Query 045262
Match_columns 594
No_of_seqs 84 out of 86
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 11:29:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045262.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045262hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0996 Structural maintenance 97.8 0.012 2.5E-07 70.5 27.5 208 165-382 783-1019(1293)
2 TIGR02169 SMC_prok_A chromosom 97.6 0.099 2.1E-06 61.2 31.3 8 487-494 614-621 (1164)
3 TIGR02169 SMC_prok_A chromosom 97.6 0.049 1.1E-06 63.7 28.7 29 165-193 256-284 (1164)
4 TIGR02168 SMC_prok_B chromosom 97.6 0.14 2.9E-06 59.7 31.3 51 350-400 884-934 (1179)
5 TIGR02168 SMC_prok_B chromosom 97.5 0.16 3.5E-06 59.1 31.3 29 164-192 674-702 (1179)
6 PRK11637 AmiB activator; Provi 97.5 0.11 2.3E-06 56.1 27.3 68 305-374 187-254 (428)
7 PHA02562 46 endonuclease subun 97.5 0.045 9.7E-07 59.8 24.5 35 203-237 215-249 (562)
8 PRK03918 chromosome segregatio 97.5 0.1 2.2E-06 60.1 28.5 115 170-287 165-282 (880)
9 COG1196 Smc Chromosome segrega 97.4 0.11 2.3E-06 62.9 29.2 99 166-264 231-341 (1163)
10 PRK03918 chromosome segregatio 97.4 0.099 2.1E-06 60.3 27.7 26 165-190 457-482 (880)
11 PRK02224 chromosome segregatio 97.4 0.1 2.2E-06 60.5 27.8 115 206-335 521-639 (880)
12 KOG0980 Actin-binding protein 97.4 0.25 5.4E-06 58.3 30.0 225 161-400 327-562 (980)
13 PF05667 DUF812: Protein of un 97.4 0.14 3.1E-06 58.4 27.6 191 166-386 327-541 (594)
14 COG1196 Smc Chromosome segrega 97.4 0.32 6.9E-06 59.0 32.0 63 167-235 674-736 (1163)
15 KOG0977 Nuclear envelope prote 97.4 0.025 5.5E-07 63.6 21.3 221 166-401 112-383 (546)
16 KOG0971 Microtubule-associated 97.3 0.12 2.5E-06 61.1 25.9 104 227-330 373-493 (1243)
17 KOG4673 Transcription factor T 97.3 0.065 1.4E-06 61.7 23.2 141 199-340 472-629 (961)
18 TIGR00606 rad50 rad50. This fa 97.2 0.11 2.4E-06 63.5 26.4 65 173-241 798-862 (1311)
19 PF09726 Macoilin: Transmembra 97.2 0.1 2.3E-06 60.4 24.8 29 165-193 423-451 (697)
20 KOG0161 Myosin class II heavy 97.1 0.2 4.4E-06 63.5 27.2 162 165-335 906-1074(1930)
21 PRK02224 chromosome segregatio 97.1 0.33 7.2E-06 56.3 27.3 20 309-328 606-625 (880)
22 PF10174 Cast: RIM-binding pro 97.0 0.21 4.5E-06 58.7 24.8 168 202-373 344-541 (775)
23 PF07888 CALCOCO1: Calcium bin 97.0 0.51 1.1E-05 53.5 26.9 9 424-432 439-447 (546)
24 KOG0161 Myosin class II heavy 97.0 0.34 7.4E-06 61.6 27.6 171 219-402 1003-1178(1930)
25 PF04849 HAP1_N: HAP1 N-termin 96.9 0.037 8E-07 58.5 16.3 101 166-267 103-227 (306)
26 PF00038 Filament: Intermediat 96.8 0.71 1.5E-05 47.2 27.5 207 162-373 49-289 (312)
27 KOG0250 DNA repair protein RAD 96.8 0.6 1.3E-05 56.3 26.7 17 356-372 446-462 (1074)
28 PRK01156 chromosome segregatio 96.8 1.7 3.7E-05 50.9 29.9 14 167-180 483-496 (895)
29 PLN03188 kinesin-12 family pro 96.8 0.37 7.9E-06 58.9 24.7 75 308-382 1172-1247(1320)
30 KOG0982 Centrosomal protein Nu 96.7 0.35 7.5E-06 53.5 21.8 184 164-376 219-433 (502)
31 KOG4643 Uncharacterized coiled 96.7 0.11 2.5E-06 61.7 19.2 167 150-330 160-336 (1195)
32 TIGR00606 rad50 rad50. This fa 96.6 0.8 1.7E-05 56.3 26.5 39 199-237 879-917 (1311)
33 PF07888 CALCOCO1: Calcium bin 96.6 0.99 2.2E-05 51.3 25.1 129 201-339 171-299 (546)
34 COG1579 Zn-ribbon protein, pos 96.6 0.62 1.3E-05 48.0 21.6 111 205-337 28-138 (239)
35 KOG0977 Nuclear envelope prote 96.5 0.22 4.9E-06 56.3 19.6 164 214-387 48-231 (546)
36 KOG0250 DNA repair protein RAD 96.4 0.53 1.1E-05 56.7 22.9 156 161-316 655-839 (1074)
37 COG1579 Zn-ribbon protein, pos 96.4 0.52 1.1E-05 48.5 20.0 153 198-374 28-185 (239)
38 PRK09039 hypothetical protein; 96.3 0.24 5.1E-06 52.8 17.9 100 216-335 82-184 (343)
39 PF12718 Tropomyosin_1: Tropom 96.3 0.34 7.3E-06 45.9 17.0 118 201-339 21-138 (143)
40 PRK01156 chromosome segregatio 96.2 3.7 8E-05 48.3 28.3 84 166-251 475-558 (895)
41 COG4942 Membrane-bound metallo 96.2 2.6 5.6E-05 46.7 25.2 79 166-250 44-123 (420)
42 PF05557 MAD: Mitotic checkpoi 96.2 0.0013 2.7E-08 75.2 0.0 229 166-397 191-429 (722)
43 KOG1937 Uncharacterized conser 96.1 3.1 6.7E-05 46.6 25.3 158 201-369 345-518 (521)
44 PRK04863 mukB cell division pr 96.1 6.3 0.00014 49.8 31.1 169 169-340 309-480 (1486)
45 PRK04863 mukB cell division pr 96.1 3.4 7.3E-05 52.1 28.1 183 210-402 385-620 (1486)
46 PF05557 MAD: Mitotic checkpoi 96.0 0.028 6E-07 64.5 9.7 208 166-375 363-588 (722)
47 KOG0978 E3 ubiquitin ligase in 96.0 4.5 9.7E-05 47.4 27.4 208 166-375 399-623 (698)
48 PF07926 TPR_MLP1_2: TPR/MLP1/ 96.0 0.98 2.1E-05 41.8 17.7 85 233-334 46-130 (132)
49 PRK11637 AmiB activator; Provi 96.0 3.1 6.8E-05 45.1 27.4 25 165-189 45-69 (428)
50 PF09789 DUF2353: Uncharacteri 96.0 1.8 3.9E-05 46.4 21.9 122 165-286 21-176 (319)
51 PF13851 GAS: Growth-arrest sp 96.0 2 4.3E-05 42.8 21.9 97 166-286 26-122 (201)
52 PF08317 Spc7: Spc7 kinetochor 95.9 0.71 1.5E-05 48.6 18.8 43 167-211 75-125 (325)
53 PF12325 TMF_TATA_bd: TATA ele 95.9 0.37 8E-06 44.8 14.7 78 201-278 16-93 (120)
54 PF15254 CCDC14: Coiled-coil d 95.9 0.84 1.8E-05 53.6 20.2 68 213-283 418-485 (861)
55 PF15070 GOLGA2L5: Putative go 95.8 4 8.7E-05 47.2 25.6 91 156-249 76-170 (617)
56 KOG0612 Rho-associated, coiled 95.8 2.8 6.1E-05 51.5 24.8 76 307-382 579-665 (1317)
57 PF14662 CCDC155: Coiled-coil 95.8 2.4 5.3E-05 42.6 22.7 161 166-332 21-188 (193)
58 PF05622 HOOK: HOOK protein; 95.7 0.0027 5.8E-08 72.6 0.0 224 167-400 239-507 (713)
59 PF12128 DUF3584: Protein of u 95.7 2.8 6.1E-05 51.4 24.9 198 162-391 602-806 (1201)
60 KOG0982 Centrosomal protein Nu 95.6 1.2 2.6E-05 49.4 19.2 155 166-331 249-432 (502)
61 PRK04778 septation ring format 95.5 5.8 0.00012 44.9 27.7 48 348-395 478-530 (569)
62 smart00787 Spc7 Spc7 kinetocho 95.5 0.56 1.2E-05 49.7 16.1 115 168-285 166-285 (312)
63 PRK09039 hypothetical protein; 95.5 0.74 1.6E-05 49.1 17.1 98 162-262 76-174 (343)
64 PF00261 Tropomyosin: Tropomyo 95.5 3.2 7E-05 41.8 22.8 24 169-192 3-26 (237)
65 PHA02562 46 endonuclease subun 95.4 5.4 0.00012 43.9 26.5 30 212-241 217-246 (562)
66 PF13851 GAS: Growth-arrest sp 95.3 3.4 7.3E-05 41.2 21.5 121 189-337 13-135 (201)
67 PF06818 Fez1: Fez1; InterPro 95.3 3.1 6.8E-05 42.1 19.7 76 166-241 30-106 (202)
68 COG4942 Membrane-bound metallo 95.3 4.2 9E-05 45.2 22.2 179 201-398 45-241 (420)
69 KOG0612 Rho-associated, coiled 95.3 11 0.00024 46.7 28.6 39 248-286 593-638 (1317)
70 KOG4674 Uncharacterized conser 95.3 8.2 0.00018 49.5 27.1 84 203-286 1259-1361(1822)
71 KOG0963 Transcription factor/C 95.2 8.2 0.00018 44.7 25.4 135 176-317 120-264 (629)
72 KOG0971 Microtubule-associated 95.1 11 0.00023 45.7 29.4 44 172-215 229-279 (1243)
73 PF00261 Tropomyosin: Tropomyo 95.1 3.5 7.6E-05 41.5 19.6 39 301-339 154-192 (237)
74 KOG0963 Transcription factor/C 95.0 8.1 0.00017 44.8 24.1 185 203-403 184-398 (629)
75 KOG0996 Structural maintenance 95.0 6.3 0.00014 48.5 24.1 26 348-373 544-569 (1293)
76 TIGR03007 pepcterm_ChnLen poly 95.0 2.8 6.2E-05 45.7 20.1 70 306-375 314-384 (498)
77 PF07111 HCR: Alpha helical co 95.0 4.2 9.1E-05 47.6 21.8 110 211-337 97-211 (739)
78 smart00787 Spc7 Spc7 kinetocho 94.9 2.7 5.9E-05 44.6 19.1 42 296-337 219-260 (312)
79 PF05622 HOOK: HOOK protein; 94.9 0.007 1.5E-07 69.3 0.0 170 217-394 241-425 (713)
80 PF10473 CENP-F_leu_zip: Leuci 94.9 3.7 8.1E-05 39.3 19.3 111 204-327 6-119 (140)
81 PF15070 GOLGA2L5: Putative go 94.9 9.9 0.00021 44.1 24.9 50 220-269 85-138 (617)
82 KOG0976 Rho/Rac1-interacting s 94.9 9 0.00019 45.8 24.1 58 161-218 93-165 (1265)
83 PF09726 Macoilin: Transmembra 94.9 3.7 8E-05 48.1 21.4 112 218-333 456-576 (697)
84 PF11365 DUF3166: Protein of u 94.8 0.095 2.1E-06 47.2 6.9 92 203-327 3-94 (96)
85 PF05701 WEMBL: Weak chloropla 94.8 8.8 0.00019 43.2 25.7 44 220-263 216-259 (522)
86 PF05667 DUF812: Protein of un 94.8 10 0.00022 43.8 25.5 60 162-221 330-390 (594)
87 PF05483 SCP-1: Synaptonemal c 94.8 11 0.00024 44.3 26.9 169 168-337 423-628 (786)
88 TIGR01005 eps_transp_fam exopo 94.8 5.6 0.00012 45.9 22.6 26 169-194 196-221 (754)
89 PF09789 DUF2353: Uncharacteri 94.7 6 0.00013 42.6 20.9 159 205-384 13-195 (319)
90 KOG0979 Structural maintenance 94.7 4.5 9.7E-05 49.0 21.7 177 115-327 122-301 (1072)
91 KOG0933 Structural maintenance 94.7 15 0.00032 45.0 27.3 81 145-225 648-732 (1174)
92 TIGR01005 eps_transp_fam exopo 94.7 4 8.6E-05 47.2 21.0 175 202-376 202-406 (754)
93 PF06548 Kinesin-related: Kine 94.5 10 0.00022 42.7 26.4 244 112-383 221-478 (488)
94 KOG4673 Transcription factor T 94.4 14 0.0003 43.6 26.8 77 154-230 333-438 (961)
95 PF15619 Lebercilin: Ciliary p 94.3 6.2 0.00013 39.4 20.5 20 168-187 13-32 (194)
96 KOG4593 Mitotic checkpoint pro 94.3 14 0.00031 43.4 24.7 205 168-377 106-346 (716)
97 KOG0995 Centromere-associated 94.3 10 0.00023 43.6 22.5 83 203-285 215-301 (581)
98 PF06785 UPF0242: Uncharacteri 94.3 2.6 5.7E-05 45.7 17.0 115 170-287 85-200 (401)
99 KOG1029 Endocytic adaptor prot 94.2 7.7 0.00017 46.2 21.7 35 295-329 556-590 (1118)
100 TIGR03007 pepcterm_ChnLen poly 94.2 6.6 0.00014 42.9 20.6 26 169-194 163-188 (498)
101 KOG4643 Uncharacterized coiled 94.2 16 0.00035 44.6 24.7 77 166-242 256-342 (1195)
102 COG2433 Uncharacterized conser 94.1 0.75 1.6E-05 52.8 13.4 92 211-316 418-509 (652)
103 KOG0249 LAR-interacting protei 94.0 3.7 8.1E-05 48.2 18.5 83 166-255 104-186 (916)
104 KOG3091 Nuclear pore complex, 93.9 2.1 4.5E-05 48.2 16.0 110 203-327 336-446 (508)
105 PF08614 ATG16: Autophagy prot 93.8 0.58 1.3E-05 45.7 10.4 50 303-368 131-180 (194)
106 KOG0239 Kinesin (KAR3 subfamil 93.7 4.3 9.4E-05 47.3 18.7 114 197-338 178-291 (670)
107 COG0419 SbcC ATPase involved i 93.6 20 0.00044 42.8 28.4 77 172-248 230-307 (908)
108 KOG0243 Kinesin-like protein [ 93.5 22 0.00048 43.6 24.4 153 164-337 408-560 (1041)
109 KOG1029 Endocytic adaptor prot 93.4 22 0.00048 42.6 24.5 162 167-337 327-521 (1118)
110 TIGR01000 bacteriocin_acc bact 93.3 9.5 0.00021 41.7 19.7 32 161-192 91-122 (457)
111 PF08317 Spc7: Spc7 kinetochor 93.2 13 0.00029 39.3 26.7 38 295-332 209-246 (325)
112 TIGR01843 type_I_hlyD type I s 93.2 11 0.00024 39.4 19.3 27 165-191 79-105 (423)
113 PF10174 Cast: RIM-binding pro 93.2 24 0.00052 42.2 28.2 46 295-340 378-423 (775)
114 PF09730 BicD: Microtubule-ass 93.1 23 0.00051 41.9 23.6 123 192-335 18-147 (717)
115 COG5185 HEC1 Protein involved 93.0 20 0.00043 40.9 24.1 188 203-395 332-577 (622)
116 KOG0946 ER-Golgi vesicle-tethe 93.0 16 0.00034 43.8 21.6 46 193-238 662-708 (970)
117 PF10168 Nup88: Nuclear pore c 92.9 6.6 0.00014 46.2 18.7 88 168-270 537-624 (717)
118 KOG0946 ER-Golgi vesicle-tethe 92.8 9.8 0.00021 45.5 19.6 78 295-374 820-899 (970)
119 COG0419 SbcC ATPase involved i 92.6 28 0.0006 41.6 28.6 20 354-373 720-739 (908)
120 PF09730 BicD: Microtubule-ass 92.6 11 0.00024 44.5 19.8 81 163-246 72-152 (717)
121 PF12718 Tropomyosin_1: Tropom 92.6 9.8 0.00021 36.2 18.3 63 303-374 81-143 (143)
122 KOG4674 Uncharacterized conser 92.6 42 0.00092 43.5 28.6 28 364-391 1480-1507(1822)
123 PF05701 WEMBL: Weak chloropla 92.3 23 0.00051 39.9 27.0 87 193-279 227-331 (522)
124 PF15619 Lebercilin: Ciliary p 92.2 14 0.00029 37.0 24.3 31 203-233 14-44 (194)
125 PF12128 DUF3584: Protein of u 92.2 37 0.00081 42.0 28.0 61 203-263 308-369 (1201)
126 KOG0978 E3 ubiquitin ligase in 92.1 30 0.00066 40.9 24.1 169 168-339 438-624 (698)
127 PRK11281 hypothetical protein; 92.1 35 0.00075 42.4 23.9 29 166-194 79-107 (1113)
128 KOG1937 Uncharacterized conser 92.0 26 0.00056 39.7 22.5 41 166-206 230-270 (521)
129 TIGR02680 conserved hypothetic 91.9 43 0.00094 42.1 27.1 10 484-493 1125-1134(1353)
130 PF10211 Ax_dynein_light: Axon 91.9 7.2 0.00016 38.6 15.1 68 304-372 122-189 (189)
131 KOG1899 LAR transmembrane tyro 91.9 31 0.00068 40.5 22.9 38 220-260 109-146 (861)
132 PF10226 DUF2216: Uncharacteri 91.7 12 0.00026 37.8 16.4 93 203-322 43-135 (195)
133 PF13870 DUF4201: Domain of un 91.7 13 0.00028 35.7 21.6 156 165-324 4-174 (177)
134 PF04156 IncA: IncA protein; 91.6 9.6 0.00021 36.5 15.3 29 304-332 153-181 (191)
135 KOG1853 LIS1-interacting prote 91.6 21 0.00045 37.9 21.1 124 173-339 19-142 (333)
136 COG2433 Uncharacterized conser 91.5 3.4 7.3E-05 47.7 13.8 85 160-250 415-502 (652)
137 PF15035 Rootletin: Ciliary ro 91.4 16 0.00035 36.2 16.9 104 218-324 60-163 (182)
138 PRK04778 septation ring format 91.3 30 0.00066 39.3 26.1 114 202-324 257-370 (569)
139 PF10186 Atg14: UV radiation r 91.2 16 0.00036 36.5 17.1 27 217-243 22-48 (302)
140 TIGR01000 bacteriocin_acc bact 91.2 15 0.00032 40.3 18.1 14 14-27 20-34 (457)
141 PF07926 TPR_MLP1_2: TPR/MLP1/ 91.0 13 0.00028 34.4 16.8 69 304-372 61-131 (132)
142 TIGR03017 EpsF chain length de 90.8 26 0.00057 37.7 23.4 32 349-380 345-376 (444)
143 PRK10361 DNA recombination pro 90.8 34 0.00073 38.8 21.9 31 304-334 167-197 (475)
144 KOG0933 Structural maintenance 90.8 49 0.0011 40.8 28.5 149 166-323 683-836 (1174)
145 PF06818 Fez1: Fez1; InterPro 90.5 22 0.00048 36.2 18.0 165 213-387 8-180 (202)
146 PLN02939 transferase, transfer 90.1 24 0.00052 43.2 19.6 156 165-326 224-400 (977)
147 COG5185 HEC1 Protein involved 90.1 36 0.00078 38.9 19.6 56 205-260 253-309 (622)
148 PRK12704 phosphodiesterase; Pr 89.8 41 0.0009 38.2 20.4 17 563-580 453-469 (520)
149 PF04849 HAP1_N: HAP1 N-termin 89.7 33 0.00071 37.0 19.7 80 163-242 156-240 (306)
150 PF15254 CCDC14: Coiled-coil d 89.4 25 0.00054 42.1 18.5 150 165-330 392-557 (861)
151 PF01486 K-box: K-box region; 89.4 1.1 2.4E-05 39.5 6.3 74 162-239 14-99 (100)
152 PF05911 DUF869: Plant protein 89.4 56 0.0012 39.2 22.3 161 211-373 585-760 (769)
153 PF08614 ATG16: Autophagy prot 89.2 4.7 0.0001 39.5 11.1 19 314-332 163-181 (194)
154 PF04111 APG6: Autophagy prote 89.2 6 0.00013 42.0 12.6 29 221-249 8-36 (314)
155 PF10186 Atg14: UV radiation r 89.2 26 0.00056 35.1 17.7 27 168-194 21-47 (302)
156 TIGR00634 recN DNA repair prot 89.2 45 0.00097 37.8 20.7 80 304-383 303-383 (563)
157 KOG0999 Microtubule-associated 89.1 51 0.0011 38.4 23.9 173 164-339 146-348 (772)
158 TIGR03185 DNA_S_dndD DNA sulfu 89.0 50 0.0011 38.1 27.0 28 308-335 390-417 (650)
159 KOG4001 Axonemal dynein light 88.8 1.6 3.4E-05 44.7 7.6 65 307-372 190-254 (259)
160 PF00038 Filament: Intermediat 88.8 31 0.00067 35.5 27.4 72 170-241 14-87 (312)
161 PF00769 ERM: Ezrin/radixin/mo 88.7 19 0.00042 36.9 15.5 71 304-383 56-126 (246)
162 TIGR03319 YmdA_YtgF conserved 88.6 40 0.00086 38.3 19.2 16 564-580 448-463 (514)
163 TIGR00634 recN DNA repair prot 88.5 31 0.00067 39.0 18.3 96 244-339 271-376 (563)
164 TIGR02680 conserved hypothetic 88.5 80 0.0017 39.9 28.8 30 167-196 230-259 (1353)
165 PF04156 IncA: IncA protein; 88.4 24 0.00053 33.8 16.0 41 202-242 82-122 (191)
166 PF10498 IFT57: Intra-flagella 88.2 17 0.00037 39.6 15.4 147 163-314 194-347 (359)
167 PF04111 APG6: Autophagy prote 88.1 10 0.00022 40.3 13.5 35 303-337 100-134 (314)
168 PRK10929 putative mechanosensi 87.9 82 0.0018 39.3 23.0 52 320-373 262-313 (1109)
169 PRK10884 SH3 domain-containing 87.7 6.1 0.00013 39.8 11.0 21 220-240 91-111 (206)
170 KOG0995 Centromere-associated 87.7 61 0.0013 37.6 30.3 91 300-395 437-536 (581)
171 PF15397 DUF4618: Domain of un 87.6 41 0.00088 35.4 22.1 135 239-386 81-232 (258)
172 KOG0994 Extracellular matrix g 87.5 20 0.00043 44.6 16.5 25 260-284 1643-1667(1758)
173 PF14662 CCDC155: Coiled-coil 87.4 35 0.00077 34.6 24.1 24 238-261 59-82 (193)
174 PF06632 XRCC4: DNA double-str 87.4 9.1 0.0002 41.4 12.7 61 220-286 149-209 (342)
175 TIGR01843 type_I_hlyD type I s 87.2 42 0.00091 35.2 22.7 26 168-193 75-100 (423)
176 KOG4360 Uncharacterized coiled 87.1 19 0.00041 41.3 15.2 102 167-269 104-228 (596)
177 PF13514 AAA_27: AAA domain 86.9 87 0.0019 38.5 27.4 37 305-341 892-928 (1111)
178 PF01576 Myosin_tail_1: Myosin 86.7 0.2 4.4E-06 59.2 0.0 178 160-337 356-567 (859)
179 PF11559 ADIP: Afadin- and alp 86.4 29 0.00062 32.5 14.1 48 220-270 64-111 (151)
180 KOG0249 LAR-interacting protei 86.4 31 0.00066 41.1 16.8 41 203-243 93-133 (916)
181 PF09755 DUF2046: Uncharacteri 86.1 55 0.0012 35.4 22.1 150 203-388 29-184 (310)
182 PF00769 ERM: Ezrin/radixin/mo 85.7 46 0.001 34.2 17.0 29 307-335 87-115 (246)
183 PF07798 DUF1640: Protein of u 85.6 19 0.00042 34.9 12.9 38 199-236 56-94 (177)
184 PRK10884 SH3 domain-containing 85.4 16 0.00034 36.9 12.5 15 203-217 95-109 (206)
185 PRK09343 prefoldin subunit bet 85.3 27 0.00059 32.2 13.1 108 206-330 5-113 (121)
186 PRK10869 recombination and rep 85.2 75 0.0016 36.3 20.8 46 295-340 327-372 (553)
187 KOG0999 Microtubule-associated 84.9 86 0.0019 36.7 25.1 169 203-390 52-227 (772)
188 COG0497 RecN ATPase involved i 84.4 88 0.0019 36.3 21.7 95 304-407 299-394 (557)
189 PF07106 TBPIP: Tat binding pr 84.2 8.6 0.00019 36.7 9.7 84 304-394 74-163 (169)
190 PF06005 DUF904: Protein of un 83.7 15 0.00033 31.6 9.9 60 203-262 6-69 (72)
191 PF13514 AAA_27: AAA domain 83.6 1.2E+02 0.0026 37.3 23.6 39 300-338 344-382 (1111)
192 KOG0018 Structural maintenance 83.4 1E+02 0.0022 38.4 19.7 33 352-384 806-838 (1141)
193 KOG0976 Rho/Rac1-interacting s 83.2 1.2E+02 0.0026 37.0 26.9 70 173-242 47-133 (1265)
194 PF04012 PspA_IM30: PspA/IM30 82.6 52 0.0011 32.4 18.4 36 304-339 114-149 (221)
195 KOG0979 Structural maintenance 82.2 1.4E+02 0.003 37.0 23.8 78 166-249 635-712 (1072)
196 PF13870 DUF4201: Domain of un 82.1 50 0.0011 31.8 20.7 155 213-374 4-173 (177)
197 PF04859 DUF641: Plant protein 82.0 2.1 4.6E-05 40.6 4.6 39 199-237 92-130 (131)
198 PF15294 Leu_zip: Leucine zipp 81.0 63 0.0014 34.4 15.3 101 217-324 127-237 (278)
199 KOG0964 Structural maintenance 80.9 1.6E+02 0.0034 36.7 23.0 79 246-331 300-378 (1200)
200 COG3883 Uncharacterized protei 80.7 82 0.0018 33.4 19.7 55 209-266 53-107 (265)
201 PF09787 Golgin_A5: Golgin sub 80.6 1.1E+02 0.0023 34.7 22.4 61 310-375 275-335 (511)
202 TIGR02338 gimC_beta prefoldin, 80.3 37 0.0008 30.6 11.7 37 215-251 10-46 (110)
203 PF01576 Myosin_tail_1: Myosin 79.8 0.57 1.2E-05 55.5 0.0 37 302-338 419-455 (859)
204 KOG0018 Structural maintenance 79.7 1.7E+02 0.0037 36.5 23.4 37 301-337 401-437 (1141)
205 KOG1962 B-cell receptor-associ 79.6 26 0.00055 36.1 11.5 20 352-371 192-211 (216)
206 PF07106 TBPIP: Tat binding pr 79.5 18 0.00038 34.6 9.9 64 161-242 73-136 (169)
207 PF09744 Jnk-SapK_ap_N: JNK_SA 79.3 63 0.0014 31.6 13.6 23 249-271 85-107 (158)
208 TIGR01010 BexC_CtrB_KpsE polys 79.2 91 0.002 33.0 16.8 34 199-232 168-201 (362)
209 COG1340 Uncharacterized archae 79.2 98 0.0021 33.3 25.7 30 166-195 47-76 (294)
210 cd00632 Prefoldin_beta Prefold 78.9 34 0.00073 30.5 10.9 37 215-251 6-42 (105)
211 PF06005 DUF904: Protein of un 78.4 28 0.00061 29.9 9.7 20 309-328 39-58 (72)
212 PF11559 ADIP: Afadin- and alp 78.2 60 0.0013 30.4 15.8 56 212-270 63-118 (151)
213 PRK15422 septal ring assembly 78.1 21 0.00046 31.6 9.0 47 203-249 6-52 (79)
214 KOG4787 Uncharacterized conser 77.9 1.5E+02 0.0034 35.0 18.1 24 166-189 331-354 (852)
215 PRK12704 phosphodiesterase; Pr 77.8 1.4E+02 0.0029 34.2 20.7 14 358-371 167-180 (520)
216 PF15066 CAGE1: Cancer-associa 77.5 1.4E+02 0.003 34.3 23.7 74 201-278 345-432 (527)
217 KOG0804 Cytoplasmic Zn-finger 77.4 85 0.0018 35.7 15.4 37 243-279 407-443 (493)
218 PF05266 DUF724: Protein of un 77.2 83 0.0018 31.5 15.0 104 166-279 68-174 (190)
219 KOG0964 Structural maintenance 77.1 2E+02 0.0044 35.8 25.5 45 294-338 424-468 (1200)
220 TIGR03017 EpsF chain length de 77.0 1.1E+02 0.0025 32.9 21.1 61 201-261 171-237 (444)
221 PF05278 PEARLI-4: Arabidopsis 76.8 85 0.0018 33.4 14.6 29 236-264 149-177 (269)
222 PRK10361 DNA recombination pro 76.7 1.4E+02 0.0031 34.0 23.9 42 358-399 145-190 (475)
223 PF05700 BCAS2: Breast carcino 76.3 91 0.002 31.5 16.1 66 248-323 152-217 (221)
224 KOG1003 Actin filament-coating 76.1 98 0.0021 31.8 18.7 29 214-242 3-31 (205)
225 PRK00106 hypothetical protein; 76.1 1.6E+02 0.0034 34.1 21.4 11 563-573 468-478 (535)
226 PF12325 TMF_TATA_bd: TATA ele 76.1 70 0.0015 30.0 15.1 68 215-286 16-83 (120)
227 KOG0804 Cytoplasmic Zn-finger 76.0 1E+02 0.0023 35.1 15.7 21 317-337 436-456 (493)
228 PRK10698 phage shock protein P 75.8 96 0.0021 31.5 16.5 39 301-339 112-150 (222)
229 KOG1899 LAR transmembrane tyro 75.5 1.5E+02 0.0032 35.3 17.1 43 273-325 183-231 (861)
230 PF05911 DUF869: Plant protein 75.5 80 0.0017 37.9 15.6 111 203-316 591-715 (769)
231 PF03962 Mnd1: Mnd1 family; I 75.2 47 0.001 32.9 11.8 41 242-282 106-146 (188)
232 PRK11281 hypothetical protein; 75.1 95 0.0021 38.8 16.6 31 307-337 197-227 (1113)
233 PF09787 Golgin_A5: Golgin sub 75.1 1.5E+02 0.0033 33.5 25.3 15 165-179 121-135 (511)
234 PRK11519 tyrosine kinase; Prov 75.0 1E+02 0.0023 36.1 16.3 32 201-232 267-298 (719)
235 KOG0239 Kinesin (KAR3 subfamil 74.9 1.8E+02 0.0039 34.5 18.1 35 373-411 374-411 (670)
236 PF05483 SCP-1: Synaptonemal c 74.1 2E+02 0.0044 34.5 26.3 117 205-341 517-640 (786)
237 PF07407 Seadorna_VP6: Seadorn 74.0 3.7 8.1E-05 44.5 4.1 37 346-382 32-69 (420)
238 PRK03947 prefoldin subunit alp 74.0 75 0.0016 29.4 13.5 42 218-259 9-50 (140)
239 KOG0962 DNA repair protein RAD 73.9 2.6E+02 0.0057 35.7 20.0 100 169-271 187-286 (1294)
240 PRK09841 cryptic autophosphory 73.7 92 0.002 36.5 15.5 41 297-337 358-398 (726)
241 KOG4360 Uncharacterized coiled 73.5 1.9E+02 0.004 33.7 17.4 88 168-259 160-253 (596)
242 PF14988 DUF4515: Domain of un 73.3 1.1E+02 0.0024 31.0 25.7 95 164-263 15-109 (206)
243 PF15290 Syntaphilin: Golgi-lo 72.5 96 0.0021 33.4 13.7 13 227-239 106-118 (305)
244 COG4026 Uncharacterized protei 72.2 58 0.0013 34.2 11.8 28 301-328 155-182 (290)
245 TIGR02132 phaR_Bmeg polyhydrox 72.1 74 0.0016 32.2 12.1 101 166-280 71-173 (189)
246 KOG0994 Extracellular matrix g 71.9 2.9E+02 0.0063 35.3 27.2 166 224-394 1544-1728(1758)
247 PF05010 TACC: Transforming ac 71.5 1.2E+02 0.0027 30.9 22.3 50 199-248 7-56 (207)
248 PRK10246 exonuclease subunit S 70.9 2.7E+02 0.0058 34.4 28.0 29 166-194 529-557 (1047)
249 KOG4807 F-actin binding protei 70.3 2E+02 0.0043 32.7 19.3 39 361-399 475-537 (593)
250 KOG0288 WD40 repeat protein Ti 70.2 2E+02 0.0043 32.7 16.7 65 172-242 4-68 (459)
251 KOG4005 Transcription factor X 69.7 63 0.0014 34.1 11.5 58 260-328 59-116 (292)
252 PF06008 Laminin_I: Laminin Do 69.7 1.4E+02 0.003 30.6 18.8 35 303-339 128-162 (264)
253 COG3074 Uncharacterized protei 69.2 71 0.0015 28.1 9.9 46 204-249 7-52 (79)
254 TIGR03545 conserved hypothetic 69.2 36 0.00079 39.1 10.7 64 215-278 191-258 (555)
255 PF14197 Cep57_CLD_2: Centroso 69.1 59 0.0013 27.8 9.4 51 215-268 12-62 (69)
256 PF05266 DUF724: Protein of un 68.4 1.4E+02 0.0029 30.1 15.4 26 302-327 131-156 (190)
257 PF07058 Myosin_HC-like: Myosi 68.1 47 0.001 36.1 10.5 76 252-341 6-91 (351)
258 KOG4403 Cell surface glycoprot 67.9 1.4E+02 0.0031 34.0 14.4 43 294-336 334-377 (575)
259 PF10168 Nup88: Nuclear pore c 67.8 2.7E+02 0.0058 33.3 18.3 58 176-239 560-617 (717)
260 PF10267 Tmemb_cc2: Predicted 67.7 2.1E+02 0.0045 32.0 16.4 70 217-286 221-291 (395)
261 PF07227 DUF1423: Protein of u 67.2 2E+02 0.0043 32.8 15.4 48 201-248 350-398 (446)
262 KOG2398 Predicted proline-seri 67.0 2.6E+02 0.0057 32.9 17.9 30 255-284 71-100 (611)
263 COG4026 Uncharacterized protei 66.6 40 0.00086 35.3 9.3 72 307-381 133-204 (290)
264 PF14915 CCDC144C: CCDC144C pr 66.6 2E+02 0.0043 31.3 23.9 166 249-433 122-289 (305)
265 PF06156 DUF972: Protein of un 66.6 25 0.00055 32.2 7.2 48 202-249 9-56 (107)
266 KOG4593 Mitotic checkpoint pro 66.0 3E+02 0.0064 33.1 28.4 37 150-186 38-74 (716)
267 PF12761 End3: Actin cytoskele 66.0 58 0.0012 33.1 10.2 23 264-286 160-182 (195)
268 PTZ00446 vacuolar sorting prot 66.0 1.6E+02 0.0034 29.9 16.8 26 262-287 79-104 (191)
269 COG4372 Uncharacterized protei 65.9 2.4E+02 0.0052 32.0 27.2 144 223-375 138-281 (499)
270 PF15397 DUF4618: Domain of un 65.7 1.9E+02 0.004 30.7 20.4 34 351-388 191-224 (258)
271 PF14197 Cep57_CLD_2: Centroso 65.5 73 0.0016 27.2 9.3 33 201-233 5-37 (69)
272 PF15290 Syntaphilin: Golgi-lo 65.5 46 0.001 35.7 9.7 53 211-284 85-137 (305)
273 COG0497 RecN ATPase involved i 65.1 1.9E+02 0.0042 33.6 15.3 46 295-340 328-373 (557)
274 PF08826 DMPK_coil: DMPK coile 64.9 62 0.0013 27.3 8.6 36 234-269 6-41 (61)
275 PF06632 XRCC4: DNA double-str 64.9 39 0.00084 36.8 9.4 26 241-266 182-207 (342)
276 COG1842 PspA Phage shock prote 64.4 1.8E+02 0.0039 30.0 14.8 122 189-337 27-148 (225)
277 TIGR03185 DNA_S_dndD DNA sulfu 64.4 2.8E+02 0.006 32.2 27.2 42 296-337 422-463 (650)
278 PF15035 Rootletin: Ciliary ro 64.2 11 0.00023 37.4 4.7 35 351-385 86-120 (182)
279 TIGR03545 conserved hypothetic 63.8 1.7E+02 0.0037 33.8 14.6 41 270-313 190-230 (555)
280 KOG2129 Uncharacterized conser 63.7 2.7E+02 0.0058 31.8 18.7 139 172-323 134-299 (552)
281 TIGR00998 8a0101 efflux pump m 63.7 1.8E+02 0.0039 29.9 14.8 87 164-263 77-163 (334)
282 PF11932 DUF3450: Protein of u 63.6 1.8E+02 0.0038 29.6 17.9 132 168-324 22-161 (251)
283 PRK10929 putative mechanosensi 63.5 3.9E+02 0.0086 33.7 24.8 174 162-335 104-298 (1109)
284 PF09755 DUF2046: Uncharacteri 63.4 2.3E+02 0.0049 30.9 26.2 204 170-379 23-255 (310)
285 TIGR03319 YmdA_YtgF conserved 63.4 2.7E+02 0.0059 31.8 20.6 25 295-319 104-128 (514)
286 PF07111 HCR: Alpha helical co 63.3 3.3E+02 0.0072 32.8 24.6 98 305-402 422-535 (739)
287 KOG4196 bZIP transcription fac 62.7 53 0.0011 31.7 8.7 76 253-335 32-107 (135)
288 PF09744 Jnk-SapK_ap_N: JNK_SA 62.4 1.5E+02 0.0033 29.0 12.0 104 164-282 47-153 (158)
289 PF10473 CENP-F_leu_zip: Leuci 62.3 1.5E+02 0.0033 28.6 15.2 72 166-243 9-80 (140)
290 PF10226 DUF2216: Uncharacteri 62.1 1.9E+02 0.0041 29.6 16.4 30 227-256 43-72 (195)
291 smart00338 BRLZ basic region l 62.0 66 0.0014 26.2 8.2 30 299-328 23-52 (65)
292 PF09731 Mitofilin: Mitochondr 61.4 2.8E+02 0.006 31.5 15.6 130 248-383 253-383 (582)
293 PF05761 5_nucleotid: 5' nucle 61.3 16 0.00036 40.7 6.0 68 198-266 319-389 (448)
294 PF10212 TTKRSYEDQ: Predicted 61.3 1.6E+02 0.0035 34.1 13.6 45 242-286 458-502 (518)
295 PRK13729 conjugal transfer pil 61.2 16 0.00035 41.3 5.9 20 219-238 101-120 (475)
296 TIGR03752 conj_TIGR03752 integ 61.2 50 0.0011 37.5 9.6 46 295-340 59-104 (472)
297 TIGR02231 conserved hypothetic 61.1 1.1E+02 0.0023 34.4 12.2 20 305-324 148-167 (525)
298 COG4913 Uncharacterized protei 61.0 3.9E+02 0.0084 32.8 22.2 118 148-268 599-720 (1104)
299 KOG0980 Actin-binding protein 60.7 4.1E+02 0.0088 32.9 26.4 121 167-288 351-483 (980)
300 PF10212 TTKRSYEDQ: Predicted 60.7 1.2E+02 0.0027 34.9 12.6 37 361-397 442-478 (518)
301 PF08172 CASP_C: CASP C termin 60.4 85 0.0018 32.7 10.5 30 206-235 4-33 (248)
302 PF05700 BCAS2: Breast carcino 60.0 2E+02 0.0043 29.1 18.6 107 164-286 101-211 (221)
303 TIGR02449 conserved hypothetic 60.0 72 0.0016 27.3 8.2 50 214-263 6-59 (65)
304 KOG0993 Rab5 GTPase effector R 59.8 2.7E+02 0.0059 31.7 14.6 151 224-384 23-178 (542)
305 COG3883 Uncharacterized protei 59.4 2.5E+02 0.0053 30.0 20.8 74 196-272 33-106 (265)
306 PF06160 EzrA: Septation ring 59.0 3.3E+02 0.0071 31.3 22.7 16 355-370 505-520 (560)
307 PF05529 Bap31: B-cell recepto 59.0 78 0.0017 30.8 9.6 19 305-323 171-189 (192)
308 PF11932 DUF3450: Protein of u 58.8 2.1E+02 0.0046 29.0 19.0 56 205-260 60-116 (251)
309 TIGR02449 conserved hypothetic 58.4 75 0.0016 27.2 8.0 40 301-340 13-52 (65)
310 PF02841 GBP_C: Guanylate-bind 57.5 2.5E+02 0.0053 29.4 14.9 72 168-239 153-228 (297)
311 PF09728 Taxilin: Myosin-like 57.5 2.7E+02 0.0058 29.8 26.7 61 305-374 240-300 (309)
312 KOG1853 LIS1-interacting prote 57.4 2.8E+02 0.006 29.9 19.1 74 166-251 26-99 (333)
313 PF07989 Microtub_assoc: Micro 57.3 90 0.0019 27.0 8.5 30 196-232 2-31 (75)
314 PF14077 WD40_alt: Alternative 57.3 10 0.00022 30.7 2.5 21 303-323 19-39 (48)
315 PF02994 Transposase_22: L1 tr 56.8 29 0.00063 37.7 6.8 38 302-339 151-188 (370)
316 PRK11519 tyrosine kinase; Prov 56.7 3.9E+02 0.0085 31.5 20.3 32 349-380 373-404 (719)
317 PF00170 bZIP_1: bZIP transcri 56.7 83 0.0018 25.6 7.9 30 299-328 23-52 (64)
318 TIGR03752 conj_TIGR03752 integ 56.4 1.2E+02 0.0027 34.5 11.6 21 13-33 5-25 (472)
319 TIGR01730 RND_mfp RND family e 56.3 68 0.0015 32.3 8.9 42 221-262 77-118 (322)
320 PRK13922 rod shape-determining 56.3 32 0.00069 35.1 6.7 36 224-259 71-106 (276)
321 PF14073 Cep57_CLD: Centrosome 56.2 2.3E+02 0.005 28.6 18.1 75 241-319 59-137 (178)
322 PF06810 Phage_GP20: Phage min 56.0 1.3E+02 0.0028 29.1 10.4 35 215-249 13-47 (155)
323 PF13874 Nup54: Nucleoporin co 55.9 91 0.002 29.4 9.1 59 205-266 34-92 (141)
324 PF09304 Cortex-I_coil: Cortex 55.9 1.8E+02 0.0039 27.3 12.9 41 300-340 56-96 (107)
325 TIGR02977 phageshock_pspA phag 55.8 2.3E+02 0.0049 28.5 22.4 108 166-284 37-149 (219)
326 TIGR00219 mreC rod shape-deter 55.1 33 0.00072 35.9 6.7 37 223-259 67-104 (283)
327 COG1842 PspA Phage shock prote 54.9 2.6E+02 0.0056 28.8 18.6 45 218-262 27-71 (225)
328 PF11544 Spc42p: Spindle pole 54.1 70 0.0015 28.3 7.3 28 203-230 7-34 (76)
329 PF14362 DUF4407: Domain of un 53.9 2.7E+02 0.006 28.8 16.9 28 208-235 135-162 (301)
330 PF03962 Mnd1: Mnd1 family; I 53.8 2.4E+02 0.0052 28.1 13.6 26 348-373 137-162 (188)
331 PF04102 SlyX: SlyX; InterPro 53.7 56 0.0012 27.5 6.6 37 201-237 4-40 (69)
332 KOG4787 Uncharacterized conser 53.7 4.6E+02 0.0099 31.3 18.7 42 348-389 503-544 (852)
333 TIGR02971 heterocyst_DevB ABC 53.6 2.7E+02 0.0059 28.7 16.8 63 204-266 93-155 (327)
334 PF03112 DUF244: Uncharacteriz 53.2 92 0.002 30.8 8.7 74 169-242 23-104 (158)
335 PF07851 TMPIT: TMPIT-like pro 52.4 1.6E+02 0.0035 32.2 11.3 38 164-201 1-38 (330)
336 PRK00888 ftsB cell division pr 52.4 24 0.00052 32.0 4.5 29 348-376 36-64 (105)
337 PF04949 Transcrip_act: Transc 52.3 2.5E+02 0.0054 27.9 15.1 28 307-334 110-137 (159)
338 COG3206 GumC Uncharacterized p 52.0 3.6E+02 0.0079 29.7 19.8 26 351-376 378-403 (458)
339 TIGR03794 NHPM_micro_HlyD NHPM 51.4 3.5E+02 0.0076 29.3 18.5 24 165-188 94-117 (421)
340 PF14282 FlxA: FlxA-like prote 51.3 1E+02 0.0022 28.0 8.3 41 295-335 44-84 (106)
341 PF05278 PEARLI-4: Arabidopsis 51.2 3E+02 0.0065 29.4 12.8 25 117-141 93-119 (269)
342 PRK13169 DNA replication intia 51.1 65 0.0014 30.0 7.1 47 202-248 9-55 (110)
343 KOG4715 SWI/SNF-related matrix 51.0 1.4E+02 0.0031 32.8 10.5 100 167-282 221-326 (410)
344 PF12126 DUF3583: Protein of u 50.9 3E+02 0.0064 30.1 12.7 49 225-273 6-55 (324)
345 smart00340 HALZ homeobox assoc 50.8 29 0.00063 27.7 4.1 31 215-245 5-35 (44)
346 PRK00295 hypothetical protein; 50.6 91 0.002 26.4 7.4 36 202-237 6-41 (68)
347 PF06160 EzrA: Septation ring 50.6 4.4E+02 0.0096 30.3 22.6 61 225-285 274-334 (560)
348 KOG0247 Kinesin-like protein [ 50.4 5.5E+02 0.012 31.3 16.1 29 304-332 580-608 (809)
349 PLN03229 acetyl-coenzyme A car 50.3 3.4E+02 0.0073 32.9 14.2 18 291-308 527-544 (762)
350 PF11180 DUF2968: Protein of u 50.0 3E+02 0.0065 28.2 13.9 19 268-286 165-183 (192)
351 PLN03188 kinesin-12 family pro 49.9 6.9E+02 0.015 32.3 20.2 90 195-288 1111-1211(1320)
352 PF07716 bZIP_2: Basic region 49.7 42 0.00091 26.6 5.0 30 299-328 22-51 (54)
353 KOG3091 Nuclear pore complex, 49.7 1.6E+02 0.0034 34.0 11.1 66 256-338 337-405 (508)
354 KOG3564 GTPase-activating prot 49.6 1.1E+02 0.0024 35.3 9.8 31 166-196 27-57 (604)
355 PF06637 PV-1: PV-1 protein (P 49.3 4.4E+02 0.0095 29.8 14.7 24 217-240 287-310 (442)
356 PF14915 CCDC144C: CCDC144C pr 49.0 3.9E+02 0.0084 29.1 24.9 192 163-372 66-290 (305)
357 PF00804 Syntaxin: Syntaxin; 48.8 1.6E+02 0.0035 24.6 12.5 65 217-281 9-73 (103)
358 PF13166 AAA_13: AAA domain 48.5 4.8E+02 0.01 30.0 16.8 14 482-495 571-584 (712)
359 PRK02793 phi X174 lysis protei 48.4 89 0.0019 26.7 7.0 36 201-236 8-43 (72)
360 PF06785 UPF0242: Uncharacteri 48.4 4.3E+02 0.0093 29.5 18.8 24 407-432 237-260 (401)
361 KOG0244 Kinesin-like protein [ 48.3 4E+02 0.0086 33.0 14.6 85 249-333 526-610 (913)
362 PF07989 Microtub_assoc: Micro 47.8 99 0.0022 26.8 7.3 30 304-333 2-31 (75)
363 PRK05431 seryl-tRNA synthetase 47.8 1E+02 0.0022 34.1 9.3 25 216-240 36-60 (425)
364 PRK04406 hypothetical protein; 47.8 88 0.0019 27.1 7.0 28 203-230 13-40 (75)
365 COG3074 Uncharacterized protei 47.7 1.4E+02 0.003 26.3 8.1 27 299-325 15-41 (79)
366 PF04977 DivIC: Septum formati 47.7 61 0.0013 26.5 5.9 27 215-241 24-50 (80)
367 PF14257 DUF4349: Domain of un 47.5 97 0.0021 31.5 8.5 67 159-229 124-190 (262)
368 TIGR01069 mutS2 MutS2 family p 47.3 3.1E+02 0.0067 32.9 13.6 43 220-262 513-555 (771)
369 TIGR02231 conserved hypothetic 47.2 2.8E+02 0.006 31.2 12.7 32 304-335 154-189 (525)
370 PF10481 CENP-F_N: Cenp-F N-te 46.9 1E+02 0.0022 33.2 8.6 75 299-375 15-89 (307)
371 PF07246 Phlebovirus_NSM: Phle 46.8 1.3E+02 0.0028 32.0 9.4 64 219-283 179-242 (264)
372 PLN03229 acetyl-coenzyme A car 45.9 6.4E+02 0.014 30.7 19.3 137 161-304 430-609 (762)
373 PRK00846 hypothetical protein; 45.7 1.1E+02 0.0023 27.0 7.2 38 201-238 13-50 (77)
374 PF13747 DUF4164: Domain of un 45.4 2.2E+02 0.0048 25.3 10.2 33 307-339 51-83 (89)
375 PF10146 zf-C4H2: Zinc finger- 45.4 3.7E+02 0.008 27.9 15.6 14 304-317 90-103 (230)
376 PF10146 zf-C4H2: Zinc finger- 45.0 3.7E+02 0.0081 27.8 13.9 22 303-324 82-103 (230)
377 PF02841 GBP_C: Guanylate-bind 44.9 3.9E+02 0.0084 27.9 15.3 14 360-373 284-297 (297)
378 PF01486 K-box: K-box region; 44.8 2.2E+02 0.0048 25.1 10.3 26 307-332 73-98 (100)
379 PF13863 DUF4200: Domain of un 44.8 2.3E+02 0.0051 25.4 16.3 46 240-285 8-53 (126)
380 TIGR00293 prefoldin, archaeal 44.6 1.8E+02 0.0038 26.4 8.9 40 220-259 4-43 (126)
381 KOG1962 B-cell receptor-associ 44.6 3.4E+02 0.0074 28.2 11.7 18 246-263 172-189 (216)
382 PF11365 DUF3166: Protein of u 44.5 54 0.0012 29.9 5.4 68 166-233 14-94 (96)
383 PRK15422 septal ring assembly 44.4 1.7E+02 0.0037 26.1 8.3 28 299-326 15-42 (79)
384 TIGR01069 mutS2 MutS2 family p 44.3 5.7E+02 0.012 30.8 15.2 11 484-494 736-746 (771)
385 PTZ00491 major vault protein; 44.2 3.4E+02 0.0075 33.3 13.2 50 179-235 663-712 (850)
386 PF07851 TMPIT: TMPIT-like pro 44.0 3.1E+02 0.0068 30.0 11.9 87 220-322 2-88 (330)
387 PRK04325 hypothetical protein; 43.9 1.1E+02 0.0025 26.2 7.1 33 203-235 11-43 (74)
388 PRK02119 hypothetical protein; 43.8 1.2E+02 0.0027 26.0 7.2 32 202-233 10-41 (73)
389 TIGR00414 serS seryl-tRNA synt 43.8 1.3E+02 0.0028 33.2 9.4 24 217-240 39-62 (418)
390 cd07599 BAR_Rvs167p The Bin/Am 43.5 3.1E+02 0.0068 27.1 11.2 106 163-269 67-179 (216)
391 cd00187 TOP4c DNA Topoisomeras 43.4 3.3E+02 0.0072 30.7 12.4 100 251-375 325-427 (445)
392 KOG2417 Predicted G-protein co 43.4 1.9E+02 0.004 32.5 10.1 13 272-284 250-262 (462)
393 PRK03947 prefoldin subunit alp 43.4 2.7E+02 0.0059 25.7 12.9 38 215-252 13-50 (140)
394 PF02403 Seryl_tRNA_N: Seryl-t 42.5 98 0.0021 27.3 6.7 34 216-249 37-70 (108)
395 PF13874 Nup54: Nucleoporin co 42.4 2.1E+02 0.0045 27.0 9.3 28 309-336 72-99 (141)
396 TIGR03495 phage_LysB phage lys 42.3 3.3E+02 0.007 26.3 10.9 54 216-269 27-80 (135)
397 cd07652 F-BAR_Rgd1 The F-BAR ( 42.2 3.9E+02 0.0085 27.2 14.9 141 237-406 91-231 (234)
398 COG1730 GIM5 Predicted prefold 42.1 3.4E+02 0.0073 26.5 11.8 44 216-259 7-50 (145)
399 PRK00409 recombination and DNA 42.1 7E+02 0.015 30.1 16.6 9 174-182 431-439 (782)
400 PF14257 DUF4349: Domain of un 41.8 1.2E+02 0.0026 30.9 8.1 47 215-261 132-184 (262)
401 KOG4796 RNA polymerase II elon 41.7 1.8E+02 0.0039 34.0 10.1 85 231-326 507-598 (604)
402 PF14362 DUF4407: Domain of un 41.7 4.2E+02 0.0092 27.5 15.5 34 293-326 180-213 (301)
403 PF10482 CtIP_N: Tumour-suppre 41.7 3.2E+02 0.007 26.1 12.6 24 301-324 95-118 (120)
404 PF10205 KLRAQ: Predicted coil 41.5 3E+02 0.0064 25.6 10.5 39 295-333 33-71 (102)
405 PRK13169 DNA replication intia 41.3 1.2E+02 0.0025 28.3 7.2 32 304-335 24-55 (110)
406 PRK00736 hypothetical protein; 41.2 1.4E+02 0.003 25.3 7.1 29 203-231 7-35 (68)
407 PF10498 IFT57: Intra-flagella 41.2 5.3E+02 0.011 28.4 17.9 69 218-286 216-288 (359)
408 PF03961 DUF342: Protein of un 41.1 1.3E+02 0.0027 33.3 8.7 77 163-239 330-406 (451)
409 PRK09343 prefoldin subunit bet 41.0 3E+02 0.0064 25.5 11.3 43 188-230 11-53 (121)
410 KOG0962 DNA repair protein RAD 40.5 9.4E+02 0.02 31.1 24.7 18 537-554 1239-1256(1294)
411 COG5509 Uncharacterized small 40.5 40 0.00086 28.8 3.7 26 217-242 27-52 (65)
412 PF10205 KLRAQ: Predicted coil 40.4 1.9E+02 0.0042 26.8 8.3 25 350-374 44-68 (102)
413 PF00170 bZIP_1: bZIP transcri 40.4 1E+02 0.0022 25.0 6.1 29 214-242 25-53 (64)
414 KOG2264 Exostosin EXT1L [Signa 40.4 1.4E+02 0.0031 35.2 9.1 17 214-230 106-122 (907)
415 PF14817 HAUS5: HAUS augmin-li 39.9 7.1E+02 0.015 29.6 17.3 78 297-377 391-471 (632)
416 PRK13729 conjugal transfer pil 39.7 1.1E+02 0.0024 34.9 8.1 15 250-264 73-87 (475)
417 PF06698 DUF1192: Protein of u 39.4 65 0.0014 27.1 4.7 31 215-245 21-51 (59)
418 PF06156 DUF972: Protein of un 39.2 1.4E+02 0.003 27.5 7.4 34 304-337 24-57 (107)
419 PF05529 Bap31: B-cell recepto 38.9 2.9E+02 0.0063 26.9 10.0 62 220-285 123-189 (192)
420 PRK15178 Vi polysaccharide exp 38.9 4.4E+02 0.0095 29.9 12.4 73 166-238 241-337 (434)
421 PRK09841 cryptic autophosphory 38.7 7.3E+02 0.016 29.4 20.2 32 348-379 372-403 (726)
422 PF12808 Mto2_bdg: Micro-tubul 38.5 1E+02 0.0022 25.4 5.6 25 351-375 27-51 (52)
423 PRK11578 macrolide transporter 38.5 3.2E+02 0.0069 29.0 11.0 27 233-259 131-157 (370)
424 PF08172 CASP_C: CASP C termin 38.2 64 0.0014 33.6 5.6 35 203-237 95-129 (248)
425 KOG2991 Splicing regulator [RN 37.9 5.6E+02 0.012 27.8 19.0 75 191-271 83-168 (330)
426 PF12709 Kinetocho_Slk19: Cent 37.7 3.1E+02 0.0068 24.8 9.9 30 307-336 47-76 (87)
427 KOG2991 Splicing regulator [RN 37.7 5.6E+02 0.012 27.8 21.9 23 241-263 179-201 (330)
428 PRK02119 hypothetical protein; 37.7 2.5E+02 0.0053 24.2 8.1 30 217-246 4-33 (73)
429 KOG2607 CDK5 activator-binding 37.3 7E+02 0.015 28.7 16.0 102 206-325 386-489 (505)
430 PRK12705 hypothetical protein; 37.2 7.1E+02 0.015 28.8 17.4 10 564-573 442-451 (508)
431 smart00338 BRLZ basic region l 37.2 1E+02 0.0022 25.1 5.6 26 215-240 26-51 (65)
432 PF13935 Ead_Ea22: Ead/Ea22-li 36.9 2.3E+02 0.005 26.8 8.6 37 216-255 75-113 (139)
433 PF05010 TACC: Transforming ac 36.7 4.8E+02 0.011 26.7 23.2 45 165-209 7-52 (207)
434 PF04859 DUF641: Plant protein 36.1 3.7E+02 0.0079 25.9 9.8 44 216-263 13-65 (131)
435 PF05384 DegS: Sensor protein 36.1 4.4E+02 0.0095 26.0 17.5 60 307-375 96-155 (159)
436 PF07544 Med9: RNA polymerase 35.9 78 0.0017 27.5 4.9 61 161-224 22-82 (83)
437 PF10458 Val_tRNA-synt_C: Valy 35.7 2.5E+02 0.0055 23.2 7.7 66 306-373 1-66 (66)
438 PF09727 CortBP2: Cortactin-bi 35.5 5E+02 0.011 26.5 14.7 110 165-286 79-188 (192)
439 KOG4005 Transcription factor X 35.4 4E+02 0.0087 28.5 10.6 37 361-397 196-233 (292)
440 PF10046 BLOC1_2: Biogenesis o 34.9 3.3E+02 0.0072 24.3 11.7 13 272-284 67-79 (99)
441 PF10191 COG7: Golgi complex c 34.9 6.5E+02 0.014 30.3 13.7 109 203-312 65-184 (766)
442 KOG4809 Rab6 GTPase-interactin 34.7 8.5E+02 0.018 28.9 22.8 110 165-286 241-374 (654)
443 PF04977 DivIC: Septum formati 34.4 65 0.0014 26.3 4.1 26 349-374 27-52 (80)
444 COG4372 Uncharacterized protei 34.3 7.6E+02 0.016 28.2 24.2 33 307-339 198-230 (499)
445 PF12329 TMF_DNA_bd: TATA elem 34.2 3E+02 0.0066 23.6 9.2 29 309-337 33-61 (74)
446 PF12001 DUF3496: Domain of un 34.0 4E+02 0.0088 25.0 9.5 69 200-271 6-75 (111)
447 COG4396 Mu-like prophage host- 34.0 2.1E+02 0.0046 28.2 7.9 59 215-273 18-81 (170)
448 KOG4403 Cell surface glycoprot 33.9 3.5E+02 0.0076 31.1 10.6 22 167-188 118-139 (575)
449 KOG0837 Transcriptional activa 33.9 1.5E+02 0.0033 31.7 7.4 30 299-328 224-253 (279)
450 PF15294 Leu_zip: Leucine zipp 33.6 6.4E+02 0.014 27.2 22.5 224 170-424 8-257 (278)
451 PF15030 DUF4527: Protein of u 33.5 4E+02 0.0087 28.5 10.3 50 218-267 12-61 (277)
452 PF12808 Mto2_bdg: Micro-tubul 33.4 1E+02 0.0023 25.3 4.9 37 203-239 6-46 (52)
453 PLN02678 seryl-tRNA synthetase 33.3 2.4E+02 0.0051 31.9 9.3 15 362-376 143-157 (448)
454 KOG4637 Adaptor for phosphoino 33.3 7.7E+02 0.017 28.0 17.9 69 170-248 139-207 (464)
455 PF13863 DUF4200: Domain of un 33.2 3.6E+02 0.0078 24.2 16.8 20 309-328 81-100 (126)
456 TIGR01010 BexC_CtrB_KpsE polys 33.1 6.2E+02 0.013 26.9 18.8 25 349-373 281-305 (362)
457 PF10267 Tmemb_cc2: Predicted 33.1 7.5E+02 0.016 27.8 15.9 84 303-393 259-348 (395)
458 TIGR02977 phageshock_pspA phag 33.0 5.2E+02 0.011 26.0 20.9 36 303-338 114-149 (219)
459 PRK10246 exonuclease subunit S 32.7 1.1E+03 0.023 29.4 28.6 66 168-233 217-282 (1047)
460 PF04094 DUF390: Protein of un 32.6 1E+03 0.022 29.2 15.9 46 326-373 641-690 (828)
461 PF14916 CCDC92: Coiled-coil d 32.6 98 0.0021 26.2 4.8 40 272-324 4-43 (60)
462 PF11577 NEMO: NF-kappa-B esse 32.3 3.3E+02 0.0071 23.5 8.6 57 222-278 6-66 (68)
463 KOG4436 Predicted GTPase activ 32.1 5.8E+02 0.013 31.5 12.4 67 311-383 857-923 (948)
464 PF06810 Phage_GP20: Phage min 31.9 2.9E+02 0.0063 26.8 8.6 11 365-375 121-131 (155)
465 PF13094 CENP-Q: CENP-Q, a CEN 31.9 2.7E+02 0.0059 26.4 8.3 30 203-232 29-58 (160)
466 KOG2391 Vacuolar sorting prote 31.8 2.6E+02 0.0057 31.0 9.0 56 227-282 223-278 (365)
467 COG4985 ABC-type phosphate tra 31.7 4.2E+02 0.0091 28.3 10.1 55 164-235 152-206 (289)
468 PF05769 DUF837: Protein of un 31.7 5.4E+02 0.012 25.7 20.6 83 166-248 6-96 (181)
469 COG1566 EmrA Multidrug resista 31.7 6.1E+02 0.013 27.9 11.9 99 161-279 85-184 (352)
470 KOG3819 Uncharacterized conser 31.4 2.1E+02 0.0046 32.8 8.4 125 166-321 41-165 (513)
471 PF00901 Orbi_VP5: Orbivirus o 31.2 9E+02 0.02 28.2 16.0 19 308-326 157-175 (508)
472 PF04102 SlyX: SlyX; InterPro 30.6 3.2E+02 0.0069 23.0 7.6 23 223-245 5-27 (69)
473 TIGR02209 ftsL_broad cell divi 30.5 2.8E+02 0.0061 23.2 7.4 36 208-243 24-59 (85)
474 PF09006 Surfac_D-trimer: Lung 30.3 1.2E+02 0.0025 24.7 4.6 29 217-245 1-29 (46)
475 PRK10803 tol-pal system protei 30.3 3.8E+02 0.0082 27.9 9.7 34 204-237 43-76 (263)
476 PF05008 V-SNARE: Vesicle tran 30.3 3.2E+02 0.0069 22.7 8.3 58 298-370 21-78 (79)
477 COG2900 SlyX Uncharacterized p 30.0 3.3E+02 0.0072 24.0 7.6 38 302-339 22-59 (72)
478 PRK10869 recombination and rep 29.0 9.4E+02 0.02 27.7 22.7 50 348-406 343-392 (553)
479 PRK00409 recombination and DNA 28.9 1.1E+03 0.024 28.5 16.8 18 223-240 521-538 (782)
480 PF04912 Dynamitin: Dynamitin 28.6 8E+02 0.017 26.7 18.3 47 294-340 314-360 (388)
481 KOG1850 Myosin-like coiled-coi 28.6 8.6E+02 0.019 27.1 21.7 119 222-340 208-330 (391)
482 KOG0972 Huntingtin interacting 28.5 8.4E+02 0.018 27.0 13.7 97 214-314 254-354 (384)
483 PRK14161 heat shock protein Gr 28.3 2.7E+02 0.0058 27.8 7.9 50 218-270 15-64 (178)
484 PRK05431 seryl-tRNA synthetase 28.3 3.1E+02 0.0066 30.5 9.1 6 416-421 227-232 (425)
485 cd00176 SPEC Spectrin repeats, 28.2 4.6E+02 0.01 23.9 21.1 67 295-372 139-205 (213)
486 KOG0243 Kinesin-like protein [ 28.2 1.3E+03 0.029 29.2 26.0 83 203-285 478-560 (1041)
487 KOG2391 Vacuolar sorting prote 27.8 6.5E+02 0.014 28.1 11.1 57 231-287 220-276 (365)
488 PF09738 DUF2051: Double stran 27.7 5E+02 0.011 28.0 10.3 89 168-272 78-166 (302)
489 PRK00106 hypothetical protein; 27.7 1E+03 0.022 27.7 22.1 20 296-315 126-145 (535)
490 KOG4797 Transcriptional regula 27.5 85 0.0018 29.6 4.0 31 166-196 66-96 (123)
491 PF05308 Mito_fiss_reg: Mitoch 27.4 52 0.0011 34.4 2.9 25 222-246 122-146 (253)
492 PF07246 Phlebovirus_NSM: Phle 27.4 5.7E+02 0.012 27.4 10.3 9 74-82 60-68 (264)
493 PF02344 Myc-LZ: Myc leucine z 27.3 1.3E+02 0.0029 22.7 4.1 27 350-376 5-31 (32)
494 KOG4603 TBP-1 interacting prot 27.3 4.5E+02 0.0098 26.9 9.1 15 302-316 100-114 (201)
495 KOG0992 Uncharacterized conser 27.1 1.1E+03 0.024 27.8 21.5 53 271-329 263-315 (613)
496 PF05084 GRA6: Granule antigen 27.0 1E+02 0.0022 31.0 4.7 46 18-63 157-203 (215)
497 PLN02320 seryl-tRNA synthetase 26.9 3E+02 0.0065 31.7 8.9 74 209-283 94-167 (502)
498 PF12711 Kinesin-relat_1: Kine 26.9 4.7E+02 0.01 23.6 9.0 80 200-280 2-86 (86)
499 PLN02320 seryl-tRNA synthetase 26.6 4E+02 0.0086 30.8 9.7 71 232-321 93-163 (502)
500 PF05600 DUF773: Protein of un 26.5 5.7E+02 0.012 29.4 11.0 78 188-268 419-496 (507)
No 1
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.80 E-value=0.012 Score=70.52 Aligned_cols=208 Identities=22% Similarity=0.262 Sum_probs=114.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH-------
Q 045262 165 CEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQ------- 237 (594)
Q Consensus 165 ~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~q------- 237 (594)
.+.++..+....+.++++...|+.++-++. ..+++|+++|..-.+++..+...|+-|+....-++++
T Consensus 783 le~~l~~~~~~~~~~~~~~~~~ee~~~~lr------~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d 856 (1293)
T KOG0996|consen 783 LERALSKMSDKARQHQEQLHELEERVRKLR------ERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVD 856 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCc
Confidence 344555555566666666655655555544 3477788877777777666666555555443333322
Q ss_pred -------HHHHHhHHHHHHHH-----H-HHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHHHHHH----HHhhcCChh
Q 045262 238 -------VADHAKTVSELEAA-----K-TKIKLLKKKLRTEA----EQNREQILAVQERVTKLQEQA----HKAAAIDPD 296 (594)
Q Consensus 238 -------v~e~~~v~~ELE~a-----r-~kir~LqkKl~~~a----~q~K~qi~~Lkq~v~~Lq~~E----~e~~~~d~E 296 (594)
-.....+..|++.+ + ++|+.||.+|.... +..+..+..+.+++..|.+.= ..+..++--
T Consensus 857 ~~~l~~~~~~ie~l~kE~e~~qe~~~Kk~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~ 936 (1293)
T KOG0996|consen 857 KKRLKELEEQIEELKKEVEELQEKAAKKARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRN 936 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCccc
Confidence 22233344444444 5 88888888877543 233444555555555553320 111122222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhH-HHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q 045262 297 TQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGE-REALNEMSQRLREENTSLSKEVEKLHAD 375 (594)
Q Consensus 297 ~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~e-v~~i~ee~~~LR~~NedL~kQVEqLq~d 375 (594)
+++=-..+.+||-++..++...+.|-.+-..+..+..--+..+. +..+ ...++++...++..++++.+++-.|+.+
T Consensus 937 i~k~q~~l~~le~~~~~~e~e~~~L~e~~~~~~~k~~E~~~~~~---e~~~~~~E~k~~~~~~k~~~e~i~k~~~~lk~~ 1013 (1293)
T KOG0996|consen 937 IAKAQKKLSELEREIEDTEKELDDLTEELKGLEEKAAELEKEYK---EAEESLKEIKKELRDLKSELENIKKSENELKAE 1013 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22222234445555555555555555544444444333222222 2211 2456788899999999999999999999
Q ss_pred hcchhhH
Q 045262 376 KCAGVEE 382 (594)
Q Consensus 376 RfseVEE 382 (594)
|.. ++=
T Consensus 1014 rId-~~~ 1019 (1293)
T KOG0996|consen 1014 RID-IEN 1019 (1293)
T ss_pred hcc-HHH
Confidence 987 553
No 2
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.60 E-value=0.099 Score=61.16 Aligned_cols=8 Identities=38% Similarity=0.210 Sum_probs=3.2
Q ss_pred HHHhhhcC
Q 045262 487 KLRKLVRG 494 (594)
Q Consensus 487 KLKKw~~g 494 (594)
++-.++-|
T Consensus 614 ~~~~~~lg 621 (1164)
T TIGR02169 614 PAFKYVFG 621 (1164)
T ss_pred HHHHHHCC
Confidence 33444444
No 3
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.60 E-value=0.049 Score=63.66 Aligned_cols=29 Identities=10% Similarity=0.276 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045262 165 CEQEVKNLKNMVQMLQDREKNLEVELLEY 193 (594)
Q Consensus 165 ~e~EI~~LR~lVeeLqERE~~LE~ELLEy 193 (594)
...++..+...+..+++.-..++.++.++
T Consensus 256 l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 284 (1164)
T TIGR02169 256 LTEEISELEKRLEEIEQLLEELNKKIKDL 284 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45667777777777777766666666654
No 4
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.55 E-value=0.14 Score=59.69 Aligned_cols=51 Identities=29% Similarity=0.270 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHHHHhhc
Q 045262 350 ALNEMSQRLREENTSLSKEVEKLHADKCAGVEELVYLKWINACLRYELRNY 400 (594)
Q Consensus 350 ~i~ee~~~LR~~NedL~kQVEqLq~dRfseVEELVYLRWVNACLR~ELrn~ 400 (594)
.+.++...++.....+..+++.++.....--.++-.++.--+=++.++.++
T Consensus 884 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~l 934 (1179)
T TIGR02168 884 SLEEALALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGL 934 (1179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555666555554444455555555544455555444
No 5
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=97.52 E-value=0.16 Score=59.11 Aligned_cols=29 Identities=24% Similarity=0.460 Sum_probs=15.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 164 DCEQEVKNLKNMVQMLQDREKNLEVELLE 192 (594)
Q Consensus 164 d~e~EI~~LR~lVeeLqERE~~LE~ELLE 192 (594)
....++..|+..+..++..-..++.++.+
T Consensus 674 ~l~~e~~~l~~~~~~l~~~l~~~~~~~~~ 702 (1179)
T TIGR02168 674 ERRREIEELEEKIEELEEKIAELEKALAE 702 (1179)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456666666655555554444444433
No 6
>PRK11637 AmiB activator; Provisional
Probab=97.47 E-value=0.11 Score=56.10 Aligned_cols=68 Identities=10% Similarity=0.116 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q 045262 305 KVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHA 374 (594)
Q Consensus 305 keLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQVEqLq~ 374 (594)
.+|+.+..+|.....+++.++.+|.......+.....+. ........+...|+..-..|.++|+.|+.
T Consensus 187 ~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~--~~~~~~~~~l~~l~~~~~~L~~~I~~l~~ 254 (428)
T PRK11637 187 AELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLE--SSLQKDQQQLSELRANESRLRDSIARAER 254 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666666666554444333332211 11112233445555566666666666554
No 7
>PHA02562 46 endonuclease subunit; Provisional
Probab=97.46 E-value=0.045 Score=59.78 Aligned_cols=35 Identities=20% Similarity=0.203 Sum_probs=13.8
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 045262 203 VMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQ 237 (594)
Q Consensus 203 v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~q 237 (594)
+.++++++..-..++..+...+..|+.+...|..+
T Consensus 215 i~~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l~~~ 249 (562)
T PHA02562 215 IARKQNKYDELVEEAKTIKAEIEELTDELLNLVMD 249 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 33444444333333334444444444443333333
No 8
>PRK03918 chromosome segregation protein; Provisional
Probab=97.45 E-value=0.1 Score=60.14 Aligned_cols=115 Identities=19% Similarity=0.278 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 045262 170 KNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELE 249 (594)
Q Consensus 170 ~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE 249 (594)
..++...+.++.+-..|+..+-++ .+.+..+..++.++.....++..+..++..++.+...++.++..+.....+++
T Consensus 165 ~~~~~~~~~~~~~~~~l~~~l~~l---~~i~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l~~~~~~~~ 241 (880)
T PRK03918 165 KNLGEVIKEIKRRIERLEKFIKRT---ENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIE 241 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555443 33344567777777777778888888888887777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHH
Q 045262 250 AAKTKIKLLKKKLRTE---AEQNREQILAVQERVTKLQEQA 287 (594)
Q Consensus 250 ~ar~kir~LqkKl~~~---a~q~K~qi~~Lkq~v~~Lq~~E 287 (594)
.++.++..++.+++.. ......++..+++++..|+...
T Consensus 242 ~l~~~~~~l~~~~~~l~~~i~~l~~el~~l~~~l~~l~~~~ 282 (880)
T PRK03918 242 ELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKV 282 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777655443 3344445556666666655543
No 9
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.42 E-value=0.11 Score=62.91 Aligned_cols=99 Identities=28% Similarity=0.324 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-hhhHHHHH-------HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 045262 166 EQEVKNLKNMVQMLQDREKNLEVELLEYYGL-KEQETIVM-------ELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQ 237 (594)
Q Consensus 166 e~EI~~LR~lVeeLqERE~~LE~ELLEyy~L-KEQEa~v~-------ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~q 237 (594)
-.++..++..+..+.+.-..++.++-++..- .+-+..|. ++...+.....+.-.+..++..++.+...++.+
T Consensus 231 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~ 310 (1163)
T COG1196 231 LAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRER 310 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555444332 22222333 333333333333333445566666666666665
Q ss_pred HHHHHhHHHHH----HHHHHHHHHHHHHHHH
Q 045262 238 VADHAKTVSEL----EAAKTKIKLLKKKLRT 264 (594)
Q Consensus 238 v~e~~~v~~EL----E~ar~kir~LqkKl~~ 264 (594)
+.....-..++ ...+.++..++..+..
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (1163)
T COG1196 311 LEELENELEELEERLEELKEKIEALKEELEE 341 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554443222 2334444444444443
No 10
>PRK03918 chromosome segregation protein; Provisional
Probab=97.41 E-value=0.099 Score=60.27 Aligned_cols=26 Identities=23% Similarity=0.507 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 165 CEQEVKNLKNMVQMLQDREKNLEVEL 190 (594)
Q Consensus 165 ~e~EI~~LR~lVeeLqERE~~LE~EL 190 (594)
+..+|..|...+..|+++-..++.++
T Consensus 457 ~~~ei~~l~~~~~~l~~~~~~l~~~~ 482 (880)
T PRK03918 457 YTAELKRIEKELKEIEEKERKLRKEL 482 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666665555555443
No 11
>PRK02224 chromosome segregation protein; Provisional
Probab=97.41 E-value=0.1 Score=60.48 Aligned_cols=115 Identities=18% Similarity=0.193 Sum_probs=55.3
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 045262 206 LQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAK----TVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVT 281 (594)
Q Consensus 206 Le~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~----v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~ 281 (594)
+++.+.....+++....++..|+.+...|++.+.++.. +..+++.+..++..+++++.....+ +.-|. .+.
T Consensus 521 l~~~~~~~~e~le~~~~~~~~l~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~le-~~~ 595 (880)
T PRK02224 521 LEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELKER----IESLE-RIR 595 (880)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH----HHHHH-HHH
Confidence 33334444445555555666666666666666666655 3334444445555555555433221 11111 111
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhh
Q 045262 282 KLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLEST 335 (594)
Q Consensus 282 ~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sA 335 (594)
.++ .+++.....+.+|+.++.+|.....+++.+..++-.+++..
T Consensus 596 ~~~----------~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~l 639 (880)
T PRK02224 596 TLL----------AAIADAEDEIERLREKREALAELNDERRERLAEKRERKREL 639 (880)
T ss_pred HHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 22333334455555555555555555555555555555444
No 12
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=97.38 E-value=0.25 Score=58.32 Aligned_cols=225 Identities=19% Similarity=0.169 Sum_probs=136.8
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 161 EKDDCEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVAD 240 (594)
Q Consensus 161 e~~d~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e 240 (594)
.++..+.-|.+|-..|..|.----+ .+.|+-.++..+++++..-.++...-.+....-.+|.++|+.++++
T Consensus 327 qkd~~~~~~~~~~~e~~~~~~~l~~---------~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaq 397 (980)
T KOG0980|consen 327 QKDPRELQIEQLSREVAQLKAQLEN---------LKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQ 397 (980)
T ss_pred cCChhhHHHHHHHHHHHHHhhhhhh---------HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4455566677777766665432211 2335666788888888877777777777666667778899999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHH-----------HHHHHH
Q 045262 241 HAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQR-----------LKVLEA 309 (594)
Q Consensus 241 ~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~-----------lkeLE~ 309 (594)
..+.+.+++.|...+.++.++.... ..+.-.+|+..+.|...-.+...+.+++.+++.. ..+|..
T Consensus 398 l~a~r~q~eka~~~~ee~e~~~l~~----e~ry~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d 473 (980)
T KOG0980|consen 398 LLASRTQLEKAQVLVEEAENKALAA----ENRYEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLND 473 (980)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999998887777665433 3344445555555554444444444444444322 223333
Q ss_pred HHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhcchhhHHHHHHHH
Q 045262 310 EAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHADKCAGVEELVYLKWI 389 (594)
Q Consensus 310 Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQVEqLq~dRfseVEELVYLRWV 389 (594)
-++++.|.-.++.---.+....|++.+..... -..+++.+...+..+.+......-|++-+-..+=..+.|||--+=-
T Consensus 474 ~le~~~~~~~~~~~K~e~~~~~le~l~~El~~--l~~e~~~lq~~~~~~~qs~~~~~~~l~~~l~~KD~~~~~~~~~~~e 551 (980)
T KOG0980|consen 474 QLEELQRAAGRAETKTESQAKALESLRQELAL--LLIELEELQRTLSNLAQSHNNQLAQLEDLLKQKDRLAAELVAREEE 551 (980)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33333333333333333333444444332221 2345566666678888888888888888888887888888876631
Q ss_pred HHHHHHHHhhc
Q 045262 390 NACLRYELRNY 400 (594)
Q Consensus 390 NACLR~ELrn~ 400 (594)
=+-+|.|+-.-
T Consensus 552 ~~~~~~e~e~s 562 (980)
T KOG0980|consen 552 REALRLEAERS 562 (980)
T ss_pred HHHHHHHHHhh
Confidence 22278887543
No 13
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=97.36 E-value=0.14 Score=58.35 Aligned_cols=191 Identities=20% Similarity=0.266 Sum_probs=108.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 045262 166 EQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTV 245 (594)
Q Consensus 166 e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~ 245 (594)
++|+..|+..|.+|..+-..++.++-. -++++..+...+...+.++.+|+.++.-..++.
T Consensus 327 ~~el~~l~~~l~~l~~~i~~~~~~~~~--------------------l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~ 386 (594)
T PF05667_consen 327 EQELEELQEQLDELESQIEELEAEIKM--------------------LKSSLKQLEEELEEKEAENEELEEELKLKKKTV 386 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777777776655555544433 333444455555555555555555554443333
Q ss_pred HHH--------------HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHH
Q 045262 246 SEL--------------EAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEA 311 (594)
Q Consensus 246 ~EL--------------E~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev 311 (594)
.=| +....++..|+.+...-...-.+++..|+... .....+...+++.++.|..++
T Consensus 387 ~lL~d~e~ni~kL~~~v~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~----------~~~~~e~~~~~~~ik~~r~~~ 456 (594)
T PF05667_consen 387 ELLPDAEENIAKLQALVEASEQRLVELAQQWEKHRAPLIEEYRRLKEKA----------SNRESESKQKLQEIKELREEI 456 (594)
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----------hhcchHHHHHHHHHHHHHHHH
Confidence 322 33333333333333322222222233332222 234466777888888888777
Q ss_pred HHHHHHhHHHHHHhhHhHHhhhhhhhhhhcc--hhh--hH---HHHHHHHHHHHHHhhHHHHHHHHHHh---hhhcchhh
Q 045262 312 EDLRKSNMKLQLENSQLARRLESTQMLEISV--LED--GE---REALNEMSQRLREENTSLSKEVEKLH---ADKCAGVE 381 (594)
Q Consensus 312 ~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~--~E~--~e---v~~i~ee~~~LR~~NedL~kQVEqLq---~dRfseVE 381 (594)
.++-.....-++.-..|...++..-..++-. +.- ++ +.+=++++++.-.+...|.|++..|. ..=|+.++
T Consensus 457 k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~d 536 (594)
T PF05667_consen 457 KEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTD 536 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 7777766666666666666666554443211 100 22 34557788888889999999988775 35699999
Q ss_pred HHHHH
Q 045262 382 ELVYL 386 (594)
Q Consensus 382 ELVYL 386 (594)
||||-
T Consensus 537 Elifr 541 (594)
T PF05667_consen 537 ELIFR 541 (594)
T ss_pred HHHHH
Confidence 99994
No 14
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=97.36 E-value=0.32 Score=59.01 Aligned_cols=63 Identities=22% Similarity=0.312 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 045262 167 QEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLE 235 (594)
Q Consensus 167 ~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq 235 (594)
.+|..+...+..+...-..++.++-.+... +.++.+++.....++..+...+..++.+.+.++
T Consensus 674 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 736 (1163)
T COG1196 674 EELAELEAQLEKLEEELKSLKNELRSLEDL------LEELRRQLEELERQLEELKRELAALEEELEQLQ 736 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433332 344444444444444444444443333333333
No 15
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=97.35 E-value=0.025 Score=63.61 Aligned_cols=221 Identities=22% Similarity=0.271 Sum_probs=118.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-
Q 045262 166 EQEVKNLKNMVQMLQDREKNLEVELLE-YYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAK- 243 (594)
Q Consensus 166 e~EI~~LR~lVeeLqERE~~LE~ELLE-yy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~- 243 (594)
+.||..|+.-|.+|+.+=...+..+.. --.+.++...+-.++.++..-+..++.|...+.-|-.||.||..++....+
T Consensus 112 e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ 191 (546)
T KOG0977|consen 112 EIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQ 191 (546)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 344555555555554443222222211 122344555666677776666667777777777777777777777766654
Q ss_pred -----------------HHHHHHHHH----HHHHHHHHHHHHHH-HHhHHHH-HHHHHHHHHHHHHHHHh-hcCC----h
Q 045262 244 -----------------TVSELEAAK----TKIKLLKKKLRTEA-EQNREQI-LAVQERVTKLQEQAHKA-AAID----P 295 (594)
Q Consensus 244 -----------------v~~ELE~ar----~kir~LqkKl~~~a-~q~K~qi-~~Lkq~v~~Lq~~E~e~-~~~d----~ 295 (594)
+.++|+.++ .+|++++++.+++. ..++... ..|++-+..|.++-+.. ..+. .
T Consensus 192 ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~ 271 (546)
T KOG0977|consen 192 LDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIES 271 (546)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 455677777 78888888888777 4444432 12333333333322111 1111 1
Q ss_pred hHHHHHHHHHH-----------HHHHHHHH-------HHHhHHHHHHhhHhHHhhhhhhhhhhc---chhhhHHHHHHHH
Q 045262 296 DTQSRLQRLKV-----------LEAEAEDL-------RKSNMKLQLENSQLARRLESTQMLEIS---VLEDGEREALNEM 354 (594)
Q Consensus 296 E~ekKlq~lke-----------LE~Ev~EL-------Rr~NkeLQ~EKreL~~KL~sAe~~~~~---~~E~~ev~~i~ee 354 (594)
-.+.|++.++. .=-|+..+ |....+|+-.+.-|..+++.-+.+... .-+ ...+.-..+
T Consensus 272 ~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e-~~L~~kd~~ 350 (546)
T KOG0977|consen 272 WYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRAKLSELESRNSALEKRIEDLEYQLDEDQRSFE-QALNDKDAE 350 (546)
T ss_pred HHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhhhhccccccChhHHHHHHHHHhhhhhhhhhhh-hhhhhHHHH
Confidence 22344444442 11344444 444445555555555554444433311 001 112233466
Q ss_pred HHHHHHhhHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHHHHhhcC
Q 045262 355 SQRLREENTSLSKEVEKLHADKCAGVEELVYLKWINACLRYELRNYQ 401 (594)
Q Consensus 355 ~~~LR~~NedL~kQVEqLq~dRfseVEELVYLRWVNACLR~ELrn~q 401 (594)
+..||+....|+.|++.|=. ++.-|+-|+-.|.
T Consensus 351 i~~mReec~~l~~Elq~LlD--------------~ki~Ld~EI~~YR 383 (546)
T KOG0977|consen 351 IAKMREECQQLSVELQKLLD--------------TKISLDAEIAAYR 383 (546)
T ss_pred HHHHHHHHHHHHHHHHHhhc--------------hHhHHHhHHHHHH
Confidence 78888989999998888855 4566888887663
No 16
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.27 E-value=0.12 Score=61.14 Aligned_cols=104 Identities=24% Similarity=0.355 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHH-----------HHHhHHHHHHHHHHHHHHHHH---HHHHHHHHhHHHHHHHHHHHHHHHHHH---HH
Q 045262 227 LQADNRRLEAQVA-----------DHAKTVSELEAAKTKIKLLKK---KLRTEAEQNREQILAVQERVTKLQEQA---HK 289 (594)
Q Consensus 227 LE~En~RLq~qv~-----------e~~~v~~ELE~ar~kir~Lqk---Kl~~~a~q~K~qi~~Lkq~v~~Lq~~E---~e 289 (594)
||.+|.||.+-+. ++.++.+|+|.-+++|.+|.+ ++++...++..+|+-||+||..-=.-| +.
T Consensus 373 lEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~q 452 (1243)
T KOG0971|consen 373 LEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQ 452 (1243)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Confidence 4444888876554 456788999999999999985 455666677889999999997543333 33
Q ss_pred hhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHH
Q 045262 290 AAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLAR 330 (594)
Q Consensus 290 ~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~ 330 (594)
......++|.|.+-+.+==.++++|+..|.+|++-+++|..
T Consensus 453 LtdknlnlEekVklLeetv~dlEalee~~EQL~Esn~ele~ 493 (1243)
T KOG0971|consen 453 LTDKNLNLEEKVKLLEETVGDLEALEEMNEQLQESNRELEL 493 (1243)
T ss_pred HHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888887444443334556677778888888877643
No 17
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=97.26 E-value=0.065 Score=61.71 Aligned_cols=141 Identities=21% Similarity=0.232 Sum_probs=96.0
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 045262 199 QETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQE 278 (594)
Q Consensus 199 QEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq 278 (594)
|.++|..|....+....=+.+++..|..|++|.++|..-+..--.+.+.+..+=.|......+.+......+..+..|..
T Consensus 472 qs~iIkKLRAk~ke~etl~~K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~ 551 (961)
T KOG4673|consen 472 QSAIIKKLRAKIKEAETLEEKKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEA 551 (961)
T ss_pred HHHHHHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 44556666554433333377888899999999999998888877777777666666666666666677777777888888
Q ss_pred HHHHHHHHHHHhhcCChhHHHHH------HHHHHHHHHHHHHHHHh-----------HHHHHHhhHhHHhhhhhhhhhh
Q 045262 279 RVTKLQEQAHKAAAIDPDTQSRL------QRLKVLEAEAEDLRKSN-----------MKLQLENSQLARRLESTQMLEI 340 (594)
Q Consensus 279 ~v~~Lq~~E~e~~~~d~E~ekKl------q~lkeLE~Ev~ELRr~N-----------keLQ~EKreL~~KL~sAe~~~~ 340 (594)
+...+|+.--. +..|--.+.++ ++-..|-..|.+||.+. ..+-+|+++|-.||++||-+..
T Consensus 552 ~~~a~qat~d~-a~~Dlqk~nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~e 629 (961)
T KOG4673|consen 552 QALAEQATNDE-ARSDLQKENRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCE 629 (961)
T ss_pred HHHHHHHhhhh-hhhhHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888875322 22222122222 23345667788888654 4577899999999999998663
No 18
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.22 E-value=0.11 Score=63.53 Aligned_cols=65 Identities=11% Similarity=0.004 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 173 KNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADH 241 (594)
Q Consensus 173 R~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~ 241 (594)
..-+..|+.+=..|+.++..|-. ...+.+|+.++.....+++.+..++..++.+..+++.++..+
T Consensus 798 ~~ei~~l~~qie~l~~~l~~~~~----~~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~L 862 (1311)
T TIGR00606 798 QMELKDVERKIAQQAAKLQGSDL----DRTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHL 862 (1311)
T ss_pred HHHHHHHHHHHHHHHHHhccccc----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444555554433 124566777777777777777666666666666655555554
No 19
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.21 E-value=0.1 Score=60.38 Aligned_cols=29 Identities=24% Similarity=0.365 Sum_probs=24.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045262 165 CEQEVKNLKNMVQMLQDREKNLEVELLEY 193 (594)
Q Consensus 165 ~e~EI~~LR~lVeeLqERE~~LE~ELLEy 193 (594)
++.||..||.-++..+..|..|+.++--|
T Consensus 423 LE~dvkkLraeLq~~Rq~E~ELRsqis~l 451 (697)
T PF09726_consen 423 LEADVKKLRAELQSSRQSEQELRSQISSL 451 (697)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHhhc
Confidence 46789999999999999999998887643
No 20
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=97.09 E-value=0.2 Score=63.53 Aligned_cols=162 Identities=22% Similarity=0.330 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045262 165 CEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKT 244 (594)
Q Consensus 165 ~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v 244 (594)
.+.++..+...+++.+++...|+.+.-+ .+..|.+|+..+......+..+.++...++.++..|+.++..+...
T Consensus 906 le~~l~~~~~~~e~~ee~~~~le~~~~~------~~~e~~~l~~~~~~~E~~~~k~~~Ek~~~e~~~~~l~~e~~~~~e~ 979 (1930)
T KOG0161|consen 906 LEKELKELKERLEEEEEKNAELERKKRK------LEQEVQELKEQLEELELTLQKLELEKNAAENKLKNLEEEINSLDEN 979 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556777777777777777777666543 2233444444444333333333333333333333333333333222
Q ss_pred HHHHHHHH----HHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHH
Q 045262 245 VSELEAAK----TKIKLLKKKLRTEAEQN---REQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKS 317 (594)
Q Consensus 245 ~~ELE~ar----~kir~LqkKl~~~a~q~---K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~ 317 (594)
...|-..| .+++.|+-.++..-+++ ......|.+++..++..-+..-....++++. .++||.+...++..
T Consensus 980 ~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~---~rkle~el~~~~e~ 1056 (1930)
T KOG0161|consen 980 ISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKA---KRKLEGELKDLQES 1056 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhH
Confidence 22222222 23334443333333222 2223334444444444322222223333322 33444444444444
Q ss_pred hHHHHHHhhHhHHhhhhh
Q 045262 318 NMKLQLENSQLARRLEST 335 (594)
Q Consensus 318 NkeLQ~EKreL~~KL~sA 335 (594)
...+..++.+|...|.-.
T Consensus 1057 ~~~~~~~~~el~~~l~kk 1074 (1930)
T KOG0161|consen 1057 IEELKKQKEELDNQLKKK 1074 (1930)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444444444444444333
No 21
>PRK02224 chromosome segregation protein; Provisional
Probab=97.07 E-value=0.33 Score=56.33 Aligned_cols=20 Identities=30% Similarity=0.263 Sum_probs=7.1
Q ss_pred HHHHHHHHHhHHHHHHhhHh
Q 045262 309 AEAEDLRKSNMKLQLENSQL 328 (594)
Q Consensus 309 ~Ev~ELRr~NkeLQ~EKreL 328 (594)
.++.+|+.....|+..+.++
T Consensus 606 ~~~~~~~~~~~~l~~~~~~~ 625 (880)
T PRK02224 606 DEIERLREKREALAELNDER 625 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333
No 22
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=97.01 E-value=0.21 Score=58.68 Aligned_cols=168 Identities=29% Similarity=0.353 Sum_probs=116.3
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHHHH
Q 045262 202 IVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNRE---QILAVQE 278 (594)
Q Consensus 202 ~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~---qi~~Lkq 278 (594)
.|-.|..+|..++..+......|..+++|..++..++.+ +...++....||+.||++|...-.+.+. ++..++.
T Consensus 344 dve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~---l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~ 420 (775)
T PF10174_consen 344 DVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIED---LRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKE 420 (775)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477888889999999999999999999999999887766 5677788888888888887666655543 3555555
Q ss_pred HHHH-------------HHH----HH-----HHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhh
Q 045262 279 RVTK-------------LQE----QA-----HKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQ 336 (594)
Q Consensus 279 ~v~~-------------Lq~----~E-----~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe 336 (594)
++.. |+. ++ .......++ ..+...+..+..++.+++..+..||-+..+....|..+.
T Consensus 421 Rl~~~~d~~~~~~~~~~lEea~~eker~~e~l~e~r~~~e-~e~~Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~k 499 (775)
T PF10174_consen 421 RLSSQADSSNEDEALETLEEALREKERLQERLEEQRERAE-KERQEELETYQKELKELKAKLESLQKELSEKELQLEDAK 499 (775)
T ss_pred HHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence 5551 111 10 000000111 234556677788899999999999999999888888887
Q ss_pred hhhhcch-----hhhHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 045262 337 MLEISVL-----EDGEREALNEMSQRLREENTSLSKEVEKLH 373 (594)
Q Consensus 337 ~~~~~~~-----E~~ev~~i~ee~~~LR~~NedL~kQVEqLq 373 (594)
..++.+. .+..+..+.=+....|....+|.+|++.++
T Consensus 500 ee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~ 541 (775)
T PF10174_consen 500 EEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLR 541 (775)
T ss_pred hHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 6554332 223344555556677888888999988865
No 23
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=97.00 E-value=0.51 Score=53.54 Aligned_cols=9 Identities=56% Similarity=0.759 Sum_probs=6.4
Q ss_pred HHHHHHHhh
Q 045262 424 AKQLILEYA 432 (594)
Q Consensus 424 AKqLmLeYa 432 (594)
=||-+++|.
T Consensus 439 EkQeL~~yi 447 (546)
T PF07888_consen 439 EKQELLEYI 447 (546)
T ss_pred HHHHHHHHH
Confidence 467778886
No 24
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=96.96 E-value=0.34 Score=61.59 Aligned_cols=171 Identities=21% Similarity=0.221 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHH
Q 045262 219 LLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQ 298 (594)
Q Consensus 219 ~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~e 298 (594)
....++.+|-.-+.+|..++.+.....++=...|..+.-.++|+..+..-.++++..++.++..|+.. ..+...|+.
T Consensus 1003 ~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~rkle~el~~~~e~~~~~~~~~~el~~~---l~kke~El~ 1079 (1930)
T KOG0161|consen 1003 AEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKRKLEGELKDLQESIEELKKQKEELDNQ---LKKKESELS 1079 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 33333333333344444444444444444444555555555666666666666677677777777654 234445666
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhcc
Q 045262 299 SRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHADKCA 378 (594)
Q Consensus 299 kKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQVEqLq~dRfs 378 (594)
.-..++.++...+..|.+..++||-++.+|.-.|++-...-+ ++.....-|.++.++|..+++.. .+.-.
T Consensus 1080 ~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~---------K~ek~r~dL~~ele~l~~~Lee~-~~~t~ 1149 (1930)
T KOG0161|consen 1080 QLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRA---------KAERQRRDLSEELEELKEELEEQ-GGTTA 1149 (1930)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHH-hhhHH
Confidence 666667777777777777777777777777666665544332 22222333444455555544433 22222
Q ss_pred hhhHHHHHHH-----HHHHHHHHHhhcCC
Q 045262 379 GVEELVYLKW-----INACLRYELRNYQP 402 (594)
Q Consensus 379 eVEELVYLRW-----VNACLR~ELrn~q~ 402 (594)
-..|+=-.|| +++=|+.|-.++.+
T Consensus 1150 ~q~e~~~k~e~e~~~l~~~leee~~~~e~ 1178 (1930)
T KOG0161|consen 1150 AQLELNKKREAEVQKLRRDLEEETLDHEA 1178 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 2233333333 35666666666554
No 25
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=96.91 E-value=0.037 Score=58.49 Aligned_cols=101 Identities=23% Similarity=0.333 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHH-HHHHHHH--------HhhhhhhHHHHHHHHHHHHHHHHHHH
Q 045262 166 EQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIV-MELQNRL--------KLNNMEGRLLNLKIESLQADNRRLEA 236 (594)
Q Consensus 166 e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v-~ELe~~L--------~~k~~Ei~~L~~kI~sLE~En~RLq~ 236 (594)
++++..-+..|..|+ -|..+..+||..|.--..++.- ..-...+ .-+-..++.|..|+..||.||..|+.
T Consensus 103 e~~L~~~~e~v~qLr-HeL~~kdeLL~~ys~~~ee~~~~~~~~~~~~~~~~~~~~~~~~~le~Lq~Klk~LEeEN~~LR~ 181 (306)
T PF04849_consen 103 EEQLGAALEQVEQLR-HELSMKDELLQIYSNDDEESEPESSESTPLRRNESSLSSQKCIQLEALQEKLKSLEEENEQLRS 181 (306)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHhcCcHhhhcccccCCCccccccccccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555554 3666666676666532211110 0000000 01224579999999999999999998
Q ss_pred HHHHHHhH---------------HHHHHHHHHHHHHHHHHHHHHHH
Q 045262 237 QVADHAKT---------------VSELEAAKTKIKLLKKKLRTEAE 267 (594)
Q Consensus 237 qv~e~~~v---------------~~ELE~ar~kir~LqkKl~~~a~ 267 (594)
++..+..- +++|..|..+|..|..-|-+..+
T Consensus 182 Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~E 227 (306)
T PF04849_consen 182 EASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTE 227 (306)
T ss_pred HHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHH
Confidence 88877633 34555555555555544444433
No 26
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=96.83 E-value=0.71 Score=47.21 Aligned_cols=207 Identities=21% Similarity=0.295 Sum_probs=97.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--------hhhHHHHHHHH-------HHHHhhhhhhHHHHHHHHH
Q 045262 162 KDDCEQEVKNLKNMVQMLQDREKNLEVELLEYYGL--------KEQETIVMELQ-------NRLKLNNMEGRLLNLKIES 226 (594)
Q Consensus 162 ~~d~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~L--------KEQEa~v~ELe-------~~L~~k~~Ei~~L~~kI~s 226 (594)
...++.||..||..|..+..--.+|+.++--+..- .+.-+....|+ ..|...+.....|..+|..
T Consensus 49 ~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~ 128 (312)
T PF00038_consen 49 KEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQS 128 (312)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHH
Confidence 34468899999999998887777777766544432 11222233333 3333333333344444444
Q ss_pred HHHHHHHHHHHHHH-HHhHHHHH------H-------HHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHH----
Q 045262 227 LQADNRRLEAQVAD-HAKTVSEL------E-------AAKTKIKLLKKKLRTEAEQNREQILA-VQERVTKLQEQA---- 287 (594)
Q Consensus 227 LE~En~RLq~qv~e-~~~v~~EL------E-------~ar~kir~LqkKl~~~a~q~K~qi~~-Lkq~v~~Lq~~E---- 287 (594)
|+.|..-+...-.+ ...+..++ + ..-..++.++.+....+.+++.++.. .+.++..++..-
T Consensus 129 L~eEl~fl~~~heeEi~~L~~~~~~~~~~e~~~~~~~dL~~~L~eiR~~ye~~~~~~~~e~e~~y~~k~~~l~~~~~~~~ 208 (312)
T PF00038_consen 129 LKEELEFLKQNHEEEIEELREQIQSSVTVEVDQFRSSDLSAALREIRAQYEEIAQKNREELEEWYQSKLEELRQQSEKSS 208 (312)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTT----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhhhhccccccceeecccccccchhhhhhHHHHHHHHHhhhhhhhhhhcccccccccccccccc
Confidence 44443333211110 11111111 0 01233455555555566666554321 122333332210
Q ss_pred HHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHH
Q 045262 288 HKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSK 367 (594)
Q Consensus 288 ~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~k 367 (594)
........|+-.-...+..|..++..|+..|..|+....+|-.++........ ..+..+..++..+|........
T Consensus 209 ~~~~~~~~E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~-----~~i~~le~el~~l~~~~~~~~~ 283 (312)
T PF00038_consen 209 EELESAKEELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQ-----AEIAELEEELAELREEMARQLR 283 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhHhHHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHH-----HhhhccchhHHHHHHHHHHHHH
Confidence 00111122333333445667777777777777777777666655554433322 2233344455555555555555
Q ss_pred HHHHHh
Q 045262 368 EVEKLH 373 (594)
Q Consensus 368 QVEqLq 373 (594)
+++.|-
T Consensus 284 ey~~Ll 289 (312)
T PF00038_consen 284 EYQELL 289 (312)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 27
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.82 E-value=0.6 Score=56.30 Aligned_cols=17 Identities=29% Similarity=0.517 Sum_probs=6.7
Q ss_pred HHHHHhhHHHHHHHHHH
Q 045262 356 QRLREENTSLSKEVEKL 372 (594)
Q Consensus 356 ~~LR~~NedL~kQVEqL 372 (594)
..||+.-+.-+.++..|
T Consensus 446 ~~l~k~i~~~~~~l~~l 462 (1074)
T KOG0250|consen 446 LQLRKKIENISEELKDL 462 (1074)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444434444333333
No 28
>PRK01156 chromosome segregation protein; Provisional
Probab=96.77 E-value=1.7 Score=50.91 Aligned_cols=14 Identities=7% Similarity=0.344 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHH
Q 045262 167 QEVKNLKNMVQMLQ 180 (594)
Q Consensus 167 ~EI~~LR~lVeeLq 180 (594)
.+|..|.+-++.+.
T Consensus 483 ~~i~~l~~~~~~l~ 496 (895)
T PRK01156 483 EKIREIEIEVKDID 496 (895)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444443333
No 29
>PLN03188 kinesin-12 family protein; Provisional
Probab=96.76 E-value=0.37 Score=58.94 Aligned_cols=75 Identities=20% Similarity=0.220 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHH-HHHHHHHHHHHhhHHHHHHHHHHhhhhcchhhH
Q 045262 308 EAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGERE-ALNEMSQRLREENTSLSKEVEKLHADKCAGVEE 382 (594)
Q Consensus 308 E~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~-~i~ee~~~LR~~NedL~kQVEqLq~dRfseVEE 382 (594)
|-|..=||.-|+.||-|.|+-+.-..+|=-....+-|.++++ -+++.+...-++|+++-||+|.|+..+-.++.=
T Consensus 1172 eker~~~~~enk~l~~qlrdtaeav~aagellvrl~eaeea~~~a~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t 1247 (1320)
T PLN03188 1172 EKERRYLRDENKSLQAQLRDTAEAVQAAGELLVRLKEAEEALTVAQKRAMDAEQEAAEAYKQIDKLKRKHENEIST 1247 (1320)
T ss_pred HHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777888899999998864433333322222223433432 234557778899999999999999998666543
No 30
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=96.69 E-value=0.35 Score=53.48 Aligned_cols=184 Identities=25% Similarity=0.284 Sum_probs=100.4
Q ss_pred chHHHHHHHHHHHHHHHH-------HHHHHHHHHH----Hhhhchhh----HHH-----------HHHHHHHHH-hhhhh
Q 045262 164 DCEQEVKNLKNMVQMLQD-------REKNLEVELL----EYYGLKEQ----ETI-----------VMELQNRLK-LNNME 216 (594)
Q Consensus 164 d~e~EI~~LR~lVeeLqE-------RE~~LE~ELL----Eyy~LKEQ----Ea~-----------v~ELe~~L~-~k~~E 216 (594)
|++.-|.-|.+-|.+|.. |-.+|..|-+ .|.-|.|| |.. ..|+.-.++ .+..+
T Consensus 219 di~~kv~flerkv~eledd~~~~gd~~SrlkqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReasle 298 (502)
T KOG0982|consen 219 DIERKVRFLERKVQELEDDQNIAGDRSSRLKQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREASLE 298 (502)
T ss_pred hHHHHHHHHHHHHHHhhcchhccccchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344456777777877766 4444444432 34444433 322 222222222 46678
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhc
Q 045262 217 GRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAK----TKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAA 292 (594)
Q Consensus 217 i~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar----~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~ 292 (594)
++.|.+++-.|+.||.+|+..++.......+|+.-+ -.+..|.-++.-+.+--+..-..|.+ +|.+
T Consensus 299 ~Enlqmr~qqleeentelRs~~arlksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrr----fq~e------ 368 (502)
T KOG0982|consen 299 KENLQMRDQQLEEENTELRSLIARLKSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRR----FQEE------ 368 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHh------
Confidence 899999999999999999988887777666664322 22333333333322222222222222 2211
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 045262 293 IDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKL 372 (594)
Q Consensus 293 ~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQVEqL 372 (594)
-.... -=++|||+....||..|..++.- -.. ..+.-+-.+..++..||+.|-.|..|=|.|
T Consensus 369 --------keatq---ELieelrkelehlr~~kl~~a~p-----~rg---rsSaRe~eleqevkrLrq~nr~l~eqneel 429 (502)
T KOG0982|consen 369 --------KEATQ---ELIEELRKELEHLRRRKLVLANP-----VRG---RSSAREIELEQEVKRLRQPNRILSEQNEEL 429 (502)
T ss_pred --------hHHHH---HHHHHHHHHHHHHHHHHHHhhcc-----ccC---chhHHHHHHHHHHHHhccccchhhhhhhhh
Confidence 11122 23678888888888887665311 000 112222235566777777777777777777
Q ss_pred hhhh
Q 045262 373 HADK 376 (594)
Q Consensus 373 q~dR 376 (594)
++-=
T Consensus 430 ngti 433 (502)
T KOG0982|consen 430 NGTI 433 (502)
T ss_pred hhhh
Confidence 6543
No 31
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.66 E-value=0.11 Score=61.73 Aligned_cols=167 Identities=22% Similarity=0.243 Sum_probs=105.0
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 045262 150 DVENPRPCRGSEKDDCEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQA 229 (594)
Q Consensus 150 ~~~~~~a~~~~e~~d~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~ 229 (594)
-|.+|....+.+..+...||..| +.+=.+|+.||-|-. ..+..|+++|....+|++.|+..+..+..
T Consensus 160 ~~~sp~~~~~~~~~hL~velAdl-------e~kir~LrqElEEK~------enll~lr~eLddleae~~klrqe~~e~l~ 226 (1195)
T KOG4643|consen 160 LYKSPYDIVVKKNLHLEVELADL-------EKKIRTLRQELEEKF------ENLLRLRNELDDLEAEISKLRQEIEEFLD 226 (1195)
T ss_pred CCCCcchhhcchhHHHHHHHHHH-------HHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455444444444455555555 455556667766655 34889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHH-------HHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHhhcCChhHHH
Q 045262 230 DNRRLEAQVADHAKTVSELEAAKTKIKL-------LKKKLRTEAEQN---REQILAVQERVTKLQEQAHKAAAIDPDTQS 299 (594)
Q Consensus 230 En~RLq~qv~e~~~v~~ELE~ar~kir~-------LqkKl~~~a~q~---K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ek 299 (594)
+..|...-..+..+++..-|+|-.+-++ ++-++...-+.+ -+.-.||+.|+-++.++-+- +....+|=+
T Consensus 227 ea~ra~~yrdeldalre~aer~d~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~-~tleseiiq 305 (1195)
T KOG4643|consen 227 EAHRADRYRDELDALREQAERPDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEG-ATLESEIIQ 305 (1195)
T ss_pred HHHhhhhhhhHHHHHHHhhhcCCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcccc-CChHHHHHH
Confidence 9999998888888888876665322211 222332222222 12345667777776665322 333344444
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhHhHH
Q 045262 300 RLQRLKVLEAEAEDLRKSNMKLQLENSQLAR 330 (594)
Q Consensus 300 Klq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~ 330 (594)
=-|.+.+|+.+--=.|....+|+.||..|-+
T Consensus 306 lkqkl~dm~~erdtdr~kteeL~eEnstLq~ 336 (1195)
T KOG4643|consen 306 LKQKLDDMRSERDTDRHKTEELHEENSTLQV 336 (1195)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 4466777777766666666777777666533
No 32
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.58 E-value=0.8 Score=56.28 Aligned_cols=39 Identities=15% Similarity=0.093 Sum_probs=18.9
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 045262 199 QETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQ 237 (594)
Q Consensus 199 QEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~q 237 (594)
+......|+.+|.....++..+...|..++.+...|...
T Consensus 879 ~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~ 917 (1311)
T TIGR00606 879 NLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETF 917 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 333445555555555555555555554444444444333
No 33
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.57 E-value=0.99 Score=51.31 Aligned_cols=129 Identities=21% Similarity=0.301 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 045262 201 TIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERV 280 (594)
Q Consensus 201 a~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v 280 (594)
..+..|+..|.....+.+.|..+...+...++.|..+ ...+..+++.++.+|+.|.-.+.....+.+++-..+. ++
T Consensus 171 ~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E---~~~L~~q~~e~~~ri~~LEedi~~l~qk~~E~e~~~~-~l 246 (546)
T PF07888_consen 171 EEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEE---RESLKEQLAEARQRIRELEEDIKTLTQKEKEQEKELD-KL 246 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 3455666666666666666666666666655555433 3345556666777777777666655555533221111 11
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhh
Q 045262 281 TKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLE 339 (594)
Q Consensus 281 ~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~ 339 (594)
..++..-+ ....++. +++++.-.++....+.+..++.++..|...|..++.++
T Consensus 247 k~~~~elE---q~~~eLk---~rLk~~~~~~~~~~~~~~~~~~e~e~LkeqLr~~qe~l 299 (546)
T PF07888_consen 247 KELKAELE---QLEAELK---QRLKETVVQLKQEETQAQQLQQENEALKEQLRSAQEQL 299 (546)
T ss_pred HHHHHHHH---HHHHHHH---HHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 11211100 0001122 34555555555555556667777766666666665544
No 34
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.57 E-value=0.62 Score=47.98 Aligned_cols=111 Identities=29% Similarity=0.370 Sum_probs=64.2
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 045262 205 ELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQ 284 (594)
Q Consensus 205 ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq 284 (594)
....-|....+++..++..+..++.+...|+.|+..+ ..+|..++.+++.++.++ .+-.+-.++..|...+..++
T Consensus 28 ~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~---e~ei~~~r~r~~~~e~kl--~~v~~~~e~~aL~~E~~~ak 102 (239)
T COG1579 28 EIRKALKKAKAELEALNKALEALEIELEDLENQVSQL---ESEIQEIRERIKRAEEKL--SAVKDERELRALNIEIQIAK 102 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHH
Confidence 3344455555666667777777777766666666544 356666777777777777 44444556666666666666
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhh
Q 045262 285 EQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQM 337 (594)
Q Consensus 285 ~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~ 337 (594)
.+ ...||.++.+|......|+.+.-.|..++...+.
T Consensus 103 ~r-----------------~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~ 138 (239)
T COG1579 103 ER-----------------INSLEDELAELMEEIEKLEKEIEDLKERLERLEK 138 (239)
T ss_pred HH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44 3444555555554444555444444444444443
No 35
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=96.51 E-value=0.22 Score=56.30 Aligned_cols=164 Identities=23% Similarity=0.205 Sum_probs=102.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH------------HHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHH
Q 045262 214 NMEGRLLNLKIESLQADNRRLEAQVADHAKTVS------------ELEAAKTKIKLLK---KKLRTEAEQNREQILAVQE 278 (594)
Q Consensus 214 ~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~------------ELE~ar~kir~Lq---kKl~~~a~q~K~qi~~Lkq 278 (594)
|..+..+-.+|-.||+||.+|+.++.....+.. ||..||.-+++-. .+++.+..+.+.++.-++.
T Consensus 48 NDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~ 127 (546)
T KOG0977|consen 48 NDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLREELKELRK 127 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 344555666788889999999888876655442 6666666666653 4566667777777777777
Q ss_pred HHHHHHHHHHHhhcCChhHHHH--HHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhc---chhhhHHHHHHH
Q 045262 279 RVTKLQEQAHKAAAIDPDTQSR--LQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEIS---VLEDGEREALNE 353 (594)
Q Consensus 279 ~v~~Lq~~E~e~~~~d~E~ekK--lq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~---~~E~~ev~~i~e 353 (594)
++.+.+.. ..-+..+.+ +.++.++|.|+.=+++..+.|..++..|..-..--...+.. .+++..+-.
T Consensus 128 ~~~~~~k~-----~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr--- 199 (546)
T KOG0977|consen 128 KLEKAEKE-----RRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLR--- 199 (546)
T ss_pred HHHHHHHH-----HhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH---
Confidence 77765432 111222333 56789999999999999999999988884432222221110 111111111
Q ss_pred HHHHHHHhhHHHHHHHHHHhhhhcchhhHHHHHH
Q 045262 354 MSQRLREENTSLSKEVEKLHADKCAGVEELVYLK 387 (594)
Q Consensus 354 e~~~LR~~NedL~kQVEqLq~dRfseVEELVYLR 387 (594)
..+-....+|..+|+-++..+-.+++|+.-..
T Consensus 200 --~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~ 231 (546)
T KOG0977|consen 200 --VDLQNRVQTLLEELAFLKRIHKQEIEEERRKA 231 (546)
T ss_pred --HHHHhHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 11223456788888888888888877765443
No 36
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=96.44 E-value=0.53 Score=56.73 Aligned_cols=156 Identities=19% Similarity=0.219 Sum_probs=77.8
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-chhhHH-------HHHHHHHHHHhhhhhhHHHHHH-------HH
Q 045262 161 EKDDCEQEVKNLKNMVQMLQDREKNLEVELLEYYG-LKEQET-------IVMELQNRLKLNNMEGRLLNLK-------IE 225 (594)
Q Consensus 161 e~~d~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~-LKEQEa-------~v~ELe~~L~~k~~Ei~~L~~k-------I~ 225 (594)
.....+.+|..|...+..|+.....|+.++.++.. |++=+. .+..+++++..+..|+..|.-. |.
T Consensus 655 ~~~s~d~~ie~le~e~~~l~~~~~~l~~~~~~~e~~l~e~~~~~~~l~~~~~q~~~~~~~~~~em~el~n~~e~~~~~~~ 734 (1074)
T KOG0250|consen 655 DEFSFDDEIEDLEREASRLQKEILELENQRREAEKNLEELEKKLRELSEHIEQIKRRIRKKRAEMTELKNTAEEKQVDIS 734 (1074)
T ss_pred cchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcchh
Confidence 44455667777777776666655555555555532 233333 3445555666666666666553 22
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHH-------
Q 045262 226 SLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQ------- 298 (594)
Q Consensus 226 sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~e------- 298 (594)
.++.+.........++..-...++.++.++..++.+.+..-+.-.+.-..|++...+|++.+.+....+..+.
T Consensus 735 ~~~~l~~ei~~~~~eIe~~~~~~e~l~~e~e~~~~e~~e~~~~~~~~~~~l~~e~~~l~~l~~el~~r~dk~~s~e~~~~ 814 (1074)
T KOG0250|consen 735 KLEDLAREIKKKEKEIEEKEAPLEKLKEELEHIELEAQELEEYYAAGREKLQGEISKLDALKEELKLREDKLRSAEDEKR 814 (1074)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhhhhhh
Confidence 2222222222222333333333344444444444444444444444556666677777665544433332222
Q ss_pred -----H--HHHHHHHHHHHHHHHHH
Q 045262 299 -----S--RLQRLKVLEAEAEDLRK 316 (594)
Q Consensus 299 -----k--Klq~lkeLE~Ev~ELRr 316 (594)
. .++.++..|++++.+..
T Consensus 815 HyE~~~K~~l~~l~~~E~~~~~~e~ 839 (1074)
T KOG0250|consen 815 HYEDKLKSRLEELKQKEVEKVNLEE 839 (1074)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhhhc
Confidence 2 35566666666655544
No 37
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.41 E-value=0.52 Score=48.51 Aligned_cols=153 Identities=20% Similarity=0.289 Sum_probs=74.1
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----HHHHHHHHHhHHH
Q 045262 198 EQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLK-----KKLRTEAEQNREQ 272 (594)
Q Consensus 198 EQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~Lq-----kKl~~~a~q~K~q 272 (594)
++...+..+++++...+..+.-+..+++.|+-+..+++..+.+.. +.+..++.++.... +.+..+...++.+
T Consensus 28 ~~~~~l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r---~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r 104 (239)
T COG1579 28 EIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIR---ERIKRAEEKLSAVKDERELRALNIEIQIAKER 104 (239)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 555556666666666666666666666666666666665544332 33333333332211 3333334444444
Q ss_pred HHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHH
Q 045262 273 ILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALN 352 (594)
Q Consensus 273 i~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ 352 (594)
+..|..++..+.. .+.+|+.++..++.....++..-.++-.+++.+-..+.-. .-....
T Consensus 105 ~~~le~el~~l~~-----------------~~~~l~~~i~~l~~~~~~~e~~~~e~~~~~e~e~~~i~e~----~~~~~~ 163 (239)
T COG1579 105 INSLEDELAELME-----------------EIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREE----GQELSS 163 (239)
T ss_pred HHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH
Confidence 4444444444332 2455666666666666666655555544444443333210 001111
Q ss_pred HHHHHHHHhhHHHHHHHHHHhh
Q 045262 353 EMSQRLREENTSLSKEVEKLHA 374 (594)
Q Consensus 353 ee~~~LR~~NedL~kQVEqLq~ 374 (594)
+....-.+.+.+|...+|.+++
T Consensus 164 ~~~~L~~~l~~ell~~yeri~~ 185 (239)
T COG1579 164 KREELKEKLDPELLSEYERIRK 185 (239)
T ss_pred HHHHHHHhcCHHHHHHHHHHHh
Confidence 2223333456666666666654
No 38
>PRK09039 hypothetical protein; Validated
Probab=96.35 E-value=0.24 Score=52.80 Aligned_cols=100 Identities=24% Similarity=0.288 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHhhc
Q 045262 216 EGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLR---TEAEQNREQILAVQERVTKLQEQAHKAAA 292 (594)
Q Consensus 216 Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~---~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~ 292 (594)
+|..++..+..+++++.+|+.+.+.... ....+..+...|++++. .....+..++..|+++++.|+.+
T Consensus 82 ~l~~l~~~l~~a~~~r~~Le~~~~~~~~---~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Q------ 152 (343)
T PRK09039 82 SVANLRASLSAAEAERSRLQALLAELAG---AGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQ------ 152 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhh---hcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH------
Confidence 4444444445555555555554442211 11122233333333333 22233344555566666665544
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhh
Q 045262 293 IDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLEST 335 (594)
Q Consensus 293 ~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sA 335 (594)
+..|+.++.+.....++.|.+..+|-.+|+.|
T Consensus 153 -----------la~le~~L~~ae~~~~~~~~~i~~L~~~L~~a 184 (343)
T PRK09039 153 -----------LAALEAALDASEKRDRESQAKIADLGRRLNVA 184 (343)
T ss_pred -----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555554444443
No 39
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.34 E-value=0.34 Score=45.91 Aligned_cols=118 Identities=18% Similarity=0.263 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 045262 201 TIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERV 280 (594)
Q Consensus 201 a~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v 280 (594)
+.+..|+.+...+..+|.-|..++..||.+...++.++.+......+-+-....+.-|+++|+.. .+++
T Consensus 21 ~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~L-----------Eeel 89 (143)
T PF12718_consen 21 AKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLL-----------EEEL 89 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHH-----------HHHH
Confidence 44667777777888899999999999999999999998888888887776666666666655533 3332
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhh
Q 045262 281 TKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLE 339 (594)
Q Consensus 281 ~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~ 339 (594)
...... +..-...+++.++.+.++-|..+.|+.+...+-.|++..+.++
T Consensus 90 e~ae~~----------L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~k~ 138 (143)
T PF12718_consen 90 EEAEKK----------LKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEEKY 138 (143)
T ss_pred HHHHHH----------HHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 222221 2222344677778888888888888888777766666555443
No 40
>PRK01156 chromosome segregation protein; Provisional
Probab=96.23 E-value=3.7 Score=48.25 Aligned_cols=84 Identities=10% Similarity=0.095 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 045262 166 EQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTV 245 (594)
Q Consensus 166 e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~ 245 (594)
..+|..|..-+++|.++...|+.++-++-...+... ..--++|..+..++..+..++..+..+...|+.....|..+.
T Consensus 475 ~~~i~~l~~~i~~l~~~~~~l~~~~~~~~~~~~~l~--~~~~~~l~~~~~~~~~l~~~l~~~~~~l~~le~~~~~~~~l~ 552 (895)
T PRK01156 475 NEKKSRLEEKIREIEIEVKDIDEKIVDLKKRKEYLE--SEEINKSINEYNKIESARADLEDIKIKINELKDKHDKYEEIK 552 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777777777766655322221100 011122333344444555555555555555555555555555
Q ss_pred HHHHHH
Q 045262 246 SELEAA 251 (594)
Q Consensus 246 ~ELE~a 251 (594)
.++...
T Consensus 553 ~~~~~~ 558 (895)
T PRK01156 553 NRYKSL 558 (895)
T ss_pred HHHHHh
Confidence 555433
No 41
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=96.23 E-value=2.6 Score=46.74 Aligned_cols=79 Identities=27% Similarity=0.326 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHhH
Q 045262 166 EQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQV-ADHAKT 244 (594)
Q Consensus 166 e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv-~e~~~v 244 (594)
..||..+...+..-+.+-..|+.+ ||+++..+..++.+|..-...++.++..|..++...+.|+.|- .+-..+
T Consensus 44 q~ei~~~~~~i~~~~~~~~kL~~~------lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l~~q~r~qr~~L 117 (420)
T COG4942 44 QKEIAALEKKIREQQDQRAKLEKQ------LKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALEVQEREQRRRL 117 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888888888888888876 5788999999999999999999999999999998888888666 333333
Q ss_pred HHHHHH
Q 045262 245 VSELEA 250 (594)
Q Consensus 245 ~~ELE~ 250 (594)
.+.|.+
T Consensus 118 a~~L~A 123 (420)
T COG4942 118 AEQLAA 123 (420)
T ss_pred HHHHHH
Confidence 334433
No 42
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.19 E-value=0.0013 Score=75.22 Aligned_cols=229 Identities=22% Similarity=0.257 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hchhhHHHHHHHHHHHHhhhhhh------HHHHHHHHHHHHHHHHHH
Q 045262 166 EQEVKNLKNMVQMLQDREKNLEVELLEYY----GLKEQETIVMELQNRLKLNNMEG------RLLNLKIESLQADNRRLE 235 (594)
Q Consensus 166 e~EI~~LR~lVeeLqERE~~LE~ELLEyy----~LKEQEa~v~ELe~~L~~k~~Ei------~~L~~kI~sLE~En~RLq 235 (594)
..++..|+..+..++.+-...+.++-++. .+.+.+..+.+|+.+|..-.... ......|..||.+|.+|.
T Consensus 191 ~~e~~~l~~~le~~~~~~~e~e~~~~~L~~~q~~~~e~e~~i~~Le~el~~~~~~~~i~k~l~~ql~~i~~LE~en~~l~ 270 (722)
T PF05557_consen 191 ESELEELKEQLEELQSELQEAEQQLQELQASQASLAEAEQKIKELEAELKDQESDAEINKELKEQLAHIRELEKENRRLR 270 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544433333333331 23344666666666555332221 222345788999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHH
Q 045262 236 AQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLR 315 (594)
Q Consensus 236 ~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELR 315 (594)
+++..+..+.+-.+.++.+++-|++|++.. +...+++..++=++..|+.+-..-..-....--....-.+|-..+..||
T Consensus 271 ~Elk~Lr~~~~n~elLeEe~~sLq~kl~~~-E~~~~el~~lq~e~~~Le~el~sW~sl~~~~~~~~~sPe~l~~~l~~lq 349 (722)
T PF05557_consen 271 EELKHLRQSQENVELLEEEKRSLQRKLERL-EELEEELAELQLENEKLEDELNSWESLLQDIGLEFDSPEDLARALVQLQ 349 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHH
Confidence 999999999999999999999999998754 4445555555555555544311100000000001111122333334444
Q ss_pred HHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHH
Q 045262 316 KSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHADKCAGVEELVYLKWINACLRY 395 (594)
Q Consensus 316 r~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQVEqLq~dRfseVEELVYLRWVNACLR~ 395 (594)
..+.-|..+++.+...+...+..+..+ + .+...+..++..++.....+.+.+..|+.-+.--++|.=|||=+=.+.--
T Consensus 350 ~~~~~L~ek~g~~~~~~~~l~~~~~~L-e-~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~ 427 (722)
T PF05557_consen 350 QENASLTEKLGSLQSELRELEEEIQEL-E-QEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDK 427 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 444444444433332222222211111 1 12233445566666666677777888888888888888888866555444
Q ss_pred HH
Q 045262 396 EL 397 (594)
Q Consensus 396 EL 397 (594)
|.
T Consensus 428 e~ 429 (722)
T PF05557_consen 428 EE 429 (722)
T ss_dssp --
T ss_pred hh
Confidence 44
No 43
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.15 E-value=3.1 Score=46.63 Aligned_cols=158 Identities=18% Similarity=0.175 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH-------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 201 TIVMELQNRLKLNNMEGRLLNLKIESLQADNRRL-------------EAQVADHAKTVSELEAAKTKIKLLKKKLRTEAE 267 (594)
Q Consensus 201 a~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RL-------------q~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~ 267 (594)
..|.+||..|.+.+.||..-..--..|.++.++| .+-+.-..+...++-..-..-++||+++....+
T Consensus 345 ~~IqeleqdL~a~~eei~~~eel~~~Lrsele~lp~dv~rk~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se 424 (521)
T KOG1937|consen 345 RRIQELEQDLEAVDEEIESNEELAEKLRSELEKLPDDVQRKVYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESE 424 (521)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5588999999999999985555555555554443 344445555566666677778889999999888
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHH---HHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchh
Q 045262 268 QNREQILAVQERVTKLQEQAHKAAAIDPDTQSR---LQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLE 344 (594)
Q Consensus 268 q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekK---lq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E 344 (594)
+.-+......+.|-+ .++.|+..-.- +.++..-=.++.|+=+.+-.+-.|-++|-.++..-+.+..-
T Consensus 425 ~L~Rsfavtdellf~-------sakhddhvR~aykllt~iH~nc~ei~E~i~~tg~~~revrdlE~qI~~E~~k~~l--- 494 (521)
T KOG1937|consen 425 ALNRSFAVTDELLFM-------SAKHDDHVRLAYKLLTRIHLNCMEILEMIRETGALKREVRDLESQIYVEEQKQYL--- 494 (521)
T ss_pred HHhhhHHHHHHHHHH-------HhccCHHHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHhHHHHHHHH---
Confidence 888888777766543 23444443322 33445555889999999999999999999998887766542
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHH
Q 045262 345 DGEREALNEMSQRLREENTSLSKEV 369 (594)
Q Consensus 345 ~~ev~~i~ee~~~LR~~NedL~kQV 369 (594)
.-.++|.+..+.+|+.|+.|.++|
T Consensus 495 -~slEkl~~Dyqairqen~~L~~~i 518 (521)
T KOG1937|consen 495 -KSLEKLHQDYQAIRQENDQLFSEI 518 (521)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 223568888899999999998887
No 44
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.10 E-value=6.3 Score=49.79 Aligned_cols=169 Identities=12% Similarity=0.136 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 045262 169 VKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSEL 248 (594)
Q Consensus 169 I~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~EL 248 (594)
+.++...+.+|..+...|+.+.-.+..-++....+..+...+......++.|...+...+.....++. +...+..++
T Consensus 309 L~rI~diL~ELe~rL~kLEkQaEkA~kyleL~ee~lr~q~ei~~l~~~LeELee~Lee~eeeLeelee---eleeleeEl 385 (1486)
T PRK04863 309 LVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADE---QQEENEARA 385 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 44555556666666666666555444333332222222233333333333333333333333222222 223333445
Q ss_pred HHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 045262 249 EAAKTKIKLLKKKLR---TEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLEN 325 (594)
Q Consensus 249 E~ar~kir~LqkKl~---~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EK 325 (594)
+.+..++..|+.++. ........++..+++.+..+..-+.=-...+...+.=...+..++..+.+++....+|+.+.
T Consensus 386 eelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~kL 465 (1486)
T PRK04863 386 EAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQKL 465 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555443 34444455666666777666654321111122222222345667777777777777777776
Q ss_pred hHhHHhhhhhhhhhh
Q 045262 326 SQLARRLESTQMLEI 340 (594)
Q Consensus 326 reL~~KL~sAe~~~~ 340 (594)
..+-..++.-+...+
T Consensus 466 ~~lea~leql~~~~~ 480 (1486)
T PRK04863 466 SVAQAAHSQFEQAYQ 480 (1486)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666666655554443
No 45
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.08 E-value=3.4 Score=52.09 Aligned_cols=183 Identities=17% Similarity=0.214 Sum_probs=89.0
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-------HHHH---HHHHHHHHHhHHHHHHHHHH
Q 045262 210 LKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKI-------KLLK---KKLRTEAEQNREQILAVQER 279 (594)
Q Consensus 210 L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~ki-------r~Lq---kKl~~~a~q~K~qi~~Lkq~ 279 (594)
+.....++..+..++..++.+...++.++..+...+..++.|+.=| ..|+ ..+.....+...++..++++
T Consensus 385 leelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~~LenF~aklee~e~qL~elE~k 464 (1486)
T PRK04863 385 AEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAEDWLEEFQAKEQEATEELLSLEQK 464 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444445555556666677777777777777665 2333 33334444444555555555
Q ss_pred HHHHHHHHH-------H----hhcCC--------hhHHHHHHHHHHHHHHHHHHHHHhHHHHH---HhhHhHHhhhhhhh
Q 045262 280 VTKLQEQAH-------K----AAAID--------PDTQSRLQRLKVLEAEAEDLRKSNMKLQL---ENSQLARRLESTQM 337 (594)
Q Consensus 280 v~~Lq~~E~-------e----~~~~d--------~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~---EKreL~~KL~sAe~ 337 (594)
...++..-. . ..+.+ -++-......+-+-.-+.-||+...+|+. +-+....-|..+..
T Consensus 465 L~~lea~leql~~~~~~l~~~~Gkv~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~q~~~~~~~~~~~~ 544 (1486)
T PRK04863 465 LSVAQAAHSQFEQAYQLVRKIAGEVSRSEAWDVARELLRRLREQRHLAEQLQQLRMRLSELEQRLRQQQRAERLLAEFCK 544 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555444210 0 00000 11112222223333444455555555555 33444444455544
Q ss_pred hhhcchh-------------------hhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhcchhhHHHHHHHHHH--HHHHH
Q 045262 338 LEISVLE-------------------DGEREALNEMSQRLREENTSLSKEVEKLHADKCAGVEELVYLKWINA--CLRYE 396 (594)
Q Consensus 338 ~~~~~~E-------------------~~ev~~i~ee~~~LR~~NedL~kQVEqLq~dRfseVEELVYLRWVNA--CLR~E 396 (594)
....... +..++.+.+....+|+.-+.|..++.+|.. .|--|+.| ||+.
T Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~qL~~~i~~l~~---------~ap~W~~a~~al~~- 614 (1486)
T PRK04863 545 RLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAA---------RAPAWLAAQDALAR- 614 (1486)
T ss_pred HhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hChHHHhhHHHHHH-
Confidence 3221111 122233444556666666667666666654 45559865 7877
Q ss_pred HhhcCC
Q 045262 397 LRNYQP 402 (594)
Q Consensus 397 Lrn~q~ 402 (594)
|+.++.
T Consensus 615 L~eq~g 620 (1486)
T PRK04863 615 LREQSG 620 (1486)
T ss_pred HHHhcc
Confidence 776654
No 46
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=96.04 E-value=0.028 Score=64.54 Aligned_cols=208 Identities=19% Similarity=0.292 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045262 166 EQEVKNLKNMVQMLQDREKNLEVELLEYY-GLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKT 244 (594)
Q Consensus 166 e~EI~~LR~lVeeLqERE~~LE~ELLEyy-~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v 244 (594)
..+|..|...+..|+..-..+..++.+|. .++.+...+..||+++.+-.-|++.|+.-+.++..|.......-.. ..-
T Consensus 363 ~~~~~~l~~~~~~Le~e~~~l~~~~~~l~~~~~~~~~~~~RLerq~~L~~kE~d~LR~~L~syd~e~~~~~~~~~~-~~~ 441 (722)
T PF05557_consen 363 QSELRELEEEIQELEQEKEQLLKEIEELEASLEALKKLIRRLERQKALATKERDYLRAQLKSYDKEETTMNPSEQD-TQR 441 (722)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccCchhH-HHH
Confidence 44566666677777666555666655553 3455566778888888888889999988888888876555422100 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCC-----hhHHHHHHHHHHHHHHHHHHHHHhH
Q 045262 245 VSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAID-----PDTQSRLQRLKVLEAEAEDLRKSNM 319 (594)
Q Consensus 245 ~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d-----~E~ekKlq~lkeLE~Ev~ELRr~Nk 319 (594)
..+++..-..+.....++.....+....+...++....+.. +....+.. ..+-.-...+..|..++.+|++.+.
T Consensus 442 ~~~~~~l~~~~~~~~~ele~~l~~l~~~l~~~k~~~~~~~~-e~~~~~~~~~~~~~~~~~~~e~~~~L~~~~~~Le~e~~ 520 (722)
T PF05557_consen 442 IKEIEDLEQLVDEYKAELEAQLEELEEELSEQKQRNETLEA-ELKSLKEQLSSNDRSLSSLSEELNELQKEIEELERENE 520 (722)
T ss_dssp -----------------------------------------------------HHCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccchhh-hhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 11111111111111111111112222222222222111111 11100000 0001112345668888888888888
Q ss_pred HHHHHhhHhHHhhhhh----h---h--hhhcchhhhHH---HHHHHHHHHHHHhhHHHHHHHHHHhhh
Q 045262 320 KLQLENSQLARRLEST----Q---M--LEISVLEDGER---EALNEMSQRLREENTSLSKEVEKLHAD 375 (594)
Q Consensus 320 eLQ~EKreL~~KL~sA----e---~--~~~~~~E~~ev---~~i~ee~~~LR~~NedL~kQVEqLq~d 375 (594)
.|+.++..|-.+|..- . . ++-.+..+|.. ..-.+.+..||.+|++|..+|..|..+
T Consensus 521 ~L~~~~~~Le~~l~~~~L~g~~~~~~trVL~lr~NP~~~~~~~k~~~l~~L~~En~~L~~~l~~le~~ 588 (722)
T PF05557_consen 521 RLRQELEELESELEKLTLQGEFNPSKTRVLHLRDNPTSKAEQIKKSTLEALQAENEDLLARLRSLEEG 588 (722)
T ss_dssp HHHHHHHHHHHHHHHHCCCT--BTTTEEEEEESS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHhhhccccCCCCceeeeeCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 8888888888888751 1 1 11111233432 112567999999999999999777544
No 47
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=96.02 E-value=4.5 Score=47.42 Aligned_cols=208 Identities=23% Similarity=0.243 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhch---hhHHHHHHHHHHHH---hhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 045262 166 EQEVKNLKNMVQMLQDREKNLEVELLEYYGLK---EQETIVMELQNRLK---LNNMEGRLLNLKIESLQADNRRLEAQVA 239 (594)
Q Consensus 166 e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LK---EQEa~v~ELe~~L~---~k~~Ei~~L~~kI~sLE~En~RLq~qv~ 239 (594)
..|++.|+..+..+.+.|..=-.+.-.=..++ +++...-+|+...+ .--+|+..-.-.++-+|++|.+|-.|+.
T Consensus 399 ~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ 478 (698)
T KOG0978|consen 399 RAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELR 478 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777777666554333111111122 44444444544444 3346666667777889999999876654
Q ss_pred ----HHHhHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHh----hcCChhHHHHHHHHHHHH
Q 045262 240 ----DHAKTVSELEAAKTKIKLLKKKLRTEAEQ---NREQILAVQERVTKLQEQAHKA----AAIDPDTQSRLQRLKVLE 308 (594)
Q Consensus 240 ----e~~~v~~ELE~ar~kir~LqkKl~~~a~q---~K~qi~~Lkq~v~~Lq~~E~e~----~~~d~E~ekKlq~lkeLE 308 (594)
.+.++..+...+..++++|.........+ .+.+..++...+..|+.++.-- ...-.++.+.-+.+..+=
T Consensus 479 ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~k 558 (698)
T KOG0978|consen 479 EKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKASVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLK 558 (698)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHH
Confidence 46778888899999999998776655443 3555666666666666554211 222355555556666666
Q ss_pred HHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q 045262 309 AEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHAD 375 (594)
Q Consensus 309 ~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQVEqLq~d 375 (594)
-.+.++.+....||.+......+|...+-..+.. ..++.....-..+|-++++.|-+.++.+++.
T Consensus 559 k~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~--~~ele~~~~k~~rleEE~e~L~~kle~~k~~ 623 (698)
T KOG0978|consen 559 KKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAEL--ELELEIEKFKRKRLEEELERLKRKLERLKKE 623 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 6677777777777777777766666666554421 1223333444556666677777777777654
No 48
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.96 E-value=0.98 Score=41.80 Aligned_cols=85 Identities=22% Similarity=0.342 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHH
Q 045262 233 RLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAE 312 (594)
Q Consensus 233 RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ 312 (594)
+.+.++.-++..+..|..+|..+..++.++.........--..|.+.-..+..+ -..|+.++.
T Consensus 46 ~YE~El~~Ha~~~~~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~q-----------------k~~le~e~~ 108 (132)
T PF07926_consen 46 KYERELVKHAEDIKELQQLREELQELQQEINELKAEAESAKAELEESEASWEEQ-----------------KEQLEKELS 108 (132)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-----------------HHHHHHHHH
Confidence 345667777777777777777766666554433333222222222222222222 255999999
Q ss_pred HHHHHhHHHHHHhhHhHHhhhh
Q 045262 313 DLRKSNMKLQLENSQLARRLES 334 (594)
Q Consensus 313 ELRr~NkeLQ~EKreL~~KL~s 334 (594)
++++...+|..+|.=|--+|++
T Consensus 109 ~~~~r~~dL~~QN~lLh~QlE~ 130 (132)
T PF07926_consen 109 ELEQRIEDLNEQNKLLHDQLES 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999988777764
No 49
>PRK11637 AmiB activator; Provisional
Probab=95.96 E-value=3.1 Score=45.07 Aligned_cols=25 Identities=4% Similarity=0.175 Sum_probs=13.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 165 CEQEVKNLKNMVQMLQDREKNLEVE 189 (594)
Q Consensus 165 ~e~EI~~LR~lVeeLqERE~~LE~E 189 (594)
..+++..++..+..++..=..++.+
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~~~~~ 69 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQQQQQ 69 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666665555544444333
No 50
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=95.95 E-value=1.8 Score=46.38 Aligned_cols=122 Identities=24% Similarity=0.292 Sum_probs=87.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------------hchhhHHH---HHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 045262 165 CEQEVKNLKNMVQMLQDREKNLEVELLEYY------------GLKEQETI---VMELQNRLKLNNMEGRLLNLKIESLQA 229 (594)
Q Consensus 165 ~e~EI~~LR~lVeeLqERE~~LE~ELLEyy------------~LKEQEa~---v~ELe~~L~~k~~Ei~~L~~kI~sLE~ 229 (594)
+..|-+.++.|++.|++|=..|+...-++- -.+++..- +.+...+-..-..|++.|..++..++.
T Consensus 21 cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qG 100 (319)
T PF09789_consen 21 CQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQG 100 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467899999999999999888888665443 11233322 445555555666777888888888888
Q ss_pred HHHHHHHHHHH----------------HHhHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHH
Q 045262 230 DNRRLEAQVAD----------------HAKTVSELEAAKTKIKLLKKKLRTEA---EQNREQILAVQERVTKLQEQ 286 (594)
Q Consensus 230 En~RLq~qv~e----------------~~~v~~ELE~ar~kir~LqkKl~~~a---~q~K~qi~~Lkq~v~~Lq~~ 286 (594)
+++-|+..++. ...++.+||.++.++..|++-++... +....+-..-++++.+|..+
T Consensus 101 D~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~lDEkeEl~~ERD~yk~K~~RLN~E 176 (319)
T PF09789_consen 101 DIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSLLDEKEELVTERDAYKCKAHRLNHE 176 (319)
T ss_pred hHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777765554 56678899999999999998887543 44556667777888887654
No 51
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.95 E-value=2 Score=42.79 Aligned_cols=97 Identities=21% Similarity=0.311 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 045262 166 EQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTV 245 (594)
Q Consensus 166 e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~ 245 (594)
-.-|..|+.-|.+++.++...+..+.+. ..|...|..-+..++.|...|+.++..|.+-.
T Consensus 26 L~lIksLKeei~emkk~e~~~~k~m~ei--------------------~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK 85 (201)
T PF13851_consen 26 LELIKSLKEEIAEMKKKEERNEKLMAEI--------------------SQENKRLSEPLKKAEEEVEELRKQLKNYEKDK 85 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457888888888888888777665543 24677788888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 045262 246 SELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQ 286 (594)
Q Consensus 246 ~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~ 286 (594)
..|..++++++.++++++.. +-+-..|.|++..++.+
T Consensus 86 ~~L~~~k~rl~~~ek~l~~L----k~e~evL~qr~~kle~E 122 (201)
T PF13851_consen 86 QSLQNLKARLKELEKELKDL----KWEHEVLEQRFEKLEQE 122 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 99999999888888777654 33445666666666654
No 52
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.94 E-value=0.71 Score=48.57 Aligned_cols=43 Identities=19% Similarity=0.273 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--------HHhhhchhhHHHHHHHHHHHH
Q 045262 167 QEVKNLKNMVQMLQDREKNLEVEL--------LEYYGLKEQETIVMELQNRLK 211 (594)
Q Consensus 167 ~EI~~LR~lVeeLqERE~~LE~EL--------LEyy~LKEQEa~v~ELe~~L~ 211 (594)
.-+..|++-|.+.++-=..++.+. -|||..-.-. -..|.+++.
T Consensus 75 ~~c~EL~~~I~egr~~~~~~E~~~~~~nPpLf~EY~~a~~d~--r~~m~~q~~ 125 (325)
T PF08317_consen 75 FSCRELKKYISEGRQIFEEIEEETYESNPPLFREYYTADPDM--RLLMDNQFQ 125 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHcCCHHH--HHHHHHHHH
Confidence 346677777777777666666663 4888774333 334445544
No 53
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=95.92 E-value=0.37 Score=44.81 Aligned_cols=78 Identities=21% Similarity=0.265 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 045262 201 TIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQE 278 (594)
Q Consensus 201 a~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq 278 (594)
..|-.|...|.....|+-.+...+..|+.+...|.+++.....-..++.....++..|+.+++..-.+--.=+-++++
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGE 93 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGE 93 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 346667777777888888999999999999999999999888888888777777777776666555444333434433
No 54
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=95.86 E-value=0.84 Score=53.56 Aligned_cols=68 Identities=26% Similarity=0.258 Sum_probs=51.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 045262 213 NNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKL 283 (594)
Q Consensus 213 k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~L 283 (594)
|......++.++.+||+=|.-||.||.+..+ .+|..+.|+.+|-|-+......+|.=..+++++=..|
T Consensus 418 k~~~~~~~n~El~sLqSlN~~Lq~ql~es~k---~~e~lq~kneellk~~e~q~~Enk~~~~~~~ekd~~l 485 (861)
T PF15254_consen 418 KTSGSQDCNLELFSLQSLNMSLQNQLQESLK---SQELLQSKNEELLKVIENQKEENKRLRKMFQEKDQEL 485 (861)
T ss_pred ccCCCcccchhhHHHHHHHHHHHHHHHHHHH---hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566899999999999999999999875 4566678999999888888888876655555443333
No 55
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.85 E-value=4 Score=47.16 Aligned_cols=91 Identities=18% Similarity=0.250 Sum_probs=54.7
Q ss_pred CCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhc-hhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 045262 156 PCRGSEKDDCEQEVKNLKNMVQMLQDREKNLEVELLE---YYGL-KEQETIVMELQNRLKLNNMEGRLLNLKIESLQADN 231 (594)
Q Consensus 156 a~~~~e~~d~e~EI~~LR~lVeeLqERE~~LE~ELLE---yy~L-KEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En 231 (594)
+-++.....+..|+.+|+.-++.|.++ |+.++-+ +--| +||+..+.+||..|.....+......-++.|++++
T Consensus 76 a~pse~E~~Lq~E~~~L~kElE~L~~q---lqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~~D~~kLLe~lqsdk 152 (617)
T PF15070_consen 76 AGPSEVEQQLQAEAEHLRKELESLEEQ---LQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQEDRQKLLEQLQSDK 152 (617)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 333333334566778888877777743 2222222 2222 68888899998888877766666666666777666
Q ss_pred HHHHHHHHHHHhHHHHHH
Q 045262 232 RRLEAQVADHAKTVSELE 249 (594)
Q Consensus 232 ~RLq~qv~e~~~v~~ELE 249 (594)
....-.|++-..++.+|.
T Consensus 153 ~t~SRAlsQN~eLK~QL~ 170 (617)
T PF15070_consen 153 ATASRALSQNRELKEQLA 170 (617)
T ss_pred hHHHHHHHhHHHHHHHHH
Confidence 655555555554444443
No 56
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.81 E-value=2.8 Score=51.46 Aligned_cols=76 Identities=18% Similarity=0.100 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhh----hc-chhhhHHHHHHHHHHHHHHhhHHHHHHHHHHh------hh
Q 045262 307 LEAEAEDLRKSNMKLQLENSQLARRLESTQMLE----IS-VLEDGEREALNEMSQRLREENTSLSKEVEKLH------AD 375 (594)
Q Consensus 307 LE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~----~~-~~E~~ev~~i~ee~~~LR~~NedL~kQVEqLq------~d 375 (594)
++-++.+|..++..||..+..|.....--++-+ .- ..-+.+++.+++++..|..+++.+..++..++ ..
T Consensus 579 ~~e~~~~~~d~l~~le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e 658 (1317)
T KOG0612|consen 579 ELEENRDLEDKLSLLEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQE 658 (1317)
T ss_pred HhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 333666777788888877766654322211111 10 11235677888888888888888777665544 45
Q ss_pred hcchhhH
Q 045262 376 KCAGVEE 382 (594)
Q Consensus 376 RfseVEE 382 (594)
+++++|+
T Consensus 659 ~~~~~ek 665 (1317)
T KOG0612|consen 659 RISDSEK 665 (1317)
T ss_pred HHHHHHH
Confidence 5666665
No 57
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=95.80 E-value=2.4 Score=42.60 Aligned_cols=161 Identities=20% Similarity=0.223 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH---
Q 045262 166 EQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHA--- 242 (594)
Q Consensus 166 e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~--- 242 (594)
..|...|+..|.-+.+==.+|-.++...+ -|-.....+=..-++-..|++.|+--+.+||+++.+|.+|..+.-
T Consensus 21 ~~en~kL~~~ve~~ee~na~L~~e~~~L~---~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~ 97 (193)
T PF14662_consen 21 ADENAKLQRSVETAEEGNAQLAEEITDLR---KQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQ 97 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666666666666655544433 232333222222223356889999999999999999998876554
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHh
Q 045262 243 -KTVSELEAAKTKIKLLKKKLRTE---AEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSN 318 (594)
Q Consensus 243 -~v~~ELE~ar~kir~LqkKl~~~---a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~N 318 (594)
.++++++....++..|+...... ..+--.....|+-+|..++.- ...+|+.+..+.+.+.+|..-|+|.|.++
T Consensus 98 q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l---~~~~da~l~e~t~~i~eL~~~ieEy~~~t 174 (193)
T PF14662_consen 98 QSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESL---ICQRDAILSERTQQIEELKKTIEEYRSIT 174 (193)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 34555555555555554333222 222223556777777666543 34577889999999999999999999999
Q ss_pred HHHHHHhhHhHHhh
Q 045262 319 MKLQLENSQLARRL 332 (594)
Q Consensus 319 keLQ~EKreL~~KL 332 (594)
-+|-.+++.|--.|
T Consensus 175 eeLR~e~s~LEeql 188 (193)
T PF14662_consen 175 EELRLEKSRLEEQL 188 (193)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999996665
No 58
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=95.73 E-value=0.0027 Score=72.56 Aligned_cols=224 Identities=23% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh-hchhhHHHHHHHHHHHH---hhhhhhHHHHHHHHHHHHHHHH---HHHHHH
Q 045262 167 QEVKNLKNMVQMLQDREKNLEVELLEYY-GLKEQETIVMELQNRLK---LNNMEGRLLNLKIESLQADNRR---LEAQVA 239 (594)
Q Consensus 167 ~EI~~LR~lVeeLqERE~~LE~ELLEyy-~LKEQEa~v~ELe~~L~---~k~~Ei~~L~~kI~sLE~En~R---Lq~qv~ 239 (594)
.++..|+..++.|++.-.+++..+.+|. .+.+.+..+.+|+.+.. ..+.++..|+..+..|.....| |+..|.
T Consensus 239 ~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~ve 318 (713)
T PF05622_consen 239 VELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEVE 318 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666665556666666554 23344555555554432 3334555555555555444333 334444
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHH-------------HHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHH
Q 045262 240 DHAKTVSELEAAKTKIKLLKKKLRT-------------EAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKV 306 (594)
Q Consensus 240 e~~~v~~ELE~ar~kir~LqkKl~~-------------~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lke 306 (594)
-|-+=.++++..|.+++.|+-+... .+...+.++..+++++..|+.+=.+ .. .+...
T Consensus 319 ~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~l~~-------~~---~~~~~ 388 (713)
T PF05622_consen 319 KYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQKLSE-------ES---RRADK 388 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-------HH---HHHHH
Confidence 4444444444445555444433221 1222355666777777766654211 11 12333
Q ss_pred HHHHHHHHHHHhHHHHHHhhHhHHhhh----------hhhhh----------hhcchhh--hH--HHHHHHHHHHHHHhh
Q 045262 307 LEAEAEDLRKSNMKLQLENSQLARRLE----------STQML----------EISVLED--GE--REALNEMSQRLREEN 362 (594)
Q Consensus 307 LE~Ev~ELRr~NkeLQ~EKreL~~KL~----------sAe~~----------~~~~~E~--~e--v~~i~ee~~~LR~~N 362 (594)
|+.+...|+..+..|+.++..|..-.+ .++.. .+....+ .+ -..+++.+-.|.++|
T Consensus 389 l~~e~~~L~ek~~~l~~eke~l~~e~~~L~e~~eeL~~~~~~~~~l~~~~~~~~~~~~~l~~El~~~~l~erl~rLe~EN 468 (713)
T PF05622_consen 389 LEFENKQLEEKLEALEEEKERLQEERDSLRETNEELECSQAQQEQLSQSGEESSSSGDNLSAELNPAELRERLLRLEHEN 468 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccchhhhccchHHHHHHHHHHHHH
Confidence 444444444444444444444332111 11111 0000000 11 134677788999999
Q ss_pred HHHHHHHHHHhhhhcchhh-HHHHHHHHHHHHHHHHhhc
Q 045262 363 TSLSKEVEKLHADKCAGVE-ELVYLKWINACLRYELRNY 400 (594)
Q Consensus 363 edL~kQVEqLq~dRfseVE-ELVYLRWVNACLR~ELrn~ 400 (594)
..|...++++...++..+. +|-=..-.+.+|.-+.+..
T Consensus 469 k~Lk~~~e~~~~e~~~~L~~~Leda~~~~~~Le~~~~~~ 507 (713)
T PF05622_consen 469 KRLKEKQEESEEEKLEELQSQLEDANRRKEKLEEENREA 507 (713)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999889998888876663 3344455666777666543
No 59
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=95.68 E-value=2.8 Score=51.35 Aligned_cols=198 Identities=18% Similarity=0.328 Sum_probs=90.1
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 162 KDDCEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADH 241 (594)
Q Consensus 162 ~~d~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~ 241 (594)
++.+.+++..+...+..++.+...++.+|-.+ ...+..+..++.....++.-...++..|..+...++.++.+.
T Consensus 602 ee~L~~~l~~~~~~l~~~~~~~~~~e~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 675 (1201)
T PF12128_consen 602 EEELRERLEQAEDQLQSAEERQEELEKQLKQI------NKKIEELKREITQAEQELKQAEQDLQRLKNEREQLKQEIEEA 675 (1201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33556667777777777777766666665443 123444555555555555555555555555555555443332
Q ss_pred H-----hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHH
Q 045262 242 A-----KTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRK 316 (594)
Q Consensus 242 ~-----~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr 316 (594)
. .+..++..+...++.++.+++......+.+...+.... .........++...+..+..
T Consensus 676 ~~~~~~~~~~~l~~l~~~l~~~~~e~~~~~~~~~~~~~e~~~e~----------------~~~~~~~~~~~d~~i~~i~~ 739 (1201)
T PF12128_consen 676 KEERKEQIEEQLNELEEELKQLKQELEELLEELKEQLKELRNEL----------------KAQWQELEAELDEQIEQIKQ 739 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHH
Confidence 2 22223333333333333333333332222222222100 00111223344444444444
Q ss_pred HhHHHHHHhhHhHHhhhhhhhhh-hc-chhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Q 045262 317 SNMKLQLENSQLARRLESTQMLE-IS-VLEDGEREALNEMSQRLREENTSLSKEVEKLHADKCAGVEELVYLKWINA 391 (594)
Q Consensus 317 ~NkeLQ~EKreL~~KL~sAe~~~-~~-~~E~~ev~~i~ee~~~LR~~NedL~kQVEqLq~dRfseVEELVYLRWVNA 391 (594)
.....+.+..+-...|+.+.... +. -.+. ..+..|+..=+.|.++|.....+|.- |-| |-+|+.-
T Consensus 740 ~i~~~~~~~~~~~~~le~~~~~eL~~~GvD~-------~~I~~l~~~i~~L~~~l~~ie~~r~~-V~e--Y~~~~~~ 806 (1201)
T PF12128_consen 740 EIAAAKQEAKEQLKELEQQYNQELAGKGVDP-------ERIQQLKQEIEQLEKELKRIEERRAE-VIE--YEDWLQE 806 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHHHHHHHHHHhHHH-HHH--HHHHHHH
Confidence 44444433333333333332211 11 1111 22355666667777777777766643 333 8888765
No 60
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.60 E-value=1.2 Score=49.45 Aligned_cols=155 Identities=24% Similarity=0.281 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHHH--HHHHHHH--HH-------HHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 045262 166 EQEVKNLKNMVQMLQD--REKNLEV--EL-------LEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRL 234 (594)
Q Consensus 166 e~EI~~LR~lVeeLqE--RE~~LE~--EL-------LEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RL 234 (594)
.+|...|-..+-+|+| ||+.|.+ -| -|.|+.+|.|+.++. +.-++.+..|......|.+...||
T Consensus 249 kqEnlqLvhR~h~LEEq~reqElraeE~l~Ee~rrhrEil~k~eReasle~-----Enlqmr~qqleeentelRs~~arl 323 (502)
T KOG0982|consen 249 KQENLQLVHRYHMLEEQRREQELRAEESLSEEERRHREILIKKEREASLEK-----ENLQMRDQQLEEENTELRSLIARL 323 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5777777776655544 3333322 12 356677777765432 122344444555555555555555
Q ss_pred HHHHH----HHHhHHHHHHHHHHHHHHHH----------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh----cCChh
Q 045262 235 EAQVA----DHAKTVSELEAAKTKIKLLK----------KKLRTEAEQNREQILAVQERVTKLQEQAHKAA----AIDPD 296 (594)
Q Consensus 235 q~qv~----e~~~v~~ELE~ar~kir~Lq----------kKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~----~~d~E 296 (594)
...+. +..+...+||.++-++...| ++++.+-+.+.+=|.-|..++..++..-...+ ..+.
T Consensus 324 ksl~dklaee~qr~sd~LE~lrlql~~eq~l~~rm~d~Lrrfq~ekeatqELieelrkelehlr~~kl~~a~p~rgrsS- 402 (502)
T KOG0982|consen 324 KSLADKLAEEDQRSSDLLEALRLQLICEQKLRVRMNDILRRFQEEKEATQELIEELRKELEHLRRRKLVLANPVRGRSS- 402 (502)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhccccCchh-
Confidence 43322 22345566777777766665 23444444455555666666666665422211 1122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHh
Q 045262 297 TQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARR 331 (594)
Q Consensus 297 ~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~K 331 (594)
-++-+||.||..||.-|.-|..+|.+|--.
T Consensus 403 -----aRe~eleqevkrLrq~nr~l~eqneelngt 432 (502)
T KOG0982|consen 403 -----AREIELEQEVKRLRQPNRILSEQNEELNGT 432 (502)
T ss_pred -----HHHHHHHHHHHHhccccchhhhhhhhhhhh
Confidence 467889999999999999999999998433
No 61
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=95.52 E-value=5.8 Score=44.94 Aligned_cols=48 Identities=21% Similarity=0.120 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHh-----hhhcchhhHHHHHHHHHHHHHH
Q 045262 348 REALNEMSQRLREENTSLSKEVEKLH-----ADKCAGVEELVYLKWINACLRY 395 (594)
Q Consensus 348 v~~i~ee~~~LR~~NedL~kQVEqLq-----~dRfseVEELVYLRWVNACLR~ 395 (594)
+..+.+..+.|...-+||...+..|. .+||-..-+-|--..-.|=.-|
T Consensus 478 ~~e~~~~~~~L~~q~~dL~~~a~~lE~~Iqy~nRfr~~~~~V~~~f~~Ae~lF 530 (569)
T PRK04778 478 LEEATEDVETLEEETEELVENATLTEQLIQYANRYRSDNEEVAEALNEAERLF 530 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 34455556666666666666555554 4555443333333333333333
No 62
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=95.51 E-value=0.56 Score=49.70 Aligned_cols=115 Identities=25% Similarity=0.281 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhchhh-----HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 168 EVKNLKNMVQMLQDREKNLEVELLEYYGLKEQ-----ETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHA 242 (594)
Q Consensus 168 EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQ-----Ea~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~ 242 (594)
.+..|-.++-.|.++-..|+.++-....+++. -..+..++..|+.-..+|.....++..++.+...+...+.+
T Consensus 166 ~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~-- 243 (312)
T smart00787 166 ELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIED-- 243 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 34445555555555555555555554444333 12344444555555555555555555555554444444432
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 045262 243 KTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQE 285 (594)
Q Consensus 243 ~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~ 285 (594)
...+....+..|.++++.+......+..++..|+.++..||.
T Consensus 244 -~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~Le~ 285 (312)
T smart00787 244 -LTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQS 285 (312)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 223333444555555555555555555555555555555553
No 63
>PRK09039 hypothetical protein; Validated
Probab=95.49 E-value=0.74 Score=49.12 Aligned_cols=98 Identities=20% Similarity=0.208 Sum_probs=66.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-chhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 162 KDDCEQEVKNLKNMVQMLQDREKNLEVELLEYYG-LKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVAD 240 (594)
Q Consensus 162 ~~d~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~-LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e 240 (594)
..+.+.+|..|+.....++.+..+|+..+-.-+. ..+-+..+..|+..|.....++......|..|..|...|++|+
T Consensus 76 ~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Ql-- 153 (343)
T PRK09039 76 NQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQL-- 153 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH--
Confidence 3456788999999999999888888887665444 3445666777777887777777777777777777777777773
Q ss_pred HHhHHHHHHHHHHHHHHHHHHH
Q 045262 241 HAKTVSELEAAKTKIKLLKKKL 262 (594)
Q Consensus 241 ~~~v~~ELE~ar~kir~LqkKl 262 (594)
..+..+|+.++.+.++.+.+|
T Consensus 154 -a~le~~L~~ae~~~~~~~~~i 174 (343)
T PRK09039 154 -AALEAALDASEKRDRESQAKI 174 (343)
T ss_pred -HHHHHHHHHHHHHHHHHHHHH
Confidence 333444555555444444433
No 64
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.49 E-value=3.2 Score=41.82 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 169 VKNLKNMVQMLQDREKNLEVELLE 192 (594)
Q Consensus 169 I~~LR~lVeeLqERE~~LE~ELLE 192 (594)
|..|+.-+...++|...++.+|-+
T Consensus 3 ~~~l~~eld~~~~~~~~~~~~l~~ 26 (237)
T PF00261_consen 3 IQQLKDELDEAEERLEEAEEKLKE 26 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666666555544
No 65
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.40 E-value=5.4 Score=43.87 Aligned_cols=30 Identities=10% Similarity=0.079 Sum_probs=17.2
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 212 LNNMEGRLLNLKIESLQADNRRLEAQVADH 241 (594)
Q Consensus 212 ~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~ 241 (594)
....+++.+..++..++.+..+|++++...
T Consensus 217 ~l~~e~~~l~~~~~~l~~~l~~l~~~i~~l 246 (562)
T PHA02562 217 RKQNKYDELVEEAKTIKAEIEELTDELLNL 246 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555556666666666666666555
No 66
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=95.35 E-value=3.4 Score=41.20 Aligned_cols=121 Identities=23% Similarity=0.372 Sum_probs=83.6
Q ss_pred HHHHhhhc--hhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 189 ELLEYYGL--KEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEA 266 (594)
Q Consensus 189 ELLEyy~L--KEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a 266 (594)
++=.||.- ...-..|.-|+.++..-........+.+..+..||.+| ++-|..|+.++..|++++.. .
T Consensus 13 ~iK~YYndIT~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L----------~epL~~a~~e~~eL~k~L~~-y 81 (201)
T PF13851_consen 13 EIKNYYNDITLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRL----------SEPLKKAEEEVEELRKQLKN-Y 81 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hHHHHHHHHHHHHHHHHHHH-H
Confidence 44456652 23334455555555444444444555555555555554 55677888888999999886 6
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhh
Q 045262 267 EQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQM 337 (594)
Q Consensus 267 ~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~ 337 (594)
.+.|..+..++.++..++.+ +++|+.|-.-|......|+.|..+|-.|...+=.
T Consensus 82 ~kdK~~L~~~k~rl~~~ek~-----------------l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~ 135 (201)
T PF13851_consen 82 EKDKQSLQNLKARLKELEKE-----------------LKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQ 135 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888888888888776544 7888888888999999999999999888777643
No 67
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=95.31 E-value=3.1 Score=42.09 Aligned_cols=76 Identities=22% Similarity=0.310 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-chhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 166 EQEVKNLKNMVQMLQDREKNLEVELLEYYG-LKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADH 241 (594)
Q Consensus 166 e~EI~~LR~lVeeLqERE~~LE~ELLEyy~-LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~ 241 (594)
..||-.||..+++++-.-...+.++.+..+ +......+...+++|..+..|+..|+.+|..|+.|...|+..++..
T Consensus 30 ~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~~l~~~ 106 (202)
T PF06818_consen 30 DSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELREELACA 106 (202)
T ss_pred HhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHHHHHhh
Confidence 578999999999998888888888887776 5666677888899999999999999999999999999999888875
No 68
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.30 E-value=4.2 Score=45.17 Aligned_cols=179 Identities=21% Similarity=0.283 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 045262 201 TIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERV 280 (594)
Q Consensus 201 a~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v 280 (594)
..+..+++.+....-+...|...|.+++.+...+..++.+... .+...+.+|..+...+...-.|-++|-..|-.++
T Consensus 45 ~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~---~l~~~~~~I~~~~~~l~~l~~q~r~qr~~La~~L 121 (420)
T COG4942 45 KEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETAD---DLKKLRKQIADLNARLNALEVQEREQRRRLAEQL 121 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444455555555566666666666555554432 2223334444444444444444444544455555
Q ss_pred HHHHHHHHH------hhcC------------ChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcc
Q 045262 281 TKLQEQAHK------AAAI------------DPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISV 342 (594)
Q Consensus 281 ~~Lq~~E~e------~~~~------------d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~ 342 (594)
..++.-... .... ..-...+.+.+..|.....+|...-..+.-|+.+|...+..-
T Consensus 122 ~A~~r~g~~p~~~ll~~~eda~~~~R~ai~~~~l~~~~~~~i~~l~~~~~~l~~~~~~iaaeq~~l~~~~~eq------- 194 (420)
T COG4942 122 AALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALKATLKQLAAVRAEIAAEQAELTTLLSEQ------- 194 (420)
T ss_pred HHHHhccCCCCchhhcChhhhhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence 444432000 0000 011223444555555555555555555555555543221110
Q ss_pred hhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHHHHh
Q 045262 343 LEDGEREALNEMSQRLREENTSLSKEVEKLHADKCAGVEELVYLKWINACLRYELR 398 (594)
Q Consensus 343 ~E~~ev~~i~ee~~~LR~~NedL~kQVEqLq~dRfseVEELVYLRWVNACLR~ELr 398 (594)
+ .=.+....++.+...+..+++..-..+-...+|| +==-+-|+.++.
T Consensus 195 -----~-~q~~kl~~~~~E~kk~~~~l~~~l~~~q~~l~eL---~~~~~~L~~~Ia 241 (420)
T COG4942 195 -----R-AQQAKLAQLLEERKKTLAQLNSELSADQKKLEEL---RANESRLKNEIA 241 (420)
T ss_pred -----H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHH
Confidence 1 1123345666666777666666655555555554 233345565554
No 69
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=95.29 E-value=11 Score=46.72 Aligned_cols=39 Identities=41% Similarity=0.618 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHH
Q 045262 248 LEAAKTKIKLLKKKLRTEAEQNREQ-------ILAVQERVTKLQEQ 286 (594)
Q Consensus 248 LE~ar~kir~LqkKl~~~a~q~K~q-------i~~Lkq~v~~Lq~~ 286 (594)
|+..+.+.-.+.++++..++..+++ +..|+.+++.|+..
T Consensus 593 le~~k~~ls~~~~~~~~~~e~~~~~~~~~~e~~~~l~~~i~sL~~~ 638 (1317)
T KOG0612|consen 593 LEESKSKLSKENKKLRSELEKERRQRTEISEIIAELKEEISSLEET 638 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3444444444555555555555443 34455555555543
No 70
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=95.29 E-value=8.2 Score=49.50 Aligned_cols=84 Identities=24% Similarity=0.274 Sum_probs=51.0
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH-------------------HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 045262 203 VMELQNRLKLNNMEGRLLNLKIESLQADNRRLE-------------------AQVADHAKTVSELEAAKTKIKLLKKKLR 263 (594)
Q Consensus 203 v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq-------------------~qv~e~~~v~~ELE~ar~kir~LqkKl~ 263 (594)
+.-|++.|.....++..+...+..|+.|+.+-. ....++..+.++|+.....|-+|..++.
T Consensus 1259 l~plq~~l~el~~e~~~~~ael~~l~~e~~~wK~R~q~L~~k~k~~d~~~~~kL~~ei~~Lk~el~~ke~~~~el~~~~~ 1338 (1822)
T KOG4674|consen 1259 LAPLQNELKELKAELQEKVAELKKLEEENDRWKQRNQDLLEKYKDSDKNDYEKLKSEISRLKEELEEKENLIAELKKELN 1338 (1822)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666666666666666777766655522 2233455556666666666666666666
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Q 045262 264 TEAEQNREQILAVQERVTKLQEQ 286 (594)
Q Consensus 264 ~~a~q~K~qi~~Lkq~v~~Lq~~ 286 (594)
+..++.+.++..+...+.-+..+
T Consensus 1339 ~~q~~~k~qld~l~~e~~~lt~~ 1361 (1822)
T KOG4674|consen 1339 RLQEKIKKQLDELNNEKANLTKE 1361 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666665555555443
No 71
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.18 E-value=8.2 Score=44.69 Aligned_cols=135 Identities=19% Similarity=0.222 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHH-HHHHHHH-----HHHHHHHHHHHHhHHHHHH
Q 045262 176 VQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLK-IESLQAD-----NRRLEAQVADHAKTVSELE 249 (594)
Q Consensus 176 VeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~k-I~sLE~E-----n~RLq~qv~e~~~v~~ELE 249 (594)
+.+.++--..|+--.-+|-++|.|+..|.-|+..|..-....+..-.. ++..+.+ +++...-..+...+.++++
T Consensus 120 ~~e~~~lk~~lee~~~el~~~k~qq~~v~~l~e~l~k~~~~~~~~ie~~a~~~e~~~~q~~~e~e~~L~~~~~~~~~q~~ 199 (629)
T KOG0963|consen 120 SEENEELKEELEEVNNELADLKTQQVTVRNLKERLRKLEQLLEIFIENAANETEEKLEQEWAEREAGLKDEEQNLQEQLE 199 (629)
T ss_pred hhhHHHHHHHHHHHHHHHhhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444455555567788888999988888877655554443332 2233332 2333333444445555666
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHH----HHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHH
Q 045262 250 AAKTKIKLLKKKLRTEAEQNREQILAVQER----VTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKS 317 (594)
Q Consensus 250 ~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~----v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~ 317 (594)
.+..+|..||+.+..-. .++..++.. ++...+ |...+- .+++.--+++..||-|+..||-.
T Consensus 200 ~le~ki~~lq~a~~~t~----~el~~~~s~~dee~~~k~a-ev~lim--~eLe~aq~ri~~lE~e~e~L~~q 264 (629)
T KOG0963|consen 200 ELEKKISSLQSAIEDTQ----NELFDLKSKYDEEVAAKAA-EVSLIM--TELEDAQQRIVFLEREVEQLREQ 264 (629)
T ss_pred HHHHHHHHHHHHHHhhh----hHHHHHHHhhhhhhHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666655544332 233333332 443322 222211 34555667788888888888753
No 72
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=95.13 E-value=11 Score=45.70 Aligned_cols=44 Identities=20% Similarity=0.273 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHH-------HHHHHHhhhchhhHHHHHHHHHHHHhhhh
Q 045262 172 LKNMVQMLQDREKNL-------EVELLEYYGLKEQETIVMELQNRLKLNNM 215 (594)
Q Consensus 172 LR~lVeeLqERE~~L-------E~ELLEyy~LKEQEa~v~ELe~~L~~k~~ 215 (594)
||..|+.|.|+=..| ...|+|+..+|=|--.++|...++-.+.+
T Consensus 229 Lr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~qqa 279 (1243)
T KOG0971|consen 229 LRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQQA 279 (1243)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666554444 45678887777666666666655544433
No 73
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.10 E-value=3.5 Score=41.55 Aligned_cols=39 Identities=21% Similarity=0.209 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhh
Q 045262 301 LQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLE 339 (594)
Q Consensus 301 lq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~ 339 (594)
...++.||+-....=.....++...+.|..+|..|+.++
T Consensus 154 ~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Ra 192 (237)
T PF00261_consen 154 GNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRA 192 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444445555555555555555544
No 74
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=95.05 E-value=8.1 Score=44.77 Aligned_cols=185 Identities=21% Similarity=0.145 Sum_probs=102.1
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH---------------HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 203 VMELQNRLKLNNMEGRLLNLKIESLQADNRRL---------------EAQVADHAKTVSELEAAKTKIKLLKKKLRTEAE 267 (594)
Q Consensus 203 v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RL---------------q~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~ 267 (594)
-..|.++....+.++..+..+|.+|+.-+..- -...+++..+..+|+.|+.+|..|++.+.....
T Consensus 184 e~~L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ 263 (629)
T KOG0963|consen 184 EAGLKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLRE 263 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666777888899999987654432 244678888999999999999999999888777
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHH----HHHHhhHhHHhhhhhhhhhhcch
Q 045262 268 QNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMK----LQLENSQLARRLESTQMLEISVL 343 (594)
Q Consensus 268 q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~Nke----LQ~EKreL~~KL~sAe~~~~~~~ 343 (594)
|....-...+. ++-+++...-..+.-+|.++..|=.-... |+++.....-.+.+-+.....
T Consensus 264 ql~~~N~~~~~-------------~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~-- 328 (629)
T KOG0963|consen 264 QLAKANSSKKL-------------AKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKA-- 328 (629)
T ss_pred HHHhhhhhhhh-------------ccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 76432211111 12233333333444445444433222222 222322232222222222221
Q ss_pred hhhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhcchhhH-----------HHHHHHHHHHHHHHHhhcCCC
Q 045262 344 EDGEREALNEMSQRLREENTSLSKEVEKLHADKCAGVEE-----------LVYLKWINACLRYELRNYQPP 403 (594)
Q Consensus 344 E~~ev~~i~ee~~~LR~~NedL~kQVEqLq~dRfseVEE-----------LVYLRWVNACLR~ELrn~q~p 403 (594)
-+.+.+.+++..+. |.+|+++-++|--|+.=-|++-++ =.-|===|+-|.+|+--+-.+
T Consensus 329 ~~~~leel~~kL~~-~sDYeeIK~ELsiLk~ief~~se~a~~~~~~~~~leslLl~knr~lq~e~a~Lr~~ 398 (629)
T KOG0963|consen 329 KISELEELKEKLNS-RSDYEEIKKELSILKAIEFGDSEEANDEDETAKTLESLLLEKNRKLQNENASLRVA 398 (629)
T ss_pred HHHHHHHHHHHHhh-hccHHHHHHHHHHHHHhhcCCcccccccccccchHHHHHHHHHhhhhHHHHHHhcc
Confidence 11222333333332 477888888888888777762221 012333588888887655443
No 75
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.02 E-value=6.3 Score=48.48 Aligned_cols=26 Identities=31% Similarity=0.353 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHh
Q 045262 348 REALNEMSQRLREENTSLSKEVEKLH 373 (594)
Q Consensus 348 v~~i~ee~~~LR~~NedL~kQVEqLq 373 (594)
+..+.++...+...-.+..+.++.|+
T Consensus 544 l~~~k~~l~~~k~e~~~~~k~l~~~~ 569 (1293)
T KOG0996|consen 544 LDDLKEELPSLKQELKEKEKELPKLR 569 (1293)
T ss_pred HHHHHHhhhhHHHHHHHHHHhHHHHH
Confidence 34445555555555555555555554
No 76
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=95.01 E-value=2.8 Score=45.71 Aligned_cols=70 Identities=17% Similarity=0.161 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcch-hhhHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q 045262 306 VLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVL-EDGEREALNEMSQRLREENTSLSKEVEKLHAD 375 (594)
Q Consensus 306 eLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~-E~~ev~~i~ee~~~LR~~NedL~kQVEqLq~d 375 (594)
.|...+.+++.....|+.+...|...++..+....... ...+...+..+.+..+..|+.|.+.+++.+..
T Consensus 314 ~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~el~~L~Re~~~~~~~Y~~l~~r~eea~~~ 384 (498)
T TIGR03007 314 QLQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVEAELTQLNRDYEVNKSNYEQLLTRRESAEVS 384 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444455555555555555555555555554443221 12334556677777777788888777776654
No 77
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=94.95 E-value=4.2 Score=47.61 Aligned_cols=110 Identities=19% Similarity=0.219 Sum_probs=56.5
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHH----HHHHHHHHHhHHHHHHHHHHHHHHHH
Q 045262 211 KLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAK-TKIKLLK----KKLRTEAEQNREQILAVQERVTKLQE 285 (594)
Q Consensus 211 ~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar-~kir~Lq----kKl~~~a~q~K~qi~~Lkq~v~~Lq~ 285 (594)
....+|++.|...-..-++|-+.|++-++....++..||.+. -.+.++| .++........+.+..|..++-+|+.
T Consensus 97 e~qa~Ele~l~~ae~agraEae~Lraala~ae~~R~~lEE~~q~ELee~q~~Hqeql~~Lt~aHq~~l~sL~~k~~~Le~ 176 (739)
T PF07111_consen 97 EAQAEELEALARAEKAGRAEAEELRAALAGAEVVRKNLEEGSQRELEEAQRLHQEQLSSLTQAHQEALASLTSKAEELEK 176 (739)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456666665556666777777777777777776664332 2222222 23333333344445555555555543
Q ss_pred HHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhh
Q 045262 286 QAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQM 337 (594)
Q Consensus 286 ~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~ 337 (594)
. ++.||......-......|.|...|-..|.-++.
T Consensus 177 ~-----------------L~~le~~r~~e~~~La~~q~e~d~L~~qLsk~~~ 211 (739)
T PF07111_consen 177 S-----------------LESLETRRAGEAKELAEAQREADLLREQLSKTQE 211 (739)
T ss_pred H-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 2 4445544444444444445555555555554443
No 78
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=94.94 E-value=2.7 Score=44.65 Aligned_cols=42 Identities=19% Similarity=0.325 Sum_probs=23.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhh
Q 045262 296 DTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQM 337 (594)
Q Consensus 296 E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~ 337 (594)
+++.+.+.+.+++.++.+++........++.++-..+..|+.
T Consensus 219 ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~ 260 (312)
T smart00787 219 EIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEK 260 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555554
No 79
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=94.93 E-value=0.007 Score=69.26 Aligned_cols=170 Identities=23% Similarity=0.286 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH------HHHHhHHHHHHHHHHHHHHHHHHHHh
Q 045262 217 GRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRT------EAEQNREQILAVQERVTKLQEQAHKA 290 (594)
Q Consensus 217 i~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~------~a~q~K~qi~~Lkq~v~~Lq~~E~e~ 290 (594)
...+..++..|+.|+.++.+...++..-..+++ ..|..|+.+... .+..-|-++..|+++..++..-|..+
T Consensus 241 ~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le---~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~v 317 (713)
T PF05622_consen 241 LADLRAQLRRLREELERLEEQRDDLKIELEELE---KEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEV 317 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 334555556666666666555554433222222 233333333332 22233334455555444444433221
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcc---------hhhhHHHHHHHHHHHHHHh
Q 045262 291 AAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISV---------LEDGEREALNEMSQRLREE 361 (594)
Q Consensus 291 ~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~---------~E~~ev~~i~ee~~~LR~~ 361 (594)
.-..+|++.+.+|...|.+|+-.|..|...+..|--.|..+.+.-.-+ .+.. ......+++.|...
T Consensus 318 ----e~YKkKLed~~~lk~qvk~Lee~N~~l~e~~~~LEeel~~~~~~~~qle~~k~qi~eLe~~-l~~~~~~~~~l~~e 392 (713)
T PF05622_consen 318 ----EKYKKKLEDLEDLKRQVKELEEDNAVLLETKAMLEEELKKARALKSQLEEYKKQIQELEQK-LSEESRRADKLEFE 392 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 112356666666667777777777776666666655554443311100 0000 11223446677788
Q ss_pred hHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Q 045262 362 NTSLSKEVEKLHADKCAGVEELVYLKWINACLR 394 (594)
Q Consensus 362 NedL~kQVEqLq~dRfseVEELVYLRWVNACLR 394 (594)
|..|...++.|+..+-.-+.|.--|||.+.-|+
T Consensus 393 ~~~L~ek~~~l~~eke~l~~e~~~L~e~~eeL~ 425 (713)
T PF05622_consen 393 NKQLEEKLEALEEEKERLQEERDSLRETNEELE 425 (713)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 888888888888888888888888888776554
No 80
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=94.90 E-value=3.7 Score=39.31 Aligned_cols=111 Identities=18% Similarity=0.237 Sum_probs=70.2
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHH
Q 045262 204 MELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEA---EQNREQILAVQERV 280 (594)
Q Consensus 204 ~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a---~q~K~qi~~Lkq~v 280 (594)
...++.|+.-..+.+.|..+|.+|+.+..-.+.. ...+..+.|-+++.|.-|+.++...+ ++...++..|...-
T Consensus 6 l~v~~kLK~~~~e~dsle~~v~~LEreLe~~q~~---~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk 82 (140)
T PF10473_consen 6 LHVEEKLKESESEKDSLEDHVESLERELEMSQEN---KECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEK 82 (140)
T ss_pred HHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888889999999999999997776644 33455666777777777776665443 33333444443322
Q ss_pred HHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhH
Q 045262 281 TKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQ 327 (594)
Q Consensus 281 ~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKre 327 (594)
..|. .+++++-.++.+||.-...+++....+..++..
T Consensus 83 ~~L~----------k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q 119 (140)
T PF10473_consen 83 ENLD----------KELQKKQEKVSELESLNSSLENLLQEKEQEKVQ 119 (140)
T ss_pred HHHH----------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 2222 345555566777777776666666666666444
No 81
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=94.89 E-value=9.9 Score=44.08 Aligned_cols=50 Identities=22% Similarity=0.290 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045262 220 LNLKIESLQADNRRLEAQ----VADHAKTVSELEAAKTKIKLLKKKLRTEAEQN 269 (594)
Q Consensus 220 L~~kI~sLE~En~RLq~q----v~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~ 269 (594)
|...+..|+.|...|..+ +.+...+-.-...-..++.+|+++++....+.
T Consensus 85 Lq~E~~~L~kElE~L~~qlqaqv~~ne~Ls~L~~EqEerL~ELE~~le~~~e~~ 138 (617)
T PF15070_consen 85 LQAEAEHLRKELESLEEQLQAQVENNEQLSRLNQEQEERLAELEEELERLQEQQ 138 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444433 32222222222344566777777666655443
No 82
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=94.87 E-value=9 Score=45.83 Aligned_cols=58 Identities=21% Similarity=0.264 Sum_probs=39.0
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hchhhHHH-------HHHHHHHHHhhhhhhH
Q 045262 161 EKDDCEQEVKNLKNMVQMLQDREKNLEVELLEYY--------GLKEQETI-------VMELQNRLKLNNMEGR 218 (594)
Q Consensus 161 e~~d~e~EI~~LR~lVeeLqERE~~LE~ELLEyy--------~LKEQEa~-------v~ELe~~L~~k~~Ei~ 218 (594)
+...++..+.++.+.+..||-+=.+||+|+--+- .|||-+.. +-+|+..|.+++-+|-
T Consensus 93 dv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf 165 (1265)
T KOG0976|consen 93 DVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIF 165 (1265)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHH
Confidence 4445567788999999999999999998876542 33444433 4456666666665553
No 83
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=94.86 E-value=3.7 Score=48.07 Aligned_cols=112 Identities=23% Similarity=0.311 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHHHHHhhcC---
Q 045262 218 RLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQN-REQILAVQERVTKLQEQAHKAAAI--- 293 (594)
Q Consensus 218 ~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~-K~qi~~Lkq~v~~Lq~~E~e~~~~--- 293 (594)
..+.-.|..|+.+|+-|+..+..+...+. .=|.-+..|.||+..+.++- .-+-.+-.++-++.++++. +++.
T Consensus 456 r~lk~eL~qlr~ene~Lq~Kl~~L~~aRq---~DKq~l~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~-aar~~~~ 531 (697)
T PF09726_consen 456 RSLKSELSQLRQENEQLQNKLQNLVQARQ---QDKQSLQQLEKRLAEERRQRASLEKQLQEERKARKEEEEK-AARALAQ 531 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHh-hhhcccc
Confidence 35666666677777766665555444332 22333333444443333221 1122222223333332221 1111
Q ss_pred -----ChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhh
Q 045262 294 -----DPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLE 333 (594)
Q Consensus 294 -----d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~ 333 (594)
..-.|.=.++.++||.|+..||+-.+..+++++.|-..+.
T Consensus 532 ~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~ 576 (697)
T PF09726_consen 532 AQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQ 576 (697)
T ss_pred chhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0112222335566777777777777666666666666553
No 84
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=94.85 E-value=0.095 Score=47.24 Aligned_cols=92 Identities=25% Similarity=0.403 Sum_probs=64.4
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 045262 203 VMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTK 282 (594)
Q Consensus 203 v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~ 282 (594)
..+|..+|..-..|...|+++|.-|+.+|+.|..++..|..--..++. ++.
T Consensus 3 ~aeLR~qLqFvEEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~-----------------------------~~~ 53 (96)
T PF11365_consen 3 SAELRRQLQFVEEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDS-----------------------------LAK 53 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-----------------------------ccc
Confidence 578999999999999999999999999999999988877643333320 000
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhH
Q 045262 283 LQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQ 327 (594)
Q Consensus 283 Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKre 327 (594)
+-.. ..-....+.++.. ++-.+.++.+|.+...+||.|||=
T Consensus 54 ~~~g-~~~~~~~~~l~~e---Lk~a~~qi~~Ls~kv~eLq~ENRv 94 (96)
T PF11365_consen 54 LSEG-GSPSGREAELQEE---LKLAREQINELSGKVMELQYENRV 94 (96)
T ss_pred CCCC-CCCccccHHHHHH---HHHHHHHHHHHhhHHHHHhhcccc
Confidence 0000 0001122344444 555888999999999999999983
No 85
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=94.83 E-value=8.8 Score=43.24 Aligned_cols=44 Identities=16% Similarity=0.272 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 045262 220 LNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLR 263 (594)
Q Consensus 220 L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~ 263 (594)
+...+..-+.+-.+|..++.....+..+|..+...+..||.++.
T Consensus 216 ~~~~leeae~~l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~ 259 (522)
T PF05701_consen 216 WEKELEEAEEELEELKEELEAAKDLESKLAEASAELESLQAELE 259 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444444443333344444444444444444333
No 86
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=94.82 E-value=10 Score=43.84 Aligned_cols=60 Identities=23% Similarity=0.299 Sum_probs=43.3
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHHhhhhhhHHHH
Q 045262 162 KDDCEQEVKNLKNMVQMLQDREKNLEVELLEYYGL-KEQETIVMELQNRLKLNNMEGRLLN 221 (594)
Q Consensus 162 ~~d~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~L-KEQEa~v~ELe~~L~~k~~Ei~~L~ 221 (594)
-.+...+|..|+..+.++..--..|..++-....- .+++....+||.+++++..-+++|-
T Consensus 330 l~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~ 390 (594)
T PF05667_consen 330 LEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLP 390 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35667789999999999888888888877766654 3455667778887777655555554
No 87
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=94.81 E-value=11 Score=44.28 Aligned_cols=169 Identities=27% Similarity=0.393 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHhhhchhhHHH-----------HHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 045262 168 EVKNLKNMVQMLQDREKNLEVEL----LEYYGLKEQETI-----------VMELQNRLKLNNMEGRLLNLKIESLQADNR 232 (594)
Q Consensus 168 EI~~LR~lVeeLqERE~~LE~EL----LEyy~LKEQEa~-----------v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~ 232 (594)
|-..+....++|+.+|..|-.-| -+...|+.|-+. |.+|.++|...+.-=..|......|.-|+.
T Consensus 423 ekk~~eki~E~lq~~eqel~~llq~~ekev~dLe~~l~~~~~~eq~yskQVeeLKtELE~EkLKN~ELt~~~nkLslEkk 502 (786)
T PF05483_consen 423 EKKQFEKIAEELQGTEQELTGLLQIREKEVHDLEIQLTTIKESEQHYSKQVEELKTELEQEKLKNTELTVNCNKLSLEKK 502 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777888888887765432 234445444443 455666665433333344555566666666
Q ss_pred HHHHHHHHHH----hHHHHHHHHHHH-------HHHHH---HHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHhhcCChhH
Q 045262 233 RLEAQVADHA----KTVSELEAAKTK-------IKLLK---KKLRTEAEQNREQILAVQERVTK-LQEQAHKAAAIDPDT 297 (594)
Q Consensus 233 RLq~qv~e~~----~v~~ELE~ar~k-------ir~Lq---kKl~~~a~q~K~qi~~Lkq~v~~-Lq~~E~e~~~~d~E~ 297 (594)
.|+-+..... ++.+.+...+.+ |..|. .+++-+.+..+.++..-...|.. |...|+.+.....++
T Consensus 503 ~laQE~~~~~~elKk~qedi~~~k~qee~~~kqie~Lee~~~~Lrneles~~eel~~k~~Ev~~kl~ksEen~r~~e~e~ 582 (786)
T PF05483_consen 503 QLAQETSDMALELKKQQEDINNSKKQEEKMLKQIENLEETNTQLRNELESVKEELKQKGEEVKCKLDKSEENARSIECEI 582 (786)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHH
Confidence 6654333222 222222222221 11111 22233333334444433444433 555566666677888
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HhHHHHHHhhHhHHhhhhhhh
Q 045262 298 QSRLQRLKVLEAEAEDLRK-------SNMKLQLENSQLARRLESTQM 337 (594)
Q Consensus 298 ekKlq~lkeLE~Ev~ELRr-------~NkeLQ~EKreL~~KL~sAe~ 337 (594)
.++...++-||..+--||+ ...+||.+|--|-.+. +|+.
T Consensus 583 ~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~-~aE~ 628 (786)
T PF05483_consen 583 LKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKI-TAES 628 (786)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHH
Confidence 8888888989988888887 4567888888776664 4444
No 88
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=94.78 E-value=5.6 Score=45.95 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045262 169 VKNLKNMVQMLQDREKNLEVELLEYY 194 (594)
Q Consensus 169 I~~LR~lVeeLqERE~~LE~ELLEyy 194 (594)
+..|...+.+++.+=...|.+|..|.
T Consensus 196 ~~~L~~ql~~l~~~l~~aE~~l~~fk 221 (754)
T TIGR01005 196 ADFLAPEIADLSKQSRDAEAEVAAYR 221 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46666777777777666777777773
No 89
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=94.73 E-value=6 Score=42.55 Aligned_cols=159 Identities=18% Similarity=0.233 Sum_probs=79.0
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH------------------hHHHHHHHHHHHHHHHHHHH---H
Q 045262 205 ELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHA------------------KTVSELEAAKTKIKLLKKKL---R 263 (594)
Q Consensus 205 ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~------------------~v~~ELE~ar~kir~LqkKl---~ 263 (594)
=|-++|.--..|-|.|...++.|+.....|.....+.. .+..-|..+|..|+-|+..+ +
T Consensus 13 IL~~eLe~cq~ErDqyKlMAEqLqer~q~LKkk~~el~~~~~~~~d~~~~~~~~~~~La~lL~~sre~Nk~L~~Ev~~Lr 92 (319)
T PF09789_consen 13 ILSQELEKCQSERDQYKLMAEQLQERYQALKKKYRELIQEAAGFGDPSIPPEKENKNLAQLLSESREQNKKLKEEVEELR 92 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccCCccCCcccchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455666666666666665555554333222 22233355666666666433 3
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcch
Q 045262 264 TEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVL 343 (594)
Q Consensus 264 ~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~ 343 (594)
.....+++++-.|+++++..+..-...... .....|-+-|..| +.++..+.+||++-+-+
T Consensus 93 qkl~E~qGD~KlLR~~la~~r~~~~~~~~~-~~~~ere~lV~qL----Ek~~~q~~qLe~d~qs~--------------- 152 (319)
T PF09789_consen 93 QKLNEAQGDIKLLREKLARQRVGDEGIGAR-HFPHEREDLVEQL----EKLREQIEQLERDLQSL--------------- 152 (319)
T ss_pred HHHHHHhchHHHHHHHHHhhhhhhcccccc-ccchHHHHHHHHH----HHHHHHHHHHHHHHHHH---------------
Confidence 333445666777777777766554322222 2223344444444 44555555555543332
Q ss_pred hhhHHHHHHHHHHHHHHhhHHHHHHHHHHhh---hhcchhhHHH
Q 045262 344 EDGEREALNEMSQRLREENTSLSKEVEKLHA---DKCAGVEELV 384 (594)
Q Consensus 344 E~~ev~~i~ee~~~LR~~NedL~kQVEqLq~---dRfseVEELV 384 (594)
-++-+.++.|.+..|.--.+|-.|+..+=+ .|.-||+-|+
T Consensus 153 -lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi 195 (319)
T PF09789_consen 153 -LDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALI 195 (319)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHH
Confidence 122233345555555555555555555433 2555565555
No 90
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=94.71 E-value=4.5 Score=48.99 Aligned_cols=177 Identities=22% Similarity=0.241 Sum_probs=89.3
Q ss_pred CCccchhhHHhhhhccCCCCCCCCCCccccccCCCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH-HHHh
Q 045262 115 NSYLLPEFNELVKEIDFGGPNVGYHPKKVIVTPKSDVENPRPCRGSEKDDCEQEVKNLKNMVQMLQDREKNLEVE-LLEY 193 (594)
Q Consensus 115 d~~lLpEf~dl~~e~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~e~~d~e~EI~~LR~lVeeLqERE~~LE~E-LLEy 193 (594)
-..==.++.+|+.-|.+-.. .+-.|-+++....+..+.. |+-|.|=|...=.+ |+.|
T Consensus 122 ~a~t~s~i~elv~~fNIQi~------------------NLCqFLpQDkV~EFa~L~p----i~LL~eTekAig~~~ll~~ 179 (1072)
T KOG0979|consen 122 SATTKSEIEELVAHFNIQID------------------NLCQFLPQDKVKEFARLSP----IELLVETEKAIGAEELLQY 179 (1072)
T ss_pred chhhhHHHHHHHHHHhcccC------------------chhhhccHHHHHHHHcCCh----HHHHHHHHHhcCchhhHHH
Confidence 33445788999987765433 2334444444444444433 33344445555444 6655
Q ss_pred -hhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHhHH
Q 045262 194 -YGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKL-RTEAEQNRE 271 (594)
Q Consensus 194 -y~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl-~~~a~q~K~ 271 (594)
+.|.++...-..|+.-+.-++.-+..|...|..|+-+-++++ |.+.-+++|+.|..+. -...+....
T Consensus 180 h~eL~~lr~~e~~Le~~~~~~~~~l~~L~~~~~~l~kdVE~~r-----------er~~~~~~Ie~l~~k~~~v~y~~~~~ 248 (1072)
T KOG0979|consen 180 HIELMDLREDEKSLEDKLTTKTEKLNRLEDEIDKLEKDVERVR-----------ERERKKSKIELLEKKKKWVEYKKHDR 248 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHhccccchHhhhH
Confidence 578888888888877777766666666655555555544443 4455566666664222 223333333
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhH
Q 045262 272 QILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQ 327 (594)
Q Consensus 272 qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKre 327 (594)
+...+++-+.++.+......+.-..++. ..++||.++.|++...+..+.+-++
T Consensus 249 ey~~~k~~~~r~k~~~r~l~k~~~pi~~---~~eeLe~~~~et~~~~s~~~~~~~e 301 (1072)
T KOG0979|consen 249 EYNAYKQAKDRAKKELRKLEKEIKPIED---KKEELESEKKETRSKISQKQRELNE 301 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhh---hhhhHHhHHHhHHHHHHHHHHHHHH
Confidence 3333333333333222111111112221 2444555555555555555555444
No 91
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.67 E-value=15 Score=44.99 Aligned_cols=81 Identities=27% Similarity=0.303 Sum_probs=57.7
Q ss_pred ccCCCCCCCCCCCCCC----CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHH
Q 045262 145 VTPKSDVENPRPCRGS----EKDDCEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLL 220 (594)
Q Consensus 145 ~~~~~~~~~~~a~~~~----e~~d~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L 220 (594)
+|-+.||-.|.---+. -.++.-.+|..|.....+|+.-...|+.==-+..+|+-|-.....|+++|..+.-++..+
T Consensus 648 VTl~GDV~dP~GtlTGGs~~~~a~~L~~l~~l~~~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~ 727 (1174)
T KOG0933|consen 648 VTLEGDVYDPSGTLTGGSRSKGADLLRQLQKLKQAQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALL 727 (1174)
T ss_pred eeecCceeCCCCcccCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777666543322 234456778888888888887777766655556667777777889999999998888888
Q ss_pred HHHHH
Q 045262 221 NLKIE 225 (594)
Q Consensus 221 ~~kI~ 225 (594)
...++
T Consensus 728 ~~r~~ 732 (1174)
T KOG0933|consen 728 EKRLE 732 (1174)
T ss_pred HHHHh
Confidence 77764
No 92
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=94.65 E-value=4 Score=47.18 Aligned_cols=175 Identities=16% Similarity=0.194 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH-----HH---
Q 045262 202 IVMELQNRLKLNNMEGRLLNLKIESLQADN-----RRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEA-----EQ--- 268 (594)
Q Consensus 202 ~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En-----~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a-----~q--- 268 (594)
.+.+++.+|.....++..++.+-..+-.++ ++|.+-=.+...+..++..|+++...+++.+.... ..
T Consensus 202 ql~~l~~~l~~aE~~l~~fk~~~~l~~~~~~~~~~~~L~~l~~ql~~a~~~~~~a~a~~~~l~~~l~~~~~~~~~~~~~~ 281 (754)
T TIGR01005 202 EIADLSKQSRDAEAEVAAYRAQSDLLMGNNATLATQQLAELNTELSRARANRAAAEGTADSVKKALQNGGSLDVLPEVLS 281 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchhhhhc
Confidence 344555555555555555544432222121 23333333444555666667777777776665210 00
Q ss_pred h----HHHHHHHHHHHHHHHHHHHH----hhcCChhHHHHHHHHHHHHHHHH-HHHHHhHHHHHHhh-------HhHHhh
Q 045262 269 N----REQILAVQERVTKLQEQAHK----AAAIDPDTQSRLQRLKVLEAEAE-DLRKSNMKLQLENS-------QLARRL 332 (594)
Q Consensus 269 ~----K~qi~~Lkq~v~~Lq~~E~e----~~~~d~E~ekKlq~lkeLE~Ev~-ELRr~NkeLQ~EKr-------eL~~KL 332 (594)
+ -..|..|+.+...++.+-.+ -..+++.+..-...+.+|+..+. |+++....++.+.. .|..+|
T Consensus 282 ~~~~~~~~i~~L~~~l~~l~~~~~~l~~~y~~~hP~v~~l~~qi~~l~~~i~~e~~~~~~~~~~~~~~a~~~~~~L~~~l 361 (754)
T TIGR01005 282 SQLKLEDLIQRLRERQAELRATIADLSTTMLANHPRVVAAKSSLADLDAQIRSELQKITKSLLMQADAAQARESQLVSDV 361 (754)
T ss_pred CcccccHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 03445555555555544222 22345554444444455554432 23333333332222 333333
Q ss_pred hhhhhhhhcc-hhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhh
Q 045262 333 ESTQMLEISV-LEDGEREALNEMSQRLREENTSLSKEVEKLHADK 376 (594)
Q Consensus 333 ~sAe~~~~~~-~E~~ev~~i~ee~~~LR~~NedL~kQVEqLq~dR 376 (594)
+..+.++... ....+...+..+.+..+..|+.|....++.+...
T Consensus 362 ~~~~~~~~~~~~~~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~~~~ 406 (754)
T TIGR01005 362 NQLKAASAQAGEQQVDLDALQRDAAAKRQLYESYLTNYRQAASRQ 406 (754)
T ss_pred HHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333333221 1223345677778888888888888888877665
No 93
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=94.55 E-value=10 Score=42.67 Aligned_cols=244 Identities=16% Similarity=0.213 Sum_probs=118.2
Q ss_pred CCCCCccchhhHHhhhhccCCCCCCCCCCccccccCCCCCC-----CCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 045262 112 RDNNSYLLPEFNELVKEIDFGGPNVGYHPKKVIVTPKSDVE-----NPRPCRGSEKDDCEQEVKNLKNMVQMLQDREKNL 186 (594)
Q Consensus 112 ~d~d~~lLpEf~dl~~e~d~~~~~~~~~~~~~~~~~~~~~~-----~~~a~~~~e~~d~e~EI~~LR~lVeeLqERE~~L 186 (594)
-+.-+.||-||.+|=..+.|-.++....... +-+..- .|.+......++.+.+++.=|..|-+..-+=..|
T Consensus 221 ~~EkE~Ll~EIq~Lk~qL~~~~~ss~s~~~~----~~sll~~s~~~~~~~~~~~~~~~~~~~le~er~~wtE~ES~WIsL 296 (488)
T PF06548_consen 221 MGEKEVLLEEIQDLKSQLQYYTDSSMSTDRL----RSSLLQRSYQLRPSAIPESGDENAEEELEQERQRWTEAESKWISL 296 (488)
T ss_pred cchHHHHHHHHHHHHHHHHhccccccccccc----cccHHhhhhccCCCCCcccCCCchhhhHHHHHHHHHHHHhhhhhh
Confidence 3446689999999887665544433221110 111111 1111222234455677777777787776655544
Q ss_pred HHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHH----HHHHHHHHHHHHHHHHHHhHHHHHHHHHHH---HHHHH
Q 045262 187 EVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKI----ESLQADNRRLEAQVADHAKTVSELEAAKTK---IKLLK 259 (594)
Q Consensus 187 E~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI----~sLE~En~RLq~qv~e~~~v~~ELE~ar~k---ir~Lq 259 (594)
--+| .-.|.....-++.+..++ .+-++=+.-|+..+-.++.++++-.....| +-..|
T Consensus 297 teeL----------------R~dle~~r~~aek~~~EL~~Ek~c~eEL~~al~~A~~GhaR~lEqYadLqEk~~~Ll~~H 360 (488)
T PF06548_consen 297 TEEL----------------RVDLESSRSLAEKLEMELDSEKKCTEELDDALQRAMEGHARMLEQYADLQEKHNDLLARH 360 (488)
T ss_pred HHHH----------------HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4333 222222222222222221 222333455667777777777755433333 33334
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHH-HHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhh
Q 045262 260 KKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLK-VLEAEAEDLRKSNMKLQLENSQLARRLESTQML 338 (594)
Q Consensus 260 kKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lk-eLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~ 338 (594)
++|..-... +|..+++-=.+.. .++.-..+..-+..++ +=|-|..=||.-|+.||.|.|+-+.-..+|=-.
T Consensus 361 r~i~egI~d-------VKkaAakAg~kG~-~~rF~~slaaEiSalr~erEkEr~~l~~eNk~L~~QLrDTAEAVqAagEl 432 (488)
T PF06548_consen 361 RRIMEGIED-------VKKAAAKAGVKGA-ESRFINSLAAEISALRAEREKERRFLKDENKGLQIQLRDTAEAVQAAGEL 432 (488)
T ss_pred HHHHHHHHH-------HHHHHHHhccccc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHHHH
Confidence 444433222 2222222111110 0000011111111111 235566678889999999987633333333222
Q ss_pred hhcchhhhHH-HHHHHHHHHHHHhhHHHHHHHHHHhhhhcchhhHH
Q 045262 339 EISVLEDGER-EALNEMSQRLREENTSLSKEVEKLHADKCAGVEEL 383 (594)
Q Consensus 339 ~~~~~E~~ev-~~i~ee~~~LR~~NedL~kQVEqLq~dRfseVEEL 383 (594)
...+.|..+. ..+.+.+....++|+.+-+|+|.|+..+-.++.=|
T Consensus 433 lvrl~eaeea~~~a~~r~~~~eqe~ek~~kqiekLK~kh~~Ei~t~ 478 (488)
T PF06548_consen 433 LVRLREAEEAASVAQERAMDAEQENEKAKKQIEKLKRKHKMEISTM 478 (488)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222233332 22345577788999999999999999987766433
No 94
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=94.39 E-value=14 Score=43.63 Aligned_cols=77 Identities=25% Similarity=0.256 Sum_probs=46.8
Q ss_pred CCCCCCCCCCchHHHHHHHHHHHHHHHH----HHHHHH------HHHHHhhhchhhH-------------------HHHH
Q 045262 154 PRPCRGSEKDDCEQEVKNLKNMVQMLQD----REKNLE------VELLEYYGLKEQE-------------------TIVM 204 (594)
Q Consensus 154 ~~a~~~~e~~d~e~EI~~LR~lVeeLqE----RE~~LE------~ELLEyy~LKEQE-------------------a~v~ 204 (594)
+.+.+...+++...|++.+...|++|.+ ||..|- +.|+|-....+-+ -.|.
T Consensus 333 ~s~~n~~~~d~~q~eLdK~~~~i~~Ln~~leaReaqll~~e~~ka~lee~~~n~~~e~~~~k~~~s~~ssl~~e~~QRva 412 (961)
T KOG4673|consen 333 SSATNVSDSDDVQLELDKTKKEIKMLNNALEAREAQLLADEIAKAMLEEEQLNSVTEDLKRKSNESEVSSLREEYHQRVA 412 (961)
T ss_pred CCCccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcccccchHHHHHHHHH
Confidence 3455566777778888888888877654 555442 2223311111111 1267
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHH
Q 045262 205 ELQNRLKLNNMEGRLLNLKIESLQAD 230 (594)
Q Consensus 205 ELe~~L~~k~~Ei~~L~~kI~sLE~E 230 (594)
.||+-.-+.+-|-|-|++.+.+|..|
T Consensus 413 ~lEkKvqa~~kERDalr~e~kslk~e 438 (961)
T KOG4673|consen 413 TLEKKVQALTKERDALRREQKSLKKE 438 (961)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 77777777777777788887777666
No 95
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=94.35 E-value=6.2 Score=39.39 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 045262 168 EVKNLKNMVQMLQDREKNLE 187 (594)
Q Consensus 168 EI~~LR~lVeeLqERE~~LE 187 (594)
.|..|++.|.+|+.+=..|.
T Consensus 13 ki~~L~n~l~elq~~l~~l~ 32 (194)
T PF15619_consen 13 KIKELQNELAELQRKLQELR 32 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566666666665544433
No 96
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.33 E-value=14 Score=43.41 Aligned_cols=205 Identities=18% Similarity=0.179 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh-hchhhHHHHHHHHHHHHhhhhhhHHHHHHH----HHHHHHHHHHHHHHHH--
Q 045262 168 EVKNLKNMVQMLQDREKNLEVELLEYY-GLKEQETIVMELQNRLKLNNMEGRLLNLKI----ESLQADNRRLEAQVAD-- 240 (594)
Q Consensus 168 EI~~LR~lVeeLqERE~~LE~ELLEyy-~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI----~sLE~En~RLq~qv~e-- 240 (594)
....|+.+-+.++.+|..|+-++++-- .+++-...+-+|-+.+..+.+|..-|..+. ..++-+-.-+...+..
T Consensus 106 ~~~~l~~~q~a~~~~e~~lq~q~e~~~n~~q~~~~k~~el~~e~~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~ 185 (716)
T KOG4593|consen 106 LLTRLRQLQEALKGQEEKLQEQLERNRNQCQANLKKELELLREKEDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLH 185 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677777888889999999988887 666666667777777777776666665554 3333332222222211
Q ss_pred --HHhHHHHHHHHHHHHHHHHHHHHHH------HHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHH----
Q 045262 241 --HAKTVSELEAAKTKIKLLKKKLRTE------AEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLE---- 308 (594)
Q Consensus 241 --~~~v~~ELE~ar~kir~LqkKl~~~------a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE---- 308 (594)
.....++|..-..++....+++... ..+.++|+.-.-++++.....+..- ..+.-.+|.+.+|+
T Consensus 186 s~l~~~eke~~~~~~ql~~~~q~~~~~~~~l~e~~~~~qq~a~~~~ql~~~~ele~i~----~~~~dqlqel~~l~~a~~ 261 (716)
T KOG4593|consen 186 SELQNEEKELDRQHKQLQEENQKIQELQASLEERADHEQQNAELEQQLSLSEELEAIN----KNMKDQLQELEELERALS 261 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 1122223333333333333333221 1223344444444444442222111 12222333334443
Q ss_pred ---HHHH---HHHHHhHHHHHHhhHhHHhhhhhhhhhhcc----hhh-hHH------HHHHHHHHHHHHhhHHHHHHHHH
Q 045262 309 ---AEAE---DLRKSNMKLQLENSQLARRLESTQMLEISV----LED-GER------EALNEMSQRLREENTSLSKEVEK 371 (594)
Q Consensus 309 ---~Ev~---ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~----~E~-~ev------~~i~ee~~~LR~~NedL~kQVEq 371 (594)
.|+. +.++++.-||.|+..|-.||--++...... .++ ... +.+..+++.+ ++-++++.++.-
T Consensus 262 q~~ee~~~~re~~~tv~~LqeE~e~Lqskl~~~~~l~~~~~~LELeN~~l~tkL~rwE~~~~~~~~~-~~~~~~~~~~~~ 340 (716)
T KOG4593|consen 262 QLREELATLRENRETVGLLQEELEGLQSKLGRLEKLQSTLLGLELENEDLLTKLQRWERADQEMGSL-RTPEDLMEKLVN 340 (716)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhhhcc-CCHHHHHHHHHH
Confidence 3444 677888899999999988887777644321 111 111 2223333333 345666666666
Q ss_pred Hhhhhc
Q 045262 372 LHADKC 377 (594)
Q Consensus 372 Lq~dRf 377 (594)
++..++
T Consensus 341 e~s~~~ 346 (716)
T KOG4593|consen 341 EQSRNA 346 (716)
T ss_pred HHHHHh
Confidence 665544
No 97
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.29 E-value=10 Score=43.56 Aligned_cols=83 Identities=22% Similarity=0.271 Sum_probs=51.0
Q ss_pred HHHHHHHHHhhhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHhHHHHHHHHH
Q 045262 203 VMELQNRLKLNNMEGR-LLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLK---KKLRTEAEQNREQILAVQE 278 (594)
Q Consensus 203 v~ELe~~L~~k~~Ei~-~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~Lq---kKl~~~a~q~K~qi~~Lkq 278 (594)
.-+++.+|+.+=...- -...+|+.|++.|..|.+++.+..+.-.-++-.|.+.+.|| +|++.-..+.+..-...-+
T Consensus 215 ~~~~~~Elk~~l~~~~~~i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~ 294 (581)
T KOG0995|consen 215 SSELEDELKHRLEKYFTSIANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEK 294 (581)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHH
Confidence 5555566554433332 26677788888888888888866666666666676666666 4455555555555555555
Q ss_pred HHHHHHH
Q 045262 279 RVTKLQE 285 (594)
Q Consensus 279 ~v~~Lq~ 285 (594)
.+.+++.
T Consensus 295 ~l~~l~~ 301 (581)
T KOG0995|consen 295 KLEMLKS 301 (581)
T ss_pred HHHHHHH
Confidence 5555553
No 98
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=94.26 E-value=2.6 Score=45.68 Aligned_cols=115 Identities=21% Similarity=0.203 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-
Q 045262 170 KNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSEL- 248 (594)
Q Consensus 170 ~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~EL- 248 (594)
+.||..-+.++||....+.=-+---.|+.|-..++++ +.--..++..|.-.|..+.+||.+|+.++.++..-..|-
T Consensus 85 eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~v---f~k~k~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~Eke 161 (401)
T PF06785_consen 85 EGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREV---FMKTKGDIQHLEGLIRHLREENQCLQLQLDALQQECGEKE 161 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH---HHHhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHhH
Confidence 4566666777777654433222233444554444442 233456788888999999999999999999998877666
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 045262 249 EAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQA 287 (594)
Q Consensus 249 E~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E 287 (594)
|.+..=+|+|-.-+...+.=+-+.-..+-++-+.|..+.
T Consensus 162 eesq~LnrELaE~layqq~L~~eyQatf~eq~~ml~kRQ 200 (401)
T PF06785_consen 162 EESQTLNRELAEALAYQQELNDEYQATFVEQHSMLDKRQ 200 (401)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccchhhhHHHH
Confidence 566666777766555555545444444445555555544
No 99
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.22 E-value=7.7 Score=46.19 Aligned_cols=35 Identities=20% Similarity=0.415 Sum_probs=23.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhH
Q 045262 295 PDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLA 329 (594)
Q Consensus 295 ~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~ 329 (594)
-|++.|++.+.-+-+.+.|||....-+|..+++|-
T Consensus 556 kE~esk~~eidi~n~qlkelk~~~~~q~lake~~y 590 (1118)
T KOG1029|consen 556 KETESKLNEIDIFNNQLKELKEDVNSQQLAKEELY 590 (1118)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666677777777777777776666653
No 100
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=94.22 E-value=6.6 Score=42.92 Aligned_cols=26 Identities=8% Similarity=0.179 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045262 169 VKNLKNMVQMLQDREKNLEVELLEYY 194 (594)
Q Consensus 169 I~~LR~lVeeLqERE~~LE~ELLEyy 194 (594)
+.-|...+..++.+=...+.+|..|.
T Consensus 163 ~~fl~~ql~~~~~~L~~ae~~l~~f~ 188 (498)
T TIGR03007 163 QRFIDEQIKTYEKKLEAAENRLKAFK 188 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555556666553
No 101
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=94.22 E-value=16 Score=44.59 Aligned_cols=77 Identities=21% Similarity=0.224 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHhhhc---hhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 045262 166 EQEVKNLKNMVQMLQDREK-------NLEVELLEYYGL---KEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLE 235 (594)
Q Consensus 166 e~EI~~LR~lVeeLqERE~-------~LE~ELLEyy~L---KEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq 235 (594)
.-+++.++..|++|++=-. -|+.||-.|.-= -.=|+.|..|+..|.--.++-+....+++.|..||..|+
T Consensus 256 lmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr~kteeL~eEnstLq 335 (1195)
T KOG4643|consen 256 LMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDRHKTEELHEENSTLQ 335 (1195)
T ss_pred hhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 3467778888888877622 234444333211 123577888888888888899999999999999999998
Q ss_pred HHHHHHH
Q 045262 236 AQVADHA 242 (594)
Q Consensus 236 ~qv~e~~ 242 (594)
-+-+.+.
T Consensus 336 ~q~eqL~ 342 (1195)
T KOG4643|consen 336 VQKEQLD 342 (1195)
T ss_pred HHHHHhh
Confidence 6665443
No 102
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=94.12 E-value=0.75 Score=52.78 Aligned_cols=92 Identities=20% Similarity=0.419 Sum_probs=57.7
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Q 045262 211 KLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKA 290 (594)
Q Consensus 211 ~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~ 290 (594)
.....++..|..+++.|+.||.-|+..+.++. .+++..++++..+++++....... .++.++..++..|+.+
T Consensus 418 ~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k---~eie~L~~~l~~~~r~~~~~~~~~-rei~~~~~~I~~L~~~---- 489 (652)
T COG2433 418 TVYEKRIKKLEETVERLEEENSELKRELEELK---REIEKLESELERFRREVRDKVRKD-REIRARDRRIERLEKE---- 489 (652)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHH----
Confidence 34455677888888888888888888777765 555666677777777776443333 3455666666666544
Q ss_pred hcCChhHHHHHHHHHHHHHHHHHHHH
Q 045262 291 AAIDPDTQSRLQRLKVLEAEAEDLRK 316 (594)
Q Consensus 291 ~~~d~E~ekKlq~lkeLE~Ev~ELRr 316 (594)
++.+-.++..|+.+..+|++
T Consensus 490 ------L~e~~~~ve~L~~~l~~l~k 509 (652)
T COG2433 490 ------LEEKKKRVEELERKLAELRK 509 (652)
T ss_pred ------HHHHHHHHHHHHHHHHHHHH
Confidence 33334445555555555553
No 103
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=93.95 E-value=3.7 Score=48.22 Aligned_cols=83 Identities=18% Similarity=0.232 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 045262 166 EQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTV 245 (594)
Q Consensus 166 e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~ 245 (594)
.++|..+++.+..|++|=.-+|-+|---..+ ..++++|..|.-.+.++-+-..+-...++-.++|..++.+..
T Consensus 104 da~lrq~eekn~slqerLelaE~~l~qs~ra----e~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~n--- 176 (916)
T KOG0249|consen 104 DADLRQNEEKNRSLQERLELAEPKLQQSLRA----ETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELN--- 176 (916)
T ss_pred chhhchhHHhhhhhhHHHHHhhHhhHhHHhh----hhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH---
Confidence 4677788888888888866666665443332 557777888777777777777777777777777776665543
Q ss_pred HHHHHHHHHH
Q 045262 246 SELEAAKTKI 255 (594)
Q Consensus 246 ~ELE~ar~ki 255 (594)
.||..|+-+.
T Consensus 177 aeL~rarqre 186 (916)
T KOG0249|consen 177 AELQRARQRE 186 (916)
T ss_pred HHHHHHHHHH
Confidence 4555555443
No 104
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.92 E-value=2.1 Score=48.24 Aligned_cols=110 Identities=19% Similarity=0.276 Sum_probs=80.3
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 045262 203 VMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTK 282 (594)
Q Consensus 203 v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~ 282 (594)
-.+|..+|+....+++..+..|..+.+...+|+ .+++..+..++.+|.|..+|.++|=+.+- |+.+
T Consensus 336 F~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLq---k~~ad~~~KI~~~k~r~~~Ls~RiLRv~i---------kqei-- 401 (508)
T KOG3091|consen 336 FEDLRQRLKVQDQEVKQHRIRINAIGERVTELQ---KHHADAVAKIEEAKNRHVELSHRILRVMI---------KQEI-- 401 (508)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHHHHHHHHHHHH---------HHHH--
Confidence 357999999999999999999999999999999 78888899999999999999988765432 2222
Q ss_pred HHHHHHHhhcCChhHHHHHHHHH-HHHHHHHHHHHHhHHHHHHhhH
Q 045262 283 LQEQAHKAAAIDPDTQSRLQRLK-VLEAEAEDLRKSNMKLQLENSQ 327 (594)
Q Consensus 283 Lq~~E~e~~~~d~E~ekKlq~lk-eLE~Ev~ELRr~NkeLQ~EKre 327 (594)
+.......-..+.+|..|++.|- .|+.= .||+++...|+..-+-
T Consensus 402 lr~~G~~L~~~EE~Lr~Kldtll~~ln~P-nq~k~Rl~~L~e~~r~ 446 (508)
T KOG3091|consen 402 LRKRGYALTPDEEELRAKLDTLLAQLNAP-NQLKARLDELYEILRM 446 (508)
T ss_pred HhccCCcCCccHHHHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHHh
Confidence 22222222233356777777653 33333 7888888888776544
No 105
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=93.78 E-value=0.58 Score=45.71 Aligned_cols=50 Identities=34% Similarity=0.378 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHH
Q 045262 303 RLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKE 368 (594)
Q Consensus 303 ~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQ 368 (594)
++++|+.++.|+.+.+..|+.|---|-+.+..++ +....|..+|.+|.+-
T Consensus 131 ~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e----------------~k~~~l~~En~~Lv~R 180 (194)
T PF08614_consen 131 KIKDLEEELKEKNKANEILQDELQALQLQLNMLE----------------EKLRKLEEENRELVER 180 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHH
Confidence 4788888888888888888888766644443333 3345566667666553
No 106
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=93.67 E-value=4.3 Score=47.32 Aligned_cols=114 Identities=22% Similarity=0.200 Sum_probs=75.6
Q ss_pred hhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 045262 197 KEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAV 276 (594)
Q Consensus 197 KEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~L 276 (594)
.+.+..+..+..+|.....-+........+++.++..|++.+. .+..++.+++.|+......-++ |..|
T Consensus 178 ~~~~~~~~~~~~~l~~v~~~~~~~~~~l~~~~~~~~~l~~~~~-------~~~~~~~~~~~l~~~~~~~~~~----i~~l 246 (670)
T KOG0239|consen 178 LKLESDLGDLVTELEHVTNSISELESVLKSAQEERRVLADSLG-------NYADLRRNIKPLEGLESTIKKK----IQAL 246 (670)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-------hhhhHHHhhhhhhhhhhHHHHH----HHHH
Confidence 3445557777777777777777777777778888888887776 4455555666655444433333 7777
Q ss_pred HHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhh
Q 045262 277 QERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQML 338 (594)
Q Consensus 277 kq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~ 338 (594)
++++..|+.. +..|...+..+.+.+.+.....+.+...|..++..
T Consensus 247 ~~~l~~l~~~-----------------~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~ 291 (670)
T KOG0239|consen 247 QQELEELKAE-----------------LKELNDQVSLLTREVQEALKESNTLQSDLESLEEN 291 (670)
T ss_pred HHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777654 55666777777777777777766665555555443
No 107
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=93.64 E-value=20 Score=42.76 Aligned_cols=77 Identities=26% Similarity=0.249 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHH-HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 045262 172 LKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRL-KLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSEL 248 (594)
Q Consensus 172 LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L-~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~EL 248 (594)
|+..++.+.++...|+..+-.|-.++-+-..+..++.+. ......++.+...+..++...++|+....+......++
T Consensus 230 l~~e~e~l~~~~~el~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~~ 307 (908)
T COG0419 230 LEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEEL 307 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455677777777777776666665433333333333333 23344445555555555555555444444443333333
No 108
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=93.49 E-value=22 Score=43.59 Aligned_cols=153 Identities=18% Similarity=0.177 Sum_probs=82.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045262 164 DCEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAK 243 (594)
Q Consensus 164 d~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~ 243 (594)
|+..||++||+-|...+++.=-.-.| ..+...+.+...+...|+.+..+|..++.+...|++...-...
T Consensus 408 d~~~EIerLK~dl~AaReKnGvyise-----------e~y~~~e~e~~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~ 476 (1041)
T KOG0243|consen 408 DLYEEIERLKRDLAAAREKNGVYISE-----------ERYTQEEKEKKEMAEQIEELEEELENLEKQLKDLTELYMNQLE 476 (1041)
T ss_pred HHHHHHHHHHHHHHHhHhhCceEech-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 56789999999998888764322221 1122445555566667777777777777777777755543333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 045262 244 TVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQL 323 (594)
Q Consensus 244 v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~ 323 (594)
+..+| +.+...|+.+++.-..+-..---.++|-...|..++.-+ ..-...+.+ +..-+.+||+.+..-|.
T Consensus 477 ~~~~l---~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii-~~~~~se~~------l~~~a~~l~~~~~~s~~ 546 (1041)
T KOG0243|consen 477 IKELL---KEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEII-SQQEKSEEK------LVDRATKLRRSLEESQD 546 (1041)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 33222 222223333333222111111111222222233332211 111112222 33348899999999999
Q ss_pred HhhHhHHhhhhhhh
Q 045262 324 ENSQLARRLESTQM 337 (594)
Q Consensus 324 EKreL~~KL~sAe~ 337 (594)
....|..||+....
T Consensus 547 d~s~l~~kld~~~~ 560 (1041)
T KOG0243|consen 547 DLSSLFEKLDRKDR 560 (1041)
T ss_pred HHHHHHHHhhhhhc
Confidence 99999999988765
No 109
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.43 E-value=22 Score=42.60 Aligned_cols=162 Identities=20% Similarity=0.215 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----H--hhhchhhHHH-HHHHHHHHHhhhhhhHH-----HHHHHHHHHHHHHHH
Q 045262 167 QEVKNLKNMVQMLQDREKNLEVELL----E--YYGLKEQETI-VMELQNRLKLNNMEGRL-----LNLKIESLQADNRRL 234 (594)
Q Consensus 167 ~EI~~LR~lVeeLqERE~~LE~ELL----E--yy~LKEQEa~-v~ELe~~L~~k~~Ei~~-----L~~kI~sLE~En~RL 234 (594)
.|+++=|..+++=|.||..=..+.- + -...+|||-- -.|||++|.. .-||++ -++.|+..|+-.+-|
T Consensus 327 aELerRRq~leeqqqreree~eqkEreE~ekkererqEqErk~qlElekqLer-QReiE~qrEEerkkeie~rEaar~El 405 (1118)
T KOG1029|consen 327 AELERRRQALEEQQQREREEVEQKEREEEEKKERERQEQERKAQLELEKQLER-QREIERQREEERKKEIERREAAREEL 405 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888888888887777653222211 1 1223333322 2344444431 112221 122222222222222
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHhhcC------------------
Q 045262 235 EAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQN---REQILAVQERVTKLQEQAHKAAAI------------------ 293 (594)
Q Consensus 235 q~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~---K~qi~~Lkq~v~~Lq~~E~e~~~~------------------ 293 (594)
+ -..++|.-|+++.+|+.+..++.+.. +++...|.+++..|+.+-.....+
T Consensus 406 E--------kqRqlewErar~qem~~Qk~reqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~ 477 (1118)
T KOG1029|consen 406 E--------KQRQLEWERARRQEMLNQKNREQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEV 477 (1118)
T ss_pred H--------HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHh
Confidence 2 22355666777778877777666554 334444455555554432221111
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhh
Q 045262 294 DPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQM 337 (594)
Q Consensus 294 d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~ 337 (594)
+--.+..+-.+..|-.++.|+...+-.|--|+.+|--+|-..+.
T Consensus 478 ~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq~q~ 521 (1118)
T KOG1029|consen 478 TKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQKQS 521 (1118)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhh
Confidence 11222233334445555566666666666677777666655443
No 110
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=93.28 E-value=9.5 Score=41.73 Aligned_cols=32 Identities=19% Similarity=0.297 Sum_probs=26.5
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 161 EKDDCEQEVKNLKNMVQMLQDREKNLEVELLE 192 (594)
Q Consensus 161 e~~d~e~EI~~LR~lVeeLqERE~~LE~ELLE 192 (594)
++.....++..|+..+..|+.+..+|+.++-.
T Consensus 91 d~~~~~~~~~~~~~~~~~~~~~~~rL~a~~~~ 122 (457)
T TIGR01000 91 DNGNEENQKQLLEQQLDNLKDQKKSLDTLKQS 122 (457)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456789999999999999999999888753
No 111
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=93.17 E-value=13 Score=39.26 Aligned_cols=38 Identities=24% Similarity=0.244 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhh
Q 045262 295 PDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRL 332 (594)
Q Consensus 295 ~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL 332 (594)
.+++.-.+.+.++..++.++|+...+|+.+...+..++
T Consensus 209 ~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i 246 (325)
T PF08317_consen 209 EELEALRQELAEQKEEIEAKKKELAELQEELEELEEKI 246 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455566666666666666666666666654443
No 112
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=93.17 E-value=11 Score=39.39 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 165 CEQEVKNLKNMVQMLQDREKNLEVELL 191 (594)
Q Consensus 165 ~e~EI~~LR~lVeeLqERE~~LE~ELL 191 (594)
...++..|+..+..|+.+-.+|+.++-
T Consensus 79 ~~~~l~~l~~~~~~l~a~~~~l~~~~~ 105 (423)
T TIGR01843 79 VEADAAELESQVLRLEAEVARLRAEAD 105 (423)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 355777777777777766666665443
No 113
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=93.16 E-value=24 Score=42.17 Aligned_cols=46 Identities=15% Similarity=0.081 Sum_probs=26.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhh
Q 045262 295 PDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEI 340 (594)
Q Consensus 295 ~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~ 340 (594)
.||......+..-+.+|.-|++....|+...++=..+|+.+.....
T Consensus 378 ~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd~ql~~~k~Rl~ 423 (775)
T PF10174_consen 378 GEIEDLRDMLDKKERKINVLQKKIENLEEQLREKDRQLDEEKERLS 423 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4555555555556666666666666666655555555555554443
No 114
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=93.10 E-value=23 Score=41.91 Aligned_cols=123 Identities=26% Similarity=0.284 Sum_probs=72.6
Q ss_pred HhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH----HHHHHH---HHHH
Q 045262 192 EYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTK----IKLLKK---KLRT 264 (594)
Q Consensus 192 Eyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~k----ir~Lqk---Kl~~ 264 (594)
|-+-|+|.-+.=..|.++|..-..|++-++..+...++||.||.....++....+.+|.-|.+ ||+++- ++-.
T Consensus 18 Ee~Ll~esa~~E~~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~ 97 (717)
T PF09730_consen 18 EESLLQESASKEAYLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQ 97 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444444555555556777788888888899999888888777777766544433 333331 1112
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhh
Q 045262 265 EAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLEST 335 (594)
Q Consensus 265 ~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sA 335 (594)
+...-.++-..|+++|+.|+ .=-+|++-|+--+++|++|..-|--+|+.|
T Consensus 98 dyselEeENislQKqvs~Lk---------------------~sQvefE~~Khei~rl~Ee~~~l~~qlee~ 147 (717)
T PF09730_consen 98 DYSELEEENISLQKQVSVLK---------------------QSQVEFEGLKHEIKRLEEEIELLNSQLEEA 147 (717)
T ss_pred hhHHHHHHHHHHHHHHHHHH---------------------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233444555555555554 444666678888888888876664444433
No 115
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=93.01 E-value=20 Score=40.86 Aligned_cols=188 Identities=17% Similarity=0.182 Sum_probs=109.6
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 045262 203 VMELQNRLKLNNMEGRLLNLKIESLQADNRR-------LEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILA 275 (594)
Q Consensus 203 v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~R-------Lq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~ 275 (594)
+..|+.++..+..||..|...+..|..+..+ ++.+.++--.+-.+|+....++..|.+-|...--.+.+-+..
T Consensus 332 l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V~~~~leaq~~~~s 411 (622)
T COG5185 332 LEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSVKSRKLEAQGIFKS 411 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHhHHHHHHHHHHH
Confidence 6667777788888888888888888777443 667778888888888888888888887776443333333333
Q ss_pred HHHHHHHHHHHHHHh---------hcCCh-----------------------------hHHHHHHHH----HHHHHHHHH
Q 045262 276 VQERVTKLQEQAHKA---------AAIDP-----------------------------DTQSRLQRL----KVLEAEAED 313 (594)
Q Consensus 276 Lkq~v~~Lq~~E~e~---------~~~d~-----------------------------E~ekKlq~l----keLE~Ev~E 313 (594)
|...|-.+..--..+ ..+|. ++....... =.||.-+-+
T Consensus 412 lek~~~~~~sl~~~i~~~~~~i~~~~nd~~l~iN~E~~~~~~sg~~~~I~~~i~eln~~i~~~~~~e~nksi~Lee~i~~ 491 (622)
T COG5185 412 LEKTLRQYDSLIQNITRSRSQIGHNVNDSSLKINIEQLFPKGSGINESIKKSILELNDEIQERIKTEENKSITLEEDIKN 491 (622)
T ss_pred HHHHHHHHHHHHHHhcccHHHHhhcCCCCceeeccccCCccccCchHhHHHHHHHHhHHHHHHHHHHhccceeHHHHhhh
Confidence 333333332211111 11121 111111111 125666677
Q ss_pred HHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHh---hhhcchhhHH------H
Q 045262 314 LRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLH---ADKCAGVEEL------V 384 (594)
Q Consensus 314 LRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQVEqLq---~dRfseVEEL------V 384 (594)
+.-...+|+.+.+-+..+|..|-...+-.-+. ..+|..+.|-+-+.|-+++-+|. +.-..+.|++ +
T Consensus 492 ~~~~i~El~~~l~~~e~~L~~a~s~~~~~ke~-----~e~e~~a~~~E~eklE~el~~lnL~s~ts~l~~eq~vqs~~i~ 566 (622)
T COG5185 492 LKHDINELTQILEKLELELSEANSKFELSKEE-----NERELVAQRIEIEKLEKELNDLNLLSKTSILDAEQLVQSTEIK 566 (622)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHHHHHHHHHHHHhhhhccchHhhHHHHHHHHHhh
Confidence 77777888888888888888887665422111 12334445555566666666553 2233344444 4
Q ss_pred HHHHHHHHHHH
Q 045262 385 YLKWINACLRY 395 (594)
Q Consensus 385 YLRWVNACLR~ 395 (594)
-=+-.|+|-||
T Consensus 567 ld~~~~~~n~~ 577 (622)
T COG5185 567 LDELKVDLNRK 577 (622)
T ss_pred HHHHHHHHHHH
Confidence 44667888765
No 116
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.97 E-value=16 Score=43.82 Aligned_cols=46 Identities=22% Similarity=0.359 Sum_probs=27.5
Q ss_pred hhhc-hhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 045262 193 YYGL-KEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQV 238 (594)
Q Consensus 193 yy~L-KEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv 238 (594)
|||| ++|.+.+..|+.+.+.-+.|.+.|+-++..+.++...|.+|+
T Consensus 662 yK~lI~~lD~~~e~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~ 708 (970)
T KOG0946|consen 662 YKGLIRELDYQIENLKQMEKELQVENEELEEEVQDFISEHSQLKDQL 708 (970)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555 566666666666666666666666666655555555444433
No 117
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=92.85 E-value=6.6 Score=46.16 Aligned_cols=88 Identities=20% Similarity=0.243 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 045262 168 EVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSE 247 (594)
Q Consensus 168 EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~E 247 (594)
=+.-|-..++.|++ .|- ..|+.+..+++.++..-..+.+....+|..|+.+.+.|++.... +.+.
T Consensus 537 ~l~lL~~a~~vlre-----------eYi-~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~---LaeR 601 (717)
T PF10168_consen 537 CLELLSQATKVLRE-----------EYI-EKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEK---LAER 601 (717)
T ss_pred HHHHHHHHHHHHHH-----------HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 34555666666654 222 23566788888888888888888888888888888888754443 3356
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q 045262 248 LEAAKTKIKLLKKKLRTEAEQNR 270 (594)
Q Consensus 248 LE~ar~kir~LqkKl~~~a~q~K 270 (594)
++.|+.+-+.|.+|++.......
T Consensus 602 ~e~a~d~Qe~L~~R~~~vl~~l~ 624 (717)
T PF10168_consen 602 YEEAKDKQEKLMKRVDRVLQLLN 624 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888888776665543
No 118
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.80 E-value=9.8 Score=45.48 Aligned_cols=78 Identities=18% Similarity=0.171 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHH--HHhhHHHHHHHHHH
Q 045262 295 PDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRL--REENTSLSKEVEKL 372 (594)
Q Consensus 295 ~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~L--R~~NedL~kQVEqL 372 (594)
.++++++.++...-..+.+|.-+++-|-.++.....||..-+....... -.+++.-|....| --+++-|.|.|++-
T Consensus 820 eq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~--nli~~ltEk~~sl~~qadse~l~ka~~~~ 897 (970)
T KOG0946|consen 820 EQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGN--NLIKELTEKISSLEAQADSETLSKALKTV 897 (970)
T ss_pred HHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhh--hHHHHHhhhhhhHHHhhcchHHHHHHHHh
Confidence 3455666666666666666666666666666666666665555443221 1222222332222 23466677777776
Q ss_pred hh
Q 045262 373 HA 374 (594)
Q Consensus 373 q~ 374 (594)
++
T Consensus 898 k~ 899 (970)
T KOG0946|consen 898 KS 899 (970)
T ss_pred hc
Confidence 66
No 119
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=92.63 E-value=28 Score=41.60 Aligned_cols=20 Identities=35% Similarity=0.376 Sum_probs=10.4
Q ss_pred HHHHHHHhhHHHHHHHHHHh
Q 045262 354 MSQRLREENTSLSKEVEKLH 373 (594)
Q Consensus 354 e~~~LR~~NedL~kQVEqLq 373 (594)
.....+...+.+.++++.+.
T Consensus 720 ~l~~~~~~~~~~~~~~~~~~ 739 (908)
T COG0419 720 ELESRKAELEELKKELEKLE 739 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555
No 120
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=92.57 E-value=11 Score=44.53 Aligned_cols=81 Identities=26% Similarity=0.323 Sum_probs=60.7
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 163 DDCEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHA 242 (594)
Q Consensus 163 ~d~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~ 242 (594)
.+.+.+..+||.-+++++.||.+| |-+|-.|.|--..+...=.-|+-..+|.+-++..|..|++|+.-|..|+.+..
T Consensus 72 ~~~e~~~~~lr~e~ke~K~rE~rl---l~dyselEeENislQKqvs~Lk~sQvefE~~Khei~rl~Ee~~~l~~qlee~~ 148 (717)
T PF09730_consen 72 EDLELERKRLREEIKEYKFREARL---LQDYSELEEENISLQKQVSVLKQSQVEFEGLKHEIKRLEEEIELLNSQLEEAA 148 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345778999999999999999998 44555554433333333333445668888899999999999999999999988
Q ss_pred hHHH
Q 045262 243 KTVS 246 (594)
Q Consensus 243 ~v~~ 246 (594)
.++.
T Consensus 149 rLk~ 152 (717)
T PF09730_consen 149 RLKE 152 (717)
T ss_pred HHHH
Confidence 7765
No 121
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=92.57 E-value=9.8 Score=36.19 Aligned_cols=63 Identities=17% Similarity=0.218 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q 045262 303 RLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHA 374 (594)
Q Consensus 303 ~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQVEqLq~ 374 (594)
++.-||.++...-...+.....-++.-++.+..+- -|..+..+.+.+-.-++.|..++..+++
T Consensus 81 riq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eR---------kv~~le~~~~~~E~k~eel~~k~~~~k~ 143 (143)
T PF12718_consen 81 RIQLLEEELEEAEKKLKETTEKLREADVKAEHFER---------KVKALEQERDQWEEKYEELEEKYKEAKK 143 (143)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---------HHHHHHhhHHHHHHHHHHHHHHHHHhcC
Confidence 35557777766666665555555554444333322 2344555666666667777777776653
No 122
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=92.56 E-value=42 Score=43.52 Aligned_cols=28 Identities=25% Similarity=0.009 Sum_probs=20.0
Q ss_pred HHHHHHHHHhhhhcchhhHHHHHHHHHH
Q 045262 364 SLSKEVEKLHADKCAGVEELVYLKWINA 391 (594)
Q Consensus 364 dL~kQVEqLq~dRfseVEELVYLRWVNA 391 (594)
+...-+||+.+.|..+-|+|+-.+-.++
T Consensus 1480 ~~~~~le~~k~e~~~e~e~~~~~~~~~~ 1507 (1822)
T KOG4674|consen 1480 SKSENLEGTKKELESEKEELKQRLTELA 1507 (1822)
T ss_pred HHHHhHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3446778888888888888877665554
No 123
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=92.30 E-value=23 Score=39.94 Aligned_cols=87 Identities=25% Similarity=0.337 Sum_probs=45.4
Q ss_pred hhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-HHHH--------------HHHHHHHHHhHHHHHHHHHHHHHH
Q 045262 193 YYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQA-DNRR--------------LEAQVADHAKTVSELEAAKTKIKL 257 (594)
Q Consensus 193 yy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~-En~R--------------Lq~qv~e~~~v~~ELE~ar~kir~ 257 (594)
...|+.+......|+..|.....+|..|...+....+ +... |...-.++..+...|+.++..+..
T Consensus 227 l~~L~~e~~~~k~Le~kL~~a~~~l~~Lq~El~~~~~~~l~~~~~~~~~~~~~~~~l~s~~~ELe~ak~~L~~~k~E~~~ 306 (522)
T PF05701_consen 227 LEELKEELEAAKDLESKLAEASAELESLQAELEAAKESKLEEEAEAKEKSSELQSSLASAKKELEEAKKELEKAKEEASS 306 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666777777777777777777766654443 1111 333334444444444444445455
Q ss_pred HHHH---HHHHHHHhHHHHHHHHHH
Q 045262 258 LKKK---LRTEAEQNREQILAVQER 279 (594)
Q Consensus 258 LqkK---l~~~a~q~K~qi~~Lkq~ 279 (594)
|+.. |+.+.++.|..+..++++
T Consensus 307 L~~~vesL~~ELe~~K~el~~lke~ 331 (522)
T PF05701_consen 307 LRASVESLRSELEKEKEELERLKER 331 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5533 233444445555444443
No 124
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=92.23 E-value=14 Score=37.04 Aligned_cols=31 Identities=26% Similarity=0.230 Sum_probs=13.6
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 045262 203 VMELQNRLKLNNMEGRLLNLKIESLQADNRR 233 (594)
Q Consensus 203 v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~R 233 (594)
|.+|+|+|.....+++.|...-..|..-..|
T Consensus 14 i~~L~n~l~elq~~l~~l~~ENk~Lk~lq~R 44 (194)
T PF15619_consen 14 IKELQNELAELQRKLQELRKENKTLKQLQKR 44 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443333
No 125
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=92.18 E-value=37 Score=42.02 Aligned_cols=61 Identities=15% Similarity=0.261 Sum_probs=30.6
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 045262 203 VMELQNRLKLNNMEGRLLNLKIESLQADNRRLEA-QVADHAKTVSELEAAKTKIKLLKKKLR 263 (594)
Q Consensus 203 v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~-qv~e~~~v~~ELE~ar~kir~LqkKl~ 263 (594)
..++..++.....++..++.+|..++......+. .+.+...-+.++..|+..+..|+..+.
T Consensus 308 ~~~~~~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~~~l~~~~~~~~~l~~~~~ 369 (1201)
T PF12128_consen 308 RDELNKELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARVDQLPEWRNELENLQEQLD 369 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3344455555556666666666666666555442 244444444444444444444443333
No 126
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=92.13 E-value=30 Score=40.88 Aligned_cols=169 Identities=19% Similarity=0.152 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHH-HHHHHHHH---hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045262 168 EVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIV-MELQNRLK---LNNMEGRLLNLKIESLQADNRRLEAQVADHAK 243 (594)
Q Consensus 168 EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v-~ELe~~L~---~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~ 243 (594)
++..|+.+++..+.=...+++==-.|-.++||-..+ .+|..... .-..+-...+.++..|..+...|..++.....
T Consensus 438 ~~e~Lqk~~~~~k~ll~e~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~ 517 (698)
T KOG0978|consen 438 LSEELQKKEKNFKCLLSEMETIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKA 517 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444422333333333444454444432 22222221 12334455566667777777777777776665
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHH----------HHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 045262 244 TVSELEAAKTK----IKLLKKKLRTEA----------EQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEA 309 (594)
Q Consensus 244 v~~ELE~ar~k----ir~LqkKl~~~a----------~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~ 309 (594)
.+.-+..--.+ .+.|+..+.... +..+..+.-+++.+.-||.+-. +..+.++.=-..+.+++.
T Consensus 518 ~~~~~~~~i~~leeq~~~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~e---k~~~~le~i~~~~~e~~~ 594 (698)
T KOG0978|consen 518 SVDKLELKIGKLEEQERGLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELE---KSEAKLEQIQEQYAELEL 594 (698)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 55543322222 222222221111 2223334444444555544322 122233333345678889
Q ss_pred HHHHHHHHhHHHHHHhhHhHHhhhhhhhhh
Q 045262 310 EAEDLRKSNMKLQLENSQLARRLESTQMLE 339 (594)
Q Consensus 310 Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~ 339 (594)
++.-++..+++||.|...|-+||.......
T Consensus 595 ele~~~~k~~rleEE~e~L~~kle~~k~~~ 624 (698)
T KOG0978|consen 595 ELEIEKFKRKRLEEELERLKRKLERLKKEE 624 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999988776544
No 127
>PRK11281 hypothetical protein; Provisional
Probab=92.08 E-value=35 Score=42.40 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045262 166 EQEVKNLKNMVQMLQDREKNLEVELLEYY 194 (594)
Q Consensus 166 e~EI~~LR~lVeeLqERE~~LE~ELLEyy 194 (594)
.++.+.|+..+....++=.....+|.++.
T Consensus 79 ~~~~~~L~k~l~~Ap~~l~~a~~~Le~Lk 107 (1113)
T PRK11281 79 KEETEQLKQQLAQAPAKLRQAQAELEALK 107 (1113)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Confidence 55677777777777666666666666544
No 128
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.97 E-value=26 Score=39.70 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHH
Q 045262 166 EQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMEL 206 (594)
Q Consensus 166 e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~EL 206 (594)
.+||..|...+++..+=....+..+.+|..|+.-.+-..+.
T Consensus 230 ~ee~eel~eq~eeneel~ae~kqh~v~~~ales~~sq~~e~ 270 (521)
T KOG1937|consen 230 EEEVEELTEQNEENEELQAEYKQHLVEYKALESKRSQFEEQ 270 (521)
T ss_pred chhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 45699999999999887778888888888876665544443
No 129
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=91.88 E-value=43 Score=42.14 Aligned_cols=10 Identities=10% Similarity=0.129 Sum_probs=4.4
Q ss_pred HHHHHHhhhc
Q 045262 484 FFHKLRKLVR 493 (594)
Q Consensus 484 Li~KLKKw~~ 493 (594)
.|+.=..||.
T Consensus 1125 ri~~A~~~v~ 1134 (1353)
T TIGR02680 1125 LILAAERQVA 1134 (1353)
T ss_pred HHHHHHHHHH
Confidence 3444444543
No 130
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=91.88 E-value=7.2 Score=38.58 Aligned_cols=68 Identities=22% Similarity=0.306 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 045262 304 LKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKL 372 (594)
Q Consensus 304 lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQVEqL 372 (594)
..+|+.++.+|...+.+|+.+..+|..+++.++........ .+.+...+|++.|+..|..|..++|++
T Consensus 122 ~~~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~ek~~~e~~~-~~~k~~~~ei~~lk~~~~ql~~~l~~~ 189 (189)
T PF10211_consen 122 KQELEEEIEELEEEKEELEKQVQELKNKCEQLEKREEELRQ-EEEKKHQEEIDFLKKQNQQLKAQLEQI 189 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45788888888888888888888888888888876643211 233556788999999999999999864
No 131
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=91.88 E-value=31 Score=40.52 Aligned_cols=38 Identities=26% Similarity=0.360 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 045262 220 LNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKK 260 (594)
Q Consensus 220 L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~Lqk 260 (594)
+..++..||-.++.|+=||.- +.++.++-..||+.|.-
T Consensus 109 yQerLaRLe~dkesL~LQvsv---LteqVeaQgEKIrDLE~ 146 (861)
T KOG1899|consen 109 YQERLARLEMDKESLQLQVSV---LTEQVEAQGEKIRDLET 146 (861)
T ss_pred HHHHHHHHhcchhhheehHHH---HHHHHHHhhhhHHHHHH
Confidence 334444444444444433332 22333444455555543
No 132
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=91.74 E-value=12 Score=37.79 Aligned_cols=93 Identities=23% Similarity=0.302 Sum_probs=57.8
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 045262 203 VMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTK 282 (594)
Q Consensus 203 v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~ 282 (594)
+.+.-++|..--.||..|+ ..|+||+++=.++.-+.=-|.-.|.|.|.|-+.-|+-...+ +-.+++.|+.
T Consensus 43 m~evNrrlQ~hl~EIR~LK-------e~NqkLqedNqELRdLCCFLDddRqKgrklarEWQrFGryt---a~vmr~eV~~ 112 (195)
T PF10226_consen 43 MKEVNRRLQQHLNEIRGLK-------EVNQKLQEDNQELRDLCCFLDDDRQKGRKLAREWQRFGRYT---ASVMRQEVAQ 112 (195)
T ss_pred HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHcccchhHHHhHHHhHHHHHhhhHH---HHHHHHHHHH
Confidence 5555555555555555554 44555554444444445555567777776665555555444 5567888888
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 045262 283 LQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQ 322 (594)
Q Consensus 283 Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ 322 (594)
.+.+ |++||..-.+|-+-|.+|-
T Consensus 113 Y~~K-----------------L~eLE~kq~~L~rEN~eLK 135 (195)
T PF10226_consen 113 YQQK-----------------LKELEDKQEELIRENLELK 135 (195)
T ss_pred HHHH-----------------HHHHHHHHHHHHHhHHHHH
Confidence 7744 8889888888887776653
No 133
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=91.72 E-value=13 Score=35.74 Aligned_cols=156 Identities=19% Similarity=0.174 Sum_probs=93.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHH---------HHHHHHhhhhhhHHHHHHHH----HHHHHH
Q 045262 165 CEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVME---------LQNRLKLNNMEGRLLNLKIE----SLQADN 231 (594)
Q Consensus 165 ~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~E---------Le~~L~~k~~Ei~~L~~kI~----sLE~En 231 (594)
...+|..+|--.-.|+-.-.+++.+|-..-.|-|--..|-. |...+..++.|+-.|..++. .|.--.
T Consensus 4 k~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~k 83 (177)
T PF13870_consen 4 KRNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVK 83 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35688888888889999999999988887777666555443 44445555556555555442 222233
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCCh--hHHHHHHHHHHHHH
Q 045262 232 RRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDP--DTQSRLQRLKVLEA 309 (594)
Q Consensus 232 ~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~--E~ekKlq~lkeLE~ 309 (594)
++|..-..++..+..+|..... ...+++.+..+.+.+...+......|+.+.......+- +.......+.+|+.
T Consensus 84 eKl~~~~~~~~~l~~~l~~~~~----~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~~~P~ll~Dy~~~~~~~~~l~~ 159 (177)
T PF13870_consen 84 EKLHFLSEELERLKQELKDREE----ELAKLREELYRVKKERDKLRKQNKKLRQQGGLLGVPALLRDYDKTKEEVEELRK 159 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444432222 22444555566677777777777777765422212221 34556677777888
Q ss_pred HHHHHHHHhHHHHHH
Q 045262 310 EAEDLRKSNMKLQLE 324 (594)
Q Consensus 310 Ev~ELRr~NkeLQ~E 324 (594)
.|..|++....|+..
T Consensus 160 ~i~~l~rk~~~l~~~ 174 (177)
T PF13870_consen 160 EIKELERKVEILEMR 174 (177)
T ss_pred HHHHHHHHHHHHHHh
Confidence 888888877777653
No 134
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=91.61 E-value=9.6 Score=36.54 Aligned_cols=29 Identities=28% Similarity=0.350 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhHhHHhh
Q 045262 304 LKVLEAEAEDLRKSNMKLQLENSQLARRL 332 (594)
Q Consensus 304 lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL 332 (594)
++++..++.+++....+++.....|..++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 181 (191)
T PF04156_consen 153 LQDSREEVQELRSQLERLQENLQQLEEKI 181 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555554443
No 135
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=91.60 E-value=21 Score=37.89 Aligned_cols=124 Identities=17% Similarity=0.149 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 045262 173 KNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAK 252 (594)
Q Consensus 173 R~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar 252 (594)
+.+--+++.+-..++-||-||-. --+|+|.+|.. +++-+.-...-|+++|+||.-++. +-|
T Consensus 19 k~l~~~ykq~f~~~reEl~EFQe------gSrE~Eaeles---qL~q~etrnrdl~t~nqrl~~E~e----------~~K 79 (333)
T KOG1853|consen 19 KLLHHEYKQHFLQMREELNEFQE------GSREIEAELES---QLDQLETRNRDLETRNQRLTTEQE----------RNK 79 (333)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhh------hhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH----------HHH
Confidence 33445667777777777777732 24566666543 444445555567777777764432 222
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhh
Q 045262 253 TKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRL 332 (594)
Q Consensus 253 ~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL 332 (594)
.|. ..-.-|.-+|+-.|...++-+.+. ...|-..|.||-++|..|+--||.-+.-|
T Consensus 80 ek~-------e~q~~q~y~q~s~Leddlsqt~ai-----------------keql~kyiReLEQaNDdLErakRati~sl 135 (333)
T KOG1853|consen 80 EKQ-------EDQRVQFYQQESQLEDDLSQTHAI-----------------KEQLRKYIRELEQANDDLERAKRATIYSL 135 (333)
T ss_pred HHH-------HHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHhccHHHHhhhhhhhhH
Confidence 221 111112222222222222222211 12244456677777888887777666655
Q ss_pred hhhhhhh
Q 045262 333 ESTQMLE 339 (594)
Q Consensus 333 ~sAe~~~ 339 (594)
+.-+.+.
T Consensus 136 eDfeqrL 142 (333)
T KOG1853|consen 136 EDFEQRL 142 (333)
T ss_pred HHHHHHH
Confidence 5555544
No 136
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=91.47 E-value=3.4 Score=47.72 Aligned_cols=85 Identities=27% Similarity=0.326 Sum_probs=59.1
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhH---HHHHHHHHHHHHHHHHHH
Q 045262 160 SEKDDCEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGR---LLNLKIESLQADNRRLEA 236 (594)
Q Consensus 160 ~e~~d~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~---~L~~kI~sLE~En~RLq~ 236 (594)
.+-..+..+|..|.++|+.|++.=..|+.++.++. ..+..|+++|..-.-++. .-+++|..++.++.+|+-
T Consensus 415 ~ei~~~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k------~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~ 488 (652)
T COG2433 415 REITVYEKRIKKLEETVERLEEENSELKRELEELK------REIEKLESELERFRREVRDKVRKDREIRARDRRIERLEK 488 (652)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 35566788999999999999999999988877665 567777777764444333 234556667777777766
Q ss_pred HHHHHHhHHHHHHH
Q 045262 237 QVADHAKTVSELEA 250 (594)
Q Consensus 237 qv~e~~~v~~ELE~ 250 (594)
.+.+-...+++|+.
T Consensus 489 ~L~e~~~~ve~L~~ 502 (652)
T COG2433 489 ELEEKKKRVEELER 502 (652)
T ss_pred HHHHHHHHHHHHHH
Confidence 66666655555553
No 137
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=91.40 E-value=16 Score=36.22 Aligned_cols=104 Identities=17% Similarity=0.155 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhH
Q 045262 218 RLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDT 297 (594)
Q Consensus 218 ~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ 297 (594)
--|...+..|++|..|-..-......++++||.++..|..|..-+.+...+-..=-.-|..+=+.++..+.. .......
T Consensus 60 ~dLe~~l~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ke~~~~~ee~~-~~~y~~~ 138 (182)
T PF15035_consen 60 PDLEEALIRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLTQDWERLRDELEQKEAEWREEEEN-FNQYLSS 138 (182)
T ss_pred ccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhcc
Confidence 345558899999999999888888999999999999999999766655444332111223333445544432 1111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 045262 298 QSRLQRLKVLEAEAEDLRKSNMKLQLE 324 (594)
Q Consensus 298 ekKlq~lkeLE~Ev~ELRr~NkeLQ~E 324 (594)
+ -.++=.|=-+|+-+||.-.+|...
T Consensus 139 e--h~rll~LWr~v~~lRr~f~elr~~ 163 (182)
T PF15035_consen 139 E--HSRLLSLWREVVALRRQFAELRTA 163 (182)
T ss_pred c--ccHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 124666778999999988887754
No 138
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=91.34 E-value=30 Score=39.29 Aligned_cols=114 Identities=14% Similarity=0.214 Sum_probs=73.7
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 045262 202 IVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVT 281 (594)
Q Consensus 202 ~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~ 281 (594)
.+..|+++|......|.. .++...++.+..+..++..+-.+.+.-..|+..+.....++.....+++++...|+..+.
T Consensus 257 ~i~~l~~~i~~~~~~l~~--l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~ 334 (569)
T PRK04778 257 EIQDLKEQIDENLALLEE--LDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEEID 334 (569)
T ss_pred HHHHHHHHHHHHHHHHHh--cChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444433333322 245566677788888888888888877888999999999999999999999999988888
Q ss_pred HHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 045262 282 KLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLE 324 (594)
Q Consensus 282 ~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~E 324 (594)
.++..= . -++.+ +..++.++.++.+|....+.++..
T Consensus 335 ~l~~sY-~--l~~~e----~~~~~~lekeL~~Le~~~~~~~~~ 370 (569)
T PRK04778 335 RVKQSY-T--LNESE----LESVRQLEKQLESLEKQYDEITER 370 (569)
T ss_pred HHHHcc-c--cCchh----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 887540 0 01122 233455555555555555544433
No 139
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=91.23 E-value=16 Score=36.52 Aligned_cols=27 Identities=15% Similarity=0.254 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045262 217 GRLLNLKIESLQADNRRLEAQVADHAK 243 (594)
Q Consensus 217 i~~L~~kI~sLE~En~RLq~qv~e~~~ 243 (594)
+-.+...|..+.+++..|+.++.+...
T Consensus 22 L~~~~~~l~~~~~~~~~l~~~i~~~l~ 48 (302)
T PF10186_consen 22 LLELRSELQQLKEENEELRRRIEEILE 48 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666666666666666666554
No 140
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=91.22 E-value=15 Score=40.25 Aligned_cols=14 Identities=14% Similarity=0.102 Sum_probs=5.7
Q ss_pred hhHH-HHHHHHHHHH
Q 045262 14 VKFG-VAFVFSLAGI 27 (594)
Q Consensus 14 vr~G-~ava~S~A~~ 27 (594)
.|+. .++++.|+||
T Consensus 20 ~~~~~~~~~~~~~~~ 34 (457)
T TIGR01000 20 STLVIVPIFLLLVFL 34 (457)
T ss_pred chhHHHHHHHHHHHH
Confidence 3444 2344444443
No 141
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=90.98 E-value=13 Score=34.44 Aligned_cols=69 Identities=23% Similarity=0.267 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcc--hhhhHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 045262 304 LKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISV--LEDGEREALNEMSQRLREENTSLSKEVEKL 372 (594)
Q Consensus 304 lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~--~E~~ev~~i~ee~~~LR~~NedL~kQVEqL 372 (594)
|..|..++.+++.....|+.+.......|+.++..-... .-..++..+....+-|..-|.=|-.|||-|
T Consensus 61 L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 61 LQQLREELQELQQEINELKAEAESAKAELEESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 444555555555555555555555555555555433211 011334455666677777788888887754
No 142
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=90.84 E-value=26 Score=37.65 Aligned_cols=32 Identities=3% Similarity=0.021 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhhhcchh
Q 045262 349 EALNEMSQRLREENTSLSKEVEKLHADKCAGV 380 (594)
Q Consensus 349 ~~i~ee~~~LR~~NedL~kQVEqLq~dRfseV 380 (594)
..+..+.+..+.-|+.|...+++.+-......
T Consensus 345 ~~L~r~~~~~~~~y~~ll~r~~e~~l~~~~~~ 376 (444)
T TIGR03017 345 SVLQRDVENAQRAYDAAMQRYTQTRIEAQSNQ 376 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 34666778888889999999999887765543
No 143
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=90.81 E-value=34 Score=38.84 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhHhHHhhhh
Q 045262 304 LKVLEAEAEDLRKSNMKLQLENSQLARRLES 334 (594)
Q Consensus 304 lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~s 334 (594)
-..|..++..|...|.++..|-..|+.=|-.
T Consensus 167 ~~~L~~qi~~L~~~n~~i~~ea~nLt~ALkg 197 (475)
T PRK10361 167 RHTLAHEIRNLQQLNAQMAQEAINLTRALKG 197 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3678889999999999999998888776643
No 144
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=90.81 E-value=49 Score=40.77 Aligned_cols=149 Identities=23% Similarity=0.351 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHH----HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 166 EQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIV----MELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADH 241 (594)
Q Consensus 166 e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v----~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~ 241 (594)
..+|...++-+..+.+-=..|+..=..|..|+.|-... .-+++++ .+.+--.+-..+..+.++...++.++.+.
T Consensus 683 ~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~--~~~e~~~~~~~~~~~~e~v~e~~~~Ike~ 760 (1174)
T KOG0933|consen 683 QKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRL--EQNEFHKLLDDLKELLEEVEESEQQIKEK 760 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcChHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555666666677776665432 2223332 22333445555555556666666666655
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHH
Q 045262 242 AKTVSELEAAKTKIKLLKKKLRTEAEQNRE-QILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMK 320 (594)
Q Consensus 242 ~~v~~ELE~ar~kir~LqkKl~~~a~q~K~-qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~Nke 320 (594)
..+.++-+ .++..|.+.++. +..+++ .+--|... |+.....+.....+++++.+....|..|+++|.+...-
T Consensus 761 ~~~~k~~~---~~i~~lE~~~~d-~~~~re~rlkdl~ke---ik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~ 833 (1174)
T KOG0933|consen 761 ERALKKCE---DKISTLEKKMKD-AKANRERRLKDLEKE---IKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISS 833 (1174)
T ss_pred HHHHHHHH---HHHHHHHHHHhH-hhhhhHhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554433 233333333321 111111 11111111 11111111122345666666666666666666655444
Q ss_pred HHH
Q 045262 321 LQL 323 (594)
Q Consensus 321 LQ~ 323 (594)
++.
T Consensus 834 ~k~ 836 (1174)
T KOG0933|consen 834 LKQ 836 (1174)
T ss_pred HHH
Confidence 333
No 145
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=90.45 E-value=22 Score=36.18 Aligned_cols=165 Identities=17% Similarity=0.137 Sum_probs=90.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhc
Q 045262 213 NNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAA 292 (594)
Q Consensus 213 k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~ 292 (594)
|+.||-.|.-.+.-.++|. -....++..++.+|-.++++++....++..........-.-|..--..|+ .
T Consensus 8 k~GEIsLLKqQLke~q~E~---~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELq-------r 77 (202)
T PF06818_consen 8 KSGEISLLKQQLKESQAEV---NQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQ-------R 77 (202)
T ss_pred hhhhHHHHHHHHHHHHHHH---HHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHH-------H
Confidence 4455555555444444442 12233444555555555555555555555433333222222222111222 2
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHh--hhhhhhhh-h----cchhhhHHHHHHHHHHHHHHhhHHH
Q 045262 293 IDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARR--LESTQMLE-I----SVLEDGEREALNEMSQRLREENTSL 365 (594)
Q Consensus 293 ~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~K--L~sAe~~~-~----~~~E~~ev~~i~ee~~~LR~~NedL 365 (594)
...+++.--..+..||.|+.+||.....+...+.+...- .+.|.+.- + ...-..+|+.++++....|..+++-
T Consensus 78 ~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~~e~q 157 (202)
T PF06818_consen 78 KKNEAELLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQRREEQ 157 (202)
T ss_pred HhCHHHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHhHHHH
Confidence 223344444568889999999998888874333333321 12222211 1 1113356788899999999999999
Q ss_pred HHHHHHHhhhhcchhhHHH-HHH
Q 045262 366 SKEVEKLHADKCAGVEELV-YLK 387 (594)
Q Consensus 366 ~kQVEqLq~dRfseVEELV-YLR 387 (594)
....|+=+.-|..+-|=+| |.+
T Consensus 158 ~~~Fe~ER~~W~eEKekVi~YQk 180 (202)
T PF06818_consen 158 RSSFEQERRTWQEEKEKVIRYQK 180 (202)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888888877643 555
No 146
>PLN02939 transferase, transferring glycosyl groups
Probab=90.06 E-value=24 Score=43.18 Aligned_cols=156 Identities=21% Similarity=0.277 Sum_probs=99.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhh-----------HHHHHHHHHHHHhhh--------hhhHHHHHHHH
Q 045262 165 CEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQ-----------ETIVMELQNRLKLNN--------MEGRLLNLKIE 225 (594)
Q Consensus 165 ~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQ-----------Ea~v~ELe~~L~~k~--------~Ei~~L~~kI~ 225 (594)
...|+.-||.-=-.|++--.-|..+|.+.....|- ++.+.+||..+.+.. .+++.+-.+++
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (977)
T PLN02939 224 LSKELDVLKEENMLLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVE 303 (977)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHH
Confidence 45677777776666777667777777666554443 345677777665433 34466777777
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-H-HHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHH
Q 045262 226 SLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTE-A-EQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQR 303 (594)
Q Consensus 226 sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~-a-~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~ 303 (594)
.||.=..+...|+.....+..+-...+.|+..|..-+..- . +-.-..+..++|+|..++.. ..+.|+|+..-.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-- 378 (977)
T PLN02939 304 NLQDLLDRATNQVEKAALVLDQNQDLRDKVDKLEASLKEANVSKFSSYKVELLQQKLKLLEER---LQASDHEIHSYI-- 378 (977)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHH---HHhhHHHHHHHH--
Confidence 7877777777777777777666666666666555444311 1 11123456777888777654 235566666553
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhh
Q 045262 304 LKVLEAEAEDLRKSNMKLQLENS 326 (594)
Q Consensus 304 lkeLE~Ev~ELRr~NkeLQ~EKr 326 (594)
+--..++.|++.+.+.|-.|..
T Consensus 379 -~~~~~~~~~~~~~~~~~~~~~~ 400 (977)
T PLN02939 379 -QLYQESIKEFQDTLSKLKEESK 400 (977)
T ss_pred -HHHHHHHHHHHHHHHHHHhhhh
Confidence 4467888999999888877653
No 147
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=90.06 E-value=36 Score=38.91 Aligned_cols=56 Identities=21% Similarity=0.329 Sum_probs=44.5
Q ss_pred HHHHHHHhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 045262 205 ELQNRLKLN-NMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKK 260 (594)
Q Consensus 205 ELe~~L~~k-~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~Lqk 260 (594)
.+|.+|++- +..+--+...|+.|.++|.+|.+++.+..++-.-++..+.|-|+|+.
T Consensus 253 ~~e~Elk~~f~~~~~~i~~~i~~lk~~n~~l~e~i~ea~k~s~~i~~l~ek~r~l~~ 309 (622)
T COG5185 253 PSEQELKLGFEKFVHIINTDIANLKTQNDNLYEKIQEAMKISQKIKTLREKWRALKS 309 (622)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555533 23345588899999999999999999999999999988888888884
No 148
>PRK12704 phosphodiesterase; Provisional
Probab=89.75 E-value=41 Score=38.24 Aligned_cols=17 Identities=35% Similarity=0.268 Sum_probs=9.2
Q ss_pred CCcccchhhhhhcccccc
Q 045262 563 NSDLVSSDAYKRFSLSRE 580 (594)
Q Consensus 563 ~~~~g~~~~~k~~~~~~~ 580 (594)
++..|+.++|- +-.|||
T Consensus 453 ~~~~gv~~~ya-iqaGre 469 (520)
T PRK12704 453 NSFEGVEKAYA-IQAGRE 469 (520)
T ss_pred HhCCcHHHHHH-HhcCce
Confidence 34557777775 334443
No 149
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=89.69 E-value=33 Score=36.97 Aligned_cols=80 Identities=16% Similarity=0.235 Sum_probs=55.2
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hchhhHHH-HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 045262 163 DDCEQEVKNLKNMVQMLQDREKNLEVELLEYY----GLKEQETI-VMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQ 237 (594)
Q Consensus 163 ~d~e~EI~~LR~lVeeLqERE~~LE~ELLEyy----~LKEQEa~-v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~q 237 (594)
...---++.|++.++.|++--..|..+.-... ...|+|.. |.+-=++|...+++|..|...++.--+++.+.+++
T Consensus 156 ~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEE 235 (306)
T PF04849_consen 156 SQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEE 235 (306)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 33445689999999999988777777665544 44444443 33344677777888888888777777777777776
Q ss_pred HHHHH
Q 045262 238 VADHA 242 (594)
Q Consensus 238 v~e~~ 242 (594)
|..+.
T Consensus 236 It~Ll 240 (306)
T PF04849_consen 236 ITSLL 240 (306)
T ss_pred HHHHH
Confidence 66554
No 150
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=89.42 E-value=25 Score=42.06 Aligned_cols=150 Identities=23% Similarity=0.299 Sum_probs=73.2
Q ss_pred hHHHHHHHHHHH----HHHHHHHHHHHHH-----HHHhhhchhhHHHHHHHHHHHHhhhhhh-------HHHHHHHHHHH
Q 045262 165 CEQEVKNLKNMV----QMLQDREKNLEVE-----LLEYYGLKEQETIVMELQNRLKLNNMEG-------RLLNLKIESLQ 228 (594)
Q Consensus 165 ~e~EI~~LR~lV----eeLqERE~~LE~E-----LLEyy~LKEQEa~v~ELe~~L~~k~~Ei-------~~L~~kI~sLE 228 (594)
+..|...||+.+ +.|+|+|..-+.- -+|...|+ +.-+-|+++|..-.... +.|-+.|+++.
T Consensus 392 lrsENaqLrRrLrilnqqlreqe~~~k~~~~~~~n~El~sLq---SlN~~Lq~ql~es~k~~e~lq~kneellk~~e~q~ 468 (861)
T PF15254_consen 392 LRSENAQLRRRLRILNQQLREQEKAEKTSGSQDCNLELFSLQ---SLNMSLQNQLQESLKSQELLQSKNEELLKVIENQK 468 (861)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhhcccCCCcccchhhHHHH---HHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHH
Confidence 345666666555 4566666654111 12222221 22445555555433333 34557788888
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHH
Q 045262 229 ADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLE 308 (594)
Q Consensus 229 ~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE 308 (594)
.||+||...+.+-..-..+ -|.....=--+|+.+.+++..+.-.+|=++..-+.+ ..+ =.-.|+-=+
T Consensus 469 ~Enk~~~~~~~ekd~~l~~---~kq~~d~e~~rik~ev~eal~~~k~~q~kLe~sekE-N~i---------L~itlrQrD 535 (861)
T PF15254_consen 469 EENKRLRKMFQEKDQELLE---NKQQFDIETTRIKIEVEEALVNVKSLQFKLEASEKE-NQI---------LGITLRQRD 535 (861)
T ss_pred HHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhh-hhH---------hhhHHHHHH
Confidence 8898888776554322111 111111111233333444433333333222221111 111 112245557
Q ss_pred HHHHHHHHHhHHHHHHhhHhHH
Q 045262 309 AEAEDLRKSNMKLQLENSQLAR 330 (594)
Q Consensus 309 ~Ev~ELRr~NkeLQ~EKreL~~ 330 (594)
.||.-||-.+..||.-...|..
T Consensus 536 aEi~RL~eLtR~LQ~Sma~lL~ 557 (861)
T PF15254_consen 536 AEIERLRELTRTLQNSMAKLLS 557 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 8888899999999988777755
No 151
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=89.38 E-value=1.1 Score=39.46 Aligned_cols=74 Identities=23% Similarity=0.292 Sum_probs=56.5
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhh------------hhhhHHHHHHHHHHHH
Q 045262 162 KDDCEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLN------------NMEGRLLNLKIESLQA 229 (594)
Q Consensus 162 ~~d~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k------------~~Ei~~L~~kI~sLE~ 229 (594)
......||..|+..+..|+..-..|.++=|+-+.+ ..+..||.+|... ..+|+.|..++..|+.
T Consensus 14 ~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~----~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~ 89 (100)
T PF01486_consen 14 HEELQQEIAKLRKENESLQKELRHLMGEDLESLSL----KELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEE 89 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccccccch----HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456799999999999999999999998888887 5577777777633 3466677777777777
Q ss_pred HHHHHHHHHH
Q 045262 230 DNRRLEAQVA 239 (594)
Q Consensus 230 En~RLq~qv~ 239 (594)
+|..|+.+++
T Consensus 90 en~~L~~~~~ 99 (100)
T PF01486_consen 90 ENNQLRQKIE 99 (100)
T ss_pred HHHHHHHHhc
Confidence 7777776664
No 152
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=89.37 E-value=56 Score=39.19 Aligned_cols=161 Identities=18% Similarity=0.268 Sum_probs=86.1
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHHH
Q 045262 211 KLNNMEGRLLNLKIESLQADNRRLEAQVADH----AKTVSELEAAKTKIKLLKKKLRTEAEQNREQI-LAVQERVTKLQE 285 (594)
Q Consensus 211 ~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~----~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi-~~Lkq~v~~Lq~ 285 (594)
.........+..+++.|+++...|...+..+ -....+|..+..++..|+.++.. ++.++..+ ..|+.+....+.
T Consensus 585 ea~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~-~keS~s~~E~ql~~~~e~~e~ 663 (769)
T PF05911_consen 585 EADTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELES-AKESNSLAETQLKAMKESYES 663 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677778888888887777655443 23333555555555666655552 22222211 122222222221
Q ss_pred HHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhc----------chhhhHHHHHHHHH
Q 045262 286 QAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEIS----------VLEDGEREALNEMS 355 (594)
Q Consensus 286 ~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~----------~~E~~ev~~i~ee~ 355 (594)
-+.....-..|+..-...+..||.|+..=|....++--.-++|-.+|+........ ..+.++.+++..-+
T Consensus 664 le~~~~~~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~~~~~~~~~~~~~k~kqe~EiaaAA~KLA 743 (769)
T PF05911_consen 664 LETRLKDLEAEAEELQSKISSLEEELEKERALSEELEAKCRELEEELERMKKEESLQQLANEDKKIKQEKEIAAAAEKLA 743 (769)
T ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhcccchhhccccccccchHHHHHHHHHHHH
Confidence 11111111245555566778888888888888887777777777777776543211 12333443332222
Q ss_pred HHHHHhhHHHHHHHHHHh
Q 045262 356 QRLREENTSLSKEVEKLH 373 (594)
Q Consensus 356 ~~LR~~NedL~kQVEqLq 373 (594)
. =.++---|-||+-.|.
T Consensus 744 E-CQeTI~sLGkQLksLa 760 (769)
T PF05911_consen 744 E-CQETIASLGKQLKSLA 760 (769)
T ss_pred H-HHHHHHHHHHHHHhcC
Confidence 2 2355667777776665
No 153
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=89.25 E-value=4.7 Score=39.51 Aligned_cols=19 Identities=37% Similarity=0.431 Sum_probs=12.6
Q ss_pred HHHHhHHHHHHhhHhHHhh
Q 045262 314 LRKSNMKLQLENSQLARRL 332 (594)
Q Consensus 314 LRr~NkeLQ~EKreL~~KL 332 (594)
+...+..|+.||.+|+.|+
T Consensus 163 ~e~k~~~l~~En~~Lv~Rw 181 (194)
T PF08614_consen 163 LEEKLRKLEEENRELVERW 181 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4445566777888887664
No 154
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=89.18 E-value=6 Score=41.96 Aligned_cols=29 Identities=21% Similarity=0.274 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 045262 221 NLKIESLQADNRRLEAQVADHAKTVSELE 249 (594)
Q Consensus 221 ~~kI~sLE~En~RLq~qv~e~~~v~~ELE 249 (594)
..-++.|+.+...++.+...|....+++.
T Consensus 8 ~~l~~~l~~~~~~~~~E~~~Y~~fL~~l~ 36 (314)
T PF04111_consen 8 DLLLEQLDKQLEQAEKERDTYQEFLKKLE 36 (314)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444544444443
No 155
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=89.16 E-value=26 Score=35.11 Aligned_cols=27 Identities=19% Similarity=0.340 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045262 168 EVKNLKNMVQMLQDREKNLEVELLEYY 194 (594)
Q Consensus 168 EI~~LR~lVeeLqERE~~LE~ELLEyy 194 (594)
-|..++..+..++..-..|..++-+..
T Consensus 21 ~L~~~~~~l~~~~~~~~~l~~~i~~~l 47 (302)
T PF10186_consen 21 RLLELRSELQQLKEENEELRRRIEEIL 47 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666666666666666666555543
No 156
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=89.15 E-value=45 Score=37.80 Aligned_cols=80 Identities=15% Similarity=0.145 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchh-hhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhcchhhH
Q 045262 304 LKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLE-DGEREALNEMSQRLREENTSLSKEVEKLHADKCAGVEE 382 (594)
Q Consensus 304 lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E-~~ev~~i~ee~~~LR~~NedL~kQVEqLq~dRfseVEE 382 (594)
+.+++..+..+++.....-....++...++..+.......+ ...++.+.++...++....+++.++=+.+..-+...++
T Consensus 303 L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~l~~ 382 (563)
T TIGR00634 303 LNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEALEEEVDKLEEELDKAAVALSLIRRKAAERLAK 382 (563)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555544444334445555555555554443222 23456777888888888888888887777766655544
Q ss_pred H
Q 045262 383 L 383 (594)
Q Consensus 383 L 383 (594)
.
T Consensus 383 ~ 383 (563)
T TIGR00634 383 R 383 (563)
T ss_pred H
Confidence 3
No 157
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.08 E-value=51 Score=38.40 Aligned_cols=173 Identities=23% Similarity=0.304 Sum_probs=104.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045262 164 DCEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAK 243 (594)
Q Consensus 164 d~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~ 243 (594)
+.+.+=.+||.-+++++.||.|| |-+|-.|.|--..+...=.-|.-..+|.+-|+-.|..|++|..=|-.|+.+...
T Consensus 146 ~~E~qR~rlr~elKe~KfRE~Rl---lseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~~~ 222 (772)
T KOG0999|consen 146 AVEDQRRRLRDELKEYKFREARL---LSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAIR 222 (772)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667788999999999999998 567777766555555555566677889999999999999998888888777665
Q ss_pred HHH----HHHHHHHHH---HHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH-HHHHhhc--CChh------------HHH
Q 045262 244 TVS----ELEAAKTKI---KLLKKKLRTEAEQN--REQILAVQERVTKLQE-QAHKAAA--IDPD------------TQS 299 (594)
Q Consensus 244 v~~----ELE~ar~ki---r~LqkKl~~~a~q~--K~qi~~Lkq~v~~Lq~-~E~e~~~--~d~E------------~ek 299 (594)
+++ +||.|=.-+ |+-+.-++++..|. .+.|-.+-...-+|.. ..++++. +|++ +-+
T Consensus 223 Lk~IAekQlEEALeTlq~EReqk~alkkEL~q~~n~e~~~~~n~l~~sldgk~~eDga~pn~d~e~eh~~l~kl~~Dl~t 302 (772)
T KOG0999|consen 223 LKEIAEKQLEEALETLQQEREQKNALKKELSQYRNAEDISSLNHLLFSLDGKFGEDGAEPNNDPEEEHGALKKLASDLFT 302 (772)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcchhhhhhhhhhheecccccccccCCCCCChhhhcchhhhccchhhh
Confidence 543 554442211 11222233333332 2233333333333332 1112221 2222 001
Q ss_pred HHH------HHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhh
Q 045262 300 RLQ------RLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLE 339 (594)
Q Consensus 300 Klq------~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~ 339 (594)
-++ -......|+.-|+...+..+-+|-+|+--|..++.+.
T Consensus 303 el~~p~sDl~sel~iseiqkLkqqL~smErek~~l~anL~dtqt~l 348 (772)
T KOG0999|consen 303 ELQGPVSDLFSELNISEIQKLKQQLMSMEREKAELLANLQDTQTQL 348 (772)
T ss_pred hccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhh
Confidence 111 1233456777777788888888888888888887655
No 158
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=88.97 E-value=50 Score=38.08 Aligned_cols=28 Identities=14% Similarity=0.251 Sum_probs=19.9
Q ss_pred HHHHHHHHHHhHHHHHHhhHhHHhhhhh
Q 045262 308 EAEAEDLRKSNMKLQLENSQLARRLEST 335 (594)
Q Consensus 308 E~Ev~ELRr~NkeLQ~EKreL~~KL~sA 335 (594)
-..+.+++.....++.|..++..+|..+
T Consensus 390 ~~~~~~~~~~~~~~e~el~~l~~~l~~~ 417 (650)
T TIGR03185 390 QDAKSQLLKELRELEEELAEVDKKISTI 417 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3456677777777777777777777665
No 159
>KOG4001 consensus Axonemal dynein light chain [Cytoskeleton]
Probab=88.79 E-value=1.6 Score=44.66 Aligned_cols=65 Identities=25% Similarity=0.315 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 045262 307 LEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKL 372 (594)
Q Consensus 307 LE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQVEqL 372 (594)
++.++..|.-.+++|.....++..|+++++.......+ .+..++.+++..|+.+|..|..|+|+.
T Consensus 190 ~~~~~k~le~~k~~Le~~ia~~k~K~e~~e~r~~E~r~-ieEkk~~eei~fLk~tN~qLKaQLegI 254 (259)
T KOG4001|consen 190 ATTEWKVLEDKKKELELKIAQLKKKLETDEIRSEEERE-IEEKKMKEEIEFLKETNRQLKAQLEGI 254 (259)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 56667777777888888888889999999987653222 233678999999999999999999985
No 160
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=88.78 E-value=31 Score=35.46 Aligned_cols=72 Identities=21% Similarity=0.207 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhch-hhHH-HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 170 KNLKNMVQMLQDREKNLEVELLEYYGLK-EQET-IVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADH 241 (594)
Q Consensus 170 ~~LR~lVeeLqERE~~LE~ELLEyy~LK-EQEa-~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~ 241 (594)
..--..|+.|+..=..|+.++-.+.+=+ .+.+ .-.-.+.+|..-...|+.+......|+.+...|..++.++
T Consensus 14 a~YIekVr~LE~~N~~Le~~i~~~~~~~~~~~~~~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~ 87 (312)
T PF00038_consen 14 ASYIEKVRFLEQENKRLESEIEELREKKGEEVSRIKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDL 87 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHhcccccCcccccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHH
Confidence 3344678889999999999999888873 2222 2333444444444445555555555555544444444443
No 161
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=88.71 E-value=19 Score=36.92 Aligned_cols=71 Identities=28% Similarity=0.307 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhcchhhHH
Q 045262 304 LKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHADKCAGVEEL 383 (594)
Q Consensus 304 lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQVEqLq~dRfseVEEL 383 (594)
..+++.+...|+......+.++..|..++..++..+.. +.++....-.+.+.|..+++..|.+.-.-.++|
T Consensus 56 ~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~~~i~~---------l~ee~~~ke~Ea~~lq~el~~ar~~~~~ak~~L 126 (246)
T PF00769_consen 56 RQEAEEEKQRLEEEAEMQEEEKEQLEQELREAEAEIAR---------LEEESERKEEEAEELQEELEEAREDEEEAKEEL 126 (246)
T ss_dssp HHHHHHHHHHHHH------------HHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678888888888888888888888887777766542 222333333344555555555555444444444
No 162
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=88.57 E-value=40 Score=38.33 Aligned_cols=16 Identities=25% Similarity=0.179 Sum_probs=8.2
Q ss_pred Ccccchhhhhhcccccc
Q 045262 564 SDLVSSDAYKRFSLSRE 580 (594)
Q Consensus 564 ~~~g~~~~~k~~~~~~~ 580 (594)
+--|+.++|- +-.|||
T Consensus 448 ~~~gv~~~~a-iqaGre 463 (514)
T TIGR03319 448 SFEGVEKSYA-IQAGRE 463 (514)
T ss_pred hCCCchhhhh-hhcCcE
Confidence 3446766664 234443
No 163
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=88.52 E-value=31 Score=39.03 Aligned_cols=96 Identities=16% Similarity=0.215 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHH-------HhhcCChhHHHHHHHHHHHHHHHHH
Q 045262 244 TVSELEAAKTKIKLLKKKLRTEAEQ---NREQILAVQERVTKLQEQAH-------KAAAIDPDTQSRLQRLKVLEAEAED 313 (594)
Q Consensus 244 v~~ELE~ar~kir~LqkKl~~~a~q---~K~qi~~Lkq~v~~Lq~~E~-------e~~~~d~E~ekKlq~lkeLE~Ev~E 313 (594)
+...|+.+...+.++...++..... .-+.+..+..++..++.-.. +....-.++++++..+...+.++.+
T Consensus 271 ~~~~l~~~~~~l~d~~~~l~~~~~~l~~dp~~L~ele~RL~~l~~LkrKyg~s~e~l~~~~~~l~~eL~~l~~~~~~le~ 350 (563)
T TIGR00634 271 LAEQVGNALTEVEEATRELQNYLDELEFDPERLNEIEERLAQIKRLKRKYGASVEEVLEYAEKIKEELDQLDDSDESLEA 350 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 3334444444555555444443322 23455666666666655321 1122234455556666666666666
Q ss_pred HHHHhHHHHHHhhHhHHhhhhhhhhh
Q 045262 314 LRKSNMKLQLENSQLARRLESTQMLE 339 (594)
Q Consensus 314 LRr~NkeLQ~EKreL~~KL~sAe~~~ 339 (594)
|+....+++.+-.+++.+|..+...+
T Consensus 351 L~~el~~l~~~l~~~a~~Ls~~R~~~ 376 (563)
T TIGR00634 351 LEEEVDKLEEELDKAAVALSLIRRKA 376 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666666666666655554444
No 164
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=88.48 E-value=80 Score=39.89 Aligned_cols=30 Identities=17% Similarity=0.297 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 045262 167 QEVKNLKNMVQMLQDREKNLEVELLEYYGL 196 (594)
Q Consensus 167 ~EI~~LR~lVeeLqERE~~LE~ELLEyy~L 196 (594)
..++.++..++.|+++-..|+.=+-.|...
T Consensus 230 ~~~~~~~~~le~l~~~~~~l~~i~~~y~~y 259 (1353)
T TIGR02680 230 EQLDEYRDELERLEALERALRNFLQRYRRY 259 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446667777777777777666555555444
No 165
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=88.36 E-value=24 Score=33.80 Aligned_cols=41 Identities=22% Similarity=0.287 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 202 IVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHA 242 (594)
Q Consensus 202 ~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~ 242 (594)
.+.+++++|..-..|++.+...+..++.+...++.......
T Consensus 82 e~~~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~ 122 (191)
T PF04156_consen 82 ELSELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELR 122 (191)
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 34455555555555666666666666666555554444444
No 166
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=88.17 E-value=17 Score=39.58 Aligned_cols=147 Identities=18% Similarity=0.202 Sum_probs=91.6
Q ss_pred CchHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-HHHHHHHH
Q 045262 163 DDCEQEVKNLKNMVQ---MLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQAD-NRRLEAQV 238 (594)
Q Consensus 163 ~d~e~EI~~LR~lVe---eLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~E-n~RLq~qv 238 (594)
++-..|++++--.++ .--.+.+|...+-+.-+. +.=+..+++...+|..-..+|..--.+|.+-|.- |..|+..+
T Consensus 194 ~eWklEvERV~PqLKv~~~~d~kDWR~hleqm~~~~-~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~ 272 (359)
T PF10498_consen 194 AEWKLEVERVLPQLKVTIRADAKDWRSHLEQMKQHK-KSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLI 272 (359)
T ss_pred HHHHHHHHHHhhhheeeccCCcchHHHHHHHHHHHH-HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 334556666544332 122356666555544332 1223446777777777777787777788877766 77899999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHH
Q 045262 239 ADHAKTVSELEAAKTKIKLLKKKLRTEAEQN---REQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDL 314 (594)
Q Consensus 239 ~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~---K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~EL 314 (594)
.+|..+..+|..++.+.+.+..-+....+.- .+++..+|+++ +.++.......+=+..| +++..|..|+.+|
T Consensus 273 ~eYr~~~~~ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~em---eerg~~mtD~sPlv~IK-qAl~kLk~EI~qM 347 (359)
T PF10498_consen 273 QEYRSAQDELSEVQEKYKQASEGVSERTRELAEISEELEQVKQEM---EERGSSMTDGSPLVKIK-QALTKLKQEIKQM 347 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH---HHhcCCCCCCCHHHHHH-HHHHHHHHHHHHh
Confidence 9999999999999999999987776555433 34444444443 33433333333333333 5666676666655
No 167
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=88.13 E-value=10 Score=40.26 Aligned_cols=35 Identities=11% Similarity=0.162 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhh
Q 045262 303 RLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQM 337 (594)
Q Consensus 303 ~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~ 337 (594)
....+..+..++......|..+......+|+..+.
T Consensus 100 ~~n~~~~~l~~~~~e~~sl~~q~~~~~~~L~~L~k 134 (314)
T PF04111_consen 100 EYNELQLELIEFQEERDSLKNQYEYASNQLDRLRK 134 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555555555555555555555555554443
No 168
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=87.88 E-value=82 Score=39.30 Aligned_cols=52 Identities=12% Similarity=0.087 Sum_probs=24.1
Q ss_pred HHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 045262 320 KLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLH 373 (594)
Q Consensus 320 eLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQVEqLq 373 (594)
++...|++|+.+|...-...+..... -..++...+.++++...+-.|++=|+
T Consensus 262 ~~~~~N~~Ls~~L~~~t~~~n~l~~~--~~~~~~~l~~~~q~~~~i~eQi~~l~ 313 (1109)
T PRK10929 262 AQFKINRELSQALNQQAQRMDLIASQ--QRQAASQTLQVRQALNTLREQSQWLG 313 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33345677777666665555432211 11223334445555444444444333
No 169
>PRK10884 SH3 domain-containing protein; Provisional
Probab=87.73 E-value=6.1 Score=39.83 Aligned_cols=21 Identities=14% Similarity=0.385 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 045262 220 LNLKIESLQADNRRLEAQVAD 240 (594)
Q Consensus 220 L~~kI~sLE~En~RLq~qv~e 240 (594)
+...+..||.|.+.|++++++
T Consensus 91 ~~~rlp~le~el~~l~~~l~~ 111 (206)
T PRK10884 91 LRTRVPDLENQVKTLTDKLNN 111 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555544444
No 170
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=87.70 E-value=61 Score=37.64 Aligned_cols=91 Identities=16% Similarity=0.039 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhh---------hHHHHHHHHHHHHHHhhHHHHHHHH
Q 045262 300 RLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLED---------GEREALNEMSQRLREENTSLSKEVE 370 (594)
Q Consensus 300 Klq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~---------~ev~~i~ee~~~LR~~NedL~kQVE 370 (594)
+....--|+.-+-++--...+++...+.+-.+|..|+....-..+. .+.+.+.++...+...-..-.++.+
T Consensus 437 ~~~~~~tLq~~~~~~~~~i~E~~~~l~~~~~el~~~~~~~~~~k~e~eee~~k~~~E~e~le~~l~~l~l~~~~~m~~a~ 516 (581)
T KOG0995|consen 437 AENELETLQEHFSNKASTIEEKIQILGEIELELKKAESKYELKKEEAEEEWKKCRKEIEKLEEELLNLKLVLNTSMKEAE 516 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555666666666667777777777777777655422111 1122222333222222222222222
Q ss_pred HHhhhhcchhhHHHHHHHHHHHHHH
Q 045262 371 KLHADKCAGVEELVYLKWINACLRY 395 (594)
Q Consensus 371 qLq~dRfseVEELVYLRWVNACLR~ 395 (594)
++ -.-=|+.|-|-+++|=+|
T Consensus 517 ~~-----v~s~e~el~~~~~~~~ee 536 (581)
T KOG0995|consen 517 EL-----VKSIELELDRMVATGEEE 536 (581)
T ss_pred HH-----HHHHHHHHHHHHHHHHHH
Confidence 22 223478899999999765
No 171
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=87.57 E-value=41 Score=35.45 Aligned_cols=135 Identities=20% Similarity=0.250 Sum_probs=74.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHH------HhHH-HHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHH
Q 045262 239 ADHAKTVSELEAAKTKIKLLKKKLRTEAE------QNRE-QILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEA 311 (594)
Q Consensus 239 ~e~~~v~~ELE~ar~kir~LqkKl~~~a~------q~K~-qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev 311 (594)
.....+..|++...++|...++.+....- ..|. ||..|..++..+........ .++...++
T Consensus 81 ~~l~~Lq~ql~~l~akI~k~~~el~~L~TYkD~EYPvK~vqIa~L~rqlq~lk~~qqdEl---del~e~~~--------- 148 (258)
T PF15397_consen 81 SKLSKLQQQLEQLDAKIQKTQEELNFLSTYKDHEYPVKAVQIANLVRQLQQLKDSQQDEL---DELNEMRQ--------- 148 (258)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH---------
Confidence 34455566677777777777777765542 1244 78888888877776543211 11111111
Q ss_pred HHHHHHhHHHHHHhhHhHHhhhhhhhhh--hcc----hhh----hHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhcchhh
Q 045262 312 EDLRKSNMKLQLENSQLARRLESTQMLE--ISV----LED----GEREALNEMSQRLREENTSLSKEVEKLHADKCAGVE 381 (594)
Q Consensus 312 ~ELRr~NkeLQ~EKreL~~KL~sAe~~~--~~~----~E~----~ev~~i~ee~~~LR~~NedL~kQVEqLq~dRfseVE 381 (594)
.+|-..-...|..++++...+...-..+ .++ .++ .+...-+++++.|.+....|-.+|++|+.++. +|-
T Consensus 149 ~el~~l~~~~q~k~~~il~~~~~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~-~~R 227 (258)
T PF15397_consen 149 MELASLSRKIQEKKEEILSSAAEKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQ-DPR 227 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-chH
Confidence 1222223344555555433322111110 000 122 11233467778888888888889999999988 888
Q ss_pred HHHHH
Q 045262 382 ELVYL 386 (594)
Q Consensus 382 ELVYL 386 (594)
|.||-
T Consensus 228 e~iF~ 232 (258)
T PF15397_consen 228 EVIFA 232 (258)
T ss_pred HHhhH
Confidence 88874
No 172
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=87.48 E-value=20 Score=44.62 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=10.5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHH
Q 045262 260 KKLRTEAEQNREQILAVQERVTKLQ 284 (594)
Q Consensus 260 kKl~~~a~q~K~qi~~Lkq~v~~Lq 284 (594)
+.+.+.+.-++++.+..+|.+..||
T Consensus 1643 ~~a~~~a~sa~~~A~~a~q~~~~lq 1667 (1758)
T KOG0994|consen 1643 KQAEKTAGSAKEQALSAEQGLEILQ 1667 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444333
No 173
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=87.43 E-value=35 Score=34.59 Aligned_cols=24 Identities=29% Similarity=0.261 Sum_probs=12.4
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHH
Q 045262 238 VADHAKTVSELEAAKTKIKLLKKK 261 (594)
Q Consensus 238 v~e~~~v~~ELE~ar~kir~LqkK 261 (594)
+-.+-.+.+||+-+|.-++.|+-+
T Consensus 59 l~~aK~l~eEledLk~~~~~lEE~ 82 (193)
T PF14662_consen 59 LQKAKALEEELEDLKTLAKSLEEE 82 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455566666555555533
No 174
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=87.36 E-value=9.1 Score=41.41 Aligned_cols=61 Identities=20% Similarity=0.249 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 045262 220 LNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQ 286 (594)
Q Consensus 220 L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~ 286 (594)
|...-..|+.+..++.+|+.++...+.++| ..|-+|+-...+.=|++|+.|++.+..++..
T Consensus 149 L~~enerL~~e~~~~~~qlE~~v~~K~~~E------~~L~~KF~~vLNeKK~KIR~lq~~L~~~~~~ 209 (342)
T PF06632_consen 149 LQKENERLESEANKLLKQLEKFVNAKEEHE------EDLYAKFVLVLNEKKAKIRELQRLLASAKEE 209 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhHHHHHHHHHHHHHHhhcc
Confidence 344444556666666666666666666666 5688888888888899999998888887754
No 175
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=87.17 E-value=42 Score=35.18 Aligned_cols=26 Identities=15% Similarity=0.245 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045262 168 EVKNLKNMVQMLQDREKNLEVELLEY 193 (594)
Q Consensus 168 EI~~LR~lVeeLqERE~~LE~ELLEy 193 (594)
+-..+..-+..|+.+=.+|+.++..+
T Consensus 75 d~~~~~~~l~~l~~~~~~l~a~~~~l 100 (423)
T TIGR01843 75 DATDVEADAAELESQVLRLEAEVARL 100 (423)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 33456667777777777777777544
No 176
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=87.13 E-value=19 Score=41.29 Aligned_cols=102 Identities=21% Similarity=0.214 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--hhhHHHH----HH--HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 045262 167 QEVKNLKNMVQMLQDREKNLEVELLEYYGL--KEQETIV----ME--LQNRLKLNNMEGRLLNLKIESLQADNRRLEAQV 238 (594)
Q Consensus 167 ~EI~~LR~lVeeLqERE~~LE~ELLEyy~L--KEQEa~v----~E--Le~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv 238 (594)
+-+++-+..|-.|+ -|.....+||..|.- .|.++.. +- =+..-.....-.+.|..++..+++||.+|+..+
T Consensus 104 Eqv~~~~d~vvql~-hels~k~ellr~ys~~~ees~~~~v~~~P~~~~~s~S~~~~~~~EaL~ekLk~~~een~~lr~k~ 182 (596)
T KOG4360|consen 104 EQVDAPWDRVVQLG-HELSRKDELLRGYSAAIEESEAASVCSTPLVSNESRSAFQRELLEALQEKLKPLEEENTQLRSKA 182 (596)
T ss_pred hhhcchHHHHHHhh-hhhhhhhhhhheeeeccccccccccccCCCccCcchhhHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 33444444444443 356666777777753 2332220 00 000011111235667778888888888877555
Q ss_pred HH---------------HHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045262 239 AD---------------HAKTVSELEAAKTKIKLLKKKLRTEAEQN 269 (594)
Q Consensus 239 ~e---------------~~~v~~ELE~ar~kir~LqkKl~~~a~q~ 269 (594)
.. |..++++|-.+..+++-+++.|+....++
T Consensus 183 ~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el 228 (596)
T KOG4360|consen 183 MLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKEL 228 (596)
T ss_pred HHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 33567777777777777766666555544
No 177
>PF13514 AAA_27: AAA domain
Probab=86.86 E-value=87 Score=38.48 Aligned_cols=37 Identities=24% Similarity=0.178 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhc
Q 045262 305 KVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEIS 341 (594)
Q Consensus 305 keLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~ 341 (594)
..|+.++.++.....+|+.+..+|...+..++..+..
T Consensus 892 ~~l~~~l~~l~~~l~~l~~~~~~l~~~~~~~~~~l~~ 928 (1111)
T PF13514_consen 892 DELEAELEELEEELEELEEELEELQEERAELEQELEA 928 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666666555555554443
No 178
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=86.70 E-value=0.2 Score=59.16 Aligned_cols=178 Identities=23% Similarity=0.336 Sum_probs=0.0
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---------------hhhHHHHHHHHHHHHhhhhhhHHHHHHH
Q 045262 160 SEKDDCEQEVKNLKNMVQMLQDREKNLEVELLEYYGL---------------KEQETIVMELQNRLKLNNMEGRLLNLKI 224 (594)
Q Consensus 160 ~e~~d~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~L---------------KEQEa~v~ELe~~L~~k~~Ei~~L~~kI 224 (594)
.+-.|...+|+..+..+..|..+-.++..+|-++..- +.-.+.+..|.+.|......++.+.+..
T Consensus 356 ~EleDl~~eLe~~~~~~~~LeKKqr~fDk~l~e~k~~~~~~~~e~d~~q~e~r~~~te~~~Lk~~lee~~e~~e~lere~ 435 (859)
T PF01576_consen 356 GELEDLTSELEKAQAAAAELEKKQRKFDKQLAEWKAKVEELQAERDAAQREARELETELFKLKNELEELQEQLEELEREN 435 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 4556677788888888888888888888888777443 2334457777777777777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH--------HHHhhcCChh
Q 045262 225 ESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQ--------AHKAAAIDPD 296 (594)
Q Consensus 225 ~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~--------E~e~~~~d~E 296 (594)
..|+.|..-|..++.+..+.+.+|+.++..+-.=...++......-..+....+.+..|+.. +..+..++.+
T Consensus 436 k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~e~er~l~eKeeE 515 (859)
T PF01576_consen 436 KQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQEIERELQEKEEE 515 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 77777777777777776666666665554433222222222222222222222222222211 1222233333
Q ss_pred HHHH----HHHHHHHHHHHHH-------HHHHhHHHHHHhhHhHHhhhhhhh
Q 045262 297 TQSR----LQRLKVLEAEAED-------LRKSNMKLQLENSQLARRLESTQM 337 (594)
Q Consensus 297 ~ekK----lq~lkeLE~Ev~E-------LRr~NkeLQ~EKreL~~KL~sAe~ 337 (594)
++.. ...|..|+.++.+ +-|..+.|+-+..+|-++|+.+..
T Consensus 516 ~E~~Rr~~qr~l~~le~~LE~E~k~r~~~~r~kkKLE~~l~eLe~~ld~~n~ 567 (859)
T PF01576_consen 516 FEETRRNHQRQLESLEAELEEERKERAEALREKKKLESDLNELEIQLDHANR 567 (859)
T ss_dssp ----------------------------------------------------
T ss_pred HHHHHHhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3333 1234555544432 556777788888888777777653
No 179
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=86.45 E-value=29 Score=32.52 Aligned_cols=48 Identities=33% Similarity=0.439 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045262 220 LNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNR 270 (594)
Q Consensus 220 L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K 270 (594)
+.-.+..|+..+.+|+.++++. ..++..+..+.+.|+++++......|
T Consensus 64 l~~d~~~l~~~~~rL~~~~~~~---ere~~~~~~~~~~l~~~~~~~~~~~k 111 (151)
T PF11559_consen 64 LRSDIERLQNDVERLKEQLEEL---ERELASAEEKERQLQKQLKSLEAKLK 111 (151)
T ss_pred HHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333332 23344455555555555554444443
No 180
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=86.44 E-value=31 Score=41.13 Aligned_cols=41 Identities=22% Similarity=0.148 Sum_probs=23.7
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045262 203 VMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAK 243 (594)
Q Consensus 203 v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~ 243 (594)
.-+||++|+.+.+++.-+.-+..+|+..-.-++.++....+
T Consensus 93 ndklE~~Lankda~lrq~eekn~slqerLelaE~~l~qs~r 133 (916)
T KOG0249|consen 93 NDKLENELANKDADLRQNEEKNRSLQERLELAEPKLQQSLR 133 (916)
T ss_pred hHHHHHHHhCcchhhchhHHhhhhhhHHHHHhhHhhHhHHh
Confidence 45666666666666666666666665555555555555444
No 181
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=86.05 E-value=55 Score=35.41 Aligned_cols=150 Identities=25% Similarity=0.263 Sum_probs=77.4
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 045262 203 VMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTK 282 (594)
Q Consensus 203 v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~ 282 (594)
+..|+.+-.....+++.++.+...|+++|+.|+.....+...+++=|.- -=|. |=|||+. |++....
T Consensus 29 ~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~-isN~-LlKkl~~-----------l~keKe~ 95 (310)
T PF09755_consen 29 IESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEF-ISNT-LLKKLQQ-----------LKKEKET 95 (310)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH-HHHHHHH-----------HHHHHHH
Confidence 4455555555556777788888888888888876666555444433211 1111 1122222 2221111
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhh-hcc---hhhhH--HHHHHHHHH
Q 045262 283 LQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLE-ISV---LEDGE--REALNEMSQ 356 (594)
Q Consensus 283 Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~-~~~---~E~~e--v~~i~ee~~ 356 (594)
|- . +..++=|.-...|-|...+|+.||-+|...|..=+... +.+ +..-+ ......+..
T Consensus 96 L~--------------~--~~e~EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~~~q~~le 159 (310)
T PF09755_consen 96 LA--------------L--KYEQEEEFLTNDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKSAKQEELE 159 (310)
T ss_pred HH--------------H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 11 0 11122234455677777888888888887777654322 211 11100 012234456
Q ss_pred HHHHhhHHHHHHHHHHhhhhcchhhHHHHHHH
Q 045262 357 RLREENTSLSKEVEKLHADKCAGVEELVYLKW 388 (594)
Q Consensus 357 ~LR~~NedL~kQVEqLq~dRfseVEELVYLRW 388 (594)
.||.+--||-..+|+=| |-||.-=|
T Consensus 160 ~Lr~EKVdlEn~LE~EQ-------E~lvN~L~ 184 (310)
T PF09755_consen 160 RLRREKVDLENTLEQEQ-------EALVNRLW 184 (310)
T ss_pred HHHHHHHhHHHHHHHHH-------HHHHHHHH
Confidence 67777777777777643 55665555
No 182
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=85.66 E-value=46 Score=34.23 Aligned_cols=29 Identities=28% Similarity=0.343 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhHHHHHHhhHhHHhhhhh
Q 045262 307 LEAEAEDLRKSNMKLQLENSQLARRLEST 335 (594)
Q Consensus 307 LE~Ev~ELRr~NkeLQ~EKreL~~KL~sA 335 (594)
++.+|..|......-..|...|-.+|..|
T Consensus 87 ~~~~i~~l~ee~~~ke~Ea~~lq~el~~a 115 (246)
T PF00769_consen 87 AEAEIARLEEESERKEEEAEELQEELEEA 115 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443333333
No 183
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=85.59 E-value=19 Score=34.86 Aligned_cols=38 Identities=24% Similarity=0.238 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHHH-hhhhhhHHHHHHHHHHHHHHHHHHH
Q 045262 199 QETIVMELQNRLK-LNNMEGRLLNLKIESLQADNRRLEA 236 (594)
Q Consensus 199 QEa~v~ELe~~L~-~k~~Ei~~L~~kI~sLE~En~RLq~ 236 (594)
+.+.+.+|...+. ....++..+....+.|+.|...|..
T Consensus 56 ~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~ 94 (177)
T PF07798_consen 56 FKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQ 94 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466667766664 2334444444455555555444443
No 184
>PRK10884 SH3 domain-containing protein; Provisional
Probab=85.41 E-value=16 Score=36.94 Aligned_cols=15 Identities=27% Similarity=0.217 Sum_probs=7.4
Q ss_pred HHHHHHHHHhhhhhh
Q 045262 203 VMELQNRLKLNNMEG 217 (594)
Q Consensus 203 v~ELe~~L~~k~~Ei 217 (594)
+++||++|+.-+.++
T Consensus 95 lp~le~el~~l~~~l 109 (206)
T PRK10884 95 VPDLENQVKTLTDKL 109 (206)
T ss_pred HHHHHHHHHHHHHHH
Confidence 556655554444333
No 185
>PRK09343 prefoldin subunit beta; Provisional
Probab=85.31 E-value=27 Score=32.25 Aligned_cols=108 Identities=17% Similarity=0.247 Sum_probs=58.1
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHHH
Q 045262 206 LQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQI-LAVQERVTKLQ 284 (594)
Q Consensus 206 Le~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi-~~Lkq~v~~Lq 284 (594)
|..++...-.++..+..+|..+-.....|+.++.+...+.+||+....-.+..+-==.....+.+..+ .-|..++..+.
T Consensus 5 ~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie 84 (121)
T PRK09343 5 IPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLE 84 (121)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHH
Confidence 33444444566777777788888888888888888888888877443222222111111222233222 12222222222
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHH
Q 045262 285 EQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLAR 330 (594)
Q Consensus 285 ~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~ 330 (594)
.+++.||.....|+....++|.+-+++..
T Consensus 85 -----------------~~ik~lekq~~~l~~~l~e~q~~l~~ll~ 113 (121)
T PRK09343 85 -----------------LRSRTLEKQEKKLREKLKELQAKINEMLS 113 (121)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22555666666666666666666666543
No 186
>PRK10869 recombination and repair protein; Provisional
Probab=85.22 E-value=75 Score=36.27 Aligned_cols=46 Identities=17% Similarity=0.116 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhh
Q 045262 295 PDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEI 340 (594)
Q Consensus 295 ~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~ 340 (594)
.+++.+++.+.+.+....+|+.....+..+-.+++.+|..+...+.
T Consensus 327 ~~l~~eL~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA 372 (553)
T PRK10869 327 QQLLEEQQQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYA 372 (553)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666666666666666666666666666655544
No 187
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.91 E-value=86 Score=36.68 Aligned_cols=169 Identities=20% Similarity=0.217 Sum_probs=86.3
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 045262 203 VMELQNRLKLNNMEGRLLNLKIESLQADNRRLE-------AQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILA 275 (594)
Q Consensus 203 v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq-------~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~ 275 (594)
+.|||..+.....|++.++......++..++-- +-+-+-.++++ +..--+|-+|+ .+.+|.+..+.-
T Consensus 52 ~eEleaeyd~~R~Eldqtkeal~q~~s~hkk~~~~g~e~EesLLqESaakE--~~yl~kI~ele----neLKq~r~el~~ 125 (772)
T KOG0999|consen 52 LEELEAEYDLARTELDQTKEALGQYRSQHKKVARDGEEREESLLQESAAKE--EYYLQKILELE----NELKQLRQELTN 125 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhH--HHHHHHHHHHH----HHHHHHHHHHHH
Confidence 667888888888888888888877777766532 11222222222 11222333333 334444444444
Q ss_pred HHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHH
Q 045262 276 VQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMS 355 (594)
Q Consensus 276 Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~ 355 (594)
.+.....|...-.+.....+.+|.-. ..|-.|+.|.+=.-.+|-.+-.||-.-==+-|.+.+++--+ .=|-
T Consensus 126 ~q~E~erl~~~~sd~~e~~~~~E~qR---~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~s------QVEy 196 (772)
T KOG0999|consen 126 VQEENERLEKVHSDLKESNAAVEDQR---RRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQS------QVEY 196 (772)
T ss_pred HHHHHHHHHHHHHHhhhcchhhHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhh------hhhh
Confidence 44444444433222222223333221 22445666665555555444444422211112222211111 1234
Q ss_pred HHHHHhhHHHHHHHHHHhhhhcchhhHHHHHHHHH
Q 045262 356 QRLREENTSLSKEVEKLHADKCAGVEELVYLKWIN 390 (594)
Q Consensus 356 ~~LR~~NedL~kQVEqLq~dRfseVEELVYLRWVN 390 (594)
..|||++.+|..++|=|.+ -+||++-||-|-
T Consensus 197 EglkheikRleEe~elln~----q~ee~~~Lk~IA 227 (772)
T KOG0999|consen 197 EGLKHEIKRLEEETELLNS----QLEEAIRLKEIA 227 (772)
T ss_pred hHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 5688889999988888865 478888888774
No 188
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=84.40 E-value=88 Score=36.34 Aligned_cols=95 Identities=16% Similarity=0.141 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhH-HHHHHHHHHHHHHhhHHHHHHHHHHhhhhcchhhH
Q 045262 304 LKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGE-REALNEMSQRLREENTSLSKEVEKLHADKCAGVEE 382 (594)
Q Consensus 304 lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~e-v~~i~ee~~~LR~~NedL~kQVEqLq~dRfseVEE 382 (594)
+.++|..+-.|++.-..---.-.+|...++..+...+.+.+.+. .+.+.++...++..+...+.++=+.+..-
T Consensus 299 L~~ve~Rl~~L~~l~RKY~~~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~------ 372 (557)
T COG0497 299 LEEVEERLFALKSLARKYGVTIEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALSAIRKKA------ 372 (557)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 44444444444444443333333444444444433333333322 46677777888777777777666666543
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCcc
Q 045262 383 LVYLKWINACLRYELRNYQPPAGKT 407 (594)
Q Consensus 383 LVYLRWVNACLR~ELrn~q~p~gk~ 407 (594)
..=+.+|+-.||....=+.+++
T Consensus 373 ---A~~L~~~v~~eL~~L~Me~a~F 394 (557)
T COG0497 373 ---AKELEKEVTAELKALAMEKARF 394 (557)
T ss_pred ---HHHHHHHHHHHHHhcCCCCceE
Confidence 3445678888998777666654
No 189
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=84.22 E-value=8.6 Score=36.68 Aligned_cols=84 Identities=31% Similarity=0.386 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhcc----h
Q 045262 304 LKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHADKCA----G 379 (594)
Q Consensus 304 lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQVEqLq~dRfs----e 379 (594)
+.+|..++.+|+..+.+|+.+...|...|....+.+. .+.+...+..|+..+..|...++.|+.+... +
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t-------~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee 146 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEVKSLEAELASLSSEPT-------NEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEE 146 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHH
Confidence 4445555555555555555555555444443333322 2235566788889999999999999986655 2
Q ss_pred hhHH--HHHHHHHHHHH
Q 045262 380 VEEL--VYLKWINACLR 394 (594)
Q Consensus 380 VEEL--VYLRWVNACLR 394 (594)
++.+ -|-+|...|-.
T Consensus 147 ~~~~~~~~~~~~k~w~k 163 (169)
T PF07106_consen 147 KEKLEKEYKKWRKEWKK 163 (169)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 2222 37778877754
No 190
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=83.73 E-value=15 Score=31.55 Aligned_cols=60 Identities=20% Similarity=0.290 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH----HHHhHHHHHHHHHHHHHHHHHHH
Q 045262 203 VMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVA----DHAKTVSELEAAKTKIKLLKKKL 262 (594)
Q Consensus 203 v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~----e~~~v~~ELE~ar~kir~LqkKl 262 (594)
.-.||..+...-..|..|.++|..|+.+|..|.++-. +...++.+...|..+|+.|=.||
T Consensus 6 l~~LE~ki~~aveti~~Lq~e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~kl 69 (72)
T PF06005_consen 6 LEQLEEKIQQAVETIALLQMENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGKL 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4456666666666777777777777777666663322 22233345555555555554444
No 191
>PF13514 AAA_27: AAA domain
Probab=83.60 E-value=1.2e+02 Score=37.30 Aligned_cols=39 Identities=26% Similarity=0.264 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhh
Q 045262 300 RLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQML 338 (594)
Q Consensus 300 Klq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~ 338 (594)
...++..|..+...+......++.+..+....|+.++..
T Consensus 344 ~~~~i~~l~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~ 382 (1111)
T PF13514_consen 344 ARERIRELLQEREQLEQALAQARRELEEAERELEQLQAE 382 (1111)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777766777777777766666666554
No 192
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=83.44 E-value=1e+02 Score=38.42 Aligned_cols=33 Identities=24% Similarity=0.299 Sum_probs=23.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhhhhcchhhHHH
Q 045262 352 NEMSQRLREENTSLSKEVEKLHADKCAGVEELV 384 (594)
Q Consensus 352 ~ee~~~LR~~NedL~kQVEqLq~dRfseVEELV 384 (594)
+..+.+++..-+++-+++++|+.+..+-+.++-
T Consensus 806 ~~~ve~~~~~v~~~~~~~~~~~~~e~~~~k~i~ 838 (1141)
T KOG0018|consen 806 QRRVERWERSVEDLEKEIEGLKKDEEAAEKIIA 838 (1141)
T ss_pred HHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHh
Confidence 444566677778888888888887766555543
No 193
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=83.19 E-value=1.2e+02 Score=37.01 Aligned_cols=70 Identities=26% Similarity=0.375 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhchhhHHH-----------------HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 045262 173 KNMVQMLQDREKNLEVELLEYYGLKEQETI-----------------VMELQNRLKLNNMEGRLLNLKIESLQADNRRLE 235 (594)
Q Consensus 173 R~lVeeLqERE~~LE~ELLEyy~LKEQEa~-----------------v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq 235 (594)
.+.+.+|+--.-.|.-.|++--||+|...+ +.+||.+|+....+|..|..+...||.|.+.||
T Consensus 47 eniiqdlrserdalhe~lvdkaglneSviie~sk~vstqetriyRrdv~llEddlk~~~sQiriLQn~c~~lE~ekq~lQ 126 (1265)
T KOG0976|consen 47 ENIIQDLRSERDALHESLVDKAGLNESVIIEQSKKVSTQETRIYRRDVNLLEDDLKHHESQIRILQNKCLRLEMEKQKLQ 126 (1265)
T ss_pred HHHHHHHHhhHHHHHHHHHHHhhccchhhhhhcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777788888888875543 667888888888888888888888888888888
Q ss_pred HHHHHHH
Q 045262 236 AQVADHA 242 (594)
Q Consensus 236 ~qv~e~~ 242 (594)
+-++.+.
T Consensus 127 ~ti~~~q 133 (1265)
T KOG0976|consen 127 DTIQGAQ 133 (1265)
T ss_pred HHHHHHH
Confidence 7665443
No 194
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=82.63 E-value=52 Score=32.43 Aligned_cols=36 Identities=17% Similarity=0.264 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhh
Q 045262 304 LKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLE 339 (594)
Q Consensus 304 lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~ 339 (594)
+..|...+.+|+....+++.++..|.-+..+|+++.
T Consensus 114 ~~~l~~~l~~l~~kl~e~k~k~~~l~ar~~~a~a~~ 149 (221)
T PF04012_consen 114 VEKLKEQLEELEAKLEELKSKREELKARENAAKAQK 149 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666677777777777777777777777776533
No 195
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=82.18 E-value=1.4e+02 Score=37.04 Aligned_cols=78 Identities=27% Similarity=0.306 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 045262 166 EQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTV 245 (594)
Q Consensus 166 e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~ 245 (594)
++++..|+..+..++.-...|+.+...|...-|+ ..+.+..+.-+-..++..+.+.+....+++.++..+....
T Consensus 635 ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le~------~~~~~~~~~~er~~~~~~~~~~~~r~~~ie~~~~~l~~qk 708 (1072)
T KOG0979|consen 635 EEEIQKLKAEIDIRSSTLRELEEKKQKERKELEE------EQKKLKLLKRERTKLNSELKSYQQRKERIENLVVDLDRQE 708 (1072)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888888888888888888777665443 3345555566777777777777777777777777777666
Q ss_pred HHHH
Q 045262 246 SELE 249 (594)
Q Consensus 246 ~ELE 249 (594)
+++.
T Consensus 709 ee~~ 712 (1072)
T KOG0979|consen 709 EEYA 712 (1072)
T ss_pred HHHH
Confidence 6663
No 196
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=82.11 E-value=50 Score=31.80 Aligned_cols=155 Identities=23% Similarity=0.262 Sum_probs=74.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHHHH----------hHHHHHHHH
Q 045262 213 NNMEGRLLNLKIESLQADNRRLEAQVADHAKTVS-----ELEAAKTKIKLLKKKLRTEAEQ----------NREQILAVQ 277 (594)
Q Consensus 213 k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~-----ELE~ar~kir~LqkKl~~~a~q----------~K~qi~~Lk 277 (594)
+..+|+.++.+...|+....+++.++....-+-+ +++..+.+|..|..||...-.. +-..+.-++
T Consensus 4 k~~~i~~~Rl~~~~lk~~l~k~~~ql~~ke~lge~L~~iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~k 83 (177)
T PF13870_consen 4 KRNEISKLRLKNITLKHQLAKLEEQLRQKEELGEGLHLIDFEQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVK 83 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777888888888888877777665554433 5566666666666666432211 111122223
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHH
Q 045262 278 ERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQR 357 (594)
Q Consensus 278 q~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~ 357 (594)
++...+... ......++..+...+..+..++..++.....+...+..|..+...- ....+..+. ...+++...
T Consensus 84 eKl~~~~~~---~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~~~~~~~l~~~~~~~--~~P~ll~Dy--~~~~~~~~~ 156 (177)
T PF13870_consen 84 EKLHFLSEE---LERLKQELKDREEELAKLREELYRVKKERDKLRKQNKKLRQQGGLL--GVPALLRDY--DKTKEEVEE 156 (177)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCcHHHHHH--HHHHHHHHH
Confidence 333222221 1111233444555555555555555555555555555543221111 111122221 122344555
Q ss_pred HHHhhHHHHHHHHHHhh
Q 045262 358 LREENTSLSKEVEKLHA 374 (594)
Q Consensus 358 LR~~NedL~kQVEqLq~ 374 (594)
||..-..|-+.++.|.+
T Consensus 157 l~~~i~~l~rk~~~l~~ 173 (177)
T PF13870_consen 157 LRKEIKELERKVEILEM 173 (177)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66555556555555543
No 197
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=82.03 E-value=2.1 Score=40.57 Aligned_cols=39 Identities=28% Similarity=0.397 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 045262 199 QETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQ 237 (594)
Q Consensus 199 QEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~q 237 (594)
-|+.+.+||.++..|.+||..|+.++..+...|.+|+..
T Consensus 92 yE~~~~kLe~e~~~Kdsei~~Lr~~L~~~~~~n~~Lekr 130 (131)
T PF04859_consen 92 YEIVVKKLEAELRAKDSEIDRLREKLDELNRANKSLEKR 130 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 357899999999999999999999999999999999754
No 198
>PF15294 Leu_zip: Leucine zipper
Probab=81.02 E-value=63 Score=34.43 Aligned_cols=101 Identities=19% Similarity=0.341 Sum_probs=63.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHH
Q 045262 217 GRLLNLKIESLQADNRRLEAQVADHA----KTVSELEAAKTKIKLLKKKLRTEAEQ------NREQILAVQERVTKLQEQ 286 (594)
Q Consensus 217 i~~L~~kI~sLE~En~RLq~qv~e~~----~v~~ELE~ar~kir~LqkKl~~~a~q------~K~qi~~Lkq~v~~Lq~~ 286 (594)
+..|.+.|..|++||++|++.+..+. .+..|-......++.||. ++..... ..+++.-|..+++.++.+
T Consensus 127 ~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl~~~L~~lq~-~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e 205 (278)
T PF15294_consen 127 SELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKLEAQLKELQD-EQGDQKGKKDLSFKAQDLSDLENKMAALKSE 205 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhccccccccccchhhHHHHHHHHHHH
Confidence 44589999999999999998776544 344455556666677776 3333322 124567788888888755
Q ss_pred HHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 045262 287 AHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLE 324 (594)
Q Consensus 287 E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~E 324 (594)
=+.. +..+-...+.|+..+.--+-....+|.+
T Consensus 206 ~ek~------~~d~~~~~k~L~e~L~~~KhelL~~Qeq 237 (278)
T PF15294_consen 206 LEKA------LQDKESQQKALEETLQSCKHELLRVQEQ 237 (278)
T ss_pred HHHH------HHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 2211 2222234566777777666666666665
No 199
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=80.94 E-value=1.6e+02 Score=36.75 Aligned_cols=79 Identities=19% Similarity=0.270 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 045262 246 SELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLEN 325 (594)
Q Consensus 246 ~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EK 325 (594)
++.-...-+++.||.++..+.++-.-.+..|+.--.+++..+.+. .+|+.| -..|-.+-.-++.....|+.+.
T Consensus 300 k~kt~lel~~kdlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL----~~I~Pk---y~~l~~ee~~~~~rl~~l~~~~ 372 (1200)
T KOG0964|consen 300 KKKTKLELKIKDLQDQITGNEQQRNLALHVLQKVKDKIEEKKDEL----SKIEPK---YNSLVDEEKRLKKRLAKLEQKQ 372 (1200)
T ss_pred HHhhhhhhhhHHHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHH----HHhhhH---HHHHHhHHHHHHHHHHHHHHHH
Confidence 333344455677777777666665555555555555554443222 122222 3445555566777777788877
Q ss_pred hHhHHh
Q 045262 326 SQLARR 331 (594)
Q Consensus 326 reL~~K 331 (594)
++|..|
T Consensus 373 ~~l~~K 378 (1200)
T KOG0964|consen 373 RDLLAK 378 (1200)
T ss_pred HHHHHh
Confidence 777655
No 200
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=80.71 E-value=82 Score=33.41 Aligned_cols=55 Identities=18% Similarity=0.204 Sum_probs=23.5
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 209 RLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEA 266 (594)
Q Consensus 209 ~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a 266 (594)
+|.....+|+.+..++..++.++..+++.+.. +..+++..+..|+..+..+...+
T Consensus 53 ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~---l~~eI~~~~~~I~~r~~~l~~ra 107 (265)
T COG3883 53 EIESLDNQIEEIQSKIDELQKEIDQSKAEIKK---LQKEIAELKENIVERQELLKKRA 107 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444433332 23444455555555554444433
No 201
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=80.58 E-value=1.1e+02 Score=34.66 Aligned_cols=61 Identities=25% Similarity=0.274 Sum_probs=34.2
Q ss_pred HHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q 045262 310 EAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHAD 375 (594)
Q Consensus 310 Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQVEqLq~d 375 (594)
|..+|+.-..-++.|...|-.+++...+.+. +....+..+...+|+-...+..+...+..-
T Consensus 275 el~~l~~E~~~~~ee~~~l~~Qi~~l~~e~~-----d~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (511)
T PF09787_consen 275 ELEELKQERDHLQEEIQLLERQIEQLRAELQ-----DLEAQLEGEQESFREQPQELSQQLEPELTT 335 (511)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhHHHHHHHHHHHHHHHHHHHhch
Confidence 4667777777777777777666655554443 122233444555555555555555444443
No 202
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=80.33 E-value=37 Score=30.56 Aligned_cols=37 Identities=22% Similarity=0.385 Sum_probs=26.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 045262 215 MEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAA 251 (594)
Q Consensus 215 ~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~a 251 (594)
.+...+..++..+..+...|+.++.++..+.++|+..
T Consensus 10 ~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l 46 (110)
T TIGR02338 10 AQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERL 46 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3455566677777777777777777777777777644
No 203
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=79.84 E-value=0.57 Score=55.51 Aligned_cols=37 Identities=27% Similarity=0.377 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhh
Q 045262 302 QRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQML 338 (594)
Q Consensus 302 q~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~ 338 (594)
..+.++...+..|+|.|+.|+.|..+|+-.++.+...
T Consensus 419 ~~lee~~e~~e~lere~k~L~~El~dl~~q~~~~~k~ 455 (859)
T PF01576_consen 419 NELEELQEQLEELERENKQLQDELEDLTSQLDDAGKS 455 (859)
T ss_dssp -------------------------------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHHhhccchhhhhhhccc
Confidence 4456677788888888899998888888777766543
No 204
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=79.73 E-value=1.7e+02 Score=36.53 Aligned_cols=37 Identities=30% Similarity=0.386 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhh
Q 045262 301 LQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQM 337 (594)
Q Consensus 301 lq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~ 337 (594)
+.+..++|..+..++....++..+.+.|+.++.+.+.
T Consensus 401 ~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~ 437 (1141)
T KOG0018|consen 401 LERRAELEARIKQLKESVERLDKRRNKLAAKITSLSR 437 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456778888888888888888888888888777654
No 205
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=79.57 E-value=26 Score=36.08 Aligned_cols=20 Identities=30% Similarity=0.471 Sum_probs=12.4
Q ss_pred HHHHHHHHHhhHHHHHHHHH
Q 045262 352 NEMSQRLREENTSLSKEVEK 371 (594)
Q Consensus 352 ~ee~~~LR~~NedL~kQVEq 371 (594)
..|.++|-++|..|-+||+.
T Consensus 192 ~~EydrLlee~~~Lq~~i~~ 211 (216)
T KOG1962|consen 192 QDEYDRLLEEYSKLQEQIES 211 (216)
T ss_pred ccHHHHHHHHHHHHHHHHhc
Confidence 34455666667777777763
No 206
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=79.53 E-value=18 Score=34.60 Aligned_cols=64 Identities=25% Similarity=0.315 Sum_probs=41.5
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 161 EKDDCEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVAD 240 (594)
Q Consensus 161 e~~d~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e 240 (594)
+......+|..|+..+.+|+.....|+.+|-.+... ... ..|...|..|+.|+..|++.+..
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~----~t~--------------~el~~~i~~l~~e~~~l~~kL~~ 134 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSE----PTN--------------EELREEIEELEEEIEELEEKLEK 134 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCH--------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556789999999999999988888888776654 223 33445555555555555554444
Q ss_pred HH
Q 045262 241 HA 242 (594)
Q Consensus 241 ~~ 242 (594)
+.
T Consensus 135 l~ 136 (169)
T PF07106_consen 135 LR 136 (169)
T ss_pred HH
Confidence 43
No 207
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=79.34 E-value=63 Score=31.62 Aligned_cols=23 Identities=22% Similarity=0.315 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHH
Q 045262 249 EAAKTKIKLLKKKLRTEAEQNRE 271 (594)
Q Consensus 249 E~ar~kir~LqkKl~~~a~q~K~ 271 (594)
+.|+.+.+.|+.++...-..+|.
T Consensus 85 d~~~~e~k~L~~~v~~Le~e~r~ 107 (158)
T PF09744_consen 85 DQWRQERKDLQSQVEQLEEENRQ 107 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777777777666665543
No 208
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=79.18 E-value=91 Score=33.03 Aligned_cols=34 Identities=12% Similarity=0.107 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 045262 199 QETIVMELQNRLKLNNMEGRLLNLKIESLQADNR 232 (594)
Q Consensus 199 QEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~ 232 (594)
....+..++.+|.....+++....++...+.+|.
T Consensus 168 ~~~a~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~ 201 (362)
T TIGR01010 168 RKDTIAFAENEVKEAEQRLNATKAELLKYQIKNK 201 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3445666666666666666666666666666553
No 209
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=79.15 E-value=98 Score=33.34 Aligned_cols=30 Identities=20% Similarity=0.364 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045262 166 EQEVKNLKNMVQMLQDREKNLEVELLEYYG 195 (594)
Q Consensus 166 e~EI~~LR~lVeeLqERE~~LE~ELLEyy~ 195 (594)
-..+..++..+.+|.++--.+--++-+|..
T Consensus 47 n~kvrE~~e~~~elr~~rdeineev~elK~ 76 (294)
T COG1340 47 NAKVRELREKAQELREERDEINEEVQELKE 76 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666666655555555555544
No 210
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=78.94 E-value=34 Score=30.46 Aligned_cols=37 Identities=22% Similarity=0.373 Sum_probs=25.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 045262 215 MEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAA 251 (594)
Q Consensus 215 ~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~a 251 (594)
.+...|...+..|..+...|..++.++..+..+|+.+
T Consensus 6 ~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l 42 (105)
T cd00632 6 AQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKL 42 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3445566666777777777777777777777777644
No 211
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=78.37 E-value=28 Score=29.93 Aligned_cols=20 Identities=30% Similarity=0.481 Sum_probs=9.5
Q ss_pred HHHHHHHHHhHHHHHHhhHh
Q 045262 309 AEAEDLRKSNMKLQLENSQL 328 (594)
Q Consensus 309 ~Ev~ELRr~NkeLQ~EKreL 328 (594)
.+-.+|++.|.+|+.+....
T Consensus 39 ~e~~~L~~en~~L~~e~~~~ 58 (72)
T PF06005_consen 39 EENEELKEENEQLKQERNAW 58 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555444333
No 212
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=78.24 E-value=60 Score=30.39 Aligned_cols=56 Identities=21% Similarity=0.246 Sum_probs=27.7
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045262 212 LNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNR 270 (594)
Q Consensus 212 ~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K 270 (594)
....++..|...+..|+.+...++.+++ .+....-.+..+++.++.+++.......
T Consensus 63 ~l~~d~~~l~~~~~rL~~~~~~~ere~~---~~~~~~~~l~~~~~~~~~~~k~~kee~~ 118 (151)
T PF11559_consen 63 RLRSDIERLQNDVERLKEQLEELERELA---SAEEKERQLQKQLKSLEAKLKQEKEELQ 118 (151)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555544444 3334444455555555555554444433
No 213
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=78.11 E-value=21 Score=31.59 Aligned_cols=47 Identities=26% Similarity=0.347 Sum_probs=35.7
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 045262 203 VMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELE 249 (594)
Q Consensus 203 v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE 249 (594)
+-.||..+...-..|..|.++|+-|.++|..|..++.....-+.+|+
T Consensus 6 leqLE~KIqqAvdtI~LLqmEieELKekn~~L~~e~~~~~~~r~~L~ 52 (79)
T PRK15422 6 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELE 52 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 45677777777788999999999999999999987776554444443
No 214
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.90 E-value=1.5e+02 Score=34.96 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 166 EQEVKNLKNMVQMLQDREKNLEVE 189 (594)
Q Consensus 166 e~EI~~LR~lVeeLqERE~~LE~E 189 (594)
...+..|...|+.|.-|--++|.+
T Consensus 331 ~~Q~~~~~~~~~~~~Tr~Er~Er~ 354 (852)
T KOG4787|consen 331 HLQLELAESQVQHLNTKIERLEKT 354 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345777777788877777666654
No 215
>PRK12704 phosphodiesterase; Provisional
Probab=77.77 E-value=1.4e+02 Score=34.24 Aligned_cols=14 Identities=43% Similarity=0.565 Sum_probs=5.6
Q ss_pred HHHhhHHHHHHHHH
Q 045262 358 LREENTSLSKEVEK 371 (594)
Q Consensus 358 LR~~NedL~kQVEq 371 (594)
++++-..+.+++|.
T Consensus 167 ~~~~~~~~~~~~~~ 180 (520)
T PRK12704 167 ARHEAAVLIKEIEE 180 (520)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333344444443
No 216
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=77.52 E-value=1.4e+02 Score=34.26 Aligned_cols=74 Identities=23% Similarity=0.276 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhhhhh---hHHHHHHHHHHHHH-----------HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 201 TIVMELQNRLKLNNME---GRLLNLKIESLQAD-----------NRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEA 266 (594)
Q Consensus 201 a~v~ELe~~L~~k~~E---i~~L~~kI~sLE~E-----------n~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a 266 (594)
..|.+|+-...-..+= |..|...|+-|=++ ++.|+.-..-.+-..+.|+..|+....||=+++
T Consensus 345 ~kvkeLQ~k~~kQqvfvDiinkLk~niEeLIedKY~viLEKnd~~k~lqnLqe~la~tqk~LqEsr~eKetLqlelk--- 421 (527)
T PF15066_consen 345 KKVKELQMKITKQQVFVDIINKLKENIEELIEDKYRVILEKNDIEKTLQNLQEALANTQKHLQESRNEKETLQLELK--- 421 (527)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH---
Confidence 4455554433333332 23444555555544 344666666666677788888888777774433
Q ss_pred HHhHHHHHHHHH
Q 045262 267 EQNREQILAVQE 278 (594)
Q Consensus 267 ~q~K~qi~~Lkq 278 (594)
+.|+.-..|++
T Consensus 422 -K~k~nyv~LQE 432 (527)
T PF15066_consen 422 -KIKANYVHLQE 432 (527)
T ss_pred -HHhhhHHHHHH
Confidence 33444444444
No 217
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=77.37 E-value=85 Score=35.75 Aligned_cols=37 Identities=22% Similarity=0.329 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 045262 243 KTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQER 279 (594)
Q Consensus 243 ~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~ 279 (594)
.+++.+..|+.++++++.+.+.....--++|.-|++|
T Consensus 407 ~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQ 443 (493)
T KOG0804|consen 407 KLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQ 443 (493)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555544444333333333333333
No 218
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=77.25 E-value=83 Score=31.51 Aligned_cols=104 Identities=21% Similarity=0.269 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 166 EQEVKNLKNMVQMLQDREK---NLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHA 242 (594)
Q Consensus 166 e~EI~~LR~lVeeLqERE~---~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~ 242 (594)
...+..+.+.+.+|++==. -|..+|-+.-.+|..-+.+ ..+.+.+..+|..-+.++.+++..++++.
T Consensus 68 ~~~f~~~~~tl~~LE~~GFnV~~l~~RL~kLL~lk~~~~~~----------~e~~k~le~~~~~~~~~~~~~e~~i~~Le 137 (190)
T PF05266_consen 68 RSSFESLMKTLSELEEHGFNVKFLRSRLNKLLSLKDDQEKL----------LEERKKLEKKIEEKEAELKELESEIKELE 137 (190)
T ss_pred HHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHhHHHH----------HHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 4466666666666655221 2333333333333332222 23344444444444555555555555555
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 045262 243 KTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQER 279 (594)
Q Consensus 243 ~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~ 279 (594)
.-..+|......++..+.....+..+.+..+..|++.
T Consensus 138 ~ki~el~~~~~~~~~~ke~~~~ei~~lks~~~~l~~~ 174 (190)
T PF05266_consen 138 MKILELQRQAAKLKEKKEAKDKEISRLKSEAEALKEE 174 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444443333333333333333333333
No 219
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=77.06 E-value=2e+02 Score=35.85 Aligned_cols=45 Identities=22% Similarity=0.387 Sum_probs=34.1
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhh
Q 045262 294 DPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQML 338 (594)
Q Consensus 294 d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~ 338 (594)
..++++++..+++|+..+.|.+-...++-.+.-++..+++.++..
T Consensus 424 e~~l~~~~e~i~~l~~si~e~~~r~~~~~~~~~~~k~~~del~~~ 468 (1200)
T KOG0964|consen 424 ESELKEKLEEIKELESSINETKGRMEEFDAENTELKRELDELQDK 468 (1200)
T ss_pred HHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777888888888888888888888877777777777776543
No 220
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=76.95 E-value=1.1e+02 Score=32.90 Aligned_cols=61 Identities=11% Similarity=0.077 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH------HHHHHHHhHHHHHHHHHHHHHHHHHH
Q 045262 201 TIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLE------AQVADHAKTVSELEAAKTKIKLLKKK 261 (594)
Q Consensus 201 a~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq------~qv~e~~~v~~ELE~ar~kir~LqkK 261 (594)
.....|+.+|..-..++.....++...+.+|.-+. -.......+..++..++++...++.+
T Consensus 171 ~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~ 237 (444)
T TIGR03017 171 KAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSK 237 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666666666653321 11223333344555555544444443
No 221
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=76.77 E-value=85 Score=33.39 Aligned_cols=29 Identities=31% Similarity=0.523 Sum_probs=16.4
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 045262 236 AQVADHAKTVSELEAAKTKIKLLKKKLRT 264 (594)
Q Consensus 236 ~qv~e~~~v~~ELE~ar~kir~LqkKl~~ 264 (594)
+.+.+...++..|+.|+-++.=|+.++..
T Consensus 149 ~dl~e~~~~l~DLesa~vkV~WLR~~L~E 177 (269)
T PF05278_consen 149 SDLKEMIATLKDLESAKVKVDWLRSKLEE 177 (269)
T ss_pred HHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence 44555555566666665555555555554
No 222
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=76.72 E-value=1.4e+02 Score=34.00 Aligned_cols=42 Identities=24% Similarity=0.294 Sum_probs=25.8
Q ss_pred HHHhhHHHHHHHHHHhhh----hcchhhHHHHHHHHHHHHHHHHhh
Q 045262 358 LREENTSLSKEVEKLHAD----KCAGVEELVYLKWINACLRYELRN 399 (594)
Q Consensus 358 LR~~NedL~kQVEqLq~d----RfseVEELVYLRWVNACLR~ELrn 399 (594)
||+.-++.-++|+.++.. |++=.+++-.|.=.|.-++.|-.|
T Consensus 145 l~e~l~~f~~~v~~~~~~~~~~~~~L~~qi~~L~~~n~~i~~ea~n 190 (475)
T PRK10361 145 LREQLDGFRRQVQDSFGKEAQERHTLAHEIRNLQQLNAQMAQEAIN 190 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666777777755 455556666666666666666443
No 223
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=76.33 E-value=91 Score=31.47 Aligned_cols=66 Identities=20% Similarity=0.311 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 045262 248 LEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQL 323 (594)
Q Consensus 248 LE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~ 323 (594)
|...|.+|..+.++=+.....+..++..|.++-..+..+- .+++. .+..||.||.+||+.-.+++.
T Consensus 152 l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn-------~eie~---a~~~Le~ei~~l~~~~~~~~~ 217 (221)
T PF05700_consen 152 LAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKN-------LEIEV---ACEELEQEIEQLKRKAAELKE 217 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHH---HHHHHHHHHHHHHHHHHHHhc
Confidence 3334444444444444444445555555555555444432 23332 255677777777766555543
No 224
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=76.13 E-value=98 Score=31.78 Aligned_cols=29 Identities=21% Similarity=0.274 Sum_probs=21.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 214 NMEGRLLNLKIESLQADNRRLEAQVADHA 242 (594)
Q Consensus 214 ~~Ei~~L~~kI~sLE~En~RLq~qv~e~~ 242 (594)
.++|..++++|..|+.+..+-++.+....
T Consensus 3 e~~va~lnrri~~leeele~aqErl~~a~ 31 (205)
T KOG1003|consen 3 EADVAALNRRIQLLEEELDRAQERLATAL 31 (205)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788889999999888777665554433
No 225
>PRK00106 hypothetical protein; Provisional
Probab=76.12 E-value=1.6e+02 Score=34.12 Aligned_cols=11 Identities=18% Similarity=0.045 Sum_probs=6.8
Q ss_pred CCcccchhhhh
Q 045262 563 NSDLVSSDAYK 573 (594)
Q Consensus 563 ~~~~g~~~~~k 573 (594)
|+.-|+.++|-
T Consensus 468 ~~~~gV~~~ya 478 (535)
T PRK00106 468 NSFDGVQNSFA 478 (535)
T ss_pred hcCCcHHHHHH
Confidence 45557777763
No 226
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=76.10 E-value=70 Score=30.04 Aligned_cols=68 Identities=15% Similarity=0.222 Sum_probs=32.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 045262 215 MEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQ 286 (594)
Q Consensus 215 ~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~ 286 (594)
.-|+.|...|..++.|..-|+.+++....-+.++ +.+|=.|-..... .+....++..|+.++..|+.+
T Consensus 16 ~~ve~L~s~lr~~E~E~~~l~~el~~l~~~r~~l---~~Eiv~l~~~~e~-~~~~~~~~~~L~~el~~l~~r 83 (120)
T PF12325_consen 16 QLVERLQSQLRRLEGELASLQEELARLEAERDEL---REEIVKLMEENEE-LRALKKEVEELEQELEELQQR 83 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3455666666666666666666655544433332 1222222221111 122234455555566555554
No 227
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=76.02 E-value=1e+02 Score=35.06 Aligned_cols=21 Identities=29% Similarity=0.120 Sum_probs=13.6
Q ss_pred HhHHHHHHhhHhHHhhhhhhh
Q 045262 317 SNMKLQLENSQLARRLESTQM 337 (594)
Q Consensus 317 ~NkeLQ~EKreL~~KL~sAe~ 337 (594)
..-+||+|-|+|..-|++-+.
T Consensus 436 ~I~dLqEQlrDlmf~le~qqk 456 (493)
T KOG0804|consen 436 KITDLQEQLRDLMFFLEAQQK 456 (493)
T ss_pred HHHHHHHHHHhHheehhhhhh
Confidence 345677777887776665543
No 228
>PRK10698 phage shock protein PspA; Provisional
Probab=75.82 E-value=96 Score=31.51 Aligned_cols=39 Identities=13% Similarity=0.122 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhh
Q 045262 301 LQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLE 339 (594)
Q Consensus 301 lq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~ 339 (594)
-..+..|...+..|+....++...+..|.-|..+|+++.
T Consensus 112 ~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~ 150 (222)
T PRK10698 112 DETLARMKKEIGELENKLSETRARQQALMLRHQAASSSR 150 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344677888888888888888888999999999998743
No 229
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=75.50 E-value=1.5e+02 Score=35.34 Aligned_cols=43 Identities=21% Similarity=0.373 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHH------hHHHHHHh
Q 045262 273 ILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKS------NMKLQLEN 325 (594)
Q Consensus 273 i~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~------NkeLQ~EK 325 (594)
+-.||=+...|+.+. -|.|+|+..-.+|-+ |+++. +.+||+|+
T Consensus 183 vSeLKLkltalEkeq-------~e~E~K~R~se~l~q---evn~~kv~e~~~erlqye~ 231 (861)
T KOG1899|consen 183 VSELKLKLTALEKEQ-------NETEKKLRLSENLMQ---EVNQSKVGEVVQERLQYET 231 (861)
T ss_pred HHHhHHHHHHHHHHh-------hhHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHh
Confidence 334455555555443 345566444333333 33333 45666664
No 230
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=75.47 E-value=80 Score=37.95 Aligned_cols=111 Identities=24% Similarity=0.341 Sum_probs=57.4
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHHHH----------HHH
Q 045262 203 VMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHA----KTVSELEAAKTKIKLLKKKLRTE----------AEQ 268 (594)
Q Consensus 203 v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~----~v~~ELE~ar~kir~LqkKl~~~----------a~q 268 (594)
..+|+.+|..-..+-+.|...+...+.+.+.++.++.+.- .+..+|+.++.-...+.-+++.. ...
T Consensus 591 ~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~ 670 (769)
T PF05911_consen 591 KKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKD 670 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH
Confidence 4455555555555555555544444444444444443332 23334444444444444444333 223
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHH
Q 045262 269 NREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRK 316 (594)
Q Consensus 269 ~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr 316 (594)
+..++..|..+|..|+.+=+.......|+..| +++||.++.-..+
T Consensus 671 ~e~E~~~l~~Ki~~Le~Ele~er~~~~e~~~k---c~~Le~el~r~~~ 715 (769)
T PF05911_consen 671 LEAEAEELQSKISSLEEELEKERALSEELEAK---CRELEEELERMKK 715 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhhhH---HHHHHHHHHhhhc
Confidence 35566778888888887633334455565555 5567776655543
No 231
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=75.17 E-value=47 Score=32.94 Aligned_cols=41 Identities=32% Similarity=0.440 Sum_probs=19.6
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 045262 242 AKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTK 282 (594)
Q Consensus 242 ~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~ 282 (594)
....++|+..+.++..|++++..-....-+.|..+++.+..
T Consensus 106 ~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~ 146 (188)
T PF03962_consen 106 EELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKI 146 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 33444555555555555555554444444444444444333
No 232
>PRK11281 hypothetical protein; Provisional
Probab=75.13 E-value=95 Score=38.78 Aligned_cols=31 Identities=19% Similarity=0.007 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHhHHHHHHhhHhHHhhhhhhh
Q 045262 307 LEAEAEDLRKSNMKLQLENSQLARRLESTQM 337 (594)
Q Consensus 307 LE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~ 337 (594)
|+.|..-|...|.-++.+-.....+.+.++.
T Consensus 197 l~ae~~~l~~~~~~~~~~l~~~~~l~~l~~~ 227 (1113)
T PRK11281 197 LQAEQALLNAQNDLQRKSLEGNTQLQDLLQK 227 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 4444444444444444444444444444333
No 233
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=75.08 E-value=1.5e+02 Score=33.47 Aligned_cols=15 Identities=27% Similarity=0.530 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHHHHH
Q 045262 165 CEQEVKNLKNMVQML 179 (594)
Q Consensus 165 ~e~EI~~LR~lVeeL 179 (594)
..+|+..|+..++++
T Consensus 121 ~~~El~~l~~~l~~l 135 (511)
T PF09787_consen 121 LDQELRRLRRQLEEL 135 (511)
T ss_pred HHHHHHHHHHHHHHH
Confidence 355666666666666
No 234
>PRK11519 tyrosine kinase; Provisional
Probab=74.95 E-value=1e+02 Score=36.07 Aligned_cols=32 Identities=13% Similarity=0.101 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 045262 201 TIVMELQNRLKLNNMEGRLLNLKIESLQADNR 232 (594)
Q Consensus 201 a~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~ 232 (594)
..+..|++||..-..+++.....+...+.+|.
T Consensus 267 ~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~ 298 (719)
T PRK11519 267 KSLAFLAQQLPEVRSRLDVAENKLNAFRQDKD 298 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44566666666666666666666666655543
No 235
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=74.86 E-value=1.8e+02 Score=34.47 Aligned_cols=35 Identities=34% Similarity=0.442 Sum_probs=21.9
Q ss_pred hhhhcchhhHHHH--HHHHHHHHHHHHhhc-CCCCCcchhhh
Q 045262 373 HADKCAGVEELVY--LKWINACLRYELRNY-QPPAGKTVARD 411 (594)
Q Consensus 373 q~dRfseVEELVY--LRWVNACLR~ELrn~-q~p~gk~sA~D 411 (594)
|.+=|.+|.+||- |.=-|.|+ .-| |+-+||+--+.
T Consensus 374 Q~~VF~e~~~lv~S~lDGYnVCI----FAYGQTGSGKTyTM~ 411 (670)
T KOG0239|consen 374 QDDVFEEVSPLVQSALDGYNVCI----FAYGQTGSGKTYTMS 411 (670)
T ss_pred HHHHHHHHHHHHHHHhcCcceeE----EEecccCCCcccccc
Confidence 4455778888873 44456664 345 78889985433
No 236
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=74.10 E-value=2e+02 Score=34.47 Aligned_cols=117 Identities=15% Similarity=0.241 Sum_probs=63.2
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-------HhHHHHHHHH
Q 045262 205 ELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAE-------QNREQILAVQ 277 (594)
Q Consensus 205 ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~-------q~K~qi~~Lk 277 (594)
.++..+.......+.+-..|..|++.+..|+.++. .++.++......+.-.-.+....++ .-..++-.|.
T Consensus 517 k~qedi~~~k~qee~~~kqie~Lee~~~~Lrnele---s~~eel~~k~~Ev~~kl~ksEen~r~~e~e~~~k~kq~k~le 593 (786)
T PF05483_consen 517 KQQEDINNSKKQEEKMLKQIENLEETNTQLRNELE---SVKEELKQKGEEVKCKLDKSEENARSIECEILKKEKQMKILE 593 (786)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHhhhHHHHHHHH
Confidence 34445555666677788899999999999987665 5666666555544443333333322 2233333444
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhc
Q 045262 278 ERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEIS 341 (594)
Q Consensus 278 q~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~ 341 (594)
.++--|... ++.|.+. +.+|...|+-|..+-.--..++..-+..++.
T Consensus 594 nk~~~LrKq----------vEnk~K~-------ieeLqqeNk~LKKk~~aE~kq~~~~eikVn~ 640 (786)
T PF05483_consen 594 NKCNNLRKQ----------VENKNKN-------IEELQQENKALKKKITAESKQSNVYEIKVNK 640 (786)
T ss_pred HHHHHHHHH----------HHHHHhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444333332 2333333 3345555555555555555555555555554
No 237
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=74.05 E-value=3.7 Score=44.49 Aligned_cols=37 Identities=35% Similarity=0.397 Sum_probs=30.7
Q ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhc-chhhH
Q 045262 346 GEREALNEMSQRLREENTSLSKEVEKLHADKC-AGVEE 382 (594)
Q Consensus 346 ~ev~~i~ee~~~LR~~NedL~kQVEqLq~dRf-seVEE 382 (594)
++-.++++|...||.+|++|..+||+|.++|. ++|.|
T Consensus 32 ~e~~aLr~EN~~LKkEN~~Lk~eVerLE~e~l~s~V~E 69 (420)
T PF07407_consen 32 DENFALRMENHSLKKENNDLKIEVERLENEMLRSHVCE 69 (420)
T ss_pred hhhhhHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence 34467899999999999999999999999988 55544
No 238
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=73.99 E-value=75 Score=29.39 Aligned_cols=42 Identities=29% Similarity=0.436 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 045262 218 RLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLK 259 (594)
Q Consensus 218 ~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~Lq 259 (594)
..|...+..|+.+...|+.++........++..+..-++.|.
T Consensus 9 ~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~ 50 (140)
T PRK03947 9 EELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELK 50 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444444444444444444444444444444444444443
No 239
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=73.91 E-value=2.6e+02 Score=35.67 Aligned_cols=100 Identities=20% Similarity=0.238 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 045262 169 VKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSEL 248 (594)
Q Consensus 169 I~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~EL 248 (594)
++.|+.+...-..-=...++.|--|.+||+-- .+. +-.+...-..|+.-+.+++.++.+.....+.+.+......+|
T Consensus 187 ld~~kk~rkd~~~evk~~~~~l~~lk~~K~~~-e~~--~l~i~~~~~ki~~~ke~v~e~e~e~~~~~~~i~ei~~~~~el 263 (1294)
T KOG0962|consen 187 LDSLKKLRKDQSQEVKTKKQELEHLKTLKERA-EVL--RLNIHSGQRKIEKSKEEVSELENELGPIEAKIEEIEKSLKEL 263 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH--HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 56677766665554445555555566665432 222 223344455666677777777777777778888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHH
Q 045262 249 EAAKTKIKLLKKKLRTEAEQNRE 271 (594)
Q Consensus 249 E~ar~kir~LqkKl~~~a~q~K~ 271 (594)
+-.-.+++.|+-+.+...++...
T Consensus 264 ~k~~~~~~~l~~e~~~l~~~~~~ 286 (1294)
T KOG0962|consen 264 EKLLKQVKLLDSEHKNLKKQISR 286 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777777777655555544433
No 240
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=73.74 E-value=92 Score=36.54 Aligned_cols=41 Identities=15% Similarity=0.105 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhh
Q 045262 297 TQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQM 337 (594)
Q Consensus 297 ~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~ 337 (594)
++.++..+-..|.+..+|.|..+-.+.--..|..|.+.++.
T Consensus 358 l~~~~~~~p~~e~~~~~L~R~~~~~~~lY~~lL~r~~e~~i 398 (726)
T PRK09841 358 LNKRVSAMPSTQQEVLRLSRDVEAGRAVYLQLLNRQQELSI 398 (726)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445556666666666666666555555555555555543
No 241
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=73.48 E-value=1.9e+02 Score=33.72 Aligned_cols=88 Identities=20% Similarity=0.237 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh------hchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 168 EVKNLKNMVQMLQDREKNLEVELLEYY------GLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADH 241 (594)
Q Consensus 168 EI~~LR~lVeeLqERE~~LE~ELLEyy------~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~ 241 (594)
-.+.|+.-++.+++.-..|..+-+-|. .-|||.. +-.+.++|.--|+.+..+...|.++=.|+.+++++.
T Consensus 160 ~~EaL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~-y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~--- 235 (596)
T KOG4360|consen 160 LLEALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQL-YGDCVKELRDTNTQARSGQEELQSKTKELSRQQEEN--- 235 (596)
T ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 366777777777777666666543331 2233332 223344444444444444444444444444444332
Q ss_pred HhHHHHHHHHHHHHHHHH
Q 045262 242 AKTVSELEAAKTKIKLLK 259 (594)
Q Consensus 242 ~~v~~ELE~ar~kir~Lq 259 (594)
.++..+|.-++.|++.+.
T Consensus 236 skLlsql~d~qkk~k~~~ 253 (596)
T KOG4360|consen 236 SKLLSQLVDLQKKIKYLR 253 (596)
T ss_pred HHHHHHHHhhHHHHHHHH
Confidence 334444444444444443
No 242
>PF14988 DUF4515: Domain of unknown function (DUF4515)
Probab=73.26 E-value=1.1e+02 Score=30.98 Aligned_cols=95 Identities=19% Similarity=0.176 Sum_probs=54.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045262 164 DCEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAK 243 (594)
Q Consensus 164 d~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~ 243 (594)
.....|..|+.....-...-..=..+|...|. ..+.+|+.+|..+..++..+...+..|..=...=..+-.++..
T Consensus 15 e~~~~i~~L~~q~~~~~~~i~~~r~~l~s~y~-----~q~~~Lq~qLlq~~k~~~~l~~eLq~l~~~~~~k~~qe~eI~~ 89 (206)
T PF14988_consen 15 EKEKKIEKLWKQYIQQLEEIQRERQELVSRYA-----KQTSELQDQLLQKEKEQAKLQQELQALKEFRRLKEQQEREIQT 89 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 34567777776644333333333334555554 4467778888877777777777777776544444455555555
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 045262 244 TVSELEAAKTKIKLLKKKLR 263 (594)
Q Consensus 244 v~~ELE~ar~kir~LqkKl~ 263 (594)
+..++..++......-.+++
T Consensus 90 Le~e~~~~~~e~~~~l~~~~ 109 (206)
T PF14988_consen 90 LEEELEKMRAEHAEKLQEAE 109 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55555555544444333333
No 243
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=72.49 E-value=96 Score=33.42 Aligned_cols=13 Identities=38% Similarity=0.652 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHH
Q 045262 227 LQADNRRLEAQVA 239 (594)
Q Consensus 227 LE~En~RLq~qv~ 239 (594)
+|+|=.|.++|++
T Consensus 106 IEEECHRVEAQLA 118 (305)
T PF15290_consen 106 IEEECHRVEAQLA 118 (305)
T ss_pred HHHHHHHHHHHHH
Confidence 4556666666654
No 244
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=72.20 E-value=58 Score=34.21 Aligned_cols=28 Identities=43% Similarity=0.621 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhHh
Q 045262 301 LQRLKVLEAEAEDLRKSNMKLQLENSQL 328 (594)
Q Consensus 301 lq~lkeLE~Ev~ELRr~NkeLQ~EKreL 328 (594)
++.+.+||.|+.|++-..++|.-||.-|
T Consensus 155 ~~eleele~e~ee~~erlk~le~E~s~L 182 (290)
T COG4026 155 LKELEELEAEYEEVQERLKRLEVENSRL 182 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778888888888888888887766
No 245
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=72.10 E-value=74 Score=32.21 Aligned_cols=101 Identities=18% Similarity=0.331 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045262 166 EQEVKNLKNMVQMLQDREKNLEVELLE-YYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKT 244 (594)
Q Consensus 166 e~EI~~LR~lVeeLqERE~~LE~ELLE-yy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v 244 (594)
..+|.++-.+|-.|++|=-+|+-.|-+ |..|.+|.-.-+- +...+..|+....+|...+.....+
T Consensus 71 r~DiarvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~--------------~~~~v~~~~q~~~~l~~K~D~~L~l 136 (189)
T TIGR02132 71 KEDIANVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPA--------------LKKDVTKLKQDIKSLDKKLDKILEL 136 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCch--------------HHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999998 5555544433333 4445555666666666666666655
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHH
Q 045262 245 VSELEAAKTKI-KLLKKKLRTEAEQNREQILAVQERV 280 (594)
Q Consensus 245 ~~ELE~ar~ki-r~LqkKl~~~a~q~K~qi~~Lkq~v 280 (594)
.+--....-++ .-+|++|++..+|..+|++--+..+
T Consensus 137 lE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (189)
T TIGR02132 137 LEGQQKTQDELKETIQKQIKTQGEQLQAQLLEKQEAL 173 (189)
T ss_pred HhcCccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 55111111122 2468889999999888885444433
No 246
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=71.92 E-value=2.9e+02 Score=35.31 Aligned_cols=166 Identities=20% Similarity=0.221 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHH
Q 045262 224 IESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQR 303 (594)
Q Consensus 224 I~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~ 303 (594)
.+.|+++-+|-...+.......+..-.|=..-..-|...+.-.+++-+.|...+|-+.+.+..-.. .+.-+.---++
T Consensus 1544 a~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~---aE~~~~~a~q~ 1620 (1758)
T KOG0994|consen 1544 AENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIRLAQQLLAKVQEETAA---AEKLATSATQQ 1620 (1758)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 455666655544333333322222222222223334444444455555555555555555543211 11112223456
Q ss_pred HHHHHHHHHHHHHHhHHHHH-----HhhHhHHhhhhhhh--hh----------hcchhhh--HHHHHHHHHHHHHHhhHH
Q 045262 304 LKVLEAEAEDLRKSNMKLQL-----ENSQLARRLESTQM--LE----------ISVLEDG--EREALNEMSQRLREENTS 364 (594)
Q Consensus 304 lkeLE~Ev~ELRr~NkeLQ~-----EKreL~~KL~sAe~--~~----------~~~~E~~--ev~~i~ee~~~LR~~Ned 364 (594)
+.+||.-|.+||..-.+--. ++--=++++.+..+ .. ..+++.. ...++++.+..||..-++
T Consensus 1621 ~~eL~~~~e~lk~~~~qns~~A~~a~~~a~sa~~~A~~a~q~~~~lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~ 1700 (1758)
T KOG0994|consen 1621 LGELETRMEELKHKAAQNSAEAKQAEKTAGSAKEQALSAEQGLEILQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEK 1700 (1758)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHH
Confidence 77788777777765433211 11111222222111 00 1111221 124456677778888888
Q ss_pred HHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Q 045262 365 LSKEVEKLHADKCAGVEELVYLKWINACLR 394 (594)
Q Consensus 365 L~kQVEqLq~dRfseVEELVYLRWVNACLR 394 (594)
|.-|- +-+++|..++ |++|++=--|-++
T Consensus 1701 Ll~~a-~~kl~~l~dL-e~~y~~~~~~L~~ 1728 (1758)
T KOG0994|consen 1701 LLGQA-NEKLDRLKDL-ELEYLRNEQALED 1728 (1758)
T ss_pred HHHHH-HHHHHHHHHH-HHHHhhhhHHHHH
Confidence 77664 3456666666 4678765444333
No 247
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=71.48 E-value=1.2e+02 Score=30.86 Aligned_cols=50 Identities=18% Similarity=0.328 Sum_probs=26.0
Q ss_pred hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 045262 199 QETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSEL 248 (594)
Q Consensus 199 QEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~EL 248 (594)
-++.+..+++++..+..++..+..++.-+...|..+..-+.+|-+++.++
T Consensus 7 ~d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~ 56 (207)
T PF05010_consen 7 LDAAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQM 56 (207)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 34444444555444445555555555555555555555555555555543
No 248
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=70.85 E-value=2.7e+02 Score=34.41 Aligned_cols=29 Identities=17% Similarity=0.201 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045262 166 EQEVKNLKNMVQMLQDREKNLEVELLEYY 194 (594)
Q Consensus 166 e~EI~~LR~lVeeLqERE~~LE~ELLEyy 194 (594)
..++..+...+..+......+..++-.+.
T Consensus 529 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 557 (1047)
T PRK10246 529 QSRLDALEKEVKKLGEEGAALRGQLDALT 557 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777777777777776666655544333
No 249
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=70.32 E-value=2e+02 Score=32.68 Aligned_cols=39 Identities=28% Similarity=0.346 Sum_probs=28.1
Q ss_pred hhHHHHHHHHHHhhhh----------------cchh--------hHHHHHHHHHHHHHHHHhh
Q 045262 361 ENTSLSKEVEKLHADK----------------CAGV--------EELVYLKWINACLRYELRN 399 (594)
Q Consensus 361 ~NedL~kQVEqLq~dR----------------fseV--------EELVYLRWVNACLR~ELrn 399 (594)
-|.+|+.+|-+|+.== +.+. -|+-||+--=.||+.||.-
T Consensus 475 LnnRLaaEItrLRtlltgdGgGtGsplaqgkdayELEVLLRVKEsEiQYLKqEissLkDELQt 537 (593)
T KOG4807|consen 475 LNNRLAAEITRLRTLLTGDGGGTGSPLAQGKDAYELEVLLRVKESEIQYLKQEISSLKDELQT 537 (593)
T ss_pred HhhHHHHHHHHHHHHhccCCCCCCCccccCcchhhHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3678888888887421 1122 3788999999999999943
No 250
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=70.17 E-value=2e+02 Score=32.67 Aligned_cols=65 Identities=18% Similarity=0.198 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 172 LKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHA 242 (594)
Q Consensus 172 LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~ 242 (594)
|-++--++.+|=..|+.+|..+| ..+-.+-.|+.+..++.+-+..++...|.+.++|+++..+..
T Consensus 4 ~~s~~s~~dqr~~~~~~~laq~~------k~~s~~~aq~~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~ 68 (459)
T KOG0288|consen 4 LYSQKSENDQRLIDLNTELAQCE------KAQSRLSAQLVILRAESRAIKAKLQEKELELNRLQEENTQLN 68 (459)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566677777777766554 456666677777788888888999889999999888777654
No 251
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=69.71 E-value=63 Score=34.15 Aligned_cols=58 Identities=26% Similarity=0.327 Sum_probs=41.9
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHh
Q 045262 260 KKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQL 328 (594)
Q Consensus 260 kKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL 328 (594)
+++....-.-|.+-..||.+|+.--+.. +|.-++.+||.+|++|--.|..||.|+.-|
T Consensus 59 ~RL~HLS~EEK~~RrKLKNRVAAQtaRD-----------rKKaRm~eme~~i~dL~een~~L~~en~~L 116 (292)
T KOG4005|consen 59 RRLDHLSWEEKVQRRKLKNRVAAQTARD-----------RKKARMEEMEYEIKDLTEENEILQNENDSL 116 (292)
T ss_pred HhhcccCHHHHHHHHHHHHHHHHhhhhh-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555667788888888865553 455678888888888888888888877665
No 252
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=69.68 E-value=1.4e+02 Score=30.60 Aligned_cols=35 Identities=17% Similarity=0.232 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhh
Q 045262 303 RLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLE 339 (594)
Q Consensus 303 ~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~ 339 (594)
.+++-+.=+.|||..+ +...+.....-|..|+...
T Consensus 128 ~l~ea~~mL~emr~r~--f~~~~~~Ae~El~~A~~LL 162 (264)
T PF06008_consen 128 ALAEAQRMLEEMRKRD--FTPQRQNAEDELKEAEDLL 162 (264)
T ss_pred HHHHHHHHHHHHHhcc--chhHHHHHHHHHHHHHHHH
Confidence 4666777777888775 6666666666777777644
No 253
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=69.24 E-value=71 Score=28.08 Aligned_cols=46 Identities=24% Similarity=0.328 Sum_probs=32.5
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 045262 204 MELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELE 249 (594)
Q Consensus 204 ~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE 249 (594)
..||.-+.-.-..|..|.++|+-|-+.|..|..++.+....++.|+
T Consensus 7 ekLE~KiqqAvdTI~LLQmEieELKEknn~l~~e~q~~q~~reaL~ 52 (79)
T COG3074 7 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREALE 52 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHH
Confidence 3455555555567778888888888888888888776666555554
No 254
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=69.16 E-value=36 Score=39.11 Aligned_cols=64 Identities=19% Similarity=0.250 Sum_probs=34.9
Q ss_pred hhhHHHHHHHHHHHHH--H--HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 045262 215 MEGRLLNLKIESLQAD--N--RRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQE 278 (594)
Q Consensus 215 ~Ei~~L~~kI~sLE~E--n--~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq 278 (594)
.+++.+..+|+.|+.. + .-++.-..+...++.|+...+.+++-+++.++.+.++.++++..|++
T Consensus 191 ~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~ 258 (555)
T TIGR03545 191 QDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKK 258 (555)
T ss_pred hhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 3455555555555553 1 12334444555555666666666666666666666666665554443
No 255
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=69.08 E-value=59 Score=27.75 Aligned_cols=51 Identities=18% Similarity=0.137 Sum_probs=28.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 215 MEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQ 268 (594)
Q Consensus 215 ~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q 268 (594)
..++.+..+++..+.+++.|.. +-..+...|..|...|..|+.++....++
T Consensus 12 ~rLd~~~rk~~~~~~~~k~L~~---ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 12 NRLDSLTRKNSVHEIENKRLRR---ERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677777777776664 33444455555555555555554444433
No 256
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=68.40 E-value=1.4e+02 Score=30.05 Aligned_cols=26 Identities=23% Similarity=0.350 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhH
Q 045262 302 QRLKVLEAEAEDLRKSNMKLQLENSQ 327 (594)
Q Consensus 302 q~lkeLE~Ev~ELRr~NkeLQ~EKre 327 (594)
..+.+||..+.+|++....+-.+|..
T Consensus 131 ~~i~~Le~ki~el~~~~~~~~~~ke~ 156 (190)
T PF05266_consen 131 SEIKELEMKILELQRQAAKLKEKKEA 156 (190)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666665554444444433
No 257
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=68.06 E-value=47 Score=36.07 Aligned_cols=76 Identities=18% Similarity=0.222 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHH----------HHHHHHHHHhHHH
Q 045262 252 KTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLE----------AEAEDLRKSNMKL 321 (594)
Q Consensus 252 r~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE----------~Ev~ELRr~NkeL 321 (594)
.++|-+|.++|..-.+.+|===-+-+|+|+. +|+=.|.+++|| .-|..-+|...+|
T Consensus 6 QN~N~EL~kQiEIcqEENkiLdK~hRQKV~E--------------VEKLsqTi~ELEEaiLagGaaaNavrdYqrq~~el 71 (351)
T PF07058_consen 6 QNQNQELMKQIEICQEENKILDKMHRQKVLE--------------VEKLSQTIRELEEAILAGGAAANAVRDYQRQVQEL 71 (351)
T ss_pred hhhcHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 3455555555555444443222233444433 445556677777 5678899999999
Q ss_pred HHHhhHhHHhhhhhhhhhhc
Q 045262 322 QLENSQLARRLESTQMLEIS 341 (594)
Q Consensus 322 Q~EKreL~~KL~sAe~~~~~ 341 (594)
+.||+.|-+-|.-|.-.+|.
T Consensus 72 neEkrtLeRELARaKV~aNR 91 (351)
T PF07058_consen 72 NEEKRTLERELARAKVSANR 91 (351)
T ss_pred HHHHHHHHHHHHHhhhhhhh
Confidence 99999999999888877653
No 258
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=67.92 E-value=1.4e+02 Score=34.03 Aligned_cols=43 Identities=21% Similarity=0.260 Sum_probs=30.7
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhHHHHHH-hhHhHHhhhhhh
Q 045262 294 DPDTQSRLQRLKVLEAEAEDLRKSNMKLQLE-NSQLARRLESTQ 336 (594)
Q Consensus 294 d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~E-KreL~~KL~sAe 336 (594)
-..+++=||..-++|+..-+.+|.|.+-|+. -.|-+.||.--+
T Consensus 334 P~aLQ~wLq~T~E~E~q~~~kkrqnaekql~~Ake~~eklkKKr 377 (575)
T KOG4403|consen 334 PLALQKWLQLTHEVEVQYYNKKRQNAEKQLKEAKEMAEKLKKKR 377 (575)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhh
Confidence 3567888999999999999999998877754 234444544433
No 259
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=67.78 E-value=2.7e+02 Score=33.28 Aligned_cols=58 Identities=22% Similarity=0.164 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 045262 176 VQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVA 239 (594)
Q Consensus 176 VeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~ 239 (594)
=.+++.|-..|..+.- .|-..+.+|+++++.-+...+.|..+++.+...-+.|...+.
T Consensus 560 r~ei~~rv~~Lk~~~e------~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~ 617 (717)
T PF10168_consen 560 REEIQRRVKLLKQQKE------QQLKELQELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVD 617 (717)
T ss_pred HHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555554444432 455556666666555555556666666665555444444443
No 260
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=67.67 E-value=2.1e+02 Score=31.99 Aligned_cols=70 Identities=14% Similarity=0.259 Sum_probs=47.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 045262 217 GRLLNLKIESLQADNRRLEAQVA-DHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQ 286 (594)
Q Consensus 217 i~~L~~kI~sLE~En~RLq~qv~-e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~ 286 (594)
+..+......|+....+|++++. ++.-...-|+..|-+...|..+|.-..+-...+|..|||.++.++++
T Consensus 221 l~eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK 291 (395)
T PF10267_consen 221 LREIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEK 291 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 33344445555555556665333 55566667777788888888888877777778888888888777654
No 261
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp []. Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
Probab=67.18 E-value=2e+02 Score=32.76 Aligned_cols=48 Identities=19% Similarity=0.340 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHhHHHHH
Q 045262 201 TIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQV-ADHAKTVSEL 248 (594)
Q Consensus 201 a~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv-~e~~~v~~EL 248 (594)
..+-+||+.+.+|.+|.+|+..+..--.-|-++|+.-+ +-..++.+|.
T Consensus 350 ~~~eeLESIVRiKqAEA~MFQ~kAdEARrEAE~LqrI~~aK~~k~EEEY 398 (446)
T PF07227_consen 350 PQIEELESIVRIKQAEAKMFQLKADEARREAEGLQRIALAKSEKIEEEY 398 (446)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 45889999999999999999999999888888888543 3334444444
No 262
>KOG2398 consensus Predicted proline-serine-threonine phosphatase-interacting protein (PSTPIP) [Cell cycle control, cell division, chromosome partitioning]
Probab=67.02 E-value=2.6e+02 Score=32.88 Aligned_cols=30 Identities=30% Similarity=0.286 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 045262 255 IKLLKKKLRTEAEQNREQILAVQERVTKLQ 284 (594)
Q Consensus 255 ir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq 284 (594)
.++++-..+.-+.+.|.+..+....|.++.
T Consensus 71 ~~~i~~~~k~~~~~~k~~k~~~~~~v~~~~ 100 (611)
T KOG2398|consen 71 QDLIKDVAKYYAEQLKTRKKSKEEGVEKLK 100 (611)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 334444444444444444444444444433
No 263
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=66.64 E-value=40 Score=35.35 Aligned_cols=72 Identities=26% Similarity=0.282 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhcchhh
Q 045262 307 LEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHADKCAGVE 381 (594)
Q Consensus 307 LE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQVEqLq~dRfseVE 381 (594)
|---..|+|-...++|.||.+|...|.--|+..+.+. +..+.+.-|.+.|-+.-..|..+|..|++ ||++.+
T Consensus 133 ~ke~~ee~kekl~E~~~EkeeL~~eleele~e~ee~~--erlk~le~E~s~LeE~~~~l~~ev~~L~~-r~~ELe 204 (290)
T COG4026 133 LKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQ--ERLKRLEVENSRLEEMLKKLPGEVYDLKK-RWDELE 204 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhchhHHHHHHH-HHHHhc
Confidence 3334455666666666677777666666666554332 22344455555665656666677777764 455544
No 264
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=66.63 E-value=2e+02 Score=31.29 Aligned_cols=166 Identities=19% Similarity=0.258 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHh
Q 045262 249 EAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQL 328 (594)
Q Consensus 249 E~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL 328 (594)
.++|.+---||-|+..+....+.....|-|+++.-+.+-.. -..++-.-...+++==.-.+-+.|-..+-|.++-++
T Consensus 122 qr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~ns---Le~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~ 198 (305)
T PF14915_consen 122 QRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNS---LEIELHHTRDALREKTLALESVQRDLSQTQCQIKEI 198 (305)
T ss_pred HHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455557788999999999999899999999987765210 001111111222221122233455556666666666
Q ss_pred HHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHH--HHhhcCCCCCc
Q 045262 329 ARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHADKCAGVEELVYLKWINACLRY--ELRNYQPPAGK 406 (594)
Q Consensus 329 ~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQVEqLq~dRfseVEELVYLRWVNACLR~--ELrn~q~p~gk 406 (594)
--.....+...+..+-. -..+.+....|-.+|-=|-.|++..|+- ++..|-+- ||.==++ =+.+.++..++
T Consensus 199 e~m~qne~~kv~k~~~K--qes~eERL~QlqsEN~LLrQQLddA~~K--~~~kek~V---iniQ~~f~d~~~~L~ae~ek 271 (305)
T PF14915_consen 199 EHMYQNEQDKVNKYIGK--QESLEERLSQLQSENMLLRQQLDDAHNK--ADNKEKTV---INIQDQFQDIVKKLQAESEK 271 (305)
T ss_pred HHHHHhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH---hhHHHHHHHHHHHHHHHHHH
Confidence 66666666555422110 1234555677777777777788877753 22333111 2222111 23455555555
Q ss_pred chhhhccccCCcCcHHHHHHHHHHhhc
Q 045262 407 TVARDLSKTLSPNSEEKAKQLILEYAH 433 (594)
Q Consensus 407 ~sA~DLsKslSP~SqekAKqLmLeYa~ 433 (594)
-+ | -=+++.|.||-+|.+
T Consensus 272 q~---l------llEErNKeL~ne~n~ 289 (305)
T PF14915_consen 272 QV---L------LLEERNKELINECNH 289 (305)
T ss_pred HH---H------HHHHHhHHHHHHHHH
Confidence 32 1 147899999999864
No 265
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=66.63 E-value=25 Score=32.23 Aligned_cols=48 Identities=23% Similarity=0.232 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 045262 202 IVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELE 249 (594)
Q Consensus 202 ~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE 249 (594)
.+..|+.+|..-..+|..|+..|..|-+||.+|+-+-..+.....+++
T Consensus 9 ~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~ 56 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELE 56 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 478889999999999999999999999999999877666665555544
No 266
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=66.04 E-value=3e+02 Score=33.10 Aligned_cols=37 Identities=19% Similarity=0.185 Sum_probs=19.6
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH
Q 045262 150 DVENPRPCRGSEKDDCEQEVKNLKNMVQMLQDREKNL 186 (594)
Q Consensus 150 ~~~~~~a~~~~e~~d~e~EI~~LR~lVeeLqERE~~L 186 (594)
...+|.-+.++...+..++-....++.-.++..=..|
T Consensus 38 ~g~sP~~~q~s~~~~~~s~n~~~~s~~~~~~~~l~~L 74 (716)
T KOG4593|consen 38 PGSSPNLYQPSMQSEERSENITSKSLLMQLEDELMQL 74 (716)
T ss_pred CCCCccccCcCCCchhhhccchhHHHHHHHHHHHHHH
Confidence 3445666666555556666555555554444433333
No 267
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=66.02 E-value=58 Score=33.14 Aligned_cols=23 Identities=22% Similarity=0.391 Sum_probs=18.0
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHH
Q 045262 264 TEAEQNREQILAVQERVTKLQEQ 286 (594)
Q Consensus 264 ~~a~q~K~qi~~Lkq~v~~Lq~~ 286 (594)
...+-.++.|..|++||..|+.-
T Consensus 160 ~~l~~v~~Dl~~ie~QV~~Le~~ 182 (195)
T PF12761_consen 160 KNLKSVREDLDTIEEQVDGLESH 182 (195)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHH
Confidence 44566688899999999998854
No 268
>PTZ00446 vacuolar sorting protein SNF7-like; Provisional
Probab=66.01 E-value=1.6e+02 Score=29.88 Aligned_cols=26 Identities=15% Similarity=0.250 Sum_probs=20.0
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHH
Q 045262 262 LRTEAEQNREQILAVQERVTKLQEQA 287 (594)
Q Consensus 262 l~~~a~q~K~qi~~Lkq~v~~Lq~~E 287 (594)
......++-.++..|.+++..++.-.
T Consensus 79 ~E~ql~q~~~ql~nLEq~~~~iE~a~ 104 (191)
T PTZ00446 79 YEQEIENILNNRLTLEDNMINLENMH 104 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566778889999999999888653
No 269
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=65.90 E-value=2.4e+02 Score=31.98 Aligned_cols=144 Identities=18% Similarity=0.227 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHH
Q 045262 223 KIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQ 302 (594)
Q Consensus 223 kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq 302 (594)
.+..+.++.++|+..+.....-..+|++-.--+-.-++.++.-+.|.|-+.+-|+-+-..++-++ .++..+-+
T Consensus 138 ~lar~t~Q~q~lqtrl~~l~~qr~ql~aq~qsl~a~~k~LQ~s~~Qlk~~~~~L~~r~~~ieQ~~-------~~la~r~~ 210 (499)
T COG4372 138 ELARLTKQAQDLQTRLKTLAEQRRQLEAQAQSLQASQKQLQASATQLKSQVLDLKLRSAQIEQEA-------QNLATRAN 210 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence 33444444455554444444444444333333333345555555666665555555544443332 33445555
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q 045262 303 RLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHAD 375 (594)
Q Consensus 303 ~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQVEqLq~d 375 (594)
.+..++-|..-+-...-+++.+...+..+.+---..++.-.|. +.+-......|-.+-..|-.+|++|+.-
T Consensus 211 a~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~--I~~re~~lq~lEt~q~~leqeva~le~y 281 (499)
T COG4372 211 AAQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQ--IRERERQLQRLETAQARLEQEVAQLEAY 281 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555554444444444444444433332222222211111 1111122344445555566666666543
No 270
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=65.75 E-value=1.9e+02 Score=30.70 Aligned_cols=34 Identities=29% Similarity=0.352 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhhhcchhhHHHHHHH
Q 045262 351 LNEMSQRLREENTSLSKEVEKLHADKCAGVEELVYLKW 388 (594)
Q Consensus 351 i~ee~~~LR~~NedL~kQVEqLq~dRfseVEELVYLRW 388 (594)
+..++...|...+.|..+|-+|+ ++|++|---+|
T Consensus 191 m~kei~~~re~i~el~e~I~~L~----~eV~~L~~~~~ 224 (258)
T PF15397_consen 191 MQKEIVQFREEIDELEEEIPQLR----AEVEQLQAQAQ 224 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHhhc
Confidence 46677778888888888888887 46888777666
No 271
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=65.54 E-value=73 Score=27.21 Aligned_cols=33 Identities=15% Similarity=0.246 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 045262 201 TIVMELQNRLKLNNMEGRLLNLKIESLQADNRR 233 (594)
Q Consensus 201 a~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~R 233 (594)
+.+..|+++|..-+-.+.........|..|+..
T Consensus 5 a~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~ 37 (69)
T PF14197_consen 5 AEIATLRNRLDSLTRKNSVHEIENKRLRRERDS 37 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555544
No 272
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=65.53 E-value=46 Score=35.72 Aligned_cols=53 Identities=11% Similarity=0.193 Sum_probs=27.2
Q ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 045262 211 KLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQ 284 (594)
Q Consensus 211 ~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq 284 (594)
.....||+.|+..+..|+++-= -.++..|.+||+ .+.++.+|.-|||-|..+.
T Consensus 85 ~dRetEI~eLksQL~RMrEDWI-----EEECHRVEAQLA----------------LKEARkEIkQLkQvieTmr 137 (305)
T PF15290_consen 85 HDRETEIDELKSQLARMREDWI-----EEECHRVEAQLA----------------LKEARKEIKQLKQVIETMR 137 (305)
T ss_pred HhhHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555544410 124677777775 2334445555556555554
No 273
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=65.11 E-value=1.9e+02 Score=33.65 Aligned_cols=46 Identities=24% Similarity=0.201 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhh
Q 045262 295 PDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEI 340 (594)
Q Consensus 295 ~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~ 340 (594)
..+...+..+...+....+|....+.|+.+--+.+.+|......+.
T Consensus 328 ~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A 373 (557)
T COG0497 328 DKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALSAIRKKAA 373 (557)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666667777777777776666666666655544
No 274
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=64.94 E-value=62 Score=27.25 Aligned_cols=36 Identities=25% Similarity=0.333 Sum_probs=22.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045262 234 LEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQN 269 (594)
Q Consensus 234 Lq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~ 269 (594)
|++++.....+.+||-.+|+-+-.+..+++---.++
T Consensus 6 L~~EirakQ~~~eEL~kvk~~n~~~e~kLqeaE~rn 41 (61)
T PF08826_consen 6 LEAEIRAKQAIQEELTKVKSANLAFESKLQEAEKRN 41 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555666666677777766666666666665443333
No 275
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=64.87 E-value=39 Score=36.76 Aligned_cols=26 Identities=35% Similarity=0.342 Sum_probs=17.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 241 HAKTVSELEAAKTKIKLLKKKLRTEA 266 (594)
Q Consensus 241 ~~~v~~ELE~ar~kir~LqkKl~~~a 266 (594)
|.+-+.=|-.=|+|||.||++|....
T Consensus 182 ~~KF~~vLNeKK~KIR~lq~~L~~~~ 207 (342)
T PF06632_consen 182 YAKFVLVLNEKKAKIRELQRLLASAK 207 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhh
Confidence 33444445667889999998886544
No 276
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=64.44 E-value=1.8e+02 Score=30.00 Aligned_cols=122 Identities=16% Similarity=0.216 Sum_probs=63.8
Q ss_pred HHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 189 ELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQ 268 (594)
Q Consensus 189 ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q 268 (594)
.+|+|| +++.+..+.++...+.--.+.-..|.++++.++....+++.++..-...-. ...+++
T Consensus 27 ~~l~Q~-ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g~----------------E~LAr~ 89 (225)
T COG1842 27 KMLEQA-IRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAGN----------------EDLARE 89 (225)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC----------------HHHHHH
Confidence 455554 356666677777777777777777777777777777777755433221111 222333
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhh
Q 045262 269 NREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQM 337 (594)
Q Consensus 269 ~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~ 337 (594)
.=+.+..|...+..++..-. .=-..+..|+..+..|.....+|...+..|..+..+|++
T Consensus 90 al~~~~~le~~~~~~~~~~~----------~~~~~~~~l~~~~~~Le~Ki~e~~~~~~~l~ar~~~akA 148 (225)
T COG1842 90 ALEEKQSLEDLAKALEAELQ----------QAEEQVEKLKKQLAALEQKIAELRAKKEALKARKAAAKA 148 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444433211 111223445555555555555555566666666666655
No 277
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=64.43 E-value=2.8e+02 Score=32.19 Aligned_cols=42 Identities=14% Similarity=0.057 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhh
Q 045262 296 DTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQM 337 (594)
Q Consensus 296 E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~ 337 (594)
.+++-.+.+.+++.++.++++....++.+-..+..++...+.
T Consensus 422 ~i~~l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 463 (650)
T TIGR03185 422 QIAQLLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRK 463 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444445555555544444444444444444444443
No 278
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=64.16 E-value=11 Score=37.43 Aligned_cols=35 Identities=29% Similarity=0.322 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhhhcchhhHHHH
Q 045262 351 LNEMSQRLREENTSLSKEVEKLHADKCAGVEELVY 385 (594)
Q Consensus 351 i~ee~~~LR~~NedL~kQVEqLq~dRfseVEELVY 385 (594)
+++.....+.+|+.|...+..|..++-.-.+||-.
T Consensus 86 LReQLEq~~~~N~~L~~dl~klt~~~~~l~~eL~~ 120 (182)
T PF15035_consen 86 LREQLEQARKANEALQEDLQKLTQDWERLRDELEQ 120 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777788888999999999998888876666653
No 279
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=63.77 E-value=1.7e+02 Score=33.85 Aligned_cols=41 Identities=10% Similarity=0.205 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHH
Q 045262 270 REQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAED 313 (594)
Q Consensus 270 K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~E 313 (594)
+.++..++++|..|+... .++-.++.+..+.+.+|=.++..
T Consensus 190 ~~~~~~yk~~v~~i~~~~---ik~p~~i~~~~~e~d~lk~e~~~ 230 (555)
T TIGR03545 190 KQDLEEYKKRLEAIKKKD---IKNPLELQKIKEEFDKLKKEGKA 230 (555)
T ss_pred chhHHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHHHHHHHH
Confidence 556666677776666542 23334455554444444444444
No 280
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=63.74 E-value=2.7e+02 Score=31.84 Aligned_cols=139 Identities=26% Similarity=0.282 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhHHH-------HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045262 172 LKNMVQMLQDREKNLEVELLEYYGLKEQETI-------VMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKT 244 (594)
Q Consensus 172 LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~-------v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v 244 (594)
|-+-...|+..+..||.-|+. |||-- +..|||.--.|..-++-| +++..+-||.-=|+|-+-..++
T Consensus 134 Lsrkl~qLr~ek~~lEq~leq-----eqef~vnKlm~ki~Klen~t~~kq~~leQL--Rre~V~lentlEQEqEalvN~L 206 (552)
T KOG2129|consen 134 LSRKLKQLRHEKLPLEQLLEQ-----EQEFFVNKLMNKIRKLENKTLLKQNTLEQL--RREAVQLENTLEQEQEALVNSL 206 (552)
T ss_pred hhHHHHHHHhhhccHHHHHHH-----HHHHHHHHHHHHHHHhhhhhHHhhhhHHHH--HHHHHHHhhHHHHHHHHHHHHH
Confidence 445556666666666554432 33322 344454444444444433 3445555666666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHH--------------------HHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHH
Q 045262 245 VSELEAAKTKIKLLKKKLRTE--------------------AEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRL 304 (594)
Q Consensus 245 ~~ELE~ar~kir~LqkKl~~~--------------------a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~l 304 (594)
-+.+......-+-||+|+... +.--+.+|..|+-.|.+|...=..+- -+...|+..
T Consensus 207 wKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aq---k~~~ek~~q- 282 (552)
T KOG2129|consen 207 WKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQ---KSYQEKLMQ- 282 (552)
T ss_pred HHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH-
Confidence 676666667778888887522 22336677778888877776421111 122334444
Q ss_pred HHHHHHHHHHHHHhHHHHH
Q 045262 305 KVLEAEAEDLRKSNMKLQL 323 (594)
Q Consensus 305 keLE~Ev~ELRr~NkeLQ~ 323 (594)
+-.|-+.+|-.|.+||.
T Consensus 283 --y~~Ee~~~reen~rlQr 299 (552)
T KOG2129|consen 283 --YRAEEVDHREENERLQR 299 (552)
T ss_pred --HHHHHhhHHHHHHHHHH
Confidence 44555667777777774
No 281
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A).
Probab=63.73 E-value=1.8e+02 Score=29.88 Aligned_cols=87 Identities=20% Similarity=0.200 Sum_probs=54.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045262 164 DCEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAK 243 (594)
Q Consensus 164 d~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~ 243 (594)
++..++..++..+..++..-..++.. +..++.++.....++......+...+.+-+|.+..+.....
T Consensus 77 ~~~~~l~~a~a~l~~~~~~~~~~~~~-------------~~~~~~~i~~~~~~~~~a~~~l~~a~~~~~r~~~L~~~g~i 143 (334)
T TIGR00998 77 NAELALAKAEANLAALVRQTKQLEIT-------------VQQLQAKVESLKIKLEQAREKLLQAELDLRRRVPLFKKGLI 143 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHCCCc
Confidence 34566777776666665544444433 22344444444555666666666777777787777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 045262 244 TVSELEAAKTKIKLLKKKLR 263 (594)
Q Consensus 244 v~~ELE~ar~kir~LqkKl~ 263 (594)
...+++.++......+.+++
T Consensus 144 s~~~~~~a~~~~~~a~~~l~ 163 (334)
T TIGR00998 144 SREELDHARKALLSAKAALN 163 (334)
T ss_pred CHHHHHHHHHHHHHHHHHHH
Confidence 77778777777666665554
No 282
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=63.57 E-value=1.8e+02 Score=29.64 Aligned_cols=132 Identities=20% Similarity=0.227 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 045262 168 EVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSE 247 (594)
Q Consensus 168 EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~E 247 (594)
.++.+...++....-+...+.+.-++..= -..-..+++.+..+++.|+..|..|+.++.....-..
T Consensus 22 ~~~~~~~~~~~~~~~~~~sQ~~id~~~~e-------------~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~- 87 (251)
T PF11932_consen 22 TLDQAQQVQQQWVQAAQQSQKRIDQWDDE-------------KQELLAEYRQLEREIENLEVYNEQLERQVASQEQELA- 87 (251)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 34555555555555555555444333321 1112246666777777777777777766655443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHH--------HHHHHHhH
Q 045262 248 LEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEA--------EDLRKSNM 319 (594)
Q Consensus 248 LE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev--------~ELRr~Nk 319 (594)
.|+.++.....-.++=.-.+.+++..|+..= ....-+-.+.+..++..|...+ +-+|+...
T Consensus 88 ---------~L~~qi~~~~~~~~~l~p~m~~m~~~L~~~v--~~d~Pf~~~eR~~Rl~~L~~~l~~~dv~~~ek~r~vle 156 (251)
T PF11932_consen 88 ---------SLEQQIEQIEETRQELVPLMEQMIDELEQFV--ELDLPFLLEERQERLARLRAMLDDADVSLAEKFRRVLE 156 (251)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCCChHHHHHHHHHHHHhhhccCCCHHHHHHHHHH
Confidence 3344444333333333345666666666431 1122344555666666665433 34555555
Q ss_pred HHHHH
Q 045262 320 KLQLE 324 (594)
Q Consensus 320 eLQ~E 324 (594)
-+|.|
T Consensus 157 a~~~E 161 (251)
T PF11932_consen 157 AYQIE 161 (251)
T ss_pred HHHHH
Confidence 55554
No 283
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=63.52 E-value=3.9e+02 Score=33.68 Aligned_cols=174 Identities=15% Similarity=0.105 Sum_probs=75.7
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhc-h---hhHHHHHHHHHHHHh--------hhhhhHHHHHHHH
Q 045262 162 KDDCEQEVKNLKNMVQMLQDREKNLEVELLE----YYGL-K---EQETIVMELQNRLKL--------NNMEGRLLNLKIE 225 (594)
Q Consensus 162 ~~d~e~EI~~LR~lVeeLqERE~~LE~ELLE----yy~L-K---EQEa~v~ELe~~L~~--------k~~Ei~~L~~kI~ 225 (594)
-.+.++.+..-...+.++++.......++-+ .--+ + +=-..+.+++++|.. ...+...|..+..
T Consensus 104 ~~~Leq~l~~~~~~L~~~q~~l~~~~~~~~~~~~~l~~~pq~~~~~~~~l~~i~~~L~~~~~~~~~l~~a~~~~lqae~~ 183 (1109)
T PRK10929 104 TDALEQEILQVSSQLLEKSRQAQQEQDRAREISDSLSQLPQQQTEARRQLNEIERRLQTLGTPNTPLAQAQLTALQAESA 183 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhchhhHHHHHHHHHHHHHHHhCCCCCCCcccHHHHHHHHHHHH
Confidence 3566777777777777777777776666622 1000 0 011224455555543 1333444455555
Q ss_pred HHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHhhcCChhHHHH
Q 045262 226 SLQADNRRLEAQVADHAK----TVSELEAAKTKIKLLKKKLRTEAEQNREQ-ILAVQERVTKLQEQAHKAAAIDPDTQSR 300 (594)
Q Consensus 226 sLE~En~RLq~qv~e~~~----v~~ELE~ar~kir~LqkKl~~~a~q~K~q-i~~Lkq~v~~Lq~~E~e~~~~d~E~ekK 300 (594)
.++.++.-++.++..... .+.+.+.++.++..++.+++...+.--++ ...-++.+...+....+....++.+.+-
T Consensus 184 ~l~~~~~~l~~~l~s~~~~~~L~~~q~dl~~~~~~~l~~~~~~Lq~~in~kR~~~se~~~~~~~~~~~~~~~~~~~i~~~ 263 (1109)
T PRK10929 184 ALKALVDELELAQLSANNRQELARLRSELAKKRSQQLDAYLQALRNQLNSQRQREAERALESTELLAEQSGDLPKSIVAQ 263 (1109)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccCChHHHHH
Confidence 555555555533332111 12233344445554444444333322111 1111112222222111122233334444
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhh
Q 045262 301 LQRLKVLEAEAEDLRKSNMKLQLENSQLARRLEST 335 (594)
Q Consensus 301 lq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sA 335 (594)
++.-++|=.+....-.....|..++......|+..
T Consensus 264 ~~~N~~Ls~~L~~~t~~~n~l~~~~~~~~~~l~~~ 298 (1109)
T PRK10929 264 FKINRELSQALNQQAQRMDLIASQQRQAASQTLQV 298 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555555555544444433
No 284
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=63.45 E-value=2.3e+02 Score=30.89 Aligned_cols=204 Identities=20% Similarity=0.270 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh----hchhhHHHHHHHHHHHHhhhh--h---hHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 170 KNLKNMVQMLQDREKNLEVELLEYY----GLKEQETIVMELQNRLKLNNM--E---GRLLNLKIESLQADNRRLEAQVAD 240 (594)
Q Consensus 170 ~~LR~lVeeLqERE~~LE~ELLEyy----~LKEQEa~v~ELe~~L~~k~~--E---i~~L~~kI~sLE~En~RLq~qv~e 240 (594)
+.|+..|.+|+..=..|..+|.-|. .|.+.-..+..-==.+.++.. | .-.|-++|..|..|+..|--.+..
T Consensus 23 ~~l~~~~~sL~qen~~Lk~El~~ek~~~~~L~~e~~~lr~~sv~~~~~aEqEEE~isN~LlKkl~~l~keKe~L~~~~e~ 102 (310)
T PF09755_consen 23 EQLRKRIESLQQENRVLKRELETEKARCKHLQEENRALREASVRIQAKAEQEEEFISNTLLKKLQQLKKEKETLALKYEQ 102 (310)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788888888887777777764443 333322222221111111110 0 234677788888887777422211
Q ss_pred -H----HhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHH----HHHHHHHHHHH--
Q 045262 241 -H----AKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQ----SRLQRLKVLEA-- 309 (594)
Q Consensus 241 -~----~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~e----kKlq~lkeLE~-- 309 (594)
- ..+...|...+..--.|..++..+.+. .+..|..++..|..+.. ....+++ .|..--..||.
T Consensus 103 EEE~ltn~L~rkl~qLr~EK~~lE~~Le~EqE~---~V~kL~k~i~~Le~e~~---~~q~~le~Lr~EKVdlEn~LE~EQ 176 (310)
T PF09755_consen 103 EEEFLTNDLSRKLNQLRQEKVELENQLEQEQEY---LVNKLQKKIERLEKEKS---AKQEELERLRREKVDLENTLEQEQ 176 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHHhHHHHHHHHH
Confidence 1 122222222222222333333222111 13333444444432210 0000011 01111122333
Q ss_pred --HHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcch-------hhhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhcch
Q 045262 310 --EAEDLRKSNMKLQLENSQLARRLESTQMLEISVL-------EDGEREALNEMSQRLREENTSLSKEVEKLHADKCAG 379 (594)
Q Consensus 310 --Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~-------E~~ev~~i~ee~~~LR~~NedL~kQVEqLq~dRfse 379 (594)
=|.-|-.....|..+|+-|-.+|+.+=+...++. ..+.+..+-..+..||.+-.+|..|+-.-+..+...
T Consensus 177 E~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k 255 (310)
T PF09755_consen 177 EALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVSEENDTAERLSSHIRSLRQEVSRLRQQLAASQQEHSEK 255 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556778888999999999999997643332221 223345555667788887888888888887777544
No 285
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=63.41 E-value=2.7e+02 Score=31.82 Aligned_cols=25 Identities=8% Similarity=0.093 Sum_probs=10.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhH
Q 045262 295 PDTQSRLQRLKVLEAEAEDLRKSNM 319 (594)
Q Consensus 295 ~E~ekKlq~lkeLE~Ev~ELRr~Nk 319 (594)
.+++.+.+.+...+.++.++.....
T Consensus 104 ~~Le~ke~~L~~re~eLee~~~e~~ 128 (514)
T TIGR03319 104 ENLEKKEKELSNKEKNLDEKEEELE 128 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444443333
No 286
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=63.35 E-value=3.3e+02 Score=32.77 Aligned_cols=98 Identities=22% Similarity=0.209 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHhHHHHHH-------hhHhHHhhhhhhhhhhcch-hhhHHHHHHHHHHHHHHhhHHHHHHHHH-----
Q 045262 305 KVLEAEAEDLRKSNMKLQLE-------NSQLARRLESTQMLEISVL-EDGEREALNEMSQRLREENTSLSKEVEK----- 371 (594)
Q Consensus 305 keLE~Ev~ELRr~NkeLQ~E-------KreL~~KL~sAe~~~~~~~-E~~ev~~i~ee~~~LR~~NedL~kQVEq----- 371 (594)
.++|..+.-|...+.+|=+= .+-++.|+..|+....... --+.+..+.-|...||.+-++|.-+|..
T Consensus 422 a~ve~a~aRL~sL~~RlSyAvrrv~tiqGL~Ark~Alaqlrqe~~~~~pp~~~dL~~ELqqLReERdRl~aeLqlSa~li 501 (739)
T PF07111_consen 422 AKVEQALARLPSLSNRLSYAVRRVHTIQGLMARKLALAQLRQEQCPPSPPSVTDLSLELQQLREERDRLDAELQLSARLI 501 (739)
T ss_pred HHHHHHHHHHHHHhHHHHHHhcccchhHHHHHHHHHHHHHHhccCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34555555666655555432 3445667776765442111 1234445566666677777766666541
Q ss_pred ---HhhhhcchhhHHHHHHHHHHHHHHHHhhcCC
Q 045262 372 ---LHADKCAGVEELVYLKWINACLRYELRNYQP 402 (594)
Q Consensus 372 ---Lq~dRfseVEELVYLRWVNACLR~ELrn~q~ 402 (594)
...-|--.-.|+.-|.-++-=|+.+|..++.
T Consensus 502 qqeV~~ArEqgeaE~~~Lse~aqqLE~~Lq~~qe 535 (739)
T PF07111_consen 502 QQEVGRAREQGEAERQQLSEVAQQLEQELQEKQE 535 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122333445666666666666666655543
No 287
>KOG4196 consensus bZIP transcription factor MafK [Transcription]
Probab=62.66 E-value=53 Score=31.71 Aligned_cols=76 Identities=26% Similarity=0.401 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhh
Q 045262 253 TKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRL 332 (594)
Q Consensus 253 ~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL 332 (594)
.-+|+|.+++ ...+++++.-|||+--.|+-......++- |+++--.+||.+-.+|.+-.+.|-.|+..+...|
T Consensus 32 mSVReLNr~L---rG~~reEVvrlKQrRRTLKNRGYA~sCR~----KRv~Qk~eLE~~k~~L~qqv~~L~~e~s~~~~E~ 104 (135)
T KOG4196|consen 32 MSVRELNRHL---RGLSREEVVRLKQRRRTLKNRGYAQSCRV----KRVQQKHELEKEKAELQQQVEKLKEENSRLRREL 104 (135)
T ss_pred hhHHHHHHHh---cCCCHHHHHHHHHHHHHHhhhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777744 56788999999999999988876544331 3334445566555555555555555555544444
Q ss_pred hhh
Q 045262 333 EST 335 (594)
Q Consensus 333 ~sA 335 (594)
++-
T Consensus 105 da~ 107 (135)
T KOG4196|consen 105 DAY 107 (135)
T ss_pred HHH
Confidence 433
No 288
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=62.42 E-value=1.5e+02 Score=29.03 Aligned_cols=104 Identities=27% Similarity=0.400 Sum_probs=58.2
Q ss_pred chHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 164 DCEQEVKNLKNMVQMLQD---REKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVAD 240 (594)
Q Consensus 164 d~e~EI~~LR~lVeeLqE---RE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e 240 (594)
....|+..|+.-.+.|.- ||..+..+.- ..+.++|-.+. .+...|..+|..|+++|+.|+..+..
T Consensus 47 ~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e---------~~l~~~Ed~~~---~e~k~L~~~v~~Le~e~r~L~~~~~~ 114 (158)
T PF09744_consen 47 EHEVELELLREDNEQLETQYEREKELRKQAE---------EELLELEDQWR---QERKDLQSQVEQLEEENRQLELKLKN 114 (158)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345577777766665543 3333332222 12223333322 35556788899999999999976665
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 045262 241 HAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTK 282 (594)
Q Consensus 241 ~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~ 282 (594)
+..-..-| ...-..|+++......+-++-+..+++.|.+
T Consensus 115 ~~~q~~rl---ee~e~~l~~e~~~l~er~~e~l~~~~e~ver 153 (158)
T PF09744_consen 115 LSDQSSRL---EEREAELKKEYNRLHERERELLRKLKEHVER 153 (158)
T ss_pred hhhhcccc---chhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54433323 2333445556666666666666666666554
No 289
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=62.31 E-value=1.5e+02 Score=28.57 Aligned_cols=72 Identities=21% Similarity=0.280 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045262 166 EQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAK 243 (594)
Q Consensus 166 e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~ 243 (594)
..++.+-++---.|+.+--.|+.+|--.-. +++..+.+. .-...+|..|.-.|..|-.+.++|..++..+..
T Consensus 9 ~~kLK~~~~e~dsle~~v~~LEreLe~~q~--~~e~~~~da----En~k~eie~L~~el~~lt~el~~L~~EL~~l~s 80 (140)
T PF10473_consen 9 EEKLKESESEKDSLEDHVESLERELEMSQE--NKECLILDA----ENSKAEIETLEEELEELTSELNQLELELDTLRS 80 (140)
T ss_pred HHHHHHHHHhHhhHHHHHHHHHHHHHHHHH--hHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555556666666677766643322 223333333 334567777777777777777777766655543
No 290
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=62.11 E-value=1.9e+02 Score=29.58 Aligned_cols=30 Identities=13% Similarity=0.164 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 045262 227 LQADNRRLEAQVADHAKTVSELEAAKTKIK 256 (594)
Q Consensus 227 LE~En~RLq~qv~e~~~v~~ELE~ar~kir 256 (594)
+..-|.+||..+.++..++..-......|+
T Consensus 43 m~evNrrlQ~hl~EIR~LKe~NqkLqedNq 72 (195)
T PF10226_consen 43 MKEVNRRLQQHLNEIRGLKEVNQKLQEDNQ 72 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444454444444444433333333333
No 291
>smart00338 BRLZ basic region leucin zipper.
Probab=61.98 E-value=66 Score=26.18 Aligned_cols=30 Identities=27% Similarity=0.380 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhHh
Q 045262 299 SRLQRLKVLEAEAEDLRKSNMKLQLENSQL 328 (594)
Q Consensus 299 kKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL 328 (594)
+|.+.+.+||.+|..|...|.+|+.+...|
T Consensus 23 rKk~~~~~Le~~~~~L~~en~~L~~~~~~l 52 (65)
T smart00338 23 RKKAEIEELERKVEQLEAENERLKKEIERL 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677888888888877777777665555
No 292
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=61.38 E-value=2.8e+02 Score=31.45 Aligned_cols=130 Identities=18% Similarity=0.268 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHH-hh
Q 045262 248 LEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLE-NS 326 (594)
Q Consensus 248 LE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~E-Kr 326 (594)
+..++.++..|+++|...-......+ ++.+..-..+...........+.+-+..+..+..-.++.+.-.+|+.. ..
T Consensus 253 i~~a~~~i~~L~~~l~~l~~~~~~~l---~~~L~~q~~e~~~~~~~~~~~~le~~~~~~~~~~~~e~~~~~~~l~~~~~~ 329 (582)
T PF09731_consen 253 IAHAKERIDALQKELAELKEEEEEEL---ERALEEQREELLSKLREELEQELEEKRAELEEELREEFEREREELEEKYEE 329 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhcchhhHH
Q 045262 327 QLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHADKCAGVEEL 383 (594)
Q Consensus 327 eL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQVEqLq~dRfseVEEL 383 (594)
+|...|...+..+..-+.+... ......-|+-+..+...|++-+..|...+++|
T Consensus 330 ~L~~eL~~~~~~~~~~l~~~l~---~~~~e~~~~~~~~i~~~v~~Er~~~~~~l~~~ 383 (582)
T PF09731_consen 330 ELRQELKRQEEAHEEHLKNELR---EQAIELQREFEKEIKEKVEQERNGRLAKLAEL 383 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 293
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=61.33 E-value=16 Score=40.74 Aligned_cols=68 Identities=10% Similarity=0.231 Sum_probs=49.6
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 198 EQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVA---DHAKTVSELEAAKTKIKLLKKKLRTEA 266 (594)
Q Consensus 198 EQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~---e~~~v~~ELE~ar~kir~LqkKl~~~a 266 (594)
..-++|+||+.++.+-+..-..... +..|+.....++..+. ........++.++.+++.+++.++...
T Consensus 319 rT~~Ii~ELe~Ei~~~~~~~~~~~~-l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 389 (448)
T PF05761_consen 319 RTAAIIPELEQEIEIWNSKKYRFEE-LQELEELLEELQDHLDQLRSSSELRPDISELRKERRELRREMKELF 389 (448)
T ss_dssp EEEEE-TTHHHHHHHHHHTHHHHHH-HHHHHHHCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred EEEEEehhhhhhhhhhhhcchhhhH-HHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHhhhc
Confidence 3457799999999987766655444 8888888888887777 667777777778887777777766443
No 294
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=61.33 E-value=1.6e+02 Score=34.06 Aligned_cols=45 Identities=27% Similarity=0.371 Sum_probs=36.7
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 045262 242 AKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQ 286 (594)
Q Consensus 242 ~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~ 286 (594)
.....||..+..+|.-||..+.+-..-=+.||-++=++++.|..+
T Consensus 458 ~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmNeq 502 (518)
T PF10212_consen 458 ESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMNEQ 502 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 345567788888888888888888888888999999999988865
No 295
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=61.19 E-value=16 Score=41.33 Aligned_cols=20 Identities=40% Similarity=0.353 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 045262 219 LLNLKIESLQADNRRLEAQV 238 (594)
Q Consensus 219 ~L~~kI~sLE~En~RLq~qv 238 (594)
.+..+|+.|++|+++|++|+
T Consensus 101 dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 101 DDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666665
No 296
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=61.17 E-value=50 Score=37.52 Aligned_cols=46 Identities=22% Similarity=0.217 Sum_probs=36.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhh
Q 045262 295 PDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEI 340 (594)
Q Consensus 295 ~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~ 340 (594)
+-+.+=.-.+++|+.++..|.+-|+.|..||..|..|......+++
T Consensus 59 DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~ 104 (472)
T TIGR03752 59 DTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQ 104 (472)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 4455555668889999999999999999999998887776666664
No 297
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=61.07 E-value=1.1e+02 Score=34.43 Aligned_cols=20 Identities=30% Similarity=0.288 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHhHHHHHH
Q 045262 305 KVLEAEAEDLRKSNMKLQLE 324 (594)
Q Consensus 305 keLE~Ev~ELRr~NkeLQ~E 324 (594)
.+++.+..+|++...+||.+
T Consensus 148 ~~~~~~~~~~~~~l~~l~~~ 167 (525)
T TIGR02231 148 REAERRIRELEKQLSELQNE 167 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 298
>COG4913 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=61.00 E-value=3.9e+02 Score=32.76 Aligned_cols=118 Identities=23% Similarity=0.303 Sum_probs=82.0
Q ss_pred CCCCCCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHH
Q 045262 148 KSDVENPRPCRGSEKDDCEQEVKNLKNMVQMLQDREKNL----EVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLK 223 (594)
Q Consensus 148 ~~~~~~~~a~~~~e~~d~e~EI~~LR~lVeeLqERE~~L----E~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~k 223 (594)
|.+++.-..|+-... +..-|+-|+.+|+.+.-|+.-+ -.+--||-.|+||--.+.++..- .-....+..+...
T Consensus 599 R~kl~DRS~Y~LG~t--N~~Kv~TL~~~~k~~~~~~~~~~~~i~~~q~e~~klqeq~~Al~~i~~~-~fa~ID~~Sa~rq 675 (1104)
T COG4913 599 RRKLGDRSTYRLGST--NDAKVETLRETVKAMLSREDFYMIKIMRQQGEYIKLQEQANALAHIQAL-NFASIDLPSAQRQ 675 (1104)
T ss_pred hhhcCccceeeecCC--cHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhc-chhhcchhhHHHH
Confidence 334444444443222 3456888999999998887543 33445677777777666665432 4445556677888
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 224 IESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQ 268 (594)
Q Consensus 224 I~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q 268 (594)
|+-|+.+-++|..--.....+...|.+|....+.|.++.+..+..
T Consensus 676 Iael~~~lE~L~~t~~~~~~~~~~l~aaQT~~~vler~~~~~~~e 720 (1104)
T COG4913 676 IAELQARLERLTHTQSDIAIAKAALDAAQTRQKVLERQYQQEVTE 720 (1104)
T ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888777777788888999999999999988876643
No 299
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=60.72 E-value=4.1e+02 Score=32.92 Aligned_cols=121 Identities=16% Similarity=0.123 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhch-----hhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH----HHHH
Q 045262 167 QEVKNLKNMVQMLQDREKNLEVELLEYYGLK-----EQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRR----LEAQ 237 (594)
Q Consensus 167 ~EI~~LR~lVeeLqERE~~LE~ELLEyy~LK-----EQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~R----Lq~q 237 (594)
.++..=|.++..++.+=..|+++|-+--.+. ||| .++....+|.+...+.+.-...|+.++-.+-- .++.
T Consensus 351 ~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~e-qLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~kl 429 (980)
T KOG0980|consen 351 NLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQE-QLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKL 429 (980)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 3456667777777777778888887765543 223 34444444555555555544444444433322 2333
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHH
Q 045262 238 VADHAKTVSELEAAKTKIKLLKKKLRTEA---EQNREQILAVQERVTKLQEQAH 288 (594)
Q Consensus 238 v~e~~~v~~ELE~ar~kir~LqkKl~~~a---~q~K~qi~~Lkq~v~~Lq~~E~ 288 (594)
..-|..++.+...+..|+...++|+.... -...++...|-.+|..++....
T Consensus 430 kek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~ 483 (980)
T KOG0980|consen 430 KEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAG 483 (980)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555666777777777765321 2345566677777777776653
No 300
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=60.72 E-value=1.2e+02 Score=34.90 Aligned_cols=37 Identities=30% Similarity=0.180 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHHHH
Q 045262 361 ENTSLSKEVEKLHADKCAGVEELVYLKWINACLRYEL 397 (594)
Q Consensus 361 ~NedL~kQVEqLq~dRfseVEELVYLRWVNACLR~EL 397 (594)
+++.|.+.++.....|-+-.+||-.+.==..=|..||
T Consensus 442 Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL 478 (518)
T PF10212_consen 442 ECRALQKRLESAEKEKESLEEELKEANQNISRLQDEL 478 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444455444444444455555
No 301
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=60.40 E-value=85 Score=32.67 Aligned_cols=30 Identities=17% Similarity=0.059 Sum_probs=13.0
Q ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 045262 206 LQNRLKLNNMEGRLLNLKIESLQADNRRLE 235 (594)
Q Consensus 206 Le~~L~~k~~Ei~~L~~kI~sLE~En~RLq 235 (594)
|+.+|..-+.++.....-|..||.+..+++
T Consensus 4 lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~ 33 (248)
T PF08172_consen 4 LQKELSELEAKLEEQKELNAKLENDLAKVQ 33 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444444443
No 302
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=60.00 E-value=2e+02 Score=29.07 Aligned_cols=107 Identities=16% Similarity=0.257 Sum_probs=55.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045262 164 DCEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAK 243 (594)
Q Consensus 164 d~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~ 243 (594)
....=|.......+-+.-|-..| +||.=||-.-=-... ..|..-+..|+.+...+..++.+...
T Consensus 101 ~w~~al~na~a~lehq~~R~~NL--eLl~~~g~naW~~~n--------------~~Le~~~~~le~~l~~~k~~ie~vN~ 164 (221)
T PF05700_consen 101 AWKEALDNAYAQLEHQRLRLENL--ELLSKYGENAWLIHN--------------EQLEAMLKRLEKELAKLKKEIEEVNR 164 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455777778888888887777 578878741111112 33444444555555555555555555
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHH
Q 045262 244 TVSEL-EAAKTKIKLLKKKLRTEAEQN---REQILAVQERVTKLQEQ 286 (594)
Q Consensus 244 v~~EL-E~ar~kir~LqkKl~~~a~q~---K~qi~~Lkq~v~~Lq~~ 286 (594)
-++-. ..+..+++.|..+-.....++ ..-+..|.++|..++.+
T Consensus 165 ~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~~ 211 (221)
T PF05700_consen 165 ERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKRK 211 (221)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54433 335555555555544444333 12233444444444433
No 303
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=59.96 E-value=72 Score=27.27 Aligned_cols=50 Identities=24% Similarity=0.302 Sum_probs=35.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHHHHH
Q 045262 214 NMEGRLLNLKIESLQADNRRLEAQVADHA----KTVSELEAAKTKIKLLKKKLR 263 (594)
Q Consensus 214 ~~Ei~~L~~kI~sLE~En~RLq~qv~e~~----~v~~ELE~ar~kir~LqkKl~ 263 (594)
...|+.|-.....|+.||.-|.++++... .+++..+.||++|..|=.+++
T Consensus 6 e~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk 59 (65)
T TIGR02449 6 AAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLK 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34677788888889999999887766544 444555777777776655544
No 304
>KOG0993 consensus Rab5 GTPase effector Rabaptin-5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.81 E-value=2.7e+02 Score=31.72 Aligned_cols=151 Identities=27% Similarity=0.324 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHHHHHHHHhhcCChhHH
Q 045262 224 IESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILA-----VQERVTKLQEQAHKAAAIDPDTQ 298 (594)
Q Consensus 224 I~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~-----Lkq~v~~Lq~~E~e~~~~d~E~e 298 (594)
-..|--+|..|++.-.++..++.+|-.|.+++.-++. |-+-.+-+|.+... -+..|+.||+--- ...+..
T Consensus 23 ee~~~rq~a~~qa~q~dl~~lrtql~~a~aeme~ika-ia~vsE~tk~EaV~av~rq~~eeVaSlqa~~k---~~~~~y- 97 (542)
T KOG0993|consen 23 EEDLKRQNAVLQAAQDDLGHLRTQLWEAQAEMENIKA-IATVSEPTKSEAVSAVVRQEEEEVASLQASQK---SPNPTY- 97 (542)
T ss_pred hhHHHhccchhhhhcchHHHHHHHHHHHHHHHHHHHH-HHHhcCcchHHHHHHHHHhhccccchhHHHhc---CCCccH-
Confidence 3566777888888888888888888888887766643 44444555554321 2234666664321 111222
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhcc
Q 045262 299 SRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHADKCA 378 (594)
Q Consensus 299 kKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQVEqLq~dRfs 378 (594)
-++.+..||+|--.+...-..+..|...|-..|.-++-..+ +++ +.+++.+...+||+----..|+|+.|.+ -.+
T Consensus 98 -e~q~~~~leqertq~qq~~e~~erEv~~l~~llsr~~~~~~--Len-em~ka~Ed~eKlrelv~pmekeI~elk~-kl~ 172 (542)
T KOG0993|consen 98 -ECQMCQNLEQERTQLQQNEEKLEREVKALMELLSRGQYQLD--LEN-EMDKAKEDEEKLRELVTPMEKEINELKK-KLA 172 (542)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhh--hHH-HHHHHHhhHHHHHHHHhhHHHHHHHHHH-HHH
Confidence 24556667777777777777777776666666665554433 222 2345667778888887788888888864 345
Q ss_pred hhhHHH
Q 045262 379 GVEELV 384 (594)
Q Consensus 379 eVEELV 384 (594)
..|++|
T Consensus 173 ~aE~~i 178 (542)
T KOG0993|consen 173 KAEQRI 178 (542)
T ss_pred hHHHHH
Confidence 555554
No 305
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.40 E-value=2.5e+02 Score=29.97 Aligned_cols=74 Identities=22% Similarity=0.290 Sum_probs=45.7
Q ss_pred chhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 045262 196 LKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQ 272 (594)
Q Consensus 196 LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~q 272 (594)
+.-|++.+-+++..+.--..+|+.|.-.|+.++.....+++++.+. ..++...+.+|..|...|...-+--+.+
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~---~~eik~l~~eI~~~~~~I~~r~~~l~~r 106 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQS---KAEIKKLQKEIAELKENIVERQELLKKR 106 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567777777777777777777777777777777766666655433 3444444455555555554444433333
No 306
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=59.02 E-value=3.3e+02 Score=31.29 Aligned_cols=16 Identities=19% Similarity=0.488 Sum_probs=7.6
Q ss_pred HHHHHHhhHHHHHHHH
Q 045262 355 SQRLREENTSLSKEVE 370 (594)
Q Consensus 355 ~~~LR~~NedL~kQVE 370 (594)
+++.|..|+++...+.
T Consensus 505 aNRYR~~~~~v~~al~ 520 (560)
T PF06160_consen 505 ANRYRSDNPEVDEALT 520 (560)
T ss_pred HhcccCCCHHHHHHHH
Confidence 4445555554444443
No 307
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=59.02 E-value=78 Score=30.79 Aligned_cols=19 Identities=37% Similarity=0.338 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHhHHHHH
Q 045262 305 KVLEAEAEDLRKSNMKLQL 323 (594)
Q Consensus 305 keLE~Ev~ELRr~NkeLQ~ 323 (594)
++-|.++..|+...+.|+.
T Consensus 171 ~~~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 171 EKKEKEIEALKKQSEGLQK 189 (192)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444443
No 308
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=58.76 E-value=2.1e+02 Score=29.05 Aligned_cols=56 Identities=20% Similarity=0.243 Sum_probs=26.8
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHHHH
Q 045262 205 ELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSEL-EAAKTKIKLLKK 260 (594)
Q Consensus 205 ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~EL-E~ar~kir~Lqk 260 (594)
.|+.++..-....+.+...|.+++.+...|+.++.+......+| -.+...+..|+.
T Consensus 60 ~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~~L~~ 116 (251)
T PF11932_consen 60 QLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMIDELEQ 116 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555555555555555555555555554 233333444433
No 309
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=58.36 E-value=75 Score=27.18 Aligned_cols=40 Identities=25% Similarity=0.235 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhh
Q 045262 301 LQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEI 340 (594)
Q Consensus 301 lq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~ 340 (594)
++.+..|..|=.-||.....++.|.+.|.-|.+.|..++.
T Consensus 13 i~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvE 52 (65)
T TIGR02449 13 LEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVE 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666666666777777777777777777776666553
No 310
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=57.55 E-value=2.5e+02 Score=29.38 Aligned_cols=72 Identities=19% Similarity=0.236 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHhhhchhh-HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 045262 168 EVKNLKNMVQMLQDR---EKNLEVELLEYYGLKEQ-ETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVA 239 (594)
Q Consensus 168 EI~~LR~lVeeLqER---E~~LE~ELLEyy~LKEQ-Ea~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~ 239 (594)
=+..+..++...... -.+.+.=|-+|..-++. +..+..+...|..+..++.....+...++.+.+.++....
T Consensus 153 ~~~~~~~~~~~Y~~~p~Kg~ka~evL~~fl~~~~~~~~~ilq~d~~L~~~ek~~~~~~~k~e~~e~e~~~l~e~~~ 228 (297)
T PF02841_consen 153 FLKELDELEKEYEQEPGKGVKAEEVLQEFLQSKESMENSILQADQQLTEKEKEIEEEQAKAEAAEKEKEKLEEKQK 228 (297)
T ss_dssp HHHHHHHHHHHHHHSS---TTHHHHHHHHHHHCHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444455544333 11233223344333332 2234555556666666666666666666666666665443
No 311
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=57.47 E-value=2.7e+02 Score=29.81 Aligned_cols=61 Identities=30% Similarity=0.386 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q 045262 305 KVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHA 374 (594)
Q Consensus 305 keLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQVEqLq~ 374 (594)
..+-.||..|...++.|..|+..+..|-+.+...+.. +.++...+....+.+.+++++|.+
T Consensus 240 ~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~---------m~eer~~~~~~~~~~~~k~~kLe~ 300 (309)
T PF09728_consen 240 ETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIE---------MAEERQKLEKELEKLKKKIEKLEK 300 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455899999999999999999999998877765432 334555566667777777777754
No 312
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=57.45 E-value=2.8e+02 Score=29.92 Aligned_cols=74 Identities=20% Similarity=0.288 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 045262 166 EQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTV 245 (594)
Q Consensus 166 e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~ 245 (594)
.+-....|.-+.++|+--..+|.+| |+.+..||.++.--..+...|..++.. -+.++..+-++.....
T Consensus 26 kq~f~~~reEl~EFQegSrE~Eael---------esqL~q~etrnrdl~t~nqrl~~E~e~---~Kek~e~q~~q~y~q~ 93 (333)
T KOG1853|consen 26 KQHFLQMREELNEFQEGSREIEAEL---------ESQLDQLETRNRDLETRNQRLTTEQER---NKEKQEDQRVQFYQQE 93 (333)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 3444455555566665544455443 344455555555444444444444332 2455666666666666
Q ss_pred HHHHHH
Q 045262 246 SELEAA 251 (594)
Q Consensus 246 ~ELE~a 251 (594)
.+|+.-
T Consensus 94 s~Ledd 99 (333)
T KOG1853|consen 94 SQLEDD 99 (333)
T ss_pred HHHHHH
Confidence 666543
No 313
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=57.33 E-value=90 Score=27.03 Aligned_cols=30 Identities=30% Similarity=0.342 Sum_probs=16.7
Q ss_pred chhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 045262 196 LKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNR 232 (594)
Q Consensus 196 LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~ 232 (594)
||||+..+-.|+++ -=-|.++|--|+....
T Consensus 2 lrEqe~~i~~L~KE-------NF~LKLrI~fLee~l~ 31 (75)
T PF07989_consen 2 LREQEEQIDKLKKE-------NFNLKLRIYFLEERLQ 31 (75)
T ss_pred HHHHHHHHHHHHHh-------hhhHHHHHHHHHHHHH
Confidence 67777777776554 2234445555554443
No 314
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=57.28 E-value=10 Score=30.66 Aligned_cols=21 Identities=43% Similarity=0.422 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHH
Q 045262 303 RLKVLEAEAEDLRKSNMKLQL 323 (594)
Q Consensus 303 ~lkeLE~Ev~ELRr~NkeLQ~ 323 (594)
++-+||.||.-||+.|++|=+
T Consensus 19 rv~eLEeEV~~LrKINrdLfd 39 (48)
T PF14077_consen 19 RVSELEEEVRTLRKINRDLFD 39 (48)
T ss_pred eHHHHHHHHHHHHHHhHHHHh
Confidence 578999999999999999843
No 315
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=56.78 E-value=29 Score=37.65 Aligned_cols=38 Identities=18% Similarity=0.317 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhh
Q 045262 302 QRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLE 339 (594)
Q Consensus 302 q~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~ 339 (594)
+++.+||..+.++......++.+...|..+|+..+..+
T Consensus 151 eris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrs 188 (370)
T PF02994_consen 151 ERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRS 188 (370)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34777888888888888888888888888888777654
No 316
>PRK11519 tyrosine kinase; Provisional
Probab=56.74 E-value=3.9e+02 Score=31.47 Aligned_cols=32 Identities=13% Similarity=0.098 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhhhhcchh
Q 045262 349 EALNEMSQRLREENTSLSKEVEKLHADKCAGV 380 (594)
Q Consensus 349 ~~i~ee~~~LR~~NedL~kQVEqLq~dRfseV 380 (594)
..+..+.+..+.-|+.|....++++......+
T Consensus 373 ~~L~Re~~~~~~lY~~lL~r~~e~~i~~a~~~ 404 (719)
T PRK11519 373 VRLTRDVESGQQVYMQLLNKQQELKITEASTV 404 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhcCCC
Confidence 45666777788889999999998887665443
No 317
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=56.71 E-value=83 Score=25.60 Aligned_cols=30 Identities=33% Similarity=0.415 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhHh
Q 045262 299 SRLQRLKVLEAEAEDLRKSNMKLQLENSQL 328 (594)
Q Consensus 299 kKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL 328 (594)
+|.+.+..||..|..|...|..|..+...|
T Consensus 23 RKk~~~~~Le~~~~~L~~en~~L~~~~~~L 52 (64)
T PF00170_consen 23 RKKQYIEELEEKVEELESENEELKKELEQL 52 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777777766665554
No 318
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=56.36 E-value=1.2e+02 Score=34.50 Aligned_cols=21 Identities=19% Similarity=0.088 Sum_probs=12.9
Q ss_pred hhhHHHHHHHHHHHHHHHHhh
Q 045262 13 LVKFGVAFVFSLAGIFVVRLR 33 (594)
Q Consensus 13 lvr~G~ava~S~A~~~~~r~~ 33 (594)
|+++-+++++-+++|+.-...
T Consensus 5 llk~L~~~v~~~~~~i~ik~~ 25 (472)
T TIGR03752 5 LLKVLVIPVILVVVLIGIKSF 25 (472)
T ss_pred cceehHHHHHHHHHHhheeec
Confidence 566666666666666554443
No 319
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=56.31 E-value=68 Score=32.25 Aligned_cols=42 Identities=24% Similarity=0.297 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 045262 221 NLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKL 262 (594)
Q Consensus 221 ~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl 262 (594)
...+..++.+.+|++...........+++.++.++..++.++
T Consensus 77 ~~~~~~~~~~~~r~~~L~~~~~~s~~~~~~~~~~~~~~~~~l 118 (322)
T TIGR01730 77 EAQLELAQRSFERAERLVKRNAVSQADLDDAKAAVEAAQADL 118 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHH
Confidence 334445555566666666666666666666666655554443
No 320
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=56.30 E-value=32 Score=35.13 Aligned_cols=36 Identities=19% Similarity=0.336 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 045262 224 IESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLK 259 (594)
Q Consensus 224 I~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~Lq 259 (594)
...+.+||++|+++++++..-..+++..+.++..|+
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~ 106 (276)
T PRK13922 71 LFDLREENEELKKELLELESRLQELEQLEAENARLR 106 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555544444444444444443
No 321
>PF14073 Cep57_CLD: Centrosome localisation domain of Cep57
Probab=56.21 E-value=2.3e+02 Score=28.62 Aligned_cols=75 Identities=25% Similarity=0.351 Sum_probs=52.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHH---H-hHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHH
Q 045262 241 HAKTVSELEAAKTKIKLLKKKLRTEAE---Q-NREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRK 316 (594)
Q Consensus 241 ~~~v~~ELE~ar~kir~LqkKl~~~a~---q-~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr 316 (594)
-..+..+|.+|.++|..|.+++....+ . .++....+.+++.--... .-...++..++.++..||.|-.-|.+
T Consensus 59 ~~dl~~qL~aAEtRCslLEKQLeyMRkmv~~ae~er~~~le~q~~l~~e~----~~~~~~~~~klekLe~LE~E~~rLt~ 134 (178)
T PF14073_consen 59 NQDLSSQLSAAETRCSLLEKQLEYMRKMVESAEKERNAVLEQQVSLQRER----QQDQSELQAKLEKLEKLEKEYLRLTA 134 (178)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh----ccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 446677899999999999999885542 2 245666777775533322 23457789999999999998866555
Q ss_pred HhH
Q 045262 317 SNM 319 (594)
Q Consensus 317 ~Nk 319 (594)
+-.
T Consensus 135 ~Q~ 137 (178)
T PF14073_consen 135 TQS 137 (178)
T ss_pred HHH
Confidence 443
No 322
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=56.00 E-value=1.3e+02 Score=29.11 Aligned_cols=35 Identities=14% Similarity=0.330 Sum_probs=17.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 045262 215 MEGRLLNLKIESLQADNRRLEAQVADHAKTVSELE 249 (594)
Q Consensus 215 ~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE 249 (594)
..|.....++..+.++...|+.||.+...-.+.|.
T Consensus 13 k~i~~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk 47 (155)
T PF06810_consen 13 KDIEAPKAKVDKVKEERDNLKTQLKEADKQIKDLK 47 (155)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555554444444443
No 323
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=55.95 E-value=91 Score=29.37 Aligned_cols=59 Identities=17% Similarity=0.248 Sum_probs=27.8
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 205 ELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEA 266 (594)
Q Consensus 205 ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a 266 (594)
+|.+++.....++..+...+..+......|+.. .......++.+|.+...|+.++=..+
T Consensus 34 dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~~~---~~~~~~rl~~~r~r~~~L~hR~l~v~ 92 (141)
T PF13874_consen 34 DLKKRVEAQEEEIAQHRERLKEINDKLEELQKH---DLETSARLEEARRRHQELSHRLLRVL 92 (141)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555556666666666666665555322 44555666666776666666554443
No 324
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=55.92 E-value=1.8e+02 Score=27.27 Aligned_cols=41 Identities=24% Similarity=0.259 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhh
Q 045262 300 RLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEI 340 (594)
Q Consensus 300 Klq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~ 340 (594)
..+++.+|+.+|.|+++-...=-..|.+|-.+|.-++...+
T Consensus 56 ~~qr~~eLqaki~ea~~~le~eK~ak~~l~~r~~k~~~dka 96 (107)
T PF09304_consen 56 RNQRIAELQAKIDEARRNLEDEKQAKLELESRLLKAQKDKA 96 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 34667888888888887777666666677777777776554
No 325
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=55.82 E-value=2.3e+02 Score=28.46 Aligned_cols=108 Identities=19% Similarity=0.231 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHH--HhhhhhhHHHHHHH---HHHHHHHHHHHHHHHH
Q 045262 166 EQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRL--KLNNMEGRLLNLKI---ESLQADNRRLEAQVAD 240 (594)
Q Consensus 166 e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L--~~k~~Ei~~L~~kI---~sLE~En~RLq~qv~e 240 (594)
+..|...|..|-...-.+.+++.++-++-.. +.+++++. .+...+=+.-+.-+ ...+....+|+.++..
T Consensus 37 ~~~l~~ar~~lA~~~a~~k~~e~~~~~~~~~------~~~~~~~A~~Al~~G~EdLAr~Al~~k~~~~~~~~~l~~~~~~ 110 (219)
T TIGR02977 37 EDTLVEVRTTSARTIADKKELERRVSRLEAQ------VADWQEKAELALSKGREDLARAALIEKQKAQELAEALERELAA 110 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467777777777777777777776655443 44444432 23333322222222 2233333344444333
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 045262 241 HAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQ 284 (594)
Q Consensus 241 ~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq 284 (594)
+...++.++.++..|+.++..- +++...+..+.+.+.-+
T Consensus 111 ---~~~~v~~l~~~l~~L~~ki~~~--k~k~~~l~ar~~~A~a~ 149 (219)
T TIGR02977 111 ---VEETLAKLQEDIAKLQAKLAEA--RARQKALAIRHQAASSR 149 (219)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 3344445556666666666543 34444444444444443
No 326
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=55.07 E-value=33 Score=35.93 Aligned_cols=37 Identities=14% Similarity=0.188 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHH
Q 045262 223 KIESLQADNRRLEAQVADH-AKTVSELEAAKTKIKLLK 259 (594)
Q Consensus 223 kI~sLE~En~RLq~qv~e~-~~v~~ELE~ar~kir~Lq 259 (594)
.+..|++||++|+++++++ .......+.++.+|+.|+
T Consensus 67 ~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr 104 (283)
T TIGR00219 67 DVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLR 104 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456788899998888776 333332333444444444
No 327
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=54.86 E-value=2.6e+02 Score=28.83 Aligned_cols=45 Identities=16% Similarity=0.251 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 045262 218 RLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKL 262 (594)
Q Consensus 218 ~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl 262 (594)
++|...|.-++++...+...++........++.=-.++.....++
T Consensus 27 ~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~ 71 (225)
T COG1842 27 KMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKL 71 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677788888888877777777766666665554333333333333
No 328
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=54.06 E-value=70 Score=28.27 Aligned_cols=28 Identities=29% Similarity=0.304 Sum_probs=24.5
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 045262 203 VMELQNRLKLNNMEGRLLNLKIESLQAD 230 (594)
Q Consensus 203 v~ELe~~L~~k~~Ei~~L~~kI~sLE~E 230 (594)
..+|.+.|..+..||+.|+.-|++|+..
T Consensus 7 Nk~L~~kL~~K~eEI~rLn~lv~sLR~K 34 (76)
T PF11544_consen 7 NKELKKKLNDKQEEIDRLNILVGSLRGK 34 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999999999999999998876
No 329
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=53.87 E-value=2.7e+02 Score=28.82 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=14.2
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 045262 208 NRLKLNNMEGRLLNLKIESLQADNRRLE 235 (594)
Q Consensus 208 ~~L~~k~~Ei~~L~~kI~sLE~En~RLq 235 (594)
.++.....+++.+..++..++.+..++.
T Consensus 135 ~~~~~~~~~i~~l~~~~~~~~~~~~~~~ 162 (301)
T PF14362_consen 135 AQIARLDAEIAALQAEIDQLEKEIDRAQ 162 (301)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555444
No 330
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=53.78 E-value=2.4e+02 Score=28.09 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHh
Q 045262 348 REALNEMSQRLREENTSLSKEVEKLH 373 (594)
Q Consensus 348 v~~i~ee~~~LR~~NedL~kQVEqLq 373 (594)
++.++++...++.+-+.-+.-|.-|+
T Consensus 137 i~~~~~~~~~~~~~anrwTDNI~~l~ 162 (188)
T PF03962_consen 137 IEKLKEEIKIAKEAANRWTDNIFSLK 162 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 46667777777777666666666554
No 331
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=53.68 E-value=56 Score=27.48 Aligned_cols=37 Identities=24% Similarity=0.192 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 045262 201 TIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQ 237 (594)
Q Consensus 201 a~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~q 237 (594)
..|.+||..|+-...-|+.|+..|...+.+..+|+.+
T Consensus 4 ~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~ 40 (69)
T PF04102_consen 4 ERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQ 40 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555544444444433
No 332
>KOG4787 consensus Uncharacterized conserved protein [Function unknown]
Probab=53.67 E-value=4.6e+02 Score=31.33 Aligned_cols=42 Identities=12% Similarity=-0.105 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhhhcchhhHHHHHHHH
Q 045262 348 REALNEMSQRLREENTSLSKEVEKLHADKCAGVEELVYLKWI 389 (594)
Q Consensus 348 v~~i~ee~~~LR~~NedL~kQVEqLq~dRfseVEELVYLRWV 389 (594)
+..+.++.-....---+|.+++|++.+-+.---+++=-|+-+
T Consensus 503 IK~LE~e~R~S~~Ls~~L~~ElE~~~~~~~~~e~~~evL~~~ 544 (852)
T KOG4787|consen 503 IKILELEKRLSEKLAIDLVSELEGKIPTIDEIEQCCEVLAAV 544 (852)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCcHhHHHHHHHHHHHH
Confidence 455666655555556789999999998887666666556544
No 333
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. DevB from Anabaena sp. strain PCC 7120 is partially characterized as a membrane fusion protein of the DevBCA ABC exporter, probably a glycolipid exporter, required for heterocyst formation. Most Cyanobacteria have one member only, but Nostoc sp. PCC 7120 has seven members.
Probab=53.61 E-value=2.7e+02 Score=28.71 Aligned_cols=63 Identities=17% Similarity=0.235 Sum_probs=40.8
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 204 MELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEA 266 (594)
Q Consensus 204 ~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a 266 (594)
..++.++..-..++......+...+.+-.|.+...........+++.++.....++..+....
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~a~~~~~R~~~L~~~g~iS~~~~d~~~~~~~~a~~~l~~~~ 155 (327)
T TIGR02971 93 AKLFKDVAAQQATLNRLEAELETAQREVDRYRSLFRDGAVSASDLDSKALKLRTAEEELEEAL 155 (327)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555666666666666777777777777777777777777777766666555443
No 334
>PF03112 DUF244: Uncharacterized protein family (ORF7) DUF; InterPro: IPR004335 Many of the proteins in this entry are Borrelia burgdorferi plasmid proteins of unknown function.
Probab=53.19 E-value=92 Score=30.77 Aligned_cols=74 Identities=22% Similarity=0.289 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHH--------HHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 169 VKNLKNMVQMLQDR--------EKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVAD 240 (594)
Q Consensus 169 I~~LR~lVeeLqER--------E~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e 240 (594)
.+.+-.+|++|-++ |..-..+|.||-.-=+=|..-.+....|+..-+||+.+..+++..|.||++.+..+.+
T Consensus 23 ~d~~~~lVe~lve~SdfY~~gvEfdw~~eFveyV~cvdLeI~~eq~a~nLe~~L~EI~~lq~ElnKiqnEn~k~ekp~Kd 102 (158)
T PF03112_consen 23 NDTFIKLVEELVERSDFYSSGVEFDWKDEFVEYVDCVDLEIKTEQSAENLECSLMEIDSLQTELNKIQNENKKREKPIKD 102 (158)
T ss_pred HHHHHHHHHHHHHHhHHHHhhhhhhHHHHHHHHHHHHHhhccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhchHHH
Confidence 45666777777765 5666778888876544444445555556666777777777777777777777655555
Q ss_pred HH
Q 045262 241 HA 242 (594)
Q Consensus 241 ~~ 242 (594)
..
T Consensus 103 ~L 104 (158)
T PF03112_consen 103 LL 104 (158)
T ss_pred HH
Confidence 43
No 335
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=52.40 E-value=1.6e+02 Score=32.18 Aligned_cols=38 Identities=26% Similarity=0.455 Sum_probs=26.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHH
Q 045262 164 DCEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQET 201 (594)
Q Consensus 164 d~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa 201 (594)
|..+|.+.|..-.++||+.-......+-|...++.+-+
T Consensus 1 e~~eEW~eL~~efq~Lqethr~Y~qKleel~~lQ~~C~ 38 (330)
T PF07851_consen 1 ECEEEWEELQKEFQELQETHRSYKQKLEELSKLQDKCS 38 (330)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678888888888888887777777766666644433
No 336
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=52.36 E-value=24 Score=32.03 Aligned_cols=29 Identities=21% Similarity=0.375 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhhh
Q 045262 348 REALNEMSQRLREENTSLSKEVEKLHADK 376 (594)
Q Consensus 348 v~~i~ee~~~LR~~NedL~kQVEqLq~dR 376 (594)
++.++++...|+..|.+|..+|+.|+.+.
T Consensus 36 ~~~~~~e~~~l~~~n~~L~~eI~~L~~~~ 64 (105)
T PRK00888 36 VAAQQQTNAKLKARNDQLFAEIDDLKGGQ 64 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCcH
Confidence 34456666777888899999999999863
No 337
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=52.33 E-value=2.5e+02 Score=27.90 Aligned_cols=28 Identities=25% Similarity=0.201 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhHHHHHHhhHhHHhhhh
Q 045262 307 LEAEAEDLRKSNMKLQLENSQLARRLES 334 (594)
Q Consensus 307 LE~Ev~ELRr~NkeLQ~EKreL~~KL~s 334 (594)
=|.|..+--.+-.+.+.||..|+-+|-.
T Consensus 110 KEkEykealea~nEknkeK~~Lv~~L~e 137 (159)
T PF04949_consen 110 KEKEYKEALEAFNEKNKEKAQLVTRLME 137 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666778888888777643
No 338
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=52.04 E-value=3.6e+02 Score=29.68 Aligned_cols=26 Identities=15% Similarity=0.221 Sum_probs=15.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhhh
Q 045262 351 LNEMSQRLREENTSLSKEVEKLHADK 376 (594)
Q Consensus 351 i~ee~~~LR~~NedL~kQVEqLq~dR 376 (594)
+.-++...|+-|+.+....+++....
T Consensus 378 L~Re~~~~r~~ye~lL~r~qe~~~~~ 403 (458)
T COG3206 378 LEREAEAARSLYETLLQRYQELSIQE 403 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445555666666666666666655
No 339
>TIGR03794 NHPM_micro_HlyD NHPM bacteriocin system secretion protein. Members of this protein family are homologs of the HlyD membrane fusion protein of type I secretion systems. Their occurrence in prokaryotic genomes is associated with the occurrence of a novel class of microcin (small bacteriocins) with a propeptide region related to nitrile hydratase. We designate the class of bacteriocin as Nitrile Hydratase Propeptide Microcin, or NHPM. This family, therefore, is designated as NHPM bacteriocin system secretion protein. Some but not all NHPM-class putative microcins belong to the TOMM (thiazole/oxazole modified microcin) class as assessed by the presence of the scaffolding protein and/or cyclodehydratase in the same gene clusters.
Probab=51.41 E-value=3.5e+02 Score=29.33 Aligned_cols=24 Identities=8% Similarity=0.159 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 165 CEQEVKNLKNMVQMLQDREKNLEV 188 (594)
Q Consensus 165 ~e~EI~~LR~lVeeLqERE~~LE~ 188 (594)
....+..++..+..++.+-.+|+.
T Consensus 94 ~~~~~~~~~~~l~~~~~q~~~l~~ 117 (421)
T TIGR03794 94 LRERLQESYQKLTQLQEQLEEVRN 117 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777766666654
No 340
>PF14282 FlxA: FlxA-like protein
Probab=51.30 E-value=1e+02 Score=27.95 Aligned_cols=41 Identities=20% Similarity=0.371 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhh
Q 045262 295 PDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLEST 335 (594)
Q Consensus 295 ~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sA 335 (594)
...+.|.+.++.|...+..|..-..+||.++.+-...-...
T Consensus 44 ~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~~~~~~~~~~ 84 (106)
T PF14282_consen 44 LDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQAEQQQQKQSS 84 (106)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34566778889999999999999999999988876554443
No 341
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=51.16 E-value=3e+02 Score=29.43 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=15.9
Q ss_pred ccchhhHHhhhhc-c-CCCCCCCCCCc
Q 045262 117 YLLPEFNELVKEI-D-FGGPNVGYHPK 141 (594)
Q Consensus 117 ~lLpEf~dl~~e~-d-~~~~~~~~~~~ 141 (594)
-++|+|..+|+.| + .|.+...+.++
T Consensus 93 ~Vk~S~~silq~If~KHGDIAsNc~lk 119 (269)
T PF05278_consen 93 QVKPSQVSILQKIFEKHGDIASNCKLK 119 (269)
T ss_pred EEcHhHHHHHHHHHHhCccHhhccccC
Confidence 4789999999654 3 55554444333
No 342
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=51.07 E-value=65 Score=29.96 Aligned_cols=47 Identities=19% Similarity=0.200 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 045262 202 IVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSEL 248 (594)
Q Consensus 202 ~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~EL 248 (594)
.+..||.+|..-..++..|...|..|-+||.+|+-+-..+.....++
T Consensus 9 ~l~~le~~l~~l~~el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 9 ALDDLEQNLGVLLKELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46778888888888888899999999999988887666555554444
No 343
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=51.03 E-value=1.4e+02 Score=32.81 Aligned_cols=100 Identities=25% Similarity=0.309 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHhH
Q 045262 167 QEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQ--VADHAKT 244 (594)
Q Consensus 167 ~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~q--v~e~~~v 244 (594)
.-+..|++.|..|.---.+||.||+ .+|.+-..+ -..+..--.+++.|.+||+.. ..+..++
T Consensus 221 ~RMqvlkrQv~SL~~HQ~KLEaEL~-------------q~Ee~hq~k---Krk~~estdsf~~eLKr~c~~kvevd~eK~ 284 (410)
T KOG4715|consen 221 ARMQVLKRQVQSLMVHQRKLEAELL-------------QIEERHQEK---KRKFLESTDSFNNELKRLCGLKVEVDMEKM 284 (410)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHH---HHHHHhccHHHHHHHHHhcCCcccccHHHH
Confidence 3577899999999999999999998 122221111 122334456788888888733 2334445
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 045262 245 VSELEAAKTKI----KLLKKKLRTEAEQNREQILAVQERVTK 282 (594)
Q Consensus 245 ~~ELE~ar~ki----r~LqkKl~~~a~q~K~qi~~Lkq~v~~ 282 (594)
+.++..|-.+. .+-.++-..-++|+..-+..+..+|+.
T Consensus 285 ~~~i~q~eeq~rkr~eE~~k~a~~~A~~~assa~~~~~~v~~ 326 (410)
T KOG4715|consen 285 AAEIAQAEEQARKRQEEREKEAAEQAEQSASSAPPEEEQVAN 326 (410)
T ss_pred HHHHHHHHHHHHHhHhHHHhhHhhhhhhhhcccchhhhhhhh
Confidence 55544443333 333344444445554455555555543
No 344
>PF12126 DUF3583: Protein of unknown function (DUF3583); InterPro: IPR021978 This domain is found in eukaryotes, and is typically between 302 and 338 amino acids in length. It is found in association with PF00097 from PFAM and PF00643 from PFAM. Most members are promyelocytic leukemia proteins, and this family lies towards the C terminus.
Probab=50.87 E-value=3e+02 Score=30.10 Aligned_cols=49 Identities=22% Similarity=0.259 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHH
Q 045262 225 ESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLK-KKLRTEAEQNREQI 273 (594)
Q Consensus 225 ~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~Lq-kKl~~~a~q~K~qi 273 (594)
..|+.+-.-+.+--++...++.+|+.+|....+|= .+++....+..+|=
T Consensus 6 q~LqeQ~~~F~aahaqm~sav~qL~~~r~~teelIr~rVrq~V~hVqaqE 55 (324)
T PF12126_consen 6 QALQEQDGAFGAAHAQMRSAVSQLGRARADTEELIRARVRQVVAHVQAQE 55 (324)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 45777777788888888889999999998887763 44555544444443
No 345
>smart00340 HALZ homeobox associated leucin zipper.
Probab=50.84 E-value=29 Score=27.65 Aligned_cols=31 Identities=32% Similarity=0.411 Sum_probs=25.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 045262 215 MEGRLLNLKIESLQADNRRLEAQVADHAKTV 245 (594)
Q Consensus 215 ~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~ 245 (594)
+.-+.|++=-++|-+||.||+.+|+++.++.
T Consensus 5 vdCe~LKrcce~LteeNrRL~ke~~eLralk 35 (44)
T smart00340 5 VDCELLKRCCESLTEENRRLQKEVQELRALK 35 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4556788888999999999999999887653
No 346
>PRK00295 hypothetical protein; Provisional
Probab=50.63 E-value=91 Score=26.38 Aligned_cols=36 Identities=28% Similarity=0.198 Sum_probs=18.9
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 045262 202 IVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQ 237 (594)
Q Consensus 202 ~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~q 237 (594)
.|.+||-+|.--..-|+.|+..|...+.+..+|+.+
T Consensus 6 Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~q 41 (68)
T PRK00295 6 RVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQ 41 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555555555555555555555555554444433
No 347
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=50.58 E-value=4.4e+02 Score=30.27 Aligned_cols=61 Identities=16% Similarity=0.258 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 045262 225 ESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQE 285 (594)
Q Consensus 225 ~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~ 285 (594)
...+..+..+.+++...-.+.+.=-.||..+......+.....+.+.+...|...+..++.
T Consensus 274 ~~~~~~~~~i~~~Id~lYd~le~E~~Ak~~V~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~ 334 (560)
T PF06160_consen 274 DEVEEENEEIEERIDQLYDILEKEVEAKKYVEKNLKELYEYLEHAKEQNKELKEELERVSQ 334 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555555555555555444566666666666666666666666666666666654
No 348
>KOG0247 consensus Kinesin-like protein [Cytoskeleton]
Probab=50.42 E-value=5.5e+02 Score=31.30 Aligned_cols=29 Identities=24% Similarity=0.326 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhHhHHhh
Q 045262 304 LKVLEAEAEDLRKSNMKLQLENSQLARRL 332 (594)
Q Consensus 304 lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL 332 (594)
.+++|.-..+|+..|..||..-.+...+.
T Consensus 580 ~~~i~~l~~el~eq~~~~~~~~~~~~~~~ 608 (809)
T KOG0247|consen 580 EEEIEALDQELEEQKMELQQKFSEKKKAM 608 (809)
T ss_pred hhhhHHHHHHHHhhhHHHHhhccchhHHH
Confidence 46677777777778888877766664443
No 349
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=50.33 E-value=3.4e+02 Score=32.94 Aligned_cols=18 Identities=17% Similarity=0.087 Sum_probs=9.4
Q ss_pred hcCChhHHHHHHHHHHHH
Q 045262 291 AAIDPDTQSRLQRLKVLE 308 (594)
Q Consensus 291 ~~~d~E~ekKlq~lkeLE 308 (594)
+-+.+++..|++.|++.-
T Consensus 527 a~n~p~lk~Kle~Lk~~~ 544 (762)
T PLN03229 527 APNYLSLKYKLDMLNEFS 544 (762)
T ss_pred ccccHHHHHHHHHHHHHH
Confidence 344555555555555443
No 350
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=50.04 E-value=3e+02 Score=28.15 Aligned_cols=19 Identities=32% Similarity=0.440 Sum_probs=10.4
Q ss_pred HhHHHHHHHHHHHHHHHHH
Q 045262 268 QNREQILAVQERVTKLQEQ 286 (594)
Q Consensus 268 q~K~qi~~Lkq~v~~Lq~~ 286 (594)
.+..|+..|+.+|-.|+..
T Consensus 165 aaqaQL~~lQ~qv~~Lq~q 183 (192)
T PF11180_consen 165 AAQAQLRQLQRQVRQLQRQ 183 (192)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666554
No 351
>PLN03188 kinesin-12 family protein; Provisional
Probab=49.94 E-value=6.9e+02 Score=32.27 Aligned_cols=90 Identities=20% Similarity=0.153 Sum_probs=45.2
Q ss_pred hchhhHHHHHHHHHHHHhhhhhhH-------HHHHHHHHHHHHHHHHHHHHHHHHhHHHH----HHHHHHHHHHHHHHHH
Q 045262 195 GLKEQETIVMELQNRLKLNNMEGR-------LLNLKIESLQADNRRLEAQVADHAKTVSE----LEAAKTKIKLLKKKLR 263 (594)
Q Consensus 195 ~LKEQEa~v~ELe~~L~~k~~Ei~-------~L~~kI~sLE~En~RLq~qv~e~~~v~~E----LE~ar~kir~LqkKl~ 263 (594)
.|=||=+.+.|.-++|.++--.|. +--.+..-==++.+=..+.++++.+++.| -+.+|.++|-||.|++
T Consensus 1111 r~~e~ya~l~ek~~~ll~~hr~i~egi~dvkkaaakag~kg~~~~f~~alaae~s~l~~ereker~~~~~enk~l~~qlr 1190 (1320)
T PLN03188 1111 RMLEQYADLEEKHIQLLARHRRIQEGIDDVKKAAARAGVRGAESKFINALAAEISALKVEREKERRYLRDENKSLQAQLR 1190 (1320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHh
Confidence 345555666666666665543332 22222222222322233555555555554 4667777777877776
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHH
Q 045262 264 TEAEQNREQILAVQERVTKLQEQAH 288 (594)
Q Consensus 264 ~~a~q~K~qi~~Lkq~v~~Lq~~E~ 288 (594)
--|+ -+.+..+=+-+|++-|+
T Consensus 1191 dtae----av~aagellvrl~eaee 1211 (1320)
T PLN03188 1191 DTAE----AVQAAGELLVRLKEAEE 1211 (1320)
T ss_pred hHHH----HHHHHHHHHHHHHHHHH
Confidence 4333 23333344455655543
No 352
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=49.70 E-value=42 Score=26.64 Aligned_cols=30 Identities=37% Similarity=0.461 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhHh
Q 045262 299 SRLQRLKVLEAEAEDLRKSNMKLQLENSQL 328 (594)
Q Consensus 299 kKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL 328 (594)
+|.+.+.+||.+|..|...|..|+.+...|
T Consensus 22 rkk~~~~~le~~~~~L~~en~~L~~~i~~L 51 (54)
T PF07716_consen 22 RKKQREEELEQEVQELEEENEQLRQEIAQL 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566777777777777777777766555
No 353
>KOG3091 consensus Nuclear pore complex, p54 component (sc Nup57) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=49.66 E-value=1.6e+02 Score=33.98 Aligned_cols=66 Identities=24% Similarity=0.321 Sum_probs=33.9
Q ss_pred HHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhh
Q 045262 256 KLLKKKLRTEA---EQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRL 332 (594)
Q Consensus 256 r~LqkKl~~~a---~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL 332 (594)
+.|+++++.-- ++.+-.|..|.+.|..|+..+.. --..+++.|+.+.+|++-.=-+.+|+
T Consensus 337 ~dL~~R~K~Q~q~~~~~r~ri~~i~e~v~eLqk~~ad-----------------~~~KI~~~k~r~~~Ls~RiLRv~ikq 399 (508)
T KOG3091|consen 337 EDLRQRLKVQDQEVKQHRIRINAIGERVTELQKHHAD-----------------AVAKIEEAKNRHVELSHRILRVMIKQ 399 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555554333 33334455666666666633211 22345566666666666655555555
Q ss_pred hhhhhh
Q 045262 333 ESTQML 338 (594)
Q Consensus 333 ~sAe~~ 338 (594)
+-.+..
T Consensus 400 eilr~~ 405 (508)
T KOG3091|consen 400 EILRKR 405 (508)
T ss_pred HHHhcc
Confidence 555443
No 354
>KOG3564 consensus GTPase-activating protein [General function prediction only]
Probab=49.58 E-value=1.1e+02 Score=35.31 Aligned_cols=31 Identities=26% Similarity=0.364 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 045262 166 EQEVKNLKNMVQMLQDREKNLEVELLEYYGL 196 (594)
Q Consensus 166 e~EI~~LR~lVeeLqERE~~LE~ELLEyy~L 196 (594)
+.|+.+|+.+|+...|+-.++-.++-+|..+
T Consensus 27 e~ef~rl~k~fed~~ek~~r~~ae~~~~~~~ 57 (604)
T KOG3564|consen 27 EDEFIRLRKDFEDFEEKWKRTDAELGKYKDL 57 (604)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 7899999999999999999999999999876
No 355
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=49.26 E-value=4.4e+02 Score=29.83 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 217 GRLLNLKIESLQADNRRLEAQVAD 240 (594)
Q Consensus 217 i~~L~~kI~sLE~En~RLq~qv~e 240 (594)
.+.|+..|+..-.||.+|+.|=-+
T Consensus 287 ar~Lr~~I~~VarENs~LqrQKle 310 (442)
T PF06637_consen 287 ARSLRAGIERVARENSDLQRQKLE 310 (442)
T ss_pred HHHHhhhHHHHHHhhhHHHHHHHH
Confidence 355777788888888888855433
No 356
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=48.95 E-value=3.9e+02 Score=29.14 Aligned_cols=192 Identities=20% Similarity=0.274 Sum_probs=100.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-chhhHHHHHHHHH-HHHhhhhhhHHHH-------------HHHHHH
Q 045262 163 DDCEQEVKNLKNMVQMLQDREKNLEVELLEYYG-LKEQETIVMELQN-RLKLNNMEGRLLN-------------LKIESL 227 (594)
Q Consensus 163 ~d~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~-LKEQEa~v~ELe~-~L~~k~~Ei~~L~-------------~kI~sL 227 (594)
..+..|-..|.+-++-=++---+||+++--|+. | -++|.+.+. +-.-...|+.+.+ -.|+.|
T Consensus 66 n~L~aENt~L~SkLe~EKq~kerLEtEiES~rsRL---aaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~l 142 (305)
T PF14915_consen 66 NVLKAENTMLNSKLEKEKQNKERLETEIESYRSRL---AAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNL 142 (305)
T ss_pred HHHHHHHHHHhHHHHHhHHHHHHHHHHHHHHHHHH---HHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhH
Confidence 344567777888777667777788888877742 2 234444443 2222333333222 223444
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-----HHHHHHHhhcCChhHHHHHH
Q 045262 228 QADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTK-----LQEQAHKAAAIDPDTQSRLQ 302 (594)
Q Consensus 228 E~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~-----Lq~~E~e~~~~d~E~ekKlq 302 (594)
...|.-|. .+|..|.+|+.-|+.++..-.-..++..++|..---- .+.+|.+- ....-+ .
T Consensus 143 kd~ne~Ls----------QqLskaesK~nsLe~elh~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~--m~qne~---~ 207 (305)
T PF14915_consen 143 KDNNEILS----------QQLSKAESKFNSLEIELHHTRDALREKTLALESVQRDLSQTQCQIKEIEH--MYQNEQ---D 207 (305)
T ss_pred HHHhHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHhHH---H
Confidence 44444443 3455666677777666665555555554444321111 11111110 000001 1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhc----chh-----hhHHHHHHHHHHH----HHHhhHHHHHHH
Q 045262 303 RLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEIS----VLE-----DGEREALNEMSQR----LREENTSLSKEV 369 (594)
Q Consensus 303 ~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~----~~E-----~~ev~~i~ee~~~----LR~~NedL~kQV 369 (594)
.+...-+.-.-|.-...+||-||.=|-..|+.|...+.. +++ .++|..+..+... |.+-|..|.++.
T Consensus 208 kv~k~~~Kqes~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~ 287 (305)
T PF14915_consen 208 KVNKYIGKQESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINEC 287 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 233344555566677788888888888889999877642 111 2444444444333 677777776654
Q ss_pred HHH
Q 045262 370 EKL 372 (594)
Q Consensus 370 EqL 372 (594)
--|
T Consensus 288 n~L 290 (305)
T PF14915_consen 288 NHL 290 (305)
T ss_pred HHH
Confidence 443
No 357
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=48.82 E-value=1.6e+02 Score=24.62 Aligned_cols=65 Identities=6% Similarity=0.092 Sum_probs=37.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 045262 217 GRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVT 281 (594)
Q Consensus 217 i~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~ 281 (594)
+..+...|..++....+|...-..+......=...+.++..|-..++..+.+.+..|..|++.+.
T Consensus 9 v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~ 73 (103)
T PF00804_consen 9 VQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKDNE 73 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33344444444444444443333333333211456777777778888888888888777777755
No 358
>PF13166 AAA_13: AAA domain
Probab=48.49 E-value=4.8e+02 Score=30.05 Aligned_cols=14 Identities=36% Similarity=0.584 Sum_probs=8.9
Q ss_pred hhHHHHHHhhhcCC
Q 045262 482 TKFFHKLRKLVRGK 495 (594)
Q Consensus 482 ~kLi~KLKKw~~gk 495 (594)
.-||+-|++|...+
T Consensus 571 ~~F~~~l~~~~~~~ 584 (712)
T PF13166_consen 571 LYFFKELKKWFEEK 584 (712)
T ss_pred HHHHHHHHHHhhhh
Confidence 45677777776543
No 359
>PRK02793 phi X174 lysis protein; Provisional
Probab=48.36 E-value=89 Score=26.74 Aligned_cols=36 Identities=19% Similarity=0.339 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 045262 201 TIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEA 236 (594)
Q Consensus 201 a~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~ 236 (594)
..+.+||-+|.--..-|+.|+..|...+.+..+|+.
T Consensus 8 ~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~ 43 (72)
T PRK02793 8 ARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRD 43 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555444444455555555444444444433
No 360
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=48.35 E-value=4.3e+02 Score=29.47 Aligned_cols=24 Identities=29% Similarity=0.281 Sum_probs=15.5
Q ss_pred chhhhccccCCcCcHHHHHHHHHHhh
Q 045262 407 TVARDLSKTLSPNSEEKAKQLILEYA 432 (594)
Q Consensus 407 ~sA~DLsKslSP~SqekAKqLmLeYa 432 (594)
.++.|+.+.|+ |+.|+=-++.|-.
T Consensus 237 ~~s~~v~~ql~--selkkivf~~eni 260 (401)
T PF06785_consen 237 PSSQDVPKQLV--SELKKIVFKVENI 260 (401)
T ss_pred chhhhhHHHHH--HHHHHHHHHHhhH
Confidence 46677777666 6766666665554
No 361
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=48.29 E-value=4e+02 Score=32.99 Aligned_cols=85 Identities=7% Similarity=0.092 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHh
Q 045262 249 EAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQL 328 (594)
Q Consensus 249 E~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL 328 (594)
...+.++....++....++.-+.+|-.|..+++.|+..-..-++-=.--.+-......|..|+.-|+-.-.+|+-.-++=
T Consensus 526 ~~l~~el~~~~~~~~kl~eer~qklk~le~q~s~lkk~l~~~~~l~~~~~~~~~~~~kl~~ei~~~k~~kv~l~~~~~~d 605 (913)
T KOG0244|consen 526 SRLRNELNVFNRLAAKLGEERVQKLKSLETQISLLKKKLSSQRKLIKPKPKSEGIRAKLLQEIHIAKGQKVQLLRVMKED 605 (913)
T ss_pred HHHHHHHHhhhHHHHHhhhHHHHHHHHHHHHHHHHHHhhHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33333333333333344444444555555555555443211110000000111234557777777777777776665554
Q ss_pred HHhhh
Q 045262 329 ARRLE 333 (594)
Q Consensus 329 ~~KL~ 333 (594)
+.+.-
T Consensus 606 ~ekfr 610 (913)
T KOG0244|consen 606 AEKFR 610 (913)
T ss_pred HHHHH
Confidence 44433
No 362
>PF07989 Microtub_assoc: Microtubule associated; InterPro: IPR012943 Proteins with this domain associate with the spindle body during cell division [].
Probab=47.83 E-value=99 Score=26.76 Aligned_cols=30 Identities=33% Similarity=0.496 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhHhHHhhh
Q 045262 304 LKVLEAEAEDLRKSNMKLQLENSQLARRLE 333 (594)
Q Consensus 304 lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~ 333 (594)
+++.|..+..|++-|=.|-....-|-.+|.
T Consensus 2 lrEqe~~i~~L~KENF~LKLrI~fLee~l~ 31 (75)
T PF07989_consen 2 LREQEEQIDKLKKENFNLKLRIYFLEERLQ 31 (75)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 456666666665555555555555555544
No 363
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=47.83 E-value=1e+02 Score=34.13 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=14.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 216 EGRLLNLKIESLQADNRRLEAQVAD 240 (594)
Q Consensus 216 Ei~~L~~kI~sLE~En~RLq~qv~e 240 (594)
+-..+..++..|+.+.+.+..++..
T Consensus 36 ~~r~l~~~~~~lr~~rn~~sk~i~~ 60 (425)
T PRK05431 36 ERRELQTELEELQAERNALSKEIGQ 60 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666666665554
No 364
>PRK04406 hypothetical protein; Provisional
Probab=47.79 E-value=88 Score=27.09 Aligned_cols=28 Identities=18% Similarity=0.130 Sum_probs=10.5
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 045262 203 VMELQNRLKLNNMEGRLLNLKIESLQAD 230 (594)
Q Consensus 203 v~ELe~~L~~k~~Ei~~L~~kI~sLE~E 230 (594)
+.+||.+|+--..-|+.|+..|...+.+
T Consensus 13 i~~LE~~lAfQE~tIe~LN~~v~~Qq~~ 40 (75)
T PRK04406 13 INDLECQLAFQEQTIEELNDALSQQQLL 40 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333
No 365
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.74 E-value=1.4e+02 Score=26.33 Aligned_cols=27 Identities=26% Similarity=0.441 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 045262 299 SRLQRLKVLEAEAEDLRKSNMKLQLEN 325 (594)
Q Consensus 299 kKlq~lkeLE~Ev~ELRr~NkeLQ~EK 325 (594)
.-...+.=|-.||.||+-.|..|+.|-
T Consensus 15 qAvdTI~LLQmEieELKEknn~l~~e~ 41 (79)
T COG3074 15 QAIDTITLLQMEIEELKEKNNSLSQEV 41 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHhHHHH
Confidence 334455666677777777777666653
No 366
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=47.70 E-value=61 Score=26.48 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=16.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 215 MEGRLLNLKIESLQADNRRLEAQVADH 241 (594)
Q Consensus 215 ~Ei~~L~~kI~sLE~En~RLq~qv~e~ 241 (594)
.++..+..++..++.+|..|+.++...
T Consensus 24 ~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 24 QEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555666666666666666655555
No 367
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=47.54 E-value=97 Score=31.50 Aligned_cols=67 Identities=16% Similarity=0.185 Sum_probs=43.8
Q ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 045262 159 GSEKDDCEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQA 229 (594)
Q Consensus 159 ~~e~~d~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~ 229 (594)
.....|...++-.+...++.|+..+.+|..-|-. -.-...+.++|++|..-..||+.+...+..|..
T Consensus 124 ~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll~k----a~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l~~ 190 (262)
T PF14257_consen 124 NISSEDVTEQYVDLEARLKNLEAEEERLLELLEK----AKTVEDLLEIERELSRVRSEIEQLEGQLKYLDD 190 (262)
T ss_pred eccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466788888888888888888887776543332 223456777777777666666555555554443
No 368
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=47.31 E-value=3.1e+02 Score=32.94 Aligned_cols=43 Identities=28% Similarity=0.332 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 045262 220 LNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKL 262 (594)
Q Consensus 220 L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl 262 (594)
++.-|+.|+.+...++.+..+..+...|++..+.++....+++
T Consensus 513 ~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l 555 (771)
T TIGR01069 513 INVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEEL 555 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555554444444444444444433333
No 369
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=47.18 E-value=2.8e+02 Score=31.19 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHhHHHHH----HhhHhHHhhhhh
Q 045262 304 LKVLEAEAEDLRKSNMKLQL----ENSQLARRLEST 335 (594)
Q Consensus 304 lkeLE~Ev~ELRr~NkeLQ~----EKreL~~KL~sA 335 (594)
+++++.++.+|++....|.- ....|.+.|+.+
T Consensus 154 ~~~~~~~l~~l~~~l~~l~~~~~~~~~~v~v~l~~~ 189 (525)
T TIGR02231 154 IRELEKQLSELQNELNALLTGKSQRSHTVLVRLEAP 189 (525)
T ss_pred HHHHHHHHHHHHHHHHhhccCCccceEEEEEEEecc
Confidence 33444444444444444443 233455555543
No 370
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=46.92 E-value=1e+02 Score=33.22 Aligned_cols=75 Identities=28% Similarity=0.325 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q 045262 299 SRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHAD 375 (594)
Q Consensus 299 kKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQVEqLq~d 375 (594)
+-|+.|.+||..+.-|++-+.+=|++...|-.-|+-...... .+.-+.+.++-|...|.+..++|.+.-..|.-|
T Consensus 15 ~aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e--~ek~e~s~LkREnq~l~e~c~~lek~rqKlshd 89 (307)
T PF10481_consen 15 RALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVE--EEKNEYSALKRENQSLMESCENLEKTRQKLSHD 89 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--HHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHH
No 371
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=46.83 E-value=1.3e+02 Score=32.00 Aligned_cols=64 Identities=19% Similarity=0.325 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 045262 219 LLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKL 283 (594)
Q Consensus 219 ~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~L 283 (594)
.+.-.+..+..+..+++.. ........|++...+.++.-.+++..+..++|..+..++..+..+
T Consensus 179 ~l~~~l~~~~~~~~~~~~~-~~~~~~~~e~~~r~~~lr~~~~~l~~el~~aK~~~~~~~~~~~~~ 242 (264)
T PF07246_consen 179 NLTNELSNLRNDIDKFQER-EDEKILHEELEARESGLRNESKWLEHELSDAKEDMIRLRNDISDF 242 (264)
T ss_pred HhhhhHHHhhchhhhhhhh-hhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHHHhcccch
Confidence 3333344444443344333 334555556655555566666777777777777777666655443
No 372
>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional
Probab=45.89 E-value=6.4e+02 Score=30.74 Aligned_cols=137 Identities=20% Similarity=0.305 Sum_probs=67.9
Q ss_pred CCCchHHHHHHHHHHHHHHH------------HHHHHHHHHH-------HHhhhchhhHHHHH-HHHHHHHhhhhhh---
Q 045262 161 EKDDCEQEVKNLKNMVQMLQ------------DREKNLEVEL-------LEYYGLKEQETIVM-ELQNRLKLNNMEG--- 217 (594)
Q Consensus 161 e~~d~e~EI~~LR~lVeeLq------------ERE~~LE~EL-------LEyy~LKEQEa~v~-ELe~~L~~k~~Ei--- 217 (594)
....++.||+.||..|..-+ |.=-+|..+| --|-|||+.-..+. |+=+ + +...
T Consensus 430 ~~~~Le~elekLk~eilKAk~s~~~~~~~~L~e~IeKLk~E~d~e~S~A~~~~gLk~kL~~Lr~E~sK---a-~~~~~~~ 505 (762)
T PLN03229 430 PVRELEGEVEKLKEQILKAKESSSKPSELALNEMIEKLKKEIDLEYTEAVIAMGLQERLENLREEFSK---A-NSQDQLM 505 (762)
T ss_pred CCccHHHHHHHHHHHHHhcccccCCCCChHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh---c-ccccccc
Confidence 45567888999988776543 4444444444 24566666555554 2211 1 1100
Q ss_pred -HHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHH------------HHHHHHHHHHHH------hHHHHHHHH
Q 045262 218 -RLLNLKIESLQAD-NRRLEAQVADHAKTVSELEAAKTKIK------------LLKKKLRTEAEQ------NREQILAVQ 277 (594)
Q Consensus 218 -~~L~~kI~sLE~E-n~RLq~qv~e~~~v~~ELE~ar~kir------------~LqkKl~~~a~q------~K~qi~~Lk 277 (594)
-.|..+|..|..| |+||.+ +-.|..++..|++.|+.++ .|...|+..... .|+++.+++
T Consensus 506 ~~~L~eK~~kLk~Efnkkl~e-a~n~p~lk~Kle~Lk~~~~~~~~s~g~~~a~~Lk~ei~kki~e~~~~~~~kek~ea~~ 584 (762)
T PLN03229 506 HPVLMEKIEKLKDEFNKRLSR-APNYLSLKYKLDMLNEFSRAKALSEKKSKAEKLKAEINKKFKEVMDRPEIKEKMEALK 584 (762)
T ss_pred cHHHHHHHHHHHHHHHHhhhc-ccccHHHHHHHHHHHHHHHhhhhcccchhhhhhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 0145567777666 455544 3344455555555555444 233333333333 555555555
Q ss_pred HHHHHHHHHHHHhhcCChhHHHHHHHH
Q 045262 278 ERVTKLQEQAHKAAAIDPDTQSRLQRL 304 (594)
Q Consensus 278 q~v~~Lq~~E~e~~~~d~E~ekKlq~l 304 (594)
-.|.+.-+. ....-+.++..|...+
T Consensus 585 aev~~~g~s--~~~~~~~~lkeki~~~ 609 (762)
T PLN03229 585 AEVASSGAS--SGDELDDDLKEKVEKM 609 (762)
T ss_pred HHHHhcCcc--ccCCCCHHHHHHHHHH
Confidence 555552211 1224455555554443
No 373
>PRK00846 hypothetical protein; Provisional
Probab=45.73 E-value=1.1e+02 Score=27.05 Aligned_cols=38 Identities=16% Similarity=0.199 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 045262 201 TIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQV 238 (594)
Q Consensus 201 a~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv 238 (594)
..+.+||.+|.-...-|+.|+..|...+.+..+|+.++
T Consensus 13 ~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql 50 (77)
T PRK00846 13 ARLVELETRLSFQEQALTELSEALADARLTGARNAELI 50 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666666666666666555555554443
No 374
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=45.35 E-value=2.2e+02 Score=25.29 Aligned_cols=33 Identities=24% Similarity=0.312 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhh
Q 045262 307 LEAEAEDLRKSNMKLQLENSQLARRLESTQMLE 339 (594)
Q Consensus 307 LE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~ 339 (594)
|..+.-........|+.-++++..||++|--.+
T Consensus 51 La~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~I 83 (89)
T PF13747_consen 51 LAQELDQAEARANRLEEANREVSRRLDSAIETI 83 (89)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444455556666666666666665444
No 375
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=45.35 E-value=3.7e+02 Score=27.86 Aligned_cols=14 Identities=43% Similarity=0.591 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHH
Q 045262 304 LKVLEAEAEDLRKS 317 (594)
Q Consensus 304 lkeLE~Ev~ELRr~ 317 (594)
+..|-.+|.+||+.
T Consensus 90 y~~Lk~~in~~R~e 103 (230)
T PF10146_consen 90 YKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHH
Confidence 45566666666655
No 376
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=45.02 E-value=3.7e+02 Score=27.82 Aligned_cols=22 Identities=23% Similarity=0.287 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHH
Q 045262 303 RLKVLEAEAEDLRKSNMKLQLE 324 (594)
Q Consensus 303 ~lkeLE~Ev~ELRr~NkeLQ~E 324 (594)
.+..+..|+.-|+....++-.+
T Consensus 82 ~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 82 KIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666655443
No 377
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=44.88 E-value=3.9e+02 Score=27.95 Aligned_cols=14 Identities=43% Similarity=0.676 Sum_probs=8.0
Q ss_pred HhhHHHHHHHHHHh
Q 045262 360 EENTSLSKEVEKLH 373 (594)
Q Consensus 360 ~~NedL~kQVEqLq 373 (594)
+....|.+||..||
T Consensus 284 ~~~~~l~~ei~~L~ 297 (297)
T PF02841_consen 284 EEAEKLQKEIQDLQ 297 (297)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC
Confidence 44455666666654
No 378
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=44.78 E-value=2.2e+02 Score=25.09 Aligned_cols=26 Identities=35% Similarity=0.564 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhHHHHHHhhHhHHhh
Q 045262 307 LEAEAEDLRKSNMKLQLENSQLARRL 332 (594)
Q Consensus 307 LE~Ev~ELRr~NkeLQ~EKreL~~KL 332 (594)
|..++..|++....|+.+|.-|..++
T Consensus 73 l~~~i~~l~~ke~~l~~en~~L~~~~ 98 (100)
T PF01486_consen 73 LMEQIEELKKKERELEEENNQLRQKI 98 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555555555555554443
No 379
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=44.77 E-value=2.3e+02 Score=25.37 Aligned_cols=46 Identities=15% Similarity=0.247 Sum_probs=26.5
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 045262 240 DHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQE 285 (594)
Q Consensus 240 e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~ 285 (594)
+...+...|...|..+..+...+.......+..-..|+..+..+..
T Consensus 8 e~~~~~~~l~~kr~e~~~~~~~~~~~e~~L~~~e~~l~~~~~~f~~ 53 (126)
T PF13863_consen 8 EMFLVQLALDTKREEIERREEQLKQREEELEKKEQELEEDVIKFDK 53 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666666666666666666655555555555555543
No 380
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=44.63 E-value=1.8e+02 Score=26.35 Aligned_cols=40 Identities=33% Similarity=0.394 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 045262 220 LNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLK 259 (594)
Q Consensus 220 L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~Lq 259 (594)
|...+..|+.+-..|+.++.++.....++..+..-++.|.
T Consensus 4 l~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~ 43 (126)
T TIGR00293 4 LAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLK 43 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4444555666666666666666666666665555554443
No 381
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=44.62 E-value=3.4e+02 Score=28.15 Aligned_cols=18 Identities=39% Similarity=0.525 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 045262 246 SELEAAKTKIKLLKKKLR 263 (594)
Q Consensus 246 ~ELE~ar~kir~LqkKl~ 263 (594)
.+|+.|.++...|+++.+
T Consensus 172 ~~Le~~~~~~~al~Kq~e 189 (216)
T KOG1962|consen 172 KKLEKAQKKVDALKKQSE 189 (216)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445555555555555544
No 382
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=44.53 E-value=54 Score=29.94 Aligned_cols=68 Identities=32% Similarity=0.358 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-hhhH--H----------HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 045262 166 EQEVKNLKNMVQMLQDREKNLEVELLEYYGL-KEQE--T----------IVMELQNRLKLNNMEGRLLNLKIESLQADNR 232 (594)
Q Consensus 166 e~EI~~LR~lVeeLqERE~~LE~ELLEyy~L-KEQE--a----------~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~ 232 (594)
++|-+-||+-+-+|..--..|..||-.|... .+-+ + .-..|+-+|+....+|..|..+|-.||-||.
T Consensus 14 EEEa~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~~~~~~~g~~~~~~~~~l~~eLk~a~~qi~~Ls~kv~eLq~ENR 93 (96)
T PF11365_consen 14 EEEAELLRRKLSELEDENKQLTEELNKYKSKYGDLDSLAKLSEGGSPSGREAELQEELKLAREQINELSGKVMELQYENR 93 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCccccHHHHHHHHHHHHHHHHHhhHHHHHhhccc
Confidence 6788999999999999999999999998742 1111 1 1256888899989999999999999999886
Q ss_pred H
Q 045262 233 R 233 (594)
Q Consensus 233 R 233 (594)
.
T Consensus 94 v 94 (96)
T PF11365_consen 94 V 94 (96)
T ss_pred c
Confidence 3
No 383
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=44.44 E-value=1.7e+02 Score=26.08 Aligned_cols=28 Identities=25% Similarity=0.427 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 045262 299 SRLQRLKVLEAEAEDLRKSNMKLQLENS 326 (594)
Q Consensus 299 kKlq~lkeLE~Ev~ELRr~NkeLQ~EKr 326 (594)
.-...+.=|-.||.||+-.|..|..+..
T Consensus 15 qAvdtI~LLqmEieELKekn~~L~~e~~ 42 (79)
T PRK15422 15 QAIDTITLLQMEIEELKEKNNSLSQEVQ 42 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566667777666666665533
No 384
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=44.30 E-value=5.7e+02 Score=30.81 Aligned_cols=11 Identities=9% Similarity=0.356 Sum_probs=4.5
Q ss_pred HHHHHHhhhcC
Q 045262 484 FFHKLRKLVRG 494 (594)
Q Consensus 484 Li~KLKKw~~g 494 (594)
|-+.+..|++.
T Consensus 736 Lr~~v~~~L~~ 746 (771)
T TIGR01069 736 LRKGVQELLKN 746 (771)
T ss_pred HHHHHHHHhcC
Confidence 33344444443
No 385
>PTZ00491 major vault protein; Provisional
Probab=44.17 E-value=3.4e+02 Score=33.26 Aligned_cols=50 Identities=26% Similarity=0.272 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 045262 179 LQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLE 235 (594)
Q Consensus 179 LqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq 235 (594)
.||-+.+=+++.+ |||+. -.||+|.-.-.++.+.-+.++-.||+++.-.+
T Consensus 663 sqEa~A~h~a~~~------eQea~-g~Lerqk~~d~~~aE~~r~~llel~a~s~ave 712 (850)
T PTZ00491 663 SQEAAARHQAELL------EQEAR-GRLERQKMHDKAKAEEQRTKLLELQAESAAVE 712 (850)
T ss_pred hHHHHHHHHHHHH------HHHhh-chhHHHhhhhHHHHHHHHHHHHHHHhHHHHHh
Confidence 4555666555554 46653 34444444444555556666666666665544
No 386
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=43.96 E-value=3.1e+02 Score=30.01 Aligned_cols=87 Identities=13% Similarity=0.237 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHH
Q 045262 220 LNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQS 299 (594)
Q Consensus 220 L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ek 299 (594)
+..+.+.|+.|-+.||+-...|..-.+|+. .+|.+......+.|.++..|++.+.+++... .. .
T Consensus 2 ~~eEW~eL~~efq~Lqethr~Y~qKleel~-------~lQ~~C~ssI~~QkkrLk~L~~sLk~~~~~~------~~---e 65 (330)
T PF07851_consen 2 CEEEWEELQKEFQELQETHRSYKQKLEELS-------KLQDKCSSSISHQKKRLKELKKSLKRCKKSL------SA---E 65 (330)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhccCC------Ch---h
Confidence 456677888888888888877777777665 4555555555666666777777666665431 01 1
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHH
Q 045262 300 RLQRLKVLEAEAEDLRKSNMKLQ 322 (594)
Q Consensus 300 Klq~lkeLE~Ev~ELRr~NkeLQ 322 (594)
-.+.+.+|+.++.+.+....+.+
T Consensus 66 ~~~~i~~L~~~Ik~r~~~l~DmE 88 (330)
T PF07851_consen 66 ERELIEKLEEDIKERRCQLFDME 88 (330)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHH
Confidence 12346677777766666555554
No 387
>PRK04325 hypothetical protein; Provisional
Probab=43.90 E-value=1.1e+02 Score=26.22 Aligned_cols=33 Identities=21% Similarity=0.137 Sum_probs=15.3
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 045262 203 VMELQNRLKLNNMEGRLLNLKIESLQADNRRLE 235 (594)
Q Consensus 203 v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq 235 (594)
|.+||.+|.--..-|+.|+..|..-+.+..+|+
T Consensus 11 i~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~ 43 (74)
T PRK04325 11 ITELEIQLAFQEDLIDGLNATVARQQQTLDLLQ 43 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444554444444444445444444444443333
No 388
>PRK02119 hypothetical protein; Provisional
Probab=43.83 E-value=1.2e+02 Score=26.01 Aligned_cols=32 Identities=16% Similarity=0.061 Sum_probs=13.5
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 045262 202 IVMELQNRLKLNNMEGRLLNLKIESLQADNRR 233 (594)
Q Consensus 202 ~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~R 233 (594)
.+.+||.+|.--..-|+.|+..|...+.+..+
T Consensus 10 Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~ 41 (73)
T PRK02119 10 RIAELEMKIAFQENLLEELNQALIEQQFVIDK 41 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433333
No 389
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=43.83 E-value=1.3e+02 Score=33.23 Aligned_cols=24 Identities=33% Similarity=0.400 Sum_probs=13.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 217 GRLLNLKIESLQADNRRLEAQVAD 240 (594)
Q Consensus 217 i~~L~~kI~sLE~En~RLq~qv~e 240 (594)
-..+..++..|+++.+.+..++..
T Consensus 39 ~r~~~~~~~~l~~erN~~sk~i~~ 62 (418)
T TIGR00414 39 RKKLLSEIEELQAKRNELSKQIGK 62 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455556666666666666654
No 390
>cd07599 BAR_Rvs167p The Bin/Amphiphysin/Rvs (BAR) domain of Saccharomyces cerevisiae Reduced viability upon starvation protein 167 and similar proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of fungal proteins with similarity to Saccharomyces cerevisiae Reduced viability upon starvation protein 167 (Rvs167p) and Schizosaccharomyces pombe Hob1 (homolog of Bin1). S. cerevisiae Rvs167p plays a role in regulation of the actin cytoskeleton, endocytosis, and sporulation. It forms a heterodimer with another BAR domain protein Rvs161p. Rvs161p and Rvs167p share common functions but are not interchangeable. Their BAR domains cannot be replaced with each other and the overexpression of one cannot suppress the mutant phenotypes of the other. Rvs167p also interacts with the GTPase activating protein (GAP) Gyp5p, which is involved in ER to Golgi vesicle trafficking. BAR domains fo
Probab=43.54 E-value=3.1e+02 Score=27.10 Aligned_cols=106 Identities=19% Similarity=0.213 Sum_probs=61.0
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc---hhhHHHHHHHHHHHH---hhhhhhHHHHHHHHH-HHHHHHHHH
Q 045262 163 DDCEQEVKNLKNMVQMLQDREKNLEVELLEYYGL---KEQETIVMELQNRLK---LNNMEGRLLNLKIES-LQADNRRLE 235 (594)
Q Consensus 163 ~d~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~L---KEQEa~v~ELe~~L~---~k~~Ei~~L~~kI~s-LE~En~RLq 235 (594)
.+.-..+..+...+++|+.+ ..-+.+..+...+ ++=-..+..+.+.++ -+....+.+..++.. ++.-.++=.
T Consensus 67 ~~~~~~~~~y~~~~~~l~~~-~~~~l~~i~~~V~~P~~~~~~~~~~i~k~IkKR~~k~lDyd~~~~k~~k~~~~k~~~~~ 145 (216)
T cd07599 67 ESTLARLSRYVKALEELKKE-LLEELEFFEERVILPAKELKKYIKKIRKTIKKRDHKKLDYDKLQNKLNKLLQKKKELSL 145 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCCCCh
Confidence 33456788899999998654 3223333332221 111122444444444 355566666666666 443322223
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045262 236 AQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQN 269 (594)
Q Consensus 236 ~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~ 269 (594)
.+-....++.++|+.|+.+...|...++.+.-+-
T Consensus 146 kd~~kl~kae~~l~~a~~~y~~lN~~Lk~eLP~l 179 (216)
T cd07599 146 KDEKQLAKLERKLEEAKEEYEALNELLKSELPKL 179 (216)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4456667778888888888888888887766443
No 391
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=43.41 E-value=3.3e+02 Score=30.72 Aligned_cols=100 Identities=14% Similarity=0.188 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHH
Q 045262 251 AKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLAR 330 (594)
Q Consensus 251 ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~ 330 (594)
..-+...++++.+.+.++.++++..|.-.+--+..-. +|.+.-|.. +.-+..|..
T Consensus 325 ~~~R~~~~~rR~~~~l~k~~~rl~il~g~~~~i~~id----------------------~vi~~ir~s---~~ak~~L~~ 379 (445)
T cd00187 325 LDHRLEVYTRRKEYELGKAEARLHILEGLLKAILNID----------------------EVINLIRSS---DEAKKALIE 379 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH----------------------HHHHHHhcc---HHHHHHHHH
Confidence 3445566677777777777777666655544433210 233333332 233334444
Q ss_pred hh---hhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q 045262 331 RL---ESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHAD 375 (594)
Q Consensus 331 KL---~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQVEqLq~d 375 (594)
+| .-.+.++..+++.+.-.=...+...|..+.+.|.++++.|++-
T Consensus 380 ~l~~~~~~~~qa~~IL~m~L~~LT~~e~~kL~~E~~~l~~ei~~l~~~ 427 (445)
T cd00187 380 ELEKLGFSEIQADAILDMRLRRLTKLEREKLLKELKELEAEIEDLEKI 427 (445)
T ss_pred HHHhcCCCHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 33 3333344333333322222455677777788888888877653
No 392
>KOG2417 consensus Predicted G-protein coupled receptor [Signal transduction mechanisms]
Probab=43.40 E-value=1.9e+02 Score=32.50 Aligned_cols=13 Identities=31% Similarity=0.427 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHH
Q 045262 272 QILAVQERVTKLQ 284 (594)
Q Consensus 272 qi~~Lkq~v~~Lq 284 (594)
+|..++|+|..|+
T Consensus 250 ~i~~lq~EV~~LE 262 (462)
T KOG2417|consen 250 DIKLLQQEVEPLE 262 (462)
T ss_pred hHHHHHHHHHHHH
Confidence 5555555555554
No 393
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=43.36 E-value=2.7e+02 Score=25.72 Aligned_cols=38 Identities=26% Similarity=0.318 Sum_probs=22.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 045262 215 MEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAK 252 (594)
Q Consensus 215 ~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar 252 (594)
.+...|...+..|+.....|...+.++..+...|+..+
T Consensus 13 ~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~ 50 (140)
T PRK03947 13 AQLQALQAQIEALQQQLEELQASINELDTAKETLEELK 50 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34445555566666666666666666666666555544
No 394
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=42.54 E-value=98 Score=27.30 Aligned_cols=34 Identities=26% Similarity=0.394 Sum_probs=19.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 045262 216 EGRLLNLKIESLQADNRRLEAQVADHAKTVSELE 249 (594)
Q Consensus 216 Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE 249 (594)
+-..+..++..|+++.+.+..++....+..++.+
T Consensus 37 ~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~ 70 (108)
T PF02403_consen 37 ERRELQQELEELRAERNELSKEIGKLKKAGEDAE 70 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHH
Confidence 3445566666666666666666666555433333
No 395
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=42.35 E-value=2.1e+02 Score=26.99 Aligned_cols=28 Identities=21% Similarity=0.273 Sum_probs=14.9
Q ss_pred HHHHHHHHHhHHHHHHhhHhHHhhhhhh
Q 045262 309 AEAEDLRKSNMKLQLENSQLARRLESTQ 336 (594)
Q Consensus 309 ~Ev~ELRr~NkeLQ~EKreL~~KL~sAe 336 (594)
..+.++|+.+.+|++---.+.++++...
T Consensus 72 ~rl~~~r~r~~~L~hR~l~v~~~~eilr 99 (141)
T PF13874_consen 72 ARLEEARRRHQELSHRLLRVLRKQEILR 99 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555555555443
No 396
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=42.28 E-value=3.3e+02 Score=26.32 Aligned_cols=54 Identities=15% Similarity=0.051 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045262 216 EGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQN 269 (594)
Q Consensus 216 Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~ 269 (594)
.++.....+......+..+..++........+-+.+...++....+....+.+-
T Consensus 27 ~~~~a~~~~~~~~~~l~~~~~qL~~l~~~a~~~~~~Q~~Lr~~~~~~~~~l~~r 80 (135)
T TIGR03495 27 DLERANRVLKAQQAELASKANQLIVLLALAKRNEEAQAQLRQQLAQARALLAQR 80 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444433333434444444333333333333
No 397
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins. F-BAR domains are dimerization modules that bind and bend membranes and are found in proteins involved in membrane dynamics and actin reorganization. Saccharomyces cerevisiae Rgd1 is a GTPase activating protein (GAP) with activity towards Rho3p and Rho4p, which are involved in bud growth and cytokinesis, respectively. At low pH, S. cerevisiae Rgd1 is required for cell survival and the activation of the protein kinase C pathway, which is important in cell integrity and the maintenance of cell shape. It contains an N-terminal F-BAR domain and a C-terminal Rho GAP domain. The F-BAR domain of S. cerevisiae Rgd1 binds to phosphoinositides and plays an important role in the localization of the protein to the bud tip/neck during the cell cycle. F-BAR domains form banana-shaped dimers with a positively-charged concave surface that
Probab=42.19 E-value=3.9e+02 Score=27.23 Aligned_cols=141 Identities=16% Similarity=0.212 Sum_probs=66.2
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHH
Q 045262 237 QVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRK 316 (594)
Q Consensus 237 qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr 316 (594)
...+......+++.+|.+++.--.+++.....+-..+..-|++-..+- +|.+.++.-..-+ + ++..++-
T Consensus 91 ~~~eL~~l~~~~e~~RK~~ke~~~k~~k~~~~a~~~leKAK~~Y~~~c-~e~Ekar~~~~~~-~---------~~~~~k~ 159 (234)
T cd07652 91 MSDELSSLAKTVEKSRKSIKETGKRAEKKVQDAEAAAEKAKARYDSLA-DDLERVKTGDPGK-K---------LKFGLKG 159 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhccCCCc-c---------ccccccc
Confidence 334455556666666666666655555554444444433343333321 1111111110000 0 0111221
Q ss_pred HhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHHH
Q 045262 317 SNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHADKCAGVEELVYLKWINACLRYE 396 (594)
Q Consensus 317 ~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQVEqLq~dRfseVEELVYLRWVNACLR~E 396 (594)
.-.-.|+|+ ++..|.+.|...+.+. ++.++.+|++.. ...+..=+..+-+||.- ...||+-+
T Consensus 160 ~~~~~~~Ee-~~~~K~~~A~~~Y~~~---------v~~~n~~q~e~~------~~~~p~i~~~lq~li~e--~d~~l~~~ 221 (234)
T cd07652 160 NKSAAQHED-ELLRKVQAADQDYASK---------VNAAQALRQELL------SRHRPEAVKDLFDLILE--IDAALRLQ 221 (234)
T ss_pred hhhHHHhHH-HHHHHHHHHHHHHHHH---------HHHHHHHHHHHH------HHHhHHHHHHHHHHHHH--HhHHHHHH
Confidence 112224444 7778877776554321 122333443221 12333334455566665 47899999
Q ss_pred HhhcCCCCCc
Q 045262 397 LRNYQPPAGK 406 (594)
Q Consensus 397 Lrn~q~p~gk 406 (594)
|.+|..|..+
T Consensus 222 ~~~~~~~~e~ 231 (234)
T cd07652 222 YQKYALPNEL 231 (234)
T ss_pred HHHHhhhhHH
Confidence 9999887543
No 398
>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]
Probab=42.13 E-value=3.4e+02 Score=26.46 Aligned_cols=44 Identities=32% Similarity=0.360 Sum_probs=24.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 045262 216 EGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLK 259 (594)
Q Consensus 216 Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~Lq 259 (594)
+++.|...+.-++++..-|+.++..+.....++..+..=++.++
T Consensus 7 ~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk 50 (145)
T COG1730 7 ELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLK 50 (145)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555555556666666666666655555555444
No 399
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=42.12 E-value=7e+02 Score=30.11 Aligned_cols=9 Identities=22% Similarity=0.645 Sum_probs=3.9
Q ss_pred HHHHHHHHH
Q 045262 174 NMVQMLQDR 182 (594)
Q Consensus 174 ~lVeeLqER 182 (594)
.+++.|.++
T Consensus 431 aile~l~~~ 439 (782)
T PRK00409 431 SILEYLRKR 439 (782)
T ss_pred HHHHHHHHC
Confidence 344444443
No 400
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=41.77 E-value=1.2e+02 Score=30.88 Aligned_cols=47 Identities=21% Similarity=0.294 Sum_probs=24.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH------HHHhHHHHHHHHHHHHHHHHHH
Q 045262 215 MEGRLLNLKIESLQADNRRLEAQVA------DHAKTVSELEAAKTKIKLLKKK 261 (594)
Q Consensus 215 ~Ei~~L~~kI~sLE~En~RLq~qv~------e~~~v~~ELE~ar~kir~LqkK 261 (594)
.+.--+..+|+.++.+..||.+.+. +...+..+|...+.+|..++.+
T Consensus 132 ~~y~D~~arl~~l~~~~~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~ 184 (262)
T PF14257_consen 132 EQYVDLEARLKNLEAEEERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQ 184 (262)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666777777777765443 3344444444444444433333
No 401
>KOG4796 consensus RNA polymerase II elongation factor [Transcription]
Probab=41.71 E-value=1.8e+02 Score=33.96 Aligned_cols=85 Identities=18% Similarity=0.272 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-------HHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHH
Q 045262 231 NRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTE-------AEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQR 303 (594)
Q Consensus 231 n~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~-------a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~ 303 (594)
.+-++++-.+|..+-+.++.+..+++.|..+|+.. -++.+++| ++ |.+..++|+..-..-+|
T Consensus 507 k~dF~~eY~EYreLharve~vs~rF~~Lea~L~srls~gS~ey~~i~~qI---------~q--EYeki~~dp~y~eeK~R 575 (604)
T KOG4796|consen 507 KKDFEAEYDEYRELHARVETVSRRFRQLEAQLKSRLSPGSPEYKQIEKQI---------LQ--EYEKIRKDPNYMEEKQR 575 (604)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCcHHHHHHHH---------HH--HHHHhhcCccHHHHHHH
Confidence 44578899999999999999999999999999932 23444444 33 33344588888888899
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhh
Q 045262 304 LKVLEAEAEDLRKSNMKLQLENS 326 (594)
Q Consensus 304 lkeLE~Ev~ELRr~NkeLQ~EKr 326 (594)
+.-|=....-|++...+...+.+
T Consensus 576 ceYLhsKLaHIK~lI~efDk~~~ 598 (604)
T KOG4796|consen 576 CEYLHSKLAHIKTLIGEFDKQQR 598 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999888877665543
No 402
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=41.67 E-value=4.2e+02 Score=27.47 Aligned_cols=34 Identities=15% Similarity=0.118 Sum_probs=22.4
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 045262 293 IDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENS 326 (594)
Q Consensus 293 ~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKr 326 (594)
.-+..+.+...+...+.+...++..+...+.+..
T Consensus 180 ~Gp~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~ 213 (301)
T PF14362_consen 180 KGPRYKEKRAQLDAAQAELDTLQAQIDAAIAALD 213 (301)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3466677777777777777777776665555543
No 403
>PF10482 CtIP_N: Tumour-suppressor protein CtIP N-terminal domain; InterPro: IPR019518 CtIP is predominantly a nuclear protein that complexes with both BRCA1 and the BRCA1-associated RING domain protein (BARD1). At the protein level, CtIP expression varies with cell cycle progression in a pattern identical to that of BRCA1. Thus, the steady-state levels of CtIP polypeptides, which remain low in resting cells and G1 cycling cells, increase dramatically as Dividing cells traverse the G1/S boundary. CtIP can potentially modulate the functions ascribed to BRCA1 in transcriptional regulation, DNA repair, and/or cell cycle checkpoint control []. This N-terminal domain carries a coiled-coil region and is essential for homodimerisation of the protein []. The C-terminal domain is family CtIP_C and carries functionally important CxxC and RHR motifs, absence of which lead cells to grow slowly and show hypersensitivity to genotoxins [].
Probab=41.67 E-value=3.2e+02 Score=26.09 Aligned_cols=24 Identities=38% Similarity=0.450 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHH
Q 045262 301 LQRLKVLEAEAEDLRKSNMKLQLE 324 (594)
Q Consensus 301 lq~lkeLE~Ev~ELRr~NkeLQ~E 324 (594)
++.|-.|..|+.-|+.-|+.|..|
T Consensus 95 Lq~i~~L~nE~n~L~eEN~~L~eE 118 (120)
T PF10482_consen 95 LQHIFELTNEMNTLKEENKKLKEE 118 (120)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 455666777777777777766654
No 404
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=41.48 E-value=3e+02 Score=25.62 Aligned_cols=39 Identities=28% Similarity=0.320 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhh
Q 045262 295 PDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLE 333 (594)
Q Consensus 295 ~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~ 333 (594)
..+..|-+.|+.+|.|+.=|--.|.+|...-..|---|+
T Consensus 33 e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 33 EQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346667777888888888888777777655555544444
No 405
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=41.34 E-value=1.2e+02 Score=28.33 Aligned_cols=32 Identities=38% Similarity=0.531 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhh
Q 045262 304 LKVLEAEAEDLRKSNMKLQLENSQLARRLEST 335 (594)
Q Consensus 304 lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sA 335 (594)
+.+|-..|.+|=--|..|+.||..|-.+|+..
T Consensus 24 l~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 24 LGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555556666666666666666666666643
No 406
>PRK00736 hypothetical protein; Provisional
Probab=41.20 E-value=1.4e+02 Score=25.27 Aligned_cols=29 Identities=14% Similarity=0.033 Sum_probs=13.0
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Q 045262 203 VMELQNRLKLNNMEGRLLNLKIESLQADN 231 (594)
Q Consensus 203 v~ELe~~L~~k~~Ei~~L~~kI~sLE~En 231 (594)
|.+||-+|.--..-|+.|+..|..-+.+.
T Consensus 7 i~~LE~klafqe~tie~Ln~~v~~Qq~~i 35 (68)
T PRK00736 7 LTELEIRVAEQEKTIEELSDQLAEQWKTV 35 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444433
No 407
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=41.17 E-value=5.3e+02 Score=28.42 Aligned_cols=69 Identities=14% Similarity=0.265 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 045262 218 RLLNLKIESLQADNRRLEAQV----ADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQ 286 (594)
Q Consensus 218 ~~L~~kI~sLE~En~RLq~qv----~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~ 286 (594)
+--+..++.++.-+..+...+ ..+.++..++..+-.||.--.+-|....++..++...++.+++.++.+
T Consensus 216 kDWR~hleqm~~~~~~I~~~~~~~~~~L~kl~~~i~~~lekI~sREk~iN~qle~l~~eYr~~~~~ls~~~~~ 288 (359)
T PF10498_consen 216 KDWRSHLEQMKQHKKSIESALPETKSQLDKLQQDISKTLEKIESREKYINNQLEPLIQEYRSAQDELSEVQEK 288 (359)
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777766665444 344566777777888888888888888888888888888888877755
No 408
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=41.10 E-value=1.3e+02 Score=33.34 Aligned_cols=77 Identities=17% Similarity=0.287 Sum_probs=41.9
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 045262 163 DDCEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVA 239 (594)
Q Consensus 163 ~d~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~ 239 (594)
.+...++..|+..++.++++=.+|+..|..+..++.+-..-++...++..-......+..++..|+.+...|++++.
T Consensus 330 ~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~ 406 (451)
T PF03961_consen 330 PELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELE 406 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677888888888888888777777765555544322222233333333333334444444444444444444433
No 409
>PRK09343 prefoldin subunit beta; Provisional
Probab=41.02 E-value=3e+02 Score=25.51 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=17.7
Q ss_pred HHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 045262 188 VELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQAD 230 (594)
Q Consensus 188 ~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~E 230 (594)
.++-+|-.++.|-..+..-...|...-.|++.-..+++.|..+
T Consensus 11 ~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d 53 (121)
T PRK09343 11 AQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDD 53 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 3444444444443333333333333334444444444444444
No 410
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=40.53 E-value=9.4e+02 Score=31.14 Aligned_cols=18 Identities=11% Similarity=0.254 Sum_probs=8.5
Q ss_pred cccccccccccccChhhH
Q 045262 537 YRHSLDVQRLRSVNEDEI 554 (594)
Q Consensus 537 ~~~s~d~~~~~~~~~~~~ 554 (594)
.||--|||-+.---.|+|
T Consensus 1239 rr~q~nfqLiVITHDE~f 1256 (1294)
T KOG0962|consen 1239 RRRQRNFQLIVITHDEDF 1256 (1294)
T ss_pred HhhccCcceeeeehHHHH
Confidence 345555555443334444
No 411
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=40.52 E-value=40 Score=28.76 Aligned_cols=26 Identities=35% Similarity=0.364 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 217 GRLLNLKIESLQADNRRLEAQVADHA 242 (594)
Q Consensus 217 i~~L~~kI~sLE~En~RLq~qv~e~~ 242 (594)
|..|+.+|..||+|..||++++..-.
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~kK~ 52 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELAKKK 52 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45677888899999999988876543
No 412
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=40.45 E-value=1.9e+02 Score=26.80 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhh
Q 045262 350 ALNEMSQRLREENTSLSKEVEKLHA 374 (594)
Q Consensus 350 ~i~ee~~~LR~~NedL~kQVEqLq~ 374 (594)
++.+|++.|---|..|+|-|+.||.
T Consensus 44 k~eqE~dSL~FrN~QL~kRV~~LQ~ 68 (102)
T PF10205_consen 44 KLEQENDSLTFRNQQLTKRVEVLQE 68 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888889999999999884
No 413
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=40.40 E-value=1e+02 Score=25.05 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=17.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 214 NMEGRLLNLKIESLQADNRRLEAQVADHA 242 (594)
Q Consensus 214 ~~Ei~~L~~kI~sLE~En~RLq~qv~e~~ 242 (594)
...+..|..++..|+.+|..|..++..+.
T Consensus 25 k~~~~~Le~~~~~L~~en~~L~~~~~~L~ 53 (64)
T PF00170_consen 25 KQYIEELEEKVEELESENEELKKELEQLK 53 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666665544443
No 414
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms]
Probab=40.39 E-value=1.4e+02 Score=35.18 Aligned_cols=17 Identities=41% Similarity=0.321 Sum_probs=9.6
Q ss_pred hhhhHHHHHHHHHHHHH
Q 045262 214 NMEGRLLNLKIESLQAD 230 (594)
Q Consensus 214 ~~Ei~~L~~kI~sLE~E 230 (594)
+.||..++.+|+.|+.+
T Consensus 106 ~seI~~~n~kiEelk~~ 122 (907)
T KOG2264|consen 106 NSEIEEINTKIEELKRL 122 (907)
T ss_pred HhHHHHHHHHHHHHHHH
Confidence 45566666666555544
No 415
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=39.93 E-value=7.1e+02 Score=29.60 Aligned_cols=78 Identities=22% Similarity=0.213 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhh---hHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 045262 297 TQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLED---GEREALNEMSQRLREENTSLSKEVEKLH 373 (594)
Q Consensus 297 ~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~---~ev~~i~ee~~~LR~~NedL~kQVEqLq 373 (594)
++.|-|+|.++-..|.+..-...-|-..|..+..+|.-...-+-....+ |.-+.+...++.|| +-+.++|..+.
T Consensus 391 Lq~K~q~I~~frqlv~e~QeqIr~LiK~Nsaakt~L~q~~~E~~~~~~~kl~P~~~~V~~~s~~l~---~~ie~E~~~f~ 467 (632)
T PF14817_consen 391 LQAKWQRILDFRQLVSEKQEQIRALIKGNSAAKTQLEQSPAEAQEFVQRKLVPQFEAVAPQSQELR---DCIEREVRAFQ 467 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhChHHHHHHHhcccCCcHHHHHHHHHHHH---HHHHHHHHhcc
Confidence 4444444444444444444444444444444444443332222111111 22233445555554 34556665555
Q ss_pred hhhc
Q 045262 374 ADKC 377 (594)
Q Consensus 374 ~dRf 377 (594)
.--+
T Consensus 468 ~~~l 471 (632)
T PF14817_consen 468 AIPL 471 (632)
T ss_pred cccH
Confidence 4433
No 416
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=39.70 E-value=1.1e+02 Score=34.94 Aligned_cols=15 Identities=7% Similarity=0.166 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHH
Q 045262 250 AAKTKIKLLKKKLRT 264 (594)
Q Consensus 250 ~ar~kir~LqkKl~~ 264 (594)
.+..+..+|++||..
T Consensus 73 eqQ~kasELEKqLaa 87 (475)
T PRK13729 73 EMQVTAAQMQKQYEE 87 (475)
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444433
No 417
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=39.38 E-value=65 Score=27.06 Aligned_cols=31 Identities=29% Similarity=0.353 Sum_probs=24.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 045262 215 MEGRLLNLKIESLQADNRRLEAQVADHAKTV 245 (594)
Q Consensus 215 ~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~ 245 (594)
.-|+.|...|..|++|..|+++.+..-.+.+
T Consensus 21 lSv~EL~~RIa~L~aEI~R~~~~~~~K~a~r 51 (59)
T PF06698_consen 21 LSVEELEERIALLEAEIARLEAAIAKKSASR 51 (59)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999998887655544
No 418
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=39.23 E-value=1.4e+02 Score=27.49 Aligned_cols=34 Identities=32% Similarity=0.538 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhh
Q 045262 304 LKVLEAEAEDLRKSNMKLQLENSQLARRLESTQM 337 (594)
Q Consensus 304 lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~ 337 (594)
+.+|-..|.+|=--|.+|+.||..|-.+|.-.+.
T Consensus 24 ~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 24 LEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5666666777777788888888888777776654
No 419
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=38.94 E-value=2.9e+02 Score=26.88 Aligned_cols=62 Identities=23% Similarity=0.292 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 045262 220 LNLKIESLQADNRRLEAQVADHAKTVS-----ELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQE 285 (594)
Q Consensus 220 L~~kI~sLE~En~RLq~qv~e~~~v~~-----ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~ 285 (594)
+-.++..+++..+.+..|........+ +......++..|++++.. ...++..||.|..+++.
T Consensus 123 li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~~lk~el~~----~~~~~~~LkkQ~~~l~~ 189 (192)
T PF05529_consen 123 LIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIEKLKKELEK----KEKEIEALKKQSEGLQK 189 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHh
Confidence 333444444444444444433332222 233334445555544444 55566777777777664
No 420
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=38.90 E-value=4.4e+02 Score=29.94 Aligned_cols=73 Identities=18% Similarity=0.166 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---c-------hhhHHHHHHHHHHHHhhhhhhHHH--------------H
Q 045262 166 EQEVKNLKNMVQMLQDREKNLEVELLEYYG---L-------KEQETIVMELQNRLKLNNMEGRLL--------------N 221 (594)
Q Consensus 166 e~EI~~LR~lVeeLqERE~~LE~ELLEyy~---L-------KEQEa~v~ELe~~L~~k~~Ei~~L--------------~ 221 (594)
..-|...+.-|..-++|=..-...|++|-. + .-|-..|..||.+|....+++..| .
T Consensus 241 ~D~v~~Ae~ev~~Ae~rl~~Ar~aL~~fRn~~gvlDP~~~a~~~~~lI~~Le~qLa~~~aeL~~L~~~~~p~sPqV~~l~ 320 (434)
T PRK15178 241 KERILWLENDVKSAQENLGAARLELLKIQHIQKDIDPKETITAIYQLIAGFETQLAEAKAEYAQLMVNGLDQNPLIPRLS 320 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCchhHHH
Confidence 344666666667777777777777777652 1 112233566666666555555544 3
Q ss_pred HHHHHHHHHHHHHHHHH
Q 045262 222 LKIESLQADNRRLEAQV 238 (594)
Q Consensus 222 ~kI~sLE~En~RLq~qv 238 (594)
.+|..|+.+...+++.+
T Consensus 321 ~rI~aLe~QIa~er~kl 337 (434)
T PRK15178 321 AKIKVLEKQIGEQRNRL 337 (434)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 44555555555444444
No 421
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=38.74 E-value=7.3e+02 Score=29.36 Aligned_cols=32 Identities=16% Similarity=0.063 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhhhcch
Q 045262 348 REALNEMSQRLREENTSLSKEVEKLHADKCAG 379 (594)
Q Consensus 348 v~~i~ee~~~LR~~NedL~kQVEqLq~dRfse 379 (594)
...+..+.+..|.-|+.|....++++......
T Consensus 372 ~~~L~R~~~~~~~lY~~lL~r~~e~~i~~a~~ 403 (726)
T PRK09841 372 VLRLSRDVEAGRAVYLQLLNRQQELSISKSSA 403 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 34566677778888888888888877665543
No 422
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=38.54 E-value=1e+02 Score=25.40 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHhhh
Q 045262 351 LNEMSQRLREENTSLSKEVEKLHAD 375 (594)
Q Consensus 351 i~ee~~~LR~~NedL~kQVEqLq~d 375 (594)
+..++..|+.+|..|-.+++-+|+.
T Consensus 27 a~~rl~~l~~EN~~Lr~eL~~~r~~ 51 (52)
T PF12808_consen 27 ARKRLSKLEGENRLLRAELERLRSR 51 (52)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 5677889999999999999998874
No 423
>PRK11578 macrolide transporter subunit MacA; Provisional
Probab=38.52 E-value=3.2e+02 Score=28.98 Aligned_cols=27 Identities=19% Similarity=0.294 Sum_probs=12.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 045262 233 RLEAQVADHAKTVSELEAAKTKIKLLK 259 (594)
Q Consensus 233 RLq~qv~e~~~v~~ELE~ar~kir~Lq 259 (594)
|.+...........+++.++..+...+
T Consensus 131 r~~~L~~~g~is~~~~~~~~~~~~~~~ 157 (370)
T PRK11578 131 RQQRLAKTQAVSQQDLDTAATELAVKQ 157 (370)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 333333344444555555554444433
No 424
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=38.16 E-value=64 Score=33.57 Aligned_cols=35 Identities=31% Similarity=0.362 Sum_probs=20.5
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 045262 203 VMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQ 237 (594)
Q Consensus 203 v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~q 237 (594)
+.|||.+|..-..++..|..+|++|+++|-+|=+.
T Consensus 95 n~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEK 129 (248)
T PF08172_consen 95 NAELEEELRKQQQTISSLRREVESLRADNVKLYEK 129 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444456666666777777777666543
No 425
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=37.91 E-value=5.6e+02 Score=27.77 Aligned_cols=75 Identities=24% Similarity=0.313 Sum_probs=45.1
Q ss_pred HHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh-----------HHHHHHHHHHHHHHHH
Q 045262 191 LEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAK-----------TVSELEAAKTKIKLLK 259 (594)
Q Consensus 191 LEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~-----------v~~ELE~ar~kir~Lq 259 (594)
.-...-+-+|+.|+-+|. -+-++|...|..|.+.-.+|..|..+... -.-|.....+.|+.|+
T Consensus 83 q~~ks~~Q~e~~v~a~e~------~~~rll~d~i~nLk~se~~lkqQ~~~a~RrE~ilv~rlA~kEQEmqe~~sqi~~lK 156 (330)
T KOG2991|consen 83 QLRKSWKQYEAYVQALEG------KYTRLLSDDITNLKESEEKLKQQQQEAARRENILVMRLATKEQEMQECTSQIQYLK 156 (330)
T ss_pred HHHHHHHHHHHHHHHhcC------cccchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333445667788887765 47778888888888887887766554321 1124445556666666
Q ss_pred HHHHHHHHHhHH
Q 045262 260 KKLRTEAEQNRE 271 (594)
Q Consensus 260 kKl~~~a~q~K~ 271 (594)
.+.+--+-|.+.
T Consensus 157 ~qq~Ps~~qlR~ 168 (330)
T KOG2991|consen 157 QQQQPSVAQLRS 168 (330)
T ss_pred HhhCcHHHHHHH
Confidence 555444444433
No 426
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=37.74 E-value=3.1e+02 Score=24.83 Aligned_cols=30 Identities=30% Similarity=0.543 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHhHHHHHHhhHhHHhhhhhh
Q 045262 307 LEAEAEDLRKSNMKLQLENSQLARRLESTQ 336 (594)
Q Consensus 307 LE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe 336 (594)
.|..|.+|...|..|..|+..|-.+|+++.
T Consensus 47 wek~v~~L~~e~~~l~~E~e~L~~~l~~e~ 76 (87)
T PF12709_consen 47 WEKKVDELENENKALKRENEQLKKKLDTER 76 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555666666655555555443
No 427
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=37.72 E-value=5.6e+02 Score=27.75 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=17.5
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHH
Q 045262 241 HAKTVSELEAAKTKIKLLKKKLR 263 (594)
Q Consensus 241 ~~~v~~ELE~ar~kir~LqkKl~ 263 (594)
..++..+|+..+.|++++|..|-
T Consensus 179 F~rlK~ele~tk~Klee~Qnels 201 (330)
T KOG2991|consen 179 FLRLKGELEQTKDKLEEAQNELS 201 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Confidence 45667788888888888887764
No 428
>PRK02119 hypothetical protein; Provisional
Probab=37.68 E-value=2.5e+02 Score=24.19 Aligned_cols=30 Identities=13% Similarity=0.110 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 045262 217 GRLLNLKIESLQADNRRLEAQVADHAKTVS 246 (594)
Q Consensus 217 i~~L~~kI~sLE~En~RLq~qv~e~~~v~~ 246 (594)
+..+..+|..||....=.+.-+.++..++.
T Consensus 4 ~~~~e~Ri~~LE~rla~QE~tie~LN~~v~ 33 (73)
T PRK02119 4 QQNLENRIAELEMKIAFQENLLEELNQALI 33 (73)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444433
No 429
>KOG2607 consensus CDK5 activator-binding protein [Signal transduction mechanisms]
Probab=37.34 E-value=7e+02 Score=28.73 Aligned_cols=102 Identities=23% Similarity=0.128 Sum_probs=62.2
Q ss_pred HHHHHHhhhhhhHH-HHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 045262 206 LQNRLKLNNMEGRL-LNLKIESLQADNRRLE-AQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKL 283 (594)
Q Consensus 206 Le~~L~~k~~Ei~~-L~~kI~sLE~En~RLq-~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~L 283 (594)
++-+=.+-+...+. ++.-+.+||--.+.|. -|+.++..+...=-++-.=+.+||+|.+....=..-+-++++.++..+
T Consensus 386 ~~l~pail~~~tee~~~t~~~slE~iiq~ls~~qlqhlf~i~~sP~yvd~v~e~Lqqk~k~~~~l~l~~elm~q~q~eal 465 (505)
T KOG2607|consen 386 LYLVPAILNQRTEELRNTDTLSLEHIIQALSPMQLQHLFPITISPMYVDIVIELLQQKKKRDLILILNSELMLQRQVEAL 465 (505)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhccCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444 5555678888888777 556666666655555555667777776655443333444445555444
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 045262 284 QEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLEN 325 (594)
Q Consensus 284 q~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EK 325 (594)
+. .+.+|++..||=....+||.+.
T Consensus 466 Ee------------------~~~levkL~elle~tr~lqk~I 489 (505)
T KOG2607|consen 466 EE------------------KKHLEVKLRELLEDTRRLQKEI 489 (505)
T ss_pred HH------------------HHhcchHHHHHHHHHHHHHHHH
Confidence 43 3668888888888888888763
No 430
>PRK12705 hypothetical protein; Provisional
Probab=37.20 E-value=7.1e+02 Score=28.81 Aligned_cols=10 Identities=30% Similarity=0.056 Sum_probs=5.7
Q ss_pred Ccccchhhhh
Q 045262 564 SDLVSSDAYK 573 (594)
Q Consensus 564 ~~~g~~~~~k 573 (594)
+..|+.++|-
T Consensus 442 ~~~gv~~~~a 451 (508)
T PRK12705 442 SFPGVEKAYA 451 (508)
T ss_pred cCcchHHHHH
Confidence 3446666664
No 431
>smart00338 BRLZ basic region leucin zipper.
Probab=37.19 E-value=1e+02 Score=25.10 Aligned_cols=26 Identities=35% Similarity=0.486 Sum_probs=14.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 215 MEGRLLNLKIESLQADNRRLEAQVAD 240 (594)
Q Consensus 215 ~Ei~~L~~kI~sLE~En~RLq~qv~e 240 (594)
..+..|..++..|+.+|..|..++..
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~ 51 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIER 51 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555556666666666666555544
No 432
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=36.87 E-value=2.3e+02 Score=26.76 Aligned_cols=37 Identities=30% Similarity=0.371 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHHHH--HHHHHHHHHHHHhHHHHHHHHHHHH
Q 045262 216 EGRLLNLKIESLQAD--NRRLEAQVADHAKTVSELEAAKTKI 255 (594)
Q Consensus 216 Ei~~L~~kI~sLE~E--n~RLq~qv~e~~~v~~ELE~ar~ki 255 (594)
|++.+...|..++.. +..+..-+.+.. .+|+.+...+
T Consensus 75 ElE~~~~~i~~~~~~~e~~~~a~~~~~l~---~~Le~ae~~~ 113 (139)
T PF13935_consen 75 ELERAQQRIAELEQECENEDIALDVQKLR---VELEAAEKRI 113 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Confidence 444456666666654 555544443333 3666666666
No 433
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=36.66 E-value=4.8e+02 Score=26.71 Aligned_cols=45 Identities=18% Similarity=0.251 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-hhhHHHHHHHHHH
Q 045262 165 CEQEVKNLKNMVQMLQDREKNLEVELLEYYGL-KEQETIVMELQNR 209 (594)
Q Consensus 165 ~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~L-KEQEa~v~ELe~~ 209 (594)
.+.-|..++.-+...+.+...|..++-+...- .+.-.+|.++|.-
T Consensus 7 ~d~~~~~~~~e~~~~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~ 52 (207)
T PF05010_consen 7 LDAAIKKVQEEVAEKEEEEQELKKKYEELHKENQEMRKIMEEYEKT 52 (207)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34445555555554444444444444433321 2333334444443
No 434
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=36.11 E-value=3.7e+02 Score=25.86 Aligned_cols=44 Identities=27% Similarity=0.297 Sum_probs=25.8
Q ss_pred hhHHHHHHHHHHHHHHHHHH---------HHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 045262 216 EGRLLNLKIESLQADNRRLE---------AQVADHAKTVSELEAAKTKIKLLKKKLR 263 (594)
Q Consensus 216 Ei~~L~~kI~sLE~En~RLq---------~qv~e~~~v~~ELE~ar~kir~LqkKl~ 263 (594)
-|..+=..|++|.+=--.|| .-.+....|+.||. ++-+|++...
T Consensus 13 li~~lFa~VSalKaAY~qLQ~Ah~PyDpd~I~aAD~~vVsEL~----~Ls~LK~~y~ 65 (131)
T PF04859_consen 13 LIAKLFATVSALKAAYAQLQQAHSPYDPDKIQAADEAVVSELR----RLSELKRRYR 65 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence 44555667777777666666 22345566777886 3444444443
No 435
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=36.06 E-value=4.4e+02 Score=26.01 Aligned_cols=60 Identities=17% Similarity=0.251 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q 045262 307 LEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHAD 375 (594)
Q Consensus 307 LE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQVEqLq~d 375 (594)
+..+...||..-.+|+...+.|-.-++-|+..++.+ .=-++.|...-.++...+|.++..
T Consensus 96 ~re~E~qLr~rRD~LErrl~~l~~tierAE~l~sqi---------~vvl~yL~~dl~~v~~~~e~~~~~ 155 (159)
T PF05384_consen 96 LREREKQLRERRDELERRLRNLEETIERAENLVSQI---------GVVLNYLSGDLQQVSEQIEDAQQK 155 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHhhHHHHHHHHHHHHHh
Confidence 334444556666666666666666666666655421 111356666667777788877754
No 436
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=35.90 E-value=78 Score=27.54 Aligned_cols=61 Identities=16% Similarity=0.190 Sum_probs=40.3
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHH
Q 045262 161 EKDDCEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKI 224 (594)
Q Consensus 161 e~~d~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI 224 (594)
+..|..+++..||..++..+.-=..|.+ =-+...||+..+..|+.++..+..-+..|...+
T Consensus 22 ~~kd~~~~~~~lk~Klq~ar~~i~~lpg---i~~s~eeq~~~i~~Le~~i~~k~~~L~~~~~~~ 82 (83)
T PF07544_consen 22 SSKDLDTATGSLKHKLQKARAAIRELPG---IDRSVEEQEEEIEELEEQIRKKREVLQKFKERV 82 (83)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhCCC---ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455677777777776665544333333 124557888888888888888887777766543
No 437
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=35.66 E-value=2.5e+02 Score=23.19 Aligned_cols=66 Identities=30% Similarity=0.349 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 045262 306 VLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLH 373 (594)
Q Consensus 306 eLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQVEqLq 373 (594)
+++.|+.-|.+....++.+..-+..||..-.=....+ ...|+.-++....+...-+.|...++.|+
T Consensus 1 D~~~E~~rL~Kel~kl~~~i~~~~~kL~n~~F~~kAP--~eVve~er~kl~~~~~~~~~l~~~l~~Lk 66 (66)
T PF10458_consen 1 DVEAEIERLEKELEKLEKEIERLEKKLSNENFVEKAP--EEVVEKEREKLEELEEELEKLEEALEQLK 66 (66)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHCSTTHHHHS---CCHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccCC--HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3556666666666666666666666655433211111 12334444455555555666666666653
No 438
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1). In addition to being a positional candidate for autism, cortactin-binding protein 2 is expressed at highest levels in the brain in humans. Towards the C-terminal end of this protein are a series of proline-rich regions which are likely to be the points of interaction with the SH3 domain of cortactin. The human protein has six associated ankyrin repeat domains (IPR002110 from INTERPRO) towards the C terminus of the protein which act as protein-protein interaction domains []. Filip1 controls the start of neocortical cell migration from the ventricular zone by acting through a filamin-A/F-actin axis. It may be able to induce the degradation of Filamin A [, ].
Probab=35.54 E-value=5e+02 Score=26.53 Aligned_cols=110 Identities=17% Similarity=0.200 Sum_probs=69.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045262 165 CEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKT 244 (594)
Q Consensus 165 ~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v 244 (594)
++.=|..|..+|..-++=-.+|-.+|+.-- +-+-.+|.+|+.+-..-..-...-..-...||-|..||+.
T Consensus 79 ~~~pl~~Le~l~~~qk~~q~Rm~~qL~~aE--~rhrr~i~eLe~EKrkh~~~~aqgDD~t~lLEkEReRLkq-------- 148 (192)
T PF09727_consen 79 YENPLAELEKLMEHQKKMQRRMLEQLAAAE--KRHRRTIQELEEEKRKHAEDMAQGDDFTNLLEKERERLKQ-------- 148 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHH--------
Confidence 455677777777766665556666655321 1233457777776554444444444446678888888764
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 045262 245 VSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQ 286 (594)
Q Consensus 245 ~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~ 286 (594)
+||.-|+..+-+.+..++...+.+++..-+|+-|..|-.+
T Consensus 149 --~lE~Ek~~~~~~EkE~~K~~~~l~eE~~k~K~~~l~Lv~E 188 (192)
T PF09727_consen 149 --QLEQEKAQQKKLEKEHKKLVSQLEEERTKLKSFVLMLVKE 188 (192)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666677777777777777777777777776543
No 439
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=35.38 E-value=4e+02 Score=28.46 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=22.1
Q ss_pred hhHHHHHHHHHHhhhhcchhhHHHHH-HHHHHHHHHHH
Q 045262 361 ENTSLSKEVEKLHADKCAGVEELVYL-KWINACLRYEL 397 (594)
Q Consensus 361 ~NedL~kQVEqLq~dRfseVEELVYL-RWVNACLR~EL 397 (594)
.+.-+.-++--|--+--.+|-=+.|| -|.=+|.-..|
T Consensus 196 ~~n~~p~~l~~l~~~~~~~Is~~~~lt~~~~~c~~~dl 233 (292)
T KOG4005|consen 196 SCNPLPTLLDMLGVDEEFDISRLEELTESLLACITADL 233 (292)
T ss_pred ccCCcHHHHHHHccchhhhHHHHHHHHHHHHHHhhhcc
Confidence 34444455555555555566666666 48889976554
No 440
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=34.88 E-value=3.3e+02 Score=24.29 Aligned_cols=13 Identities=46% Similarity=0.647 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHH
Q 045262 272 QILAVQERVTKLQ 284 (594)
Q Consensus 272 qi~~Lkq~v~~Lq 284 (594)
+|..|.++|+.|+
T Consensus 67 ~Id~Ie~~V~~LE 79 (99)
T PF10046_consen 67 QIDQIEEQVTELE 79 (99)
T ss_pred HHHHHHHHHHHHH
Confidence 4444444444444
No 441
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=34.86 E-value=6.5e+02 Score=30.27 Aligned_cols=109 Identities=19% Similarity=0.302 Sum_probs=65.2
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh-----------HH
Q 045262 203 VMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQN-----------RE 271 (594)
Q Consensus 203 v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~-----------K~ 271 (594)
+|..=+++..-..++..|+.++..++.+.+..+..-..+.....+|..+|.++..-..-++.-.+++ ..
T Consensus 65 ~Pr~~~ev~~l~~ea~~L~~~~~~v~~~~~~~e~~t~~s~~~L~~ld~vK~rm~~a~~~L~EA~~w~~l~~~v~~~~~~~ 144 (766)
T PF10191_consen 65 VPRVLREVDRLRQEAASLQEQMASVQEEIKAVEQDTAQSMAQLAELDSVKSRMEAARETLQEADNWSTLSAEVDDLFESG 144 (766)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC
Confidence 4555556666667777777777777777777776666667777777777777766665555444433 12
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHH
Q 045262 272 QILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAE 312 (594)
Q Consensus 272 qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ 312 (594)
.+..+.+++..++.- ......-++-+.|.+.+..|+...+
T Consensus 145 d~~~~a~~l~~m~~s-L~~l~~~pd~~~r~~~le~l~nrLE 184 (766)
T PF10191_consen 145 DIAKIADRLAEMQRS-LAVLQDVPDYEERRQQLEALKNRLE 184 (766)
T ss_pred CHHHHHHHHHHHHHH-HHHHcCCCchhHHHHHHHHHHHHHH
Confidence 344455555555432 2233444555666666666654443
No 442
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.74 E-value=8.5e+02 Score=28.94 Aligned_cols=110 Identities=18% Similarity=0.264 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhh-----hhHHH----------------HHH
Q 045262 165 CEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNM-----EGRLL----------------NLK 223 (594)
Q Consensus 165 ~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~-----Ei~~L----------------~~k 223 (594)
...|+--||++..+++ +++|+++--.. +....|.+|..+|-.+-+ +-+|- ..+
T Consensus 241 ~~~e~~llr~t~~~~e---~riEtqkqtl~---ardesIkkLlEmLq~kgmg~~~~~~df~~~~~~a~~~~h~r~~~er~ 314 (654)
T KOG4809|consen 241 TKEEQFLLRSTDPSGE---QRIETQKQTLD---ARDESIKKLLEMLQRKGMGRSNQPRDFTKANLSAHEMAHMRMKVERI 314 (654)
T ss_pred HHHHHHHHHhcCchHH---HHHHHHHhhhh---hHHHHHHHHHHHHHHhhcccccchhhHHHHHHhHHHHHhhhchHHHH
Confidence 3456777777776664 55666665433 334446666666654321 11111 123
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHH
Q 045262 224 IESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLR---TEAEQNREQILAVQERVTKLQEQ 286 (594)
Q Consensus 224 I~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~---~~a~q~K~qi~~Lkq~v~~Lq~~ 286 (594)
|+.|-....| .-.-..++++--+..++.|..+|. .+.....+++.-||+..+.|.+.
T Consensus 315 IerLkeqr~r------derE~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~ 374 (654)
T KOG4809|consen 315 IERLKEQRER------DERERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASA 374 (654)
T ss_pred HHHhcchhhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4433333222 222233444444444444444333 23344456778888888888765
No 443
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=34.37 E-value=65 Score=26.33 Aligned_cols=26 Identities=31% Similarity=0.542 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHhh
Q 045262 349 EALNEMSQRLREENTSLSKEVEKLHA 374 (594)
Q Consensus 349 ~~i~ee~~~LR~~NedL~kQVEqLq~ 374 (594)
+.+..+...++..|++|..+++.|++
T Consensus 27 ~~l~~~i~~l~~e~~~L~~ei~~l~~ 52 (80)
T PF04977_consen 27 AELQKEIEELKKENEELKEEIERLKN 52 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34455555666666666666666644
No 444
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=34.26 E-value=7.6e+02 Score=28.24 Aligned_cols=33 Identities=30% Similarity=0.368 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhh
Q 045262 307 LEAEAEDLRKSNMKLQLENSQLARRLESTQMLE 339 (594)
Q Consensus 307 LE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~ 339 (594)
.|.+..+|-+.-...|.--++|+.+-.+++...
T Consensus 198 ieQ~~~~la~r~~a~q~r~~ela~r~aa~Qq~~ 230 (499)
T COG4372 198 IEQEAQNLATRANAAQARTEELARRAAAAQQTA 230 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666665555556666666666655555433
No 445
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=34.20 E-value=3e+02 Score=23.61 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=13.1
Q ss_pred HHHHHHHHHhHHHHHHhhHhHHhhhhhhh
Q 045262 309 AEAEDLRKSNMKLQLENSQLARRLESTQM 337 (594)
Q Consensus 309 ~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~ 337 (594)
.-|.-||..+++++.+..+|..+++.++.
T Consensus 33 ~~IKKLr~~~~e~e~~~~~l~~~~~~~e~ 61 (74)
T PF12329_consen 33 NTIKKLRAKIKELEKQIKELKKKLEELEK 61 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444433
No 446
>PF12001 DUF3496: Domain of unknown function (DUF3496); InterPro: IPR021885 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 110 amino acids in length.
Probab=33.98 E-value=4e+02 Score=25.01 Aligned_cols=69 Identities=17% Similarity=0.227 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHH-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 045262 200 ETIVMELQNRLK-LNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNRE 271 (594)
Q Consensus 200 Ea~v~ELe~~L~-~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~ 271 (594)
|-.|.+||.+|. +|+++-+....+ ||.=.+---+++.--..+-.+|..+..++.+..-|+-.+.+|++-
T Consensus 6 ElrIkdLeselsk~Ktsq~d~~~~e---LEkYkqly~eElk~r~SLs~kL~ktnerLaevstkLl~Ekeq~rs 75 (111)
T PF12001_consen 6 ELRIKDLESELSKMKTSQEDSNKTE---LEKYKQLYLEELKLRKSLSNKLNKTNERLAEVSTKLLVEKEQNRS 75 (111)
T ss_pred HHHHHHHHHHHHHhHhHhhhhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhccc
Confidence 445566666665 343444442222 333333344555555555666777777776666666666655543
No 447
>COG4396 Mu-like prophage host-nuclease inhibitor protein Gam [General function prediction only]
Probab=33.96 E-value=2.1e+02 Score=28.24 Aligned_cols=59 Identities=25% Similarity=0.389 Sum_probs=45.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----HHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 045262 215 MEGRLLNLKIESLQADNRRLEAQVADHAKTVS-----ELEAAKTKIKLLKKKLRTEAEQNREQI 273 (594)
Q Consensus 215 ~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~-----ELE~ar~kir~LqkKl~~~a~q~K~qi 273 (594)
.|+-.+-+.|.-||-|..||+.++.+--++.+ +++..+.+|.-|++.++.--+-++-++
T Consensus 18 eeV~~~Ir~iGDlqRE~~RLeTemnDk~aai~e~Yapq~~~lk~EI~~L~k~vq~yCeanrDEL 81 (170)
T COG4396 18 EEVTAFIRQIGDLQREVKRLETEMNDKKAAIEEEYAPQAAPLKAEIMSLTKRVQAYCEANRDEL 81 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchHhHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 46777788899999999999977766555544 567788888888888887777776665
No 448
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=33.95 E-value=3.5e+02 Score=31.10 Aligned_cols=22 Identities=14% Similarity=-0.055 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 045262 167 QEVKNLKNMVQMLQDREKNLEV 188 (594)
Q Consensus 167 ~EI~~LR~lVeeLqERE~~LE~ 188 (594)
-=|+.|+..|.+...+-.++|.
T Consensus 118 ItVedLWeaW~~Sev~nWT~e~ 139 (575)
T KOG4403|consen 118 ITVEDLWEAWKESEVHNWTNER 139 (575)
T ss_pred eeHHHHHHHHHhhhhhcchHHH
Confidence 3589999999999999888874
No 449
>KOG0837 consensus Transcriptional activator of the JUN family [Transcription]
Probab=33.89 E-value=1.5e+02 Score=31.68 Aligned_cols=30 Identities=33% Similarity=0.424 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhHh
Q 045262 299 SRLQRLKVLEAEAEDLRKSNMKLQLENSQL 328 (594)
Q Consensus 299 kKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL 328 (594)
+||+++..||..|..|+-.|-+|-.+-..|
T Consensus 224 rkLdrisrLEdkv~~lk~~n~~L~~~l~~l 253 (279)
T KOG0837|consen 224 RKLDRISRLEDKVKTLKIYNRDLASELSKL 253 (279)
T ss_pred HHHHHHHHHHhhhhhhhhhhhhHHHHHHHH
Confidence 466788889999998888888887765554
No 450
>PF15294 Leu_zip: Leucine zipper
Probab=33.64 E-value=6.4e+02 Score=27.18 Aligned_cols=224 Identities=19% Similarity=0.256 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhhhchhhHHHHHH--------HHHHHHhhhhhhHHHHHHHHHHHHHHH--HHHHHH
Q 045262 170 KNLKNMVQMLQD-REKNLEVELLEYYGLKEQETIVME--------LQNRLKLNNMEGRLLNLKIESLQADNR--RLEAQV 238 (594)
Q Consensus 170 ~~LR~lVeeLqE-RE~~LE~ELLEyy~LKEQEa~v~E--------Le~~L~~k~~Ei~~L~~kI~sLE~En~--RLq~qv 238 (594)
.+||.....+++ |+.+|- + +-|-.+|=.-++-. +|.+|. ++.-.-.|-.+.-.-++|.. +|+..+
T Consensus 8 ~~Lk~Vds~F~Dlk~srL~-e--~t~T~~EV~~~ldgL~~~v~~~vesEL~-N~~htn~lllrql~~qAek~~lkl~~di 83 (278)
T PF15294_consen 8 QHLKEVDSCFQDLKSSRLR-E--DTYTSDEVTEMLDGLQVVVKSEVESELI-NTSHTNVLLLRQLFSQAEKWYLKLQTDI 83 (278)
T ss_pred HHHHHHHHhhhHHHHHHHH-H--HhhhHHHHHHHHHHHHHHHHHHHHHHHH-hHHHhHHHHHHHHHHHHHHHHHHhcccH
Confidence 578888788888 888887 3 46666663333333 333332 22222233333444456666 333222
Q ss_pred HHHH-----hHHHHHHHHHHHHHH------HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHH
Q 045262 239 ADHA-----KTVSELEAAKTKIKL------LKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVL 307 (594)
Q Consensus 239 ~e~~-----~v~~ELE~ar~kir~------LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeL 307 (594)
.+.. .-++++|.+-.-..- -.-|+....+ .+.+.+|...+..|+.+. ++--.+++.+
T Consensus 84 selEn~eLLe~i~~~E~~~~~~~~~~~~~~~~~KL~pl~e--~g~~~ll~kEi~rLq~EN----------~kLk~rl~~l 151 (278)
T PF15294_consen 84 SELENRELLEQIAEFEKQEFTSSFKPNQETSKPKLEPLNE--SGGSELLNKEIDRLQEEN----------EKLKERLKSL 151 (278)
T ss_pred HHHHHHHHHHHHHHHHHhhhcccCCccccccccccccccc--cchHHHHHHHHHHHHHHH----------HHHHHHHHHH
Confidence 2211 111111111111110 0001111111 133455666666666442 2233446667
Q ss_pred HHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHH----HhhHHHHHHHHHHhhhhcchhhHH
Q 045262 308 EAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLR----EENTSLSKEVEKLHADKCAGVEEL 383 (594)
Q Consensus 308 E~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR----~~NedL~kQVEqLq~dRfseVEEL 383 (594)
|..+..+=+-...|+.+-.+|-.-................+..+..-+..++ .+-.++..+.+.|..+
T Consensus 152 e~~at~~l~Ek~kl~~~L~~lq~~~~~~~~k~~~~~~~q~l~dLE~k~a~lK~e~ek~~~d~~~~~k~L~e~-------- 223 (278)
T PF15294_consen 152 EKQATSALDEKSKLEAQLKELQDEQGDQKGKKDLSFKAQDLSDLENKMAALKSELEKALQDKESQQKALEET-------- 223 (278)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
Confidence 7666666666666666666664411111111111112222222322333332 2233444444444332
Q ss_pred HHHHHHHHHHHHHHhhcCCCCCcchhhhccccCCcCcHHHH
Q 045262 384 VYLKWINACLRYELRNYQPPAGKTVARDLSKTLSPNSEEKA 424 (594)
Q Consensus 384 VYLRWVNACLR~ELrn~q~p~gk~sA~DLsKslSP~SqekA 424 (594)
|-+| .|+|-+.|+| -...-..|.|=++|.++=+.
T Consensus 224 -----L~~~-KhelL~~Qeq-L~~aekeLekKfqqT~ay~N 257 (278)
T PF15294_consen 224 -----LQSC-KHELLRVQEQ-LSLAEKELEKKFQQTAAYRN 257 (278)
T ss_pred -----HHHH-HHHHHhcchh-hhcchhhHHHHhCccHHHHH
Confidence 4577 7999999988 33333566777777665433
No 451
>PF15030 DUF4527: Protein of unknown function (DUF4527)
Probab=33.51 E-value=4e+02 Score=28.48 Aligned_cols=50 Identities=24% Similarity=0.382 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 218 RLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAE 267 (594)
Q Consensus 218 ~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~ 267 (594)
+.++..|..|.-+...|+-|+.+...+-.||.+++.+-.-|+.+++....
T Consensus 12 ed~rL~v~~LhHQvlTLqcQLRDQ~~ahreLQas~dEa~~L~~~L~~kl~ 61 (277)
T PF15030_consen 12 EDLRLRVQQLHHQVLTLQCQLRDQGSAHRELQASRDEATRLQDELQGKLE 61 (277)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44677788888888888888888888888888888887777776665443
No 452
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=33.45 E-value=1e+02 Score=25.34 Aligned_cols=37 Identities=24% Similarity=0.458 Sum_probs=21.0
Q ss_pred HHHHHHHHHhhh----hhhHHHHHHHHHHHHHHHHHHHHHH
Q 045262 203 VMELQNRLKLNN----MEGRLLNLKIESLQADNRRLEAQVA 239 (594)
Q Consensus 203 v~ELe~~L~~k~----~Ei~~L~~kI~sLE~En~RLq~qv~ 239 (594)
+.||+++|++.- .+-.-....|+-|+.||..|.+++.
T Consensus 6 l~ELe~klkaerE~R~~d~~~a~~rl~~l~~EN~~Lr~eL~ 46 (52)
T PF12808_consen 6 LEELERKLKAEREARSLDRSAARKRLSKLEGENRLLRAELE 46 (52)
T ss_pred HHHHHHHHHHhHHhccCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 445555554332 2233456667777777777776654
No 453
>PLN02678 seryl-tRNA synthetase
Probab=33.31 E-value=2.4e+02 Score=31.94 Aligned_cols=15 Identities=7% Similarity=0.228 Sum_probs=7.3
Q ss_pred hHHHHHHHHHHhhhh
Q 045262 362 NTSLSKEVEKLHADK 376 (594)
Q Consensus 362 NedL~kQVEqLq~dR 376 (594)
..+|.+.+.-+.-+|
T Consensus 143 H~~Lg~~l~l~d~~~ 157 (448)
T PLN02678 143 HVDLVELLGIVDTER 157 (448)
T ss_pred HHHHHhhccCccchh
Confidence 445555555444443
No 454
>KOG4637 consensus Adaptor for phosphoinositide 3-kinase [Signal transduction mechanisms]
Probab=33.25 E-value=7.7e+02 Score=28.02 Aligned_cols=69 Identities=19% Similarity=0.156 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 045262 170 KNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSEL 248 (594)
Q Consensus 170 ~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~EL 248 (594)
..|+..-+.||+.+..++.---+|-.. -.|| ..|..-+.-|+.+|.-.|.+-..++....++.-+....
T Consensus 139 ~~~~~~~q~lq~~~~~~er~~~~y~~~------~qEl----q~k~t~~~afn~tikife~q~~~~e~~~ka~~d~~~~e 207 (464)
T KOG4637|consen 139 KKLREYHQQLQEKSLEYERLYEEYTRT------SQEL----QMKRTAIEAFNETIKIFEEQCGTQENLSKAYIDRFRRE 207 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH----HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 357777788888888877665555443 3333 34455667788888888888777777766666555544
No 455
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=33.22 E-value=3.6e+02 Score=24.17 Aligned_cols=20 Identities=35% Similarity=0.360 Sum_probs=7.9
Q ss_pred HHHHHHHHHhHHHHHHhhHh
Q 045262 309 AEAEDLRKSNMKLQLENSQL 328 (594)
Q Consensus 309 ~Ev~ELRr~NkeLQ~EKreL 328 (594)
.|+..|+.....|+.++..+
T Consensus 81 ~ei~~l~~~l~~l~~~~~k~ 100 (126)
T PF13863_consen 81 AEIKKLKAELEELKSEISKL 100 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33333333444444443333
No 456
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=33.10 E-value=6.2e+02 Score=26.88 Aligned_cols=25 Identities=4% Similarity=0.038 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHh
Q 045262 349 EALNEMSQRLREENTSLSKEVEKLH 373 (594)
Q Consensus 349 ~~i~ee~~~LR~~NedL~kQVEqLq 373 (594)
..+.-+....+..|+.+...+++++
T Consensus 281 ~~L~re~~~a~~~y~~~l~r~~~a~ 305 (362)
T TIGR01010 281 QRLVLQNELAQQQLKAALTSLQQTR 305 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666677777777777666
No 457
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=33.07 E-value=7.5e+02 Score=27.81 Aligned_cols=84 Identities=20% Similarity=0.150 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhh------hHHHHHHHHHHHHHHhhHHHHHHHHHHhhhh
Q 045262 303 RLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLED------GEREALNEMSQRLREENTSLSKEVEKLHADK 376 (594)
Q Consensus 303 ~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~------~ev~~i~ee~~~LR~~NedL~kQVEqLq~dR 376 (594)
+..-||..|.++... -|.|...|---|..+|-+....... +.++.....+..|-+..-.-.-|+|++-+.|
T Consensus 259 R~erLEeqlNd~~el---Hq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE~~~~Qq~~q~e~~~n~~ 335 (395)
T PF10267_consen 259 RYERLEEQLNDLTEL---HQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLEQQQQQQVVQLEGTENSR 335 (395)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccc
Confidence 344466666655433 3556666666666666544322111 1224455556666533344456778888777
Q ss_pred cchhhHHHHHHHHHHHH
Q 045262 377 CAGVEELVYLKWINACL 393 (594)
Q Consensus 377 fseVEELVYLRWVNACL 393 (594)
+. -+..+-+|-+|
T Consensus 336 ~r----~~l~k~inllL 348 (395)
T PF10267_consen 336 AR----ALLGKLINLLL 348 (395)
T ss_pred HH----HHHHHHHHHHH
Confidence 76 56777788877
No 458
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=32.98 E-value=5.2e+02 Score=25.95 Aligned_cols=36 Identities=17% Similarity=0.182 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhh
Q 045262 303 RLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQML 338 (594)
Q Consensus 303 ~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~ 338 (594)
.+..|...+.+|++...++.-.+..|.-|...|++.
T Consensus 114 ~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~ 149 (219)
T TIGR02977 114 TLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSR 149 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666777777777777777778888888888774
No 459
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=32.65 E-value=1.1e+03 Score=29.44 Aligned_cols=66 Identities=21% Similarity=0.080 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Q 045262 168 EVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRR 233 (594)
Q Consensus 168 EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~R 233 (594)
++..|...+..+......+..++-.+-.....-..+.+|...+.....+...+......++....+
T Consensus 217 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 282 (1047)
T PRK10246 217 QVQSLTASLQVLTDEEKQLLTAQQQQQQSLNWLTRLDELQQEASRRQQALQQALAAEEKAQPQLAA 282 (1047)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 344444444444444444443333333332222333333333333333333333333333333333
No 460
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=32.64 E-value=1e+03 Score=29.20 Aligned_cols=46 Identities=22% Similarity=0.193 Sum_probs=29.8
Q ss_pred hHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhH----HHHHHHHHHh
Q 045262 326 SQLARRLESTQMLEISVLEDGEREALNEMSQRLREENT----SLSKEVEKLH 373 (594)
Q Consensus 326 reL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~Ne----dL~kQVEqLq 373 (594)
.+|+-+|-+||..+..+. -.|..-.-|+..||-+|+ .|.+-|++|-
T Consensus 641 ~eL~~ql~~a~~t~a~l~--~~~~~~~gei~alrl~~eigpg~l~dav~rl~ 690 (828)
T PF04094_consen 641 AELVSQLAAAQSTLADLQ--RLVQDQAGEIAALRLTNEIGPGQLSDAVSRLE 690 (828)
T ss_pred hhHhhhhHHHHHHHHHHH--HhhhhhhhhHHHHHhhcccCcchhhhHHHHHH
Confidence 378999999998775321 111112345677888887 5777777763
No 461
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=32.64 E-value=98 Score=26.20 Aligned_cols=40 Identities=35% Similarity=0.454 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 045262 272 QILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLE 324 (594)
Q Consensus 272 qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~E 324 (594)
++..+.+-+.=||.+- .+.++.|=.||.-||+.|++|+++
T Consensus 4 qv~s~e~~i~FLq~eH-------------~~tL~~LH~EIe~Lq~~~~dL~~k 43 (60)
T PF14916_consen 4 QVQSLEKSILFLQQEH-------------AQTLKGLHAEIERLQKRNKDLTFK 43 (60)
T ss_pred HHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHhcccccee
Confidence 4555555566666442 246888999999999999999886
No 462
>PF11577 NEMO: NF-kappa-B essential modulator NEMO; InterPro: IPR021063 This entry represents a conserved domain found at the N-terminal of NF-kappa-B essential modulator (NEMO) and optineurin proteins. NEMO is a regulatory protein which is part of the IKK complex along with the catalytic IKKalpha and beta kinases. The IKK complex phosphorylates IkappaB targeting it for degradation which results in the release of NF-kappaB which initiates the inflammatory response, cell proliferation or cell differentiation []. NEMO activates the IKK complex's activity by associating with the unphosphorylated IKK kinase C termini. The core domain of NEMO is a dimer which binds to two fragments of IKK []. ; PDB: 3BRT_B 3BRV_D.
Probab=32.34 E-value=3.3e+02 Score=23.48 Aligned_cols=57 Identities=21% Similarity=0.296 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 045262 222 LKIESLQADNRRLEAQVADHAKTVS----ELEAAKTKIKLLKKKLRTEAEQNREQILAVQE 278 (594)
Q Consensus 222 ~kI~sLE~En~RLq~qv~e~~~v~~----ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq 278 (594)
..+..|=.||..|.+-+.+..-+.+ +|..|+.+.+.-+.-+......+|.-+..|+.
T Consensus 6 ~~l~~LL~EN~~LKealrQ~N~~Mker~e~l~~wqe~~~~e~~~~~~kf~Ear~lv~~L~~ 66 (68)
T PF11577_consen 6 QQLQELLQENQDLKEALRQNNQAMKERFEELLAWQEKQKEEREFLERKFQEARELVERLKE 66 (68)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4566777889999988887766554 67899999999888888888888888877654
No 463
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=32.14 E-value=5.8e+02 Score=31.53 Aligned_cols=67 Identities=22% Similarity=0.277 Sum_probs=45.7
Q ss_pred HHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhcchhhHH
Q 045262 311 AEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHADKCAGVEEL 383 (594)
Q Consensus 311 v~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQVEqLq~dRfseVEEL 383 (594)
+.-|-++|..+|.++.+|.-+|+.|+..+..+ ..-|..+.+.-+.+ .+...++|...+.|+.-||++
T Consensus 857 ~~~lE~~~s~~~~q~~~ll~qlq~~~~~iq~l--~~~v~~l~~~e~~~----k~~l~~le~~~~~~~k~ve~~ 923 (948)
T KOG4436|consen 857 IAKLETTNSSLQAQNTDLLEQLQVAELTIQTL--ERYVEQLLEHENKL----KRALQTLEDEDRARRKTVETL 923 (948)
T ss_pred ccccccchhhhHhhhhhhhhhhccccchhhHH--HHHhhhhhcchHHH----HHHHhcccchhHHHHhhHHHH
Confidence 55566789999999999999999998877532 11233333332333 356777888888888888775
No 464
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=31.94 E-value=2.9e+02 Score=26.78 Aligned_cols=11 Identities=18% Similarity=0.498 Sum_probs=4.6
Q ss_pred HHHHHHHHhhh
Q 045262 365 LSKEVEKLHAD 375 (594)
Q Consensus 365 L~kQVEqLq~d 375 (594)
|-.||+.||.+
T Consensus 121 ldeqi~~lkes 131 (155)
T PF06810_consen 121 LDEQIKALKES 131 (155)
T ss_pred HHHHHHHHHhc
Confidence 33444444433
No 465
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=31.89 E-value=2.7e+02 Score=26.41 Aligned_cols=30 Identities=27% Similarity=0.190 Sum_probs=15.8
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Q 045262 203 VMELQNRLKLNNMEGRLLNLKIESLQADNR 232 (594)
Q Consensus 203 v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~ 232 (594)
...||++|....-.|..|...|...+...+
T Consensus 29 ~~~LE~qL~~~~~~l~lLq~e~~~~e~~le 58 (160)
T PF13094_consen 29 KRALERQLAANLHQLELLQEEIEKEEAALE 58 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555555555554433
No 466
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=31.75 E-value=2.6e+02 Score=30.98 Aligned_cols=56 Identities=21% Similarity=0.322 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 045262 227 LQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTK 282 (594)
Q Consensus 227 LE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~ 282 (594)
+++|..+++++.+.+..-.+||..-+.|++.....|+...-..+.+|..|+.++..
T Consensus 223 ~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 223 REEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 44555555555555554445554444444444444444444444444444444433
No 467
>COG4985 ABC-type phosphate transport system, auxiliary component [Inorganic ion transport and metabolism]
Probab=31.75 E-value=4.2e+02 Score=28.29 Aligned_cols=55 Identities=29% Similarity=0.444 Sum_probs=31.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 045262 164 DCEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLE 235 (594)
Q Consensus 164 d~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq 235 (594)
++-+++.. -.++.+||.|=..-+ .|..|...+.+ -+|..++-.++.|.-+.+|||
T Consensus 152 ~ngq~l~G-d~l~~eLqkr~~~v~-------~l~~q~~k~~~---------~qv~~in~qlErLRL~krrlQ 206 (289)
T COG4985 152 SNGQELDG-DPLERELQKRLLEVE-------TLRDQVDKMVE---------QQVRVINSQLERLRLEKRRLQ 206 (289)
T ss_pred cCCCcccC-cHHHHHHHHHHHHHH-------HHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHh
Confidence 34555552 356677776644443 44444333332 356667777777777777776
No 468
>PF05769 DUF837: Protein of unknown function (DUF837); InterPro: IPR008555 This family consists of several eukaryotic proteins of unknown function. One of the family members (O02197 from SWISSPROT) is a circulating cathodic antigen (CCA) found in Schistosoma mansoni (Blood fluke) [].
Probab=31.67 E-value=5.4e+02 Score=25.71 Aligned_cols=83 Identities=23% Similarity=0.311 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHH------hhh--hhhHHHHHHHHHHHHHHHHHHHH
Q 045262 166 EQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLK------LNN--MEGRLLNLKIESLQADNRRLEAQ 237 (594)
Q Consensus 166 e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~------~k~--~Ei~~L~~kI~sLE~En~RLq~q 237 (594)
++=|..-+.+|.-|++++.....=+-+...|..|......-+..+. ... ..+..=+..|..|+.||.-|..-
T Consensus 6 ~~il~dak~L~~rL~~~d~~ad~Ll~qa~~l~~~i~sm~~y~eei~~l~~~~~~~~~~~l~~En~qi~~Lq~EN~eL~~~ 85 (181)
T PF05769_consen 6 EQILADAKRLVERLKDHDNAADSLLSQAEALNKQIESMRQYQEEIQELNELSKNRPRAGLQQENRQIRQLQQENRELRQS 85 (181)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHhhHHHHHHHHHHHHHHHH
Confidence 4456777888888888888888888888877777765543333322 111 11233356788899999999999
Q ss_pred HHHHHhHHHHH
Q 045262 238 VADHAKTVSEL 248 (594)
Q Consensus 238 v~e~~~v~~EL 248 (594)
+.+|..+.+-+
T Consensus 86 leEhq~alelI 96 (181)
T PF05769_consen 86 LEEHQSALELI 96 (181)
T ss_pred HHHHHHHHHHH
Confidence 98888776644
No 469
>COG1566 EmrA Multidrug resistance efflux pump [Defense mechanisms]
Probab=31.66 E-value=6.1e+02 Score=27.94 Aligned_cols=99 Identities=10% Similarity=0.157 Sum_probs=56.3
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHH-HHHHHHHHHHHHHHHHH
Q 045262 161 EKDDCEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNL-KIESLQADNRRLEAQVA 239 (594)
Q Consensus 161 e~~d~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~-kI~sLE~En~RLq~qv~ 239 (594)
++.++..-++.++.-+...+..=..|+.++-.+.. .|..-.- .+...+.+-.|.+.-..
T Consensus 85 D~~~y~~al~qAea~la~a~~~~~~~~a~~~~~~A--------------------~i~~a~a~~l~~a~~~~~R~~~L~~ 144 (352)
T COG1566 85 DPRDYRAALEQAEAALAAAEAQLRNLRAQLASAQA--------------------LIAQAEAQDLDQAQNELERRAELAQ 144 (352)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34456677777777776666655555555544432 2222222 35556666777777776
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 045262 240 DHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQER 279 (594)
Q Consensus 240 e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~ 279 (594)
...-..++++.++.-...-+..+..-..+.+.++..|...
T Consensus 145 ~g~vs~~~~~~a~~a~~~A~A~~~~a~~~~~~~~~~l~~~ 184 (352)
T COG1566 145 RGVVSREELDRARAALQAAEAALAAAQAAQKQNLALLESE 184 (352)
T ss_pred cCcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh
Confidence 7777788888888755544444443333333334333333
No 470
>KOG3819 consensus Uncharacterized conserved proteins (Hepatitis delta antigen-interacting protein A) [Function unknown]
Probab=31.36 E-value=2.1e+02 Score=32.83 Aligned_cols=125 Identities=23% Similarity=0.261 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 045262 166 EQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTV 245 (594)
Q Consensus 166 e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~ 245 (594)
.+||..|. -++|+.|=.+++.|=.- .|-.+--.+.+--++|-.--.||..|..- |+||+.+=.+..-+.
T Consensus 41 dee~~klq--kEel~rr~rr~e~er~s--lm~~~g~l~ndvnrrlQ~hl~eir~lK~~-------nqKlq~~nqElrdL~ 109 (513)
T KOG3819|consen 41 DEELLKLQ--KEELQRRLRRAEAERVS--LMLAHGGLMNDVNRRLQQHLGEIRGLKDA-------NQKLQQDNQELRDLC 109 (513)
T ss_pred HHHHHHHh--HHHHHHHHHHHHHHHHH--HHHHhcchhhhhHHHHHhhccccchHHHH-------HHHHHHHHHHHHhhh
Confidence 44666654 35666666666555221 22223333556556655555666655544 444444433333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHH
Q 045262 246 SELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKL 321 (594)
Q Consensus 246 ~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeL 321 (594)
-=|..-|-|=+.|.+.-++.-.+ ..-+.++.|++.+ |++.+||+.-.+|+|-|.+|
T Consensus 110 cfldddrqkgrk~arewqrfgr~---tS~~~~~eva~~~-----------------qKl~~LE~kqe~l~renlel 165 (513)
T KOG3819|consen 110 CFLDDDRQKGRKLAREWQRFGRQ---TSGAMLPEVAGYQ-----------------QKLYELENKQEELLRENLEL 165 (513)
T ss_pred hhcccchhhhHHHHHHHHHHhhh---hhhhhhHHHHHHH-----------------HHHHHHHHHHHHHhhhhhhH
Confidence 33333344444444444444422 2334444555544 34667777777777776655
No 471
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid. Cryoelectron microscopy indicates that VP5 is a trimer suggesting that there are 360 copies of VP5 per virion [].; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=31.21 E-value=9e+02 Score=28.19 Aligned_cols=19 Identities=26% Similarity=0.307 Sum_probs=10.5
Q ss_pred HHHHHHHHHHhHHHHHHhh
Q 045262 308 EAEAEDLRKSNMKLQLENS 326 (594)
Q Consensus 308 E~Ev~ELRr~NkeLQ~EKr 326 (594)
+.|-..|.+..+.||.|-+
T Consensus 157 ~~E~~~l~~L~~AL~kE~~ 175 (508)
T PF00901_consen 157 KEENKQLDRLARALQKESR 175 (508)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666543
No 472
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=30.64 E-value=3.2e+02 Score=22.98 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHH
Q 045262 223 KIESLQADNRRLEAQVADHAKTV 245 (594)
Q Consensus 223 kI~sLE~En~RLq~qv~e~~~v~ 245 (594)
+|..||....=++.-+.++..++
T Consensus 5 Ri~~LE~~la~qe~~ie~Ln~~v 27 (69)
T PF04102_consen 5 RIEELEIKLAFQEDTIEELNDVV 27 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444333334444444333
No 473
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=30.53 E-value=2.8e+02 Score=23.22 Aligned_cols=36 Identities=31% Similarity=0.398 Sum_probs=24.5
Q ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045262 208 NRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAK 243 (594)
Q Consensus 208 ~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~ 243 (594)
........++..+..++..++.||.+|+.++.....
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 24 HQTRQLNNELQKLQLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 344455667777777777778888887777766543
No 474
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=30.34 E-value=1.2e+02 Score=24.67 Aligned_cols=29 Identities=28% Similarity=0.323 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 045262 217 GRLLNLKIESLQADNRRLEAQVADHAKTV 245 (594)
Q Consensus 217 i~~L~~kI~sLE~En~RLq~qv~e~~~v~ 245 (594)
|.-|+..++.||.+-++||.-+..|-++.
T Consensus 1 i~aLrqQv~aL~~qv~~Lq~~fs~yKKa~ 29 (46)
T PF09006_consen 1 INALRQQVEALQGQVQRLQAAFSQYKKAE 29 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45688899999999999999998887763
No 475
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=30.32 E-value=3.8e+02 Score=27.85 Aligned_cols=34 Identities=18% Similarity=0.122 Sum_probs=14.0
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 045262 204 MELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQ 237 (594)
Q Consensus 204 ~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~q 237 (594)
..||+++...+.-.-.|...|..|+.|..+|+-+
T Consensus 43 ~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~ 76 (263)
T PRK10803 43 TQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQ 76 (263)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3444444433333333344444444444444433
No 476
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=30.31 E-value=3.2e+02 Score=22.69 Aligned_cols=58 Identities=21% Similarity=0.327 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHH
Q 045262 298 QSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVE 370 (594)
Q Consensus 298 ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQVE 370 (594)
+.|...+++++..+.|......+++.|-+.+- . ..-..+...+...|.+...|-++++
T Consensus 21 ~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p----~-----------s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 21 EQRKSLIREIERDLDEAEELLKQMELEVRSLP----P-----------SERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-----H-----------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----H-----------HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56778899999999999999999999977651 0 1112344455566666666666665
No 477
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=30.00 E-value=3.3e+02 Score=23.99 Aligned_cols=38 Identities=21% Similarity=0.156 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhh
Q 045262 302 QRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLE 339 (594)
Q Consensus 302 q~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~ 339 (594)
+.+.+|=.-+.|.+....++|.+-+-|+.||...+-.+
T Consensus 22 ~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~~~~~~~ 59 (72)
T COG2900 22 QTIEELNDALAEQQLVIDKLQAQLRLLTEKLKDLQPSA 59 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 56889999999999999999999999999998887654
No 478
>PRK10869 recombination and repair protein; Provisional
Probab=29.02 E-value=9.4e+02 Score=27.71 Aligned_cols=50 Identities=12% Similarity=0.228 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHHHHhhcCCCCCc
Q 045262 348 REALNEMSQRLREENTSLSKEVEKLHADKCAGVEELVYLKWINACLRYELRNYQPPAGK 406 (594)
Q Consensus 348 v~~i~ee~~~LR~~NedL~kQVEqLq~dRfseVEELVYLRWVNACLR~ELrn~q~p~gk 406 (594)
.+.+.++...++.....++.++=..+..-+...++. +-.+|....=|.++
T Consensus 343 l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~~---------v~~~L~~L~m~~a~ 392 (553)
T PRK10869 343 LETLALAVEKHHQQALETAQKLHQSRQRYAKELAQL---------ITESMHELSMPHGK 392 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHcCCCCcE
Confidence 344555556666666666655555554444444433 34455555555444
No 479
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=28.93 E-value=1.1e+03 Score=28.49 Aligned_cols=18 Identities=33% Similarity=0.436 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 045262 223 KIESLQADNRRLEAQVAD 240 (594)
Q Consensus 223 kI~sLE~En~RLq~qv~e 240 (594)
-|+.|+.+...++....+
T Consensus 521 li~~l~~~~~~~e~~~~~ 538 (782)
T PRK00409 521 LIASLEELERELEQKAEE 538 (782)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444433333
No 480
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=28.58 E-value=8e+02 Score=26.73 Aligned_cols=47 Identities=28% Similarity=0.331 Sum_probs=35.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhh
Q 045262 294 DPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEI 340 (594)
Q Consensus 294 d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~ 340 (594)
=+.+-.||+.|+.|=.++.+.-.....|...-.++..-|..-+...+
T Consensus 314 lP~lv~RL~tL~~lH~~a~~~~~~l~~le~~q~~l~~~l~~~~~~L~ 360 (388)
T PF04912_consen 314 LPSLVERLKTLKSLHEEAAEFSQTLSELESQQSDLQSQLKKWEELLN 360 (388)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888888888888888888888887777777666665555544
No 481
>KOG1850 consensus Myosin-like coiled-coil protein [Cytoskeleton]
Probab=28.55 E-value=8.6e+02 Score=27.13 Aligned_cols=119 Identities=18% Similarity=0.223 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcC----ChhH
Q 045262 222 LKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAI----DPDT 297 (594)
Q Consensus 222 ~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~----d~E~ 297 (594)
..|+.+--.-.-|..|+..|..--.||...=+|-.++=-+++.+.+..-..|..|.....+...+=+++-+. .-+-
T Consensus 208 ~~~e~~~~~e~qlK~ql~lY~aKyeefq~tl~KSNE~F~~fK~E~ekmtKk~kklEKE~l~wr~K~e~aNk~vL~la~ek 287 (391)
T KOG1850|consen 208 IMLEEMKQVEGQLKEQLALYMAKYEEFQTTLAKSNELFTKFKQEMEKMTKKIKKLEKETLIWRTKWENANKAVLQLAEEK 287 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence 334444444445667777777777777777777777777777777766666666666655555442211000 0011
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhh
Q 045262 298 QSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEI 340 (594)
Q Consensus 298 ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~ 340 (594)
..+-+.+.-|-..+.-|......||.+..+|..+|...++.++
T Consensus 288 t~~~k~~~~lq~kiq~LekLcRALq~ernel~~~~~~~e~~v~ 330 (391)
T KOG1850|consen 288 TVRDKEYETLQKKIQRLEKLCRALQTERNELNKKLEDLEAQVS 330 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcccc
Confidence 1122233445556666667777778887777777766666554
No 482
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=28.54 E-value=8.4e+02 Score=26.97 Aligned_cols=97 Identities=16% Similarity=0.185 Sum_probs=50.2
Q ss_pred hhhhHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHH
Q 045262 214 NMEGRLLNLKIESLQAD-NRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEA---EQNREQILAVQERVTKLQEQAHK 289 (594)
Q Consensus 214 ~~Ei~~L~~kI~sLE~E-n~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a---~q~K~qi~~Lkq~v~~Lq~~E~e 289 (594)
-.||-+--.+|+|=|.- |..|...+.++..+..+|..+|.+-+.++--+.... .....++..+||++. .+...
T Consensus 254 h~eit~~LEkI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemE---e~G~~ 330 (384)
T KOG0972|consen 254 HKEITKALEKIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEME---EQGAK 330 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH---Hhccc
Confidence 34454444555554433 556777777777777777777766666654333222 223334444444432 22222
Q ss_pred hhcCChhHHHHHHHHHHHHHHHHHH
Q 045262 290 AAAIDPDTQSRLQRLKVLEAEAEDL 314 (594)
Q Consensus 290 ~~~~d~E~ekKlq~lkeLE~Ev~EL 314 (594)
.+. -+-+.+=.|++.+|+.|-.+|
T Consensus 331 msD-GaplvkIkqavsKLk~et~~m 354 (384)
T KOG0972|consen 331 MSD-GAPLVKIKQAVSKLKEETQTM 354 (384)
T ss_pred ccC-CchHHHHHHHHHHHHHHHHhh
Confidence 222 234444446666666665544
No 483
>PRK14161 heat shock protein GrpE; Provisional
Probab=28.28 E-value=2.7e+02 Score=27.77 Aligned_cols=50 Identities=14% Similarity=0.270 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045262 218 RLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNR 270 (594)
Q Consensus 218 ~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K 270 (594)
+.+..-+++++++...|++++.++ ...+-++.+.+.-++|+..++..+.+
T Consensus 15 ~~~~~~~~~~~~ei~~l~~e~~el---kd~~lR~~AefeN~rkR~~ke~~~~~ 64 (178)
T PRK14161 15 DIAEEIVETANPEITALKAEIEEL---KDKLIRTTAEIDNTRKRLEKARDEAK 64 (178)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666655555555543 34455566666666666666555543
No 484
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=28.26 E-value=3.1e+02 Score=30.49 Aligned_cols=6 Identities=50% Similarity=0.833 Sum_probs=2.9
Q ss_pred CCcCcH
Q 045262 416 LSPNSE 421 (594)
Q Consensus 416 lSP~Sq 421 (594)
|.|.++
T Consensus 227 L~pTsE 232 (425)
T PRK05431 227 LIPTAE 232 (425)
T ss_pred EEeCCc
Confidence 445554
No 485
>cd00176 SPEC Spectrin repeats, found in several proteins involved in cytoskeletal structure; family members include spectrin, alpha-actinin and dystrophin; the spectrin repeat forms a three helix bundle with the second helix interrupted by proline in some sequences; the repeats are independent folding units; tandem repeats are found in differing numbers and arrange in an antiparallel manner to form dimers; the repeats are defined by a characteristic tryptophan (W) residue in helix A and a leucine (L) at the carboxyl end of helix C and separated by a linker of 5 residues; two copies of the repeat are present here
Probab=28.19 E-value=4.6e+02 Score=23.87 Aligned_cols=67 Identities=21% Similarity=0.160 Sum_probs=32.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 045262 295 PDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKL 372 (594)
Q Consensus 295 ~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQVEqL 372 (594)
+.++..++.++.|..++.........+...-..|...... .....+...+..+++....|...+..-
T Consensus 139 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------~~~~~~~~~l~~l~~~~~~l~~~~~~~ 205 (213)
T cd00176 139 ESVEELLKKHKELEEELEAHEPRLKSLNELAEELLEEGHP-----------DADEEIEEKLEELNERWEELLELAEER 205 (213)
T ss_pred HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHcCCC-----------CcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666666666666655444444444433333222111 111234455566666666666665543
No 486
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=28.18 E-value=1.3e+03 Score=29.19 Aligned_cols=83 Identities=17% Similarity=0.226 Sum_probs=60.1
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 045262 203 VMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTK 282 (594)
Q Consensus 203 v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~ 282 (594)
..+|..++..-...+..-...+.+++++...+++.+....-++.+++..-.++...--+++...+.++..+..|=+++..
T Consensus 478 ~~~l~~~~~~~k~~L~~~~~el~~~~ee~~~~~~~l~~~e~ii~~~~~se~~l~~~a~~l~~~~~~s~~d~s~l~~kld~ 557 (1041)
T KOG0243|consen 478 KELLKEEKEKLKSKLQNKNKELESLKEELQQAKATLKEEEEIISQQEKSEEKLVDRATKLRRSLEESQDDLSSLFEKLDR 557 (1041)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33455555555556666677778888888888888888887888777777777777778888888887777777776666
Q ss_pred HHH
Q 045262 283 LQE 285 (594)
Q Consensus 283 Lq~ 285 (594)
...
T Consensus 558 ~~~ 560 (1041)
T KOG0243|consen 558 KDR 560 (1041)
T ss_pred hhc
Confidence 554
No 487
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.79 E-value=6.5e+02 Score=28.09 Aligned_cols=57 Identities=19% Similarity=0.294 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 045262 231 NRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQA 287 (594)
Q Consensus 231 n~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E 287 (594)
..|.++++..+.+..+.|.+....++.=+++|....+..++|...|+....-|..+.
T Consensus 220 R~r~eeeme~~~aeq~slkRt~EeL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k~ 276 (365)
T KOG2391|consen 220 RRRREEEMERLQAEQESLKRTEEELNIGKQKLVAMKETLEQQLQSLQKNIDILKSKV 276 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 345666666666666666666666666666666555555555555555555555443
No 488
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=27.74 E-value=5e+02 Score=28.03 Aligned_cols=89 Identities=20% Similarity=0.294 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 045262 168 EVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSE 247 (594)
Q Consensus 168 EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~E 247 (594)
-+..|+.-+.+++|+=.+- | .....|.|+=..-.=+|+.|..++..||+...-|+.++.+ -..+
T Consensus 78 s~r~lk~~l~evEekyrkA---------M----v~naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~e---K~~e 141 (302)
T PF09738_consen 78 SLRDLKDSLAEVEEKYRKA---------M----VSNAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYRE---KIRE 141 (302)
T ss_pred cHHHHHHHHHHHHHHHHHH---------H----HHHhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 4555666666666552221 0 1234556666666679999999999999999888887753 3445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Q 045262 248 LEAAKTKIKLLKKKLRTEAEQNREQ 272 (594)
Q Consensus 248 LE~ar~kir~LqkKl~~~a~q~K~q 272 (594)
|++.|..+..|+.++.....+.++.
T Consensus 142 lEr~K~~~d~L~~e~~~Lre~L~~r 166 (302)
T PF09738_consen 142 LERQKRAHDSLREELDELREQLKQR 166 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777776666655555444
No 489
>PRK00106 hypothetical protein; Provisional
Probab=27.68 E-value=1e+03 Score=27.74 Aligned_cols=20 Identities=15% Similarity=0.121 Sum_probs=7.8
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 045262 296 DTQSRLQRLKVLEAEAEDLR 315 (594)
Q Consensus 296 E~ekKlq~lkeLE~Ev~ELR 315 (594)
+++.+.+.+...+.++.+++
T Consensus 126 eLe~kekeLe~reeeLee~~ 145 (535)
T PRK00106 126 TLESKEQSLTDKSKHIDERE 145 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444333333333333333
No 490
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=27.54 E-value=85 Score=29.64 Aligned_cols=31 Identities=32% Similarity=0.364 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 045262 166 EQEVKNLKNMVQMLQDREKNLEVELLEYYGL 196 (594)
Q Consensus 166 e~EI~~LR~lVeeLqERE~~LE~ELLEyy~L 196 (594)
.+||+-||..|.+|.+|-..||.|--=++.|
T Consensus 66 REEVe~Lk~qI~eL~er~~~Le~EN~lLk~~ 96 (123)
T KOG4797|consen 66 REEVEVLKEQIRELEERNSALERENSLLKTL 96 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6899999999999999999999875444333
No 491
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=27.40 E-value=52 Score=34.40 Aligned_cols=25 Identities=32% Similarity=0.385 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHH
Q 045262 222 LKIESLQADNRRLEAQVADHAKTVS 246 (594)
Q Consensus 222 ~kI~sLE~En~RLq~qv~e~~~v~~ 246 (594)
.||..||.|..+|++|+|.+..+.+
T Consensus 122 qKIsALEdELs~LRaQIA~IV~~qe 146 (253)
T PF05308_consen 122 QKISALEDELSRLRAQIAKIVAAQE 146 (253)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccc
Confidence 6899999999999999998776554
No 492
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=27.37 E-value=5.7e+02 Score=27.42 Aligned_cols=9 Identities=22% Similarity=0.346 Sum_probs=5.3
Q ss_pred CCccccccc
Q 045262 74 PSSCSVVSV 82 (594)
Q Consensus 74 ~~~~~~~~~ 82 (594)
...|.+-++
T Consensus 60 ~k~C~iG~g 68 (264)
T PF07246_consen 60 NKKCRIGSG 68 (264)
T ss_pred ccCcccCCc
Confidence 456776644
No 493
>PF02344 Myc-LZ: Myc leucine zipper domain; InterPro: IPR003327 This family consists of the leucine zipper dimerisation domain found in both cellular c-Myc proto-oncogenes and viral v-Myc oncogenes. Dimerisation via the leucine zipper motif with other basic helix-loop-helix-leucine zipper (b/HLH/lz) proteins is required for efficient DNA binding []. The Myc-Max dimer is a transactivating complex activating expression of growth related genes promoting cell proliferation. The dimerisation is facilitated via interdigitating leucine residues every 7th position of the alpha helix. Like charge repulsion of adjacent residues in this region preturbs the formation of homodimers with heterodimers being promoted by opposing charge attractions. It has been demonstrated that in transgenic mice the balance between oncogene-induced proliferation and apoptosis in a given tissue can be a critical determinant in the initiation and maintenance of the tumor [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1NKP_D 1A93_A 2A93_A.
Probab=27.30 E-value=1.3e+02 Score=22.70 Aligned_cols=27 Identities=22% Similarity=0.335 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhhh
Q 045262 350 ALNEMSQRLREENTSLSKEVEKLHADK 376 (594)
Q Consensus 350 ~i~ee~~~LR~~NedL~kQVEqLq~dR 376 (594)
++..+.+.||...+.|.--+|||++..
T Consensus 5 kL~sekeqLrrr~eqLK~kLeqlrnS~ 31 (32)
T PF02344_consen 5 KLISEKEQLRRRREQLKHKLEQLRNSC 31 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 455677889999999999999999864
No 494
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=27.26 E-value=4.5e+02 Score=26.85 Aligned_cols=15 Identities=33% Similarity=0.410 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHH
Q 045262 302 QRLKVLEAEAEDLRK 316 (594)
Q Consensus 302 q~lkeLE~Ev~ELRr 316 (594)
+.+..+|.|+.+|-.
T Consensus 100 ~t~s~veaEik~L~s 114 (201)
T KOG4603|consen 100 QTCSYVEAEIKELSS 114 (201)
T ss_pred HHHHHHHHHHHHHHH
Confidence 335555555555543
No 495
>KOG0992 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.14 E-value=1.1e+03 Score=27.85 Aligned_cols=53 Identities=17% Similarity=0.310 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhH
Q 045262 271 EQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLA 329 (594)
Q Consensus 271 ~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~ 329 (594)
.+++.+..++..|...-.. ++-.+.++++.++.-+.++...+-+|+.-|.++.
T Consensus 263 ~~~l~~ek~r~~lee~~~~------e~~e~rk~v~k~~~l~q~~~~~~~eL~K~kde~~ 315 (613)
T KOG0992|consen 263 GQNLALEKQRSRLEEQVAE------ETTEKRKAVKKRDDLIQSRKQVSFELEKAKDEIK 315 (613)
T ss_pred hhHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566666666666655332 4555678889999999999999999996655553
No 496
>PF05084 GRA6: Granule antigen protein (GRA6); InterPro: IPR008119 Toxoplasma gondii is an obligate intracellular apicomplexan protozoan parasite, with a complex lifestyle involving varied hosts []. It has two phases of growth: an intestinal phase in feline hosts, and an extra-intestinal phase in other mammals. Oocysts from infected cats develop into tachyzoites, and eventually, bradyzoites and zoitocysts in the extraintestinal host []. Transmission of the parasite occurs through contact with infected cats or raw/undercooked meat; in immunocompromised individuals, it can cause severe and often lethal toxoplasmosis. Acute infection in healthy humans can sometimes also cause tissue damage []. The protozoan utilises a variety of secretory and antigenic proteins to invade a host and gain access to the intracellular environment []. These originate from distinct organelles in the T. gondii cell termed micronemes, rhoptries, and dense granules. They are released at specific times during invasion to ensure the proteins are allocated to their correct target destinations []. Dense granule antigens (GRAs) are released from the T. gondii tachyzoite while still encapsulated in a host vacuole. Gra6, one of these moieties, is associated with the parasitophorous vacuole []. It possesses a hydrophobic central region flanked by two hydrophilic domains, and is present as a single copy gene in the Toxoplasma gondii genome []. Gra6 shares a similar function with Gra2, in that it is rapidly targeted to a network of membranous tubules that connect with the vacuolar membrane []. Indeed, these two proteins, together with Gra4, form a multimeric complex that stabilises the parasite within the vacuole.
Probab=26.96 E-value=1e+02 Score=31.03 Aligned_cols=46 Identities=24% Similarity=0.250 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHh-hcCCCCCCCCCCCCCCCCCCchhhhcccccc
Q 045262 18 VAFVFSLAGIFVVRL-RKKGSKPSLPPPSSGFSDHGSEFELGVRAQH 63 (594)
Q Consensus 18 ~ava~S~A~~~~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 63 (594)
+++|++||+++..-+ |+.|..|+.|.--...-+.|.+..-++..|.
T Consensus 157 ~VlA~~VA~L~~~F~RR~~rrsppepsgdgG~~~~G~~~~NGG~Egr 203 (215)
T PF05084_consen 157 VVLAVSVAMLTWFFLRRTGRRSPPEPSGDGGGNDAGNNAGNGGNEGR 203 (215)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCccccccCCCccccc
No 497
>PLN02320 seryl-tRNA synthetase
Probab=26.93 E-value=3e+02 Score=31.70 Aligned_cols=74 Identities=19% Similarity=0.062 Sum_probs=0.0
Q ss_pred HHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 045262 209 RLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKL 283 (594)
Q Consensus 209 ~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~L 283 (594)
+|.....+-..+..+++.|+++.+.+..++.. .....+.+..+.+.+.|+.++...-.+.++--..|.+.+..|
T Consensus 94 ~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~-~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~i 167 (502)
T PLN02320 94 LVLELYENMLALQKEVERLRAERNAVANKMKG-KLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSI 167 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
No 498
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=26.92 E-value=4.7e+02 Score=23.58 Aligned_cols=80 Identities=18% Similarity=0.204 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHH--HHHHHHHHHhHHHHH
Q 045262 200 ETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVS---ELEAAKTKIKLLK--KKLRTEAEQNREQIL 274 (594)
Q Consensus 200 Ea~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~---ELE~ar~kir~Lq--kKl~~~a~q~K~qi~ 274 (594)
|.-|.-||.-+.-.-.--..+......|..|.+-|+++|..+-.|.. |--..+.+++.|| - .+.+.+-.-++|.
T Consensus 2 EdkI~rLE~~~~g~l~~~~~~~~e~~~L~eEI~~Lr~qve~nPevtr~A~EN~rL~ee~rrl~~f~-~~gerE~l~~eis 80 (86)
T PF12711_consen 2 EDKIKRLEKLLDGKLPSESYLEEENEALKEEIQLLREQVEHNPEVTRFAMENIRLREELRRLQSFY-VEGEREMLLQEIS 80 (86)
T ss_pred chHHHHHHHHhcCCCCccchhHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHHHHH
Q ss_pred HHHHHH
Q 045262 275 AVQERV 280 (594)
Q Consensus 275 ~Lkq~v 280 (594)
.|+.++
T Consensus 81 ~L~~~l 86 (86)
T PF12711_consen 81 ELRDQL 86 (86)
T ss_pred HHHhhC
No 499
>PLN02320 seryl-tRNA synthetase
Probab=26.60 E-value=4e+02 Score=30.80 Aligned_cols=71 Identities=15% Similarity=0.121 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHH
Q 045262 232 RRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEA 311 (594)
Q Consensus 232 ~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev 311 (594)
..+-+.-.+...+..+++..|.+.+.+-++|.. ...+.+...|++++..|..+ +..||.++
T Consensus 93 d~l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~--~~~~~~~~~l~~~~k~lk~~-----------------i~~le~~~ 153 (502)
T PLN02320 93 ELVLELYENMLALQKEVERLRAERNAVANKMKG--KLEPSERQALVEEGKNLKEG-----------------LVTLEEDL 153 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhCCCCHHHHHHHHHHHHHH-----------------HHHHHHHH
Q ss_pred HHHHHHhHHH
Q 045262 312 EDLRKSNMKL 321 (594)
Q Consensus 312 ~ELRr~NkeL 321 (594)
.++.....++
T Consensus 154 ~~~~~~l~~~ 163 (502)
T PLN02320 154 VKLTDELQLE 163 (502)
T ss_pred HHHHHHHHHH
No 500
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=26.54 E-value=5.7e+02 Score=29.38 Aligned_cols=78 Identities=15% Similarity=0.216 Sum_probs=0.0
Q ss_pred HHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 188 VELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAE 267 (594)
Q Consensus 188 ~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~ 267 (594)
.++..++-||-....|--|=..|..|...++++...+..|+.-...++.++.+.. -+|+....+.|+||+.+..+..
T Consensus 419 ~~~~~L~~Ik~SprYvdrl~~~L~qk~~~~~k~~~~~~~l~~kr~e~~~e~~~l~---pkL~~l~~~Tr~Lq~~iE~~IS 495 (507)
T PF05600_consen 419 PRTQHLFMIKSSPRYVDRLVESLQQKLKQEEKLRRKREDLEEKRQEAQEEQQELE---PKLDALVERTRELQKQIEADIS 495 (507)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 045262 268 Q 268 (594)
Q Consensus 268 q 268 (594)
+
T Consensus 496 k 496 (507)
T PF05600_consen 496 K 496 (507)
T ss_pred H
Done!