BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045262
         (594 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9LI74|CHUP1_ARATH Protein CHUP1, chloroplastic OS=Arabidopsis thaliana GN=CHUP1 PE=1
           SV=1
          Length = 1004

 Score =  228 bits (581), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 177/490 (36%), Positives = 283/490 (57%), Gaps = 39/490 (7%)

Query: 12  LLVKFGVAFVFSLAGIFVVRLRKKGSKPSLPPPSSGFSDHGSEFELGVRAQHEDEVPNLK 71
           + V+ G     S+A + V RL  K SKPS P      SD+G   E G + Q  D   NL 
Sbjct: 1   MFVRIGFVVAASIAAVTVKRLNVKPSKPSKP------SDNG---EGGDKEQSVDPDYNLN 51

Query: 72  SVPSSCSVVSVASQRYEESYMEKVVVDNSMVGLSPSSRHSRDNNSYLLPEFNELVK-EID 130
                        Q  EE   E+V + NS++  +  S     ++  +LPEF +L+  EI+
Sbjct: 52  DK---------NLQEEEEEEEEEVKLINSVINQTRGSFSDYLDDD-ILPEFEDLLSGEIE 101

Query: 131 FGGPNVGYHPKKVIVTPKSDVENPRPCRGSEKDDCEQEVKNLKNMVQMLQDREKNLEVEL 190
           +  P+   + +K     K +VE             + E++ LK +V+ L++RE  LE EL
Sbjct: 102 YPLPDDDNNLEKAEKERKYEVEMAY---------NDGELERLKQLVKELEEREVKLEGEL 152

Query: 191 LEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEA 250
           LEYYGLKEQE+ ++ELQ +LK+  +E  +LN+ I SLQA+ ++L+ +++ +     ELE 
Sbjct: 153 LEYYGLKEQESDIVELQRQLKIKTVEIDMLNITINSLQAERKKLQEELSQNGIVRKELEV 212

Query: 251 AKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAE 310
           A+ KIK L+++++ +A Q + Q+L +++ V+ LQ +  +A   D + + +L+ ++ LE +
Sbjct: 213 ARNKIKELQRQIQLDANQTKGQLLLLKQHVSSLQMKEEEAMNKDTEVERKLKAVQDLEVQ 272

Query: 311 AEDLRKSNMKLQLENSQLARRLESTQ--MLEISVLEDGEREA-LNEMSQRLREENTSLSK 367
             +L++ N +LQ E  +L+ +L+S +  +  +S + + ++ A + E    L+  N  L K
Sbjct: 273 VMELKRKNRELQHEKRELSIKLDSAEARIATLSNMTESDKVAKVREEVNNLKHNNEDLLK 332

Query: 368 EVEKLHADKCAGVEELVYLKWINACLRYELRNYQPPAGKTVARDLSKTLSPNSEEKAKQL 427
           +VE L  ++ + VEELVYL+W+NACLRYELRNYQ PAGK  ARDLSK LSP S+ KAK+L
Sbjct: 333 QVEGLQMNRFSEVEELVYLRWVNACLRYELRNYQTPAGKISARDLSKNLSPKSQAKAKRL 392

Query: 428 ILEYAHAE-GHGNIMNIDSDHWSTSQASCITDSENHHDDSSADKSFSTKISSSNKTKFFH 486
           +LEYA +E G G+  +++S++   SQ S  +   +  D++S D S S   S S K     
Sbjct: 393 MLEYAGSERGQGDT-DLESNY---SQPS--SPGSDDFDNASMDSSTSRFSSFSKKPGLIQ 446

Query: 487 KLRKLVRGKD 496
           KL+K  + KD
Sbjct: 447 KLKKWGKSKD 456


>sp|P85120|DAPLE_XENLA Daple-like protein OS=Xenopus laevis GN=ccdc88c PE=1 SV=1
          Length = 2058

 Score = 41.2 bits (95), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 39/156 (25%), Positives = 81/156 (51%), Gaps = 18/156 (11%)

Query: 223 KIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTK 282
           +++ ++ +NR L   + D +  ++ELE         KK+L+   +Q++EQ+    E++ K
Sbjct: 583 RVKDIEMENRILHETIKDTSSKMNELEYE-------KKQLQKAFDQSKEQV----EKLDK 631

Query: 283 LQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISV 342
           ++++ H+    +     ++  +K++E + + L K N  L+ EN  L + L++ Q + I +
Sbjct: 632 MEKEVHRLEKQNEILTKKVTSIKIVEEKMQGLEKENEVLEGENIVLKKSLDTLQNVTIKL 691

Query: 343 LEDGEREALNEMSQRLREENTSLSKEVEKLHADKCA 378
                 E L   +++L EEN  L + VE +    CA
Sbjct: 692 ------EVLESENKQLDEENLELRRAVEAMRFS-CA 720


>sp|Q3V6T2|GRDN_HUMAN Girdin OS=Homo sapiens GN=CCDC88A PE=1 SV=2
          Length = 1871

 Score = 37.0 bits (84), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 114/231 (49%), Gaps = 34/231 (14%)

Query: 158 RGSEKDDCEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNR-LKLNNME 216
           +G   ++ E E+ +L+   ++LQ +  NL++   +   L EQE   +E +NR LK     
Sbjct: 623 KGERAEELENELHHLEKENELLQKKITNLKITCEKIEAL-EQENSELERENRKLKKTLDS 681

Query: 217 GRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLK---KKLRTEAEQNREQI 273
            + L  ++ESL+ +N +L+ +  +  + V  L+ A  K+  L+   K+L +E EQ ++ +
Sbjct: 682 FKNLTFQLESLEKENSQLDEENLELRRNVESLKCASMKMAQLQLENKELESEKEQLKKGL 741

Query: 274 LAVQERVTKLQEQAHKAAAIDPDTQSRLQ--------RLKVLEAEAEDLRKSNMKLQLEN 325
             ++    K +        +D + Q RLQ        +++ LE+E +D       L++EN
Sbjct: 742 ELLKASFKKTERLEVSYQGLDIENQ-RLQKTLENSNKKIQQLESELQD-------LEMEN 793

Query: 326 SQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHADK 376
             L + LE    L+IS          ++  ++L +EN SL +E  +L  DK
Sbjct: 794 QTLQKNLEE---LKIS----------SKRLEQLEKENKSLEQETSQLEKDK 831


>sp|Q5SNZ0|GRDN_MOUSE Girdin OS=Mus musculus GN=Ccdc88a PE=1 SV=2
          Length = 1873

 Score = 36.2 bits (82), Expect = 0.71,   Method: Compositional matrix adjust.
 Identities = 59/231 (25%), Positives = 114/231 (49%), Gaps = 34/231 (14%)

Query: 158 RGSEKDDCEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEG 217
           +G   ++ E E+ +L    ++LQ +  NL++   +   L EQE   +E +NR     ++ 
Sbjct: 623 KGERAEELENELNHLGKENELLQKKITNLKITCEKLETL-EQENSELERENRKFKKTLDS 681

Query: 218 -RLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLK---KKLRTEAEQNREQI 273
            + L  ++ESL+ +N +L+ +  +  ++V  L+ A  ++  L+   K+L +E EQ R+ +
Sbjct: 682 FKNLTFQLESLEKENSQLDEENLELRRSVESLKCASMRMAQLQLENKELESEKEQLRKGL 741

Query: 274 LAVQERVTKLQEQAHKAAAIDPDTQSRLQ--------RLKVLEAEAEDLRKSNMKLQLEN 325
             ++    K +        +D + Q RLQ        +++ LE+E +D       L++EN
Sbjct: 742 ELMRASFKKTERLEVSYQGLDTENQ-RLQKALENSNKKIQQLESELQD-------LEMEN 793

Query: 326 SQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHADK 376
             L + LE    L+IS          ++  ++L +EN SL +E  +L  DK
Sbjct: 794 QTLQKSLEE---LKIS----------SKRLEQLEKENKSLEQETSQLEKDK 831


>sp|Q8N4C6|NIN_HUMAN Ninein OS=Homo sapiens GN=NIN PE=1 SV=4
          Length = 2090

 Score = 35.8 bits (81), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 40/136 (29%), Positives = 73/136 (53%), Gaps = 11/136 (8%)

Query: 241  HAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSR 300
            H  T++ELE  KTK++ L +KL+      R  IL  Q+ V    E+  +  A+  D Q  
Sbjct: 1447 HQATIAELELEKTKLQELTRKLK-----ERVTILVKQKDVLSHGEKEEELKAMMHDLQIT 1501

Query: 301  L----QRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQ 356
                 Q++++L  E+E L++ N  L+ E + L    +S   L++  L +G +E + + ++
Sbjct: 1502 CSEMQQKVELLRYESEKLQQENSILRNEITTLNEE-DSISNLKLGTL-NGSQEEMWQKTE 1559

Query: 357  RLREENTSLSKEVEKL 372
             +++EN ++ K VE L
Sbjct: 1560 TVKQENAAVQKMVENL 1575


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.310    0.127    0.345 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 209,709,631
Number of Sequences: 539616
Number of extensions: 8886841
Number of successful extensions: 41207
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 2189
Number of HSP's that attempted gapping in prelim test: 34799
Number of HSP's gapped (non-prelim): 6186
length of query: 594
length of database: 191,569,459
effective HSP length: 123
effective length of query: 471
effective length of database: 125,196,691
effective search space: 58967641461
effective search space used: 58967641461
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 64 (29.3 bits)