSLNLSYN-EPLSLK--TEAFKECPQLELLDLAFTR-LKVKDAQSPFQNL 424 (606)
T ss_dssp CEEECCSS-CCCEEEESTTTTT---TCTTCCEEECCSC-SCEEEC--TTTTTTCTTCSEEECTTCC-EECCTTCCTTTTC
T ss_pred CEEECCCC-ccccccCcchhcc---cCCCCCEEECCCC-cCCcCC--HHHhcCCccCCeEECCCCc-CCCcccchhhhCc
Confidence 77777665 33333 33332 5667777777764 333332 2566667777777777643 3322 221 345
Q ss_pred CccceeeecCCCCCCCCCC-CCCCCCCcEEeecCCc
Q 045261 156 SSLLDLCIFNCPNLTSLPK-VGLPSSLLELTIFDCP 190 (227)
Q Consensus 156 ~~L~~l~i~~c~~l~~~~~-~~~~~~L~~L~l~~c~ 190 (227)
++|++|++++|..-...+. ...+++|++|++++|.
T Consensus 425 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 460 (606)
T 3t6q_A 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNH 460 (606)
T ss_dssp TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCB
T ss_pred ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCC
Confidence 6677777776654333332 2335677777777664
No 25
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.62 E-value=7.7e-15 Score=117.41 Aligned_cols=173 Identities=23% Similarity=0.178 Sum_probs=93.5
Q ss_pred CCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCC--C-CCCCCcceeEeccCcccccccchhcccccCCcc
Q 045261 5 ESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPE--E-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSL 81 (227)
Q Consensus 5 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~--~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L 81 (227)
++|+.|++++| .+..+|..+..+++|++|+++++. +..++. . ..+++|+.|++ +++ .+. ...+..+..+++|
T Consensus 78 ~~L~~L~Ls~n-~i~~l~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l-~~n-~l~-~~~~~~~~~l~~L 152 (306)
T 2z66_A 78 TSLKYLDLSFN-GVITMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDI-SHT-HTR-VAFNGIFNGLSSL 152 (306)
T ss_dssp SCCCEEECCSC-SEEEEEEEEETCTTCCEEECTTSE-EESSTTTTTTTTCTTCCEEEC-TTS-CCE-ECSTTTTTTCTTC
T ss_pred cccCEEECCCC-ccccChhhcCCCCCCCEEECCCCc-ccccccchhhhhccCCCEEEC-CCC-cCC-ccchhhcccCcCC
Confidence 34444444443 233444445556666666665542 444432 1 45566666666 543 232 2233345566666
Q ss_pred ceEEeccCCCCCc--cCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCCc
Q 045261 82 RWLLIERCDESEC--FPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPSS 157 (227)
Q Consensus 82 ~~L~l~~~~~l~~--l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~ 157 (227)
++|+++++ .+.. +|..+. .+++|++|+++++ .+..++ ...+..+++|++|++++ +.+..++.. ...++
T Consensus 153 ~~L~l~~n-~l~~~~~~~~~~---~l~~L~~L~Ls~n-~l~~~~--~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~ 224 (306)
T 2z66_A 153 EVLKMAGN-SFQENFLPDIFT---ELRNLTFLDLSQC-QLEQLS--PTAFNSLSSLQVLNMSH-NNFFSLDTFPYKCLNS 224 (306)
T ss_dssp CEEECTTC-EEGGGEECSCCT---TCTTCCEEECTTS-CCCEEC--TTTTTTCTTCCEEECTT-SCCSBCCSGGGTTCTT
T ss_pred CEEECCCC-ccccccchhHHh---hCcCCCEEECCCC-CcCCcC--HHHhcCCCCCCEEECCC-CccCccChhhccCccc
Confidence 66666665 3332 444443 5667777777763 444442 25666777777777777 345555442 33567
Q ss_pred cceeeecCCCCCCCCCCC-CCC-CCCcEEeecCCc
Q 045261 158 LLDLCIFNCPNLTSLPKV-GLP-SSLLELTIFDCP 190 (227)
Q Consensus 158 L~~l~i~~c~~l~~~~~~-~~~-~~L~~L~l~~c~ 190 (227)
|++|+++++...+..+.. ..+ ++|++|++++++
T Consensus 225 L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 225 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred CCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 777777776544433322 223 477777777654
No 26
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.61 E-value=1.1e-14 Score=114.87 Aligned_cols=171 Identities=18% Similarity=0.237 Sum_probs=130.2
Q ss_pred CCCccEEEeccCCCCCcCC-cccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCc
Q 045261 4 PESISSVEIRRCEKLGALP-SDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTS 80 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~ 80 (227)
+++|+.|++++|. ++.++ ..+.++++|++|+++++. +..++.. ..+++|++|++ .++ .+. .+.+..++.+++
T Consensus 51 l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l-~~n-~l~-~~~~~~~~~l~~ 125 (276)
T 2z62_A 51 FPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVA-VET-NLA-SLENFPIGHLKT 125 (276)
T ss_dssp CTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEEC-TTS-CCC-CSTTCCCTTCTT
T ss_pred ccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCc-cCccChhhhcCCccccEEEC-CCC-Ccc-ccCchhcccCCC
Confidence 6899999999974 55555 578999999999999975 6656543 78899999999 764 454 444546889999
Q ss_pred cceEEeccCCCCCc--cCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCcc----EEeecCCCCCccCCCC-C
Q 045261 81 LRWLLIERCDESEC--FPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLR----RLLIQDCPNLTSLPKV-G 153 (227)
Q Consensus 81 L~~L~l~~~~~l~~--l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~----~L~l~~c~~l~~~~~~-~ 153 (227)
|++|+++++ .+.. +|..+. .+++|++|++++ +.+..++ ...+..+++|+ +|++++ +.+..++.. .
T Consensus 126 L~~L~l~~n-~l~~~~l~~~~~---~l~~L~~L~Ls~-N~l~~~~--~~~~~~l~~L~~l~l~L~ls~-n~l~~~~~~~~ 197 (276)
T 2z62_A 126 LKELNVAHN-LIQSFKLPEYFS---NLTNLEHLDLSS-NKIQSIY--CTDLRVLHQMPLLNLSLDLSL-NPMNFIQPGAF 197 (276)
T ss_dssp CCEEECCSS-CCCCCCCCGGGG---GCTTCCEEECCS-SCCCEEC--GGGGHHHHTCTTCCEEEECCS-SCCCEECTTSS
T ss_pred CCEEECcCC-ccceecCchhhc---cCCCCCEEECCC-CCCCcCC--HHHhhhhhhccccceeeecCC-CcccccCcccc
Confidence 999999997 5555 566665 689999999998 4666655 35666666666 899998 567777654 2
Q ss_pred CCCccceeeecCCCCCCCCCCC--CCCCCCcEEeecC
Q 045261 154 LPSSLLDLCIFNCPNLTSLPKV--GLPSSLLELTIFD 188 (227)
Q Consensus 154 ~~~~L~~l~i~~c~~l~~~~~~--~~~~~L~~L~l~~ 188 (227)
...+|++|+++++. ++.++.. ..+++|++|++++
T Consensus 198 ~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~ 233 (276)
T 2z62_A 198 KEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHT 233 (276)
T ss_dssp CSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCS
T ss_pred CCCcccEEECCCCc-eeecCHhHhcccccccEEEccC
Confidence 33489999999876 6677654 3478999999994
No 27
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.61 E-value=7.2e-16 Score=124.05 Aligned_cols=177 Identities=16% Similarity=0.139 Sum_probs=135.2
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCC-cc
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLT-SL 81 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~-~L 81 (227)
+++|++|++++|...+.+|..+.++++|++|+++++.....+|.. ..+++|++|++ ++ +.+.+.+ +..+..++ +|
T Consensus 100 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L-~~-N~l~~~~-p~~l~~l~~~L 176 (313)
T 1ogq_A 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITF-DG-NRISGAI-PDSYGSFSKLF 176 (313)
T ss_dssp CTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC-CS-SCCEEEC-CGGGGCCCTTC
T ss_pred CCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEEC-cC-CcccCcC-CHHHhhhhhcC
Confidence 689999999997655588999999999999999997533355655 78899999999 76 4554333 44677887 99
Q ss_pred ceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCcccee
Q 045261 82 RWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDL 161 (227)
Q Consensus 82 ~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l 161 (227)
++|+++++.....+|..+. .+. |+.|+++++.-....+ ..+..+++|++|+++++.--..++.....++|++|
T Consensus 177 ~~L~L~~N~l~~~~~~~~~---~l~-L~~L~Ls~N~l~~~~~---~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L 249 (313)
T 1ogq_A 177 TSMTISRNRLTGKIPPTFA---NLN-LAFVDLSRNMLEGDAS---VLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGL 249 (313)
T ss_dssp CEEECCSSEEEEECCGGGG---GCC-CSEEECCSSEEEECCG---GGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEE
T ss_pred cEEECcCCeeeccCChHHh---CCc-ccEEECcCCcccCcCC---HHHhcCCCCCEEECCCCceeeecCcccccCCCCEE
Confidence 9999999844446777665 444 9999999854333455 78889999999999996433344444567899999
Q ss_pred eecCCCCCCCCCCC-CCCCCCcEEeecCCc
Q 045261 162 CIFNCPNLTSLPKV-GLPSSLLELTIFDCP 190 (227)
Q Consensus 162 ~i~~c~~l~~~~~~-~~~~~L~~L~l~~c~ 190 (227)
+++++...+.+|.. ..+++|++|+++++.
T Consensus 250 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 279 (313)
T 1ogq_A 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279 (313)
T ss_dssp ECCSSCCEECCCGGGGGCTTCCEEECCSSE
T ss_pred ECcCCcccCcCChHHhcCcCCCEEECcCCc
Confidence 99998765566653 457899999999885
No 28
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.61 E-value=1e-13 Score=110.28 Aligned_cols=169 Identities=24% Similarity=0.217 Sum_probs=135.0
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCcc
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSL 81 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L 81 (227)
+++++.+++++ ..++++|..+. ++++.|+++++. +..++.. ..+++|+.|++ ++ +.++ .+.. .+.+++|
T Consensus 9 l~~l~~l~~~~-~~l~~ip~~~~--~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L-~~-n~l~-~~~~--~~~l~~L 79 (290)
T 1p9a_G 9 VASHLEVNCDK-RNLTALPPDLP--KDTTILHLSENL-LYTFSLATLMPYTRLTQLNL-DR-AELT-KLQV--DGTLPVL 79 (290)
T ss_dssp STTCCEEECTT-SCCSSCCSCCC--TTCCEEECTTSC-CSEEEGGGGTTCTTCCEEEC-TT-SCCC-EEEC--CSCCTTC
T ss_pred cCCccEEECCC-CCCCcCCCCCC--CCCCEEEcCCCc-CCccCHHHhhcCCCCCEEEC-CC-CccC-cccC--CCCCCcC
Confidence 67899999998 56888887654 789999999975 5555433 78899999999 76 4554 3332 3789999
Q ss_pred ceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCCccc
Q 045261 82 RWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPSSLL 159 (227)
Q Consensus 82 ~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~ 159 (227)
++|+++++ .+..+|..+. .+++|++|++++ +.+..++ ...+.++++|++|++++ +.+..++.. ...++|+
T Consensus 80 ~~L~Ls~N-~l~~l~~~~~---~l~~L~~L~l~~-N~l~~l~--~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~ 151 (290)
T 1p9a_G 80 GTLDLSHN-QLQSLPLLGQ---TLPALTVLDVSF-NRLTSLP--LGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLE 151 (290)
T ss_dssp CEEECCSS-CCSSCCCCTT---TCTTCCEEECCS-SCCCCCC--SSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCC
T ss_pred CEEECCCC-cCCcCchhhc---cCCCCCEEECCC-CcCcccC--HHHHcCCCCCCEEECCC-CCCCccChhhcccccCCC
Confidence 99999997 7888988765 789999999998 6777776 46789999999999999 578888765 3467999
Q ss_pred eeeecCCCCCCCCCCCC--CCCCCcEEeecCCc
Q 045261 160 DLCIFNCPNLTSLPKVG--LPSSLLELTIFDCP 190 (227)
Q Consensus 160 ~l~i~~c~~l~~~~~~~--~~~~L~~L~l~~c~ 190 (227)
+|+++++ .++.++... .+++|++|+++++.
T Consensus 152 ~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~ 183 (290)
T 1p9a_G 152 KLSLANN-NLTELPAGLLNGLENLDTLLLQENS 183 (290)
T ss_dssp EEECTTS-CCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCC-cCCccCHHHhcCcCCCCEEECCCCc
Confidence 9999986 467777643 47899999999874
No 29
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.61 E-value=8.7e-14 Score=108.31 Aligned_cols=170 Identities=24% Similarity=0.301 Sum_probs=128.7
Q ss_pred CccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCccce
Q 045261 6 SISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRW 83 (227)
Q Consensus 6 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~ 83 (227)
+.+.+++++ ..++.+|..+. ++++.|+++++. +..++.. ..+++|++|++ ++ +.+. .+.+..+..+++|++
T Consensus 15 ~~~~l~~~~-~~l~~~p~~~~--~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L-~~-n~l~-~~~~~~~~~l~~L~~ 87 (251)
T 3m19_A 15 GKKEVDCQG-KSLDSVPSGIP--ADTEKLDLQSTG-LATLSDATFRGLTKLTWLNL-DY-NQLQ-TLSAGVFDDLTELGT 87 (251)
T ss_dssp GGTEEECTT-CCCSSCCSCCC--TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEEC-TT-SCCC-CCCTTTTTTCTTCCE
T ss_pred CCeEEecCC-CCccccCCCCC--CCCCEEEccCCC-cCccCHhHhcCcccCCEEEC-CC-CcCC-ccCHhHhccCCcCCE
Confidence 467788888 46778887654 689999999875 5555543 77899999999 76 5565 445556788999999
Q ss_pred EEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCCcccee
Q 045261 84 LLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPSSLLDL 161 (227)
Q Consensus 84 L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~l 161 (227)
|+++++ .+..++.... ..+++|++|++++ +.+..++ ...+..+++|++|++++ +.+..++.. ...++|++|
T Consensus 88 L~L~~n-~l~~~~~~~~--~~l~~L~~L~L~~-N~l~~~~--~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L 160 (251)
T 3m19_A 88 LGLANN-QLASLPLGVF--DHLTQLDKLYLGG-NQLKSLP--SGVFDRLTKLKELRLNT-NQLQSIPAGAFDKLTNLQTL 160 (251)
T ss_dssp EECTTS-CCCCCCTTTT--TTCTTCCEEECCS-SCCCCCC--TTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEE
T ss_pred EECCCC-cccccChhHh--cccCCCCEEEcCC-CcCCCcC--hhHhccCCcccEEECcC-CcCCccCHHHcCcCcCCCEE
Confidence 999987 6667765432 2678999999998 5777777 45578899999999999 478887763 456789999
Q ss_pred eecCCCCCCCCCCC--CCCCCCcEEeecCCc
Q 045261 162 CIFNCPNLTSLPKV--GLPSSLLELTIFDCP 190 (227)
Q Consensus 162 ~i~~c~~l~~~~~~--~~~~~L~~L~l~~c~ 190 (227)
+++++. ++.++.. ..+++|++|++++++
T Consensus 161 ~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 161 SLSTNQ-LQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp ECCSSC-CSCCCTTTTTTCTTCCEEECCSCC
T ss_pred ECCCCc-CCccCHHHHhCCCCCCEEEeeCCc
Confidence 999864 5556543 347899999999865
No 30
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.61 E-value=2.1e-14 Score=116.75 Aligned_cols=58 Identities=17% Similarity=0.206 Sum_probs=32.1
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCccc
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKM 65 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~ 65 (227)
+++|+.|++++| .++.++ .+.++++|++|+++++. +..++....+++|+.|++ ++|..
T Consensus 87 l~~L~~L~L~~n-~i~~~~-~~~~l~~L~~L~l~~n~-i~~~~~~~~l~~L~~L~l-~~n~~ 144 (347)
T 4fmz_A 87 LVKLTNLYIGTN-KITDIS-ALQNLTNLRELYLNEDN-ISDISPLANLTKMYSLNL-GANHN 144 (347)
T ss_dssp CTTCCEEECCSS-CCCCCG-GGTTCTTCSEEECTTSC-CCCCGGGTTCTTCCEEEC-TTCTT
T ss_pred CCcCCEEEccCC-cccCch-HHcCCCcCCEEECcCCc-ccCchhhccCCceeEEEC-CCCCC
Confidence 466677777765 344443 35666666666666653 444433345555555555 55433
No 31
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.60 E-value=1.3e-14 Score=118.07 Aligned_cols=173 Identities=16% Similarity=0.164 Sum_probs=96.7
Q ss_pred CCCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccc
Q 045261 3 LPESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLR 82 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~ 82 (227)
-+++|++|++++|. +..++. +..+++|++|++++|.....++....+++|+.|++ .+|. +. ... .+..+++|+
T Consensus 108 ~l~~L~~L~l~~n~-i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l-~~~~-~~-~~~--~~~~l~~L~ 180 (347)
T 4fmz_A 108 NLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTV-TESK-VK-DVT--PIANLTDLY 180 (347)
T ss_dssp TCTTCSEEECTTSC-CCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEEC-CSSC-CC-CCG--GGGGCTTCS
T ss_pred CCCcCCEEECcCCc-ccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEe-cCCC-cC-Cch--hhccCCCCC
Confidence 35778888888853 555555 77778888888887765655554466677777777 5543 22 111 155666666
Q ss_pred eEEeccCCCCCccCccCc------------------CCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCC
Q 045261 83 WLLIERCDESECFPDGMM------------------GMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCP 144 (227)
Q Consensus 83 ~L~l~~~~~l~~l~~~~~------------------~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~ 144 (227)
+|++++| .+..++.... ....+++|++|++++ +.+..++ . +..+++|++|++++|
T Consensus 181 ~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~-n~l~~~~---~-~~~l~~L~~L~l~~n- 253 (347)
T 4fmz_A 181 SLSLNYN-QIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGN-NKITDLS---P-LANLSQLTWLEIGTN- 253 (347)
T ss_dssp EEECTTS-CCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCS-SCCCCCG---G-GTTCTTCCEEECCSS-
T ss_pred EEEccCC-cccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccC-CccCCCc---c-hhcCCCCCEEECCCC-
Confidence 6666665 3444332110 001345555555555 3344443 2 555666666666663
Q ss_pred CCccCCCCCCCCccceeeecCCCCCCCCCCCCCCCCCcEEeecCCc
Q 045261 145 NLTSLPKVGLPSSLLDLCIFNCPNLTSLPKVGLPSSLLELTIFDCP 190 (227)
Q Consensus 145 ~l~~~~~~~~~~~L~~l~i~~c~~l~~~~~~~~~~~L~~L~l~~c~ 190 (227)
.+..++.....++|++|++++| .++.++....+++|++|++++|.
T Consensus 254 ~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~n~ 298 (347)
T 4fmz_A 254 QISDINAVKDLTKLKMLNVGSN-QISDISVLNNLSQLNSLFLNNNQ 298 (347)
T ss_dssp CCCCCGGGTTCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC
T ss_pred ccCCChhHhcCCCcCEEEccCC-ccCCChhhcCCCCCCEEECcCCc
Confidence 4444443344556666666665 34444433345666666666664
No 32
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.60 E-value=2.5e-14 Score=118.23 Aligned_cols=81 Identities=19% Similarity=0.192 Sum_probs=39.4
Q ss_pred CCCccEEEeccCCCCCcC-CcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCc
Q 045261 4 PESISSVEIRRCEKLGAL-PSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTS 80 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~ 80 (227)
+++|++|++++|. ++.+ |..++++++|++|+++++. +..++.. ..+++|++|++ +++ .+. .+.+..++.+++
T Consensus 92 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L-~~n-~l~-~~~~~~~~~l~~ 166 (390)
T 3o6n_A 92 AHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSM-SNN-NLE-RIEDDTFQATTS 166 (390)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC-CSS-CCC-BCCTTTTSSCTT
T ss_pred CCCcCEEECCCCC-CCcCCHHHhcCCCCCCEEECCCCc-cCcCCHHHhcCCCCCcEEEC-CCC-ccC-ccChhhccCCCC
Confidence 3455555555543 2232 3344555555555555542 4444443 34555666665 442 232 223333555555
Q ss_pred cceEEeccC
Q 045261 81 LRWLLIERC 89 (227)
Q Consensus 81 L~~L~l~~~ 89 (227)
|++|+++++
T Consensus 167 L~~L~l~~n 175 (390)
T 3o6n_A 167 LQNLQLSSN 175 (390)
T ss_dssp CCEEECCSS
T ss_pred CCEEECCCC
Confidence 555555554
No 33
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.60 E-value=8.7e-15 Score=119.48 Aligned_cols=175 Identities=21% Similarity=0.227 Sum_probs=129.4
Q ss_pred CCCCccEEEeccCCCCCcCCc-ccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCC
Q 045261 3 LPESISSVEIRRCEKLGALPS-DMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLT 79 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~-~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~ 79 (227)
+.++|+.|+++++. ++.++. .+.++++|++|+++++. +..++.. ..+++|++|++ ++ +.++ .+++..++.++
T Consensus 50 ~~~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L-s~-n~l~-~~~~~~~~~l~ 124 (353)
T 2z80_A 50 LTEAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDL-SY-NYLS-NLSSSWFKPLS 124 (353)
T ss_dssp CCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEC-CS-SCCS-SCCHHHHTTCT
T ss_pred ccccCcEEECCCCc-CcccCHHHhccCCCCCEEECCCCc-cCccCHhhcCCCCCCCEEEC-CC-CcCC-cCCHhHhCCCc
Confidence 56789999999964 666664 78999999999999874 6666543 77899999999 66 4554 44554578899
Q ss_pred ccceEEeccCCCCCccCc--cCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccC-CCC-CCC
Q 045261 80 SLRWLLIERCDESECFPD--GMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSL-PKV-GLP 155 (227)
Q Consensus 80 ~L~~L~l~~~~~l~~l~~--~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~-~~~-~~~ 155 (227)
+|++|+++++ .++.+|. .+. .+++|++|++++++.+..++ ...+..+++|++|+++++. +..+ +.. ...
T Consensus 125 ~L~~L~L~~n-~l~~l~~~~~~~---~l~~L~~L~l~~n~~~~~~~--~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l 197 (353)
T 2z80_A 125 SLTFLNLLGN-PYKTLGETSLFS---HLTKLQILRVGNMDTFTKIQ--RKDFAGLTFLEELEIDASD-LQSYEPKSLKSI 197 (353)
T ss_dssp TCSEEECTTC-CCSSSCSSCSCT---TCTTCCEEEEEESSSCCEEC--TTTTTTCCEEEEEEEEETT-CCEECTTTTTTC
T ss_pred cCCEEECCCC-CCcccCchhhhc---cCCCCcEEECCCCccccccC--HHHccCCCCCCEEECCCCC-cCccCHHHHhcc
Confidence 9999999987 6777876 343 68899999999976777775 4678889999999999854 5444 332 446
Q ss_pred CccceeeecCCCCCCCCCCC--CCCCCCcEEeecCCc
Q 045261 156 SSLLDLCIFNCPNLTSLPKV--GLPSSLLELTIFDCP 190 (227)
Q Consensus 156 ~~L~~l~i~~c~~l~~~~~~--~~~~~L~~L~l~~c~ 190 (227)
++|++|+++++. ++.++.. ..+++|++|+++++.
T Consensus 198 ~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n~ 233 (353)
T 2z80_A 198 QNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDTD 233 (353)
T ss_dssp SEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESCB
T ss_pred ccCCeecCCCCc-cccchhhhhhhcccccEEECCCCc
Confidence 688888888765 3444432 125778888887764
No 34
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.59 E-value=7.9e-15 Score=128.71 Aligned_cols=173 Identities=15% Similarity=0.202 Sum_probs=110.4
Q ss_pred CCCccEEEeccCCCCCc------------------CCcccC--CCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccC
Q 045261 4 PESISSVEIRRCEKLGA------------------LPSDMH--KLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGED 62 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~------------------lp~~~~--~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~ 62 (227)
+++|+.|++++|. +.. +|+.++ ++++|++|++++|.....+|.. ..+++|+.|++ ++
T Consensus 205 l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L-s~ 282 (636)
T 4eco_A 205 LTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINV-AC 282 (636)
T ss_dssp CTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEEC-TT
T ss_pred ccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEEC-cC
Confidence 6789999999976 554 898888 9999999999998777777876 78899999999 77
Q ss_pred cccccccchhcccccC------CccceEEeccCCCCCccCc--cCcCCCCCCccceEEEecCCCcc-ccCCCCCCccCCC
Q 045261 63 MKMLYKGLVQWGLHRL------TSLRWLLIERCDESECFPD--GMMGMTLPTSLVHLNIVEFQKLK-NLSSSSSGFHSLT 133 (227)
Q Consensus 63 ~~~l~~~~~~~~~~~l------~~L~~L~l~~~~~l~~l~~--~~~~~~~~~~L~~L~l~~~~~l~-~l~~~~~~l~~l~ 133 (227)
+..+++...|..++.+ ++|++|+++++ .+..+|. .+. .+++|+.|+++++ .+. .+| .+..++
T Consensus 283 n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~~ip~~~~l~---~l~~L~~L~L~~N-~l~g~ip----~~~~l~ 353 (636)
T 4eco_A 283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLKTFPVETSLQ---KMKKLGMLECLYN-QLEGKLP----AFGSEI 353 (636)
T ss_dssp CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCSSCCCHHHHT---TCTTCCEEECCSC-CCEEECC----CCEEEE
T ss_pred CCCCccccchHHHHhhhccccCCCCCEEECCCC-cCCccCchhhhc---cCCCCCEEeCcCC-cCccchh----hhCCCC
Confidence 5535531223345554 78888888887 5557777 554 6677778777774 343 554 344555
Q ss_pred CccEEeecCCCCCccCCCC-CCCCc-cceeeecCCCCCCCCCCC-CC--CCCCcEEeecCC
Q 045261 134 SLRRLLIQDCPNLTSLPKV-GLPSS-LLDLCIFNCPNLTSLPKV-GL--PSSLLELTIFDC 189 (227)
Q Consensus 134 ~L~~L~l~~c~~l~~~~~~-~~~~~-L~~l~i~~c~~l~~~~~~-~~--~~~L~~L~l~~c 189 (227)
+|++|+++++ .+..+|.. ...++ |++|+++++. ++.+|.. .. +++|++|++++|
T Consensus 354 ~L~~L~L~~N-~l~~lp~~l~~l~~~L~~L~Ls~N~-l~~lp~~~~~~~l~~L~~L~Ls~N 412 (636)
T 4eco_A 354 KLASLNLAYN-QITEIPANFCGFTEQVENLSFAHNK-LKYIPNIFDAKSVSVMSAIDFSYN 412 (636)
T ss_dssp EESEEECCSS-EEEECCTTSEEECTTCCEEECCSSC-CSSCCSCCCTTCSSCEEEEECCSS
T ss_pred CCCEEECCCC-ccccccHhhhhhcccCcEEEccCCc-CcccchhhhhcccCccCEEECcCC
Confidence 5555555552 34444442 22334 5555555544 2244432 11 124555555544
No 35
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.59 E-value=7.6e-14 Score=108.66 Aligned_cols=155 Identities=19% Similarity=0.273 Sum_probs=123.5
Q ss_pred CCCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCc
Q 045261 3 LPESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTS 80 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~ 80 (227)
+.++++.|+++++...+..+..+.++++|++|+++++. +..++.. ..+++|++|++ ++ +.+. .+++..+..+++
T Consensus 33 ~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L-~~-n~l~-~~~~~~~~~l~~ 108 (251)
T 3m19_A 33 IPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGL-AN-NQLA-SLPLGVFDHLTQ 108 (251)
T ss_dssp CCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEEC-TT-SCCC-CCCTTTTTTCTT
T ss_pred CCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEEC-CC-Cccc-ccChhHhcccCC
Confidence 46789999999975444344678999999999999974 6666654 77899999999 66 5565 555666889999
Q ss_pred cceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCCcc
Q 045261 81 LRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPSSL 158 (227)
Q Consensus 81 L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L 158 (227)
|++|+++++ .++.++.... ..+++|+.|++++ +.+..++ ...+..+++|++|++++ +.+..++.. ...++|
T Consensus 109 L~~L~L~~N-~l~~~~~~~~--~~l~~L~~L~Ls~-N~l~~~~--~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L 181 (251)
T 3m19_A 109 LDKLYLGGN-QLKSLPSGVF--DRLTKLKELRLNT-NQLQSIP--AGAFDKLTNLQTLSLST-NQLQSVPHGAFDRLGKL 181 (251)
T ss_dssp CCEEECCSS-CCCCCCTTTT--TTCTTCCEEECCS-SCCCCCC--TTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTC
T ss_pred CCEEEcCCC-cCCCcChhHh--ccCCcccEEECcC-CcCCccC--HHHcCcCcCCCEEECCC-CcCCccCHHHHhCCCCC
Confidence 999999997 7778876542 2689999999998 5788887 45788999999999999 567777764 346789
Q ss_pred ceeeecCCCC
Q 045261 159 LDLCIFNCPN 168 (227)
Q Consensus 159 ~~l~i~~c~~ 168 (227)
++|++++++.
T Consensus 182 ~~L~l~~N~~ 191 (251)
T 3m19_A 182 QTITLFGNQF 191 (251)
T ss_dssp CEEECCSCCB
T ss_pred CEEEeeCCce
Confidence 9999998764
No 36
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.59 E-value=2.6e-14 Score=114.32 Aligned_cols=175 Identities=21% Similarity=0.195 Sum_probs=88.6
Q ss_pred CCCCccEEEeccCCCCCcCCcc-cCCCCCcceEeecCCCCCccc---CCC-CCCCCcceeEeccCcccccccchhccccc
Q 045261 3 LPESISSVEIRRCEKLGALPSD-MHKLNSLQDLDIRECPSIVSF---PEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHR 77 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~l~~c~~l~~~---~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~ 77 (227)
++++|+.|+++++ .++.+|.. +.++++|++|+++++. +..+ +.. ..+++|++|++ +++ .+. .+ +..+..
T Consensus 26 ~~~~l~~L~L~~n-~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L-s~n-~i~-~l-~~~~~~ 99 (306)
T 2z66_A 26 IPSSATRLELESN-KLQSLPHGVFDKLTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDL-SFN-GVI-TM-SSNFLG 99 (306)
T ss_dssp CCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEEC-CSC-SEE-EE-EEEEET
T ss_pred CCCCCCEEECCCC-ccCccCHhHhhccccCCEEECCCCc-cCcccCcccccccccccCEEEC-CCC-ccc-cC-hhhcCC
Confidence 5578999999986 46677754 6888889999988864 4332 111 34566666666 543 222 12 122444
Q ss_pred CCccceEEeccCCCCCccCc--cCcC---------------------CCCCCccceEEEecCCCccc--cCCCCCCccCC
Q 045261 78 LTSLRWLLIERCDESECFPD--GMMG---------------------MTLPTSLVHLNIVEFQKLKN--LSSSSSGFHSL 132 (227)
Q Consensus 78 l~~L~~L~l~~~~~l~~l~~--~~~~---------------------~~~~~~L~~L~l~~~~~l~~--l~~~~~~l~~l 132 (227)
+++|++|+++++ .+..++. .+.. ...+++|++|+++++ .+.. +| ..+..+
T Consensus 100 l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~---~~~~~l 174 (306)
T 2z66_A 100 LEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN-SFQENFLP---DIFTEL 174 (306)
T ss_dssp CTTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTC-EEGGGEEC---SCCTTC
T ss_pred CCCCCEEECCCC-cccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCC-ccccccch---hHHhhC
Confidence 555555555543 3333332 1210 013445555555442 2222 33 445555
Q ss_pred CCccEEeecCCCCCccCCCC--CCCCccceeeecCCCCCCCCCC--CCCCCCCcEEeecCCc
Q 045261 133 TSLRRLLIQDCPNLTSLPKV--GLPSSLLDLCIFNCPNLTSLPK--VGLPSSLLELTIFDCP 190 (227)
Q Consensus 133 ~~L~~L~l~~c~~l~~~~~~--~~~~~L~~l~i~~c~~l~~~~~--~~~~~~L~~L~l~~c~ 190 (227)
++|++|+++++ .+..++.. ...++|++|+++++. ++.++. ...+++|++|+++++.
T Consensus 175 ~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~N~ 234 (306)
T 2z66_A 175 RNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNN-FFSLDTFPYKCLNSLQVLDYSLNH 234 (306)
T ss_dssp TTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CSBCCSGGGTTCTTCCEEECTTSC
T ss_pred cCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECCCCc-cCccChhhccCcccCCEeECCCCC
Confidence 55555555553 33333221 234455666665543 333332 1234566666666553
No 37
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.59 E-value=3.1e-14 Score=124.09 Aligned_cols=81 Identities=19% Similarity=0.192 Sum_probs=39.2
Q ss_pred CCCccEEEeccCCCCCcCC-cccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCc
Q 045261 4 PESISSVEIRRCEKLGALP-SDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTS 80 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~ 80 (227)
+++|+.|++++|. ++.++ ..++++++|++|+++++. +..+|.. ..+++|+.|++ +++ .+. .+.+..++.+++
T Consensus 98 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~~~~~l~~L~~L~L-s~N-~l~-~~~~~~~~~l~~ 172 (597)
T 3oja_B 98 AHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSM-SNN-NLE-RIEDDTFQATTS 172 (597)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC-CSS-CCC-BCCTTTTTTCTT
T ss_pred CCCCCEEECCCCc-CCCCCHHHHcCCCCCCEEEeeCCC-CCCCCHHHhccCCCCCEEEe-eCC-cCC-CCChhhhhcCCc
Confidence 3455555555543 23332 334555555555555542 4444443 34555666655 442 332 223334555555
Q ss_pred cceEEeccC
Q 045261 81 LRWLLIERC 89 (227)
Q Consensus 81 L~~L~l~~~ 89 (227)
|++|+++++
T Consensus 173 L~~L~L~~N 181 (597)
T 3oja_B 173 LQNLQLSSN 181 (597)
T ss_dssp CCEEECTTS
T ss_pred CcEEECcCC
Confidence 555555554
No 38
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.58 E-value=1.8e-14 Score=117.57 Aligned_cols=150 Identities=17% Similarity=0.154 Sum_probs=92.9
Q ss_pred CCCccEEEeccCCCCCcC-CcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchh-cccccCC
Q 045261 4 PESISSVEIRRCEKLGAL-PSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQ-WGLHRLT 79 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~-~~~~~l~ 79 (227)
+++|+.|++++|. ++.+ +..+.++++|++|+++++. +..++.. ..+++|++|++ ++ +.+. .++. ..+..++
T Consensus 75 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L-~~-n~l~-~l~~~~~~~~l~ 149 (353)
T 2z80_A 75 CVNLQALVLTSNG-INTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLSSLTFLNL-LG-NPYK-TLGETSLFSHLT 149 (353)
T ss_dssp CTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CSSCCHHHHTTCTTCSEEEC-TT-CCCS-SSCSSCSCTTCT
T ss_pred CCCCCEEECCCCc-cCccCHhhcCCCCCCCEEECCCCc-CCcCCHhHhCCCccCCEEEC-CC-CCCc-ccCchhhhccCC
Confidence 5788888888864 4444 4567888888888888763 5556553 56788888888 65 3444 3333 3567788
Q ss_pred ccceEEeccCCCCCccCc-cCcCCCCCCccceEEEecCCCcccc-CCCCCCccCCCCccEEeecCCCCCccCCCC--CCC
Q 045261 80 SLRWLLIERCDESECFPD-GMMGMTLPTSLVHLNIVEFQKLKNL-SSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLP 155 (227)
Q Consensus 80 ~L~~L~l~~~~~l~~l~~-~~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~ 155 (227)
+|++|+++++..+..++. .+. .+++|++|+++++. +..+ | ..+..+++|++|+++++ .+..++.. ...
T Consensus 150 ~L~~L~l~~n~~~~~~~~~~~~---~l~~L~~L~l~~n~-l~~~~~---~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~~ 221 (353)
T 2z80_A 150 KLQILRVGNMDTFTKIQRKDFA---GLTFLEELEIDASD-LQSYEP---KSLKSIQNVSHLILHMK-QHILLLEIFVDVT 221 (353)
T ss_dssp TCCEEEEEESSSCCEECTTTTT---TCCEEEEEEEEETT-CCEECT---TTTTTCSEEEEEEEECS-CSTTHHHHHHHHT
T ss_pred CCcEEECCCCccccccCHHHcc---CCCCCCEEECCCCC-cCccCH---HHHhccccCCeecCCCC-ccccchhhhhhhc
Confidence 888888887755666543 332 56778888887743 4443 4 66666677777776663 33333321 113
Q ss_pred CccceeeecCC
Q 045261 156 SSLLDLCIFNC 166 (227)
Q Consensus 156 ~~L~~l~i~~c 166 (227)
++|++|+++++
T Consensus 222 ~~L~~L~L~~n 232 (353)
T 2z80_A 222 SSVECLELRDT 232 (353)
T ss_dssp TTEEEEEEESC
T ss_pred ccccEEECCCC
Confidence 44445544443
No 39
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.58 E-value=1.5e-13 Score=119.59 Aligned_cols=173 Identities=16% Similarity=0.121 Sum_probs=133.1
Q ss_pred CccEEEeccCCCCCcCC-cccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCccce
Q 045261 6 SISSVEIRRCEKLGALP-SDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRW 83 (227)
Q Consensus 6 ~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~ 83 (227)
+|+.|+++++. ++.++ ..++++++|++|+++++. +..+|.. ..+++|++|++ +++ .+. ...+..+..+++|++
T Consensus 255 ~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp~~l~~l~~L~~L~l-~~n-~l~-~~~~~~~~~l~~L~~ 329 (606)
T 3t6q_A 255 SVESINLQKHY-FFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVL-SAN-KFE-NLCQISASNFPSLTH 329 (606)
T ss_dssp EEEEEECTTCC-CSSCCTTTTTTCTTCSEEECTTSC-CSCCCSSCCSCTTCCEEEC-TTC-CCS-BGGGGCGGGCTTCSE
T ss_pred ceeEEEeecCc-cCccCHHHhccccCCCEEeccCCc-cCCCChhhcccccCCEEEC-ccC-CcC-cCchhhhhccCcCCE
Confidence 78999999964 55555 568999999999999974 7788877 78899999999 774 454 444557889999999
Q ss_pred EEeccCCCCCccCccCcCCCCCCccceEEEecCCCcccc---CCCCCCccCCCCccEEeecCCCCCccCCCC--CCCCcc
Q 045261 84 LLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNL---SSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPSSL 158 (227)
Q Consensus 84 L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l---~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L 158 (227)
|+++++.....++.... ..+++|++|+++++ .+..+ + ..+..+++|++|+++++. +..++.. ...++|
T Consensus 330 L~l~~n~~~~~~~~~~~--~~l~~L~~L~l~~n-~l~~~~~~~---~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L 402 (606)
T 3t6q_A 330 LSIKGNTKRLELGTGCL--ENLENLRELDLSHD-DIETSDCCN---LQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQL 402 (606)
T ss_dssp EECCSCSSCCBCCSSTT--TTCTTCCEEECCSS-CCCEEEEST---TTTTTCTTCCEEECCSCS-CEEECTTTTTTCTTC
T ss_pred EECCCCCcccccchhhh--hccCcCCEEECCCC-ccccccCcc---hhcccCCCCCEEECCCCc-CCcCCHHHhcCCccC
Confidence 99999855556766532 27899999999985 44443 5 678899999999999964 5444332 456899
Q ss_pred ceeeecCCCCCCCCCC--CCCCCCCcEEeecCCc
Q 045261 159 LDLCIFNCPNLTSLPK--VGLPSSLLELTIFDCP 190 (227)
Q Consensus 159 ~~l~i~~c~~l~~~~~--~~~~~~L~~L~l~~c~ 190 (227)
++|+++++......+. ...+++|++|++++|.
T Consensus 403 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 436 (606)
T 3t6q_A 403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436 (606)
T ss_dssp SEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC
T ss_pred CeEECCCCcCCCcccchhhhCcccCCEEECCCCc
Confidence 9999999875544443 3457999999999875
No 40
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.58 E-value=1.8e-14 Score=115.57 Aligned_cols=167 Identities=17% Similarity=0.222 Sum_probs=134.6
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccce
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRW 83 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~ 83 (227)
+++|+.|++++| .+..++ .+..+++|++|++++|. +..++....+++|+.|++ +++. +. .+ + .+..+++|++
T Consensus 40 l~~L~~L~l~~~-~i~~l~-~~~~l~~L~~L~L~~n~-i~~~~~~~~l~~L~~L~L-~~n~-l~-~~-~-~~~~l~~L~~ 111 (308)
T 1h6u_A 40 LDGITTLSAFGT-GVTTIE-GVQYLNNLIGLELKDNQ-ITDLAPLKNLTKITELEL-SGNP-LK-NV-S-AIAGLQSIKT 111 (308)
T ss_dssp HHTCCEEECTTS-CCCCCT-TGGGCTTCCEEECCSSC-CCCCGGGTTCCSCCEEEC-CSCC-CS-CC-G-GGTTCTTCCE
T ss_pred cCCcCEEEeeCC-CccCch-hhhccCCCCEEEccCCc-CCCChhHccCCCCCEEEc-cCCc-CC-Cc-h-hhcCCCCCCE
Confidence 468999999996 567777 58899999999999974 666665678899999999 7754 54 32 2 5888999999
Q ss_pred EEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccceeee
Q 045261 84 LLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCI 163 (227)
Q Consensus 84 L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~i 163 (227)
|+++++ .+..++. +. .+++|++|++++ +.+..++ . +..+++|++|++++| .+..++.....++|++|++
T Consensus 112 L~l~~n-~l~~~~~-l~---~l~~L~~L~l~~-n~l~~~~---~-l~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l 180 (308)
T 1h6u_A 112 LDLTST-QITDVTP-LA---GLSNLQVLYLDL-NQITNIS---P-LAGLTNLQYLSIGNA-QVSDLTPLANLSKLTTLKA 180 (308)
T ss_dssp EECTTS-CCCCCGG-GT---TCTTCCEEECCS-SCCCCCG---G-GGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEEC
T ss_pred EECCCC-CCCCchh-hc---CCCCCCEEECCC-CccCcCc---c-ccCCCCccEEEccCC-cCCCChhhcCCCCCCEEEC
Confidence 999998 6777765 33 789999999998 5777776 3 889999999999995 6777766556789999999
Q ss_pred cCCCCCCCCCCCCCCCCCcEEeecCCc
Q 045261 164 FNCPNLTSLPKVGLPSSLLELTIFDCP 190 (227)
Q Consensus 164 ~~c~~l~~~~~~~~~~~L~~L~l~~c~ 190 (227)
+++. ++.++....+++|++|++++|.
T Consensus 181 ~~n~-l~~~~~l~~l~~L~~L~L~~N~ 206 (308)
T 1h6u_A 181 DDNK-ISDISPLASLPNLIEVHLKNNQ 206 (308)
T ss_dssp CSSC-CCCCGGGGGCTTCCEEECTTSC
T ss_pred CCCc-cCcChhhcCCCCCCEEEccCCc
Confidence 9864 5666655567899999999874
No 41
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.58 E-value=9.3e-15 Score=109.77 Aligned_cols=151 Identities=15% Similarity=0.129 Sum_probs=83.5
Q ss_pred CCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCc-cCccCcCCCC
Q 045261 26 HKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESEC-FPDGMMGMTL 104 (227)
Q Consensus 26 ~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~-l~~~~~~~~~ 104 (227)
..+++|++|+++++. +..++....+++|+.|++ ++| .+. .. ..+..+++|++|+++++ .+.. .+..+. .
T Consensus 41 ~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~l-~~n-~~~-~~--~~l~~l~~L~~L~l~~n-~l~~~~~~~l~---~ 110 (197)
T 4ezg_A 41 AQMNSLTYITLANIN-VTDLTGIEYAHNIKDLTI-NNI-HAT-NY--NPISGLSNLERLRIMGK-DVTSDKIPNLS---G 110 (197)
T ss_dssp HHHHTCCEEEEESSC-CSCCTTGGGCTTCSEEEE-ESC-CCS-CC--GGGTTCTTCCEEEEECT-TCBGGGSCCCT---T
T ss_pred hhcCCccEEeccCCC-ccChHHHhcCCCCCEEEc-cCC-CCC-cc--hhhhcCCCCCEEEeECC-ccCcccChhhc---C
Confidence 445566666666643 445553355666666666 554 332 11 13556666666666665 3332 344443 4
Q ss_pred CCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccceeeecCCCCCCCCCCCCCCCCCcEE
Q 045261 105 PTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCIFNCPNLTSLPKVGLPSSLLEL 184 (227)
Q Consensus 105 ~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~i~~c~~l~~~~~~~~~~~L~~L 184 (227)
+++|++|+++++.-....+ ..+..+++|++|++++|..++.++....+++|++|++++|. +++++....+++|++|
T Consensus 111 l~~L~~L~Ls~n~i~~~~~---~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~-i~~~~~l~~l~~L~~L 186 (197)
T 4ezg_A 111 LTSLTLLDISHSAHDDSIL---TKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG-VHDYRGIEDFPKLNQL 186 (197)
T ss_dssp CTTCCEEECCSSBCBGGGH---HHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC-CCCCTTGGGCSSCCEE
T ss_pred CCCCCEEEecCCccCcHhH---HHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC-CcChHHhccCCCCCEE
Confidence 5666666666633222233 45566666666666665445555543445666666666654 4444443446777777
Q ss_pred eecCCc
Q 045261 185 TIFDCP 190 (227)
Q Consensus 185 ~l~~c~ 190 (227)
++++.+
T Consensus 187 ~l~~N~ 192 (197)
T 4ezg_A 187 YAFSQT 192 (197)
T ss_dssp EECBC-
T ss_pred EeeCcc
Confidence 777643
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.58 E-value=9.4e-14 Score=112.27 Aligned_cols=171 Identities=15% Similarity=0.255 Sum_probs=95.9
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhccccc------
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHR------ 77 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~------ 77 (227)
+++|++|++++|...+..|..+.++++|++|+++++. +..+|.. ..++|++|++ +++ .+. .+.+..+..
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~l~~~-~~~~L~~L~l-~~n-~l~-~~~~~~~~~l~~L~~ 149 (330)
T 1xku_A 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ-LKELPEK-MPKTLQELRV-HEN-EIT-KVRKSVFNGLNQMIV 149 (330)
T ss_dssp CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSC-CSBCCSS-CCTTCCEEEC-CSS-CCC-BBCHHHHTTCTTCCE
T ss_pred CCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCc-CCccChh-hcccccEEEC-CCC-ccc-ccCHhHhcCCccccE
Confidence 4566666666643322235566666666666666643 4444432 2244555554 332 222 122222344
Q ss_pred --------------------CCccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccE
Q 045261 78 --------------------LTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRR 137 (227)
Q Consensus 78 --------------------l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~ 137 (227)
+++|++|+++++ .+..+|... +++|++|+++++ .+..++ ...+..+++|++
T Consensus 150 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~l~~~~-----~~~L~~L~l~~n-~l~~~~--~~~~~~l~~L~~ 220 (330)
T 1xku_A 150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGL-----PPSLTELHLDGN-KITKVD--AASLKGLNNLAK 220 (330)
T ss_dssp EECCSSCCCGGGBCTTGGGGCTTCCEEECCSS-CCCSCCSSC-----CTTCSEEECTTS-CCCEEC--TGGGTTCTTCCE
T ss_pred EECCCCcCCccCcChhhccCCCCcCEEECCCC-ccccCCccc-----cccCCEEECCCC-cCCccC--HHHhcCCCCCCE
Confidence 444555555443 344444332 356777777663 444443 266778888888
Q ss_pred EeecCCCCCccCCCC--CCCCccceeeecCCCCCCCCCCC-CCCCCCcEEeecCCc
Q 045261 138 LLIQDCPNLTSLPKV--GLPSSLLDLCIFNCPNLTSLPKV-GLPSSLLELTIFDCP 190 (227)
Q Consensus 138 L~l~~c~~l~~~~~~--~~~~~L~~l~i~~c~~l~~~~~~-~~~~~L~~L~l~~c~ 190 (227)
|+++++ .+..++.. ...++|++|+++++. ++.+|.. ..+++|++|+++++.
T Consensus 221 L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~ 274 (330)
T 1xku_A 221 LGLSFN-SISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNN 274 (330)
T ss_dssp EECCSS-CCCEECTTTGGGSTTCCEEECCSSC-CSSCCTTTTTCSSCCEEECCSSC
T ss_pred EECCCC-cCceeChhhccCCCCCCEEECCCCc-CccCChhhccCCCcCEEECCCCc
Confidence 888884 45555442 345688888888864 5566653 456888888888764
No 43
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.58 E-value=2.3e-14 Score=129.24 Aligned_cols=174 Identities=16% Similarity=0.182 Sum_probs=106.9
Q ss_pred CCCccEEEeccCCCCC-----------------cCCcccC--CCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCc
Q 045261 4 PESISSVEIRRCEKLG-----------------ALPSDMH--KLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDM 63 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~-----------------~lp~~~~--~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~ 63 (227)
+++|+.|++++|...+ .+|..++ ++++|++|++++|.....+|.. ..+++|+.|++ +++
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~L-s~N 525 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNI-ACN 525 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEEC-TTC
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEEC-cCC
Confidence 5678888888865433 1787777 8888888888887766677755 67788888888 665
Q ss_pred ccccc-cchhccccc-------CCccceEEeccCCCCCccCc--cCcCCCCCCccceEEEecCCCccccCCCCCCccCCC
Q 045261 64 KMLYK-GLVQWGLHR-------LTSLRWLLIERCDESECFPD--GMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLT 133 (227)
Q Consensus 64 ~~l~~-~~~~~~~~~-------l~~L~~L~l~~~~~l~~l~~--~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~ 133 (227)
..+++ .+ |..++. +++|++|+++++ .+..+|. .+. .+++|+.|+++++ .+..+| .+..++
T Consensus 526 ~~lsg~~i-P~~i~~L~~~~~~l~~L~~L~Ls~N-~L~~ip~~~~l~---~L~~L~~L~Ls~N-~l~~lp----~~~~L~ 595 (876)
T 4ecn_A 526 RGISAAQL-KADWTRLADDEDTGPKIQIFYMGYN-NLEEFPASASLQ---KMVKLGLLDCVHN-KVRHLE----AFGTNV 595 (876)
T ss_dssp TTSCHHHH-HHHHHHHHHCTTTTTTCCEEECCSS-CCCBCCCHHHHT---TCTTCCEEECTTS-CCCBCC----CCCTTS
T ss_pred CCcccccc-hHHHHhhhhcccccCCccEEEeeCC-cCCccCChhhhh---cCCCCCEEECCCC-Ccccch----hhcCCC
Confidence 43543 22 222333 347777777776 4556776 554 5667777777763 444554 456666
Q ss_pred CccEEeecCCCCCccCCCC-CCCCc-cceeeecCCCCCCCCCCC-CCC--CCCcEEeecCCc
Q 045261 134 SLRRLLIQDCPNLTSLPKV-GLPSS-LLDLCIFNCPNLTSLPKV-GLP--SSLLELTIFDCP 190 (227)
Q Consensus 134 ~L~~L~l~~c~~l~~~~~~-~~~~~-L~~l~i~~c~~l~~~~~~-~~~--~~L~~L~l~~c~ 190 (227)
+|++|+++++ .+..+|.. ...++ |++|+++++. ++.+|.. ... ++|+.|++++|.
T Consensus 596 ~L~~L~Ls~N-~l~~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N~ 655 (876)
T 4ecn_A 596 KLTDLKLDYN-QIEEIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYNK 655 (876)
T ss_dssp EESEEECCSS-CCSCCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSSC
T ss_pred cceEEECcCC-ccccchHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCCc
Confidence 7777777663 34455543 23344 6666666654 3355532 112 236666666553
No 44
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.57 E-value=1.8e-14 Score=114.71 Aligned_cols=167 Identities=16% Similarity=0.213 Sum_probs=130.5
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccce
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRW 83 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~ 83 (227)
+++|+.|++++| .+..++. +..+++|++|+++++. +..++....+++|+.|++ ++ +.+. .+ + .+..+++|++
T Consensus 45 l~~L~~L~l~~~-~i~~~~~-~~~l~~L~~L~L~~n~-l~~~~~l~~l~~L~~L~l-~~-n~l~-~~-~-~l~~l~~L~~ 116 (291)
T 1h6t_A 45 LNSIDQIIANNS-DIKSVQG-IQYLPNVTKLFLNGNK-LTDIKPLANLKNLGWLFL-DE-NKVK-DL-S-SLKDLKKLKS 116 (291)
T ss_dssp HHTCCEEECTTS-CCCCCTT-GGGCTTCCEEECCSSC-CCCCGGGTTCTTCCEEEC-CS-SCCC-CG-G-GGTTCTTCCE
T ss_pred cCcccEEEccCC-CcccChh-HhcCCCCCEEEccCCc-cCCCcccccCCCCCEEEC-CC-CcCC-CC-h-hhccCCCCCE
Confidence 457899999996 5667754 8889999999999874 666655678899999999 76 4454 32 2 4888999999
Q ss_pred EEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccceeee
Q 045261 84 LLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCI 163 (227)
Q Consensus 84 L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~i 163 (227)
|++++| .+..++. +. .+++|+.|++++ +.+..+ ..+..+++|++|++++| .+..++.....++|++|++
T Consensus 117 L~L~~n-~i~~~~~-l~---~l~~L~~L~l~~-n~l~~~----~~l~~l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~L 185 (291)
T 1h6t_A 117 LSLEHN-GISDING-LV---HLPQLESLYLGN-NKITDI----TVLSRLTKLDTLSLEDN-QISDIVPLAGLTKLQNLYL 185 (291)
T ss_dssp EECTTS-CCCCCGG-GG---GCTTCCEEECCS-SCCCCC----GGGGGCTTCSEEECCSS-CCCCCGGGTTCTTCCEEEC
T ss_pred EECCCC-cCCCChh-hc---CCCCCCEEEccC-CcCCcc----hhhccCCCCCEEEccCC-ccccchhhcCCCccCEEEC
Confidence 999997 6777653 32 688999999998 566665 36788999999999995 6777765566789999999
Q ss_pred cCCCCCCCCCCCCCCCCCcEEeecCCc
Q 045261 164 FNCPNLTSLPKVGLPSSLLELTIFDCP 190 (227)
Q Consensus 164 ~~c~~l~~~~~~~~~~~L~~L~l~~c~ 190 (227)
+++ .++.++....+++|+.|++++++
T Consensus 186 ~~N-~i~~l~~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 186 SKN-HISDLRALAGLKNLDVLELFSQE 211 (291)
T ss_dssp CSS-CCCBCGGGTTCTTCSEEEEEEEE
T ss_pred CCC-cCCCChhhccCCCCCEEECcCCc
Confidence 986 46667665668899999999864
No 45
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.57 E-value=1.2e-13 Score=116.13 Aligned_cols=130 Identities=17% Similarity=0.209 Sum_probs=80.6
Q ss_pred CCCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCc
Q 045261 3 LPESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTS 80 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~ 80 (227)
+.++|++|+++++......|..+.++++|++|+++++.....++.. ..+++|++|++ +++ .+. ...+..++.+++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~L-s~n-~l~-~~~~~~~~~l~~ 104 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKL-DYN-QFL-QLETGAFNGLAN 104 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEEC-TTC-TTC-EECTTTTTTCTT
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeC-CCC-ccC-ccChhhccCccc
Confidence 3467888888886433334667788888888888877544455433 66778888888 663 343 333445777777
Q ss_pred cceEEeccCCCCCc-cCcc--CcCCCCCCccceEEEecCCCcccc-CCCCCC-ccCCCCccEEeecCC
Q 045261 81 LRWLLIERCDESEC-FPDG--MMGMTLPTSLVHLNIVEFQKLKNL-SSSSSG-FHSLTSLRRLLIQDC 143 (227)
Q Consensus 81 L~~L~l~~~~~l~~-l~~~--~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~-l~~l~~L~~L~l~~c 143 (227)
|++|++++| .+.. ++.. +. .+++|++|+++++ .+..+ | .. +.++++|++|+++++
T Consensus 105 L~~L~L~~n-~l~~~~~~~~~~~---~l~~L~~L~L~~n-~l~~~~~---~~~~~~l~~L~~L~L~~n 164 (455)
T 3v47_A 105 LEVLTLTQC-NLDGAVLSGNFFK---PLTSLEMLVLRDN-NIKKIQP---ASFFLNMRRFHVLDLTFN 164 (455)
T ss_dssp CCEEECTTS-CCBTHHHHSSTTT---TCTTCCEEECCSS-BCCSCCC---CGGGGGCTTCCEEECTTC
T ss_pred CCEEeCCCC-CCCccccCccccc---CcccCCEEECCCC-ccCccCc---ccccCCCCcccEEeCCCC
Confidence 778777776 3332 2222 32 5667777777763 34443 3 33 566777777777664
No 46
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.57 E-value=1.2e-13 Score=108.73 Aligned_cols=167 Identities=21% Similarity=0.267 Sum_probs=129.5
Q ss_pred CCCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCc
Q 045261 3 LPESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTS 80 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~ 80 (227)
.+++|+.|++++|. +..++ .+..+++|++|+++++. +..++.. ..+++|++|++ +++ .+. .+.+..++.+++
T Consensus 61 ~l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L-~~n-~l~-~~~~~~~~~l~~ 134 (272)
T 3rfs_A 61 YLPNVRYLALGGNK-LHDIS-ALKELTNLTYLILTGNQ-LQSLPNGVFDKLTNLKELVL-VEN-QLQ-SLPDGVFDKLTN 134 (272)
T ss_dssp GCTTCCEEECTTSC-CCCCG-GGTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEEC-TTS-CCC-CCCTTTTTTCTT
T ss_pred cCCCCcEEECCCCC-CCCch-hhcCCCCCCEEECCCCc-cCccChhHhcCCcCCCEEEC-CCC-cCC-ccCHHHhccCCC
Confidence 47899999999975 55554 68999999999999974 6666654 67899999999 774 455 455556889999
Q ss_pred cceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCCcc
Q 045261 81 LRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPSSL 158 (227)
Q Consensus 81 L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L 158 (227)
|++|++++| .+..++.... ..+++|+.|+++++ .+..++ ...+..+++|++|+++++ .+..++.. ...++|
T Consensus 135 L~~L~L~~n-~l~~~~~~~~--~~l~~L~~L~l~~n-~l~~~~--~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L 207 (272)
T 3rfs_A 135 LTYLNLAHN-QLQSLPKGVF--DKLTNLTELDLSYN-QLQSLP--EGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSL 207 (272)
T ss_dssp CCEEECCSS-CCCCCCTTTT--TTCTTCCEEECCSS-CCCCCC--TTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTC
T ss_pred CCEEECCCC-ccCccCHHHh--ccCccCCEEECCCC-CcCccC--HHHhcCCccCCEEECCCC-cCCccCHHHHhCCcCC
Confidence 999999998 7777776542 26899999999995 677776 356789999999999995 57777653 457899
Q ss_pred ceeeecCCCCCCCCCCCCCCCCCcEEeecC
Q 045261 159 LDLCIFNCPNLTSLPKVGLPSSLLELTIFD 188 (227)
Q Consensus 159 ~~l~i~~c~~l~~~~~~~~~~~L~~L~l~~ 188 (227)
++|++++++.. +.+++|+.|+++.
T Consensus 208 ~~L~l~~N~~~------~~~~~l~~l~~~~ 231 (272)
T 3rfs_A 208 QYIWLHDNPWD------CTCPGIRYLSEWI 231 (272)
T ss_dssp CEEECCSSCBC------CCTTTTHHHHHHH
T ss_pred CEEEccCCCcc------ccCcHHHHHHHHH
Confidence 99999987643 2345677776664
No 47
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.57 E-value=6.5e-14 Score=120.50 Aligned_cols=173 Identities=24% Similarity=0.295 Sum_probs=110.8
Q ss_pred CCCccEEEeccCCCCCcCCccc-CCCCCcceEeecCCCCCcccC---C-CCCCCCcceeEeccCcccccccchh--cccc
Q 045261 4 PESISSVEIRRCEKLGALPSDM-HKLNSLQDLDIRECPSIVSFP---E-EGFPTNLTSLAIGEDMKMLYKGLVQ--WGLH 76 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~-~~l~~L~~L~l~~c~~l~~~~---~-~~~l~~L~~L~l~~~~~~l~~~~~~--~~~~ 76 (227)
+++|+.|++++| .++.+|..+ +++++|++|+++++.....++ . .+.+++|+.|++ +++ .++ .+.. ..+.
T Consensus 309 ~~~L~~L~l~~n-~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~L-s~N-~l~-~~~~~~~~~~ 384 (549)
T 2z81_A 309 LEKVKRITVENS-KVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVL-SQN-HLR-SMQKTGEILL 384 (549)
T ss_dssp STTCCEEEEESS-CCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEEC-TTS-CCC-CHHHHHHHGG
T ss_pred cccceEEEeccC-ccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEc-cCC-ccc-ccccchhhhh
Confidence 357888888885 467888766 579999999999986443332 1 267789999999 774 454 2221 3477
Q ss_pred cCCccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCc------------------cCCCCccEE
Q 045261 77 RLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGF------------------HSLTSLRRL 138 (227)
Q Consensus 77 ~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l------------------~~l~~L~~L 138 (227)
.+++|++|++++| .++.+|..+. .+++|++|+++++ .+..++ ..+ ..+++|++|
T Consensus 385 ~l~~L~~L~Ls~N-~l~~lp~~~~---~~~~L~~L~Ls~N-~l~~l~---~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L 456 (549)
T 2z81_A 385 TLKNLTSLDISRN-TFHPMPDSCQ---WPEKMRFLNLSST-GIRVVK---TCIPQTLEVLDVSNNNLDSFSLFLPRLQEL 456 (549)
T ss_dssp GCTTCCEEECTTC-CCCCCCSCCC---CCTTCCEEECTTS-CCSCCC---TTSCTTCSEEECCSSCCSCCCCCCTTCCEE
T ss_pred cCCCCCEEECCCC-CCccCChhhc---ccccccEEECCCC-Cccccc---chhcCCceEEECCCCChhhhcccCChhcEE
Confidence 8899999999987 7778887664 6778888888874 455555 221 244555666
Q ss_pred eecCCCCCccCCCCCCCCccceeeecCCCCCCCCCCC--CCCCCCcEEeecCCc
Q 045261 139 LIQDCPNLTSLPKVGLPSSLLDLCIFNCPNLTSLPKV--GLPSSLLELTIFDCP 190 (227)
Q Consensus 139 ~l~~c~~l~~~~~~~~~~~L~~l~i~~c~~l~~~~~~--~~~~~L~~L~l~~c~ 190 (227)
+++++ +++.+|.....++|++|+++++. ++.++.. ..+++|+.|++++++
T Consensus 457 ~Ls~N-~l~~ip~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 457 YISRN-KLKTLPDASLFPVLLVMKISRNQ-LKSVPDGIFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp ECCSS-CCSSCCCGGGCTTCCEEECCSSC-CCCCCTTGGGGCTTCCEEECCSSC
T ss_pred ECCCC-ccCcCCCcccCccCCEEecCCCc-cCCcCHHHHhcCcccCEEEecCCC
Confidence 66553 45555554445566666666543 3333332 235566666665544
No 48
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.57 E-value=6.6e-14 Score=122.86 Aligned_cols=103 Identities=17% Similarity=0.155 Sum_probs=54.5
Q ss_pred ccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecC------CCCCccCCCC-
Q 045261 80 SLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQD------CPNLTSLPKV- 152 (227)
Q Consensus 80 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~------c~~l~~~~~~- 152 (227)
+|++|+++++ .+..+|..+.. ..+++|+.|++++ +.+..+| ..+.++++|++|++++ +.-.+.+|..
T Consensus 489 ~L~~L~Ls~N-~l~~lp~~~~~-~~l~~L~~L~Ls~-N~l~~ip---~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l 562 (636)
T 4eco_A 489 LLTSIDLRFN-KLTKLSDDFRA-TTLPYLVGIDLSY-NSFSKFP---TQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI 562 (636)
T ss_dssp GCCEEECCSS-CCCBCCGGGST-TTCTTCCEEECCS-SCCSSCC---CGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTG
T ss_pred CccEEECcCC-cCCccChhhhh-ccCCCcCEEECCC-CCCCCcC---hhhhcCCCCCEEECCCCcccccCcccccChHHH
Confidence 5555555554 44455544310 0355666666665 3444455 5555666666666633 2223334432
Q ss_pred CCCCccceeeecCCCCCCCCCCCCCCCCCcEEeecCCc
Q 045261 153 GLPSSLLDLCIFNCPNLTSLPKVGLPSSLLELTIFDCP 190 (227)
Q Consensus 153 ~~~~~L~~l~i~~c~~l~~~~~~~~~~~L~~L~l~~c~ 190 (227)
..+++|++|++++|.. +.+|.. +.++|++|++++|+
T Consensus 563 ~~l~~L~~L~Ls~N~l-~~ip~~-~~~~L~~L~Ls~N~ 598 (636)
T 4eco_A 563 TLCPSLTQLQIGSNDI-RKVNEK-ITPNISVLDIKDNP 598 (636)
T ss_dssp GGCSSCCEEECCSSCC-CBCCSC-CCTTCCEEECCSCT
T ss_pred hcCCCCCEEECCCCcC-CccCHh-HhCcCCEEECcCCC
Confidence 3355666666666554 555543 33667777777665
No 49
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.56 E-value=1e-13 Score=119.22 Aligned_cols=131 Identities=21% Similarity=0.227 Sum_probs=101.2
Q ss_pred CCCCccEEEeccCCCCCcC-CcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCC
Q 045261 3 LPESISSVEIRRCEKLGAL-PSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLT 79 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~ 79 (227)
++++|+.|++++|. ++.+ |..+.++++|++|+++++. +..+++. ..+++|++|++ ++ +.+. ..++..++.++
T Consensus 24 ~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L-s~-n~l~-~~~~~~~~~l~ 98 (549)
T 2z81_A 24 LTAAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDL-SD-NHLS-SLSSSWFGPLS 98 (549)
T ss_dssp CCTTCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEEC-TT-SCCC-SCCHHHHTTCT
T ss_pred CCCCccEEECcCCc-cCccChhhhhcCCcccEEECCCCC-cCccChhhccccccCCEEEC-CC-CccC-ccCHHHhccCC
Confidence 45789999999975 5544 5788999999999999975 6666543 78899999999 76 4554 44455588999
Q ss_pred ccceEEeccCCCCCc--cCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCC
Q 045261 80 SLRWLLIERCDESEC--FPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCP 144 (227)
Q Consensus 80 ~L~~L~l~~~~~l~~--l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~ 144 (227)
+|++|+++++ .+.. .|..+. .+++|++|+++++..+..++ ...+.++++|++|+++++.
T Consensus 99 ~L~~L~Ls~n-~l~~~~~~~~~~---~l~~L~~L~L~~n~~~~~~~--~~~~~~l~~L~~L~L~~n~ 159 (549)
T 2z81_A 99 SLKYLNLMGN-PYQTLGVTSLFP---NLTNLQTLRIGNVETFSEIR--RIDFAGLTSLNELEIKALS 159 (549)
T ss_dssp TCCEEECTTC-CCSSSCSSCSCT---TCTTCCEEEEEESSSCCEEC--TTTTTTCCEEEEEEEEETT
T ss_pred CCcEEECCCC-cccccchhhhhh---ccCCccEEECCCCccccccC--HhhhhcccccCeeeccCCc
Confidence 9999999987 5553 344554 68899999999976677776 4678888999999998854
No 50
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.56 E-value=2.4e-14 Score=115.00 Aligned_cols=196 Identities=14% Similarity=0.112 Sum_probs=138.3
Q ss_pred CCCccEEEeccCCCCCcCCccc--CCCCCcceEeecCCCCCcccCCC-CC-----CCCcceeEeccCcccccccchhccc
Q 045261 4 PESISSVEIRRCEKLGALPSDM--HKLNSLQDLDIRECPSIVSFPEE-GF-----PTNLTSLAIGEDMKMLYKGLVQWGL 75 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~--~~l~~L~~L~l~~c~~l~~~~~~-~~-----l~~L~~L~l~~~~~~l~~~~~~~~~ 75 (227)
+++|++|++++|...+.+|..+ ..+++|++|+++++. +..+|.. .. +++|++|++ ++ +.+. .+.+..+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L-~~-N~l~-~~~~~~~ 169 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSI-AQ-AHSL-NFSCEQV 169 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEE-ES-CSCC-CCCTTTC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEe-eC-CCCc-cchHHHh
Confidence 6899999999987666788776 899999999999975 5555543 33 389999999 77 4554 4555678
Q ss_pred ccCCccceEEeccCCCCCc--cCccC--cCCCCCCccceEEEecCCCccc---cCCCCCCccCCCCccEEeecCCCCCcc
Q 045261 76 HRLTSLRWLLIERCDESEC--FPDGM--MGMTLPTSLVHLNIVEFQKLKN---LSSSSSGFHSLTSLRRLLIQDCPNLTS 148 (227)
Q Consensus 76 ~~l~~L~~L~l~~~~~l~~--l~~~~--~~~~~~~~L~~L~l~~~~~l~~---l~~~~~~l~~l~~L~~L~l~~c~~l~~ 148 (227)
+.+++|++|+++++..... ++... . .+++|++|+++++ .+.. ++ ...+.++++|++|+++++ .+..
T Consensus 170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~---~l~~L~~L~L~~N-~l~~~~~~~--~~~~~~l~~L~~L~Ls~N-~l~~ 242 (312)
T 1wwl_A 170 RVFPALSTLDLSDNPELGERGLISALCPL---KFPTLQVLALRNA-GMETPSGVC--SALAAARVQLQGLDLSHN-SLRD 242 (312)
T ss_dssp CCCSSCCEEECCSCTTCHHHHHHHHSCTT---SCTTCCEEECTTS-CCCCHHHHH--HHHHHTTCCCSEEECTTS-CCCS
T ss_pred ccCCCCCEEECCCCCcCcchHHHHHHHhc---cCCCCCEEECCCC-cCcchHHHH--HHHHhcCCCCCEEECCCC-cCCc
Confidence 8999999999999854333 22222 2 6789999999984 5653 33 123357799999999995 5655
Q ss_pred CC-CC--CCCCccceeeecCCCCCCCCCCCCCCCCCcEEeecCCchhhhhhcccCCCCcccccccceEEeccCC
Q 045261 149 LP-KV--GLPSSLLDLCIFNCPNLTSLPKVGLPSSLLELTIFDCPKLRKECKRDKGKGWSKIANIPMFLIDDTD 219 (227)
Q Consensus 149 ~~-~~--~~~~~L~~l~i~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 219 (227)
.+ .. ...++|++|+++++. ++.+|.... ++|++|+++++. ++. . +.+..+.++..+.+.+..
T Consensus 243 ~~~~~~~~~l~~L~~L~Ls~N~-l~~ip~~~~-~~L~~L~Ls~N~-l~~----~--p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 243 AAGAPSCDWPSQLNSLNLSFTG-LKQVPKGLP-AKLSVLDLSYNR-LDR----N--PSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp SCCCSCCCCCTTCCEEECTTSC-CSSCCSSCC-SEEEEEECCSSC-CCS----C--CCTTTSCEEEEEECTTCT
T ss_pred ccchhhhhhcCCCCEEECCCCc-cChhhhhcc-CCceEEECCCCC-CCC----C--hhHhhCCCCCEEeccCCC
Confidence 43 22 346899999999865 557776433 899999999864 221 1 124455666666666543
No 51
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.55 E-value=2e-13 Score=112.76 Aligned_cols=127 Identities=17% Similarity=0.310 Sum_probs=72.1
Q ss_pred CCccEEEeccCCCCCcCCcc-cCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCcc
Q 045261 5 ESISSVEIRRCEKLGALPSD-MHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSL 81 (227)
Q Consensus 5 ~~L~~L~l~~~~~l~~lp~~-~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L 81 (227)
++++.|+++++ .++.+|.. +..+++|++|+++++. +..++.. ..+++|++|++ +++ .+. .+.+..++.+++|
T Consensus 45 ~~l~~l~l~~~-~l~~l~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L-~~n-~l~-~~~~~~~~~l~~L 119 (390)
T 3o6n_A 45 NNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYM-GFN-AIR-YLPPHVFQNVPLL 119 (390)
T ss_dssp CCCSEEEEESC-EESEECTHHHHHCCCCSEEECTTSC-CCEECTTTTTTCTTCCEEEC-CSS-CCC-CCCTTTTTTCTTC
T ss_pred CCceEEEecCC-chhhCChhHhcccccCcEEECCCCc-ccccChhhccCCCCcCEEEC-CCC-CCC-cCCHHHhcCCCCC
Confidence 56666666664 35555543 4566666777766653 4444432 55666666666 553 333 3334445666666
Q ss_pred ceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecC
Q 045261 82 RWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQD 142 (227)
Q Consensus 82 ~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~ 142 (227)
++|+++++ .+..+|.... ..+++|++|++++ +.+..++ ...+..+++|++|++++
T Consensus 120 ~~L~L~~n-~l~~l~~~~~--~~l~~L~~L~L~~-n~l~~~~--~~~~~~l~~L~~L~l~~ 174 (390)
T 3o6n_A 120 TVLVLERN-DLSSLPRGIF--HNTPKLTTLSMSN-NNLERIE--DDTFQATTSLQNLQLSS 174 (390)
T ss_dssp CEEECCSS-CCCCCCTTTT--TTCTTCCEEECCS-SCCCBCC--TTTTSSCTTCCEEECCS
T ss_pred CEEECCCC-ccCcCCHHHh--cCCCCCcEEECCC-CccCccC--hhhccCCCCCCEEECCC
Confidence 66666665 5555655431 1456666666666 3444443 24456666666666665
No 52
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.55 E-value=1.9e-14 Score=115.63 Aligned_cols=175 Identities=17% Similarity=0.166 Sum_probs=109.2
Q ss_pred CCCCccEEEeccCCCCCcCCcccCCC-----CCcceEeecCCCCCcccCCC--CCCCCcceeEeccCccccccc--ch-h
Q 045261 3 LPESISSVEIRRCEKLGALPSDMHKL-----NSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKG--LV-Q 72 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~~~~~l-----~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~--~~-~ 72 (227)
-+++|+.|++++|. ++.+|..++.+ ++|++|+++++. +..++.. ..+++|++|++ +++.-.. . .+ .
T Consensus 119 ~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L-s~N~l~~-~~~~~~~ 194 (312)
T 1wwl_A 119 TGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAH-SLNFSCEQVRVFPALSTLDL-SDNPELG-ERGLISA 194 (312)
T ss_dssp CSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCS-CCCCCTTTCCCCSSCCEEEC-CSCTTCH-HHHHHHH
T ss_pred cCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCC-CccchHHHhccCCCCCEEEC-CCCCcCc-chHHHHH
Confidence 36778888888854 44456656555 788888888764 5555532 67788888888 6643221 1 11 1
Q ss_pred cccccCCccceEEeccCCCCCccC---ccCcCCCCCCccceEEEecCCCccc-cCCCCCCccCCCCccEEeecCCCCCcc
Q 045261 73 WGLHRLTSLRWLLIERCDESECFP---DGMMGMTLPTSLVHLNIVEFQKLKN-LSSSSSGFHSLTSLRRLLIQDCPNLTS 148 (227)
Q Consensus 73 ~~~~~l~~L~~L~l~~~~~l~~l~---~~~~~~~~~~~L~~L~l~~~~~l~~-l~~~~~~l~~l~~L~~L~l~~c~~l~~ 148 (227)
..+..+++|++|+++++ .+..++ .... ..+++|++|+++++ .+.. .| ...+..+++|++|++++ +.++.
T Consensus 195 ~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~--~~l~~L~~L~Ls~N-~l~~~~~--~~~~~~l~~L~~L~Ls~-N~l~~ 267 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNA-GMETPSGVCSALA--AARVQLQGLDLSHN-SLRDAAG--APSCDWPSQLNSLNLSF-TGLKQ 267 (312)
T ss_dssp SCTTSCTTCCEEECTTS-CCCCHHHHHHHHH--HTTCCCSEEECTTS-CCCSSCC--CSCCCCCTTCCEEECTT-SCCSS
T ss_pred HHhccCCCCCEEECCCC-cCcchHHHHHHHH--hcCCCCCEEECCCC-cCCcccc--hhhhhhcCCCCEEECCC-CccCh
Confidence 12267788888888876 555332 2211 14577888888774 4444 32 23455677888888888 45667
Q ss_pred CCCCCCCCccceeeecCCCCCCCCCCCCCCCCCcEEeecCCc
Q 045261 149 LPKVGLPSSLLDLCIFNCPNLTSLPKVGLPSSLLELTIFDCP 190 (227)
Q Consensus 149 ~~~~~~~~~L~~l~i~~c~~l~~~~~~~~~~~L~~L~l~~c~ 190 (227)
+|.... ++|++|+++++ .++.+|....+++|++|++++.+
T Consensus 268 ip~~~~-~~L~~L~Ls~N-~l~~~p~~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 268 VPKGLP-AKLSVLDLSYN-RLDRNPSPDELPQVGNLSLKGNP 307 (312)
T ss_dssp CCSSCC-SEEEEEECCSS-CCCSCCCTTTSCEEEEEECTTCT
T ss_pred hhhhcc-CCceEEECCCC-CCCCChhHhhCCCCCEEeccCCC
Confidence 776433 77888888875 45555654556778888877654
No 53
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.55 E-value=8.1e-14 Score=121.33 Aligned_cols=201 Identities=18% Similarity=0.134 Sum_probs=89.7
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCccccccc-chhcccccCCccc
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKG-LVQWGLHRLTSLR 82 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~-~~~~~~~~l~~L~ 82 (227)
+++|+.|++++|.. +.+|. + .+++|++|+++++.....++. ..+++|+.|++ +++ .+.+. ..+..+..+++|+
T Consensus 306 ~~~L~~L~l~~n~l-~~lp~-~-~l~~L~~L~l~~n~~~~~~~~-~~l~~L~~L~l-s~n-~l~~~~~~~~~~~~~~~L~ 379 (606)
T 3vq2_A 306 HFKWQSLSIIRCQL-KQFPT-L-DLPFLKSLTLTMNKGSISFKK-VALPSLSYLDL-SRN-ALSFSGCCSYSDLGTNSLR 379 (606)
T ss_dssp TCCCSEEEEESCCC-SSCCC-C-CCSSCCEEEEESCSSCEECCC-CCCTTCCEEEC-CSS-CEEEEEECCHHHHCCSCCC
T ss_pred cccCCEEEcccccC-ccccc-C-CCCccceeeccCCcCccchhh-ccCCCCCEEEC-cCC-ccCCCcchhhhhccCCccc
Confidence 34566666666543 55552 3 566666666665543433321 35566666666 443 22211 0122344455555
Q ss_pred eEEeccCCCCCccCccCcC----------------------CCCCCccceEEEecCCCccccCCCCCCccCCCCccEEee
Q 045261 83 WLLIERCDESECFPDGMMG----------------------MTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLI 140 (227)
Q Consensus 83 ~L~l~~~~~l~~l~~~~~~----------------------~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l 140 (227)
+|++++| .+..+|..+.+ ...+++|++|++++|......| ..+.++++|++|++
T Consensus 380 ~L~L~~n-~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l 455 (606)
T 3vq2_A 380 HLDLSFN-GAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD---GIFLGLTSLNTLKM 455 (606)
T ss_dssp EEECCSC-SEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCT---TTTTTCTTCCEEEC
T ss_pred EeECCCC-ccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccch---hhhcCCCCCCEEEC
Confidence 5555554 33333332220 0133444444444433222233 44445555555555
Q ss_pred cCCCCCcc-CCCC-CCCCccceeeecCCCCCCCCCC-CCCCCCCcEEeecCCchhhhhhcccCCCCcccccccceEEecc
Q 045261 141 QDCPNLTS-LPKV-GLPSSLLDLCIFNCPNLTSLPK-VGLPSSLLELTIFDCPKLRKECKRDKGKGWSKIANIPMFLIDD 217 (227)
Q Consensus 141 ~~c~~l~~-~~~~-~~~~~L~~l~i~~c~~l~~~~~-~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~~~~~~ 217 (227)
++|.-.+. +|.. ...++|++|++++|...+..+. ...+++|++|++++|..-. .....+..+.++..+.+.+
T Consensus 456 ~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-----~~~~~~~~l~~L~~L~l~~ 530 (606)
T 3vq2_A 456 AGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLF-----LDSSHYNQLYSLSTLDCSF 530 (606)
T ss_dssp TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC-----EEGGGTTTCTTCCEEECTT
T ss_pred CCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCC-----cCHHHccCCCcCCEEECCC
Confidence 55322211 2221 2345566666665533222222 1335666666666653111 1122344455566666655
Q ss_pred CC
Q 045261 218 TD 219 (227)
Q Consensus 218 ~~ 219 (227)
..
T Consensus 531 N~ 532 (606)
T 3vq2_A 531 NR 532 (606)
T ss_dssp SC
T ss_pred Cc
Confidence 43
No 54
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.55 E-value=2e-14 Score=115.74 Aligned_cols=198 Identities=11% Similarity=0.072 Sum_probs=109.5
Q ss_pred CCCCccEEEeccCCCCCcCC-cccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhc--------
Q 045261 3 LPESISSVEIRRCEKLGALP-SDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQW-------- 73 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~-------- 73 (227)
.+++|+.|++++|. ++.++ ..+.++++|++|+++++. +...+....+++|++|++ +++ .++ .+...
T Consensus 32 ~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~l~~L~~L~L-s~n-~l~-~l~~~~~L~~L~l 106 (317)
T 3o53_A 32 SAWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDL-NNN-YVQ-ELLVGPSIETLHA 106 (317)
T ss_dssp TGGGCSEEECTTSC-CCCCCHHHHTTCTTCCEEECTTSC-CEEEEEETTCTTCCEEEC-CSS-EEE-EEEECTTCCEEEC
T ss_pred cCCCCCEEECcCCc-cCcCCHHHhhCCCcCCEEECCCCc-CCcchhhhhcCCCCEEEC-cCC-ccc-cccCCCCcCEEEC
Confidence 35689999999974 55554 678999999999999875 544444567889999998 664 343 11100
Q ss_pred --------ccccCCccceEEeccCCCCCccCc-cCcCCCCCCccceEEEecCCCccccCCCCCCc-cCCCCccEEeecCC
Q 045261 74 --------GLHRLTSLRWLLIERCDESECFPD-GMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGF-HSLTSLRRLLIQDC 143 (227)
Q Consensus 74 --------~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l-~~l~~L~~L~l~~c 143 (227)
....+++|++|+++++ .+..++. .+. .+++|+.|+++++ .+..++ ...+ ..+++|++|++++
T Consensus 107 ~~n~l~~~~~~~~~~L~~L~l~~N-~l~~~~~~~~~---~l~~L~~L~Ls~N-~l~~~~--~~~~~~~l~~L~~L~L~~- 178 (317)
T 3o53_A 107 ANNNISRVSCSRGQGKKNIYLANN-KITMLRDLDEG---CRSRVQYLDLKLN-EIDTVN--FAELAASSDTLEHLNLQY- 178 (317)
T ss_dssp CSSCCSEEEECCCSSCEEEECCSS-CCCSGGGBCTG---GGSSEEEEECTTS-CCCEEE--GGGGGGGTTTCCEEECTT-
T ss_pred CCCccCCcCccccCCCCEEECCCC-CCCCccchhhh---ccCCCCEEECCCC-CCCccc--HHHHhhccCcCCEEECCC-
Confidence 0112334444444444 3333322 221 3455666666553 333322 1222 3456666666666
Q ss_pred CCCccCCCCCCCCccceeeecCCCCCCCCCCC-CCCCCCcEEeecCCchhhhhhcccCCCCcccccccceEEeccCCc
Q 045261 144 PNLTSLPKVGLPSSLLDLCIFNCPNLTSLPKV-GLPSSLLELTIFDCPKLRKECKRDKGKGWSKIANIPMFLIDDTDS 220 (227)
Q Consensus 144 ~~l~~~~~~~~~~~L~~l~i~~c~~l~~~~~~-~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 220 (227)
+.+..++.....++|++|+++++. ++.++.. ..+++|++|+++++. ++. ....+..+.++..+.+.+...
T Consensus 179 N~l~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~L~~N~-l~~-----l~~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 179 NFIYDVKGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNNK-LVL-----IEKALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp SCCCEEECCCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTSC-CCE-----ECTTCCCCTTCCEEECTTCCC
T ss_pred CcCcccccccccccCCEEECCCCc-CCcchhhhcccCcccEEECcCCc-ccc-----hhhHhhcCCCCCEEEccCCCc
Confidence 345555444445666666666643 3333332 235666666666653 221 122344556666777666543
No 55
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.55 E-value=1.7e-13 Score=115.20 Aligned_cols=61 Identities=18% Similarity=0.087 Sum_probs=27.3
Q ss_pred CCccCCCCccEEeecCCCCCccCCCC--CCCCccceeeecCCCCCCCCCC--CCCCCCCcEEeecCC
Q 045261 127 SGFHSLTSLRRLLIQDCPNLTSLPKV--GLPSSLLDLCIFNCPNLTSLPK--VGLPSSLLELTIFDC 189 (227)
Q Consensus 127 ~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~l~i~~c~~l~~~~~--~~~~~~L~~L~l~~c 189 (227)
..+.++++|++|+++++ .+..++.. ...++|++|+++++.. +.++. ...+++|++|++++|
T Consensus 293 ~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~L~Ls~N 357 (455)
T 3v47_A 293 SVFSHFTDLEQLTLAQN-EINKIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYN 357 (455)
T ss_dssp TTTTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCC-CEECGGGGTTCTTCCEEECCSS
T ss_pred hhcccCCCCCEEECCCC-cccccChhHhcCcccCCEEECCCCcc-CCcChhHhcCcccCCEEECCCC
Confidence 34455566666666553 33333221 2334555555555432 22221 122445555555544
No 56
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.54 E-value=5.4e-13 Score=107.79 Aligned_cols=172 Identities=19% Similarity=0.259 Sum_probs=100.0
Q ss_pred CCCCccEEEeccCCCCCcCC-cccCCCCCcceEeecCCCCCccc-CCC-CCCCCcceeEeccCcccccccchhcccccCC
Q 045261 3 LPESISSVEIRRCEKLGALP-SDMHKLNSLQDLDIRECPSIVSF-PEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLT 79 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~~-~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~ 79 (227)
+.++++.|+++++. ++.++ ..+.++++|++|+++++. +..+ +.. ..+++|++|++ ++ +.+. .++.. + .+
T Consensus 50 ~~~~l~~L~L~~n~-i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L-s~-n~l~-~l~~~-~--~~ 121 (330)
T 1xku_A 50 LPPDTALLDLQNNK-ITEIKDGDFKNLKNLHTLILINNK-ISKISPGAFAPLVKLERLYL-SK-NQLK-ELPEK-M--PK 121 (330)
T ss_dssp CCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEEC-CS-SCCS-BCCSS-C--CT
T ss_pred CCCCCeEEECCCCc-CCEeChhhhccCCCCCEEECCCCc-CCeeCHHHhcCCCCCCEEEC-CC-CcCC-ccChh-h--cc
Confidence 45677777777753 45554 367777888888887764 4444 333 66777888887 55 3343 22221 2 26
Q ss_pred ccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccc
Q 045261 80 SLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLL 159 (227)
Q Consensus 80 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~ 159 (227)
+|++|+++++ .+..++.... ..+++|+.|+++++ .+...+.....+.++++|++|++++ +.+..+|.. ..++|+
T Consensus 122 ~L~~L~l~~n-~l~~~~~~~~--~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~-n~l~~l~~~-~~~~L~ 195 (330)
T 1xku_A 122 TLQELRVHEN-EITKVRKSVF--NGLNQMIVVELGTN-PLKSSGIENGAFQGMKKLSYIRIAD-TNITTIPQG-LPPSLT 195 (330)
T ss_dssp TCCEEECCSS-CCCBBCHHHH--TTCTTCCEEECCSS-CCCGGGBCTTGGGGCTTCCEEECCS-SCCCSCCSS-CCTTCS
T ss_pred cccEEECCCC-cccccCHhHh--cCCccccEEECCCC-cCCccCcChhhccCCCCcCEEECCC-CccccCCcc-ccccCC
Confidence 7778877776 5555554321 15678888888774 3332100025677778888888877 456666653 335666
Q ss_pred eeeecCCCCCCCCCC--CCCCCCCcEEeecCC
Q 045261 160 DLCIFNCPNLTSLPK--VGLPSSLLELTIFDC 189 (227)
Q Consensus 160 ~l~i~~c~~l~~~~~--~~~~~~L~~L~l~~c 189 (227)
+|+++++. ++.++. ...+++|++|+++++
T Consensus 196 ~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n 226 (330)
T 1xku_A 196 ELHLDGNK-ITKVDAASLKGLNNLAKLGLSFN 226 (330)
T ss_dssp EEECTTSC-CCEECTGGGTTCTTCCEEECCSS
T ss_pred EEECCCCc-CCccCHHHhcCCCCCCEEECCCC
Confidence 66666654 332221 123455555555554
No 57
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.54 E-value=1.7e-13 Score=119.43 Aligned_cols=103 Identities=18% Similarity=0.159 Sum_probs=70.2
Q ss_pred CCCccEEEeccCCCCCcC-CcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCc
Q 045261 4 PESISSVEIRRCEKLGAL-PSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTS 80 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~ 80 (227)
+++|+.|++++|. +..+ |..++++++|++|+++++. +..+++. +.+++|+.|++ +++ .+. .+++..++.+++
T Consensus 74 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L-~~n-~l~-~l~~~~~~~l~~ 148 (597)
T 3oja_B 74 FRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVL-ERN-DLS-SLPRGIFHNTPK 148 (597)
T ss_dssp CCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEEC-CSS-CCC-CCCTTTTTTCTT
T ss_pred CCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHHcCCCCCCEEEe-eCC-CCC-CCCHHHhccCCC
Confidence 5678888888864 4444 3577888888888888765 5555544 67788888888 664 454 455555678888
Q ss_pred cceEEeccCCCCCccCc-cCcCCCCCCccceEEEec
Q 045261 81 LRWLLIERCDESECFPD-GMMGMTLPTSLVHLNIVE 115 (227)
Q Consensus 81 L~~L~l~~~~~l~~l~~-~~~~~~~~~~L~~L~l~~ 115 (227)
|++|++++| .+..++. .+. .+++|+.|++++
T Consensus 149 L~~L~Ls~N-~l~~~~~~~~~---~l~~L~~L~L~~ 180 (597)
T 3oja_B 149 LTTLSMSNN-NLERIEDDTFQ---ATTSLQNLQLSS 180 (597)
T ss_dssp CCEEECCSS-CCCBCCTTTTT---TCTTCCEEECTT
T ss_pred CCEEEeeCC-cCCCCChhhhh---cCCcCcEEECcC
Confidence 888888887 4544443 333 566777777766
No 58
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.54 E-value=1.7e-13 Score=111.79 Aligned_cols=174 Identities=20% Similarity=0.213 Sum_probs=121.6
Q ss_pred CCCccEEEeccCCCCCcCC-cccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcc------
Q 045261 4 PESISSVEIRRCEKLGALP-SDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWG------ 74 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~------ 74 (227)
+++|++|++++|...+.+| ..+.+++++.++.+.++..+..+++. ..+++|+.|++ ++ +.+. .+++..
T Consensus 53 l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l-~~-n~l~-~~~~~~~~~~~~ 129 (350)
T 4ay9_X 53 FGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLI-SN-TGIK-HLPDVHKIHSLQ 129 (350)
T ss_dssp CTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEE-EE-ECCS-SCCCCTTCCBSS
T ss_pred CCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccc-cc-cccc-cCCchhhcccch
Confidence 6789999999987666666 35677888777666666667777554 66778888877 54 3332 112211
Q ss_pred -------------------cccC-CccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCC
Q 045261 75 -------------------LHRL-TSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTS 134 (227)
Q Consensus 75 -------------------~~~l-~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~ 134 (227)
+..+ ..++.|+++++ .++.++.... ...+|+++++.+++.++.+| ...++.+++
T Consensus 130 l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~~~~f---~~~~L~~l~l~~~n~l~~i~--~~~f~~l~~ 203 (350)
T 4ay9_X 130 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNSAF---NGTQLDELNLSDNNNLEELP--NDVFHGASG 203 (350)
T ss_dssp CEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEECTTSS---TTEEEEEEECTTCTTCCCCC--TTTTTTEEC
T ss_pred hhhhhhccccccccccccchhhcchhhhhhccccc-cccCCChhhc---cccchhHHhhccCCcccCCC--HHHhccCcc
Confidence 2222 23555666654 5555655543 44678888888778888887 456788889
Q ss_pred ccEEeecCCCCCccCCCCCCCCccceeeecCCCCCCCCCCCCCCCCCcEEeecC
Q 045261 135 LRRLLIQDCPNLTSLPKVGLPSSLLDLCIFNCPNLTSLPKVGLPSSLLELTIFD 188 (227)
Q Consensus 135 L~~L~l~~c~~l~~~~~~~~~~~L~~l~i~~c~~l~~~~~~~~~~~L~~L~l~~ 188 (227)
|++|++++ +.++.+|.. .+.+|++|.+.++..++.+|....+++|+.+++..
T Consensus 204 L~~LdLs~-N~l~~lp~~-~~~~L~~L~~l~~~~l~~lP~l~~l~~L~~l~l~~ 255 (350)
T 4ay9_X 204 PVILDISR-TRIHSLPSY-GLENLKKLRARSTYNLKKLPTLEKLVALMEASLTY 255 (350)
T ss_dssp CSEEECTT-SCCCCCCSS-SCTTCCEEECTTCTTCCCCCCTTTCCSCCEEECSC
T ss_pred cchhhcCC-CCcCccChh-hhccchHhhhccCCCcCcCCCchhCcChhhCcCCC
Confidence 99999988 578888874 46788888888888888888766688999998864
No 59
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.53 E-value=2.9e-13 Score=122.34 Aligned_cols=178 Identities=16% Similarity=0.097 Sum_probs=131.1
Q ss_pred CCCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCc
Q 045261 3 LPESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTS 80 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~ 80 (227)
++++|+.|++++|......|..+.++++|++|++++|.....+++. ..+++|++|++ +++ .+. ...+..++.+++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~L-s~N-~l~-~~~p~~~~~l~~ 98 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDL-GSS-KIY-FLHPDAFQGLFH 98 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEEC-TTC-CCC-EECTTSSCSCSS
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEEC-CCC-cCc-ccCHhHccCCcc
Confidence 5689999999997543445688999999999999998777777443 88999999999 774 454 445667999999
Q ss_pred cceEEeccCCCCCccCcc--CcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCC--C-
Q 045261 81 LRWLLIERCDESECFPDG--MMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGL--P- 155 (227)
Q Consensus 81 L~~L~l~~~~~l~~l~~~--~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~--~- 155 (227)
|++|++++|.....++.. +. .+++|++|+++++ .+..++ ....++++++|++|+++++ .+..+....+ .
T Consensus 99 L~~L~Ls~n~l~~~~~~~~~~~---~L~~L~~L~Ls~N-~l~~~~-~~~~~~~L~~L~~L~Ls~N-~i~~~~~~~l~~l~ 172 (844)
T 3j0a_A 99 LFELRLYFCGLSDAVLKDGYFR---NLKALTRLDLSKN-QIRSLY-LHPSFGKLNSLKSIDFSSN-QIFLVCEHELEPLQ 172 (844)
T ss_dssp CCCEECTTCCCSSCCSTTCCCS---SCSSCCEEEEESC-CCCCCC-CCGGGGTCSSCCEEEEESS-CCCCCCSGGGHHHH
T ss_pred cCEeeCcCCCCCcccccCcccc---ccCCCCEEECCCC-cccccc-cchhHhhCCCCCEEECCCC-cCCeeCHHHccccc
Confidence 999999998443334543 43 7899999999994 555543 0246889999999999994 5555443322 2
Q ss_pred -CccceeeecCCCCCCCCCCC-CCCC------CCcEEeecCC
Q 045261 156 -SSLLDLCIFNCPNLTSLPKV-GLPS------SLLELTIFDC 189 (227)
Q Consensus 156 -~~L~~l~i~~c~~l~~~~~~-~~~~------~L~~L~l~~c 189 (227)
++|+.|+++++......+.. +.++ +|+.|++++|
T Consensus 173 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n 214 (844)
T 3j0a_A 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN 214 (844)
T ss_dssp HCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSC
T ss_pred CCccceEECCCCccccccccchhhcCCccccCceeEEecCCC
Confidence 68899999987665544432 2222 3899999987
No 60
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.53 E-value=6.2e-14 Score=122.07 Aligned_cols=130 Identities=21% Similarity=0.100 Sum_probs=58.3
Q ss_pred CCCccEEEeccCCCCCc--CCcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCc
Q 045261 4 PESISSVEIRRCEKLGA--LPSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTS 80 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~--lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~ 80 (227)
+++|+.|++++|...+. +|..+..+++|++|++++|. +..++.. ..+++|+.|++ +++ .+.+..+...+..+++
T Consensus 349 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~l-~~n-~l~~~~~~~~~~~l~~ 425 (606)
T 3vq2_A 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG-AIIMSANFMGLEELQHLDF-QHS-TLKRVTEFSAFLSLEK 425 (606)
T ss_dssp CTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS-EEEECCCCTTCTTCCEEEC-TTS-EEESTTTTTTTTTCTT
T ss_pred CCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc-cccchhhccCCCCCCeeEC-CCC-ccCCccChhhhhcccc
Confidence 34555555555421111 24444555555666655543 4444433 45556666665 443 2221222133455555
Q ss_pred cceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccc-cCCCCCCccCCCCccEEeecC
Q 045261 81 LRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKN-LSSSSSGFHSLTSLRRLLIQD 142 (227)
Q Consensus 81 L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~-l~~~~~~l~~l~~L~~L~l~~ 142 (227)
|++|++++|......|..+. .+++|++|+++++..... +| ..++.+++|++|++++
T Consensus 426 L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~l~~n~l~~~~~~---~~~~~l~~L~~L~Ls~ 482 (606)
T 3vq2_A 426 LLYLDISYTNTKIDFDGIFL---GLTSLNTLKMAGNSFKDNTLS---NVFANTTNLTFLDLSK 482 (606)
T ss_dssp CCEEECTTSCCEECCTTTTT---TCTTCCEEECTTCEEGGGEEC---SCCTTCTTCCEEECTT
T ss_pred CCEEECcCCCCCccchhhhc---CCCCCCEEECCCCcCCCcchH---HhhccCCCCCEEECCC
Confidence 55555555532222333332 345555555554322211 33 4444455555555555
No 61
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.53 E-value=4.8e-14 Score=121.76 Aligned_cols=175 Identities=21% Similarity=0.163 Sum_probs=99.3
Q ss_pred CCCccEEEeccCCCCCcC---CcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCC
Q 045261 4 PESISSVEIRRCEKLGAL---PSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLT 79 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~l---p~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~ 79 (227)
+++|+.|++++|. +... +..+..+++|++|++++|. +..++.. ..+++|+.|++ +++ .+.+..+...+..++
T Consensus 346 ~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~l~~L~~L~l-~~n-~l~~~~~~~~~~~l~ 421 (570)
T 2z63_A 346 LPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDF-QHS-NLKQMSEFSVFLSLR 421 (570)
T ss_dssp CTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEECCSCS-EEEEEEEEETCTTCCEEEC-TTS-EEESCTTSCTTTTCT
T ss_pred CCCCCEEeCcCCc-cCccccccccccccCccCEEECCCCc-cccccccccccCCCCEEEc-cCC-ccccccchhhhhcCC
Confidence 3445555555532 2221 3344555666666666553 3333332 45666777777 553 333222223466677
Q ss_pred ccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCc-cccCCCCCCccCCCCccEEeecCCCCCccC-CCC-CCCC
Q 045261 80 SLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKL-KNLSSSSSGFHSLTSLRRLLIQDCPNLTSL-PKV-GLPS 156 (227)
Q Consensus 80 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l-~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~-~~~-~~~~ 156 (227)
+|++|++++|......+..+. .+++|++|++++|... ..+| ..+..+++|++|++++| .+..+ |.. ...+
T Consensus 422 ~L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~l~~n~l~~~~~p---~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~ 494 (570)
T 2z63_A 422 NLIYLDISHTHTRVAFNGIFN---GLSSLEVLKMAGNSFQENFLP---DIFTELRNLTFLDLSQC-QLEQLSPTAFNSLS 494 (570)
T ss_dssp TCCEEECTTSCCEECCTTTTT---TCTTCCEEECTTCEEGGGEEC---SCCTTCTTCCEEECTTS-CCCEECTTTTTTCT
T ss_pred CCCEEeCcCCcccccchhhhh---cCCcCcEEECcCCcCccccch---hhhhcccCCCEEECCCC-ccccCChhhhhccc
Confidence 777777777633333444443 5677777777774432 2466 67777788888888775 34444 332 3456
Q ss_pred ccceeeecCCCCCCCCCCC--CCCCCCcEEeecCCc
Q 045261 157 SLLDLCIFNCPNLTSLPKV--GLPSSLLELTIFDCP 190 (227)
Q Consensus 157 ~L~~l~i~~c~~l~~~~~~--~~~~~L~~L~l~~c~ 190 (227)
+|++|++++|. ++.++.. ..+++|++|++++++
T Consensus 495 ~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 495 SLQVLNMASNQ-LKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp TCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEeCCCCc-CCCCCHHHhhcccCCcEEEecCCc
Confidence 78888887764 4444432 346778888887754
No 62
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.53 E-value=4.4e-14 Score=123.03 Aligned_cols=167 Identities=16% Similarity=0.206 Sum_probs=121.3
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccce
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRW 83 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~ 83 (227)
+++|+.|++++| .+..++ .+..+++|+.|++++|. +..++....+++|+.|++ +++ .+. .+ + .+..+++|++
T Consensus 42 L~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~L-s~N-~l~-~l-~-~l~~l~~L~~ 113 (605)
T 1m9s_A 42 LNSIDQIIANNS-DIKSVQ-GIQYLPNVTKLFLNGNK-LTDIKPLTNLKNLGWLFL-DEN-KIK-DL-S-SLKDLKKLKS 113 (605)
T ss_dssp HTTCCCCBCTTC-CCCCCT-TGGGCTTCCEEECTTSC-CCCCGGGGGCTTCCEEEC-CSS-CCC-CC-T-TSTTCTTCCE
T ss_pred CCCCCEEECcCC-CCCCCh-HHccCCCCCEEEeeCCC-CCCChhhccCCCCCEEEC-cCC-CCC-CC-h-hhccCCCCCE
Confidence 467888888885 466666 47888889999998874 555555567888899988 664 444 22 2 5788888999
Q ss_pred EEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccceeee
Q 045261 84 LLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCI 163 (227)
Q Consensus 84 L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~i 163 (227)
|++++| .+..++. +. .+++|+.|++++ +.+..+ ..+..+++|+.|++++| .+..++....+++|++|++
T Consensus 114 L~Ls~N-~l~~l~~-l~---~l~~L~~L~Ls~-N~l~~l----~~l~~l~~L~~L~Ls~N-~l~~~~~l~~l~~L~~L~L 182 (605)
T 1m9s_A 114 LSLEHN-GISDING-LV---HLPQLESLYLGN-NKITDI----TVLSRLTKLDTLSLEDN-QISDIVPLAGLTKLQNLYL 182 (605)
T ss_dssp EECTTS-CCCCCGG-GG---GCTTCSEEECCS-SCCCCC----GGGGSCTTCSEEECCSS-CCCCCGGGTTCTTCCEEEC
T ss_pred EEecCC-CCCCCcc-cc---CCCccCEEECCC-CccCCc----hhhcccCCCCEEECcCC-cCCCchhhccCCCCCEEEC
Confidence 988887 5666654 32 678889998887 455555 35778888999998885 5666544556778888888
Q ss_pred cCCCCCCCCCCCCCCCCCcEEeecCCc
Q 045261 164 FNCPNLTSLPKVGLPSSLLELTIFDCP 190 (227)
Q Consensus 164 ~~c~~l~~~~~~~~~~~L~~L~l~~c~ 190 (227)
++| .+..++....+++|+.|++++|+
T Consensus 183 s~N-~i~~l~~l~~l~~L~~L~L~~N~ 208 (605)
T 1m9s_A 183 SKN-HISDLRALAGLKNLDVLELFSQE 208 (605)
T ss_dssp CSS-CCCBCGGGTTCTTCSEEECCSEE
T ss_pred cCC-CCCCChHHccCCCCCEEEccCCc
Confidence 886 45556655567888898888865
No 63
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.52 E-value=4e-14 Score=127.66 Aligned_cols=156 Identities=14% Similarity=0.176 Sum_probs=117.2
Q ss_pred CCCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCc--ccCCC--------CCCCCcceeEeccCcccccccchh
Q 045261 3 LPESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIV--SFPEE--------GFPTNLTSLAIGEDMKMLYKGLVQ 72 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~--~~~~~--------~~l~~L~~L~l~~~~~~l~~~~~~ 72 (227)
-+++|+.|++++|...+.+|..++++++|++|+++++..+. .+|.. ..+++|+.|++ ++ +.+. .++.
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~L-s~-N~L~-~ip~ 565 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYM-GY-NNLE-EFPA 565 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEEC-CS-SCCC-BCCC
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEe-eC-CcCC-ccCC
Confidence 36899999999998889999999999999999999986344 24432 35569999999 66 4554 4433
Q ss_pred -cccccCCccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCC-ccEEeecCCCCCccCC
Q 045261 73 -WGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTS-LRRLLIQDCPNLTSLP 150 (227)
Q Consensus 73 -~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~-L~~L~l~~c~~l~~~~ 150 (227)
..++.+++|++|+++++ .+..+| .+. .+++|+.|++++ +.+..+| ..+..+++ |++|+++++ .+..+|
T Consensus 566 ~~~l~~L~~L~~L~Ls~N-~l~~lp-~~~---~L~~L~~L~Ls~-N~l~~lp---~~l~~l~~~L~~L~Ls~N-~L~~lp 635 (876)
T 4ecn_A 566 SASLQKMVKLGLLDCVHN-KVRHLE-AFG---TNVKLTDLKLDY-NQIEEIP---EDFCAFTDQVEGLGFSHN-KLKYIP 635 (876)
T ss_dssp HHHHTTCTTCCEEECTTS-CCCBCC-CCC---TTSEESEEECCS-SCCSCCC---TTSCEECTTCCEEECCSS-CCCSCC
T ss_pred hhhhhcCCCCCEEECCCC-Ccccch-hhc---CCCcceEEECcC-Cccccch---HHHhhccccCCEEECcCC-CCCcCc
Confidence 25888999999999987 566888 554 788999999988 4566888 77888888 999999985 466777
Q ss_pred CC-CCC--CccceeeecCCCCCCC
Q 045261 151 KV-GLP--SSLLDLCIFNCPNLTS 171 (227)
Q Consensus 151 ~~-~~~--~~L~~l~i~~c~~l~~ 171 (227)
.. ... ++|+.|+++++...+.
T Consensus 636 ~~~~~~~~~~L~~L~Ls~N~l~g~ 659 (876)
T 4ecn_A 636 NIFNAKSVYVMGSVDFSYNKIGSE 659 (876)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTT
T ss_pred hhhhccccCCCCEEECcCCcCCCc
Confidence 53 112 2377777777655433
No 64
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.52 E-value=6.9e-14 Score=112.20 Aligned_cols=197 Identities=12% Similarity=0.071 Sum_probs=134.8
Q ss_pred CCccEEEeccCCCCCcCCccc--CCCCCcceEeecCCCCCcccCC---C--CCCCCcceeEeccCcccccccchhccccc
Q 045261 5 ESISSVEIRRCEKLGALPSDM--HKLNSLQDLDIRECPSIVSFPE---E--GFPTNLTSLAIGEDMKMLYKGLVQWGLHR 77 (227)
Q Consensus 5 ~~L~~L~l~~~~~l~~lp~~~--~~l~~L~~L~l~~c~~l~~~~~---~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~ 77 (227)
++|++|++++|...+..|..+ ..+++|++|+++++......+. . ..+++|++|++ +++ .+. ...+..++.
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~L-s~n-~l~-~~~~~~~~~ 167 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSI-AQA-HSP-AFSCEQVRA 167 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEE-ECC-SSC-CCCTTSCCC
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEe-eCC-Ccc-hhhHHHhcc
Confidence 579999999987666777777 8999999999999763332221 1 45889999999 774 444 455567889
Q ss_pred CCccceEEeccCCCCCc--cCccCcCCCCCCccceEEEecCCCccccCCCCC----CccCCCCccEEeecCCCCCccC-C
Q 045261 78 LTSLRWLLIERCDESEC--FPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSS----GFHSLTSLRRLLIQDCPNLTSL-P 150 (227)
Q Consensus 78 l~~L~~L~l~~~~~l~~--l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~----~l~~l~~L~~L~l~~c~~l~~~-~ 150 (227)
+++|++|+++++..... ++.... ...+++|++|++++ +.+..++ . .++++++|++|+++++ .+..+ |
T Consensus 168 l~~L~~L~Ls~N~l~~~~~~~~~~~-~~~l~~L~~L~Ls~-N~l~~l~---~~~~~l~~~l~~L~~L~Ls~N-~l~~~~p 241 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGERGLMAALC-PHKFPAIQNLALRN-TGMETPT---GVCAALAAAGVQPHSLDLSHN-SLRATVN 241 (310)
T ss_dssp CTTCCEEECCSCTTCHHHHHHTTSC-TTSSCCCCSCBCCS-SCCCCHH---HHHHHHHHHTCCCSSEECTTS-CCCCCCC
T ss_pred CCCCCEEECCCCCCccchhhhHHHh-hhcCCCCCEEECCC-CCCCchH---HHHHHHHhcCCCCCEEECCCC-CCCccch
Confidence 99999999999843321 221110 01578999999998 4666554 2 2467899999999994 56655 4
Q ss_pred CC-CC---CCccceeeecCCCCCCCCCCCCCCCCCcEEeecCCchhhhhhcccCCCCcccccccceEEeccCC
Q 045261 151 KV-GL---PSSLLDLCIFNCPNLTSLPKVGLPSSLLELTIFDCPKLRKECKRDKGKGWSKIANIPMFLIDDTD 219 (227)
Q Consensus 151 ~~-~~---~~~L~~l~i~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 219 (227)
.. .. +++|++|+++++. ++.+|.. ++++|++|+++++.- +.. +....+.++..+.+.+..
T Consensus 242 ~~~~~~~~~~~L~~L~Ls~N~-l~~lp~~-~~~~L~~L~Ls~N~l-~~~------~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 242 PSAPRCMWSSALNSLNLSFAG-LEQVPKG-LPAKLRVLDLSSNRL-NRA------PQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp SCCSSCCCCTTCCCEECCSSC-CCSCCSC-CCSCCSCEECCSCCC-CSC------CCTTSCCCCSCEECSSTT
T ss_pred hhHHhccCcCcCCEEECCCCC-CCchhhh-hcCCCCEEECCCCcC-CCC------chhhhCCCccEEECcCCC
Confidence 32 22 2689999998865 5577653 348999999998752 110 123445666777776553
No 65
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.51 E-value=6e-14 Score=105.30 Aligned_cols=148 Identities=17% Similarity=0.165 Sum_probs=85.4
Q ss_pred CCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccceE
Q 045261 5 ESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWL 84 (227)
Q Consensus 5 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L 84 (227)
++|+.|+++++ .++.+| .+..+++|++|++++| .+..++....+++|++|++ ++ +.+.+. .+..+..+++|++|
T Consensus 44 ~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l-~~-n~l~~~-~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 44 NSLTYITLANI-NVTDLT-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRI-MG-KDVTSD-KIPNLSGLTSLTLL 117 (197)
T ss_dssp HTCCEEEEESS-CCSCCT-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEE-EC-TTCBGG-GSCCCTTCTTCCEE
T ss_pred CCccEEeccCC-CccChH-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEe-EC-CccCcc-cChhhcCCCCCCEE
Confidence 45667777764 445555 4666677777777666 3444443355667777777 55 334321 23346666777777
Q ss_pred EeccCCCCCc-cCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccceeee
Q 045261 85 LIERCDESEC-FPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCI 163 (227)
Q Consensus 85 ~l~~~~~l~~-l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~i 163 (227)
+++++ .+.. .+..+. .+++|++|++++|..+..++ .+..+++|++|++++| .+..++....+++|++|++
T Consensus 118 ~Ls~n-~i~~~~~~~l~---~l~~L~~L~L~~n~~i~~~~----~l~~l~~L~~L~l~~n-~i~~~~~l~~l~~L~~L~l 188 (197)
T 4ezg_A 118 DISHS-AHDDSILTKIN---TLPKVNSIDLSYNGAITDIM----PLKTLPELKSLNIQFD-GVHDYRGIEDFPKLNQLYA 188 (197)
T ss_dssp ECCSS-BCBGGGHHHHT---TCSSCCEEECCSCTBCCCCG----GGGGCSSCCEEECTTB-CCCCCTTGGGCSSCCEEEE
T ss_pred EecCC-ccCcHhHHHHh---hCCCCCEEEccCCCCccccH----hhcCCCCCCEEECCCC-CCcChHHhccCCCCCEEEe
Confidence 77765 3332 333333 56667777776654455554 3566667777777663 4555554344566666666
Q ss_pred cCCC
Q 045261 164 FNCP 167 (227)
Q Consensus 164 ~~c~ 167 (227)
++++
T Consensus 189 ~~N~ 192 (197)
T 4ezg_A 189 FSQT 192 (197)
T ss_dssp CBC-
T ss_pred eCcc
Confidence 6543
No 66
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.51 E-value=1.3e-12 Score=110.30 Aligned_cols=160 Identities=21% Similarity=0.174 Sum_probs=99.7
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccce
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRW 83 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~ 83 (227)
+++|+.|+++++ .++.+| ++..+++|++|+++++. +..++ ...+++|++|++ +++ .++ .+ .++.+++|++
T Consensus 41 l~~L~~L~Ls~n-~l~~~~-~l~~l~~L~~L~Ls~n~-l~~~~-~~~l~~L~~L~L-s~N-~l~-~~---~~~~l~~L~~ 110 (457)
T 3bz5_A 41 LATLTSLDCHNS-SITDMT-GIEKLTGLTKLICTSNN-ITTLD-LSQNTNLTYLAC-DSN-KLT-NL---DVTPLTKLTY 110 (457)
T ss_dssp HTTCCEEECCSS-CCCCCT-TGGGCTTCSEEECCSSC-CSCCC-CTTCTTCSEEEC-CSS-CCS-CC---CCTTCTTCCE
T ss_pred cCCCCEEEccCC-CcccCh-hhcccCCCCEEEccCCc-CCeEc-cccCCCCCEEEC-cCC-CCc-ee---ecCCCCcCCE
Confidence 467888888886 466666 57888888888888864 66565 357788888888 663 454 22 2677888888
Q ss_pred EEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccceeee
Q 045261 84 LLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCI 163 (227)
Q Consensus 84 L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~i 163 (227)
|+++++ .++.++ +. .+++|++|++++ +.+..++ ++++++|++|++++|..++.++. ...++|++|++
T Consensus 111 L~L~~N-~l~~l~--~~---~l~~L~~L~l~~-N~l~~l~-----l~~l~~L~~L~l~~n~~~~~~~~-~~l~~L~~L~l 177 (457)
T 3bz5_A 111 LNCDTN-KLTKLD--VS---QNPLLTYLNCAR-NTLTEID-----VSHNTQLTELDCHLNKKITKLDV-TPQTQLTTLDC 177 (457)
T ss_dssp EECCSS-CCSCCC--CT---TCTTCCEEECTT-SCCSCCC-----CTTCTTCCEEECTTCSCCCCCCC-TTCTTCCEEEC
T ss_pred EECCCC-cCCeec--CC---CCCcCCEEECCC-Cccceec-----cccCCcCCEEECCCCCccccccc-ccCCcCCEEEC
Confidence 888876 566665 32 567777877776 3454443 45566666666666655555532 33455666666
Q ss_pred cCCCCCCCCCCCCCCCCCcEEeecC
Q 045261 164 FNCPNLTSLPKVGLPSSLLELTIFD 188 (227)
Q Consensus 164 ~~c~~l~~~~~~~~~~~L~~L~l~~ 188 (227)
+++. ++.++ .+.+++|++|++++
T Consensus 178 s~n~-l~~l~-l~~l~~L~~L~l~~ 200 (457)
T 3bz5_A 178 SFNK-ITELD-VSQNKLLNRLNCDT 200 (457)
T ss_dssp CSSC-CCCCC-CTTCTTCCEEECCS
T ss_pred CCCc-cceec-cccCCCCCEEECcC
Confidence 5542 33333 22234444444443
No 67
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.51 E-value=5.5e-13 Score=117.61 Aligned_cols=178 Identities=16% Similarity=0.077 Sum_probs=89.2
Q ss_pred CCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccc----------------
Q 045261 5 ESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKML---------------- 66 (227)
Q Consensus 5 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l---------------- 66 (227)
++|+.|++++|...+..|..+..+++|+.|+++++.....++.. ..+++|++|++ +++...
T Consensus 381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L-s~n~l~~~~~~~~~~~~~L~~L 459 (680)
T 1ziw_A 381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYL-SYNKYLQLTRNSFALVPSLQRL 459 (680)
T ss_dssp SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEEC-CSCSEEECCTTTTTTCTTCCEE
T ss_pred CcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEec-CCCCcceeChhhhhcCcccccc
Confidence 35666666665433333455566666666666655422233322 34455555555 443211
Q ss_pred -------c-ccchhcccccCCccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCC------CCCCccCC
Q 045261 67 -------Y-KGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSS------SSSGFHSL 132 (227)
Q Consensus 67 -------~-~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~------~~~~l~~l 132 (227)
. ....+..+..+++|++|+++++ .+..++.... ..+++|++|++++ +.+..++. ....+.++
T Consensus 460 ~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N-~l~~i~~~~~--~~l~~L~~L~Ls~-N~l~~~~~~~~~~~~~~~~~~l 535 (680)
T 1ziw_A 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNN-NIANINDDML--EGLEKLEILDLQH-NNLARLWKHANPGGPIYFLKGL 535 (680)
T ss_dssp ECTTSCCBCTTCSSCTTTTCTTCCEEECCSS-CCCCCCTTTT--TTCTTCCEEECCS-SCCGGGGSTTSTTSCCCTTTTC
T ss_pred hhccccccccccCCcccccCCCCCEEECCCC-CCCcCChhhh--ccccccCEEeCCC-CCccccchhhccCCcchhhcCC
Confidence 0 0112233555566666666655 4444443321 1456666666665 33443310 01124566
Q ss_pred CCccEEeecCCCCCccCCCC--CCCCccceeeecCCCCCCCCCCCC--CCCCCcEEeecCC
Q 045261 133 TSLRRLLIQDCPNLTSLPKV--GLPSSLLDLCIFNCPNLTSLPKVG--LPSSLLELTIFDC 189 (227)
Q Consensus 133 ~~L~~L~l~~c~~l~~~~~~--~~~~~L~~l~i~~c~~l~~~~~~~--~~~~L~~L~l~~c 189 (227)
++|++|++++ +.+..+|.. ...++|+.|+++++ .++.++... .+++|++|+++++
T Consensus 536 ~~L~~L~L~~-N~l~~i~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~L~~N 594 (680)
T 1ziw_A 536 SHLHILNLES-NGFDEIPVEVFKDLFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQKN 594 (680)
T ss_dssp TTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCCCEEECCC-CCCCCCCHHHcccccCcceeECCCC-CCCcCCHhHhCCCCCCCEEECCCC
Confidence 6666666666 355566543 33456666776553 345555432 3566677766665
No 68
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.51 E-value=2.8e-13 Score=109.64 Aligned_cols=177 Identities=17% Similarity=0.210 Sum_probs=107.4
Q ss_pred CCCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccc
Q 045261 3 LPESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLR 82 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~ 82 (227)
-+++|++|++++|......|..+.++++|++|+++++. +..+|.. ..++|++|++ ++ +.+. .+++..+..+++|+
T Consensus 76 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~-~~~~L~~L~l-~~-n~i~-~~~~~~~~~l~~L~ 150 (332)
T 2ft3_A 76 GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH-LVEIPPN-LPSSLVELRI-HD-NRIR-KVPKGVFSGLRNMN 150 (332)
T ss_dssp TCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSC-CCSCCSS-CCTTCCEEEC-CS-SCCC-CCCSGGGSSCSSCC
T ss_pred CCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCc-CCccCcc-ccccCCEEEC-CC-CccC-ccCHhHhCCCccCC
Confidence 36789999999975333346788999999999998864 6667665 3378888888 65 4444 44444567778888
Q ss_pred eEEeccCCCCCc---cCccCcCC-----------------CCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecC
Q 045261 83 WLLIERCDESEC---FPDGMMGM-----------------TLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQD 142 (227)
Q Consensus 83 ~L~l~~~~~l~~---l~~~~~~~-----------------~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~ 142 (227)
+|+++++ .++. .+..+... ...++|++|++++ +.+..++ ...+..+++|++|++++
T Consensus 151 ~L~l~~n-~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~-n~i~~~~--~~~l~~l~~L~~L~L~~ 226 (332)
T 2ft3_A 151 CIEMGGN-PLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDH-NKIQAIE--LEDLLRYSKLYRLGLGH 226 (332)
T ss_dssp EEECCSC-CCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCS-SCCCCCC--TTSSTTCTTCSCCBCCS
T ss_pred EEECCCC-ccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCC-CcCCccC--HHHhcCCCCCCEEECCC
Confidence 8887775 3321 12111100 0124566666655 3444433 24566667777777776
Q ss_pred CCCCccCCCC--CCCCccceeeecCCCCCCCCCCC-CCCCCCcEEeecCCc
Q 045261 143 CPNLTSLPKV--GLPSSLLDLCIFNCPNLTSLPKV-GLPSSLLELTIFDCP 190 (227)
Q Consensus 143 c~~l~~~~~~--~~~~~L~~l~i~~c~~l~~~~~~-~~~~~L~~L~l~~c~ 190 (227)
+.+..++.. ...++|++|+++++. ++.+|.. ..+++|++|+++++.
T Consensus 227 -N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~lp~~l~~l~~L~~L~l~~N~ 275 (332)
T 2ft3_A 227 -NQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNN 275 (332)
T ss_dssp -SCCCCCCTTGGGGCTTCCEEECCSSC-CCBCCTTGGGCTTCCEEECCSSC
T ss_pred -CcCCcCChhHhhCCCCCCEEECCCCc-CeecChhhhcCccCCEEECCCCC
Confidence 345555442 345667777777653 4455542 345677777777653
No 69
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.51 E-value=1.9e-15 Score=122.34 Aligned_cols=199 Identities=14% Similarity=0.153 Sum_probs=139.5
Q ss_pred CCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcc--cCCC-CCCCCcceeEeccCcccccccchhcccccCCcc
Q 045261 5 ESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVS--FPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSL 81 (227)
Q Consensus 5 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~--~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L 81 (227)
++++.|+++++. ++..+..+..+++|++|++++|. +.. ++.. ..+++|++|++ ++|. +.+. .+..+..+++|
T Consensus 70 ~~l~~L~l~~n~-l~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L-~~~~-l~~~-~~~~l~~~~~L 144 (336)
T 2ast_B 70 QGVIAFRCPRSF-MDQPLAEHFSPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSL-EGLR-LSDP-IVNTLAKNSNL 144 (336)
T ss_dssp TTCSEEECTTCE-ECSCCCSCCCCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEEC-TTCB-CCHH-HHHHHTTCTTC
T ss_pred ccceEEEcCCcc-ccccchhhccCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeC-cCcc-cCHH-HHHHHhcCCCC
Confidence 678889998854 45555557789999999999986 432 4443 77899999999 8864 5423 34457789999
Q ss_pred ceEEeccCCCCCc--cCccCcCCCCCCccceEEEecCCCccc--cCCCCCCccCCC-CccEEeecCCC-CCc--cCCCC-
Q 045261 82 RWLLIERCDESEC--FPDGMMGMTLPTSLVHLNIVEFQKLKN--LSSSSSGFHSLT-SLRRLLIQDCP-NLT--SLPKV- 152 (227)
Q Consensus 82 ~~L~l~~~~~l~~--l~~~~~~~~~~~~L~~L~l~~~~~l~~--l~~~~~~l~~l~-~L~~L~l~~c~-~l~--~~~~~- 152 (227)
++|++++|..++. ++..+. .+++|++|++++|..+.. ++ ..+..++ +|++|++++|. .+. .++..
T Consensus 145 ~~L~L~~~~~l~~~~l~~~~~---~~~~L~~L~l~~~~~l~~~~~~---~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~ 218 (336)
T 2ast_B 145 VRLNLSGCSGFSEFALQTLLS---SCSRLDELNLSWCFDFTEKHVQ---VAVAHVSETITQLNLSGYRKNLQKSDLSTLV 218 (336)
T ss_dssp SEEECTTCBSCCHHHHHHHHH---HCTTCCEEECCCCTTCCHHHHH---HHHHHSCTTCCEEECCSCGGGSCHHHHHHHH
T ss_pred CEEECCCCCCCCHHHHHHHHh---cCCCCCEEcCCCCCCcChHHHH---HHHHhcccCCCEEEeCCCcccCCHHHHHHHH
Confidence 9999999866663 555443 678999999999756664 55 6677899 99999999985 343 22221
Q ss_pred CCCCccceeeecCCCCCCC--CCCCCCCCCCcEEeecCCchhhhhhcccCCCCcccccccceEEeccC
Q 045261 153 GLPSSLLDLCIFNCPNLTS--LPKVGLPSSLLELTIFDCPKLRKECKRDKGKGWSKIANIPMFLIDDT 218 (227)
Q Consensus 153 ~~~~~L~~l~i~~c~~l~~--~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 218 (227)
...++|++|++++|..++. ++....+++|++|++++|..+..... ..+..+.++..+.+.++
T Consensus 219 ~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~----~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 219 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETL----LELGEIPTLKTLQVFGI 282 (336)
T ss_dssp HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGG----GGGGGCTTCCEEECTTS
T ss_pred hhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHH----HHHhcCCCCCEEeccCc
Confidence 3467999999999986553 22334469999999999974432211 12233445555555554
No 70
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.51 E-value=8.8e-13 Score=106.66 Aligned_cols=84 Identities=17% Similarity=0.200 Sum_probs=36.0
Q ss_pred CccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCccce
Q 045261 6 SISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRW 83 (227)
Q Consensus 6 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~ 83 (227)
+++.++++++ .++.+|..+ .++|++|+++++. +..++.. ..+++|++|++ +++ .+. .+.+..++.+++|++
T Consensus 34 ~l~~l~~~~~-~l~~ip~~~--~~~l~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L-~~n-~l~-~~~~~~~~~l~~L~~ 106 (332)
T 2ft3_A 34 HLRVVQCSDL-GLKAVPKEI--SPDTTLLDLQNND-ISELRKDDFKGLQHLYALVL-VNN-KIS-KIHEKAFSPLRKLQK 106 (332)
T ss_dssp ETTEEECCSS-CCSSCCSCC--CTTCCEEECCSSC-CCEECTTTTTTCTTCCEEEC-CSS-CCC-EECGGGSTTCTTCCE
T ss_pred cCCEEECCCC-CccccCCCC--CCCCeEEECCCCc-CCccCHhHhhCCCCCcEEEC-CCC-ccC-ccCHhHhhCcCCCCE
Confidence 3445555542 334444333 2345555555432 3333321 44455555555 432 222 222333444555555
Q ss_pred EEeccCCCCCccCc
Q 045261 84 LLIERCDESECFPD 97 (227)
Q Consensus 84 L~l~~~~~l~~l~~ 97 (227)
|+++++ .+..+|.
T Consensus 107 L~L~~n-~l~~l~~ 119 (332)
T 2ft3_A 107 LYISKN-HLVEIPP 119 (332)
T ss_dssp EECCSS-CCCSCCS
T ss_pred EECCCC-cCCccCc
Confidence 555544 3444443
No 71
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.51 E-value=3e-13 Score=114.36 Aligned_cols=144 Identities=20% Similarity=0.260 Sum_probs=66.6
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccce
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRW 83 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~ 83 (227)
+++|+.|++++|. +..++ .+..+++|++|++++|. +..++....+++|+.|++ +++ .+. .+ ..+..+++|++
T Consensus 176 l~~L~~L~l~~n~-l~~~~-~l~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~l-~~n-~l~-~~--~~l~~l~~L~~ 247 (466)
T 1o6v_A 176 LTTLERLDISSNK-VSDIS-VLAKLTNLESLIATNNQ-ISDITPLGILTNLDELSL-NGN-QLK-DI--GTLASLTNLTD 247 (466)
T ss_dssp CTTCCEEECCSSC-CCCCG-GGGGCTTCSEEECCSSC-CCCCGGGGGCTTCCEEEC-CSS-CCC-CC--GGGGGCTTCSE
T ss_pred CCCCCEEECcCCc-CCCCh-hhccCCCCCEEEecCCc-ccccccccccCCCCEEEC-CCC-Ccc-cc--hhhhcCCCCCE
Confidence 4556666666643 33333 35556666666666553 333332344556666666 443 222 11 12445555666
Q ss_pred EEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccceeee
Q 045261 84 LLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCI 163 (227)
Q Consensus 84 L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~i 163 (227)
|++++| .+..++. +. .+++|+.|++++ +.+..++ . +..+++|++|++++| .+..++....+++|+.|++
T Consensus 248 L~l~~n-~l~~~~~-~~---~l~~L~~L~l~~-n~l~~~~---~-~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~L 316 (466)
T 1o6v_A 248 LDLANN-QISNLAP-LS---GLTKLTELKLGA-NQISNIS---P-LAGLTALTNLELNEN-QLEDISPISNLKNLTYLTL 316 (466)
T ss_dssp EECCSS-CCCCCGG-GT---TCTTCSEEECCS-SCCCCCG---G-GTTCTTCSEEECCSS-CCSCCGGGGGCTTCSEEEC
T ss_pred EECCCC-ccccchh-hh---cCCCCCEEECCC-CccCccc---c-ccCCCccCeEEcCCC-cccCchhhcCCCCCCEEEC
Confidence 665554 3333332 11 345555555554 2333333 1 444445555555442 2333332223344444444
Q ss_pred cCC
Q 045261 164 FNC 166 (227)
Q Consensus 164 ~~c 166 (227)
++|
T Consensus 317 ~~n 319 (466)
T 1o6v_A 317 YFN 319 (466)
T ss_dssp CSS
T ss_pred cCC
Confidence 443
No 72
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.51 E-value=3.3e-13 Score=114.13 Aligned_cols=166 Identities=18% Similarity=0.223 Sum_probs=80.0
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccce
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRW 83 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~ 83 (227)
+++|+.|++++|. +..++. ++.+++|++|+++++. +..++....+++|+.|++ +++ .+. ...+ +..+++|++
T Consensus 198 l~~L~~L~l~~n~-l~~~~~-~~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l-~~n-~l~-~~~~--~~~l~~L~~ 269 (466)
T 1o6v_A 198 LTNLESLIATNNQ-ISDITP-LGILTNLDELSLNGNQ-LKDIGTLASLTNLTDLDL-ANN-QIS-NLAP--LSGLTKLTE 269 (466)
T ss_dssp CTTCSEEECCSSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCGGGGGCTTCSEEEC-CSS-CCC-CCGG--GTTCTTCSE
T ss_pred CCCCCEEEecCCc-cccccc-ccccCCCCEEECCCCC-cccchhhhcCCCCCEEEC-CCC-ccc-cchh--hhcCCCCCE
Confidence 4667777777754 333332 5556666666666653 444433345566666666 553 232 1111 455566666
Q ss_pred EEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccceeee
Q 045261 84 LLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCI 163 (227)
Q Consensus 84 L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~i 163 (227)
|+++++ .+..++. +. .+++|+.|++++ +.+..++ .+..+++|++|++++| .+..++.....++|+.|++
T Consensus 270 L~l~~n-~l~~~~~-~~---~l~~L~~L~L~~-n~l~~~~----~~~~l~~L~~L~L~~n-~l~~~~~~~~l~~L~~L~l 338 (466)
T 1o6v_A 270 LKLGAN-QISNISP-LA---GLTALTNLELNE-NQLEDIS----PISNLKNLTYLTLYFN-NISDISPVSSLTKLQRLFF 338 (466)
T ss_dssp EECCSS-CCCCCGG-GT---TCTTCSEEECCS-SCCSCCG----GGGGCTTCSEEECCSS-CCSCCGGGGGCTTCCEEEC
T ss_pred EECCCC-ccCcccc-cc---CCCccCeEEcCC-CcccCch----hhcCCCCCCEEECcCC-cCCCchhhccCccCCEeEC
Confidence 666654 4444443 21 455555555555 2333333 1445555555555553 2333322233444555555
Q ss_pred cCCCCCCCCCCCCCCCCCcEEeecCC
Q 045261 164 FNCPNLTSLPKVGLPSSLLELTIFDC 189 (227)
Q Consensus 164 ~~c~~l~~~~~~~~~~~L~~L~l~~c 189 (227)
++| .++.++....+++|+.|++++|
T Consensus 339 ~~n-~l~~~~~l~~l~~L~~L~l~~n 363 (466)
T 1o6v_A 339 YNN-KVSDVSSLANLTNINWLSAGHN 363 (466)
T ss_dssp CSS-CCCCCGGGTTCTTCCEEECCSS
T ss_pred CCC-ccCCchhhccCCCCCEEeCCCC
Confidence 444 2233332233444444444444
No 73
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.50 E-value=3.4e-13 Score=113.88 Aligned_cols=52 Identities=19% Similarity=0.190 Sum_probs=28.4
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEe
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAI 59 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l 59 (227)
+++|+.|++++|. ++.++ ++.+++|++|+++++..+..++ ...+++|+.|++
T Consensus 126 l~~L~~L~l~~N~-l~~l~--l~~l~~L~~L~l~~n~~~~~~~-~~~l~~L~~L~l 177 (457)
T 3bz5_A 126 NPLLTYLNCARNT-LTEID--VSHNTQLTELDCHLNKKITKLD-VTPQTQLTTLDC 177 (457)
T ss_dssp CTTCCEEECTTSC-CSCCC--CTTCTTCCEEECTTCSCCCCCC-CTTCTTCCEEEC
T ss_pred CCcCCEEECCCCc-cceec--cccCCcCCEEECCCCCcccccc-cccCCcCCEEEC
Confidence 4566777776643 44443 5556666666666654444442 234555555555
No 74
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.50 E-value=8.7e-14 Score=118.43 Aligned_cols=171 Identities=9% Similarity=0.057 Sum_probs=92.2
Q ss_pred CCCccEEEeccCCCCCcC-CcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhc---------
Q 045261 4 PESISSVEIRRCEKLGAL-PSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQW--------- 73 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~--------- 73 (227)
+++|+.|++++|. ++.+ |..+..+++|++|++++|. +...++...+++|+.|++ +++ .+. .+++.
T Consensus 33 ~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~L-s~N-~l~-~l~~~~~L~~L~L~ 107 (487)
T 3oja_A 33 AWNVKELDLSGNP-LSQISAADLAPFTKLELLNLSSNV-LYETLDLESLSTLRTLDL-NNN-YVQ-ELLVGPSIETLHAA 107 (487)
T ss_dssp GGGCCEEECCSSC-CCCCCGGGGTTCTTCCEEECTTSC-CEEEEECTTCTTCCEEEC-CSS-EEE-EEEECTTCCEEECC
T ss_pred CCCccEEEeeCCc-CCCCCHHHHhCCCCCCEEEeeCCC-CCCCcccccCCCCCEEEe-cCC-cCC-CCCCCCCcCEEECc
Confidence 4589999999975 5554 4788999999999999975 544444567888999998 664 443 11110
Q ss_pred -------ccccCCccceEEeccCCCCCcc-CccCcCCCCCCccceEEEecCCCccc-cCCCCCCcc-CCCCccEEeecCC
Q 045261 74 -------GLHRLTSLRWLLIERCDESECF-PDGMMGMTLPTSLVHLNIVEFQKLKN-LSSSSSGFH-SLTSLRRLLIQDC 143 (227)
Q Consensus 74 -------~~~~l~~L~~L~l~~~~~l~~l-~~~~~~~~~~~~L~~L~l~~~~~l~~-l~~~~~~l~-~l~~L~~L~l~~c 143 (227)
....+++|++|++++| .+..+ |..++ .+++|+.|+++++ .+.. .| ..+. .+++|++|+++++
T Consensus 108 ~N~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~---~l~~L~~L~Ls~N-~l~~~~~---~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 108 NNNISRVSCSRGQGKKNIYLANN-KITMLRDLDEG---CRSRVQYLDLKLN-EIDTVNF---AELAASSDTLEHLNLQYN 179 (487)
T ss_dssp SSCCCCEEECCCSSCEEEECCSS-CCCSGGGBCGG---GGSSEEEEECTTS-CCCEEEG---GGGGGGTTTCCEEECTTS
T ss_pred CCcCCCCCccccCCCCEEECCCC-CCCCCCchhhc---CCCCCCEEECCCC-CCCCcCh---HHHhhhCCcccEEecCCC
Confidence 0112334444444444 22222 22222 3455555555553 3322 22 3332 4555555555552
Q ss_pred CCCccCCCCCCCCccceeeecCCCCCCCCCC-CCCCCCCcEEeecCC
Q 045261 144 PNLTSLPKVGLPSSLLDLCIFNCPNLTSLPK-VGLPSSLLELTIFDC 189 (227)
Q Consensus 144 ~~l~~~~~~~~~~~L~~l~i~~c~~l~~~~~-~~~~~~L~~L~l~~c 189 (227)
.+..++....+++|+.|+++++. ++.++. ...+++|+.|+++++
T Consensus 180 -~l~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N 224 (487)
T 3oja_A 180 -FIYDVKGQVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNN 224 (487)
T ss_dssp -CCCEEECCCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTS
T ss_pred -ccccccccccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCC
Confidence 34444443345555555555543 333332 122455555555554
No 75
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.50 E-value=1.6e-12 Score=114.71 Aligned_cols=174 Identities=15% Similarity=0.097 Sum_probs=104.4
Q ss_pred CCCccEEEeccCCC-CCcCCc-ccC--CCCCcceEeecCCCCCcccCC-C-CCCCCcceeEeccCcccccccchhccccc
Q 045261 4 PESISSVEIRRCEK-LGALPS-DMH--KLNSLQDLDIRECPSIVSFPE-E-GFPTNLTSLAIGEDMKMLYKGLVQWGLHR 77 (227)
Q Consensus 4 ~~~L~~L~l~~~~~-l~~lp~-~~~--~l~~L~~L~l~~c~~l~~~~~-~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~ 77 (227)
+++|+.|++++|.. +..++. .+. ..++|+.|+++++. +..+++ . ..+++|+.|++ +++ .+.+.+++..+..
T Consensus 352 l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L-~~N-~l~~~~~~~~~~~ 428 (680)
T 1ziw_A 352 LINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNK-ISKIESDAFSWLGHLEVLDL-GLN-EIGQELTGQEWRG 428 (680)
T ss_dssp CTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSC-CCEECTTTTTTCTTCCEEEC-CSS-CCEEECCSGGGTT
T ss_pred ccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCC-CCeEChhhhhCCCCCCEEeC-CCC-cCccccCcccccC
Confidence 68999999999753 233332 222 23689999999986 555543 3 78899999999 774 4443444456778
Q ss_pred CCccceEEeccCCCCCcc---------------------------CccCcCCCCCCccceEEEecCCCccccCCCCCCcc
Q 045261 78 LTSLRWLLIERCDESECF---------------------------PDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFH 130 (227)
Q Consensus 78 l~~L~~L~l~~~~~l~~l---------------------------~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~ 130 (227)
+++|++|++++|. +..+ |..+. .+++|+.|++++ +.+..++ ...+.
T Consensus 429 l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~---~l~~L~~L~Ls~-N~l~~i~--~~~~~ 501 (680)
T 1ziw_A 429 LENIFEIYLSYNK-YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ---PLRNLTILDLSN-NNIANIN--DDMLE 501 (680)
T ss_dssp CTTCCEEECCSCS-EEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT---TCTTCCEEECCS-SCCCCCC--TTTTT
T ss_pred cccccEEecCCCC-cceeChhhhhcCcccccchhccccccccccCCcccc---cCCCCCEEECCC-CCCCcCC--hhhhc
Confidence 8888888888763 3222 22222 345566666655 3444444 24455
Q ss_pred CCCCccEEeecCCCCCccCCC----------CCCCCccceeeecCCCCCCCCCCC--CCCCCCcEEeecCC
Q 045261 131 SLTSLRRLLIQDCPNLTSLPK----------VGLPSSLLDLCIFNCPNLTSLPKV--GLPSSLLELTIFDC 189 (227)
Q Consensus 131 ~l~~L~~L~l~~c~~l~~~~~----------~~~~~~L~~l~i~~c~~l~~~~~~--~~~~~L~~L~l~~c 189 (227)
++++|++|+++++ .+..++. ....++|+.|+++++ .++.+|.. ..+++|++|+++++
T Consensus 502 ~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~L~~L~Ls~N 570 (680)
T 1ziw_A 502 GLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFKDLFELKIIDLGLN 570 (680)
T ss_dssp TCTTCCEEECCSS-CCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cccccCEEeCCCC-CccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHHcccccCcceeECCCC
Confidence 6666666666663 3443311 123456666676664 34455543 33677777777654
No 76
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.50 E-value=4.5e-13 Score=102.95 Aligned_cols=146 Identities=23% Similarity=0.289 Sum_probs=105.4
Q ss_pred cEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCccceEE
Q 045261 8 SSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLL 85 (227)
Q Consensus 8 ~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~ 85 (227)
+.++.++ ..++.+|..+. ++|++|+++++. +..++.. ..+++|+.|++ ++ +.+. .+++..+..+++|++|+
T Consensus 22 ~~v~c~~-~~l~~ip~~~~--~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L-~~-N~l~-~i~~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 22 TTVDCRS-KRHASVPAGIP--TNAQILYLHDNQ-ITKLEPGVFDSLINLKELYL-GS-NQLG-ALPVGVFDSLTQLTVLD 94 (229)
T ss_dssp TEEECTT-SCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEEC-CS-SCCC-CCCTTTTTTCTTCCEEE
T ss_pred CEeEccC-CCcCccCCCCC--CCCCEEEcCCCc-cCccCHHHhhCccCCcEEEC-CC-CCCC-CcChhhcccCCCcCEEE
Confidence 4566666 45677776443 788888888864 5555433 67788899988 66 4454 55555578888899999
Q ss_pred eccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCCccceeee
Q 045261 86 IERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPSSLLDLCI 163 (227)
Q Consensus 86 l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~l~i 163 (227)
++++ .++.++.... ..+++|+.|++++ +.+..+| ..+..+++|++|++++ +.+..++.. ...++|+.|++
T Consensus 95 Ls~N-~l~~l~~~~~--~~l~~L~~L~Ls~-N~l~~lp---~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l 166 (229)
T 3e6j_A 95 LGTN-QLTVLPSAVF--DRLVHLKELFMCC-NKLTELP---RGIERLTHLTHLALDQ-NQLKSIPHGAFDRLSSLTHAYL 166 (229)
T ss_dssp CCSS-CCCCCCTTTT--TTCTTCCEEECCS-SCCCSCC---TTGGGCTTCSEEECCS-SCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCC-cCCccChhHh--CcchhhCeEeccC-CcccccC---cccccCCCCCEEECCC-CcCCccCHHHHhCCCCCCEEEe
Confidence 8887 6777765432 1678889999887 6777888 7788888999999988 577777754 34578888888
Q ss_pred cCCCC
Q 045261 164 FNCPN 168 (227)
Q Consensus 164 ~~c~~ 168 (227)
++++.
T Consensus 167 ~~N~~ 171 (229)
T 3e6j_A 167 FGNPW 171 (229)
T ss_dssp TTSCB
T ss_pred eCCCc
Confidence 87653
No 77
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.49 E-value=5.6e-13 Score=114.05 Aligned_cols=152 Identities=20% Similarity=0.200 Sum_probs=66.4
Q ss_pred CCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccc-cchhcccccCCccceEEeccCCCCCc-cCccCcCCC
Q 045261 27 KLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYK-GLVQWGLHRLTSLRWLLIERCDESEC-FPDGMMGMT 103 (227)
Q Consensus 27 ~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~-~~~~~~~~~l~~L~~L~l~~~~~l~~-l~~~~~~~~ 103 (227)
.+++|++|+++++......+.. ..+++|+.|++ +++ .+.+ ...+..++.+++|++|+++++ .+.. +|.... .
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L-~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~l~~~~~--~ 396 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLIL-QMN-QLKELSKIAEMTTQMKSLQQLDISQN-SVSYDEKKGDC--S 396 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEEC-CSS-CCCBHHHHHHHHTTCTTCCEEECCSS-CCBCCGGGCSC--C
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEc-cCC-ccCccccchHHHhhCCCCCEEECCCC-cCCcccccchh--c
Confidence 4444555555444322212222 44455555555 332 2221 011123444555555555554 2222 443311 1
Q ss_pred CCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC-CCCCccceeeecCCCCCCCCCCC--CCCCC
Q 045261 104 LPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV-GLPSSLLDLCIFNCPNLTSLPKV--GLPSS 180 (227)
Q Consensus 104 ~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~l~i~~c~~l~~~~~~--~~~~~ 180 (227)
.+++|++|+++++.-...++ ..+. ++|++|++++| .++.+|.. ...++|++|+++++ .++.+|.. ..+++
T Consensus 397 ~l~~L~~L~Ls~N~l~~~~~---~~l~--~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~ 469 (520)
T 2z7x_B 397 WTKSLLSLNMSSNILTDTIF---RCLP--PRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASN-QLKSVPDGIFDRLTS 469 (520)
T ss_dssp CCTTCCEEECCSSCCCGGGG---GSCC--TTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred cCccCCEEECcCCCCCcchh---hhhc--ccCCEEECCCC-cccccchhhhcCCCCCEEECCCC-cCCccCHHHhccCCc
Confidence 34455555555533223333 2221 45555555553 44555542 23455666666654 34455542 22456
Q ss_pred CcEEeecCCc
Q 045261 181 LLELTIFDCP 190 (227)
Q Consensus 181 L~~L~l~~c~ 190 (227)
|++|++++++
T Consensus 470 L~~L~l~~N~ 479 (520)
T 2z7x_B 470 LQKIWLHTNP 479 (520)
T ss_dssp CCEEECCSSC
T ss_pred ccEEECcCCC
Confidence 6666666543
No 78
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.48 E-value=4.7e-13 Score=101.14 Aligned_cols=160 Identities=23% Similarity=0.291 Sum_probs=96.5
Q ss_pred EEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCccceEEe
Q 045261 9 SVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLI 86 (227)
Q Consensus 9 ~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l 86 (227)
.++.++ ..+..+|..+ .++|++|+++++. +..++.. ..+++|++|++ ++ +.++ .+++..+..+++|++|++
T Consensus 11 ~v~c~~-~~l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l-~~-n~l~-~~~~~~~~~l~~L~~L~L 83 (208)
T 2o6s_A 11 TVECYS-QGRTSVPTGI--PAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYL-GG-NKLQ-SLPNGVFNKLTSLTYLNL 83 (208)
T ss_dssp EEECCS-SCCSSCCSCC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEEC-CS-SCCC-CCCTTTTTTCTTCCEEEC
T ss_pred EEEecC-CCccCCCCCC--CCCCcEEEcCCCc-cCcCChhhhcccccCcEEEC-CC-CccC-ccChhhcCCCCCcCEEEC
Confidence 344444 3455566433 3567777777753 5555543 56777777777 55 4454 444444667777777777
Q ss_pred ccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCCccceeeec
Q 045261 87 ERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPSSLLDLCIF 164 (227)
Q Consensus 87 ~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~l~i~ 164 (227)
+++ .+..++.... ..+++|++|++++ +.+..++ ...+..+++|++|++++ +.+..++.. ...++|++|+++
T Consensus 84 s~n-~l~~~~~~~~--~~l~~L~~L~L~~-N~l~~~~--~~~~~~l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~ 156 (208)
T 2o6s_A 84 STN-QLQSLPNGVF--DKLTQLKELALNT-NQLQSLP--DGVFDKLTQLKDLRLYQ-NQLKSVPDGVFDRLTSLQYIWLH 156 (208)
T ss_dssp CSS-CCCCCCTTTT--TTCTTCCEEECCS-SCCCCCC--TTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCC-cCCccCHhHh--cCccCCCEEEcCC-CcCcccC--HhHhccCCcCCEEECCC-CccceeCHHHhccCCCccEEEec
Confidence 776 5556655431 1567777777776 4566665 34466777778887777 356666553 345677777777
Q ss_pred CCCCCCCCCCCCCCCCCcEEeecC
Q 045261 165 NCPNLTSLPKVGLPSSLLELTIFD 188 (227)
Q Consensus 165 ~c~~l~~~~~~~~~~~L~~L~l~~ 188 (227)
+++.. +.+++|+.|+++.
T Consensus 157 ~N~~~------~~~~~l~~L~~~~ 174 (208)
T 2o6s_A 157 DNPWD------CTCPGIRYLSEWI 174 (208)
T ss_dssp SCCBC------CCTTTTHHHHHHH
T ss_pred CCCee------cCCCCHHHHHHHH
Confidence 76432 2234555555553
No 79
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.48 E-value=2.6e-12 Score=112.20 Aligned_cols=75 Identities=32% Similarity=0.502 Sum_probs=37.1
Q ss_pred CCccEEeecCCCCCccCCCCCCCCccceeeecCCCCCCCCCCCCCCCCCcEEeecCCchhhhhhcccCCCCcccccccce
Q 045261 133 TSLRRLLIQDCPNLTSLPKVGLPSSLLDLCIFNCPNLTSLPKVGLPSSLLELTIFDCPKLRKECKRDKGKGWSKIANIPM 212 (227)
Q Consensus 133 ~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~i~~c~~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~ 212 (227)
++|++|++++ +.++.+| ..+++|+.|+++++ .++.+|. .+++|++|++++|. ++ ..+..+..+.++..
T Consensus 221 ~~L~~L~Ls~-N~L~~lp--~~l~~L~~L~Ls~N-~L~~lp~--~~~~L~~L~Ls~N~-L~-----~lp~~l~~l~~L~~ 288 (622)
T 3g06_A 221 SGLKELIVSG-NRLTSLP--VLPSELKELMVSGN-RLTSLPM--LPSGLLSLSVYRNQ-LT-----RLPESLIHLSSETT 288 (622)
T ss_dssp TTCCEEECCS-SCCSCCC--CCCTTCCEEECCSS-CCSCCCC--CCTTCCEEECCSSC-CC-----SCCGGGGGSCTTCE
T ss_pred CCCCEEEccC-CccCcCC--CCCCcCcEEECCCC-CCCcCCc--ccccCcEEeCCCCC-CC-----cCCHHHhhccccCE
Confidence 4455555555 2444444 23455555665554 3445554 45566666666552 22 11223444555666
Q ss_pred EEeccCC
Q 045261 213 FLIDDTD 219 (227)
Q Consensus 213 ~~~~~~~ 219 (227)
+.+.+..
T Consensus 289 L~L~~N~ 295 (622)
T 3g06_A 289 VNLEGNP 295 (622)
T ss_dssp EECCSCC
T ss_pred EEecCCC
Confidence 6665543
No 80
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.47 E-value=6.9e-14 Score=109.76 Aligned_cols=160 Identities=19% Similarity=0.207 Sum_probs=90.0
Q ss_pred EEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccceEEecc
Q 045261 9 SVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIER 88 (227)
Q Consensus 9 ~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~ 88 (227)
.++++++ .++.++ .+..+++|++|+++++ .+..++....+++|+.|++ ++ +.+. .+.+ +..+++|++|++++
T Consensus 23 ~l~l~~~-~i~~~~-~~~~l~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~L-~~-N~i~-~~~~--l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 23 KQNLGKQ-SVTDLV-SQKELSGVQNFNGDNS-NIQSLAGMQFFTNLKELHL-SH-NQIS-DLSP--LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHTCS-CTTSEE-CHHHHTTCSEEECTTS-CCCCCTTGGGCTTCCEEEC-CS-SCCC-CCGG--GTTCSSCCEEECCS
T ss_pred HHHhcCC-Cccccc-chhhcCcCcEEECcCC-CcccchHHhhCCCCCEEEC-CC-CccC-CChh--hccCCCCCEEECCC
Confidence 3344442 334443 3556666667777665 3555553355666777776 54 3343 2222 56666677777766
Q ss_pred CCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccceeeecCCCC
Q 045261 89 CDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCIFNCPN 168 (227)
Q Consensus 89 ~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~i~~c~~ 168 (227)
+ .++.++... . ++|+.|++++ +.+..++ .+..+++|++|++++ +.++.++....+++|++|+++++.
T Consensus 95 N-~l~~l~~~~----~-~~L~~L~L~~-N~l~~~~----~l~~l~~L~~L~Ls~-N~i~~~~~l~~l~~L~~L~L~~N~- 161 (263)
T 1xeu_A 95 N-RLKNLNGIP----S-ACLSRLFLDN-NELRDTD----SLIHLKNLEILSIRN-NKLKSIVMLGFLSKLEVLDLHGNE- 161 (263)
T ss_dssp S-CCSCCTTCC----C-SSCCEEECCS-SCCSBSG----GGTTCTTCCEEECTT-SCCCBCGGGGGCTTCCEEECTTSC-
T ss_pred C-ccCCcCccc----c-CcccEEEccC-CccCCCh----hhcCcccccEEECCC-CcCCCChHHccCCCCCEEECCCCc-
Confidence 5 555555432 2 6667777766 3555543 356666777777766 345555543445666667666643
Q ss_pred CCCCCCCCCCCCCcEEeecCC
Q 045261 169 LTSLPKVGLPSSLLELTIFDC 189 (227)
Q Consensus 169 l~~~~~~~~~~~L~~L~l~~c 189 (227)
+..+.....+++|+.|+++++
T Consensus 162 i~~~~~l~~l~~L~~L~l~~N 182 (263)
T 1xeu_A 162 ITNTGGLTRLKKVNWIDLTGQ 182 (263)
T ss_dssp CCBCTTSTTCCCCCEEEEEEE
T ss_pred CcchHHhccCCCCCEEeCCCC
Confidence 333333344566777776664
No 81
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.46 E-value=6.9e-13 Score=114.48 Aligned_cols=177 Identities=17% Similarity=0.146 Sum_probs=101.9
Q ss_pred CCCCCcceEeecCCCCCccc---CCC-CCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCc--cC
Q 045261 26 HKLNSLQDLDIRECPSIVSF---PEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPD--GM 99 (227)
Q Consensus 26 ~~l~~L~~L~l~~c~~l~~~---~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~--~~ 99 (227)
..+++|++|+++++. +... +.. ..+++|+.|++ +++. +. ..++ .+..+++|++|+++++ .+...+. .+
T Consensus 344 ~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~l-~~n~-l~-~~~~-~~~~l~~L~~L~l~~n-~l~~~~~~~~~ 417 (570)
T 2z63_A 344 VDLPSLEFLDLSRNG-LSFKGCCSQSDFGTTSLKYLDL-SFNG-VI-TMSS-NFLGLEQLEHLDFQHS-NLKQMSEFSVF 417 (570)
T ss_dssp CBCTTCCEEECCSSC-CBEEEEEEHHHHTCSCCCEEEC-CSCS-EE-EEEE-EEETCTTCCEEECTTS-EEESCTTSCTT
T ss_pred ccCCCCCEEeCcCCc-cCccccccccccccCccCEEEC-CCCc-cc-cccc-cccccCCCCEEEccCC-ccccccchhhh
Confidence 344555555555543 2222 111 34556666666 5432 22 2222 2566677777777765 3333322 22
Q ss_pred cCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCC-ccCCCC-CCCCccceeeecCCCCCCCCCC-CC
Q 045261 100 MGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNL-TSLPKV-GLPSSLLDLCIFNCPNLTSLPK-VG 176 (227)
Q Consensus 100 ~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l-~~~~~~-~~~~~L~~l~i~~c~~l~~~~~-~~ 176 (227)
. .+++|++|++++|......+ ..+.++++|++|++++|.-. ..+|.. ...++|++|++++|...+..+. ..
T Consensus 418 ~---~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 491 (570)
T 2z63_A 418 L---SLRNLIYLDISHTHTRVAFN---GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN 491 (570)
T ss_dssp T---TCTTCCEEECTTSCCEECCT---TTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTT
T ss_pred h---cCCCCCEEeCcCCcccccch---hhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhh
Confidence 2 57788888888754444445 67778888888888886432 235542 4567888889888764443343 24
Q ss_pred CCCCCcEEeecCCchhhhhhcccCCCCcccccccceEEeccCC
Q 045261 177 LPSSLLELTIFDCPKLRKECKRDKGKGWSKIANIPMFLIDDTD 219 (227)
Q Consensus 177 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~ 219 (227)
.+++|++|++++|. ++ ......+..+.++..+.+.+..
T Consensus 492 ~l~~L~~L~l~~n~-l~----~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 492 SLSSLQVLNMASNQ-LK----SVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp TCTTCCEEECCSSC-CS----CCCTTTTTTCTTCCEEECCSSC
T ss_pred cccCCCEEeCCCCc-CC----CCCHHHhhcccCCcEEEecCCc
Confidence 57889999998874 22 1122234556667777776653
No 82
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.45 E-value=5e-12 Score=106.66 Aligned_cols=157 Identities=26% Similarity=0.387 Sum_probs=103.2
Q ss_pred CCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccceE
Q 045261 5 ESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWL 84 (227)
Q Consensus 5 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L 84 (227)
++|++|++++| .++.+| .++++++|++|+++++. +..+|. ...+|++|++ +++ .++ .+ + .++.+++|++|
T Consensus 131 ~~L~~L~L~~n-~l~~lp-~~~~l~~L~~L~l~~N~-l~~lp~--~~~~L~~L~L-~~n-~l~-~l-~-~~~~l~~L~~L 200 (454)
T 1jl5_A 131 PLLEYLGVSNN-QLEKLP-ELQNSSFLKIIDVDNNS-LKKLPD--LPPSLEFIAA-GNN-QLE-EL-P-ELQNLPFLTAI 200 (454)
T ss_dssp TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSC-CSCCCC--CCTTCCEEEC-CSS-CCS-SC-C-CCTTCTTCCEE
T ss_pred CCCCEEECcCC-CCCCCc-ccCCCCCCCEEECCCCc-CcccCC--CcccccEEEC-cCC-cCC-cC-c-cccCCCCCCEE
Confidence 57777787775 355577 47888888888888764 555654 3468888888 663 454 23 3 47788888888
Q ss_pred EeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccceeeec
Q 045261 85 LIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCIF 164 (227)
Q Consensus 85 ~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~i~ 164 (227)
+++++ .+..+|. .+++|++|+++++ .+..+| . +..+++|++|++++ +.+..+|. ..++|++|+++
T Consensus 201 ~l~~N-~l~~l~~------~~~~L~~L~l~~n-~l~~lp---~-~~~l~~L~~L~l~~-N~l~~l~~--~~~~L~~L~l~ 265 (454)
T 1jl5_A 201 YADNN-SLKKLPD------LPLSLESIVAGNN-ILEELP---E-LQNLPFLTTIYADN-NLLKTLPD--LPPSLEALNVR 265 (454)
T ss_dssp ECCSS-CCSSCCC------CCTTCCEEECCSS-CCSSCC---C-CTTCTTCCEEECCS-SCCSSCCS--CCTTCCEEECC
T ss_pred ECCCC-cCCcCCC------CcCcccEEECcCC-cCCccc---c-cCCCCCCCEEECCC-CcCCcccc--cccccCEEECC
Confidence 88876 5555654 2357888888874 566676 3 67788888888887 45666664 34667777777
Q ss_pred CCCCCCCCCCCCCCCCCcEEeecCC
Q 045261 165 NCPNLTSLPKVGLPSSLLELTIFDC 189 (227)
Q Consensus 165 ~c~~l~~~~~~~~~~~L~~L~l~~c 189 (227)
++. ++.+|. .+++|++|++++|
T Consensus 266 ~N~-l~~l~~--~~~~L~~L~ls~N 287 (454)
T 1jl5_A 266 DNY-LTDLPE--LPQSLTFLDVSEN 287 (454)
T ss_dssp SSC-CSCCCC--CCTTCCEEECCSS
T ss_pred CCc-ccccCc--ccCcCCEEECcCC
Confidence 654 333443 2345555555544
No 83
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.45 E-value=3.2e-12 Score=97.61 Aligned_cols=144 Identities=17% Similarity=0.263 Sum_probs=88.2
Q ss_pred EEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCccceEEe
Q 045261 9 SVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLI 86 (227)
Q Consensus 9 ~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l 86 (227)
.++.++ ..++++|..+. ++|+.|+++++ .+..++.. ..+++|+.|++ ++ +.+. .+.+..+..+++|++|++
T Consensus 15 ~v~c~~-~~l~~iP~~l~--~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~L-s~-N~i~-~~~~~~~~~l~~L~~L~L 87 (220)
T 2v9t_B 15 IVDCRG-KGLTEIPTNLP--ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDL-SN-NQIS-ELAPDAFQGLRSLNSLVL 87 (220)
T ss_dssp EEECTT-SCCSSCCSSCC--TTCCEEECCSS-CCCEECTTSSTTCTTCCEEEC-CS-SCCC-EECTTTTTTCSSCCEEEC
T ss_pred EEEcCC-CCcCcCCCccC--cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEEC-CC-CcCC-CcCHHHhhCCcCCCEEEC
Confidence 455555 35666665443 56777777775 35555543 56677777777 55 3444 344455777777777777
Q ss_pred ccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCCccceeeec
Q 045261 87 ERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPSSLLDLCIF 164 (227)
Q Consensus 87 ~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~l~i~ 164 (227)
+++ .++.+|.... ..+++|+.|++++ +.+..++ ...+..+++|++|++++ +.+..++.. ...++|++|+++
T Consensus 88 s~N-~l~~l~~~~f--~~l~~L~~L~L~~-N~l~~~~--~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~ 160 (220)
T 2v9t_B 88 YGN-KITELPKSLF--EGLFSLQLLLLNA-NKINCLR--VDAFQDLHNLNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLA 160 (220)
T ss_dssp CSS-CCCCCCTTTT--TTCTTCCEEECCS-SCCCCCC--TTTTTTCTTCCEEECCS-SCCSCCCTTTTTTCTTCCEEECC
T ss_pred CCC-cCCccCHhHc--cCCCCCCEEECCC-CCCCEeC--HHHcCCCCCCCEEECCC-CcCCEECHHHHhCCCCCCEEEeC
Confidence 776 6666665432 1467777777777 4555554 36677777777777777 456665543 223455555555
Q ss_pred CC
Q 045261 165 NC 166 (227)
Q Consensus 165 ~c 166 (227)
++
T Consensus 161 ~N 162 (220)
T 2v9t_B 161 QN 162 (220)
T ss_dssp SS
T ss_pred CC
Confidence 43
No 84
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.45 E-value=3.7e-12 Score=97.81 Aligned_cols=147 Identities=27% Similarity=0.316 Sum_probs=104.5
Q ss_pred cceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCccCcCCCCCCccce
Q 045261 31 LQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVH 110 (227)
Q Consensus 31 L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~ 110 (227)
.+.++.++. .+..+|.. ..++|+.|++ ++ +.+. .+.+..+..+++|++|+++++ .+..++.... ..+++|+.
T Consensus 21 ~~~v~c~~~-~l~~ip~~-~~~~L~~L~L-s~-n~i~-~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~--~~l~~L~~ 92 (229)
T 3e6j_A 21 GTTVDCRSK-RHASVPAG-IPTNAQILYL-HD-NQIT-KLEPGVFDSLINLKELYLGSN-QLGALPVGVF--DSLTQLTV 92 (229)
T ss_dssp TTEEECTTS-CCSSCCSC-CCTTCSEEEC-CS-SCCC-CCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT--TTCTTCCE
T ss_pred CCEeEccCC-CcCccCCC-CCCCCCEEEc-CC-CccC-ccCHHHhhCccCCcEEECCCC-CCCCcChhhc--ccCCCcCE
Confidence 456666553 46667763 5588888988 66 4554 444556788888999998887 6677775432 26788889
Q ss_pred EEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC-CCCCccceeeecCCCCCCCCCCC--CCCCCCcEEeec
Q 045261 111 LNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV-GLPSSLLDLCIFNCPNLTSLPKV--GLPSSLLELTIF 187 (227)
Q Consensus 111 L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~l~i~~c~~l~~~~~~--~~~~~L~~L~l~ 187 (227)
|++++ +.+..++ ...+..+++|++|++++ +.+..+|.. ...++|++|+++++ .++.++.. ..+++|+.|++.
T Consensus 93 L~Ls~-N~l~~l~--~~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 93 LDLGT-NQLTVLP--SAVFDRLVHLKELFMCC-NKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLF 167 (229)
T ss_dssp EECCS-SCCCCCC--TTTTTTCTTCCEEECCS-SCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECT
T ss_pred EECCC-CcCCccC--hhHhCcchhhCeEeccC-CcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEee
Confidence 99888 5777776 35567888899999888 567777764 45678888888875 45666643 336888888888
Q ss_pred CCc
Q 045261 188 DCP 190 (227)
Q Consensus 188 ~c~ 190 (227)
+++
T Consensus 168 ~N~ 170 (229)
T 3e6j_A 168 GNP 170 (229)
T ss_dssp TSC
T ss_pred CCC
Confidence 754
No 85
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.44 E-value=4.4e-12 Score=114.62 Aligned_cols=108 Identities=16% Similarity=0.116 Sum_probs=82.1
Q ss_pred CCCCccEEEeccCCCCCcC-CcccCCCCCcceEeecCCCCCccc-CCC-CCCCCcceeEeccCcccccccch-hcccccC
Q 045261 3 LPESISSVEIRRCEKLGAL-PSDMHKLNSLQDLDIRECPSIVSF-PEE-GFPTNLTSLAIGEDMKMLYKGLV-QWGLHRL 78 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~l-p~~~~~l~~L~~L~l~~c~~l~~~-~~~-~~l~~L~~L~l~~~~~~l~~~~~-~~~~~~l 78 (227)
-+++|+.|++++|.....+ |..++++++|++|+++++. +..+ |.. ..+++|++|++ +++ .+.+..+ ...++.+
T Consensus 46 ~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L-s~n-~l~~~~~~~~~~~~L 122 (844)
T 3j0a_A 46 FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDAFQGLFHLFELRL-YFC-GLSDAVLKDGYFRNL 122 (844)
T ss_dssp SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC-CCEECTTSSCSCSSCCCEEC-TTC-CCSSCCSTTCCCSSC
T ss_pred ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc-CcccCHhHccCCcccCEeeC-cCC-CCCcccccCcccccc
Confidence 4689999999998777777 6789999999999999975 5555 444 88999999999 775 4543222 2247899
Q ss_pred CccceEEeccCCCCCccC--ccCcCCCCCCccceEEEecCC
Q 045261 79 TSLRWLLIERCDESECFP--DGMMGMTLPTSLVHLNIVEFQ 117 (227)
Q Consensus 79 ~~L~~L~l~~~~~l~~l~--~~~~~~~~~~~L~~L~l~~~~ 117 (227)
++|++|+++++ .+..++ ..+. .+++|++|+++++.
T Consensus 123 ~~L~~L~Ls~N-~l~~~~~~~~~~---~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 123 KALTRLDLSKN-QIRSLYLHPSFG---KLNSLKSIDFSSNQ 159 (844)
T ss_dssp SSCCEEEEESC-CCCCCCCCGGGG---TCSSCCEEEEESSC
T ss_pred CCCCEEECCCC-cccccccchhHh---hCCCCCEEECCCCc
Confidence 99999999997 454443 3344 78899999999843
No 86
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.44 E-value=5.4e-13 Score=97.42 Aligned_cols=137 Identities=17% Similarity=0.240 Sum_probs=99.1
Q ss_pred CCCCCccEEEeccCCCC-CcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCc
Q 045261 2 RLPESISSVEIRRCEKL-GALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTS 80 (227)
Q Consensus 2 ~~~~~L~~L~l~~~~~l-~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~ 80 (227)
..+++|+.|++++|... +.+|..+..+++|++|++++|. +..+.....+++|+.|++ +++ .+.+. .+..+..+++
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L-s~N-~l~~~-~~~~~~~l~~ 96 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVG-LISVSNLPKLPKLKKLEL-SEN-RIFGG-LDMLAEKLPN 96 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSC-CCCCSSCCCCSSCCEEEE-ESC-CCCSC-CCHHHHHCTT
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCC-CCChhhhccCCCCCEEEC-cCC-cCchH-HHHHHhhCCC
Confidence 35678999999987533 3788778888999999998875 666633377888999998 664 45422 3444666888
Q ss_pred cceEEeccCCCCCccC--ccCcCCCCCCccceEEEecCCCccccCCCCC----CccCCCCccEEeecCCCCCccCCC
Q 045261 81 LRWLLIERCDESECFP--DGMMGMTLPTSLVHLNIVEFQKLKNLSSSSS----GFHSLTSLRRLLIQDCPNLTSLPK 151 (227)
Q Consensus 81 L~~L~l~~~~~l~~l~--~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~----~l~~l~~L~~L~l~~c~~l~~~~~ 151 (227)
|++|++++| .++.++ ..+. .+++|+.|++++ +.+..++ . .+..+++|++|++++| .+.++|.
T Consensus 97 L~~L~Ls~N-~l~~~~~~~~l~---~l~~L~~L~l~~-N~l~~~~---~~~~~~~~~l~~L~~L~l~~n-~~~~~~~ 164 (168)
T 2ell_A 97 LTHLNLSGN-KLKDISTLEPLK---KLECLKSLDLFN-CEVTNLN---DYRESVFKLLPQLTYLDGYDR-EDQEAPD 164 (168)
T ss_dssp CCEEECBSS-SCCSSGGGGGGS---SCSCCCEEECCS-SGGGTST---THHHHHHTTCSSCCEETTEET-TSCBCCS
T ss_pred CCEEeccCC-ccCcchhHHHHh---cCCCCCEEEeeC-CcCcchH---HHHHHHHHhCccCcEecCCCC-Chhhccc
Confidence 999999887 677665 3443 678888998887 5666776 4 6778888888888885 4555554
No 87
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.43 E-value=4.1e-13 Score=108.02 Aligned_cols=174 Identities=11% Similarity=0.086 Sum_probs=123.3
Q ss_pred CCCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC------------------CCCCCcceeEeccCcc
Q 045261 3 LPESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE------------------GFPTNLTSLAIGEDMK 64 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~------------------~~l~~L~~L~l~~~~~ 64 (227)
-+++|+.|++++|. +...+. +..+++|++|+++++. +..++.. ..+++|+.|++ ++ +
T Consensus 56 ~l~~L~~L~Ls~n~-l~~~~~-~~~l~~L~~L~Ls~n~-l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l-~~-N 130 (317)
T 3o53_A 56 PFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNY-VQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYL-AN-N 130 (317)
T ss_dssp TCTTCCEEECTTSC-CEEEEE-ETTCTTCCEEECCSSE-EEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEEC-CS-S
T ss_pred CCCcCCEEECCCCc-CCcchh-hhhcCCCCEEECcCCc-cccccCCCCcCEEECCCCccCCcCccccCCCCEEEC-CC-C
Confidence 35788888888864 433333 7777778888877753 3332210 24577888888 65 4
Q ss_pred cccccchhcccccCCccceEEeccCCCCCccCc-cCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCC
Q 045261 65 MLYKGLVQWGLHRLTSLRWLLIERCDESECFPD-GMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDC 143 (227)
Q Consensus 65 ~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c 143 (227)
.+. ...+..+..+++|++|+++++ .+..++. .+. ..+++|++|++++ +.+..++ . ...+++|++|++++
T Consensus 131 ~l~-~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~--~~l~~L~~L~L~~-N~l~~~~---~-~~~l~~L~~L~Ls~- 200 (317)
T 3o53_A 131 KIT-MLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELA--ASSDTLEHLNLQY-NFIYDVK---G-QVVFAKLKTLDLSS- 200 (317)
T ss_dssp CCC-SGGGBCTGGGSSEEEEECTTS-CCCEEEGGGGG--GGTTTCCEEECTT-SCCCEEE---C-CCCCTTCCEEECCS-
T ss_pred CCC-CccchhhhccCCCCEEECCCC-CCCcccHHHHh--hccCcCCEEECCC-CcCcccc---c-ccccccCCEEECCC-
Confidence 454 445556788999999999998 5655543 331 1468999999998 5677776 2 33589999999999
Q ss_pred CCCccCCCC-CCCCccceeeecCCCCCCCCCCC-CCCCCCcEEeecCCchh
Q 045261 144 PNLTSLPKV-GLPSSLLDLCIFNCPNLTSLPKV-GLPSSLLELTIFDCPKL 192 (227)
Q Consensus 144 ~~l~~~~~~-~~~~~L~~l~i~~c~~l~~~~~~-~~~~~L~~L~l~~c~~l 192 (227)
+.+..++.. ...++|++|+++++ .++.+|.. ..+++|+.|++++++..
T Consensus 201 N~l~~l~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 201 NKLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGNGFH 250 (317)
T ss_dssp SCCCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTCCCB
T ss_pred CcCCcchhhhcccCcccEEECcCC-cccchhhHhhcCCCCCEEEccCCCcc
Confidence 567777654 45689999999997 45667653 45789999999998754
No 88
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.43 E-value=6.3e-12 Score=108.65 Aligned_cols=153 Identities=18% Similarity=0.118 Sum_probs=85.9
Q ss_pred CCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCccccccc-chhcccccCCccceEEeccCCCCCc-cCccCcCC
Q 045261 26 HKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKG-LVQWGLHRLTSLRWLLIERCDESEC-FPDGMMGM 102 (227)
Q Consensus 26 ~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~-~~~~~~~~l~~L~~L~l~~~~~l~~-l~~~~~~~ 102 (227)
..+++|++|+++++......+.. ..+++|+.|++ ++ +.+.+. ..+..+..+++|++|+++++ .+.. +|....
T Consensus 350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L-~~-N~l~~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~-- 424 (562)
T 3a79_B 350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLIL-QR-NGLKNFFKVALMTKNMSSLETLDVSLN-SLNSHAYDRTC-- 424 (562)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEEC-CS-SCCCBTTHHHHTTTTCTTCCEEECTTS-CCBSCCSSCCC--
T ss_pred cCCCCceEEECCCCccccchhhhhcccCCCCEEEC-CC-CCcCCcccchhhhcCCCCCCEEECCCC-cCCCccChhhh--
Confidence 45566666666665422223333 55666777776 55 334311 11234566667777777766 3333 554422
Q ss_pred CCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC-CCCCccceeeecCCCCCCCCCCC--CCCC
Q 045261 103 TLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV-GLPSSLLDLCIFNCPNLTSLPKV--GLPS 179 (227)
Q Consensus 103 ~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~l~i~~c~~l~~~~~~--~~~~ 179 (227)
..+++|++|+++++.-...++ ..+. ++|++|+++++ .++.+|.. ...++|++|+++++. ++.+|.. ..++
T Consensus 425 ~~l~~L~~L~l~~n~l~~~~~---~~l~--~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~ 497 (562)
T 3a79_B 425 AWAESILVLNLSSNMLTGSVF---RCLP--PKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQ-LKSVPDGVFDRLT 497 (562)
T ss_dssp CCCTTCCEEECCSSCCCGGGG---SSCC--TTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSC-CCCCCTTSTTTCT
T ss_pred cCcccCCEEECCCCCCCcchh---hhhc--CcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCC-CCCCCHHHHhcCC
Confidence 145667777776644333343 2222 57777777773 56666653 345677777777753 4566653 3467
Q ss_pred CCcEEeecCCc
Q 045261 180 SLLELTIFDCP 190 (227)
Q Consensus 180 ~L~~L~l~~c~ 190 (227)
+|+.|++++++
T Consensus 498 ~L~~L~l~~N~ 508 (562)
T 3a79_B 498 SLQYIWLHDNP 508 (562)
T ss_dssp TCCCEECCSCC
T ss_pred CCCEEEecCCC
Confidence 77777777654
No 89
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.43 E-value=1e-12 Score=104.49 Aligned_cols=146 Identities=18% Similarity=0.206 Sum_probs=118.8
Q ss_pred CCCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccc
Q 045261 3 LPESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLR 82 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~ 82 (227)
.+++|+.|++++| .++.++. +.++++|++|+++++. +..++....+++|+.|++ +++ .+. .+ ..+..+++|+
T Consensus 66 ~l~~L~~L~L~~n-~l~~~~~-l~~l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L-~~n-~i~-~~--~~l~~l~~L~ 137 (291)
T 1h6t_A 66 YLPNVTKLFLNGN-KLTDIKP-LANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSL-EHN-GIS-DI--NGLVHLPQLE 137 (291)
T ss_dssp GCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEEC-TTS-CCC-CC--GGGGGCTTCC
T ss_pred cCCCCCEEEccCC-ccCCCcc-cccCCCCCEEECCCCc-CCCChhhccCCCCCEEEC-CCC-cCC-CC--hhhcCCCCCC
Confidence 3689999999996 5666766 8999999999999974 666766688999999999 774 554 22 3578899999
Q ss_pred eEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccceee
Q 045261 83 WLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLC 162 (227)
Q Consensus 83 ~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~ 162 (227)
+|+++++ .+..++ .+. .+++|+.|++++ +.+..++ . +..+++|++|++++ +.++.++.....++|+.|+
T Consensus 138 ~L~l~~n-~l~~~~-~l~---~l~~L~~L~L~~-N~l~~~~---~-l~~l~~L~~L~L~~-N~i~~l~~l~~l~~L~~L~ 206 (291)
T 1h6t_A 138 SLYLGNN-KITDIT-VLS---RLTKLDTLSLED-NQISDIV---P-LAGLTKLQNLYLSK-NHISDLRALAGLKNLDVLE 206 (291)
T ss_dssp EEECCSS-CCCCCG-GGG---GCTTCSEEECCS-SCCCCCG---G-GTTCTTCCEEECCS-SCCCBCGGGTTCTTCSEEE
T ss_pred EEEccCC-cCCcch-hhc---cCCCCCEEEccC-Cccccch---h-hcCCCccCEEECCC-CcCCCChhhccCCCCCEEE
Confidence 9999997 677774 333 689999999998 5777776 3 88999999999999 4788887656678999999
Q ss_pred ecCCC
Q 045261 163 IFNCP 167 (227)
Q Consensus 163 i~~c~ 167 (227)
+++++
T Consensus 207 l~~n~ 211 (291)
T 1h6t_A 207 LFSQE 211 (291)
T ss_dssp EEEEE
T ss_pred CcCCc
Confidence 99865
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.43 E-value=1.2e-12 Score=105.05 Aligned_cols=175 Identities=19% Similarity=0.161 Sum_probs=128.9
Q ss_pred CCCCccEEEeccCCCCCcCC----cccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCccccccc-ch-hcc
Q 045261 3 LPESISSVEIRRCEKLGALP----SDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKG-LV-QWG 74 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp----~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~-~~-~~~ 74 (227)
-+++|+.|++++|...+..+ ..+..+++|++|+++++. +..++.. ..+++|++|++ +++.-.... .. ...
T Consensus 115 ~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L-s~N~l~~~~~~~~~~~ 192 (310)
T 4glp_A 115 TGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-SPAFSCEQVRAFPALTSLDL-SDNPGLGERGLMAALC 192 (310)
T ss_dssp CCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-SCCCCTTSCCCCTTCCEEEC-CSCTTCHHHHHHTTSC
T ss_pred cCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC-cchhhHHHhccCCCCCEEEC-CCCCCccchhhhHHHh
Confidence 37899999999976544443 344579999999999975 5555543 68899999999 775433211 11 223
Q ss_pred cccCCccceEEeccCCCCCccCcc----CcCCCCCCccceEEEecCCCcccc-CCCCCCccCC---CCccEEeecCCCCC
Q 045261 75 LHRLTSLRWLLIERCDESECFPDG----MMGMTLPTSLVHLNIVEFQKLKNL-SSSSSGFHSL---TSLRRLLIQDCPNL 146 (227)
Q Consensus 75 ~~~l~~L~~L~l~~~~~l~~l~~~----~~~~~~~~~L~~L~l~~~~~l~~l-~~~~~~l~~l---~~L~~L~l~~c~~l 146 (227)
++.+++|++|++++| .++.++.. +. .+++|++|++++ +.+..+ | ..+..+ ++|++|++++ +.+
T Consensus 193 ~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~---~l~~L~~L~Ls~-N~l~~~~p---~~~~~~~~~~~L~~L~Ls~-N~l 263 (310)
T 4glp_A 193 PHKFPAIQNLALRNT-GMETPTGVCAALAA---AGVQPHSLDLSH-NSLRATVN---PSAPRCMWSSALNSLNLSF-AGL 263 (310)
T ss_dssp TTSSCCCCSCBCCSS-CCCCHHHHHHHHHH---HTCCCSSEECTT-SCCCCCCC---SCCSSCCCCTTCCCEECCS-SCC
T ss_pred hhcCCCCCEEECCCC-CCCchHHHHHHHHh---cCCCCCEEECCC-CCCCccch---hhHHhccCcCcCCEEECCC-CCC
Confidence 468899999999998 66666542 22 568999999998 455554 6 555555 7999999999 578
Q ss_pred ccCCCCCCCCccceeeecCCCCCCCCCCCCCCCCCcEEeecCCc
Q 045261 147 TSLPKVGLPSSLLDLCIFNCPNLTSLPKVGLPSSLLELTIFDCP 190 (227)
Q Consensus 147 ~~~~~~~~~~~L~~l~i~~c~~l~~~~~~~~~~~L~~L~l~~c~ 190 (227)
+.+|.. ..++|++|+++++. ++.+|....+++|++|++++++
T Consensus 264 ~~lp~~-~~~~L~~L~Ls~N~-l~~~~~~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 264 EQVPKG-LPAKLRVLDLSSNR-LNRAPQPDELPEVDNLTLDGNP 305 (310)
T ss_dssp CSCCSC-CCSCCSCEECCSCC-CCSCCCTTSCCCCSCEECSSTT
T ss_pred Cchhhh-hcCCCCEEECCCCc-CCCCchhhhCCCccEEECcCCC
Confidence 888874 45899999999865 5565655567999999999865
No 91
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.42 E-value=1.1e-11 Score=104.58 Aligned_cols=158 Identities=23% Similarity=0.297 Sum_probs=95.8
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccce
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRW 83 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~ 83 (227)
+++|+.|+++++ .++.+|.. +++|++|+++++ .+..++. ..++|++|++ +++ .++ .+ + .++.+++|++
T Consensus 90 ~~~L~~L~l~~n-~l~~lp~~---~~~L~~L~l~~n-~l~~l~~--~~~~L~~L~L-~~n-~l~-~l-p-~~~~l~~L~~ 157 (454)
T 1jl5_A 90 PPHLESLVASCN-SLTELPEL---PQSLKSLLVDNN-NLKALSD--LPPLLEYLGV-SNN-QLE-KL-P-ELQNSSFLKI 157 (454)
T ss_dssp CTTCSEEECCSS-CCSSCCCC---CTTCCEEECCSS-CCSCCCS--CCTTCCEEEC-CSS-CCS-SC-C-CCTTCTTCCE
T ss_pred cCCCCEEEccCC-cCCccccc---cCCCcEEECCCC-ccCcccC--CCCCCCEEEC-cCC-CCC-CC-c-ccCCCCCCCE
Confidence 456777777664 34445542 356777777765 3444443 2367888888 653 444 33 3 4777888888
Q ss_pred EEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccceeee
Q 045261 84 LLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCI 163 (227)
Q Consensus 84 L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~i 163 (227)
|+++++ .++.+|.. +++|++|++++ +.+..+| .++++++|++|+++++ .+..+|. ..++|++|++
T Consensus 158 L~l~~N-~l~~lp~~------~~~L~~L~L~~-n~l~~l~----~~~~l~~L~~L~l~~N-~l~~l~~--~~~~L~~L~l 222 (454)
T 1jl5_A 158 IDVDNN-SLKKLPDL------PPSLEFIAAGN-NQLEELP----ELQNLPFLTAIYADNN-SLKKLPD--LPLSLESIVA 222 (454)
T ss_dssp EECCSS-CCSCCCCC------CTTCCEEECCS-SCCSSCC----CCTTCTTCCEEECCSS-CCSSCCC--CCTTCCEEEC
T ss_pred EECCCC-cCcccCCC------cccccEEECcC-CcCCcCc----cccCCCCCCEEECCCC-cCCcCCC--CcCcccEEEC
Confidence 888876 56666642 35777777777 3555555 3667777777777773 4555554 3356666666
Q ss_pred cCCCCCCCCCCCCCCCCCcEEeecCC
Q 045261 164 FNCPNLTSLPKVGLPSSLLELTIFDC 189 (227)
Q Consensus 164 ~~c~~l~~~~~~~~~~~L~~L~l~~c 189 (227)
++| .++.+|..+.+++|++|+++++
T Consensus 223 ~~n-~l~~lp~~~~l~~L~~L~l~~N 247 (454)
T 1jl5_A 223 GNN-ILEELPELQNLPFLTTIYADNN 247 (454)
T ss_dssp CSS-CCSSCCCCTTCTTCCEEECCSS
T ss_pred cCC-cCCcccccCCCCCCCEEECCCC
Confidence 665 3345554444556666666654
No 92
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.42 E-value=2.1e-12 Score=110.42 Aligned_cols=153 Identities=15% Similarity=0.131 Sum_probs=121.6
Q ss_pred CCCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcc---cCCC-CCCCCcceeEeccCcccccccchhcccccC
Q 045261 3 LPESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVS---FPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRL 78 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~---~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l 78 (227)
.+++|+.|++++|...+.+|..+..+++|++|+++++. +.. +|.. ..+++|+.|++ ++ +.+.+.++...+..+
T Consensus 322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~L-s~-N~l~~~l~~~~~~~l 398 (520)
T 2z7x_B 322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDI-SQ-NSVSYDEKKGDCSWT 398 (520)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEEC-CS-SCCBCCGGGCSCCCC
T ss_pred hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEEC-CC-CcCCcccccchhccC
Confidence 46899999999986656688889999999999999975 553 3333 78899999999 77 555534655567889
Q ss_pred CccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCC
Q 045261 79 TSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPS 156 (227)
Q Consensus 79 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~ 156 (227)
++|++|++++|.-...+|..+ .++|+.|++++ +.+..+| .++..+++|++|+++++ .++.+|.. ...+
T Consensus 399 ~~L~~L~Ls~N~l~~~~~~~l-----~~~L~~L~Ls~-N~l~~ip---~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~ 468 (520)
T 2z7x_B 399 KSLLSLNMSSNILTDTIFRCL-----PPRIKVLDLHS-NKIKSIP---KQVVKLEALQELNVASN-QLKSVPDGIFDRLT 468 (520)
T ss_dssp TTCCEEECCSSCCCGGGGGSC-----CTTCCEEECCS-SCCCCCC---GGGGGCTTCCEEECCSS-CCCCCCTTTTTTCT
T ss_pred ccCCEEECcCCCCCcchhhhh-----cccCCEEECCC-Ccccccc---hhhhcCCCCCEEECCCC-cCCccCHHHhccCC
Confidence 999999999984445555433 37999999999 5778898 77779999999999994 78888875 3467
Q ss_pred ccceeeecCCCC
Q 045261 157 SLLDLCIFNCPN 168 (227)
Q Consensus 157 ~L~~l~i~~c~~ 168 (227)
+|+++++++++.
T Consensus 469 ~L~~L~l~~N~~ 480 (520)
T 2z7x_B 469 SLQKIWLHTNPW 480 (520)
T ss_dssp TCCEEECCSSCB
T ss_pred cccEEECcCCCC
Confidence 899999998763
No 93
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.40 E-value=1e-12 Score=111.82 Aligned_cols=174 Identities=11% Similarity=0.079 Sum_probs=123.7
Q ss_pred CCCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC------------------CCCCCcceeEeccCcc
Q 045261 3 LPESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE------------------GFPTNLTSLAIGEDMK 64 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~------------------~~l~~L~~L~l~~~~~ 64 (227)
-+++|+.|++++|. ++..+. +..+++|++|++++|. +..++.. ..+++|+.|++ ++ +
T Consensus 56 ~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L-~~-N 130 (487)
T 3oja_A 56 PFTKLELLNLSSNV-LYETLD-LESLSTLRTLDLNNNY-VQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYL-AN-N 130 (487)
T ss_dssp TCTTCCEEECTTSC-CEEEEE-CTTCTTCCEEECCSSE-EEEEEECTTCCEEECCSSCCCCEEECCCSSCEEEEC-CS-S
T ss_pred CCCCCCEEEeeCCC-CCCCcc-cccCCCCCEEEecCCc-CCCCCCCCCcCEEECcCCcCCCCCccccCCCCEEEC-CC-C
Confidence 35788899998865 443333 7788888888887763 3333211 24577888888 65 4
Q ss_pred cccccchhcccccCCccceEEeccCCCCCc-cCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCC
Q 045261 65 MLYKGLVQWGLHRLTSLRWLLIERCDESEC-FPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDC 143 (227)
Q Consensus 65 ~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~-l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c 143 (227)
.+. ...+..++.+++|++|+++++ .+.. .|..+. ..+++|+.|++++ +.+..++ . ...+++|++|++++
T Consensus 131 ~l~-~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~--~~l~~L~~L~Ls~-N~l~~~~---~-~~~l~~L~~L~Ls~- 200 (487)
T 3oja_A 131 KIT-MLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELA--ASSDTLEHLNLQY-NFIYDVK---G-QVVFAKLKTLDLSS- 200 (487)
T ss_dssp CCC-SGGGBCGGGGSSEEEEECTTS-CCCEEEGGGGG--GGTTTCCEEECTT-SCCCEEE---C-CCCCTTCCEEECCS-
T ss_pred CCC-CCCchhhcCCCCCCEEECCCC-CCCCcChHHHh--hhCCcccEEecCC-Ccccccc---c-cccCCCCCEEECCC-
Confidence 554 444556888999999999998 5544 444442 1478999999999 5677765 2 34689999999999
Q ss_pred CCCccCCCC-CCCCccceeeecCCCCCCCCCCC-CCCCCCcEEeecCCchh
Q 045261 144 PNLTSLPKV-GLPSSLLDLCIFNCPNLTSLPKV-GLPSSLLELTIFDCPKL 192 (227)
Q Consensus 144 ~~l~~~~~~-~~~~~L~~l~i~~c~~l~~~~~~-~~~~~L~~L~l~~c~~l 192 (227)
+.+..+|.. ...++|+.|+++++. +..+|.. ..+++|+.|++++++..
T Consensus 201 N~l~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 201 NKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFH 250 (487)
T ss_dssp SCCCEECGGGGGGTTCSEEECTTSC-CCEECTTCCCCTTCCEEECTTCCBC
T ss_pred CCCCCCCHhHcCCCCccEEEecCCc-CcccchhhccCCCCCEEEcCCCCCc
Confidence 567777654 456789999999965 5566653 55789999999997644
No 94
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.40 E-value=8.1e-12 Score=107.93 Aligned_cols=156 Identities=24% Similarity=0.360 Sum_probs=72.5
Q ss_pred CccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccc---------
Q 045261 6 SISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLH--------- 76 (227)
Q Consensus 6 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~--------- 76 (227)
+|+.|+++++ .++.+|..+ +++|++|+++++. +..+| ..+++|+.|++ ++ +.++ .++. +.
T Consensus 60 ~L~~L~Ls~n-~L~~lp~~l--~~~L~~L~Ls~N~-l~~ip--~~l~~L~~L~L-s~-N~l~-~ip~--l~~~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRL-NLSSLPDNL--PPQITVLEITQNA-LISLP--ELPASLEYLDA-CD-NRLS-TLPE--LPASLKHLDVD 128 (571)
T ss_dssp TCSEEECCSS-CCSCCCSCC--CTTCSEEECCSSC-CSCCC--CCCTTCCEEEC-CS-SCCS-CCCC--CCTTCCEEECC
T ss_pred CccEEEeCCC-CCCccCHhH--cCCCCEEECcCCC-Ccccc--cccCCCCEEEc-cC-CCCC-Ccch--hhcCCCEEECC
Confidence 4555555553 344455433 2455555555542 44444 34455555555 43 2332 1211 22
Q ss_pred ---------cCCccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCc
Q 045261 77 ---------RLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLT 147 (227)
Q Consensus 77 ---------~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~ 147 (227)
.+++|++|+++++ .++.+|. .+++|+.|++++ +.+..+| . +. ++|+.|++++ +.++
T Consensus 129 ~N~l~~lp~~l~~L~~L~Ls~N-~l~~lp~------~l~~L~~L~Ls~-N~L~~lp---~-l~--~~L~~L~Ls~-N~L~ 193 (571)
T 3cvr_A 129 NNQLTMLPELPALLEYINADNN-QLTMLPE------LPTSLEVLSVRN-NQLTFLP---E-LP--ESLEALDVST-NLLE 193 (571)
T ss_dssp SSCCSCCCCCCTTCCEEECCSS-CCSCCCC------CCTTCCEEECCS-SCCSCCC---C-CC--TTCCEEECCS-SCCS
T ss_pred CCcCCCCCCcCccccEEeCCCC-ccCcCCC------cCCCcCEEECCC-CCCCCcc---h-hh--CCCCEEECcC-CCCC
Confidence 3344455555444 3333443 234555555555 3444454 2 32 5566666655 3455
Q ss_pred cCCCCCCCCcc-------ceeeecCCCCCCCCCCC-CCCCCCcEEeecCCc
Q 045261 148 SLPKVGLPSSL-------LDLCIFNCPNLTSLPKV-GLPSSLLELTIFDCP 190 (227)
Q Consensus 148 ~~~~~~~~~~L-------~~l~i~~c~~l~~~~~~-~~~~~L~~L~l~~c~ 190 (227)
.+|. +..+| +.|+++++ .++.+|.. ..+++|+.|++++++
T Consensus 194 ~lp~--~~~~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 194 SLPA--VPVRNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDNP 241 (571)
T ss_dssp SCCC--CC--------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSSS
T ss_pred chhh--HHHhhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCCc
Confidence 5554 33355 56666653 34455542 225566666666654
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.40 E-value=1.3e-11 Score=106.59 Aligned_cols=131 Identities=30% Similarity=0.426 Sum_probs=91.4
Q ss_pred CcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCccCcCCCCCCccc
Q 045261 30 SLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLV 109 (227)
Q Consensus 30 ~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~ 109 (227)
+|+.|+++++. +..+|.. .+++|+.|++ ++ +.++ .++ ..+++|++|++++| .++.+|. +. .+|+
T Consensus 60 ~L~~L~Ls~n~-L~~lp~~-l~~~L~~L~L-s~-N~l~-~ip----~~l~~L~~L~Ls~N-~l~~ip~-l~-----~~L~ 123 (571)
T 3cvr_A 60 QFSELQLNRLN-LSSLPDN-LPPQITVLEI-TQ-NALI-SLP----ELPASLEYLDACDN-RLSTLPE-LP-----ASLK 123 (571)
T ss_dssp TCSEEECCSSC-CSCCCSC-CCTTCSEEEC-CS-SCCS-CCC----CCCTTCCEEECCSS-CCSCCCC-CC-----TTCC
T ss_pred CccEEEeCCCC-CCccCHh-HcCCCCEEEC-cC-CCCc-ccc----cccCCCCEEEccCC-CCCCcch-hh-----cCCC
Confidence 89999999974 7777764 4589999999 76 4565 443 45789999999997 6777887 43 2788
Q ss_pred eEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccceeeecCCCCCCCCCCCCCCCCCcEEeecCC
Q 045261 110 HLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCIFNCPNLTSLPKVGLPSSLLELTIFDC 189 (227)
Q Consensus 110 ~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~i~~c~~l~~~~~~~~~~~L~~L~l~~c 189 (227)
.|++++ +.+..+| . .+++|+.|++++ +.++.+|. .+++|++|+++++. ++.+|. +.++|+.|+++++
T Consensus 124 ~L~Ls~-N~l~~lp---~---~l~~L~~L~Ls~-N~l~~lp~--~l~~L~~L~Ls~N~-L~~lp~--l~~~L~~L~Ls~N 190 (571)
T 3cvr_A 124 HLDVDN-NQLTMLP---E---LPALLEYINADN-NQLTMLPE--LPTSLEVLSVRNNQ-LTFLPE--LPESLEALDVSTN 190 (571)
T ss_dssp EEECCS-SCCSCCC---C---CCTTCCEEECCS-SCCSCCCC--CCTTCCEEECCSSC-CSCCCC--CCTTCCEEECCSS
T ss_pred EEECCC-CcCCCCC---C---cCccccEEeCCC-CccCcCCC--cCCCcCEEECCCCC-CCCcch--hhCCCCEEECcCC
Confidence 888887 5666676 3 567777777777 45666665 45667777776654 444555 3366666666655
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.40 E-value=2.1e-11 Score=92.00 Aligned_cols=154 Identities=23% Similarity=0.318 Sum_probs=83.8
Q ss_pred CCCCccEEEeccCCCCCcCC-cccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCC
Q 045261 3 LPESISSVEIRRCEKLGALP-SDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLT 79 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~ 79 (227)
++++|++|+++++. ++.++ ..+..+++|++|+++++ .+..++.. ..+++|++|++ ++ +.+. .+++..+..++
T Consensus 26 ~~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L-s~-n~l~-~~~~~~~~~l~ 100 (208)
T 2o6s_A 26 IPAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGN-KLQSLPNGVFNKLTSLTYLNL-ST-NQLQ-SLPNGVFDKLT 100 (208)
T ss_dssp CCTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEEC-CS-SCCC-CCCTTTTTTCT
T ss_pred CCCCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCC-ccCccChhhcCCCCCcCEEEC-CC-CcCC-ccCHhHhcCcc
Confidence 34566667776643 44444 33466666777776664 34555443 45666777766 54 3343 33343456666
Q ss_pred ccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccc
Q 045261 80 SLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLL 159 (227)
Q Consensus 80 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~ 159 (227)
+|++|+++++ .+..++.... ..+++|++|++++ +.+..++ ...+..+++|++|++++++-. ...+.++
T Consensus 101 ~L~~L~L~~N-~l~~~~~~~~--~~l~~L~~L~l~~-N~l~~~~--~~~~~~l~~L~~L~l~~N~~~------~~~~~l~ 168 (208)
T 2o6s_A 101 QLKELALNTN-QLQSLPDGVF--DKLTQLKDLRLYQ-NQLKSVP--DGVFDRLTSLQYIWLHDNPWD------CTCPGIR 168 (208)
T ss_dssp TCCEEECCSS-CCCCCCTTTT--TTCTTCCEEECCS-SCCSCCC--TTTTTTCTTCCEEECCSCCBC------CCTTTTH
T ss_pred CCCEEEcCCC-cCcccCHhHh--ccCCcCCEEECCC-CccceeC--HHHhccCCCccEEEecCCCee------cCCCCHH
Confidence 6777776665 4555554321 1456667777666 3455555 234566666777766664321 1233455
Q ss_pred eeeecCCCCCCCCC
Q 045261 160 DLCIFNCPNLTSLP 173 (227)
Q Consensus 160 ~l~i~~c~~l~~~~ 173 (227)
+|+++.+..-+.+|
T Consensus 169 ~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 169 YLSEWINKHSGVVR 182 (208)
T ss_dssp HHHHHHHHCTTTBB
T ss_pred HHHHHHHhCCceee
Confidence 55555544444444
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.39 E-value=4e-12 Score=110.74 Aligned_cols=147 Identities=18% Similarity=0.197 Sum_probs=119.0
Q ss_pred CCCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccc
Q 045261 3 LPESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLR 82 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~ 82 (227)
.+++|+.|+|++|. +..++. +..+++|+.|++++|. +..++....+++|+.|++ +++ .+. .+ ..+..+++|+
T Consensus 63 ~l~~L~~L~Ls~N~-l~~~~~-l~~l~~L~~L~Ls~N~-l~~l~~l~~l~~L~~L~L-s~N-~l~-~l--~~l~~l~~L~ 134 (605)
T 1m9s_A 63 YLPNVTKLFLNGNK-LTDIKP-LTNLKNLGWLFLDENK-IKDLSSLKDLKKLKSLSL-EHN-GIS-DI--NGLVHLPQLE 134 (605)
T ss_dssp GCTTCCEEECTTSC-CCCCGG-GGGCTTCCEEECCSSC-CCCCTTSTTCTTCCEEEC-TTS-CCC-CC--GGGGGCTTCS
T ss_pred cCCCCCEEEeeCCC-CCCChh-hccCCCCCEEECcCCC-CCCChhhccCCCCCEEEe-cCC-CCC-CC--ccccCCCccC
Confidence 47899999999974 666665 8899999999999974 777776688999999999 774 454 22 2588999999
Q ss_pred eEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccceee
Q 045261 83 WLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLC 162 (227)
Q Consensus 83 ~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~ 162 (227)
.|++++| .+..++ .+. .+++|+.|++++ +.+..++ . +..+++|++|++++| .+..++....+++|+.|+
T Consensus 135 ~L~Ls~N-~l~~l~-~l~---~l~~L~~L~Ls~-N~l~~~~---~-l~~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~~L~ 203 (605)
T 1m9s_A 135 SLYLGNN-KITDIT-VLS---RLTKLDTLSLED-NQISDIV---P-LAGLTKLQNLYLSKN-HISDLRALAGLKNLDVLE 203 (605)
T ss_dssp EEECCSS-CCCCCG-GGG---SCTTCSEEECCS-SCCCCCG---G-GTTCTTCCEEECCSS-CCCBCGGGTTCTTCSEEE
T ss_pred EEECCCC-ccCCch-hhc---ccCCCCEEECcC-CcCCCch---h-hccCCCCCEEECcCC-CCCCChHHccCCCCCEEE
Confidence 9999997 677774 333 789999999998 4677775 3 889999999999995 677777656778999999
Q ss_pred ecCCCC
Q 045261 163 IFNCPN 168 (227)
Q Consensus 163 i~~c~~ 168 (227)
+++|+.
T Consensus 204 L~~N~l 209 (605)
T 1m9s_A 204 LFSQEC 209 (605)
T ss_dssp CCSEEE
T ss_pred ccCCcC
Confidence 998654
No 98
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.38 E-value=3e-11 Score=105.46 Aligned_cols=91 Identities=26% Similarity=0.367 Sum_probs=47.4
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccce
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRW 83 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~ 83 (227)
+++|+.|++++| .++.+|. .+++|++|+++++. +..+|. .+++|+.|++ ++ +.+. .++. .+++|+.
T Consensus 60 ~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~Ls~N~-l~~lp~--~l~~L~~L~L-s~-N~l~-~l~~----~l~~L~~ 125 (622)
T 3g06_A 60 PAHITTLVIPDN-NLTSLPA---LPPELRTLEVSGNQ-LTSLPV--LPPGLLELSI-FS-NPLT-HLPA----LPSGLCK 125 (622)
T ss_dssp CTTCSEEEECSC-CCSCCCC---CCTTCCEEEECSCC-CSCCCC--CCTTCCEEEE-CS-CCCC-CCCC----CCTTCCE
T ss_pred CCCCcEEEecCC-CCCCCCC---cCCCCCEEEcCCCc-CCcCCC--CCCCCCEEEC-cC-CcCC-CCCC----CCCCcCE
Confidence 456677777764 3555554 45666677776653 555554 5566666666 44 2332 1111 3344555
Q ss_pred EEeccCCCCCccCccCcCCCCCCccceEEEec
Q 045261 84 LLIERCDESECFPDGMMGMTLPTSLVHLNIVE 115 (227)
Q Consensus 84 L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~ 115 (227)
|++.++ .++.+|. .+++|++|++++
T Consensus 126 L~L~~N-~l~~lp~------~l~~L~~L~Ls~ 150 (622)
T 3g06_A 126 LWIFGN-QLTSLPV------LPPGLQELSVSD 150 (622)
T ss_dssp EECCSS-CCSCCCC------CCTTCCEEECCS
T ss_pred EECCCC-CCCcCCC------CCCCCCEEECcC
Confidence 555544 3444443 124455555554
No 99
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.38 E-value=7.2e-12 Score=108.29 Aligned_cols=153 Identities=15% Similarity=0.150 Sum_probs=121.5
Q ss_pred CCCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCC---C-CCCCCcceeEeccCcccccccchhcccccC
Q 045261 3 LPESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPE---E-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRL 78 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~---~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l 78 (227)
.+++|+.|++++|...+..|..++++++|++|+++++. +..++. . ..+++|+.|++ ++ +.+.+.++...+..+
T Consensus 351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l-~~-N~l~~~~~~~~~~~l 427 (562)
T 3a79_B 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDV-SL-NSLNSHAYDRTCAWA 427 (562)
T ss_dssp SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEEC-TT-SCCBSCCSSCCCCCC
T ss_pred CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEEC-CC-CcCCCccChhhhcCc
Confidence 46899999999986656678889999999999999974 665542 2 68899999999 77 455534556568889
Q ss_pred CccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCC
Q 045261 79 TSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPS 156 (227)
Q Consensus 79 ~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~ 156 (227)
++|++|+++++.-...++..+ .++|+.|++++ +.+..+| .++.++++|++|++++ +.+..+|.. ...+
T Consensus 428 ~~L~~L~l~~n~l~~~~~~~l-----~~~L~~L~L~~-N~l~~ip---~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~ 497 (562)
T 3a79_B 428 ESILVLNLSSNMLTGSVFRCL-----PPKVKVLDLHN-NRIMSIP---KDVTHLQALQELNVAS-NQLKSVPDGVFDRLT 497 (562)
T ss_dssp TTCCEEECCSSCCCGGGGSSC-----CTTCSEEECCS-SCCCCCC---TTTTSSCCCSEEECCS-SCCCCCCTTSTTTCT
T ss_pred ccCCEEECCCCCCCcchhhhh-----cCcCCEEECCC-CcCcccC---hhhcCCCCCCEEECCC-CCCCCCCHHHHhcCC
Confidence 999999999984434444432 27999999998 5888998 7777999999999999 578888874 4567
Q ss_pred ccceeeecCCCC
Q 045261 157 SLLDLCIFNCPN 168 (227)
Q Consensus 157 ~L~~l~i~~c~~ 168 (227)
+|+.+++++++.
T Consensus 498 ~L~~L~l~~N~~ 509 (562)
T 3a79_B 498 SLQYIWLHDNPW 509 (562)
T ss_dssp TCCCEECCSCCB
T ss_pred CCCEEEecCCCc
Confidence 899999998764
No 100
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.38 E-value=4.2e-12 Score=99.55 Aligned_cols=144 Identities=16% Similarity=0.164 Sum_probs=114.5
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccce
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRW 83 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~ 83 (227)
+++|+.|++++| .++.++ .+..+++|++|+++++. +..++....+++|+.|++ ++ +.+. .++. +.. ++|++
T Consensus 40 l~~L~~L~l~~n-~i~~l~-~l~~l~~L~~L~L~~N~-i~~~~~l~~l~~L~~L~L-~~-N~l~-~l~~--~~~-~~L~~ 110 (263)
T 1xeu_A 40 LSGVQNFNGDNS-NIQSLA-GMQFFTNLKELHLSHNQ-ISDLSPLKDLTKLEELSV-NR-NRLK-NLNG--IPS-ACLSR 110 (263)
T ss_dssp HTTCSEEECTTS-CCCCCT-TGGGCTTCCEEECCSSC-CCCCGGGTTCSSCCEEEC-CS-SCCS-CCTT--CCC-SSCCE
T ss_pred cCcCcEEECcCC-Ccccch-HHhhCCCCCEEECCCCc-cCCChhhccCCCCCEEEC-CC-CccC-CcCc--ccc-CcccE
Confidence 478999999996 577787 68899999999999874 666665678899999999 76 4554 3322 333 89999
Q ss_pred EEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCCCCccceeee
Q 045261 84 LLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCI 163 (227)
Q Consensus 84 L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~i 163 (227)
|+++++ .++.++. +. .+++|+.|++++ +.+..++ .+..+++|++|++++ +.+..++....+++|+.|++
T Consensus 111 L~L~~N-~l~~~~~-l~---~l~~L~~L~Ls~-N~i~~~~----~l~~l~~L~~L~L~~-N~i~~~~~l~~l~~L~~L~l 179 (263)
T 1xeu_A 111 LFLDNN-ELRDTDS-LI---HLKNLEILSIRN-NKLKSIV----MLGFLSKLEVLDLHG-NEITNTGGLTRLKKVNWIDL 179 (263)
T ss_dssp EECCSS-CCSBSGG-GT---TCTTCCEEECTT-SCCCBCG----GGGGCTTCCEEECTT-SCCCBCTTSTTCCCCCEEEE
T ss_pred EEccCC-ccCCChh-hc---CcccccEEECCC-CcCCCCh----HHccCCCCCEEECCC-CcCcchHHhccCCCCCEEeC
Confidence 999997 7777764 33 789999999998 5677775 578899999999999 56777755566789999999
Q ss_pred cCCC
Q 045261 164 FNCP 167 (227)
Q Consensus 164 ~~c~ 167 (227)
++++
T Consensus 180 ~~N~ 183 (263)
T 1xeu_A 180 TGQK 183 (263)
T ss_dssp EEEE
T ss_pred CCCc
Confidence 9865
No 101
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.38 E-value=1.2e-11 Score=94.46 Aligned_cols=130 Identities=19% Similarity=0.354 Sum_probs=104.3
Q ss_pred CCCCccEEEeccCCCCCcCC-cccCCCCCcceEeecCCCCCcccC-CC-CCCCCcceeEeccCcccccccchhcccccCC
Q 045261 3 LPESISSVEIRRCEKLGALP-SDMHKLNSLQDLDIRECPSIVSFP-EE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLT 79 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~~~-~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~ 79 (227)
+.++|+.|+++++ .++.++ ..+.++++|++|+++++. +..+. .. ..+++|+.|++ ++ +.++ .+++..+..++
T Consensus 30 l~~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~L-s~-N~l~-~l~~~~f~~l~ 104 (220)
T 2v9t_B 30 LPETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQ-ISELAPDAFQGLRSLNSLVL-YG-NKIT-ELPKSLFEGLF 104 (220)
T ss_dssp CCTTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSC-CCEECTTTTTTCSSCCEEEC-CS-SCCC-CCCTTTTTTCT
T ss_pred cCcCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCc-CCCcCHHHhhCCcCCCEEEC-CC-CcCC-ccCHhHccCCC
Confidence 4578999999996 466665 478999999999999975 66664 33 78899999999 66 5665 56666678999
Q ss_pred ccceEEeccCCCCCccCc-cCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCC
Q 045261 80 SLRWLLIERCDESECFPD-GMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCP 144 (227)
Q Consensus 80 ~L~~L~l~~~~~l~~l~~-~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~ 144 (227)
+|++|+++++ .+..++. .+. .+++|+.|++++ +.+..++ ...+..+++|++|++++++
T Consensus 105 ~L~~L~L~~N-~l~~~~~~~~~---~l~~L~~L~L~~-N~l~~~~--~~~~~~l~~L~~L~L~~N~ 163 (220)
T 2v9t_B 105 SLQLLLLNAN-KINCLRVDAFQ---DLHNLNLLSLYD-NKLQTIA--KGTFSPLRAIQTMHLAQNP 163 (220)
T ss_dssp TCCEEECCSS-CCCCCCTTTTT---TCTTCCEEECCS-SCCSCCC--TTTTTTCTTCCEEECCSSC
T ss_pred CCCEEECCCC-CCCEeCHHHcC---CCCCCCEEECCC-CcCCEEC--HHHHhCCCCCCEEEeCCCC
Confidence 9999999997 6666644 443 689999999998 6777777 4668899999999999854
No 102
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.37 E-value=4.4e-12 Score=103.87 Aligned_cols=168 Identities=16% Similarity=0.216 Sum_probs=120.5
Q ss_pred cEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC--C-CCCCcceeEeccCcccccccchhcccccCCccceE
Q 045261 8 SSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE--G-FPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWL 84 (227)
Q Consensus 8 ~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~--~-~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L 84 (227)
+.+++++ ..++.+|..+. +.++.|+++++ .+..++.. . .+++|+.|++ ++ +.+. .+.+..+..+++|++|
T Consensus 21 ~~l~c~~-~~l~~iP~~~~--~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L-~~-N~i~-~i~~~~~~~l~~L~~L 93 (361)
T 2xot_A 21 NILSCSK-QQLPNVPQSLP--SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLL-SH-NHLN-FISSEAFVPVPNLRYL 93 (361)
T ss_dssp TEEECCS-SCCSSCCSSCC--TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEEC-CS-SCCC-EECTTTTTTCTTCCEE
T ss_pred CEEEeCC-CCcCccCccCC--CCCCEEECCCC-CCCccChhhhhhcccccCEEEC-CC-CcCC-ccChhhccCCCCCCEE
Confidence 4677777 46777886543 45889999886 47777665 3 7899999999 66 4555 4555568889999999
Q ss_pred EeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCC-----CCCccc
Q 045261 85 LIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVG-----LPSSLL 159 (227)
Q Consensus 85 ~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~-----~~~~L~ 159 (227)
+++++ .+..++.... ..+++|+.|++++ +.+..++ ...+..+++|++|++++ +.+..+|... .+++|+
T Consensus 94 ~Ls~N-~l~~~~~~~~--~~l~~L~~L~L~~-N~i~~~~--~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~ 166 (361)
T 2xot_A 94 DLSSN-HLHTLDEFLF--SDLQALEVLLLYN-NHIVVVD--RNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLM 166 (361)
T ss_dssp ECCSS-CCCEECTTTT--TTCTTCCEEECCS-SCCCEEC--TTTTTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCC
T ss_pred ECCCC-cCCcCCHHHh--CCCcCCCEEECCC-CcccEEC--HHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCC
Confidence 99987 6777766432 2678999999998 5666664 37788999999999998 5788887653 367899
Q ss_pred eeeecCCCCCCCCCCCC--CCCC--CcEEeecCCc
Q 045261 160 DLCIFNCPNLTSLPKVG--LPSS--LLELTIFDCP 190 (227)
Q Consensus 160 ~l~i~~c~~l~~~~~~~--~~~~--L~~L~l~~c~ 190 (227)
+|+++++ .++.++... .++. ++.|++.+++
T Consensus 167 ~L~L~~N-~l~~l~~~~~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 167 LLDLSSN-KLKKLPLTDLQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp EEECCSS-CCCCCCHHHHHHSCHHHHTTEECCSSC
T ss_pred EEECCCC-CCCccCHHHhhhccHhhcceEEecCCC
Confidence 9999985 455665321 1333 4778888743
No 103
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.36 E-value=1.4e-12 Score=93.29 Aligned_cols=129 Identities=16% Similarity=0.189 Sum_probs=93.5
Q ss_pred CCCCccEEEeccCCCC-CcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCcc
Q 045261 3 LPESISSVEIRRCEKL-GALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSL 81 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l-~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L 81 (227)
.+++|+.|++++|... +.+|..+..+++|++|++++|. +..++....+++|+.|++ ++ +.+.+. .+..+..+++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~l~~L~~L~L-s~-n~i~~~-~~~~~~~l~~L 90 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVG-LTSIANLPKLNKLKKLEL-SD-NRVSGG-LEVLAEKCPNL 90 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSC-CCCCTTCCCCTTCCEEEC-CS-SCCCSC-THHHHHHCTTC
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCC-CCCchhhhcCCCCCEEEC-CC-Ccccch-HHHHhhhCCCC
Confidence 3578999999997543 3788888889999999998874 666643477889999999 66 445422 34456678889
Q ss_pred ceEEeccCCCCCccC--ccCcCCCCCCccceEEEecCCCccccCCCC---CCccCCCCccEEeecC
Q 045261 82 RWLLIERCDESECFP--DGMMGMTLPTSLVHLNIVEFQKLKNLSSSS---SGFHSLTSLRRLLIQD 142 (227)
Q Consensus 82 ~~L~l~~~~~l~~l~--~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~---~~l~~l~~L~~L~l~~ 142 (227)
++|+++++ .++.++ ..+. .+++|++|++++ +.+..++ . ..+..+++|++|++++
T Consensus 91 ~~L~ls~N-~i~~~~~~~~~~---~l~~L~~L~l~~-N~l~~~~--~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 91 THLNLSGN-KIKDLSTIEPLK---KLENLKSLDLFN-CEVTNLN--DYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CEEECTTS-CCCSHHHHGGGG---GCTTCCEEECTT-CGGGGST--THHHHHHHHCTTCCEETTBC
T ss_pred CEEECCCC-cCCChHHHHHHh---hCCCCCEEeCcC-CcccchH--HHHHHHHHHCCCcccccCCC
Confidence 99999887 566654 4443 678888998888 4677776 2 2567788888887653
No 104
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.34 E-value=7.3e-12 Score=102.55 Aligned_cols=153 Identities=18% Similarity=0.196 Sum_probs=114.6
Q ss_pred CCCCCccEEEeccCCCCCcCC-cccC-CCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhccccc
Q 045261 2 RLPESISSVEIRRCEKLGALP-SDMH-KLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHR 77 (227)
Q Consensus 2 ~~~~~L~~L~l~~~~~l~~lp-~~~~-~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~ 77 (227)
.+.+.++.|+++++ .++.++ ..+. ++++|++|+++++ .+..++.. ..+++|+.|++ ++ +.+. .+.+..+..
T Consensus 36 ~~~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~~l~~L~~L~L-s~-N~l~-~~~~~~~~~ 110 (361)
T 2xot_A 36 SLPSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAFVPVPNLRYLDL-SS-NHLH-TLDEFLFSD 110 (361)
T ss_dssp SCCTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEEC-CS-SCCC-EECTTTTTT
T ss_pred cCCCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccChhhccCCCCCCEEEC-CC-CcCC-cCCHHHhCC
Confidence 35678999999996 566665 4455 8999999999996 47777754 78899999999 76 5565 555667899
Q ss_pred CCccceEEeccCCCCCccC-ccCcCCCCCCccceEEEecCCCccccCCCCCCc---cCCCCccEEeecCCCCCccCCCC-
Q 045261 78 LTSLRWLLIERCDESECFP-DGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGF---HSLTSLRRLLIQDCPNLTSLPKV- 152 (227)
Q Consensus 78 l~~L~~L~l~~~~~l~~l~-~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l---~~l~~L~~L~l~~c~~l~~~~~~- 152 (227)
+++|++|+++++ .+..++ ..+. .+++|+.|++++ +.+..+| ...+ ..+++|++|++++ +.+..++..
T Consensus 111 l~~L~~L~L~~N-~i~~~~~~~~~---~l~~L~~L~L~~-N~l~~l~--~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~ 182 (361)
T 2xot_A 111 LQALEVLLLYNN-HIVVVDRNAFE---DMAQLQKLYLSQ-NQISRFP--VELIKDGNKLPKLMLLDLSS-NKLKKLPLTD 182 (361)
T ss_dssp CTTCCEEECCSS-CCCEECTTTTT---TCTTCCEEECCS-SCCCSCC--GGGTC----CTTCCEEECCS-SCCCCCCHHH
T ss_pred CcCCCEEECCCC-cccEECHHHhC---CcccCCEEECCC-CcCCeeC--HHHhcCcccCCcCCEEECCC-CCCCccCHHH
Confidence 999999999997 666664 4443 689999999998 6888887 2333 5789999999999 678887743
Q ss_pred -CCCCc--cceeeecCCC
Q 045261 153 -GLPSS--LLDLCIFNCP 167 (227)
Q Consensus 153 -~~~~~--L~~l~i~~c~ 167 (227)
...+. ++.|++.+++
T Consensus 183 ~~~l~~~~l~~l~l~~N~ 200 (361)
T 2xot_A 183 LQKLPAWVKNGLYLHNNP 200 (361)
T ss_dssp HHHSCHHHHTTEECCSSC
T ss_pred hhhccHhhcceEEecCCC
Confidence 12233 3667777643
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.32 E-value=2.5e-11 Score=92.63 Aligned_cols=147 Identities=16% Similarity=0.228 Sum_probs=104.9
Q ss_pred cEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCC-C--CCCCCcceeEeccCcccccccchhcccccCCccceE
Q 045261 8 SSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPE-E--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWL 84 (227)
Q Consensus 8 ~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~-~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L 84 (227)
+.+++++ ..++.+|..+. +.+++|+++++. +..++. . ..+++|+.|++ ++ +.++ .+.+..+..+++|++|
T Consensus 14 ~~l~~s~-n~l~~iP~~~~--~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L-~~-N~i~-~i~~~~~~~l~~L~~L 86 (220)
T 2v70_A 14 TTVDCSN-QKLNKIPEHIP--QYTAELRLNNNE-FTVLEATGIFKKLPQLRKINF-SN-NKIT-DIEEGAFEGASGVNEI 86 (220)
T ss_dssp TEEECCS-SCCSSCCSCCC--TTCSEEECCSSC-CCEECCCCCGGGCTTCCEEEC-CS-SCCC-EECTTTTTTCTTCCEE
T ss_pred CEeEeCC-CCcccCccCCC--CCCCEEEcCCCc-CCccCchhhhccCCCCCEEEC-CC-CcCC-EECHHHhCCCCCCCEE
Confidence 5678887 45777886553 456889998864 666633 2 57889999999 66 4555 4455568888999999
Q ss_pred EeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCCccceee
Q 045261 85 LIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPSSLLDLC 162 (227)
Q Consensus 85 ~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~l~ 162 (227)
+++++ .+..++.... ..+++|++|++++ +.+..++ ...+..+++|++|++++ +.+..++.. ...++|+.|+
T Consensus 87 ~Ls~N-~l~~~~~~~~--~~l~~L~~L~Ls~-N~l~~~~--~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 87 LLTSN-RLENVQHKMF--KGLESLKTLMLRS-NRITCVG--NDSFIGLSSVRLLSLYD-NQITTVAPGAFDTLHSLSTLN 159 (220)
T ss_dssp ECCSS-CCCCCCGGGG--TTCSSCCEEECTT-SCCCCBC--TTSSTTCTTCSEEECTT-SCCCCBCTTTTTTCTTCCEEE
T ss_pred ECCCC-ccCccCHhHh--cCCcCCCEEECCC-CcCCeEC--HhHcCCCccCCEEECCC-CcCCEECHHHhcCCCCCCEEE
Confidence 99987 6666665422 2678899999988 5666663 37788889999999988 567766432 3467888888
Q ss_pred ecCCCC
Q 045261 163 IFNCPN 168 (227)
Q Consensus 163 i~~c~~ 168 (227)
+++++.
T Consensus 160 L~~N~l 165 (220)
T 2v70_A 160 LLANPF 165 (220)
T ss_dssp CCSCCE
T ss_pred ecCcCC
Confidence 887653
No 106
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.32 E-value=5.6e-11 Score=90.63 Aligned_cols=146 Identities=16% Similarity=0.229 Sum_probs=98.7
Q ss_pred ceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCc-cCcCCCCCCccce
Q 045261 32 QDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPD-GMMGMTLPTSLVH 110 (227)
Q Consensus 32 ~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~~~~L~~ 110 (227)
+.+++++. .+..+|.. ....++.|++ ++ +.+........+..+++|++|+++++ .++.++. .+. .+++|++
T Consensus 14 ~~l~~s~n-~l~~iP~~-~~~~~~~L~L-~~-N~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~~---~l~~L~~ 85 (220)
T 2v70_A 14 TTVDCSNQ-KLNKIPEH-IPQYTAELRL-NN-NEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFE---GASGVNE 85 (220)
T ss_dssp TEEECCSS-CCSSCCSC-CCTTCSEEEC-CS-SCCCEECCCCCGGGCTTCCEEECCSS-CCCEECTTTTT---TCTTCCE
T ss_pred CEeEeCCC-CcccCccC-CCCCCCEEEc-CC-CcCCccCchhhhccCCCCCEEECCCC-cCCEECHHHhC---CCCCCCE
Confidence 56777764 46667653 4567788888 65 45542223334678888888888886 5666665 333 6788888
Q ss_pred EEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCCccceeeecCCCCCCCCCC--CCCCCCCcEEee
Q 045261 111 LNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPSSLLDLCIFNCPNLTSLPK--VGLPSSLLELTI 186 (227)
Q Consensus 111 L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~l~i~~c~~l~~~~~--~~~~~~L~~L~l 186 (227)
|++++ +.+..++ ...+..+++|++|++++ +.+..++.. ...++|++|+++++. ++.++. ...+++|++|++
T Consensus 86 L~Ls~-N~l~~~~--~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L 160 (220)
T 2v70_A 86 ILLTS-NRLENVQ--HKMFKGLESLKTLMLRS-NRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAFDTLHSLSTLNL 160 (220)
T ss_dssp EECCS-SCCCCCC--GGGGTTCSSCCEEECTT-SCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTTTTCTTCCEEEC
T ss_pred EECCC-CccCccC--HhHhcCCcCCCEEECCC-CcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHhcCCCCCCEEEe
Confidence 88888 5666665 35577888888888888 456666433 345788888888754 444433 234678888888
Q ss_pred cCCc
Q 045261 187 FDCP 190 (227)
Q Consensus 187 ~~c~ 190 (227)
++++
T Consensus 161 ~~N~ 164 (220)
T 2v70_A 161 LANP 164 (220)
T ss_dssp CSCC
T ss_pred cCcC
Confidence 8754
No 107
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.27 E-value=6.1e-11 Score=103.23 Aligned_cols=154 Identities=25% Similarity=0.181 Sum_probs=100.5
Q ss_pred cCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCc-cCccCcC
Q 045261 25 MHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESEC-FPDGMMG 101 (227)
Q Consensus 25 ~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~-l~~~~~~ 101 (227)
+..+++|+.+++.++......+.. ..+.+++.+++ +. +.+. ...+..+..+++|+.|+++++..... .|..+.
T Consensus 416 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~l-s~-n~l~-~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~- 491 (635)
T 4g8a_A 416 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI-SH-THTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT- 491 (635)
T ss_dssp CTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEEC-TT-SCCE-ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCT-
T ss_pred ccccccccchhhhhccccccccccccccccccccccc-cc-cccc-cccccccccchhhhhhhhhhcccccccCchhhh-
Confidence 344555555555544322222211 45566666666 44 3333 33344567778888888888754443 344443
Q ss_pred CCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCCccceeeecCCCCCCCCCCC---C
Q 045261 102 MTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPSSLLDLCIFNCPNLTSLPKV---G 176 (227)
Q Consensus 102 ~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~l~i~~c~~l~~~~~~---~ 176 (227)
.+++|++|++++| .+..++ ...+.++++|++|++++ +++..++.. ..+++|++|+++++. +..++.. .
T Consensus 492 --~l~~L~~L~Ls~N-~L~~l~--~~~f~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~ 564 (635)
T 4g8a_A 492 --ELRNLTFLDLSQC-QLEQLS--PTAFNSLSSLQVLNMSH-NNFFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQELQH 564 (635)
T ss_dssp --TCTTCCEEECTTS-CCCEEC--TTTTTTCTTCCEEECTT-SCCCBCCCGGGTTCTTCCEEECTTSC-CCBCCSSCTTC
T ss_pred --hccccCEEECCCC-ccCCcC--hHHHcCCCCCCEEECCC-CcCCCCChhHHhCCCCCCEEECCCCc-CCCCCHHHHHh
Confidence 6789999999985 666664 37889999999999999 578887764 346799999999865 4444432 2
Q ss_pred CCCCCcEEeecCC
Q 045261 177 LPSSLLELTIFDC 189 (227)
Q Consensus 177 ~~~~L~~L~l~~c 189 (227)
+.++|++|+++++
T Consensus 565 l~~~L~~L~L~~N 577 (635)
T 4g8a_A 565 FPSSLAFLNLTQN 577 (635)
T ss_dssp CCTTCCEEECTTC
T ss_pred hhCcCCEEEeeCC
Confidence 3478999999864
No 108
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.25 E-value=9.7e-11 Score=101.95 Aligned_cols=153 Identities=19% Similarity=0.168 Sum_probs=117.1
Q ss_pred CCCccEEEeccCCCCCcCC-cccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCc
Q 045261 4 PESISSVEIRRCEKLGALP-SDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTS 80 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~ 80 (227)
+++|+.++++++......+ ..+..+++++.++++.+. +...+.. ..+++++.|++ +++.... ...+..+..+++
T Consensus 419 l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~-l~~~~~~~~~~~~~L~~L~L-s~N~~~~-~~~~~~~~~l~~ 495 (635)
T 4g8a_A 419 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKM-AGNSFQE-NFLPDIFTELRN 495 (635)
T ss_dssp CTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSC-CEECCTTTTTTCTTCCEEEC-TTCEEGG-GEECSCCTTCTT
T ss_pred cccccchhhhhccccccccccccccccccccccccccc-cccccccccccchhhhhhhh-hhccccc-ccCchhhhhccc
Confidence 5677777777765544443 456789999999999865 4444433 77899999999 8765554 445667899999
Q ss_pred cceEEeccCCCCCccC-ccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCC---CCC
Q 045261 81 LRWLLIERCDESECFP-DGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVG---LPS 156 (227)
Q Consensus 81 L~~L~l~~~~~l~~l~-~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~---~~~ 156 (227)
|++|++++| .++.++ ..+. .+++|++|++++ +.+..++ ...+.++++|+.|++++ +.+..++... ..+
T Consensus 496 L~~L~Ls~N-~L~~l~~~~f~---~l~~L~~L~Ls~-N~l~~l~--~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~l~~ 567 (635)
T 4g8a_A 496 LTFLDLSQC-QLEQLSPTAFN---SLSSLQVLNMSH-NNFFSLD--TFPYKCLNSLQVLDYSL-NHIMTSKKQELQHFPS 567 (635)
T ss_dssp CCEEECTTS-CCCEECTTTTT---TCTTCCEEECTT-SCCCBCC--CGGGTTCTTCCEEECTT-SCCCBCCSSCTTCCCT
T ss_pred cCEEECCCC-ccCCcChHHHc---CCCCCCEEECCC-CcCCCCC--hhHHhCCCCCCEEECCC-CcCCCCCHHHHHhhhC
Confidence 999999998 676664 4454 789999999998 5777776 46788999999999999 5677776543 246
Q ss_pred ccceeeecCCC
Q 045261 157 SLLDLCIFNCP 167 (227)
Q Consensus 157 ~L~~l~i~~c~ 167 (227)
+|+.|++++++
T Consensus 568 ~L~~L~L~~Np 578 (635)
T 4g8a_A 568 SLAFLNLTQND 578 (635)
T ss_dssp TCCEEECTTCC
T ss_pred cCCEEEeeCCC
Confidence 89999999865
No 109
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.25 E-value=1.5e-11 Score=90.47 Aligned_cols=126 Identities=15% Similarity=0.139 Sum_probs=58.4
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccce
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRW 83 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~ 83 (227)
+++|+.|++++| .++.++......++|++|+++++. +..++....+++|+.|++ ++ +.+. .+++..+..+++|++
T Consensus 18 ~~~L~~L~l~~n-~l~~i~~~~~~~~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~L-s~-N~l~-~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 18 AVRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDNE-IRKLDGFPLLRRLKTLLV-NN-NRIC-RIGEGLDQALPDLTE 92 (176)
T ss_dssp TTSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSSC-CCEECCCCCCSSCCEEEC-CS-SCCC-EECSCHHHHCTTCCE
T ss_pred cCCceEEEeeCC-CCchhHHhhhcCCCCCEEECCCCC-CCcccccccCCCCCEEEC-CC-Cccc-ccCcchhhcCCCCCE
Confidence 345555555554 344444322222355555555542 444432244555555555 44 2332 222222345555555
Q ss_pred EEeccCCCCCccCc--cCcCCCCCCccceEEEecCCCccccCCCCCC----ccCCCCccEEeecC
Q 045261 84 LLIERCDESECFPD--GMMGMTLPTSLVHLNIVEFQKLKNLSSSSSG----FHSLTSLRRLLIQD 142 (227)
Q Consensus 84 L~l~~~~~l~~l~~--~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~----l~~l~~L~~L~l~~ 142 (227)
|+++++ .+..+|. .+. .+++|+.|++++ +.+..+| .. +..+++|+.|++++
T Consensus 93 L~L~~N-~i~~~~~~~~l~---~l~~L~~L~l~~-N~i~~~~---~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 93 LILTNN-SLVELGDLDPLA---SLKSLTYLCILR-NPVTNKK---HYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp EECCSC-CCCCGGGGGGGG---GCTTCCEEECCS-SGGGGST---THHHHHHHHCTTCSEETTEE
T ss_pred EECCCC-cCCcchhhHhhh---cCCCCCEEEecC-CCCCCcH---hHHHHHHHHCCccceeCCCc
Confidence 555554 4444443 222 345555555555 3344444 32 44555555555554
No 110
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.15 E-value=9e-10 Score=80.85 Aligned_cols=85 Identities=28% Similarity=0.425 Sum_probs=36.0
Q ss_pred cccCCccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--
Q 045261 75 LHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV-- 152 (227)
Q Consensus 75 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~-- 152 (227)
+..+++|++|+++++ .++.++.... ..+++|++|++++ +.+..++ ...+..+++|++|++++ +.+..++..
T Consensus 48 ~~~l~~L~~L~l~~n-~l~~~~~~~~--~~l~~L~~L~l~~-N~l~~~~--~~~~~~l~~L~~L~l~~-N~l~~~~~~~~ 120 (177)
T 2o6r_A 48 FDKLTQLTKLSLSQN-QIQSLPDGVF--DKLTKLTILYLHE-NKLQSLP--NGVFDKLTQLKELALDT-NQLKSVPDGIF 120 (177)
T ss_dssp TTTCTTCSEEECCSS-CCCCCCTTTT--TTCTTCCEEECCS-SCCCCCC--TTTTTTCTTCCEEECCS-SCCSCCCTTTT
T ss_pred hcCcccccEEECCCC-cceEeChhHc--cCCCccCEEECCC-CCccccC--HHHhhCCcccCEEECcC-CcceEeCHHHh
Confidence 344444555555443 3333433221 1344455555544 3343433 22334445555555544 234444432
Q ss_pred CCCCccceeeecCC
Q 045261 153 GLPSSLLDLCIFNC 166 (227)
Q Consensus 153 ~~~~~L~~l~i~~c 166 (227)
...++|++|+++++
T Consensus 121 ~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 121 DRLTSLQKIWLHTN 134 (177)
T ss_dssp TTCTTCCEEECCSS
T ss_pred cCCcccCEEEecCC
Confidence 12344455555443
No 111
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.15 E-value=5.3e-10 Score=83.46 Aligned_cols=84 Identities=20% Similarity=0.263 Sum_probs=34.8
Q ss_pred cccCCccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--
Q 045261 75 LHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV-- 152 (227)
Q Consensus 75 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~-- 152 (227)
+..+++|++|+++++ .++.++.... ..+++|++|++++ +.+..++ ...+..+++|++|++++ +.+..++..
T Consensus 50 ~~~l~~L~~L~Ls~N-~i~~i~~~~f--~~l~~L~~L~Ls~-N~l~~i~--~~~f~~l~~L~~L~L~~-N~l~~~~~~~~ 122 (193)
T 2wfh_A 50 LSNYKHLTLIDLSNN-RISTLSNQSF--SNMTQLLTLILSY-NRLRCIP--PRTFDGLKSLRLLSLHG-NDISVVPEGAF 122 (193)
T ss_dssp GGGCTTCCEEECCSS-CCCCCCTTTT--TTCTTCCEEECCS-SCCCBCC--TTTTTTCTTCCEEECCS-SCCCBCCTTTT
T ss_pred hhcccCCCEEECCCC-cCCEeCHhHc--cCCCCCCEEECCC-CccCEeC--HHHhCCCCCCCEEECCC-CCCCeeChhhh
Confidence 444444444444443 3333332211 1344444444444 3333333 23344444455555444 334444432
Q ss_pred CCCCccceeeecC
Q 045261 153 GLPSSLLDLCIFN 165 (227)
Q Consensus 153 ~~~~~L~~l~i~~ 165 (227)
..+++|+.|++++
T Consensus 123 ~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 123 NDLSALSHLAIGA 135 (193)
T ss_dssp TTCTTCCEEECCS
T ss_pred hcCccccEEEeCC
Confidence 1233444444444
No 112
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.13 E-value=8.6e-10 Score=82.20 Aligned_cols=123 Identities=16% Similarity=0.276 Sum_probs=78.6
Q ss_pred cEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC---CCCCCcceeEeccCcccccccchhcccccCCccceE
Q 045261 8 SSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE---GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWL 84 (227)
Q Consensus 8 ~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~---~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L 84 (227)
+.+++++ ..++++|..+.. +|++|+++++ .+..++.. ..+++|++|++ ++ +.++ .+.+..+..+++|++|
T Consensus 11 ~~l~~s~-~~l~~ip~~~~~--~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~L-s~-N~l~-~~~~~~~~~l~~L~~L 83 (192)
T 1w8a_A 11 TTVDCTG-RGLKEIPRDIPL--HTTELLLNDN-ELGRISSDGLFGRLPHLVKLEL-KR-NQLT-GIEPNAFEGASHIQEL 83 (192)
T ss_dssp TEEECTT-SCCSSCCSCCCT--TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEEC-CS-SCCC-CBCTTTTTTCTTCCEE
T ss_pred CEEEcCC-CCcCcCccCCCC--CCCEEECCCC-cCCccCCccccccCCCCCEEEC-CC-CCCC-CcCHhHcCCcccCCEE
Confidence 5677777 356777765433 7778888775 35555542 56777778877 55 4554 3445567777777888
Q ss_pred EeccCCCCCccCcc-CcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCC
Q 045261 85 LIERCDESECFPDG-MMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCP 144 (227)
Q Consensus 85 ~l~~~~~l~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~ 144 (227)
+++++ .++.++.. +. .+++|++|++++ +.+..++ ...+..+++|++|++++++
T Consensus 84 ~Ls~N-~l~~~~~~~~~---~l~~L~~L~L~~-N~l~~~~--~~~~~~l~~L~~L~L~~N~ 137 (192)
T 1w8a_A 84 QLGEN-KIKEISNKMFL---GLHQLKTLNLYD-NQISCVM--PGSFEHLNSLTSLNLASNP 137 (192)
T ss_dssp ECCSC-CCCEECSSSST---TCTTCCEEECCS-SCCCEEC--TTSSTTCTTCCEEECTTCC
T ss_pred ECCCC-cCCccCHHHhc---CCCCCCEEECCC-CcCCeeC--HHHhhcCCCCCEEEeCCCC
Confidence 77776 55555543 32 567777777777 4454442 2667777777777777743
No 113
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.13 E-value=1.7e-13 Score=118.65 Aligned_cols=174 Identities=17% Similarity=0.176 Sum_probs=123.9
Q ss_pred CCCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCC-------------CCcccCCC-CCCCCcceeEeccCcccccc
Q 045261 3 LPESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECP-------------SIVSFPEE-GFPTNLTSLAIGEDMKMLYK 68 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~-------------~l~~~~~~-~~l~~L~~L~l~~~~~~l~~ 68 (227)
..++|+.|+++++ .++.+|..++++++|+.|+++++. .....|.. +.+++|+.|+. ..++.+.
T Consensus 347 ~~~~L~~L~Ls~n-~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~-l~~n~~~- 423 (567)
T 1dce_A 347 TDEQLFRCELSVE-KSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP-MRAAYLD- 423 (567)
T ss_dssp TTTTSSSCCCCHH-HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCG-GGHHHHH-
T ss_pred cCccceeccCChh-hHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcc-hhhcccc-
Confidence 3567888888884 567888889999999998886542 12222222 45667777762 2333222
Q ss_pred cchh-----ccccc--CCccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeec
Q 045261 69 GLVQ-----WGLHR--LTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQ 141 (227)
Q Consensus 69 ~~~~-----~~~~~--l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~ 141 (227)
.+.. ..+.. ...|+.|+++++ .++.+|. +. .+++|+.|++++ +.+..+| ..++++++|++|+++
T Consensus 424 ~L~~l~l~~n~i~~l~~~~L~~L~Ls~n-~l~~lp~-~~---~l~~L~~L~Ls~-N~l~~lp---~~~~~l~~L~~L~Ls 494 (567)
T 1dce_A 424 DLRSKFLLENSVLKMEYADVRVLHLAHK-DLTVLCH-LE---QLLLVTHLDLSH-NRLRALP---PALAALRCLEVLQAS 494 (567)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEEECTTS-CCSSCCC-GG---GGTTCCEEECCS-SCCCCCC---GGGGGCTTCCEEECC
T ss_pred hhhhhhhhcccccccCccCceEEEecCC-CCCCCcC-cc---ccccCcEeecCc-ccccccc---hhhhcCCCCCEEECC
Confidence 1100 00111 235899999997 7888886 54 789999999998 6777998 789999999999999
Q ss_pred CCCCCccCCCCCCCCccceeeecCCCCCCCC--CC-CCCCCCCcEEeecCCc
Q 045261 142 DCPNLTSLPKVGLPSSLLDLCIFNCPNLTSL--PK-VGLPSSLLELTIFDCP 190 (227)
Q Consensus 142 ~c~~l~~~~~~~~~~~L~~l~i~~c~~l~~~--~~-~~~~~~L~~L~l~~c~ 190 (227)
+ +.++.+|..+.+++|+.|+++++. ++.+ |. .+.+++|+.|++++++
T Consensus 495 ~-N~l~~lp~l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~ 544 (567)
T 1dce_A 495 D-NALENVDGVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNS 544 (567)
T ss_dssp S-SCCCCCGGGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred C-CCCCCCcccCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCc
Confidence 9 578888855678899999999865 5555 43 3458999999999876
No 114
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.12 E-value=2.2e-10 Score=83.40 Aligned_cols=105 Identities=20% Similarity=0.238 Sum_probs=44.4
Q ss_pred cccCCccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccc-cCCCCCCccCCCCccEEeecCCCCCccCCC--
Q 045261 75 LHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKN-LSSSSSGFHSLTSLRRLLIQDCPNLTSLPK-- 151 (227)
Q Consensus 75 ~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~-l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~-- 151 (227)
+..+++|++|++++| .+..+ ..+. .+++|++|+++++ .+.. +| ..+.++++|++|+++++ .+..++.
T Consensus 45 ~~~l~~L~~L~l~~n-~l~~~-~~~~---~l~~L~~L~Ls~N-~l~~~~~---~~~~~l~~L~~L~Ls~N-~l~~~~~~~ 114 (168)
T 2ell_A 45 TAEFVNLEFLSLINV-GLISV-SNLP---KLPKLKKLELSEN-RIFGGLD---MLAEKLPNLTHLNLSGN-KLKDISTLE 114 (168)
T ss_dssp CGGGGGCCEEEEESS-CCCCC-SSCC---CCSSCCEEEEESC-CCCSCCC---HHHHHCTTCCEEECBSS-SCCSSGGGG
T ss_pred HHhCCCCCEEeCcCC-CCCCh-hhhc---cCCCCCEEECcCC-cCchHHH---HHHhhCCCCCEEeccCC-ccCcchhHH
Confidence 344444444444444 23333 2221 3444555555442 2222 33 33333445555555442 3333321
Q ss_pred -CCCCCccceeeecCCCCCCCCCC-----CCCCCCCcEEeecCCc
Q 045261 152 -VGLPSSLLDLCIFNCPNLTSLPK-----VGLPSSLLELTIFDCP 190 (227)
Q Consensus 152 -~~~~~~L~~l~i~~c~~l~~~~~-----~~~~~~L~~L~l~~c~ 190 (227)
...+++|++|++++++ +..++. ...+++|++|++.+|.
T Consensus 115 ~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 115 PLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp GGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred HHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCC
Confidence 1233444444444432 222222 1235666666666654
No 115
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.12 E-value=9e-11 Score=86.26 Aligned_cols=135 Identities=19% Similarity=0.163 Sum_probs=86.4
Q ss_pred cCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCccC-cCC
Q 045261 25 MHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGM-MGM 102 (227)
Q Consensus 25 ~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~-~~~ 102 (227)
+.++.+|++|+++++. +..++.. ...++|+.|++ ++ +.++ .+ ..+..+++|++|+++++ .+..+|... .
T Consensus 15 ~~~~~~L~~L~l~~n~-l~~i~~~~~~~~~L~~L~L-s~-N~l~-~~--~~l~~l~~L~~L~Ls~N-~l~~~~~~~~~-- 85 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDF-SD-NEIR-KL--DGFPLLRRLKTLLVNNN-RICRIGEGLDQ-- 85 (176)
T ss_dssp EECTTSCEEEECTTSC-CCSCCCGGGGTTCCSEEEC-CS-SCCC-EE--CCCCCCSSCCEEECCSS-CCCEECSCHHH--
T ss_pred cCCcCCceEEEeeCCC-CchhHHhhhcCCCCCEEEC-CC-CCCC-cc--cccccCCCCCEEECCCC-cccccCcchhh--
Confidence 4567788888888863 6666544 33448888888 66 3454 22 35777888888888876 666676543 3
Q ss_pred CCCCccceEEEecCCCccccCCCCC--CccCCCCccEEeecCCCCCccCCCCCCCCccceeeecCCCCCCCCCCCCCCCC
Q 045261 103 TLPTSLVHLNIVEFQKLKNLSSSSS--GFHSLTSLRRLLIQDCPNLTSLPKVGLPSSLLDLCIFNCPNLTSLPKVGLPSS 180 (227)
Q Consensus 103 ~~~~~L~~L~l~~~~~l~~l~~~~~--~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~L~~l~i~~c~~l~~~~~~~~~~~ 180 (227)
.+++|+.|++++ +.+..+| . .+..+++|++|+++++ .+..++.... . ....+++
T Consensus 86 -~l~~L~~L~L~~-N~i~~~~---~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~------~------------~~~~l~~ 141 (176)
T 1a9n_A 86 -ALPDLTELILTN-NSLVELG---DLDPLASLKSLTYLCILRN-PVTNKKHYRL------Y------------VIYKVPQ 141 (176)
T ss_dssp -HCTTCCEEECCS-CCCCCGG---GGGGGGGCTTCCEEECCSS-GGGGSTTHHH------H------------HHHHCTT
T ss_pred -cCCCCCEEECCC-CcCCcch---hhHhhhcCCCCCEEEecCC-CCCCcHhHHH------H------------HHHHCCc
Confidence 567888888877 4666666 4 6677788888888774 3444443100 0 0113567
Q ss_pred CcEEeecCCchh
Q 045261 181 LLELTIFDCPKL 192 (227)
Q Consensus 181 L~~L~l~~c~~l 192 (227)
|+.|++.++..-
T Consensus 142 L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 142 VRVLDFQKVKLK 153 (176)
T ss_dssp CSEETTEECCHH
T ss_pred cceeCCCcCCHH
Confidence 788888777643
No 116
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.11 E-value=1.8e-12 Score=106.90 Aligned_cols=58 Identities=12% Similarity=0.175 Sum_probs=33.1
Q ss_pred CCCccEEEeccCC--CCC-cCCccc-------CCCCCcceEeecCCCCCcc-----cCCC-CCCCCcceeEeccCc
Q 045261 4 PESISSVEIRRCE--KLG-ALPSDM-------HKLNSLQDLDIRECPSIVS-----FPEE-GFPTNLTSLAIGEDM 63 (227)
Q Consensus 4 ~~~L~~L~l~~~~--~l~-~lp~~~-------~~l~~L~~L~l~~c~~l~~-----~~~~-~~l~~L~~L~l~~~~ 63 (227)
+++|+.|++++|. .+. .+|..+ ..+++|++|+++++. +.. ++.. ..+++|+.|++ ++|
T Consensus 59 ~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~L~~L~L-~~n 132 (386)
T 2ca6_A 59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-FGPTAQEPLIDFLSKHTPLEHLYL-HNN 132 (386)
T ss_dssp CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-CCTTTHHHHHHHHHHCTTCCEEEC-CSS
T ss_pred CCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc-CCHHHHHHHHHHHHhCCCCCEEEC-cCC
Confidence 5677778777752 111 234333 567777777777764 322 2222 45567777777 554
No 117
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.09 E-value=1.1e-09 Score=81.73 Aligned_cols=124 Identities=19% Similarity=0.301 Sum_probs=97.4
Q ss_pred cEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCccceEEe
Q 045261 8 SSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLI 86 (227)
Q Consensus 8 ~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l 86 (227)
+.+++++ ..++++|..+ .++|++|+++++ .+..+|.. ..+++|+.|++ ++ +.++ .+.+..+..+++|++|++
T Consensus 13 ~~l~~~~-~~l~~ip~~~--~~~l~~L~L~~n-~i~~ip~~~~~l~~L~~L~L-s~-N~i~-~i~~~~f~~l~~L~~L~L 85 (193)
T 2wfh_A 13 TVVRCSN-KGLKVLPKGI--PRDVTELYLDGN-QFTLVPKELSNYKHLTLIDL-SN-NRIS-TLSNQSFSNMTQLLTLIL 85 (193)
T ss_dssp TEEECTT-SCCSSCCSCC--CTTCCEEECCSS-CCCSCCGGGGGCTTCCEEEC-CS-SCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CEEEcCC-CCCCcCCCCC--CCCCCEEECCCC-cCchhHHHhhcccCCCEEEC-CC-CcCC-EeCHhHccCCCCCCEEEC
Confidence 5678887 4678888755 368999999986 47777755 78899999999 66 5665 555667899999999999
Q ss_pred ccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCC
Q 045261 87 ERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCP 144 (227)
Q Consensus 87 ~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~ 144 (227)
+++ .++.++.... ..+++|+.|++++ +.+..++ ...+..+++|++|++++++
T Consensus 86 s~N-~l~~i~~~~f--~~l~~L~~L~L~~-N~l~~~~--~~~~~~l~~L~~L~L~~N~ 137 (193)
T 2wfh_A 86 SYN-RLRCIPPRTF--DGLKSLRLLSLHG-NDISVVP--EGAFNDLSALSHLAIGANP 137 (193)
T ss_dssp CSS-CCCBCCTTTT--TTCTTCCEEECCS-SCCCBCC--TTTTTTCTTCCEEECCSSC
T ss_pred CCC-ccCEeCHHHh--CCCCCCCEEECCC-CCCCeeC--hhhhhcCccccEEEeCCCC
Confidence 997 6777765322 2689999999998 6788887 4568899999999999854
No 118
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.04 E-value=4.9e-09 Score=76.85 Aligned_cols=125 Identities=22% Similarity=0.371 Sum_probs=82.3
Q ss_pred ccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCccceE
Q 045261 7 ISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWL 84 (227)
Q Consensus 7 L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L 84 (227)
.+.+++++ ..++.+|..+ .++|++|+++++. +..++.. ..+++|++|++ ++ +.+. .+++..+..+++|++|
T Consensus 9 ~~~l~~~~-~~l~~~p~~~--~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l-~~-n~l~-~~~~~~~~~l~~L~~L 81 (177)
T 2o6r_A 9 GTEIRCNS-KGLTSVPTGI--PSSATRLELESNK-LQSLPHGVFDKLTQLTKLSL-SQ-NQIQ-SLPDGVFDKLTKLTIL 81 (177)
T ss_dssp TTEEECCS-SCCSSCCTTC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEEC-CS-SCCC-CCCTTTTTTCTTCCEE
T ss_pred CCEEEecC-CCCccCCCCC--CCCCcEEEeCCCc-ccEeCHHHhcCcccccEEEC-CC-Ccce-EeChhHccCCCccCEE
Confidence 34566666 3466666433 3678888887754 5555553 56778888888 65 4454 4444456778888888
Q ss_pred EeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCC
Q 045261 85 LIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCP 144 (227)
Q Consensus 85 ~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~ 144 (227)
+++++ .++.++.... ..+++|++|++++ +.+..++ ...+..+++|++|++++++
T Consensus 82 ~l~~N-~l~~~~~~~~--~~l~~L~~L~l~~-N~l~~~~--~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 82 YLHEN-KLQSLPNGVF--DKLTQLKELALDT-NQLKSVP--DGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp ECCSS-CCCCCCTTTT--TTCTTCCEEECCS-SCCSCCC--TTTTTTCTTCCEEECCSSC
T ss_pred ECCCC-CccccCHHHh--hCCcccCEEECcC-CcceEeC--HHHhcCCcccCEEEecCCC
Confidence 88876 5666665432 1567888888877 4666776 3445677888888887753
No 119
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.03 E-value=3.1e-10 Score=101.01 Aligned_cols=109 Identities=17% Similarity=0.144 Sum_probs=66.5
Q ss_pred CcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCccCc
Q 045261 22 PSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMM 100 (227)
Q Consensus 22 p~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~ 100 (227)
+..+..+++|+.|+++++. +..++.. ..+++|+.|++ ++ +.++ .+ +..+..+++|++|++++| .++.+|..++
T Consensus 217 ~~~~~~l~~L~~L~Ls~n~-l~~l~~~~~~l~~L~~L~L-s~-N~l~-~l-p~~~~~l~~L~~L~Ls~N-~l~~lp~~~~ 290 (727)
T 4b8c_D 217 KDSKYDDQLWHALDLSNLQ-IFNISANIFKYDFLTRLYL-NG-NSLT-EL-PAEIKNLSNLRVLDLSHN-RLTSLPAELG 290 (727)
T ss_dssp -----CCCCCCEEECTTSC-CSCCCGGGGGCCSCSCCBC-TT-SCCS-CC-CGGGGGGTTCCEEECTTS-CCSSCCSSGG
T ss_pred hhhhccCCCCcEEECCCCC-CCCCChhhcCCCCCCEEEe-eC-CcCc-cc-ChhhhCCCCCCEEeCcCC-cCCccChhhc
Confidence 4456666777777777654 4455544 55677777777 55 3443 33 334666777777777766 4556666664
Q ss_pred CCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCC
Q 045261 101 GMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDC 143 (227)
Q Consensus 101 ~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c 143 (227)
.+++|++|++++ +.+..+| ..+..+++|++|+++++
T Consensus 291 ---~l~~L~~L~L~~-N~l~~lp---~~~~~l~~L~~L~L~~N 326 (727)
T 4b8c_D 291 ---SCFQLKYFYFFD-NMVTTLP---WEFGNLCNLQFLGVEGN 326 (727)
T ss_dssp ---GGTTCSEEECCS-SCCCCCC---SSTTSCTTCCCEECTTS
T ss_pred ---CCCCCCEEECCC-CCCCccC---hhhhcCCCccEEeCCCC
Confidence 566777777776 4566666 55777777777777774
No 120
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.03 E-value=1.9e-10 Score=82.00 Aligned_cols=111 Identities=20% Similarity=0.215 Sum_probs=70.3
Q ss_pred CCCcceEeecCCCCCc--ccCCC-CCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCc-cCccCcCCC
Q 045261 28 LNSLQDLDIRECPSIV--SFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESEC-FPDGMMGMT 103 (227)
Q Consensus 28 l~~L~~L~l~~c~~l~--~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~-l~~~~~~~~ 103 (227)
.++|++|++++|. +. .++.. ..+++|+.|++ +++ .+. .. ..+..+++|++|+++++ .+.. +|..+.
T Consensus 16 ~~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l-~~n-~l~-~~--~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~--- 85 (149)
T 2je0_A 16 PSDVKELVLDNSR-SNEGKLEGLTDEFEELEFLST-INV-GLT-SI--ANLPKLNKLKKLELSDN-RVSGGLEVLAE--- 85 (149)
T ss_dssp GGGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEEC-TTS-CCC-CC--TTCCCCTTCCEEECCSS-CCCSCTHHHHH---
T ss_pred CccCeEEEccCCc-CChhHHHHHHhhcCCCcEEEC-cCC-CCC-Cc--hhhhcCCCCCEEECCCC-cccchHHHHhh---
Confidence 4667888888875 44 56655 66778888888 664 444 22 35677778888888776 4444 555442
Q ss_pred CCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCC
Q 045261 104 LPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPK 151 (227)
Q Consensus 104 ~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~ 151 (227)
.+++|++|+++++ .+..++ ....+..+++|++|+++++ .+..++.
T Consensus 86 ~l~~L~~L~ls~N-~i~~~~-~~~~~~~l~~L~~L~l~~N-~l~~~~~ 130 (149)
T 2je0_A 86 KCPNLTHLNLSGN-KIKDLS-TIEPLKKLENLKSLDLFNC-EVTNLND 130 (149)
T ss_dssp HCTTCCEEECTTS-CCCSHH-HHGGGGGCTTCCEEECTTC-GGGGSTT
T ss_pred hCCCCCEEECCCC-cCCChH-HHHHHhhCCCCCEEeCcCC-cccchHH
Confidence 4677888888774 454432 0045667777888887774 4555544
No 121
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.03 E-value=6.1e-12 Score=109.05 Aligned_cols=128 Identities=13% Similarity=0.069 Sum_probs=75.5
Q ss_pred CCCccEEEeccCCCCCcCCcccC-CCCCcceEeecCCCCCcc--cCCC-CCCCCcceeEeccCcccccccc---hhcccc
Q 045261 4 PESISSVEIRRCEKLGALPSDMH-KLNSLQDLDIRECPSIVS--FPEE-GFPTNLTSLAIGEDMKMLYKGL---VQWGLH 76 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~-~l~~L~~L~l~~c~~l~~--~~~~-~~l~~L~~L~l~~~~~~l~~~~---~~~~~~ 76 (227)
+++|+.|++++|......+..+. .+++|++|++.+|..+.. ++.. ..+++|++|++ ++|. +.+.. ......
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L-~~~~-i~~~~~~~l~~~~~ 181 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDL-RESD-VDDVSGHWLSHFPD 181 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEEC-TTCE-EECCCGGGGGGSCT
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeC-cCCc-cCCcchHHHHHHhh
Confidence 57888888888753222233333 578888888888754543 2222 35778888888 7765 33221 112233
Q ss_pred cCCccceEEeccCCCCCccCc-----cCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeec
Q 045261 77 RLTSLRWLLIERCDESECFPD-----GMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQ 141 (227)
Q Consensus 77 ~l~~L~~L~l~~~~~l~~l~~-----~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~ 141 (227)
.+++|++|+++++. ..+.. ... .+++|++|++++|..+..++ ..+.++++|++|++.
T Consensus 182 ~~~~L~~L~l~~~~--~~~~~~~l~~l~~---~~~~L~~L~L~~~~~~~~l~---~~~~~~~~L~~L~l~ 243 (594)
T 2p1m_B 182 TYTSLVSLNISCLA--SEVSFSALERLVT---RCPNLKSLKLNRAVPLEKLA---TLLQRAPQLEELGTG 243 (594)
T ss_dssp TCCCCCEEECTTCC--SCCCHHHHHHHHH---HCTTCCEEECCTTSCHHHHH---HHHHHCTTCSEEECS
T ss_pred cCCcCcEEEecccC--CcCCHHHHHHHHH---hCCCCcEEecCCCCcHHHHH---HHHhcCCcceEcccc
Confidence 56778888888764 12211 111 35778888887775555555 555566666666543
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.01 E-value=1.2e-09 Score=94.61 Aligned_cols=106 Identities=18% Similarity=0.106 Sum_probs=61.5
Q ss_pred cceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCccCcCCCCCCccce
Q 045261 31 LQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVH 110 (227)
Q Consensus 31 L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~ 110 (227)
|+.|+++++ .+..+|....+++|+.|++ ++ +.++ .+ |..++.+++|++|+++++ .++.+| .+. .+++|+.
T Consensus 443 L~~L~Ls~n-~l~~lp~~~~l~~L~~L~L-s~-N~l~-~l-p~~~~~l~~L~~L~Ls~N-~l~~lp-~l~---~l~~L~~ 512 (567)
T 1dce_A 443 VRVLHLAHK-DLTVLCHLEQLLLVTHLDL-SH-NRLR-AL-PPALAALRCLEVLQASDN-ALENVD-GVA---NLPRLQE 512 (567)
T ss_dssp CSEEECTTS-CCSSCCCGGGGTTCCEEEC-CS-SCCC-CC-CGGGGGCTTCCEEECCSS-CCCCCG-GGT---TCSSCCE
T ss_pred ceEEEecCC-CCCCCcCccccccCcEeec-Cc-cccc-cc-chhhhcCCCCCEEECCCC-CCCCCc-ccC---CCCCCcE
Confidence 566666654 3445554455566666666 44 3343 33 334666666777777665 555566 343 5666777
Q ss_pred EEEecCCCcccc--CCCCCCccCCCCccEEeecCCCCCccCCC
Q 045261 111 LNIVEFQKLKNL--SSSSSGFHSLTSLRRLLIQDCPNLTSLPK 151 (227)
Q Consensus 111 L~l~~~~~l~~l--~~~~~~l~~l~~L~~L~l~~c~~l~~~~~ 151 (227)
|++++ +.+..+ | ..+..+++|+.|++++ +.+..+|.
T Consensus 513 L~Ls~-N~l~~~~~p---~~l~~l~~L~~L~L~~-N~l~~~~~ 550 (567)
T 1dce_A 513 LLLCN-NRLQQSAAI---QPLVSCPRLVLLNLQG-NSLCQEEG 550 (567)
T ss_dssp EECCS-SCCCSSSTT---GGGGGCTTCCEEECTT-SGGGGSSS
T ss_pred EECCC-CCCCCCCCc---HHHhcCCCCCEEEecC-CcCCCCcc
Confidence 77766 455554 5 5666677777777776 34555443
No 123
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.00 E-value=3.1e-11 Score=99.54 Aligned_cols=84 Identities=13% Similarity=0.105 Sum_probs=43.4
Q ss_pred CCCccEEEeccCCCCCc----CCcccCCCCCcceEeecCCC--CCc-ccCCC--------CCCCCcceeEeccCcccccc
Q 045261 4 PESISSVEIRRCEKLGA----LPSDMHKLNSLQDLDIRECP--SIV-SFPEE--------GFPTNLTSLAIGEDMKMLYK 68 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~----lp~~~~~l~~L~~L~l~~c~--~l~-~~~~~--------~~l~~L~~L~l~~~~~~l~~ 68 (227)
+++|+.|++++|..-.. ++..+..+++|++|++++|. .+. .+|.. ..+++|++|++ +++ .+.+
T Consensus 31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~L-s~n-~l~~ 108 (386)
T 2ca6_A 31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRL-SDN-AFGP 108 (386)
T ss_dssp CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEEC-CSC-CCCT
T ss_pred CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEEC-CCC-cCCH
Confidence 45677777777532222 23345667777777777652 111 11110 35567777777 553 3332
Q ss_pred c---chhcccccCCccceEEeccC
Q 045261 69 G---LVQWGLHRLTSLRWLLIERC 89 (227)
Q Consensus 69 ~---~~~~~~~~l~~L~~L~l~~~ 89 (227)
. ..+..+..+++|++|++++|
T Consensus 109 ~~~~~l~~~l~~~~~L~~L~L~~n 132 (386)
T 2ca6_A 109 TAQEPLIDFLSKHTPLEHLYLHNN 132 (386)
T ss_dssp TTHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHHHHHHhCCCCCEEECcCC
Confidence 1 12223455666666666665
No 124
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.99 E-value=2.8e-11 Score=104.90 Aligned_cols=135 Identities=16% Similarity=0.105 Sum_probs=91.2
Q ss_pred CCCccEEEeccCCCCCcCC---c------------ccCCCCCcceEeecCCCCCcccC-CC--CCCCCcceeEeccCccc
Q 045261 4 PESISSVEIRRCEKLGALP---S------------DMHKLNSLQDLDIRECPSIVSFP-EE--GFPTNLTSLAIGEDMKM 65 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp---~------------~~~~l~~L~~L~l~~c~~l~~~~-~~--~~l~~L~~L~l~~~~~~ 65 (227)
+++|+.|++++|..+..+. . ....+++|++|++++|. +.... .. ..+++|+.|++ .+|..
T Consensus 65 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L-~~~~~ 142 (594)
T 2p1m_B 65 FPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVL-SSCEG 142 (594)
T ss_dssp CTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEE-ESCEE
T ss_pred CCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeC-CCcCC
Confidence 5889999999987654321 1 12468899999999985 33221 11 25789999999 99877
Q ss_pred ccccchhcccccCCccceEEeccCCCCCc-----cCccCcCCCCCCccceEEEecCC-Ccc--ccCCCCCCccCCCCccE
Q 045261 66 LYKGLVQWGLHRLTSLRWLLIERCDESEC-----FPDGMMGMTLPTSLVHLNIVEFQ-KLK--NLSSSSSGFHSLTSLRR 137 (227)
Q Consensus 66 l~~~~~~~~~~~l~~L~~L~l~~~~~l~~-----l~~~~~~~~~~~~L~~L~l~~~~-~l~--~l~~~~~~l~~l~~L~~ 137 (227)
+.+...+..+..+++|++|++++|. +.. ++... ..+++|++|++++|. .+. .+. ....++++|++
T Consensus 143 ~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~---~~~~~L~~L~l~~~~~~~~~~~l~---~l~~~~~~L~~ 215 (594)
T 2p1m_B 143 FSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFP---DTYTSLVSLNISCLASEVSFSALE---RLVTRCPNLKS 215 (594)
T ss_dssp EEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSC---TTCCCCCEEECTTCCSCCCHHHHH---HHHHHCTTCCE
T ss_pred CCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHh---hcCCcCcEEEecccCCcCCHHHHH---HHHHhCCCCcE
Confidence 7643344445689999999999884 333 22222 157899999999875 121 122 22345799999
Q ss_pred EeecCCCCCc
Q 045261 138 LLIQDCPNLT 147 (227)
Q Consensus 138 L~l~~c~~l~ 147 (227)
|++.+|..+.
T Consensus 216 L~L~~~~~~~ 225 (594)
T 2p1m_B 216 LKLNRAVPLE 225 (594)
T ss_dssp EECCTTSCHH
T ss_pred EecCCCCcHH
Confidence 9999985443
No 125
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.98 E-value=7.6e-10 Score=98.47 Aligned_cols=151 Identities=15% Similarity=0.162 Sum_probs=77.1
Q ss_pred CCccEEEeccCCCCCcCCcccCCCCCcceEeecCC----CCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCC
Q 045261 5 ESISSVEIRRCEKLGALPSDMHKLNSLQDLDIREC----PSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLT 79 (227)
Q Consensus 5 ~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c----~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~ 79 (227)
+.++.|++.++ .+...+..+....+|..+.|... ..+...+.. ..+.+|+.|++ +++. +. .++. .+..++
T Consensus 173 ~~~~~l~L~~n-~~~~~~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~L-s~n~-l~-~l~~-~~~~l~ 247 (727)
T 4b8c_D 173 PLTPKIELFAN-GKDEANQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDL-SNLQ-IF-NISA-NIFKYD 247 (727)
T ss_dssp --------------------------------------------------CCCCCCEEEC-TTSC-CS-CCCG-GGGGCC
T ss_pred CccceEEeeCC-CCCcchhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEEC-CCCC-CC-CCCh-hhcCCC
Confidence 34566677663 34444544444444555444332 112222222 56778888888 6643 43 3333 355788
Q ss_pred ccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC-CCCCcc
Q 045261 80 SLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV-GLPSSL 158 (227)
Q Consensus 80 ~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~-~~~~~L 158 (227)
+|++|+++++ .+..+|..+. .+++|+.|++++ +.+..+| ..+..+++|++|+++++ .++.+|.. +.+++|
T Consensus 248 ~L~~L~Ls~N-~l~~lp~~~~---~l~~L~~L~Ls~-N~l~~lp---~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~~L 318 (727)
T 4b8c_D 248 FLTRLYLNGN-SLTELPAEIK---NLSNLRVLDLSH-NRLTSLP---AELGSCFQLKYFYFFDN-MVTTLPWEFGNLCNL 318 (727)
T ss_dssp SCSCCBCTTS-CCSCCCGGGG---GGTTCCEEECTT-SCCSSCC---SSGGGGTTCSEEECCSS-CCCCCCSSTTSCTTC
T ss_pred CCCEEEeeCC-cCcccChhhh---CCCCCCEEeCcC-CcCCccC---hhhcCCCCCCEEECCCC-CCCccChhhhcCCCc
Confidence 8888888887 6667887665 678888888887 4566777 77888888888888884 67777764 456778
Q ss_pred ceeeecCCCCC
Q 045261 159 LDLCIFNCPNL 169 (227)
Q Consensus 159 ~~l~i~~c~~l 169 (227)
++|+++++...
T Consensus 319 ~~L~L~~N~l~ 329 (727)
T 4b8c_D 319 QFLGVEGNPLE 329 (727)
T ss_dssp CCEECTTSCCC
T ss_pred cEEeCCCCccC
Confidence 88888876644
No 126
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.98 E-value=3e-11 Score=98.87 Aligned_cols=108 Identities=16% Similarity=0.193 Sum_probs=57.2
Q ss_pred CCCCccEEEeccCCCCCcCC-----cccCCCC-CcceEeecCCCCCcccCCC--C-----CCCCcceeEeccCccccccc
Q 045261 3 LPESISSVEIRRCEKLGALP-----SDMHKLN-SLQDLDIRECPSIVSFPEE--G-----FPTNLTSLAIGEDMKMLYKG 69 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp-----~~~~~l~-~L~~L~l~~c~~l~~~~~~--~-----~l~~L~~L~l~~~~~~l~~~ 69 (227)
..++|+.|++++|. ++..+ ..+..++ +|++|++++|. +...... . ..++|++|++ ++|. +.+.
T Consensus 20 ~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~L-s~n~-l~~~ 95 (362)
T 3goz_A 20 IPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNS-LGFKNSDELVQILAAIPANVTSLNL-SGNF-LSYK 95 (362)
T ss_dssp SCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEEC-CSSC-GGGS
T ss_pred CCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCC-CCHHHHHHHHHHHhccCCCccEEEC-cCCc-CChH
Confidence 34568888888865 55444 4566777 78888888763 4443221 1 1377777777 6643 4322
Q ss_pred chhc---ccccC-CccceEEeccCCCCCccCccCc-C-CCC-CCccceEEEec
Q 045261 70 LVQW---GLHRL-TSLRWLLIERCDESECFPDGMM-G-MTL-PTSLVHLNIVE 115 (227)
Q Consensus 70 ~~~~---~~~~l-~~L~~L~l~~~~~l~~l~~~~~-~-~~~-~~~L~~L~l~~ 115 (227)
.... .+..+ ++|++|++++| .+...+.... . ... +++|++|++++
T Consensus 96 ~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 147 (362)
T 3goz_A 96 SSDELVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRG 147 (362)
T ss_dssp CHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTT
T ss_pred HHHHHHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccC
Confidence 1110 12333 66777777766 3444332110 0 001 24566666665
No 127
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.97 E-value=2e-11 Score=99.89 Aligned_cols=173 Identities=10% Similarity=0.017 Sum_probs=104.3
Q ss_pred CccEEEeccCCCCCcCCcccCCC-----CCcceEeecCCCCCcccCCC------CCC-CCcceeEeccCcccccccchhc
Q 045261 6 SISSVEIRRCEKLGALPSDMHKL-----NSLQDLDIRECPSIVSFPEE------GFP-TNLTSLAIGEDMKMLYKGLVQW 73 (227)
Q Consensus 6 ~L~~L~l~~~~~l~~lp~~~~~l-----~~L~~L~l~~c~~l~~~~~~------~~l-~~L~~L~l~~~~~~l~~~~~~~ 73 (227)
+|+.|++++|..-...+..+..+ ++|++|++++|. +...+.. ..+ ++|++|++ +++. +.+.....
T Consensus 52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L-s~N~-l~~~~~~~ 128 (362)
T 3goz_A 52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITVLDL-GWND-FSSKSSSE 128 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHHTSCTTCCEEEC-CSSC-GGGSCHHH
T ss_pred ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-CChHHHHHHHHHHHhCCCCccEEEC-cCCc-CCcHHHHH
Confidence 89999999974333334444443 889999999875 5543321 223 78999999 7744 44222111
Q ss_pred ---cccc-CCccceEEeccCCCCCc-----cCccCcCCCCC-CccceEEEecCCCccccCCCCC----CccCC-CCccEE
Q 045261 74 ---GLHR-LTSLRWLLIERCDESEC-----FPDGMMGMTLP-TSLVHLNIVEFQKLKNLSSSSS----GFHSL-TSLRRL 138 (227)
Q Consensus 74 ---~~~~-l~~L~~L~l~~~~~l~~-----l~~~~~~~~~~-~~L~~L~l~~~~~l~~l~~~~~----~l~~l-~~L~~L 138 (227)
.+.. .++|++|++++| .+.. ++..+. .. ++|++|++++| .+.... .. .+... ++|++|
T Consensus 129 l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~---~~~~~L~~L~Ls~n-~l~~~~--~~~l~~~l~~~~~~L~~L 201 (362)
T 3goz_A 129 FKQAFSNLPASITSLNLRGN-DLGIKSSDELIQILA---AIPANVNSLNLRGN-NLASKN--CAELAKFLASIPASVTSL 201 (362)
T ss_dssp HHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHHHH---TSCTTCCEEECTTS-CGGGSC--HHHHHHHHHTSCTTCCEE
T ss_pred HHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHHHh---cCCccccEeeecCC-CCchhh--HHHHHHHHHhCCCCCCEE
Confidence 1233 358999999987 5542 222222 23 48999999884 554432 12 23345 489999
Q ss_pred eecCCCCCccC-----CCC--CCCCccceeeecCCCCCCCCCC------CCCCCCCcEEeecCCc
Q 045261 139 LIQDCPNLTSL-----PKV--GLPSSLLDLCIFNCPNLTSLPK------VGLPSSLLELTIFDCP 190 (227)
Q Consensus 139 ~l~~c~~l~~~-----~~~--~~~~~L~~l~i~~c~~l~~~~~------~~~~~~L~~L~l~~c~ 190 (227)
++++| .++.. +.. ...++|++|+++++. ++..+. ...+++|++|++++|.
T Consensus 202 ~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~~L~L~~n~ 264 (362)
T 3goz_A 202 DLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQTVYLDYDI 264 (362)
T ss_dssp ECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCSEEEEEHHH
T ss_pred ECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCCCccEEEeccCC
Confidence 99884 46552 221 123578888888864 444322 1345778888888775
No 128
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.96 E-value=2.4e-11 Score=105.35 Aligned_cols=33 Identities=15% Similarity=0.371 Sum_probs=16.7
Q ss_pred ccEEEeccCCCCCc--CCcccCCCCCcceEeecCC
Q 045261 7 ISSVEIRRCEKLGA--LPSDMHKLNSLQDLDIREC 39 (227)
Q Consensus 7 L~~L~l~~~~~l~~--lp~~~~~l~~L~~L~l~~c 39 (227)
|++|++++|..+.. ++....++++|++|++++|
T Consensus 140 L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~ 174 (592)
T 3ogk_B 140 LETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEES 174 (592)
T ss_dssp CCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTC
T ss_pred CcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccc
Confidence 66666666553221 1222235566666666665
No 129
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.96 E-value=1.3e-08 Score=75.80 Aligned_cols=124 Identities=22% Similarity=0.277 Sum_probs=90.1
Q ss_pred ceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchh-cccccCCccceEEeccCCCCCcc-CccCcCCCCCCccc
Q 045261 32 QDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQ-WGLHRLTSLRWLLIERCDESECF-PDGMMGMTLPTSLV 109 (227)
Q Consensus 32 ~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~-~~~~~l~~L~~L~l~~~~~l~~l-~~~~~~~~~~~~L~ 109 (227)
+.+++++. .+..+|.. ...++++|++ ++ +.+. .+.+ ..++.+++|++|+++++ .++.+ |..+. .+++|+
T Consensus 11 ~~l~~s~~-~l~~ip~~-~~~~l~~L~l-~~-n~i~-~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~---~l~~L~ 81 (192)
T 1w8a_A 11 TTVDCTGR-GLKEIPRD-IPLHTTELLL-ND-NELG-RISSDGLFGRLPHLVKLELKRN-QLTGIEPNAFE---GASHIQ 81 (192)
T ss_dssp TEEECTTS-CCSSCCSC-CCTTCSEEEC-CS-CCCC-SBCCSCSGGGCTTCCEEECCSS-CCCCBCTTTTT---TCTTCC
T ss_pred CEEEcCCC-CcCcCccC-CCCCCCEEEC-CC-CcCC-ccCCccccccCCCCCEEECCCC-CCCCcCHhHcC---CcccCC
Confidence 67888875 47778764 4559999999 66 4565 3333 24788999999999997 56665 55554 688999
Q ss_pred eEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC--CCCCccceeeecCCCC
Q 045261 110 HLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV--GLPSSLLDLCIFNCPN 168 (227)
Q Consensus 110 ~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~l~i~~c~~ 168 (227)
+|++++ +.+..++ ...+.++++|++|++++ +.+..++.. ..+++|++|++++++.
T Consensus 82 ~L~Ls~-N~l~~~~--~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 82 ELQLGE-NKIKEIS--NKMFLGLHQLKTLNLYD-NQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp EEECCS-CCCCEEC--SSSSTTCTTCCEEECCS-SCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred EEECCC-CcCCccC--HHHhcCCCCCCEEECCC-CcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 999998 6777766 36688999999999999 456655332 3456777777776553
No 130
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.93 E-value=7.4e-09 Score=83.48 Aligned_cols=173 Identities=16% Similarity=0.141 Sum_probs=107.9
Q ss_pred CCCccEEEeccCCCC--C-----------------cCC-cccCC--------CCCcceEeecCCCCCcccCCC--CCCCC
Q 045261 4 PESISSVEIRRCEKL--G-----------------ALP-SDMHK--------LNSLQDLDIRECPSIVSFPEE--GFPTN 53 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l--~-----------------~lp-~~~~~--------l~~L~~L~l~~c~~l~~~~~~--~~l~~ 53 (227)
+++|+.|+|+++... . .+| ..+.+ +++|+.+.+.+ .+..++.. ..+++
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~--~i~~I~~~aF~~~~~ 125 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE--KIKNIEDAAFKGCDN 125 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT--TCCEECTTTTTTCTT
T ss_pred hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc--cccchhHHHhhcCcc
Confidence 678999999986533 0 233 24456 88888888877 57777766 67888
Q ss_pred cceeEeccCcccccccchhcccccCCccceEEecc-----------------CCCCC---------ccCccC--------
Q 045261 54 LTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIER-----------------CDESE---------CFPDGM-------- 99 (227)
Q Consensus 54 L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~-----------------~~~l~---------~l~~~~-------- 99 (227)
|+.+++ .+ +.+. .+.+..+..+.++..+.... |..++ .++...
T Consensus 126 L~~l~l-~~-n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~ 202 (329)
T 3sb4_A 126 LKICQI-RK-KTAP-NLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPR 202 (329)
T ss_dssp CCEEEB-CC-SSCC-EECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGG
T ss_pred cceEEc-CC-CCcc-ccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCCcHHHHHhhcccCcc
Confidence 999988 55 3332 33444555554444443222 11111 000000
Q ss_pred -------cCC----------CCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCC--CCCccc-
Q 045261 100 -------MGM----------TLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVG--LPSSLL- 159 (227)
Q Consensus 100 -------~~~----------~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~--~~~~L~- 159 (227)
.+. ..+++|+++++.+ +.+..++ ...+.++++|+++++.+. +..++... ..++|+
T Consensus 203 ~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~-n~i~~I~--~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~ 277 (329)
T 3sb4_A 203 DINFLTIEGKLDNADFKLIRDYMPNLVSLDISK-TNATTIP--DFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAG 277 (329)
T ss_dssp GCSEEEEEECCCHHHHHHHHHHCTTCCEEECTT-BCCCEEC--TTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCE
T ss_pred ccceEEEeeeecHHHHHHHHHhcCCCeEEECCC-CCcceec--HhhhhCCCCCCEEECCcc--cceehHHHhhCChhccE
Confidence 000 0167888888886 4677887 677888889999988873 77777653 345687
Q ss_pred eeeecCCCCCCCCCCCCC--CCCCcEEeecC
Q 045261 160 DLCIFNCPNLTSLPKVGL--PSSLLELTIFD 188 (227)
Q Consensus 160 ~l~i~~c~~l~~~~~~~~--~~~L~~L~l~~ 188 (227)
.+.+.+ .++.++...+ +++|+++++.+
T Consensus 278 ~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~ 306 (329)
T 3sb4_A 278 TLELPA--SVTAIEFGAFMGCDNLRYVLATG 306 (329)
T ss_dssp EEEECT--TCCEECTTTTTTCTTEEEEEECS
T ss_pred EEEEcc--cceEEchhhhhCCccCCEEEeCC
Confidence 888876 6677765433 77888888753
No 131
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.92 E-value=5.2e-11 Score=103.22 Aligned_cols=84 Identities=12% Similarity=0.212 Sum_probs=44.5
Q ss_pred CCCccEEEeccCCCCC---cCCcccC------------CCCCcceEeecCCCCCccc-CCC--CCCC-CcceeEeccCcc
Q 045261 4 PESISSVEIRRCEKLG---ALPSDMH------------KLNSLQDLDIRECPSIVSF-PEE--GFPT-NLTSLAIGEDMK 64 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~---~lp~~~~------------~l~~L~~L~l~~c~~l~~~-~~~--~~l~-~L~~L~l~~~~~ 64 (227)
+++|+.|++++|..+. .+|..++ .+++|++|++++|. +... ... ..++ +|++|++ .+|.
T Consensus 72 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~L~~L~L-~~~~ 149 (592)
T 3ogk_B 72 FPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMI-VSDLDLDRLAKARADDLETLKL-DKCS 149 (592)
T ss_dssp CTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHHGGGCCEEEE-ESCE
T ss_pred CCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccE-ecHHHHHHHHHhccccCcEEEC-cCCC
Confidence 5678888887766543 2232222 56777777777763 2211 111 1122 3777777 6665
Q ss_pred cccccchhcccccCCccceEEeccC
Q 045261 65 MLYKGLVQWGLHRLTSLRWLLIERC 89 (227)
Q Consensus 65 ~l~~~~~~~~~~~l~~L~~L~l~~~ 89 (227)
.+...........+++|++|++++|
T Consensus 150 ~~~~~~l~~~~~~~~~L~~L~L~~~ 174 (592)
T 3ogk_B 150 GFTTDGLLSIVTHCRKIKTLLMEES 174 (592)
T ss_dssp EEEHHHHHHHHHHCTTCSEEECTTC
T ss_pred CcCHHHHHHHHhhCCCCCEEECccc
Confidence 4432222222345666666666665
No 132
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.80 E-value=6.5e-11 Score=99.54 Aligned_cols=130 Identities=15% Similarity=0.192 Sum_probs=69.7
Q ss_pred CCCccEEEeccCCCCC-----cCCcccCCCCCcceEeecCCCCCcccCC--C-CCCC----CcceeEeccCccccccc--
Q 045261 4 PESISSVEIRRCEKLG-----ALPSDMHKLNSLQDLDIRECPSIVSFPE--E-GFPT----NLTSLAIGEDMKMLYKG-- 69 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~-----~lp~~~~~l~~L~~L~l~~c~~l~~~~~--~-~~l~----~L~~L~l~~~~~~l~~~-- 69 (227)
+++|+.|++++|. ++ .++..+..+++|++|+++++. +..... . ..+. +|++|++ ++|. +.+.
T Consensus 27 ~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L-~~n~-i~~~~~ 102 (461)
T 1z7x_W 27 LQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSL-QNCC-LTGAGC 102 (461)
T ss_dssp HTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEEC-TTSC-CBGGGH
T ss_pred cCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEEc-cCCC-CCHHHH
Confidence 4567777777764 33 344556667777777777754 332111 0 1222 6777777 6653 3311
Q ss_pred -chhcccccCCccceEEeccCCCCCcc-----CccCcCCCCCCccceEEEecCCCccc-----cCCCCCCccCCCCccEE
Q 045261 70 -LVQWGLHRLTSLRWLLIERCDESECF-----PDGMMGMTLPTSLVHLNIVEFQKLKN-----LSSSSSGFHSLTSLRRL 138 (227)
Q Consensus 70 -~~~~~~~~l~~L~~L~l~~~~~l~~l-----~~~~~~~~~~~~L~~L~l~~~~~l~~-----l~~~~~~l~~l~~L~~L 138 (227)
..+..+..+++|++|+++++. +... ..... ...++|++|++++| .+.. ++ ..+..+++|++|
T Consensus 103 ~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~--~~~~~L~~L~L~~n-~l~~~~~~~l~---~~l~~~~~L~~L 175 (461)
T 1z7x_W 103 GVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLL--DPQCRLEKLQLEYC-SLSAASCEPLA---SVLRAKPDFKEL 175 (461)
T ss_dssp HHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHT--STTCCCCEEECTTS-CCBGGGHHHHH---HHHHHCTTCCEE
T ss_pred HHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHh--cCCCcceEEECCCC-CCCHHHHHHHH---HHHhhCCCCCEE
Confidence 223456677777777777763 3321 11111 02346777777664 3322 22 334455677777
Q ss_pred eecCCC
Q 045261 139 LIQDCP 144 (227)
Q Consensus 139 ~l~~c~ 144 (227)
+++++.
T Consensus 176 ~L~~n~ 181 (461)
T 1z7x_W 176 TVSNND 181 (461)
T ss_dssp ECCSSB
T ss_pred ECcCCC
Confidence 776643
No 133
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.79 E-value=4.8e-08 Score=78.69 Aligned_cols=168 Identities=14% Similarity=0.111 Sum_probs=113.3
Q ss_pred CCCccEEEeccCCCCCcCC-cccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccC-----------------c
Q 045261 4 PESISSVEIRRCEKLGALP-SDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGED-----------------M 63 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~-----------------~ 63 (227)
+++|+.|++.+ .++.++ ..+.++++|+.+++.+. .+..++.. ..+.++..+.. .. |
T Consensus 100 ~~~L~~l~L~~--~i~~I~~~aF~~~~~L~~l~l~~n-~i~~i~~~aF~~~~~l~~l~~-~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 100 KQTLEKVILSE--KIKNIEDAAFKGCDNLKICQIRKK-TAPNLLPEALADSVTAIFIPL-GSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp CTTCCC-CBCT--TCCEECTTTTTTCTTCCEEEBCCS-SCCEECTTSSCTTTCEEEECT-TCTHHHHTSTTTTTSCEEES
T ss_pred cCCCcEEECCc--cccchhHHHhhcCcccceEEcCCC-CccccchhhhcCCCceEEecC-cchhhhhccccccccccccc
Confidence 68899999987 567776 46889999999999875 35555554 33344444433 11 1
Q ss_pred ccccc--------cch---------h------------------cccccCCccceEEeccCCCCCccCccCcCCCCCCcc
Q 045261 64 KMLYK--------GLV---------Q------------------WGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSL 108 (227)
Q Consensus 64 ~~l~~--------~~~---------~------------------~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L 108 (227)
..+.. .+. + .....+++|+.+++.++ .++.++.... ..+++|
T Consensus 176 ~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~~~aF--~~~~~L 252 (329)
T 3sb4_A 176 EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKT-NATTIPDFTF--AQKKYL 252 (329)
T ss_dssp CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTB-CCCEECTTTT--TTCTTC
T ss_pred cccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCC-CcceecHhhh--hCCCCC
Confidence 11110 000 0 00013789999999986 6888887654 368899
Q ss_pred ceEEEecCCCccccCCCCCCccCCCCcc-EEeecCCCCCccCCCCC--CCCccceeeecCCCCCCCCCCCCC--CCCCcE
Q 045261 109 VHLNIVEFQKLKNLSSSSSGFHSLTSLR-RLLIQDCPNLTSLPKVG--LPSSLLDLCIFNCPNLTSLPKVGL--PSSLLE 183 (227)
Q Consensus 109 ~~L~l~~~~~l~~l~~~~~~l~~l~~L~-~L~l~~c~~l~~~~~~~--~~~~L~~l~i~~c~~l~~~~~~~~--~~~L~~ 183 (227)
+++++.+ ++..++ ...|.++++|+ .+++.+ .+..++... .+++|+.+++.. ..++.++...+ +++|++
T Consensus 253 ~~l~l~~--ni~~I~--~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ 325 (329)
T 3sb4_A 253 LKIKLPH--NLKTIG--QRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKL 325 (329)
T ss_dssp CEEECCT--TCCEEC--TTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCE
T ss_pred CEEECCc--ccceeh--HHHhhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCC-CccCccchhhhcCCcchhh
Confidence 9999987 388887 68899999999 999988 677887653 356899998865 35666665433 677777
Q ss_pred Ee
Q 045261 184 LT 185 (227)
Q Consensus 184 L~ 185 (227)
++
T Consensus 326 ly 327 (329)
T 3sb4_A 326 IY 327 (329)
T ss_dssp EE
T ss_pred hc
Confidence 65
No 134
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.79 E-value=5e-08 Score=71.11 Aligned_cols=102 Identities=25% Similarity=0.356 Sum_probs=65.4
Q ss_pred cceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCccCcCCCCCCccce
Q 045261 31 LQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVH 110 (227)
Q Consensus 31 L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~ 110 (227)
.+.+++++. .+..+|.. ..++|+.|++ ++ +.++ .+.+..+..+++|++|+++++ .++.++.... ..+++|++
T Consensus 11 ~~~l~~s~n-~l~~ip~~-~~~~l~~L~L-~~-N~i~-~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~~~f--~~l~~L~~ 82 (170)
T 3g39_A 11 GTTVDCSGK-SLASVPTG-IPTTTQVLYL-YD-NQIT-KLEPGVFDRLTQLTRLDLDNN-QLTVLPAGVF--DKLTQLTQ 82 (170)
T ss_dssp TTEEECTTS-CCSSCCSC-CCTTCSEEEC-CS-SCCC-CCCTTTTTTCTTCSEEECCSS-CCCCCCTTTT--TTCTTCCE
T ss_pred CCEEEeCCC-CcCccCcc-CCCCCcEEEc-CC-CcCC-ccChhhhcCcccCCEEECCCC-CcCccChhhc--cCCCCCCE
Confidence 356666653 35556653 3467777777 54 4554 444555677777788877776 5666665432 15677888
Q ss_pred EEEecCCCccccCCCCCCccCCCCccEEeecCC
Q 045261 111 LNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDC 143 (227)
Q Consensus 111 L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c 143 (227)
|++++ +.+..++ ...+.++++|++|+++++
T Consensus 83 L~L~~-N~l~~~~--~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 83 LSLND-NQLKSIP--RGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp EECCS-SCCCCCC--TTTTTTCTTCCEEECCSS
T ss_pred EECCC-CccCEeC--HHHhcCCCCCCEEEeCCC
Confidence 88877 5666666 345777778888888774
No 135
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.78 E-value=6e-08 Score=71.01 Aligned_cols=101 Identities=20% Similarity=0.350 Sum_probs=71.0
Q ss_pred ceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCccCcCCCCCCccceE
Q 045261 32 QDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHL 111 (227)
Q Consensus 32 ~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L 111 (227)
+.+++++. .+..+|.. ..++|+.|++ ++ +.+. .+.+..+..+++|++|+++++ .++.+|.... ..+++|+.|
T Consensus 15 ~~l~~~~n-~l~~iP~~-~~~~L~~L~L-s~-N~l~-~~~~~~~~~l~~L~~L~Ls~N-~l~~i~~~~~--~~l~~L~~L 86 (174)
T 2r9u_A 15 TLVNCQNI-RLASVPAG-IPTDKQRLWL-NN-NQIT-KLEPGVFDHLVNLQQLYFNSN-KLTAIPTGVF--DKLTQLTQL 86 (174)
T ss_dssp SEEECCSS-CCSSCCSC-CCTTCSEEEC-CS-SCCC-CCCTTTTTTCTTCCEEECCSS-CCCCCCTTTT--TTCTTCCEE
T ss_pred cEEEeCCC-CCCccCCC-cCCCCcEEEe-CC-CCcc-ccCHHHhcCCcCCCEEECCCC-CCCccChhHh--CCcchhhEE
Confidence 56666664 46666663 4478888888 55 5555 444556778888888888886 7777776542 157888888
Q ss_pred EEecCCCccccCCCCCCccCCCCccEEeecCC
Q 045261 112 NIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDC 143 (227)
Q Consensus 112 ~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c 143 (227)
++++ +.+..++ ...+..+++|++|+++++
T Consensus 87 ~L~~-N~l~~l~--~~~~~~l~~L~~L~L~~N 115 (174)
T 2r9u_A 87 DLND-NHLKSIP--RGAFDNLKSLTHIYLYNN 115 (174)
T ss_dssp ECCS-SCCCCCC--TTTTTTCTTCSEEECCSS
T ss_pred ECCC-CccceeC--HHHhccccCCCEEEeCCC
Confidence 8887 6777777 344778888888888884
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.78 E-value=8.1e-11 Score=98.98 Aligned_cols=175 Identities=18% Similarity=0.086 Sum_probs=93.1
Q ss_pred CCccEEEeccCCCCCc-----CCcccCCCCCcceEeecCCCCCcccC-----CC--CCCCCcceeEeccCcccccccc--
Q 045261 5 ESISSVEIRRCEKLGA-----LPSDMHKLNSLQDLDIRECPSIVSFP-----EE--GFPTNLTSLAIGEDMKMLYKGL-- 70 (227)
Q Consensus 5 ~~L~~L~l~~~~~l~~-----lp~~~~~l~~L~~L~l~~c~~l~~~~-----~~--~~l~~L~~L~l~~~~~~l~~~~-- 70 (227)
++|+.|++++|. ++. ++..+..+++|++|+++++. +.... .. ..+++|+.|++ ++| .+++..
T Consensus 199 ~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L-~~n-~l~~~~~~ 274 (461)
T 1z7x_W 199 CQLEALKLESCG-VTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLRTLWI-WEC-GITAKGCG 274 (461)
T ss_dssp CCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEEC-TTS-CCCHHHHH
T ss_pred CCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCceEEEC-cCC-CCCHHHHH
Confidence 456666666653 222 34445556666677666653 33211 11 23566777777 654 333110
Q ss_pred -hhcccccCCccceEEeccCCCCCc-----cCccCcCCCCCCccceEEEecCCCccc----cCCCCCCccCCCCccEEee
Q 045261 71 -VQWGLHRLTSLRWLLIERCDESEC-----FPDGMMGMTLPTSLVHLNIVEFQKLKN----LSSSSSGFHSLTSLRRLLI 140 (227)
Q Consensus 71 -~~~~~~~l~~L~~L~l~~~~~l~~-----l~~~~~~~~~~~~L~~L~l~~~~~l~~----l~~~~~~l~~l~~L~~L~l 140 (227)
.+..+..+++|++|+++++ .+.. +..... ...++|++|++++|.--.. ++ ..+..+++|++|++
T Consensus 275 ~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~--~~~~~L~~L~L~~n~l~~~~~~~l~---~~l~~~~~L~~L~L 348 (461)
T 1z7x_W 275 DLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLL--EPGCQLESLWVKSCSFTAACCSHFS---SVLAQNRFLLELQI 348 (461)
T ss_dssp HHHHHHHHCTTCCEEECTTC-CCHHHHHHHHHHHHT--STTCCCCEEECTTSCCBGGGHHHHH---HHHHHCSSCCEEEC
T ss_pred HHHHHHhhCCCcceEECCCC-CCchHHHHHHHHHhc--cCCccceeeEcCCCCCchHHHHHHH---HHHhhCCCccEEEc
Confidence 1223455677777777765 3322 111111 0235777777777542211 33 44556688888888
Q ss_pred cCCCCCccCCCC-------CCCCccceeeecCCCCCC----CCCCC-CCCCCCcEEeecCCc
Q 045261 141 QDCPNLTSLPKV-------GLPSSLLDLCIFNCPNLT----SLPKV-GLPSSLLELTIFDCP 190 (227)
Q Consensus 141 ~~c~~l~~~~~~-------~~~~~L~~l~i~~c~~l~----~~~~~-~~~~~L~~L~l~~c~ 190 (227)
+++ .++..+.. ...++|++|++++|..-. .++.. ..+++|++|++++|+
T Consensus 349 s~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 349 SNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp CSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred cCC-ccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 875 44432111 114578888888875322 33321 236788888888875
No 137
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.76 E-value=7.2e-08 Score=70.26 Aligned_cols=101 Identities=22% Similarity=0.270 Sum_probs=79.9
Q ss_pred CccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCccce
Q 045261 6 SISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRW 83 (227)
Q Consensus 6 ~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~ 83 (227)
..+.+++++ ..++++|..+ .++|++|+++++ .+..+++. ..+++|++|++ ++ +.++ .+++..+..+++|++
T Consensus 10 ~~~~l~~s~-n~l~~ip~~~--~~~l~~L~L~~N-~i~~~~~~~~~~l~~L~~L~L-s~-N~l~-~l~~~~f~~l~~L~~ 82 (170)
T 3g39_A 10 SGTTVDCSG-KSLASVPTGI--PTTTQVLYLYDN-QITKLEPGVFDRLTQLTRLDL-DN-NQLT-VLPAGVFDKLTQLTQ 82 (170)
T ss_dssp ETTEEECTT-SCCSSCCSCC--CTTCSEEECCSS-CCCCCCTTTTTTCTTCSEEEC-CS-SCCC-CCCTTTTTTCTTCCE
T ss_pred CCCEEEeCC-CCcCccCccC--CCCCcEEEcCCC-cCCccChhhhcCcccCCEEEC-CC-CCcC-ccChhhccCCCCCCE
Confidence 357789998 4678888766 388999999986 47777543 78899999999 66 5676 666666789999999
Q ss_pred EEeccCCCCCccCccCcCCCCCCccceEEEecC
Q 045261 84 LLIERCDESECFPDGMMGMTLPTSLVHLNIVEF 116 (227)
Q Consensus 84 L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~ 116 (227)
|+++++ .++.++.... ..+++|+.|+++++
T Consensus 83 L~L~~N-~l~~~~~~~~--~~l~~L~~L~L~~N 112 (170)
T 3g39_A 83 LSLNDN-QLKSIPRGAF--DNLKSLTHIWLLNN 112 (170)
T ss_dssp EECCSS-CCCCCCTTTT--TTCTTCCEEECCSS
T ss_pred EECCCC-ccCEeCHHHh--cCCCCCCEEEeCCC
Confidence 999997 7888877532 26899999999984
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.75 E-value=1.1e-11 Score=93.03 Aligned_cols=112 Identities=15% Similarity=0.156 Sum_probs=65.2
Q ss_pred CcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCcc
Q 045261 19 GALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDG 98 (227)
Q Consensus 19 ~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~ 98 (227)
..+|..+..+++|++|+++++. +..++....+++|+.|++ ++ +.+. .+ +..+..+++|++|+++++ .+..+|.
T Consensus 38 ~~l~~~~~~l~~L~~L~ls~n~-l~~l~~~~~l~~L~~L~l-~~-n~l~-~l-~~~~~~~~~L~~L~L~~N-~l~~l~~- 110 (198)
T 1ds9_A 38 EKMDATLSTLKACKHLALSTNN-IEKISSLSGMENLRILSL-GR-NLIK-KI-ENLDAVADTLEELWISYN-QIASLSG- 110 (198)
T ss_dssp CCCHHHHHHTTTCSEEECSEEE-ESCCCCHHHHTTCCEEEE-EE-EEEC-SC-SSHHHHHHHCSEEEEEEE-ECCCHHH-
T ss_pred hhhhHHHhcCCCCCEEECCCCC-CccccccccCCCCCEEEC-CC-CCcc-cc-cchhhcCCcCCEEECcCC-cCCcCCc-
Confidence 3344466777777777777653 555552255677777777 55 3343 32 223455567777777765 5555552
Q ss_pred CcCCCCCCccceEEEecCCCccccCCCC-CCccCCCCccEEeecCC
Q 045261 99 MMGMTLPTSLVHLNIVEFQKLKNLSSSS-SGFHSLTSLRRLLIQDC 143 (227)
Q Consensus 99 ~~~~~~~~~L~~L~l~~~~~l~~l~~~~-~~l~~l~~L~~L~l~~c 143 (227)
+. .+++|+.|++++ +.+..++ . ..+..+++|++|+++++
T Consensus 111 ~~---~l~~L~~L~l~~-N~i~~~~--~~~~l~~l~~L~~L~l~~N 150 (198)
T 1ds9_A 111 IE---KLVNLRVLYMSN-NKITNWG--EIDKLAALDKLEDLLLAGN 150 (198)
T ss_dssp HH---HHHHSSEEEESE-EECCCHH--HHHHHTTTTTCSEEEECSC
T ss_pred cc---cCCCCCEEECCC-CcCCchh--HHHHHhcCCCCCEEEecCC
Confidence 32 456777777776 3444443 1 24556677777777664
No 139
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.74 E-value=9.2e-08 Score=70.00 Aligned_cols=104 Identities=18% Similarity=0.220 Sum_probs=81.1
Q ss_pred cEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCccceEE
Q 045261 8 SSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLL 85 (227)
Q Consensus 8 ~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~ 85 (227)
+.+++++ ..++++|..+. ++|++|+++++. +..+++. ..+++|+.|++ ++ +.++ .+++..+..+++|++|+
T Consensus 15 ~~l~~~~-n~l~~iP~~~~--~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L-s~-N~l~-~i~~~~~~~l~~L~~L~ 87 (174)
T 2r9u_A 15 TLVNCQN-IRLASVPAGIP--TDKQRLWLNNNQ-ITKLEPGVFDHLVNLQQLYF-NS-NKLT-AIPTGVFDKLTQLTQLD 87 (174)
T ss_dssp SEEECCS-SCCSSCCSCCC--TTCSEEECCSSC-CCCCCTTTTTTCTTCCEEEC-CS-SCCC-CCCTTTTTTCTTCCEEE
T ss_pred cEEEeCC-CCCCccCCCcC--CCCcEEEeCCCC-ccccCHHHhcCCcCCCEEEC-CC-CCCC-ccChhHhCCcchhhEEE
Confidence 5788888 46788987664 889999999864 7767543 78899999999 66 5676 55665678999999999
Q ss_pred eccCCCCCccCcc-CcCCCCCCccceEEEecCCCccccC
Q 045261 86 IERCDESECFPDG-MMGMTLPTSLVHLNIVEFQKLKNLS 123 (227)
Q Consensus 86 l~~~~~l~~l~~~-~~~~~~~~~L~~L~l~~~~~l~~l~ 123 (227)
++++ .+..+|.. +. .+++|+.|++++ +.+...+
T Consensus 88 L~~N-~l~~l~~~~~~---~l~~L~~L~L~~-N~~~c~~ 121 (174)
T 2r9u_A 88 LNDN-HLKSIPRGAFD---NLKSLTHIYLYN-NPWDCEC 121 (174)
T ss_dssp CCSS-CCCCCCTTTTT---TCTTCSEEECCS-SCBCTTB
T ss_pred CCCC-ccceeCHHHhc---cccCCCEEEeCC-CCccccc
Confidence 9997 78888875 43 689999999998 4554443
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.67 E-value=1.7e-10 Score=86.34 Aligned_cols=124 Identities=14% Similarity=0.201 Sum_probs=92.6
Q ss_pred CCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCccc
Q 045261 4 PESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLR 82 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~ 82 (227)
+++|+.|++++| .+..+| .+.++++|++|+++++. +..+|.. ..+++|+.|++ ++ +.+. .+ + .+..+++|+
T Consensus 47 l~~L~~L~ls~n-~l~~l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L-~~-N~l~-~l-~-~~~~l~~L~ 118 (198)
T 1ds9_A 47 LKACKHLALSTN-NIEKIS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWI-SY-NQIA-SL-S-GIEKLVNLR 118 (198)
T ss_dssp TTTCSEEECSEE-EESCCC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEE-EE-EECC-CH-H-HHHHHHHSS
T ss_pred CCCCCEEECCCC-CCcccc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEEC-cC-CcCC-cC-C-ccccCCCCC
Confidence 578999999996 567788 78999999999999974 6677765 56689999999 76 4565 33 3 478899999
Q ss_pred eEEeccCCCCCccCc--cCcCCCCCCccceEEEecCCCccccCCC-------CCCccCCCCccEEe
Q 045261 83 WLLIERCDESECFPD--GMMGMTLPTSLVHLNIVEFQKLKNLSSS-------SSGFHSLTSLRRLL 139 (227)
Q Consensus 83 ~L~l~~~~~l~~l~~--~~~~~~~~~~L~~L~l~~~~~l~~l~~~-------~~~l~~l~~L~~L~ 139 (227)
+|+++++ .+..++. .+. .+++|++|+++++.-....|.. ...+..+++|+.|+
T Consensus 119 ~L~l~~N-~i~~~~~~~~l~---~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 119 VLYMSNN-KITNWGEIDKLA---ALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp EEEESEE-ECCCHHHHHHHT---TTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred EEECCCC-cCCchhHHHHHh---cCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 9999997 6666554 343 6899999999985332323300 01266788999887
No 141
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.64 E-value=1.3e-07 Score=76.68 Aligned_cols=100 Identities=17% Similarity=0.065 Sum_probs=78.3
Q ss_pred EEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCccceEEe
Q 045261 9 SVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLI 86 (227)
Q Consensus 9 ~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l 86 (227)
.++.++...++.+|. +..+++|+.|++++...+..++.. ..+++|+.|++ ++ +.++ .+.+..+..+++|++|++
T Consensus 12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l-~~-N~l~-~~~~~~~~~l~~L~~L~l 87 (347)
T 2ifg_A 12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTI-VK-SGLR-FVAPDAFHFTPRLSRLNL 87 (347)
T ss_dssp CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEEC-CS-SCCC-EECTTGGGSCSCCCEEEC
T ss_pred EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEEC-CC-Cccc-eeCHHHhcCCcCCCEEeC
Confidence 467777547888999 999999999999875568888754 78899999999 66 5676 556667889999999999
Q ss_pred ccCCCCCccCccCcCCCCCCccceEEEecC
Q 045261 87 ERCDESECFPDGMMGMTLPTSLVHLNIVEF 116 (227)
Q Consensus 87 ~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~ 116 (227)
+++ .+..+|.... ...+|+.|++.++
T Consensus 88 ~~N-~l~~~~~~~~---~~~~L~~l~l~~N 113 (347)
T 2ifg_A 88 SFN-ALESLSWKTV---QGLSLQELVLSGN 113 (347)
T ss_dssp CSS-CCSCCCSTTT---CSCCCCEEECCSS
T ss_pred CCC-ccceeCHHHc---ccCCceEEEeeCC
Confidence 987 7778887654 2234999999874
No 142
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.62 E-value=1.7e-08 Score=73.75 Aligned_cols=88 Identities=15% Similarity=0.121 Sum_probs=59.5
Q ss_pred CCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccC----CccceEEeccCCCCCccCccCcCC
Q 045261 29 NSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRL----TSLRWLLIERCDESECFPDGMMGM 102 (227)
Q Consensus 29 ~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l----~~L~~L~l~~~~~l~~l~~~~~~~ 102 (227)
..|++|++++|. +.+.... ..+++|+.|++ ++|..+++.... .+..+ ++|++|++++|..+++-.....
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L-~~C~~ItD~gL~-~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-- 135 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHMEGLQYVEKIRL-CKCHYIEDGCLE-RLSQLENLQKSMLEMEIISCGNVTDKGIIAL-- 135 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGGTTCSCCCEEEE-ESCTTCCHHHHH-HHHTCHHHHHHCCEEEEESCTTCCHHHHHHG--
T ss_pred ceEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEe-CCCCccCHHHHH-HHHhcccccCCCCEEEcCCCCcCCHHHHHHH--
Confidence 358888888886 5543322 67888888888 888888744333 23332 4688888888877766332211
Q ss_pred CCCCccceEEEecCCCccc
Q 045261 103 TLPTSLVHLNIVEFQKLKN 121 (227)
Q Consensus 103 ~~~~~L~~L~l~~~~~l~~ 121 (227)
..+++|++|++++|..+++
T Consensus 136 ~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 136 HHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GGCTTCCEEEEESCTTCCC
T ss_pred hcCCCCCEEECCCCCCCCc
Confidence 2568888888888887765
No 143
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.60 E-value=9.3e-09 Score=75.11 Aligned_cols=87 Identities=15% Similarity=0.224 Sum_probs=64.5
Q ss_pred CCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCC------CCccceeeecCCCCCCCCCC--CC
Q 045261 105 PTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGL------PSSLLDLCIFNCPNLTSLPK--VG 176 (227)
Q Consensus 105 ~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~------~~~L~~l~i~~c~~l~~~~~--~~ 176 (227)
-..|++|++++|. +++.. ...+.++++|++|++++|..+++-.-... .++|++|++++|+.+++-.. ..
T Consensus 60 ~~~L~~LDLs~~~-Itd~G--L~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~ 136 (176)
T 3e4g_A 60 KYKIQAIDATDSC-IMSIG--FDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH 136 (176)
T ss_dssp CCCEEEEEEESCC-CCGGG--GGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred CceEeEEeCcCCC-ccHHH--HHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence 3479999999986 65533 34567889999999999988766322211 24799999999998886432 23
Q ss_pred CCCCCcEEeecCCchhhh
Q 045261 177 LPSSLLELTIFDCPKLRK 194 (227)
Q Consensus 177 ~~~~L~~L~l~~c~~l~~ 194 (227)
.+++|++|++++|++++.
T Consensus 137 ~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 137 HFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp GCTTCCEEEEESCTTCCC
T ss_pred cCCCCCEEECCCCCCCCc
Confidence 479999999999998874
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.57 E-value=5e-06 Score=68.81 Aligned_cols=120 Identities=11% Similarity=0.154 Sum_probs=61.1
Q ss_pred ccEEEeccCCCCCcCC-cccCCCCCcceEeecCCCCCcccCCC-CCCCCcceeEeccCcccccccchhcccccCCccceE
Q 045261 7 ISSVEIRRCEKLGALP-SDMHKLNSLQDLDIRECPSIVSFPEE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWL 84 (227)
Q Consensus 7 L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~~~~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L 84 (227)
|+.+.+.+ .+..+. ..+.++++|+.+++..+ .+..++.. -...+|+.+.+ .+ .+. .+....|..+++|+.+
T Consensus 159 L~~i~lp~--~l~~I~~~aF~~c~~L~~l~l~~n-~l~~I~~~aF~~~~L~~l~l-p~--~l~-~I~~~aF~~~~~L~~l 231 (401)
T 4fdw_A 159 VQEIVFPS--TLEQLKEDIFYYCYNLKKADLSKT-KITKLPASTFVYAGIEEVLL-PV--TLK-EIGSQAFLKTSQLKTI 231 (401)
T ss_dssp CCEEECCT--TCCEECSSTTTTCTTCCEEECTTS-CCSEECTTTTTTCCCSEEEC-CT--TCC-EECTTTTTTCTTCCCE
T ss_pred ceEEEeCC--CccEehHHHhhCcccCCeeecCCC-cceEechhhEeecccCEEEe-CC--chh-eehhhHhhCCCCCCEE
Confidence 44444443 233333 34566666777766543 35555544 22456666666 32 232 3444556666677777
Q ss_pred EeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecC
Q 045261 85 LIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQD 142 (227)
Q Consensus 85 ~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~ 142 (227)
.+.. .++.++.... .-.+|+.+.+. +.+..++ ...+.++++|+.+.+.+
T Consensus 232 ~l~~--~l~~I~~~aF---~~~~L~~i~lp--~~i~~I~--~~aF~~c~~L~~l~l~~ 280 (401)
T 4fdw_A 232 EIPE--NVSTIGQEAF---RESGITTVKLP--NGVTNIA--SRAFYYCPELAEVTTYG 280 (401)
T ss_dssp ECCT--TCCEECTTTT---TTCCCSEEEEE--TTCCEEC--TTTTTTCTTCCEEEEES
T ss_pred ecCC--CccCcccccc---ccCCccEEEeC--CCccEEC--hhHhhCCCCCCEEEeCC
Confidence 7664 3444444332 11455555553 2444444 35555555666655544
No 145
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.57 E-value=2.4e-06 Score=70.80 Aligned_cols=167 Identities=10% Similarity=0.143 Sum_probs=114.1
Q ss_pred CCCCccEEEeccCCCCCcCCcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCc
Q 045261 3 LPESISSVEIRRCEKLGALPSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTS 80 (227)
Q Consensus 3 ~~~~L~~L~l~~~~~l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~ 80 (227)
-+++|+.+++++ +.+..++...-...+|+.+.+.. .+..++.. ..+++|+.+.+ .+ +++ .+....|.. .+
T Consensus 178 ~c~~L~~l~l~~-n~l~~I~~~aF~~~~L~~l~lp~--~l~~I~~~aF~~~~~L~~l~l-~~--~l~-~I~~~aF~~-~~ 249 (401)
T 4fdw_A 178 YCYNLKKADLSK-TKITKLPASTFVYAGIEEVLLPV--TLKEIGSQAFLKTSQLKTIEI-PE--NVS-TIGQEAFRE-SG 249 (401)
T ss_dssp TCTTCCEEECTT-SCCSEECTTTTTTCCCSEEECCT--TCCEECTTTTTTCTTCCCEEC-CT--TCC-EECTTTTTT-CC
T ss_pred CcccCCeeecCC-CcceEechhhEeecccCEEEeCC--chheehhhHhhCCCCCCEEec-CC--Ccc-Ccccccccc-CC
Confidence 367899999987 45777775544468899999874 47777766 67888999998 54 343 444555666 67
Q ss_pred cceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCcc-----ccCCCCCCccCCCCccEEeecCCCCCccCCCCCC-
Q 045261 81 LRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLK-----NLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGL- 154 (227)
Q Consensus 81 L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~-----~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~- 154 (227)
|+.+.+.+ .++.++.... ..+++|+.+.+.+. ... .++ ...+.++++|+.+.+.+ .+..++...+
T Consensus 250 L~~i~lp~--~i~~I~~~aF--~~c~~L~~l~l~~~-~~~~~~~~~I~--~~aF~~c~~L~~l~l~~--~i~~I~~~aF~ 320 (401)
T 4fdw_A 250 ITTVKLPN--GVTNIASRAF--YYCPELAEVTTYGS-TFNDDPEAMIH--PYCLEGCPKLARFEIPE--SIRILGQGLLG 320 (401)
T ss_dssp CSEEEEET--TCCEECTTTT--TTCTTCCEEEEESS-CCCCCTTCEEC--TTTTTTCTTCCEECCCT--TCCEECTTTTT
T ss_pred ccEEEeCC--CccEEChhHh--hCCCCCCEEEeCCc-cccCCcccEEC--HHHhhCCccCCeEEeCC--ceEEEhhhhhc
Confidence 88888854 4666655443 26788888888762 322 355 57788888888888874 4677766533
Q ss_pred -CCccceeeecCCCCCCCCCCCCC--CCCCcEEeecCC
Q 045261 155 -PSSLLDLCIFNCPNLTSLPKVGL--PSSLLELTIFDC 189 (227)
Q Consensus 155 -~~~L~~l~i~~c~~l~~~~~~~~--~~~L~~L~l~~c 189 (227)
+++|+.+.+.+ .++.+....+ + +|+.+.+.+.
T Consensus 321 ~c~~L~~l~lp~--~l~~I~~~aF~~~-~L~~l~l~~n 355 (401)
T 4fdw_A 321 GNRKVTQLTIPA--NVTQINFSAFNNT-GIKEVKVEGT 355 (401)
T ss_dssp TCCSCCEEEECT--TCCEECTTSSSSS-CCCEEEECCS
T ss_pred CCCCccEEEECc--cccEEcHHhCCCC-CCCEEEEcCC
Confidence 45788888754 3555554333 5 7888888765
No 146
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.44 E-value=1.1e-06 Score=70.96 Aligned_cols=102 Identities=25% Similarity=0.257 Sum_probs=76.3
Q ss_pred eEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCcc-CcCCCCCCccceE
Q 045261 33 DLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDG-MMGMTLPTSLVHL 111 (227)
Q Consensus 33 ~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~-~~~~~~~~~L~~L 111 (227)
.++.++...+..+|....+++|+.|++ ++.+.+. .+++..+..+++|++|+++++ .+..++.. +. .+++|+.|
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l-~~~n~l~-~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~---~l~~L~~L 85 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYI-ENQQHLQ-HLELRDLRGLGELRNLTIVKS-GLRFVAPDAFH---FTPRLSRL 85 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEEC-CSCSSCC-EECGGGSCSCCCCSEEECCSS-CCCEECTTGGG---SCSCCCEE
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEc-cCCCCCC-CcChhHhccccCCCEEECCCC-ccceeCHHHhc---CCcCCCEE
Confidence 455555435677776566788999999 7667776 566667899999999999998 67777654 33 68999999
Q ss_pred EEecCCCccccCCCCCCccCCCCccEEeecCCC
Q 045261 112 NIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCP 144 (227)
Q Consensus 112 ~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~ 144 (227)
++++ +.+..+| ...+..++ |+.|++.+++
T Consensus 86 ~l~~-N~l~~~~--~~~~~~~~-L~~l~l~~N~ 114 (347)
T 2ifg_A 86 NLSF-NALESLS--WKTVQGLS-LQELVLSGNP 114 (347)
T ss_dssp ECCS-SCCSCCC--STTTCSCC-CCEEECCSSC
T ss_pred eCCC-CccceeC--HHHcccCC-ceEEEeeCCC
Confidence 9998 7888887 34455555 9999998843
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.39 E-value=2.3e-07 Score=75.80 Aligned_cols=129 Identities=16% Similarity=0.012 Sum_probs=60.4
Q ss_pred CCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCc-cCcCCCCCCccceEEEecCCC-------ccc
Q 045261 50 FPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPD-GMMGMTLPTSLVHLNIVEFQK-------LKN 121 (227)
Q Consensus 50 ~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~-~~~~~~~~~~L~~L~l~~~~~-------l~~ 121 (227)
.+++|+.|.+ .++..+. . + .+ .+++|++|++..| .+..-.. .+. ...+|+|++|+++.+.+ +..
T Consensus 170 ~~P~L~~L~L-~g~~~l~--l-~-~~-~~~~L~~L~L~~~-~l~~~~l~~l~-~~~lp~L~~L~L~~~~~~~~~~~~~~~ 241 (362)
T 2ra8_A 170 AMPLLNNLKI-KGTNNLS--I-G-KK-PRPNLKSLEIISG-GLPDSVVEDIL-GSDLPNLEKLVLYVGVEDYGFDGDMNV 241 (362)
T ss_dssp TCTTCCEEEE-ECCBTCB--C-C-SC-BCTTCSEEEEECS-BCCHHHHHHHH-HSBCTTCCEEEEECBCGGGTCCSCGGG
T ss_pred cCCCCcEEEE-eCCCCce--e-c-cc-cCCCCcEEEEecC-CCChHHHHHHH-HccCCCCcEEEEeccccccccchhHHH
Confidence 4566777766 5542221 1 1 12 2566777766654 2211100 000 01356677776642111 111
Q ss_pred cCCCCCCc--cCCCCccEEeecCCCCCcc----CCCCCCCCccceeeecCCCCCCC-----CCCC-CCCCCCcEEeecCC
Q 045261 122 LSSSSSGF--HSLTSLRRLLIQDCPNLTS----LPKVGLPSSLLDLCIFNCPNLTS-----LPKV-GLPSSLLELTIFDC 189 (227)
Q Consensus 122 l~~~~~~l--~~l~~L~~L~l~~c~~l~~----~~~~~~~~~L~~l~i~~c~~l~~-----~~~~-~~~~~L~~L~l~~c 189 (227)
+. ..+ ..+++|++|.+.+|..... +.....+++|++|+++.+ .+++ +... ..+++|+.|++++|
T Consensus 242 l~---~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n-~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 242 FR---PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp TG---GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSS-CCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred HH---HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCC-CCChHHHHHHHhhcccCCcceEEECCCC
Confidence 11 111 2467777777766542211 111124567777777653 3443 1111 13577888888877
Q ss_pred c
Q 045261 190 P 190 (227)
Q Consensus 190 ~ 190 (227)
.
T Consensus 318 ~ 318 (362)
T 2ra8_A 318 Y 318 (362)
T ss_dssp B
T ss_pred c
Confidence 4
No 148
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.22 E-value=5.2e-07 Score=73.70 Aligned_cols=158 Identities=16% Similarity=0.028 Sum_probs=95.9
Q ss_pred CCCccEEEeccCCC---------CCcCCcccCCCCCcceEeecCCCCCcccCCCCCCCCcceeEeccCcccccccchhc-
Q 045261 4 PESISSVEIRRCEK---------LGALPSDMHKLNSLQDLDIRECPSIVSFPEEGFPTNLTSLAIGEDMKMLYKGLVQW- 73 (227)
Q Consensus 4 ~~~L~~L~l~~~~~---------l~~lp~~~~~l~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~~~~~l~~~~~~~- 73 (227)
+++|+.|.+.+... ...+...+..+|+|++|.++++..+ .++. ..+++|+.|.+ ..|. +.......
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~~~~L~~L~L-~~~~-l~~~~l~~l 213 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KPRPNLKSLEI-ISGG-LPDSVVEDI 213 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CBCTTCSEEEE-ECSB-CCHHHHHHH
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-ccCCCCcEEEE-ecCC-CChHHHHHH
Confidence 57999999976421 1124445577899999999987433 2333 24789999999 7654 43221111
Q ss_pred ccccCCccceEEeccCC-------CCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCC
Q 045261 74 GLHRLTSLRWLLIERCD-------ESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNL 146 (227)
Q Consensus 74 ~~~~l~~L~~L~l~~~~-------~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l 146 (227)
....+++|++|+++.+. .+..+...... ..+|+|+.|++.+|...............+++|++|+++. +.+
T Consensus 214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~-~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~-n~L 291 (362)
T 2ra8_A 214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSK-DRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA-GVL 291 (362)
T ss_dssp HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCT-TTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS-SCC
T ss_pred HHccCCCCcEEEEeccccccccchhHHHHHHHHhc-CCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC-CCC
Confidence 12378999999986311 12222222210 1479999999998654322210001112578999999977 556
Q ss_pred ccC-----CCC-CCCCccceeeecCCC
Q 045261 147 TSL-----PKV-GLPSSLLDLCIFNCP 167 (227)
Q Consensus 147 ~~~-----~~~-~~~~~L~~l~i~~c~ 167 (227)
+.. +.. ...++|+.|++++|.
T Consensus 292 ~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 292 TDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp BHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred ChHHHHHHHhhcccCCcceEEECCCCc
Confidence 552 221 245789999998874
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.94 E-value=1e-07 Score=78.26 Aligned_cols=151 Identities=13% Similarity=0.131 Sum_probs=77.3
Q ss_pred CCCccEEEeccCCCCCc-----CCcccC-CCCCcceEeecCCCCCcccC--CC-CCCCCcceeEeccCcccccccchh--
Q 045261 4 PESISSVEIRRCEKLGA-----LPSDMH-KLNSLQDLDIRECPSIVSFP--EE-GFPTNLTSLAIGEDMKMLYKGLVQ-- 72 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~-----lp~~~~-~l~~L~~L~l~~c~~l~~~~--~~-~~l~~L~~L~l~~~~~~l~~~~~~-- 72 (227)
.++|+.|++++|. ++. +...+. ..++|++|++++|. +.... .. ..+++|+.|++ ++| .+.+....
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~L-s~n-~l~~~~~~~L 146 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGL-QLN-SLGPEACKDL 146 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEEC-CSS-CCCHHHHHHH
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhc-CCC-CCCHHHHHHH
Confidence 3567777777764 332 111222 23577777777764 32211 11 23456777777 664 34311111
Q ss_pred -ccc-ccCCccceEEeccCCCCCc-----cCccCcCCCCCCccceEEEecCCCccc-----cCCCCCCccCCCCccEEee
Q 045261 73 -WGL-HRLTSLRWLLIERCDESEC-----FPDGMMGMTLPTSLVHLNIVEFQKLKN-----LSSSSSGFHSLTSLRRLLI 140 (227)
Q Consensus 73 -~~~-~~l~~L~~L~l~~~~~l~~-----l~~~~~~~~~~~~L~~L~l~~~~~l~~-----l~~~~~~l~~l~~L~~L~l 140 (227)
..+ ...++|++|++++| .+.. +...+. ..++|++|++++| .+.+ +. ..+...++|++|++
T Consensus 147 ~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~---~~~~L~~L~Ls~N-~l~~~g~~~L~---~~L~~~~~L~~L~L 218 (372)
T 3un9_A 147 RDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLA---GNTSVTHLSLLHT-GLGDEGLELLA---AQLDRNRQLQELNV 218 (372)
T ss_dssp HHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHH---TCSSCCEEECTTS-SCHHHHHHHHH---HHGGGCSCCCEEEC
T ss_pred HHHHHhcCCccceeeCCCC-CCChHHHHHHHHHHh---cCCCcCEEeCCCC-CCCcHHHHHHH---HHHhcCCCcCeEEC
Confidence 011 23466777777776 4433 222222 4566777777774 3433 22 34455667777777
Q ss_pred cCCCCCccCCCC------CCCCccceeeecCCC
Q 045261 141 QDCPNLTSLPKV------GLPSSLLDLCIFNCP 167 (227)
Q Consensus 141 ~~c~~l~~~~~~------~~~~~L~~l~i~~c~ 167 (227)
++| .++..+.. ...++|++|++++|.
T Consensus 219 s~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 219 AYN-GAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp CSS-CCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred CCC-CCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 774 34332111 123566777777654
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.68 E-value=7e-06 Score=67.28 Aligned_cols=153 Identities=14% Similarity=0.050 Sum_probs=97.2
Q ss_pred CCCcceEeecCCCCCcccC-----CC--CCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCccCc
Q 045261 28 LNSLQDLDIRECPSIVSFP-----EE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMM 100 (227)
Q Consensus 28 l~~L~~L~l~~c~~l~~~~-----~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~ 100 (227)
+++|++|++++|. +.... .. ....+|++|++ ++| .+.+.........+++|++|++++| .+........
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~L-s~n-~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L 146 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNL-ASC-QLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDL 146 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEEC-TTC-CCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHH
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEe-cCC-CCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHH
Confidence 4678999999986 43221 11 24479999999 775 4542222223345678999999998 5543221110
Q ss_pred -CC--CCCCccceEEEecCCCccc-----cCCCCCCccCCCCccEEeecCCCCCccCCC------CCCCCccceeeecCC
Q 045261 101 -GM--TLPTSLVHLNIVEFQKLKN-----LSSSSSGFHSLTSLRRLLIQDCPNLTSLPK------VGLPSSLLDLCIFNC 166 (227)
Q Consensus 101 -~~--~~~~~L~~L~l~~~~~l~~-----l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~------~~~~~~L~~l~i~~c 166 (227)
.. ...++|++|++++| .+.. +. ..+...++|++|++++|. ++..+. -...++|++|++++|
T Consensus 147 ~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~---~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N 221 (372)
T 3un9_A 147 RDLLLHDQCQITTLRLSNN-PLTAAGVAVLM---EGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYN 221 (372)
T ss_dssp HHHHHSTTCCCCEEECCSS-CCHHHHHHHHH---HHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSS
T ss_pred HHHHHhcCCccceeeCCCC-CCChHHHHHHH---HHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCC
Confidence 00 13578999999996 4543 33 445678999999999954 654221 123468999999997
Q ss_pred CCCCCCCC------CCCCCCCcEEeecCCc
Q 045261 167 PNLTSLPK------VGLPSSLLELTIFDCP 190 (227)
Q Consensus 167 ~~l~~~~~------~~~~~~L~~L~l~~c~ 190 (227)
. +++... ....++|++|++++|+
T Consensus 222 ~-i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 222 G-AGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp C-CCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred C-CCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 5 333211 1125789999999986
No 151
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.00 E-value=0.00026 Score=55.09 Aligned_cols=79 Identities=16% Similarity=0.176 Sum_probs=42.1
Q ss_pred CCCCCcceEeecCCCCCcccC---CC-CCCCCcceeEeccCcccccccchhcccccCC--ccceEEeccCCCCCccCc--
Q 045261 26 HKLNSLQDLDIRECPSIVSFP---EE-GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLT--SLRWLLIERCDESECFPD-- 97 (227)
Q Consensus 26 ~~l~~L~~L~l~~c~~l~~~~---~~-~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~--~L~~L~l~~~~~l~~l~~-- 97 (227)
.++++|++|+++++. +..++ .. ..+++|+.|++ ++ +.+.+. ..+..+. +|++|++.+++-...+|.
T Consensus 167 ~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~L-s~-N~i~~~---~~l~~l~~l~L~~L~L~~Npl~~~~~~~~ 240 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNL-SG-NELKSE---RELDKIKGLKLEELWLDGNSLCDTFRDQS 240 (267)
T ss_dssp HHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEEC-TT-SCCCSG---GGGGGGTTSCCSEEECTTSTTGGGCSSHH
T ss_pred hhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEEC-CC-CccCCc---hhhhhcccCCcceEEccCCcCccccCcch
Confidence 356677777777653 44333 22 35677777777 44 455422 1223333 677777777644333431
Q ss_pred -----cCcCCCCCCccceEEE
Q 045261 98 -----GMMGMTLPTSLVHLNI 113 (227)
Q Consensus 98 -----~~~~~~~~~~L~~L~l 113 (227)
... .+|+|+.||-
T Consensus 241 ~y~~~il~---~~P~L~~LDg 258 (267)
T 3rw6_A 241 TYISAIRE---RFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHH---HCTTCCEESS
T ss_pred hHHHHHHH---HCcccCeECC
Confidence 111 4667776653
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.93 E-value=0.037 Score=44.84 Aligned_cols=33 Identities=12% Similarity=0.215 Sum_probs=13.7
Q ss_pred CCccceEEEecCCCccccCCCCCCccCCCCccEEee
Q 045261 105 PTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLI 140 (227)
Q Consensus 105 ~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l 140 (227)
+.+|+.+.+.+ +.+..++ ...+.++.+|+.+.+
T Consensus 285 c~~L~~i~l~~-~~i~~I~--~~aF~~c~~L~~i~l 317 (379)
T 4h09_A 285 CSNLTKVVMDN-SAIETLE--PRVFMDCVKLSSVTL 317 (379)
T ss_dssp CTTCCEEEECC-TTCCEEC--TTTTTTCTTCCEEEC
T ss_pred ccccccccccc-cccceeh--hhhhcCCCCCCEEEc
Confidence 34444444433 2333333 234444444444444
No 153
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=96.90 E-value=0.012 Score=47.83 Aligned_cols=114 Identities=12% Similarity=0.135 Sum_probs=79.8
Q ss_pred ccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCccCcC
Q 045261 24 DMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMG 101 (227)
Q Consensus 24 ~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~ 101 (227)
.+.++.+|+.+.+.. .+..++.. ..+.+|+.+.+ .. .+. .+....+..+.+|+.+.+.+. .++.++....
T Consensus 235 ~f~~~~~L~~i~lp~--~v~~I~~~aF~~~~~l~~i~l-~~--~i~-~i~~~aF~~c~~L~~i~l~~~-~i~~I~~~aF- 306 (379)
T 4h09_A 235 AFYGMKALDEIAIPK--NVTSIGSFLLQNCTALKTLNF-YA--KVK-TVPYLLCSGCSNLTKVVMDNS-AIETLEPRVF- 306 (379)
T ss_dssp TTTTCSSCCEEEECT--TCCEECTTTTTTCTTCCEEEE-CC--CCS-EECTTTTTTCTTCCEEEECCT-TCCEECTTTT-
T ss_pred cccCCccceEEEcCC--CccEeCccccceeehhccccc-cc--cce-ecccccccccccccccccccc-ccceehhhhh-
Confidence 456777888888865 36666655 56788888888 43 233 344556788999999999864 6777765443
Q ss_pred CCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCC
Q 045261 102 MTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKV 152 (227)
Q Consensus 102 ~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~ 152 (227)
..+.+|+.+.+.+ +++.+. ...+.++.+|+++.+.. .++.+...
T Consensus 307 -~~c~~L~~i~lp~--~l~~I~--~~aF~~C~~L~~i~ip~--~v~~I~~~ 350 (379)
T 4h09_A 307 -MDCVKLSSVTLPT--ALKTIQ--VYAFKNCKALSTISYPK--SITLIESG 350 (379)
T ss_dssp -TTCTTCCEEECCT--TCCEEC--TTTTTTCTTCCCCCCCT--TCCEECTT
T ss_pred -cCCCCCCEEEcCc--cccEEH--HHHhhCCCCCCEEEECC--ccCEEchh
Confidence 2678999999864 577776 57788889999888754 25555543
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.84 E-value=0.026 Score=46.09 Aligned_cols=76 Identities=17% Similarity=0.145 Sum_probs=43.8
Q ss_pred CCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCC--CCccceeeecCCCCCCCCCCCC--CCC
Q 045261 104 LPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGL--PSSLLDLCIFNCPNLTSLPKVG--LPS 179 (227)
Q Consensus 104 ~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~--~~~L~~l~i~~c~~l~~~~~~~--~~~ 179 (227)
.+.+|+.+.+.+ .+..++ ...+.++.+|+.+++.+ .++.++...+ ..+|+.+.+.. .++.+.... .|.
T Consensus 295 ~~~~L~~i~l~~--~i~~I~--~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~ 366 (394)
T 4fs7_A 295 GCSSLTEVKLLD--SVKFIG--EEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCI 366 (394)
T ss_dssp TCTTCCEEEECT--TCCEEC--TTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCT
T ss_pred cccccccccccc--ccceec--hhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCCC
Confidence 355667666643 455565 46677777777777754 3555655433 34666666643 244554432 256
Q ss_pred CCcEEeec
Q 045261 180 SLLELTIF 187 (227)
Q Consensus 180 ~L~~L~l~ 187 (227)
+|+++++.
T Consensus 367 ~L~~i~lp 374 (394)
T 4fs7_A 367 NLKKVELP 374 (394)
T ss_dssp TCCEEEEE
T ss_pred CCCEEEEC
Confidence 67776664
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.75 E-value=0.00037 Score=51.09 Aligned_cols=62 Identities=15% Similarity=0.130 Sum_probs=27.9
Q ss_pred CCCCCcceEeecCCCCCcc-----cCCC-CCCCCcceeEeccCcccccccc---hhcccccCCccceEEeccC
Q 045261 26 HKLNSLQDLDIRECPSIVS-----FPEE-GFPTNLTSLAIGEDMKMLYKGL---VQWGLHRLTSLRWLLIERC 89 (227)
Q Consensus 26 ~~l~~L~~L~l~~c~~l~~-----~~~~-~~l~~L~~L~l~~~~~~l~~~~---~~~~~~~l~~L~~L~l~~~ 89 (227)
...++|++|++++|..+.. +... ...++|++|++ +++. +.+.. ....+...++|++|++++|
T Consensus 33 ~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~L-s~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N 103 (185)
T 1io0_A 33 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSI-VGTR-SNDPVAFALAEMLKVNNTLKSLNVESN 103 (185)
T ss_dssp TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEEC-TTSC-CCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred hcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEEC-cCCC-CChHHHHHHHHHHHhCCCcCEEECcCC
Confidence 4456666666666522322 1111 33456666666 5432 32110 1112333455666666654
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.74 E-value=0.011 Score=48.37 Aligned_cols=110 Identities=15% Similarity=0.203 Sum_probs=69.0
Q ss_pred CcccCCC--CCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCc
Q 045261 42 IVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKL 119 (227)
Q Consensus 42 l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l 119 (227)
+..+... ..+.+|+.+.+ .+. .. .+....+..+++|+.+.+.. .++.++.... ..+.+|+++.+.+ ++
T Consensus 253 v~~i~~~aF~~c~~L~~i~l-p~~--~~-~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF--~~c~~L~~i~lp~--~v 322 (394)
T 4gt6_A 253 VARIETHAFDSCAYLASVKM-PDS--VV-SIGTGAFMNCPALQDIEFSS--RITELPESVF--AGCISLKSIDIPE--GI 322 (394)
T ss_dssp EEEECTTTTTTCSSCCEEEC-CTT--CC-EECTTTTTTCTTCCEEECCT--TCCEECTTTT--TTCTTCCEEECCT--TC
T ss_pred ceEcccceeeecccccEEec-ccc--cc-eecCcccccccccccccCCC--cccccCceee--cCCCCcCEEEeCC--cc
Confidence 4444443 56677787777 431 21 33445567778888887763 4666665443 2567888888754 46
Q ss_pred cccCCCCCCccCCCCccEEeecCCCCCccCCCCC--CCCccceeeecC
Q 045261 120 KNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVG--LPSSLLDLCIFN 165 (227)
Q Consensus 120 ~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~--~~~~L~~l~i~~ 165 (227)
+.+. ...+.++.+|+++.+.+ .+..++... ...+|+.+++.+
T Consensus 323 ~~I~--~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~~ 366 (394)
T 4gt6_A 323 TQIL--DDAFAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYSG 366 (394)
T ss_dssp CEEC--TTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEESS
T ss_pred cEeh--HhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEECC
Confidence 6665 56777888888888854 366666543 245677777664
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=96.58 E-value=0.00044 Score=50.69 Aligned_cols=105 Identities=14% Similarity=0.086 Sum_probs=64.9
Q ss_pred CCCccEEEeccCCCCCc-----CCcccCCCCCcceEeecCCCCCccc-----CCC-CCCCCcceeEeccCcccccccc--
Q 045261 4 PESISSVEIRRCEKLGA-----LPSDMHKLNSLQDLDIRECPSIVSF-----PEE-GFPTNLTSLAIGEDMKMLYKGL-- 70 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~-----lp~~~~~l~~L~~L~l~~c~~l~~~-----~~~-~~l~~L~~L~l~~~~~~l~~~~-- 70 (227)
.++|+.|++++|..++. +...+...++|++|++++|. +.+- ... ...++|++|++ ++ +.+.+..
T Consensus 35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L-~~-N~i~~~g~~ 111 (185)
T 1io0_A 35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNV-ES-NFISGSGIL 111 (185)
T ss_dssp CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEEC-CS-SCCCHHHHH
T ss_pred CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEEC-cC-CcCCHHHHH
Confidence 57899999999745542 34566778899999999985 4432 111 34578999999 66 4454221
Q ss_pred -hhcccccCCccceEEe--ccCCCCCc-----cCccCcCCCCCCccceEEEec
Q 045261 71 -VQWGLHRLTSLRWLLI--ERCDESEC-----FPDGMMGMTLPTSLVHLNIVE 115 (227)
Q Consensus 71 -~~~~~~~l~~L~~L~l--~~~~~l~~-----l~~~~~~~~~~~~L~~L~l~~ 115 (227)
....+...++|++|++ +++ .+.. +...+. ..++|++|++++
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~~~l~~~L~---~n~~L~~L~L~~ 160 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQ-PLGNNVEMEIANMLE---KNTTLLKFGYHF 160 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSS-CCCHHHHHHHHHHHH---HCSSCCEEECCC
T ss_pred HHHHHHHhCCCceEEEecCCCC-CCCHHHHHHHHHHHH---hCCCcCEEeccC
Confidence 1234566677888888 554 3332 111111 235566666655
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=96.44 E-value=0.0014 Score=51.05 Aligned_cols=43 Identities=26% Similarity=0.281 Sum_probs=20.1
Q ss_pred CCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccC
Q 045261 105 PTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSL 149 (227)
Q Consensus 105 ~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~ 149 (227)
+++|++|++++ +.+..++.-...+..+++|+.|++++ +.+..+
T Consensus 169 l~~L~~L~Ls~-N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~ 211 (267)
T 3rw6_A 169 IPELLSLNLSN-NRLYRLDDMSSIVQKAPNLKILNLSG-NELKSE 211 (267)
T ss_dssp CTTCCEEECTT-SCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSG
T ss_pred CCCCCEEECCC-CCCCCCccchhHHhhCCCCCEEECCC-CccCCc
Confidence 45566666655 34433320002334556666666655 344433
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=96.30 E-value=0.023 Score=46.40 Aligned_cols=107 Identities=15% Similarity=0.134 Sum_probs=80.6
Q ss_pred cccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCccceEEeccCCCCCccCccCc
Q 045261 23 SDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTSLRWLLIERCDESECFPDGMM 100 (227)
Q Consensus 23 ~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~L~~L~l~~~~~l~~l~~~~~ 100 (227)
..+.++.+|+.+.+.. .+..++.. ..+.+|+.+.+ .. .+. .+....|..+.+|+.+.+.. .++.+.....
T Consensus 259 ~aF~~c~~L~~i~lp~--~~~~I~~~aF~~c~~L~~i~l-~~--~i~-~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF 330 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPD--SVVSIGTGAFMNCPALQDIEF-SS--RIT-ELPESVFAGCISLKSIDIPE--GITQILDDAF 330 (394)
T ss_dssp TTTTTCSSCCEEECCT--TCCEECTTTTTTCTTCCEEEC-CT--TCC-EECTTTTTTCTTCCEEECCT--TCCEECTTTT
T ss_pred ceeeecccccEEeccc--ccceecCcccccccccccccC-CC--ccc-ccCceeecCCCCcCEEEeCC--cccEehHhHh
Confidence 3567888999999865 35556655 67889999998 43 343 45566788999999999975 4777765443
Q ss_pred CCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCC
Q 045261 101 GMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDC 143 (227)
Q Consensus 101 ~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c 143 (227)
..+.+|+++.+.+ .+..+. ...+.++++|+.+++.+.
T Consensus 331 --~~C~~L~~i~ip~--sv~~I~--~~aF~~C~~L~~i~~~~~ 367 (394)
T 4gt6_A 331 --AGCEQLERIAIPS--SVTKIP--ESAFSNCTALNNIEYSGS 367 (394)
T ss_dssp --TTCTTCCEEEECT--TCCBCC--GGGGTTCTTCCEEEESSC
T ss_pred --hCCCCCCEEEECc--ccCEEh--HhHhhCCCCCCEEEECCc
Confidence 2678999999964 577776 578899999999999874
No 160
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=96.06 E-value=0.062 Score=43.85 Aligned_cols=142 Identities=13% Similarity=0.107 Sum_probs=95.1
Q ss_pred CCCccEEEeccCCCCCcCC-cccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccCcccccccchhcccccCCc
Q 045261 4 PESISSVEIRRCEKLGALP-SDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGEDMKMLYKGLVQWGLHRLTS 80 (227)
Q Consensus 4 ~~~L~~L~l~~~~~l~~lp-~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~~~~l~~~~~~~~~~~l~~ 80 (227)
..+|+.+.+... +..+. ..+.++.+|+.+.+... ...++.. ..+.+++.+.. .. .. +....+..+.+
T Consensus 229 ~~~l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~--~~~i~~~~F~~~~~l~~~~~-~~-~~----i~~~~F~~~~~ 298 (394)
T 4fs7_A 229 KTGVKNIIIPDS--FTELGKSVFYGCTDLESISIQNN--KLRIGGSLFYNCSGLKKVIY-GS-VI----VPEKTFYGCSS 298 (394)
T ss_dssp TCCCCEEEECTT--CCEECSSTTTTCSSCCEEEECCT--TCEECSCTTTTCTTCCEEEE-CS-SE----ECTTTTTTCTT
T ss_pred cCCCceEEECCC--ceecccccccccccceeEEcCCC--cceeeccccccccccceecc-Cc-ee----ecccccccccc
Confidence 346777777642 33333 35678889999998753 4455544 66778888877 33 22 23445778889
Q ss_pred cceEEeccCCCCCccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCCCCccCCCCCC--CCcc
Q 045261 81 LRWLLIERCDESECFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCPNLTSLPKVGL--PSSL 158 (227)
Q Consensus 81 L~~L~l~~~~~l~~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~--~~~L 158 (227)
|+.+.+.. .++.++.... ..+.+|+.+++.+ .+..+. ...+.++.+|+.+.+... +..++...+ ..+|
T Consensus 299 L~~i~l~~--~i~~I~~~aF--~~c~~L~~i~lp~--~v~~I~--~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 299 LTEVKLLD--SVKFIGEEAF--ESCTSLVSIDLPY--LVEEIG--KRSFRGCTSLSNINFPLS--LRKIGANAFQGCINL 368 (394)
T ss_dssp CCEEEECT--TCCEECTTTT--TTCTTCCEECCCT--TCCEEC--TTTTTTCTTCCEECCCTT--CCEECTTTBTTCTTC
T ss_pred cccccccc--ccceechhhh--cCCCCCCEEEeCC--cccEEh--HHhccCCCCCCEEEECcc--ccEehHHHhhCCCCC
Confidence 99998875 4666665433 2678899998864 577776 578889999999998652 667766533 3567
Q ss_pred ceeeecC
Q 045261 159 LDLCIFN 165 (227)
Q Consensus 159 ~~l~i~~ 165 (227)
+.+++..
T Consensus 369 ~~i~lp~ 375 (394)
T 4fs7_A 369 KKVELPK 375 (394)
T ss_dssp CEEEEEG
T ss_pred CEEEECC
Confidence 7777653
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.22 E-value=0.037 Score=37.88 Aligned_cols=53 Identities=19% Similarity=0.285 Sum_probs=38.9
Q ss_pred eEEeccCCCCC--ccCccCcCCCCCCccceEEEecCCCccccCCCCCCccCCCCccEEeecCCC
Q 045261 83 WLLIERCDESE--CFPDGMMGMTLPTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQDCP 144 (227)
Q Consensus 83 ~L~l~~~~~l~--~l~~~~~~~~~~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~c~ 144 (227)
.++-++. .++ .+|..+ +++|+.|++++ +.+..++ ...+..+++|++|++.+++
T Consensus 12 ~v~Cs~~-~L~~~~vP~~l-----p~~l~~L~Ls~-N~l~~l~--~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRR-GLTWASLPTAF-----PVDTTELVLTG-NNLTALP--PGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSS-CCCTTTSCSCC-----CTTCSEEECTT-SCCSSCC--TTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCC-CCccccCCCCC-----CcCCCEEECCC-CcCCccC--hhhhhhccccCEEEecCCC
Confidence 4444443 566 777643 56899999988 7888888 5667888999999998854
No 162
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=92.20 E-value=0.18 Score=34.38 Aligned_cols=49 Identities=16% Similarity=0.248 Sum_probs=31.5
Q ss_pred EEEeccCCCCC--cCCcccCCCCCcceEeecCCCCCcccCCC--CCCCCcceeEeccC
Q 045261 9 SVEIRRCEKLG--ALPSDMHKLNSLQDLDIRECPSIVSFPEE--GFPTNLTSLAIGED 62 (227)
Q Consensus 9 ~L~l~~~~~l~--~lp~~~~~l~~L~~L~l~~c~~l~~~~~~--~~l~~L~~L~l~~~ 62 (227)
.++-++ ..++ .+|..+ -++|++|+++++ .+..++.. ..+++|+.|+| .+
T Consensus 12 ~v~Cs~-~~L~~~~vP~~l--p~~l~~L~Ls~N-~l~~l~~~~f~~l~~L~~L~L-~~ 64 (130)
T 3rfe_A 12 LVDCGR-RGLTWASLPTAF--PVDTTELVLTGN-NLTALPPGLLDALPALRTAHL-GA 64 (130)
T ss_dssp EEECCS-SCCCTTTSCSCC--CTTCSEEECTTS-CCSSCCTTTGGGCTTCCEEEC-CS
T ss_pred EEEeCC-CCCccccCCCCC--CcCCCEEECCCC-cCCccChhhhhhccccCEEEe-cC
Confidence 344555 3455 666432 235888888875 57777765 56778888888 54
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=77.80 E-value=1.1 Score=32.99 Aligned_cols=108 Identities=15% Similarity=0.110 Sum_probs=55.5
Q ss_pred CCCCCcceEeecCCCCCccc-----CCC-CCCCCcceeEeccCccccccc---chhcccccCCccceEEeccCCCCCc--
Q 045261 26 HKLNSLQDLDIRECPSIVSF-----PEE-GFPTNLTSLAIGEDMKMLYKG---LVQWGLHRLTSLRWLLIERCDESEC-- 94 (227)
Q Consensus 26 ~~l~~L~~L~l~~c~~l~~~-----~~~-~~l~~L~~L~l~~~~~~l~~~---~~~~~~~~l~~L~~L~l~~~~~l~~-- 94 (227)
.+-+.|++|+++++..+..- ... ..-.+|+.|++ ++| .+.+. .....+..-+.|++|+++.+ .+..
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L-~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~G 114 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSL-ANT-AISDSEARGLIELIETSPSLRVLNVESN-FLTPEL 114 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEEC-TTS-CCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEc-cCC-CCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHH
Confidence 34456777777664334321 111 23467778887 553 33311 11223345567888888876 4432
Q ss_pred ---cCccCcCCCCCCccceEEEecCC--Cccc-----cCCCCCCccCCCCccEEeecC
Q 045261 95 ---FPDGMMGMTLPTSLVHLNIVEFQ--KLKN-----LSSSSSGFHSLTSLRRLLIQD 142 (227)
Q Consensus 95 ---l~~~~~~~~~~~~L~~L~l~~~~--~l~~-----l~~~~~~l~~l~~L~~L~l~~ 142 (227)
+-..+. .-..|++|+++++. .+.. +- ..+..-++|.+|++..
T Consensus 115 a~ala~aL~---~N~tL~~L~L~n~~~~~ig~~g~~~ia---~aL~~N~tL~~L~l~~ 166 (197)
T 1pgv_A 115 LARLLRSTL---VTQSIVEFKADNQRQSVLGNQVEMDMM---MAIEENESLLRVGISF 166 (197)
T ss_dssp HHHHHHHTT---TTCCCSEEECCCCSSCCCCHHHHHHHH---HHHHHCSSCCEEECCC
T ss_pred HHHHHHHHh---hCCceeEEECCCCcCcCcCHHHHHHHH---HHHHhCCCcCeEeccC
Confidence 222222 34568888887532 2221 21 2334456777777754
No 164
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=41.51 E-value=58 Score=20.54 Aligned_cols=34 Identities=18% Similarity=0.308 Sum_probs=16.1
Q ss_pred CCccceEEEecCCCccccCCCCCCccCCCCccEEeecC
Q 045261 105 PTSLVHLNIVEFQKLKNLSSSSSGFHSLTSLRRLLIQD 142 (227)
Q Consensus 105 ~~~L~~L~l~~~~~l~~l~~~~~~l~~l~~L~~L~l~~ 142 (227)
+.+|+++.|-. .++.+. ...|.++.+|+.+.+..
T Consensus 19 c~~L~~i~iP~--~v~~Ig--~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 19 NTVIREITVQP--NIGLLY--DGMFSGCTALEKLILTG 52 (100)
T ss_dssp CTTCCCEEECT--TSSCCC--TTSSTTCTTCCCEEECC
T ss_pred CCCCcEEEcCC--chheEc--HHHHhccCCccEEEEcC
Confidence 44455554432 333433 34455555555555544
Done!