Query 045262
Match_columns 594
No_of_seqs 84 out of 86
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 20:17:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045262.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045262hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v71_A Nuclear distribution pr 97.6 0.0078 2.7E-07 58.3 20.4 166 165-373 8-181 (189)
2 3na7_A HP0958; flagellar bioge 97.3 0.11 3.8E-06 51.1 24.2 73 190-262 7-83 (256)
3 1i84_S Smooth muscle myosin he 97.1 0.0021 7.3E-08 75.3 11.7 76 165-240 855-931 (1184)
4 2dfs_A Myosin-5A; myosin-V, in 96.8 0.035 1.2E-06 65.1 19.0 132 226-372 918-1049(1080)
5 2dfs_A Myosin-5A; myosin-V, in 96.8 0.049 1.7E-06 63.9 19.4 23 351-373 1021-1043(1080)
6 3na7_A HP0958; flagellar bioge 96.6 0.2 6.8E-06 49.3 19.9 40 196-239 3-42 (256)
7 3vkg_A Dynein heavy chain, cyt 96.5 0.44 1.5E-05 61.7 26.4 206 145-374 1885-2098(3245)
8 1c1g_A Tropomyosin; contractIl 96.3 0.64 2.2E-05 42.4 32.1 24 167-190 13-36 (284)
9 3vkg_A Dynein heavy chain, cyt 95.2 3.3 0.00011 54.0 26.6 84 298-383 2010-2096(3245)
10 3oja_B Anopheles plasmodium-re 95.0 0.19 6.5E-06 53.3 12.8 22 307-328 528-549 (597)
11 2fxo_A Myosin heavy chain, car 94.5 2.6 8.9E-05 37.8 17.4 24 305-328 86-109 (129)
12 3oja_A Leucine-rich immune mol 93.7 3.7 0.00012 42.8 18.7 38 302-339 435-472 (487)
13 3oja_B Anopheles plasmodium-re 93.3 1.5 5.2E-05 46.5 15.2 33 305-337 547-579 (597)
14 3o0z_A RHO-associated protein 92.4 4.4 0.00015 38.7 15.5 103 166-268 47-158 (168)
15 3o0z_A RHO-associated protein 91.5 10 0.00034 36.3 18.9 37 304-340 99-135 (168)
16 2fxo_A Myosin heavy chain, car 91.0 8.3 0.00028 34.5 16.1 18 358-375 109-126 (129)
17 3ol1_A Vimentin; structural ge 91.0 7.9 0.00027 34.4 14.8 30 215-244 20-49 (119)
18 1ik9_A DNA repair protein XRCC 90.8 1.6 5.5E-05 42.6 10.9 58 218-281 142-199 (213)
19 3hnw_A Uncharacterized protein 90.5 3.3 0.00011 38.0 12.1 94 217-331 34-132 (138)
20 3ghg_A Fibrinogen alpha chain; 89.0 2.7 9.2E-05 46.3 11.8 81 297-390 126-206 (562)
21 3ol1_A Vimentin; structural ge 87.6 12 0.0004 33.3 13.3 36 160-195 13-48 (119)
22 3swk_A Vimentin; cytoskeleton, 86.3 7.3 0.00025 33.0 10.6 25 305-329 45-69 (86)
23 2v66_B Nuclear distribution pr 86.1 15 0.00051 32.9 13.0 73 247-343 18-90 (111)
24 3oja_A Leucine-rich immune mol 85.6 17 0.00059 37.8 15.4 14 161-174 322-335 (487)
25 3mq9_A Bone marrow stromal ant 85.3 19 0.00066 37.2 15.5 84 235-324 379-465 (471)
26 3u1c_A Tropomyosin alpha-1 cha 85.3 18 0.0006 31.3 13.9 63 202-264 31-97 (101)
27 2v71_A Nuclear distribution pr 84.9 29 0.001 33.6 20.0 63 166-230 23-85 (189)
28 1x79_B RAB GTPase binding effe 84.5 22 0.00074 32.0 13.2 26 223-248 7-32 (112)
29 1deq_A Fibrinogen (alpha chain 83.5 43 0.0015 35.7 17.0 27 360-386 179-205 (390)
30 2jee_A YIIU; FTSZ, septum, coi 83.4 13 0.00044 31.7 10.8 41 203-243 8-48 (81)
31 2efr_A General control protein 83.1 31 0.0011 32.4 22.9 69 303-373 85-153 (155)
32 2v4h_A NF-kappa-B essential mo 82.5 24 0.00084 31.6 12.6 47 271-327 62-108 (110)
33 2no2_A HIP-I, huntingtin-inter 80.6 16 0.00055 32.2 10.8 56 194-249 47-102 (107)
34 1x79_B RAB GTPase binding effe 80.2 33 0.0011 30.8 13.1 79 230-335 7-85 (112)
35 3u59_A Tropomyosin beta chain; 80.1 15 0.0005 31.6 10.2 61 204-264 33-97 (101)
36 1m1j_A Fibrinogen alpha subuni 79.8 27 0.00094 38.0 14.2 27 360-386 177-203 (491)
37 1gd2_E Transcription factor PA 78.6 5.2 0.00018 33.1 6.6 30 299-328 26-55 (70)
38 3i00_A HIP-I, huntingtin-inter 78.0 12 0.00042 33.7 9.3 76 162-246 10-85 (120)
39 2efr_A General control protein 73.9 59 0.002 30.5 18.1 21 319-339 73-93 (155)
40 3hnw_A Uncharacterized protein 72.5 58 0.002 29.7 13.6 18 170-187 28-45 (138)
41 1t2k_D Cyclic-AMP-dependent tr 72.5 17 0.00059 28.5 7.9 46 272-328 3-48 (61)
42 3swk_A Vimentin; cytoskeleton, 72.0 9.8 0.00034 32.2 6.8 71 310-387 1-83 (86)
43 1deq_A Fibrinogen (alpha chain 71.9 69 0.0024 34.2 14.5 19 249-267 116-134 (390)
44 2wt7_A Proto-oncogene protein 71.7 24 0.00081 28.0 8.6 46 272-328 4-49 (63)
45 3s4r_A Vimentin; alpha-helix, 70.5 32 0.0011 29.4 9.8 77 167-254 16-92 (93)
46 3s9g_A Protein hexim1; cyclin 69.9 29 0.001 30.8 9.4 24 302-325 65-88 (104)
47 1ic2_A Tropomyosin alpha chain 69.9 45 0.0016 27.5 10.4 38 302-339 34-71 (81)
48 1gd2_E Transcription factor PA 68.7 22 0.00076 29.3 8.0 57 252-328 13-69 (70)
49 3i00_A HIP-I, huntingtin-inter 68.6 39 0.0013 30.4 10.3 21 214-234 14-34 (120)
50 2i1j_A Moesin; FERM, coiled-co 68.3 7.4 0.00025 42.7 6.6 13 18-30 119-131 (575)
51 1go4_E MAD1 (mitotic arrest de 68.1 18 0.00063 31.8 7.8 30 213-242 10-39 (100)
52 3tnu_B Keratin, type II cytosk 68.0 44 0.0015 29.7 10.5 8 253-260 15-22 (129)
53 2oqq_A Transcription factor HY 67.3 15 0.0005 28.0 6.0 37 201-237 3-39 (42)
54 2v66_B Nuclear distribution pr 67.0 71 0.0024 28.6 14.1 31 305-335 38-68 (111)
55 3tnu_A Keratin, type I cytoske 66.7 35 0.0012 30.4 9.6 14 250-263 35-48 (131)
56 2no2_A HIP-I, huntingtin-inter 66.6 68 0.0023 28.2 11.6 31 348-378 70-100 (107)
57 3mq9_A Bone marrow stromal ant 66.0 1.2E+02 0.0043 31.2 15.0 20 297-316 452-471 (471)
58 1p9i_A Cortexillin I/GCN4 hybr 65.5 5.6 0.00019 28.0 3.2 28 218-245 2-29 (31)
59 2jee_A YIIU; FTSZ, septum, coi 65.3 57 0.002 27.8 10.0 49 214-262 26-78 (81)
60 3ghg_A Fibrinogen alpha chain; 64.9 59 0.002 36.1 12.5 38 240-281 103-141 (562)
61 3u1c_A Tropomyosin alpha-1 cha 64.8 68 0.0023 27.6 15.6 92 217-322 4-99 (101)
62 3s4r_A Vimentin; alpha-helix, 63.2 71 0.0024 27.3 12.6 29 214-242 15-43 (93)
63 2dgc_A Protein (GCN4); basic d 63.2 11 0.00038 30.2 5.1 32 299-330 27-58 (63)
64 2v4h_A NF-kappa-B essential mo 62.7 57 0.002 29.3 10.0 23 207-229 37-59 (110)
65 2q6q_A Spindle POLE BODY compo 62.2 25 0.00084 29.4 7.0 27 204-230 6-32 (74)
66 1dh3_A Transcription factor CR 61.9 27 0.00091 27.3 6.9 31 299-329 19-49 (55)
67 2b9c_A Striated-muscle alpha t 61.6 47 0.0016 30.7 9.7 68 270-337 51-122 (147)
68 4gkw_A Spindle assembly abnorm 61.5 1.1E+02 0.0036 28.7 20.5 29 241-269 55-83 (167)
69 1jnm_A Proto-oncogene C-JUN; B 60.4 40 0.0014 26.5 7.8 30 299-328 19-48 (62)
70 3qh9_A Liprin-beta-2; coiled-c 59.7 39 0.0013 28.9 7.9 53 164-223 23-76 (81)
71 2ocy_A RAB guanine nucleotide 58.1 1.2E+02 0.0042 28.4 17.2 121 164-318 17-145 (154)
72 2zqm_A Prefoldin beta subunit 58.1 83 0.0029 26.5 10.1 37 213-249 11-47 (117)
73 2wt7_B Transcription factor MA 57.6 60 0.002 28.1 8.9 68 255-329 8-75 (90)
74 1f5n_A Interferon-induced guan 57.4 1.1E+02 0.0038 33.8 13.4 12 115-126 255-266 (592)
75 3q8t_A Beclin-1; autophagy, AT 57.2 93 0.0032 26.7 13.1 26 167-192 4-29 (96)
76 3mq7_A Bone marrow stromal ant 55.5 1.2E+02 0.0042 27.6 12.5 27 297-323 80-106 (121)
77 2zuo_A MVP, major vault protei 55.2 3.1E+02 0.011 32.1 19.4 61 169-236 651-718 (861)
78 3a7o_A Autophagy protein 16; c 55.1 22 0.00074 29.9 5.5 44 197-240 28-71 (75)
79 1m1j_C Fibrinogen gamma chain; 54.9 1.9E+02 0.0064 30.8 14.2 12 213-224 53-64 (409)
80 2i1j_A Moesin; FERM, coiled-co 54.8 9.2 0.00031 42.0 4.3 12 168-179 301-312 (575)
81 3a7p_A Autophagy protein 16; c 53.8 1.4E+02 0.0048 28.1 11.5 22 311-332 112-133 (152)
82 4h22_A Leucine-rich repeat fli 53.3 42 0.0014 29.8 7.4 65 204-271 19-83 (103)
83 3u59_A Tropomyosin beta chain; 51.2 1.2E+02 0.004 26.0 15.3 47 217-263 4-54 (101)
84 3iv1_A Tumor susceptibility ge 50.6 1.2E+02 0.0039 25.8 10.1 63 256-328 10-72 (78)
85 4abm_A Charged multivesicular 50.3 66 0.0023 26.9 7.9 62 221-283 12-78 (79)
86 1kd8_B GABH BLL, GCN4 acid bas 49.6 22 0.00075 26.3 4.2 30 303-332 2-31 (36)
87 1go4_E MAD1 (mitotic arrest de 49.3 74 0.0025 28.0 8.3 31 304-334 14-44 (100)
88 4h22_A Leucine-rich repeat fli 49.1 34 0.0012 30.4 6.1 51 196-246 39-89 (103)
89 3a7p_A Autophagy protein 16; c 48.9 1.8E+02 0.006 27.4 11.4 63 166-234 67-129 (152)
90 1m1j_B Fibrinogen beta chain; 48.8 2.9E+02 0.01 30.0 15.7 15 39-53 31-45 (464)
91 4gkw_A Spindle assembly abnorm 48.4 1.7E+02 0.006 27.2 13.3 63 168-230 61-127 (167)
92 1ci6_A Transcription factor AT 48.2 27 0.00093 27.8 5.0 30 299-328 20-49 (63)
93 3trt_A Vimentin; cytoskeleton, 47.8 1.1E+02 0.0037 24.6 10.5 24 303-326 50-73 (77)
94 1kd8_A GABH AIV, GCN4 acid bas 47.6 20 0.00067 26.5 3.6 26 303-328 2-27 (36)
95 3lay_A Zinc resistance-associa 47.5 86 0.0029 29.7 9.2 60 249-318 70-129 (175)
96 2l5g_B Putative uncharacterize 46.9 45 0.0015 25.4 5.6 30 237-266 7-36 (42)
97 3iv1_A Tumor susceptibility ge 45.1 1.4E+02 0.0048 25.2 9.7 57 227-283 16-72 (78)
98 2lw1_A ABC transporter ATP-bin 44.8 56 0.0019 27.3 6.7 25 216-240 23-47 (89)
99 3cl3_D NF-kappa-B essential mo 43.3 54 0.0019 30.2 6.7 62 172-233 4-73 (130)
100 3iox_A AGI/II, PA; alpha helix 43.2 3.7E+02 0.013 29.6 15.2 41 244-284 46-86 (497)
101 3efg_A Protein SLYX homolog; x 43.0 49 0.0017 27.6 6.0 37 201-237 14-50 (78)
102 3nmd_A CGMP dependent protein 42.9 70 0.0024 26.8 6.8 24 197-220 36-59 (72)
103 2xdj_A Uncharacterized protein 42.9 76 0.0026 26.9 7.2 30 352-381 33-65 (83)
104 2wt7_A Proto-oncogene protein 42.7 58 0.002 25.8 6.1 27 214-240 22-48 (63)
105 2akf_A Coronin-1A; coiled coil 42.5 30 0.001 24.7 3.8 24 165-188 4-27 (32)
106 2yy0_A C-MYC-binding protein; 42.0 30 0.001 27.0 4.3 30 345-374 18-47 (53)
107 2f1m_A Acriflavine resistance 42.0 62 0.0021 30.8 7.4 34 226-259 78-111 (277)
108 1t2k_D Cyclic-AMP-dependent tr 40.5 54 0.0019 25.6 5.6 29 214-242 21-49 (61)
109 2e7s_A RAB guanine nucleotide 40.4 90 0.0031 28.9 7.8 30 165-194 6-35 (135)
110 2yy0_A C-MYC-binding protein; 40.0 38 0.0013 26.5 4.5 30 304-333 21-50 (53)
111 1ez3_A Syntaxin-1A; three heli 39.9 1.7E+02 0.006 24.8 12.3 33 250-282 47-79 (127)
112 1ik9_A DNA repair protein XRCC 39.9 2.7E+02 0.0093 27.0 12.2 79 189-272 125-208 (213)
113 1dh3_A Transcription factor CR 39.8 37 0.0013 26.5 4.5 28 215-242 22-49 (55)
114 1ci6_A Transcription factor AT 39.6 69 0.0024 25.5 6.1 26 214-239 22-47 (63)
115 1s94_A S-syntaxin; three helix 39.6 2.2E+02 0.0076 25.9 11.4 36 248-283 76-111 (180)
116 3nmd_A CGMP dependent protein 39.5 53 0.0018 27.5 5.6 29 202-230 20-48 (72)
117 1x8y_A Lamin A/C; structural p 39.3 1.4E+02 0.0049 24.9 8.3 26 215-240 28-53 (86)
118 1wt6_A Myotonin-protein kinase 38.7 1.8E+02 0.0061 24.9 8.7 30 234-263 19-48 (81)
119 4emc_A Monopolin complex subun 38.6 74 0.0025 30.9 7.3 24 216-239 14-37 (190)
120 1hjb_A Ccaat/enhancer binding 38.6 63 0.0022 27.7 6.1 26 215-240 36-61 (87)
121 1xaw_A Occludin; coiled-coil, 38.4 2.5E+02 0.0084 26.1 11.5 82 234-321 54-135 (140)
122 1jnm_A Proto-oncogene C-JUN; B 38.3 40 0.0014 26.5 4.6 29 214-242 21-49 (62)
123 3ni0_A Bone marrow stromal ant 37.7 2.1E+02 0.0073 25.2 10.4 70 252-324 17-89 (99)
124 2dgc_A Protein (GCN4); basic d 37.4 39 0.0013 27.0 4.4 29 214-242 29-57 (63)
125 1eq1_A Apolp-III, apolipophori 36.7 56 0.0019 30.6 5.8 74 302-375 78-158 (166)
126 3jsv_C NF-kappa-B essential mo 36.5 1.6E+02 0.0053 25.8 8.3 39 203-241 11-52 (94)
127 2e7s_A RAB guanine nucleotide 36.1 1.4E+02 0.0049 27.5 8.4 18 320-337 100-117 (135)
128 1deb_A APC protein, adenomatou 36.0 1.6E+02 0.0055 23.3 7.9 19 304-322 33-51 (54)
129 1ses_A Seryl-tRNA synthetase; 35.4 1.2E+02 0.0043 31.8 9.1 15 385-399 168-182 (421)
130 3m48_A General control protein 35.0 32 0.0011 25.0 3.1 25 304-328 2-26 (33)
131 4dk0_A Putative MACA; alpha-ha 34.8 55 0.0019 32.4 6.0 26 231-256 100-125 (369)
132 2oxj_A Hybrid alpha/beta pepti 34.1 39 0.0013 24.7 3.4 26 303-328 2-27 (34)
133 2eqb_B RAB guanine nucleotide 33.7 2.4E+02 0.0084 24.7 11.1 37 215-251 12-48 (97)
134 4f61_I Stathmin-like domain R4 33.7 3.8E+02 0.013 26.9 18.9 44 296-339 112-160 (240)
135 1jcd_A Major outer membrane li 33.6 1.6E+02 0.0055 23.1 7.2 40 214-256 10-49 (52)
136 2hy6_A General control protein 33.3 53 0.0018 24.0 4.0 27 302-328 1-27 (34)
137 4dnd_A Syntaxin-10, SYN10; str 32.8 2.8E+02 0.0094 25.0 10.0 65 198-262 64-128 (130)
138 2ve7_A Kinetochore protein HEC 32.8 52 0.0018 33.5 5.5 23 222-244 185-207 (315)
139 2dq0_A Seryl-tRNA synthetase; 32.6 1.3E+02 0.0046 32.0 8.9 39 362-400 162-210 (455)
140 3fpp_A Macrolide-specific effl 32.5 1E+02 0.0034 30.2 7.4 36 224-259 92-127 (341)
141 3bas_A Myosin heavy chain, str 32.1 2.3E+02 0.0077 23.8 11.7 33 304-336 30-62 (89)
142 1wle_A Seryl-tRNA synthetase; 32.1 3E+02 0.01 29.9 11.5 11 362-372 188-198 (501)
143 2j5u_A MREC protein; bacterial 32.0 23 0.00079 35.0 2.7 35 225-259 22-56 (255)
144 1wle_A Seryl-tRNA synthetase; 31.7 2.2E+02 0.0077 30.9 10.5 26 216-241 78-103 (501)
145 3m9b_A Proteasome-associated A 31.7 51 0.0017 33.3 5.1 20 304-323 77-96 (251)
146 4dk0_A Putative MACA; alpha-ha 31.6 1.4E+02 0.0048 29.4 8.3 21 304-324 124-144 (369)
147 3ryc_E Stathmin-4; alpha-tubul 31.6 3.2E+02 0.011 25.4 14.7 98 215-324 43-140 (143)
148 1hjb_A Ccaat/enhancer binding 31.4 85 0.0029 26.8 5.8 25 304-328 38-62 (87)
149 1pfi_A Major coat protein of P 31.4 32 0.0011 26.4 2.7 19 16-34 27-45 (46)
150 4etp_A Kinesin-like protein KA 31.1 1.1E+02 0.0037 32.1 7.8 7 401-407 149-155 (403)
151 3cvf_A Homer-3, homer protein 31.1 2.4E+02 0.0083 23.8 9.0 53 216-271 7-59 (79)
152 3tnu_A Keratin, type I cytoske 30.7 2.8E+02 0.0097 24.5 13.4 32 210-241 33-64 (131)
153 3qh9_A Liprin-beta-2; coiled-c 29.7 2.2E+02 0.0074 24.4 7.8 16 215-230 26-41 (81)
154 2nrj_A HBL B protein; enteroto 29.4 4E+02 0.014 27.3 11.5 123 162-285 118-264 (346)
155 2ocy_A RAB guanine nucleotide 29.3 3.6E+02 0.012 25.3 17.0 34 203-236 15-48 (154)
156 1gmj_A ATPase inhibitor; coile 29.1 1.3E+02 0.0045 25.8 6.5 45 266-323 35-79 (84)
157 3jsv_C NF-kappa-B essential mo 28.9 2.9E+02 0.01 24.1 10.9 16 271-286 40-55 (94)
158 3m9b_A Proteasome-associated A 28.8 61 0.0021 32.7 5.1 21 307-327 73-93 (251)
159 3m91_A Proteasome-associated A 28.6 1.3E+02 0.0046 23.4 5.9 32 308-339 8-39 (51)
160 1gu4_A CAAT/enhancer binding p 28.4 1.1E+02 0.0037 25.7 5.8 27 302-328 36-62 (78)
161 2dq0_A Seryl-tRNA synthetase; 28.2 1E+02 0.0035 32.9 7.0 23 218-240 41-63 (455)
162 2w6b_A RHO guanine nucleotide 28.1 1.1E+02 0.0038 24.5 5.4 31 219-249 14-44 (56)
163 2wvr_A Geminin; DNA replicatio 28.1 1.6E+02 0.0054 29.0 7.7 44 216-259 116-159 (209)
164 4fla_A Regulation of nuclear P 28.0 3.6E+02 0.012 24.9 11.5 54 221-274 78-131 (152)
165 3tnu_B Keratin, type II cytosk 27.7 3.2E+02 0.011 24.1 13.9 29 212-240 33-61 (129)
166 3qne_A Seryl-tRNA synthetase, 27.4 1.2E+02 0.004 33.1 7.3 21 220-240 45-65 (485)
167 1uii_A Geminin; human, DNA rep 26.9 2E+02 0.0069 24.6 7.2 25 349-373 56-80 (83)
168 3q0x_A Centriole protein; cent 26.8 2.4E+02 0.0083 27.9 8.9 53 202-254 165-217 (228)
169 4dnd_A Syntaxin-10, SYN10; str 26.6 3.5E+02 0.012 24.3 10.6 64 254-317 64-127 (130)
170 1zxa_A CGMP-dependent protein 26.1 59 0.002 26.8 3.7 28 197-224 21-48 (67)
171 1l8d_A DNA double-strand break 25.9 2.9E+02 0.01 23.1 10.8 24 168-191 11-34 (112)
172 4dzn_A Coiled-coil peptide CC- 25.9 1.3E+02 0.0044 21.4 4.8 13 272-284 3-15 (33)
173 1cii_A Colicin IA; bacteriocin 25.4 7.3E+02 0.025 27.5 13.3 42 227-268 337-378 (602)
174 3m91_A Proteasome-associated A 25.3 1.3E+02 0.0045 23.4 5.4 15 268-282 34-48 (51)
175 2wt7_B Transcription factor MA 24.7 3.4E+02 0.012 23.4 8.5 17 167-183 21-37 (90)
176 3he4_A Synzip6; heterodimeric 24.4 92 0.0032 24.3 4.2 47 203-249 5-51 (56)
177 3s9g_A Protein hexim1; cyclin 24.3 3.3E+02 0.011 24.2 8.3 23 219-241 41-63 (104)
178 4ad8_A DNA repair protein RECN 24.3 6.4E+02 0.022 26.5 16.1 13 481-493 435-447 (517)
179 1lq7_A Alpha3W; three helix bu 24.1 2.2E+02 0.0076 22.8 6.5 39 272-311 26-64 (67)
180 1ses_A Seryl-tRNA synthetase; 23.9 1.6E+02 0.0054 31.1 7.4 22 219-240 39-60 (421)
181 1wt6_A Myotonin-protein kinase 23.4 3.5E+02 0.012 23.1 8.5 18 247-264 46-63 (81)
182 1m1j_B Fibrinogen beta chain; 23.3 7.4E+02 0.025 26.9 16.9 8 203-210 102-109 (464)
183 1gu4_A CAAT/enhancer binding p 22.9 1.6E+02 0.0055 24.6 5.8 26 216-241 37-62 (78)
184 3cve_A Homer protein homolog 1 22.4 3.4E+02 0.012 22.6 10.1 50 219-271 4-53 (72)
185 1nkp_A C-MYC, MYC proto-oncoge 22.3 2.2E+02 0.0076 23.8 6.7 20 355-374 68-87 (88)
186 3uux_B Mitochondrial division 22.2 6.1E+02 0.021 25.5 10.8 18 307-324 210-227 (242)
187 1l8d_A DNA double-strand break 21.6 3.6E+02 0.012 22.6 11.1 21 306-326 82-102 (112)
188 3onj_A T-snare VTI1; helix, HA 21.3 3.7E+02 0.013 22.7 9.0 31 298-328 30-60 (97)
189 2wvr_A Geminin; DNA replicatio 21.3 2.2E+02 0.0075 28.1 7.2 26 348-373 124-149 (209)
190 1zvu_A Topoisomerase IV subuni 21.3 2.5E+02 0.0086 32.1 8.7 50 326-375 375-424 (716)
191 3m48_A General control protein 21.3 1.1E+02 0.0037 22.3 3.8 22 353-374 7-28 (33)
192 1uii_A Geminin; human, DNA rep 21.2 2.3E+02 0.0078 24.3 6.5 19 217-235 55-73 (83)
193 1deb_A APC protein, adenomatou 21.2 3.1E+02 0.011 21.7 7.9 46 217-262 5-50 (54)
194 2xnx_M M protein, M1-BC1; cell 20.9 4.3E+02 0.015 24.7 8.8 81 177-257 10-108 (146)
195 3c3f_A Alpha/beta peptide with 20.7 1.2E+02 0.0041 22.1 3.9 26 303-328 2-27 (34)
196 2r2v_A GCN4 leucine zipper; co 20.6 1.2E+02 0.0041 22.2 3.9 26 303-328 2-27 (34)
197 1xaw_A Occludin; coiled-coil, 20.6 2.9E+02 0.0098 25.7 7.5 11 186-196 54-64 (140)
198 3u06_A Protein claret segregat 20.5 1.6E+02 0.0053 31.2 6.5 35 204-238 6-40 (412)
199 3qne_A Seryl-tRNA synthetase, 20.4 1.8E+02 0.0062 31.6 7.2 9 392-400 277-285 (485)
200 2wq1_A General control protein 20.3 1.3E+02 0.0043 21.9 3.9 25 304-328 2-26 (33)
201 4ad8_A DNA repair protein RECN 20.2 7.6E+02 0.026 25.9 14.3 40 298-337 298-337 (517)
202 3lss_A Seryl-tRNA synthetase; 20.0 5.4E+02 0.018 27.9 10.7 73 232-321 37-137 (484)
203 1gk7_A Vimentin; intermediate 20.0 1.7E+02 0.0059 21.5 4.8 26 214-239 12-37 (39)
No 1
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=97.60 E-value=0.0078 Score=58.27 Aligned_cols=166 Identities=22% Similarity=0.246 Sum_probs=103.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045262 165 CEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKT 244 (594)
Q Consensus 165 ~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v 244 (594)
...||...|.....++.+=..|+.+|-||-.- =.+||.+|. .+|..+.+++.-|+..+.+|.
T Consensus 8 ~~ee~~ywk~~~~~~~q~~~~le~El~EFqes------SrELE~ELE---~eL~~~Ek~~~~L~~~~~~L~--------- 69 (189)
T 2v71_A 8 LKEETAYWKELSMKYKQSFQEARDELVEFQEG------SRELEAELE---AQLVQAEQRNRDLQADNQRLK--------- 69 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---------
Confidence 47899999999999999999999999999653 456666654 356666666666666666654
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 045262 245 VSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLE 324 (594)
Q Consensus 245 ~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~E 324 (594)
.|++.||.|+...+..... ++..|+..++.|... ...|-..+++|-..|++|+-.
T Consensus 70 -~E~e~~k~K~~~~~~e~~~-------~~~~Lq~el~~l~~~-----------------~~~l~~~ireLEq~NDdlEr~ 124 (189)
T 2v71_A 70 -YEVEALKEKLEHQYAQSYK-------QVSVLEDDLSQTRAI-----------------KEQLHKYVRELEQANDDLERA 124 (189)
T ss_dssp -HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHhhHHHHH
Confidence 4566677777665554443 455566666665533 344556666777789999999
Q ss_pred hhHhHHhhhhhhhhhhcch------hh--hHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 045262 325 NSQLARRLESTQMLEISVL------ED--GEREALNEMSQRLREENTSLSKEVEKLH 373 (594)
Q Consensus 325 KreL~~KL~sAe~~~~~~~------E~--~ev~~i~ee~~~LR~~NedL~kQVEqLq 373 (594)
.|..+.-|+..+.+.+..+ ++ .+-..+.+++.+||.+..||.-++.-++
T Consensus 125 ~R~~~~SleD~e~kln~aiEr~alLE~El~EKe~l~~~~QRLkdE~rDLk~El~v~~ 181 (189)
T 2v71_A 125 KRATIMSLEDFEQRLNQAIERNAFLESELDEKESLLVSVQRLKDEARDLRQELAVRE 181 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC------------------
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999988776433 22 2234556667777777777776665554
No 2
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=97.25 E-value=0.11 Score=51.11 Aligned_cols=73 Identities=15% Similarity=0.116 Sum_probs=31.3
Q ss_pred HHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHH----HHHHHHHHHHHHHHHHH
Q 045262 190 LLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTV----SELEAAKTKIKLLKKKL 262 (594)
Q Consensus 190 LLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~----~ELE~ar~kir~LqkKl 262 (594)
|--++.|++-++.+..|+.++..--.+|..|...+..++.....++.++.+...-. .+++.++.+++..+.++
T Consensus 7 L~~L~~LQ~lD~~i~~l~~~~~~lp~el~~le~~~~~l~~~~~~~~~~l~d~~~~~~~~e~~i~~~~~ri~~~~~~l 83 (256)
T 3na7_A 7 LKQLIEISHLDKEIDSLEPLIREKRKDLDKALNDKEAKNKAILNLEEEKLALKLQVSKNEQTLQDTNAKIASIQKKM 83 (256)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444454444445554444444444444444444444444444443333332222 23334444444444444
No 3
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=97.07 E-value=0.0021 Score=75.27 Aligned_cols=76 Identities=20% Similarity=0.125 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-hhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 165 CEQEVKNLKNMVQMLQDREKNLEVELLEYYGL-KEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVAD 240 (594)
Q Consensus 165 ~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~L-KEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e 240 (594)
...|+..|+..+..|+++-.+++.++-+...- ..-+..+.+++.+|.....++..+...+..++.+...|+.++.+
T Consensus 855 ~~~El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~e 931 (1184)
T 1i84_S 855 QEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHE 931 (1184)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666665555554443322110 00122233333344433333333444444444444444444433
No 4
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.83 E-value=0.035 Score=65.08 Aligned_cols=132 Identities=15% Similarity=0.215 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHH
Q 045262 226 SLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLK 305 (594)
Q Consensus 226 sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lk 305 (594)
.|...+..|+.++.++.. .|+....+++.|+.+++........++..|+..+..|+..+. |.+.-...++
T Consensus 918 ~l~~~~~~LE~kl~eLq~---rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~-------e~~~~~~~v~ 987 (1080)
T 2dfs_A 918 RYKKLHIGLENKIMQLQR---KIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEE-------EAKNATNRVL 987 (1080)
T ss_dssp ------------------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 344445555555554433 333344445555555444444444455555555555554432 2222334466
Q ss_pred HHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 045262 306 VLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKL 372 (594)
Q Consensus 306 eLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQVEqL 372 (594)
.|+.|+.+|+.....+..|+..|-.+++..+... ...|..+.++...||+.-++|..++...
T Consensus 988 ~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L-----~~kv~~L~~e~~~L~qq~~~l~~~~~~~ 1049 (1080)
T 2dfs_A 988 SLQEEIAKLRKELHQTQTEKKTIEEWADKYKHET-----EQLVSELKEQNTLLKTEKEELNRRIHDQ 1049 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666666655444443211 1334555666666666666666444444
No 5
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.76 E-value=0.049 Score=63.93 Aligned_cols=23 Identities=35% Similarity=0.523 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhhHHHHHHHHHHh
Q 045262 351 LNEMSQRLREENTSLSKEVEKLH 373 (594)
Q Consensus 351 i~ee~~~LR~~NedL~kQVEqLq 373 (594)
+.+.++.|..+|..|-.|++.|.
T Consensus 1021 L~~kv~~L~~e~~~L~qq~~~l~ 1043 (1080)
T 2dfs_A 1021 TEQLVSELKEQNTLLKTEKEELN 1043 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444
No 6
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=96.63 E-value=0.2 Score=49.28 Aligned_cols=40 Identities=13% Similarity=0.050 Sum_probs=19.0
Q ss_pred chhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 045262 196 LKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVA 239 (594)
Q Consensus 196 LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~ 239 (594)
|.++-..+.+|+.- ..+|+.+...+..|..+...|+++++
T Consensus 3 m~~~L~~L~~LQ~l----D~~i~~l~~~~~~lp~el~~le~~~~ 42 (256)
T 3na7_A 3 SNTHLKQLIEISHL----DKEIDSLEPLIREKRKDLDKALNDKE 42 (256)
T ss_dssp CHHHHHHHHHHHHH----HHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH----HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 45555555554433 23445555555555544444444433
No 7
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.47 E-value=0.44 Score=61.74 Aligned_cols=206 Identities=16% Similarity=0.170 Sum_probs=94.4
Q ss_pred ccCCCCCCCCCCCCCCCCCchHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHH
Q 045262 145 VTPKSDVENPRPCRGSEKDDCEQEVKNLK----NMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLL 220 (594)
Q Consensus 145 ~~~~~~~~~~~a~~~~e~~d~e~EI~~LR----~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L 220 (594)
+..|.-|.||..|- +=|...+ .--.++.++-.+|+.=|- -|.|....|.+|+.+|..+..++..-
T Consensus 1885 ~~~R~~yvTP~syL--------eli~~y~~ll~~K~~el~~~~~rl~~GL~---KL~et~~~V~~l~~~L~~~~~~L~~k 1953 (3245)
T 3vkg_A 1885 RQGRQNYVTPRHYL--------DFINQVVLLINEKRDQLEEEQLHLNIGLK---KLRDTEAQVKDLQVSLAQKNRELDVK 1953 (3245)
T ss_dssp SSSCCCCCCHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCcccCCHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677788885433 1222222 222334444444444333 35666666777777777666666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhH----HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChh
Q 045262 221 NLKIESLQADNRRLEAQVADHAKT----VSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPD 296 (594)
Q Consensus 221 ~~kI~sLE~En~RLq~qv~e~~~v----~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E 296 (594)
..+.+.+=.+...=++++.+-... .++++....++...+...+.+..++.= +.=++++++.++++= ......
T Consensus 1954 ~~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~P-a~Pkr~~l~~ae~~l---~~~~~~ 2029 (3245)
T 3vkg_A 1954 NEQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNKEIAVQKVKAYADLEKAEP-TGPLREEVEQLENAA---NELKLK 2029 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------CHHHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CChHHHHHHHHHHHH---HHHHHH
Confidence 444443322222222222222111 122222233344444444333322210 011233333333221 111134
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q 045262 297 TQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHA 374 (594)
Q Consensus 297 ~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQVEqLq~ 374 (594)
++.+.+.+++||.++.+|+..-.++..||..|...++.++.+.. .+..-++.|-.++.+=..++++|+.
T Consensus 2030 L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~---------rA~~Li~gL~~Ek~RW~~~~~~l~~ 2098 (3245)
T 3vkg_A 2030 QDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVD---------RSIALLDNLNSERGRWEQQSENFNT 2098 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHhhhhccccHHHHHHHHHH
Confidence 55566667778888877777777777777766666555554432 1122234444445555555555543
No 8
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=96.29 E-value=0.64 Score=42.37 Aligned_cols=24 Identities=13% Similarity=0.036 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 167 QEVKNLKNMVQMLQDREKNLEVEL 190 (594)
Q Consensus 167 ~EI~~LR~lVeeLqERE~~LE~EL 190 (594)
.++..+...+..|...-..++.++
T Consensus 13 ~~~~~~~~~~~~l~~~l~~l~~~~ 36 (284)
T 1c1g_A 13 LDKENALDRADEAEADKKAAEDRS 36 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444433
No 9
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=95.24 E-value=3.3 Score=54.00 Aligned_cols=84 Identities=12% Similarity=0.183 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHH---HhhHHHHHHHHHHhh
Q 045262 298 QSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLR---EENTSLSKEVEKLHA 374 (594)
Q Consensus 298 ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR---~~NedL~kQVEqLq~ 374 (594)
+=|.+++.++|.+..+-++...+.|.+-.+|-.+|+.-+......+ .+.+.++.+++... ..-+.|...+.+=+.
T Consensus 2010 ~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~--~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~ 2087 (3245)
T 3vkg_A 2010 GPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLI--RETEQIKTESSKVKNKVDRSIALLDNLNSERG 2087 (3245)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhhhhccc
Confidence 4566677778877777777777777777777777776666554221 12222333332222 223567777777777
Q ss_pred hhcchhhHH
Q 045262 375 DKCAGVEEL 383 (594)
Q Consensus 375 dRfseVEEL 383 (594)
.|-..+++|
T Consensus 2088 RW~~~~~~l 2096 (3245)
T 3vkg_A 2088 RWEQQSENF 2096 (3245)
T ss_dssp HHHHHHHHH
T ss_pred cHHHHHHHH
Confidence 777777765
No 10
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=95.03 E-value=0.19 Score=53.34 Aligned_cols=22 Identities=32% Similarity=0.342 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHhHHHHHHhhHh
Q 045262 307 LEAEAEDLRKSNMKLQLENSQL 328 (594)
Q Consensus 307 LE~Ev~ELRr~NkeLQ~EKreL 328 (594)
++.++.+++.....|+.|+.++
T Consensus 528 ~~~~~~~~~~~~~~~~~~~~~l 549 (597)
T 3oja_B 528 RRTEADAKQKETEDLEQENIAL 549 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhhhcchhhHHhhhHHH
Confidence 4444444444444444444444
No 11
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=94.47 E-value=2.6 Score=37.79 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhHh
Q 045262 305 KVLEAEAEDLRKSNMKLQLENSQL 328 (594)
Q Consensus 305 keLE~Ev~ELRr~NkeLQ~EKreL 328 (594)
++|+..+.+....|..|+.+|+.|
T Consensus 86 ~el~~rleeeee~~~~L~~~kkkl 109 (129)
T 2fxo_A 86 KEMNKRLEDEEEMNAELTAKKRKL 109 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433
No 12
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.69 E-value=3.7 Score=42.84 Aligned_cols=38 Identities=16% Similarity=0.186 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhh
Q 045262 302 QRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLE 339 (594)
Q Consensus 302 q~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~ 339 (594)
+..+..=.++..|++.|.+|+.+.+++-.+++.|.+.+
T Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (487)
T 3oja_A 435 RDWDMYQHKETQLAEENARLKKLNGEADLALASANATL 472 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHH
Confidence 33444455666677777777777777777777666655
No 13
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.27 E-value=1.5 Score=46.49 Aligned_cols=33 Identities=18% Similarity=0.275 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhh
Q 045262 305 KVLEAEAEDLRKSNMKLQLENSQLARRLESTQM 337 (594)
Q Consensus 305 keLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~ 337 (594)
.+||....+.++...+|+.|+..+..+|..-+.
T Consensus 547 ~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~ 579 (597)
T 3oja_B 547 IALEKQLDNKRAKQAELRQETSLKRQKVKQLEA 579 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555555444444444333
No 14
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=92.43 E-value=4.4 Score=38.67 Aligned_cols=103 Identities=18% Similarity=0.322 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHH--------HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 045262 166 EQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQET--------IVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQ 237 (594)
Q Consensus 166 e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa--------~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~q 237 (594)
+.-+..|+..+..|+.-...|+-++...-..-+||. .+.+|+.++..-..|++.+.-....++.+|+.|++.
T Consensus 47 E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ek 126 (168)
T 3o0z_A 47 ESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDM 126 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666666666666667777777776666666665 377888888888888888888888888888888888
Q ss_pred HHHHHhHHHHHHH-HHHHHHHHHHHHHHHHHH
Q 045262 238 VADHAKTVSELEA-AKTKIKLLKKKLRTEAEQ 268 (594)
Q Consensus 238 v~e~~~v~~ELE~-ar~kir~LqkKl~~~a~q 268 (594)
+...-+-..-+++ .-=++|.||.++..+...
T Consensus 127 l~~lEKe~a~~eid~~~eLKalQ~~~eqE~~~ 158 (168)
T 3o0z_A 127 LNHSEKEKNNLEIDLNYKLKSLQQRLEQEVNE 158 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 8777665554441 223567777777665543
No 15
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=91.46 E-value=10 Score=36.25 Aligned_cols=37 Identities=16% Similarity=0.207 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhh
Q 045262 304 LKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEI 340 (594)
Q Consensus 304 lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~ 340 (594)
+..|..|+..+|-....++.+|+.|.-|+..-|...+
T Consensus 99 i~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a 135 (168)
T 3o0z_A 99 ITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKN 135 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557778888888888888888888777777766554
No 16
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=91.05 E-value=8.3 Score=34.51 Aligned_cols=18 Identities=22% Similarity=0.549 Sum_probs=8.4
Q ss_pred HHHhhHHHHHHHHHHhhh
Q 045262 358 LREENTSLSKEVEKLHAD 375 (594)
Q Consensus 358 LR~~NedL~kQVEqLq~d 375 (594)
|.....+|-++++.+...
T Consensus 109 le~e~~~Lk~~led~e~~ 126 (129)
T 2fxo_A 109 LEDECSELKRDIDDLELT 126 (129)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 334444555555554443
No 17
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=91.04 E-value=7.9 Score=34.40 Aligned_cols=30 Identities=27% Similarity=0.354 Sum_probs=19.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 045262 215 MEGRLLNLKIESLQADNRRLEAQVADHAKT 244 (594)
Q Consensus 215 ~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v 244 (594)
.+|..|+..|..+..+|.+|..++.-...+
T Consensus 20 ~~I~~LR~qid~~~~e~a~l~leldn~~~~ 49 (119)
T 3ol1_A 20 EEMRELRRQVDQLTNDKARVEVERDNLAED 49 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777777776665544433
No 18
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=90.79 E-value=1.6 Score=42.62 Aligned_cols=58 Identities=16% Similarity=0.201 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 045262 218 RLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVT 281 (594)
Q Consensus 218 ~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~ 281 (594)
..|..+...|+.+..+|.+|+.++.....++| ..|=.|+-...+.=|..|+.|++++.
T Consensus 142 ~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E------~~L~~KF~~lLNeKK~KIR~lq~~Ll 199 (213)
T 1ik9_A 142 EHLQKENERLLRDWNDVQGRFEKAVSAKEALE------TDLYKRFILVLNEKKTKIRSLHNKLL 199 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33455566677777788888888888888887 34556666666666667777765553
No 19
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=90.48 E-value=3.3 Score=37.98 Aligned_cols=94 Identities=17% Similarity=0.200 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHHH--HHHHH-HHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh
Q 045262 217 GRLLNLKIESLQAD--NRRLE-AQVADHAK--TVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAA 291 (594)
Q Consensus 217 i~~L~~kI~sLE~E--n~RLq-~qv~e~~~--v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~ 291 (594)
+..++.+|..+... +.++. ..++-.++ +.-|+-.++.++..|..++... ..++-.||.++..++.+
T Consensus 34 A~~vd~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~----~kE~~~lK~el~~~~~k----- 104 (138)
T 3hnw_A 34 ASYINNKITEFNKEESYRRMSAELRTDMMYLNIADDYFKAKKMADSLSLDIENK----DKEIYDLKHELIAAQIK----- 104 (138)
T ss_dssp HHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH-----
Confidence 34466667666643 55554 23333222 4456776777777776666543 55677777777776655
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHh
Q 045262 292 AIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARR 331 (594)
Q Consensus 292 ~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~K 331 (594)
+.++..++.+|++.+..||.++..|--.
T Consensus 105 ------------~e~~~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 105 ------------AESSAKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667778888888888888887777433
No 20
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=88.99 E-value=2.7 Score=46.31 Aligned_cols=81 Identities=14% Similarity=0.152 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhhhh
Q 045262 297 TQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHADK 376 (594)
Q Consensus 297 ~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQVEqLq~dR 376 (594)
+...++.|+.|+.=|+++|-..++|+-. ..+||.+-.-.-....+. .| =.+.|+++.|||||+-.-.
T Consensus 126 VdnQlsnIrvLQsnLedq~~kIQRLEvD---IdiqirsCKgsCsr~~~~-~v---------d~~sY~~~QKQLeQv~a~d 192 (562)
T 3ghg_A 126 VIEKVQHIQLLQKNVRAQLVDMKRLEVD---IDIKIRSCRGSCSRALAR-EV---------DLKDYEDQQKQLEQVIAKD 192 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHGGGTBSCCCCC-CC---------CHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhccccccchhee-ec---------chHHHHHHHHHHHHHhhcc
Confidence 4444566677777777666666666543 334444433221111111 11 1256999999999999888
Q ss_pred cchhhHHHHHHHHH
Q 045262 377 CAGVEELVYLKWIN 390 (594)
Q Consensus 377 fseVEELVYLRWVN 390 (594)
.--++..=||+=+.
T Consensus 193 L~p~~~~q~Lp~lK 206 (562)
T 3ghg_A 193 LLPSRDRQHLPLIK 206 (562)
T ss_dssp CCCSCCCC------
T ss_pred cCCccccccchhcc
Confidence 87777777887554
No 21
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=87.64 E-value=12 Score=33.27 Aligned_cols=36 Identities=25% Similarity=0.285 Sum_probs=28.7
Q ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 045262 160 SEKDDCEQEVKNLKNMVQMLQDREKNLEVELLEYYG 195 (594)
Q Consensus 160 ~e~~d~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~ 195 (594)
....-++.+|..||..|..+.---.+|+.++--...
T Consensus 13 ~~~~~ye~~I~~LR~qid~~~~e~a~l~leldn~~~ 48 (119)
T 3ol1_A 13 RLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAE 48 (119)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567899999999999998888888888765554
No 22
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=86.30 E-value=7.3 Score=33.01 Aligned_cols=25 Identities=16% Similarity=0.171 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhHhH
Q 045262 305 KVLEAEAEDLRKSNMKLQLENSQLA 329 (594)
Q Consensus 305 keLE~Ev~ELRr~NkeLQ~EKreL~ 329 (594)
..+|.+++-||+-..++-.-+-+|-
T Consensus 45 ~~~E~d~~~LrkdvD~a~l~r~dLE 69 (86)
T 3swk_A 45 EEAENTLQSFRQDVDNASLARLDLE 69 (86)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 5688888888888887777776663
No 23
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=86.15 E-value=15 Score=32.92 Aligned_cols=73 Identities=18% Similarity=0.204 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Q 045262 247 ELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENS 326 (594)
Q Consensus 247 ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKr 326 (594)
|++.||.|.... ...+-.++..|+..+..|.... ..|=..+.+|-..|++|+-..|
T Consensus 18 E~e~~k~K~~~~-------~~e~~~~~~~Lq~El~~lr~~~-----------------~~l~~~iReLEq~NDDLER~~R 73 (111)
T 2v66_B 18 EVEALKEKLEHQ-------YAQSYKQVSVLEDDLSQTRAIK-----------------EQLHKYVRELEQANDDLERAKR 73 (111)
T ss_dssp HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHhchHHHHHHH
Confidence 444455554443 3334445667777777776552 2344455666678999999999
Q ss_pred HhHHhhhhhhhhhhcch
Q 045262 327 QLARRLESTQMLEISVL 343 (594)
Q Consensus 327 eL~~KL~sAe~~~~~~~ 343 (594)
.-+.=|...+.+.|..+
T Consensus 74 ~t~~SLeD~E~k~n~ai 90 (111)
T 2v66_B 74 ATIVSLEDFEQRLNQAI 90 (111)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 98888888888876433
No 24
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=85.64 E-value=17 Score=37.75 Aligned_cols=14 Identities=7% Similarity=0.041 Sum_probs=8.0
Q ss_pred CCCchHHHHHHHHH
Q 045262 161 EKDDCEQEVKNLKN 174 (594)
Q Consensus 161 e~~d~e~EI~~LR~ 174 (594)
.......|++.|..
T Consensus 322 g~~eF~~Eve~L~~ 335 (487)
T 3oja_A 322 GSETERLECERENQ 335 (487)
T ss_dssp ---CHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhc
Confidence 45677888877654
No 25
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=85.33 E-value=19 Score=37.24 Aligned_cols=84 Identities=14% Similarity=0.204 Sum_probs=46.9
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHH---HHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHH
Q 045262 235 EAQVADHAKTVSELEAAKTKIKLLKKKLR---TEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEA 311 (594)
Q Consensus 235 q~qv~e~~~v~~ELE~ar~kir~LqkKl~---~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev 311 (594)
++++.....-...-..++....+||+||. ...-|.+.|...--.-|..|++-=+ .+.-.-++++++||.||
T Consensus 379 ~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 452 (471)
T 3mq9_A 379 QTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLD------AEKAQGQKKVEELEGEI 452 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHH------HHHHHHHHHHHHHHHHH
Confidence 33333333333334457777888888775 4455666776666666666664311 11112234688888888
Q ss_pred HHHHHHhHHHHHH
Q 045262 312 EDLRKSNMKLQLE 324 (594)
Q Consensus 312 ~ELRr~NkeLQ~E 324 (594)
.+|-...+++.-|
T Consensus 453 ~~~~~~~~~~~~~ 465 (471)
T 3mq9_A 453 TTLNHKLQDASAE 465 (471)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7765554444443
No 26
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=85.33 E-value=18 Score=31.34 Aligned_cols=63 Identities=8% Similarity=0.076 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH----HHHHHHHHHHH
Q 045262 202 IVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKT----KIKLLKKKLRT 264 (594)
Q Consensus 202 ~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~----kir~LqkKl~~ 264 (594)
.+..++........||..|.++|..|+.+-.+++..+.+......+-+.... .+..|.|||+.
T Consensus 31 ~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~Rriql 97 (101)
T 3u1c_A 31 DKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555566666788889999999999988888888877665555554444 77777777764
No 27
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=84.94 E-value=29 Score=33.57 Aligned_cols=63 Identities=24% Similarity=0.229 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 045262 166 EQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQAD 230 (594)
Q Consensus 166 e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~E 230 (594)
.+.+..|+.-+.++++==.-||.+|-. .|...+.....|+..+..-..|++.++.+......|
T Consensus 23 ~q~~~~le~El~EFqesSrELE~ELE~--eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~e 85 (189)
T 2v71_A 23 KQSFQEARDELVEFQEGSRELEAELEA--QLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYAQ 85 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777777777777666666665532 344455666677777666667777777666666666
No 28
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=84.49 E-value=22 Score=31.99 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHH
Q 045262 223 KIESLQADNRRLEAQVADHAKTVSEL 248 (594)
Q Consensus 223 kI~sLE~En~RLq~qv~e~~~v~~EL 248 (594)
....|+.+...|+.++.-..+.+.+|
T Consensus 7 ~~~~lq~~~~ql~~qL~k~~~~r~~L 32 (112)
T 1x79_B 7 QVKKLQLMLRQANDQLEKTMKDKQEL 32 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555
No 29
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=83.45 E-value=43 Score=35.71 Aligned_cols=27 Identities=22% Similarity=0.325 Sum_probs=20.0
Q ss_pred HhhHHHHHHHHHHhhhhcchhhHHHHH
Q 045262 360 EENTSLSKEVEKLHADKCAGVEELVYL 386 (594)
Q Consensus 360 ~~NedL~kQVEqLq~dRfseVEELVYL 386 (594)
+.|++..||++|+.....--....=||
T Consensus 179 e~ye~qqKQL~qv~a~~llP~~~~q~l 205 (390)
T 1deq_A 179 EDYKNQQKQLEQVIAINLLPSRDIQYL 205 (390)
T ss_pred HHHHHHHHHHHhhhhhccccccccccc
Confidence 568999999999887766655555454
No 30
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=83.40 E-value=13 Score=31.74 Aligned_cols=41 Identities=22% Similarity=0.321 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045262 203 VMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAK 243 (594)
Q Consensus 203 v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~ 243 (594)
+-.||..+...-..|..|.++|+-|..+|..|..++.+...
T Consensus 8 leqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~ 48 (81)
T 2jee_A 8 FEKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQH 48 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566666666677888888888888888888877666544
No 31
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=83.06 E-value=31 Score=32.39 Aligned_cols=69 Identities=26% Similarity=0.289 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHh
Q 045262 303 RLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLH 373 (594)
Q Consensus 303 ~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQVEqLq 373 (594)
++++-|..+..--|....||.+...|-.+|.++....-.+. .+....-.+++.+-..+-.|-++|-.|+
T Consensus 85 kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~--~eLd~tl~el~~~~~~~~~~~~~~~~~~ 153 (155)
T 2efr_A 85 KLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAIS--EEMKQLEDKVEELLSKNYHLENEVARLK 153 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 35556666666667777777777777777766655443221 1112222344444455555666665554
No 32
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=82.53 E-value=24 Score=31.65 Aligned_cols=47 Identities=15% Similarity=0.149 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhH
Q 045262 271 EQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQ 327 (594)
Q Consensus 271 ~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKre 327 (594)
++|-+|++||...... +..|.- .=..+-.|..+|...+..||.++..
T Consensus 62 E~I~vLkaQv~IY~~D--------F~aERa--dREkl~~eKe~L~~ql~~Lq~q~~~ 108 (110)
T 2v4h_A 62 ETVPVLKAQADIYKAD--------FQAERH--AREKLVEKKEYLQEQLEQLQREFNK 108 (110)
T ss_dssp THHHHHHHHHHHHHHH--------HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHH--------Hccchh--hHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 4677888888776654 222211 1133444555555555555555443
No 33
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=80.63 E-value=16 Score=32.21 Aligned_cols=56 Identities=20% Similarity=0.196 Sum_probs=46.9
Q ss_pred hhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 045262 194 YGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELE 249 (594)
Q Consensus 194 y~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE 249 (594)
-.+++|-..|..|.++|..+..||..|+..+..++.++..+...+....+-+..|.
T Consensus 47 ~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L~ 102 (107)
T 2no2_A 47 RKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQSEANWAAEFAELEKERDSLV 102 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678888899999999999999999999999999999999888866665555543
No 34
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=80.19 E-value=33 Score=30.81 Aligned_cols=79 Identities=16% Similarity=0.200 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHH
Q 045262 230 DNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEA 309 (594)
Q Consensus 230 En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~ 309 (594)
+-..|+.++ .-+.++|+.+...-..|...++...+..+.|+-.|..++ ..=|.
T Consensus 7 ~~~~lq~~~---~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~------------------------q~sE~ 59 (112)
T 1x79_B 7 QVKKLQLML---RQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRA------------------------QASEI 59 (112)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHH
T ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHH
Confidence 334455555 333446666655556666555555555555544443332 23344
Q ss_pred HHHHHHHHhHHHHHHhhHhHHhhhhh
Q 045262 310 EAEDLRKSNMKLQLENSQLARRLEST 335 (594)
Q Consensus 310 Ev~ELRr~NkeLQ~EKreL~~KL~sA 335 (594)
...+||.+-.+++..-++=..+|..-
T Consensus 60 ~L~~Lqq~fsq~q~~vq~qL~~Lt~~ 85 (112)
T 1x79_B 60 LLEELQQGLSQAKRDVQEQMAVLMQS 85 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555544444333
No 35
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=80.07 E-value=15 Score=31.65 Aligned_cols=61 Identities=15% Similarity=0.268 Sum_probs=36.6
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHHH
Q 045262 204 MELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELE----AAKTKIKLLKKKLRT 264 (594)
Q Consensus 204 ~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE----~ar~kir~LqkKl~~ 264 (594)
..++....-...+|.-|.++|..|+.+-.+.+..+.....-..+-+ .|-+.+..|+|||+.
T Consensus 33 k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriql 97 (101)
T 3u59_A 33 KQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQL 97 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445567777888888888887777776665554333332 233366666666653
No 36
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=79.84 E-value=27 Score=38.02 Aligned_cols=27 Identities=11% Similarity=0.014 Sum_probs=19.5
Q ss_pred HhhHHHHHHHHHHhhhhcchhhHHHHH
Q 045262 360 EENTSLSKEVEKLHADKCAGVEELVYL 386 (594)
Q Consensus 360 ~~NedL~kQVEqLq~dRfseVEELVYL 386 (594)
..|+++.||+||+-.....-..+.=||
T Consensus 177 ~~Ye~~QKqLeQv~a~dL~p~~d~q~L 203 (491)
T 1m1j_A 177 EGYDNIQKHLTQASSIDMHPDFQTTTL 203 (491)
T ss_dssp TTTHHHHHHHHHHTTCCCCCSCCCCCC
T ss_pred HHHHHHHHHHHHhhccccCCccchhhh
Confidence 459999999999977666555553443
No 37
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=78.65 E-value=5.2 Score=33.11 Aligned_cols=30 Identities=33% Similarity=0.441 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhHh
Q 045262 299 SRLQRLKVLEAEAEDLRKSNMKLQLENSQL 328 (594)
Q Consensus 299 kKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL 328 (594)
.|-+.+++||..|.+|...+..|+.|+..|
T Consensus 26 RK~~~i~~LE~~v~~le~~~~~l~~en~~L 55 (70)
T 1gd2_E 26 RKEDHLKALETQVVTLKELHSSTTLENDQL 55 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667888888888887777766655544
No 38
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=77.98 E-value=12 Score=33.71 Aligned_cols=76 Identities=14% Similarity=0.183 Sum_probs=46.0
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 162 KDDCEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADH 241 (594)
Q Consensus 162 ~~d~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~ 241 (594)
+++-+..|++|+.-|..|+..=-++ .-|.-.+|..|+.++..-..|++.-+...-..-.||..|+.++...
T Consensus 10 ~d~rD~~Ie~Lkreie~lk~ele~l---------~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~l 80 (120)
T 3i00_A 10 KDEKDHLIERLYREISGLKAQLENM---------KTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDEL 80 (120)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455778999999998887543333 3345555666666666655566555555555555666666665554
Q ss_pred HhHHH
Q 045262 242 AKTVS 246 (594)
Q Consensus 242 ~~v~~ 246 (594)
.....
T Consensus 81 ~~~~~ 85 (120)
T 3i00_A 81 RRQRE 85 (120)
T ss_dssp HTTCC
T ss_pred HHHhh
Confidence 43333
No 39
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=73.86 E-value=59 Score=30.48 Aligned_cols=21 Identities=19% Similarity=0.175 Sum_probs=12.9
Q ss_pred HHHHHHhhHhHHhhhhhhhhh
Q 045262 319 MKLQLENSQLARRLESTQMLE 339 (594)
Q Consensus 319 keLQ~EKreL~~KL~sAe~~~ 339 (594)
..++.+.+.|.-||..|+.++
T Consensus 73 d~yEeqIk~L~~kLKEAE~RA 93 (155)
T 2efr_A 73 DKYEEEIKVLSDKLKEAETRA 93 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666777777665
No 40
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=72.49 E-value=58 Score=29.74 Aligned_cols=18 Identities=6% Similarity=0.314 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 045262 170 KNLKNMVQMLQDREKNLE 187 (594)
Q Consensus 170 ~~LR~lVeeLqERE~~LE 187 (594)
+.|+.+...+-+|=..+.
T Consensus 28 e~L~~vA~~vd~km~ei~ 45 (138)
T 3hnw_A 28 EYLQRVASYINNKITEFN 45 (138)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 456666666555544433
No 41
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=72.46 E-value=17 Score=28.49 Aligned_cols=46 Identities=28% Similarity=0.299 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHh
Q 045262 272 QILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQL 328 (594)
Q Consensus 272 qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL 328 (594)
+....+.+++..++.+ +|.+.+.+||.+|..|...|.+|+.+...|
T Consensus 3 ~~r~erNr~AA~k~R~-----------rKk~~~~~Le~~~~~L~~~n~~L~~~i~~L 48 (61)
T 1t2k_D 3 RKFLERNRAAASRSRQ-----------KRKVWVQSLEKKAEDLSSLNGQLQSEVTLL 48 (61)
T ss_dssp HHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666677776663 566778888888888888888887775554
No 42
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=72.02 E-value=9.8 Score=32.23 Aligned_cols=71 Identities=21% Similarity=0.329 Sum_probs=43.7
Q ss_pred HHHHHHHHhHHHHHHhhHhHHhhhhhhhhhhcc---hhhhH--HHH-------HHHHHHHHHHhhHHHHHHHHHHhhhhc
Q 045262 310 EAEDLRKSNMKLQLENSQLARRLESTQMLEISV---LEDGE--REA-------LNEMSQRLREENTSLSKEVEKLHADKC 377 (594)
Q Consensus 310 Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~~~---~E~~e--v~~-------i~ee~~~LR~~NedL~kQVEqLq~dRf 377 (594)
|+.+||+....+..+|.-|...++.++..+.-. -|+.. -.. ++..++.+--+--||-.+||.|+
T Consensus 1 Ei~eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r~dLE~kvesL~---- 76 (86)
T 3swk_A 1 EMRELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLARLDLERKVESLQ---- 76 (86)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH----
T ss_pred CHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----
Confidence 356777777777788877777777776654221 11111 122 33333333344467888999986
Q ss_pred chhhHHHHHH
Q 045262 378 AGVEELVYLK 387 (594)
Q Consensus 378 seVEELVYLR 387 (594)
+||.|||
T Consensus 77 ---eEl~fLk 83 (86)
T 3swk_A 77 ---EEIAFLK 83 (86)
T ss_dssp ---HHHHHHT
T ss_pred ---HHHHHHh
Confidence 7899987
No 43
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=71.90 E-value=69 Score=34.15 Aligned_cols=19 Identities=21% Similarity=0.569 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 045262 249 EAAKTKIKLLKKKLRTEAE 267 (594)
Q Consensus 249 E~ar~kir~LqkKl~~~a~ 267 (594)
+..+.+|..||++|.....
T Consensus 116 ~eLe~~i~~lk~~V~~q~~ 134 (390)
T 1deq_A 116 EDLRSRIEILRRKVIEQVQ 134 (390)
T ss_pred HHHHHHHHHHHHHHHHHhH
Confidence 3444555555555554433
No 44
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=71.66 E-value=24 Score=28.03 Aligned_cols=46 Identities=22% Similarity=0.293 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHh
Q 045262 272 QILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQL 328 (594)
Q Consensus 272 qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL 328 (594)
+....+.+++.-.+. ++|.+.+.+|+.+|..|...|..|+.+...|
T Consensus 4 ~rrrerNR~AA~rcR-----------~rKk~~~~~Le~~v~~L~~~n~~L~~ei~~L 49 (63)
T 2wt7_A 4 RIRRERNKMAAAKCR-----------NRRRELTDTLQAETDQLEDEKSALQTEIANL 49 (63)
T ss_dssp HHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556667776665 3577888999999998888888888775444
No 45
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=70.54 E-value=32 Score=29.45 Aligned_cols=77 Identities=26% Similarity=0.356 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 045262 167 QEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVS 246 (594)
Q Consensus 167 ~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ 246 (594)
.=+...-.-|+.|++.=..|++++-.+++ +.. ..+.. .=..+|..|+..|..+..++.+|..++.. +..
T Consensus 16 dRlAsyIdKVR~LEqqN~~Le~~i~~l~~---~~~--~~~~~---~ye~~i~~Lr~~i~~~~~ek~~l~~e~dn---l~~ 84 (93)
T 3s4r_A 16 DRFANLIDKVRFLEQQNKILLAELEQLKG---QGK--SRLGD---LYEEEMRELRRQVDQLTNDKARVEVERDN---LAE 84 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH--HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccC--CCcHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 34556667899999999999999877764 222 12221 23467888999999999999999888776 455
Q ss_pred HHHHHHHH
Q 045262 247 ELEAAKTK 254 (594)
Q Consensus 247 ELE~ar~k 254 (594)
+++..|.|
T Consensus 85 ~~~~~k~K 92 (93)
T 3s4r_A 85 DIMRLREK 92 (93)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 55555544
No 46
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=69.93 E-value=29 Score=30.78 Aligned_cols=24 Identities=42% Similarity=0.603 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHh
Q 045262 302 QRLKVLEAEAEDLRKSNMKLQLEN 325 (594)
Q Consensus 302 q~lkeLE~Ev~ELRr~NkeLQ~EK 325 (594)
.++++|+.||..||+-|..|-.|+
T Consensus 65 ~~v~eLe~everL~~ENq~L~~e~ 88 (104)
T 3s9g_A 65 ARVRELELELDRLRAENLQLLTEN 88 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 357889999999999988887775
No 47
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=69.93 E-value=45 Score=27.48 Aligned_cols=38 Identities=26% Similarity=0.170 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhh
Q 045262 302 QRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLE 339 (594)
Q Consensus 302 q~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~ 339 (594)
++...+|.+|..|.+.+..|+.+....--+|..|+...
T Consensus 34 ~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kL 71 (81)
T 1ic2_A 34 ERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKL 71 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667888888888888888888777766666665543
No 48
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=68.68 E-value=22 Score=29.34 Aligned_cols=57 Identities=21% Similarity=0.323 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHh
Q 045262 252 KTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQL 328 (594)
Q Consensus 252 r~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL 328 (594)
+..||.-|+-++ +.-++.|..|..+|..|+.. ...|..|...||..+..|+.|+..|
T Consensus 13 ~~qNR~AQRafR---eRK~~~i~~LE~~v~~le~~-----------------~~~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 13 KAQNRAAQRAFR---KRKEDHLKALETQVVTLKEL-----------------HSSTTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 445555565555 23345677778888777654 2346788888888888888887654
No 49
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=68.59 E-value=39 Score=30.40 Aligned_cols=21 Identities=19% Similarity=0.118 Sum_probs=11.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHH
Q 045262 214 NMEGRLLNLKIESLQADNRRL 234 (594)
Q Consensus 214 ~~Ei~~L~~kI~sLE~En~RL 234 (594)
...|+.|.+.|+.|..+.+++
T Consensus 14 D~~Ie~Lkreie~lk~ele~l 34 (120)
T 3i00_A 14 DHLIERLYREISGLKAQLENM 34 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666665555554
No 50
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=68.31 E-value=7.4 Score=42.73 Aligned_cols=13 Identities=23% Similarity=-0.031 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHH
Q 045262 18 VAFVFSLAGIFVV 30 (594)
Q Consensus 18 ~ava~S~A~~~~~ 30 (594)
.-.|+-+|||.+.
T Consensus 119 ~e~a~~LAAL~lQ 131 (575)
T 2i1j_A 119 PETSVLLASYAVQ 131 (575)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3457778887764
No 51
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=68.10 E-value=18 Score=31.85 Aligned_cols=30 Identities=30% Similarity=0.400 Sum_probs=24.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 213 NNMEGRLLNLKIESLQADNRRLEAQVADHA 242 (594)
Q Consensus 213 k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~ 242 (594)
.+.++..|..+|.+|+.||.+|..++..+-
T Consensus 10 ~~e~~~~lr~ei~~Le~E~~rLr~~~~~LE 39 (100)
T 1go4_E 10 SREEADTLRLKVEELEGERSRLEEEKRMLE 39 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345888899999999999999988776543
No 52
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=67.99 E-value=44 Score=29.67 Aligned_cols=8 Identities=38% Similarity=0.434 Sum_probs=0.0
Q ss_pred HHHHHHHH
Q 045262 253 TKIKLLKK 260 (594)
Q Consensus 253 ~kir~Lqk 260 (594)
.|+.+|+.
T Consensus 15 ~K~eel~~ 22 (129)
T 3tnu_B 15 TKYEELQQ 22 (129)
T ss_dssp --------
T ss_pred HHHHHHHH
Confidence 44444443
No 53
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=67.31 E-value=15 Score=28.04 Aligned_cols=37 Identities=27% Similarity=0.336 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 045262 201 TIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQ 237 (594)
Q Consensus 201 a~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~q 237 (594)
+.+.+||.+.+........|.-+|+.|+.||.-|+.-
T Consensus 3 aYl~eLE~r~k~le~~naeLEervstLq~EN~mLRqv 39 (42)
T 2oqq_A 3 AYLSELENRVKDLENKNSELEERLSTLQNENQMLRHI 39 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4566777777766667777889999999999888753
No 54
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=66.97 E-value=71 Score=28.58 Aligned_cols=31 Identities=19% Similarity=0.200 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHhHHHHHHhhHhHHhhhhh
Q 045262 305 KVLEAEAEDLRKSNMKLQLENSQLARRLEST 335 (594)
Q Consensus 305 keLE~Ev~ELRr~NkeLQ~EKreL~~KL~sA 335 (594)
..|..|+..||..+..|+.-.|+|-.+-|.-
T Consensus 38 ~~Lq~El~~lr~~~~~l~~~iReLEq~NDDL 68 (111)
T 2v66_B 38 SVLEDDLSQTRAIKEQLHKYVRELEQANDDL 68 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence 3344444444444444444444444444333
No 55
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=66.72 E-value=35 Score=30.43 Aligned_cols=14 Identities=21% Similarity=0.539 Sum_probs=3.2
Q ss_pred HHHHHHHHHHHHHH
Q 045262 250 AAKTKIKLLKKKLR 263 (594)
Q Consensus 250 ~ar~kir~LqkKl~ 263 (594)
.+|.+|.+|++.|+
T Consensus 35 ~~k~Ei~elrr~iq 48 (131)
T 3tnu_A 35 SGKSEISELRRTMQ 48 (131)
T ss_dssp ------CHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 56
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=66.60 E-value=68 Score=28.21 Aligned_cols=31 Identities=10% Similarity=0.167 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHhhhhcc
Q 045262 348 REALNEMSQRLREENTSLSKEVEKLHADKCA 378 (594)
Q Consensus 348 v~~i~ee~~~LR~~NedL~kQVEqLq~dRfs 378 (594)
+..++...+.+-.++..|..++..|+..|..
T Consensus 70 l~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~ 100 (107)
T 2no2_A 70 LQVLQGSLETSAQSEANWAAEFAELEKERDS 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455555555566666666666555543
No 57
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=66.03 E-value=1.2e+02 Score=31.15 Aligned_cols=20 Identities=30% Similarity=0.368 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 045262 297 TQSRLQRLKVLEAEAEDLRK 316 (594)
Q Consensus 297 ~ekKlq~lkeLE~Ev~ELRr 316 (594)
+-+-.+.|++++.+|.++||
T Consensus 452 ~~~~~~~~~~~~~~~~~~~~ 471 (471)
T 3mq9_A 452 ITTLNHKLQDASAEVERLRR 471 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 33334446667777766664
No 58
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=65.47 E-value=5.6 Score=27.97 Aligned_cols=28 Identities=36% Similarity=0.496 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 045262 218 RLLNLKIESLQADNRRLEAQVADHAKTV 245 (594)
Q Consensus 218 ~~L~~kI~sLE~En~RLq~qv~e~~~v~ 245 (594)
+.|+.-+.+||+||+.|.+.+.+..+-+
T Consensus 2 dqlnallasleaenkqlkakveellakv 29 (31)
T 1p9i_A 2 DQLNALLASLEAENKQLKAKVEELLAKV 29 (31)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4577788999999999999888776543
No 59
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=65.30 E-value=57 Score=27.82 Aligned_cols=49 Identities=14% Similarity=0.151 Sum_probs=29.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHH----HHHHHHhHHHHHHHHHHHHHHHHHHH
Q 045262 214 NMEGRLLNLKIESLQADNRRLEA----QVADHAKTVSELEAAKTKIKLLKKKL 262 (594)
Q Consensus 214 ~~Ei~~L~~kI~sLE~En~RLq~----qv~e~~~v~~ELE~ar~kir~LqkKl 262 (594)
.+||+.|+.+-..|..+++-++. -..+...+..|...|..+++.|=.|+
T Consensus 26 qmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~ 78 (81)
T 2jee_A 26 QMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45666666666666666666554 33444555666677777777665554
No 60
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=64.93 E-value=59 Score=36.09 Aligned_cols=38 Identities=24% Similarity=0.447 Sum_probs=19.6
Q ss_pred HHHhHHHHH-HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 045262 240 DHAKTVSEL-EAAKTKIKLLKKKLRTEAEQNREQILAVQERVT 281 (594)
Q Consensus 240 e~~~v~~EL-E~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~ 281 (594)
+...+..|+ +..+.+|--|+.+|+... .+|.+|+.-|.
T Consensus 103 dNdNtynE~S~ELRRrIqyLKekVdnQl----snIrvLQsnLe 141 (562)
T 3ghg_A 103 NRDNTYNRVSEDLRSRIEVLKRKVIEKV----QHIQLLQKNVR 141 (562)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 444444555 255566666666666555 33444444333
No 61
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=64.83 E-value=68 Score=27.62 Aligned_cols=92 Identities=15% Similarity=0.147 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH----HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhc
Q 045262 217 GRLLNLKIESLQADNRRLEAQVADHAKTVSEL----EAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAA 292 (594)
Q Consensus 217 i~~L~~kI~sLE~En~RLq~qv~e~~~v~~EL----E~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~ 292 (594)
++....+|..|..+.....+.+.++-.-.+++ ..+-..|..|++|++. ...++..++.++...+.+
T Consensus 4 MdaIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~----lE~eld~~ee~L~ea~~k------ 73 (101)
T 3u1c_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRV----TEDSRDQVLEELHKSEDS------ 73 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH------
Confidence 45566777777777666665555544333333 2233455556665552 222333333333332221
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 045262 293 IDPDTQSRLQRLKVLEAEAEDLRKSNMKLQ 322 (594)
Q Consensus 293 ~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ 322 (594)
++..-+...+-|.+|.-|-|.+--|+
T Consensus 74 ----Lee~ek~~~~aE~ev~~L~RriqllE 99 (101)
T 3u1c_A 74 ----LLFAEENAAKAESEVASLNRRIQLVE 99 (101)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 22222345566777777766655554
No 62
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=63.20 E-value=71 Score=27.28 Aligned_cols=29 Identities=24% Similarity=0.114 Sum_probs=20.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 214 NMEGRLLNLKIESLQADNRRLEAQVADHA 242 (594)
Q Consensus 214 ~~Ei~~L~~kI~sLE~En~RLq~qv~e~~ 242 (594)
|...-.+-.+|-.||.+|+.|+.++....
T Consensus 15 NdRlAsyIdKVR~LEqqN~~Le~~i~~l~ 43 (93)
T 3s4r_A 15 NDRFANLIDKVRFLEQQNKILLAELEQLK 43 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444555678899999999987765443
No 63
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=63.17 E-value=11 Score=30.22 Aligned_cols=32 Identities=38% Similarity=0.548 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHH
Q 045262 299 SRLQRLKVLEAEAEDLRKSNMKLQLENSQLAR 330 (594)
Q Consensus 299 kKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~ 330 (594)
+|.+.+.+||.+|.+|...|..|..+...|..
T Consensus 27 RK~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~ 58 (63)
T 2dgc_A 27 RKLQRMKQLEDKVEELLSKNYHLENEVARLKK 58 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778899999999999888888877666543
No 64
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=62.66 E-value=57 Score=29.28 Aligned_cols=23 Identities=13% Similarity=-0.028 Sum_probs=13.1
Q ss_pred HHHHHhhhhhhHHHHHHHHHHHH
Q 045262 207 QNRLKLNNMEGRLLNLKIESLQA 229 (594)
Q Consensus 207 e~~L~~k~~Ei~~L~~kI~sLE~ 229 (594)
|..|..+..+|+.|..+|..+++
T Consensus 37 EeaL~~Kq~~idelk~ei~q~~~ 59 (110)
T 2v4h_A 37 EEALVAKQELIDKLKEEAEQHKI 59 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555666666666666555
No 65
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=62.17 E-value=25 Score=29.45 Aligned_cols=27 Identities=26% Similarity=0.185 Sum_probs=23.4
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 045262 204 MELQNRLKLNNMEGRLLNLKIESLQAD 230 (594)
Q Consensus 204 ~ELe~~L~~k~~Ei~~L~~kI~sLE~E 230 (594)
.+|.+.|..+..||+.|+.-|++|.+-
T Consensus 6 KeL~~kl~~Kq~EI~rLnvlvgslR~K 32 (74)
T 2q6q_A 6 KELNFKLREKQNEIFELKKIAETLRSK 32 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478888999999999999999998764
No 66
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=61.86 E-value=27 Score=27.31 Aligned_cols=31 Identities=26% Similarity=0.225 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhHhH
Q 045262 299 SRLQRLKVLEAEAEDLRKSNMKLQLENSQLA 329 (594)
Q Consensus 299 kKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~ 329 (594)
.|..-+.+||.+|..|...|..|..+...|.
T Consensus 19 RKk~~~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 19 KKKEYVKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556788999999988888888888877664
No 67
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=61.64 E-value=47 Score=30.66 Aligned_cols=68 Identities=16% Similarity=0.120 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHH----HHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhh
Q 045262 270 REQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRL----KVLEAEAEDLRKSNMKLQLENSQLARRLESTQM 337 (594)
Q Consensus 270 K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~l----keLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~ 337 (594)
-+.+..|..++...+.--.++-.+..++..|+..+ ..-|..+...-....+|+.+.+.+.-.|-+-++
T Consensus 51 eEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~ 122 (147)
T 2b9c_A 51 EEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLED 122 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 33444444444433333333334445555554432 112344444555566666666655555444443
No 68
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=61.54 E-value=1.1e+02 Score=28.69 Aligned_cols=29 Identities=7% Similarity=0.154 Sum_probs=16.1
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045262 241 HAKTVSELEAAKTKIKLLKKKLRTEAEQN 269 (594)
Q Consensus 241 ~~~v~~ELE~ar~kir~LqkKl~~~a~q~ 269 (594)
...-.+||...|+++..+|+.+++--.+.
T Consensus 55 n~~HQKEi~~Lrae~~~~QRn~~K~~~~L 83 (167)
T 4gkw_A 55 NVAHQKEIGKLRAELGTAQRNLEKADQLL 83 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33444556666666666666665544433
No 69
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=60.41 E-value=40 Score=26.52 Aligned_cols=30 Identities=27% Similarity=0.431 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhHh
Q 045262 299 SRLQRLKVLEAEAEDLRKSNMKLQLENSQL 328 (594)
Q Consensus 299 kKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL 328 (594)
+|.+.+.+||.+|.+|...|..|..+...|
T Consensus 19 rKk~~~~~Le~~v~~L~~~n~~L~~~v~~L 48 (62)
T 1jnm_A 19 RKLERIARLEEKVKTLKAQNSELASTANML 48 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788899999998888888888776655
No 70
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=59.67 E-value=39 Score=28.93 Aligned_cols=53 Identities=30% Similarity=0.408 Sum_probs=28.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hhchhhHHHHHHHHHHHHhhhhhhHHHHHH
Q 045262 164 DCEQEVKNLKNMVQMLQDREKNLEVELLEY-YGLKEQETIVMELQNRLKLNNMEGRLLNLK 223 (594)
Q Consensus 164 d~e~EI~~LR~lVeeLqERE~~LE~ELLEy-y~LKEQEa~v~ELe~~L~~k~~Ei~~L~~k 223 (594)
+.-+||..||-.|.+|.. |=+.| .-||-.-+.+..|+.+|..+.+||..|..+
T Consensus 23 ~L~qEi~~Lr~kv~elEn-------ErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~ 76 (81)
T 3qh9_A 23 ELLQELRHLKIKVEELEN-------ERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQ 76 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 455777777777777653 33333 223334455555555565555555554433
No 71
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=58.11 E-value=1.2e+02 Score=28.41 Aligned_cols=121 Identities=17% Similarity=0.211 Sum_probs=67.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045262 164 DCEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAK 243 (594)
Q Consensus 164 d~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~ 243 (594)
+++.++..+|..+..++.|-..|+..=-+|..| .........+..+|.+.+.+-..
T Consensus 17 ~LeD~L~~~R~el~~~~~ri~~lE~~r~~~~~l------------------------~~~~~~~~~e~~~L~~~l~~E~~ 72 (154)
T 2ocy_A 17 HLEEQLNKSLKTIASQKAAIENYNQLKEDYNTL------------------------KRELSDRDDEVKRLREDIAKENE 72 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHH------------------------HTHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHhhhhHHHHHHHHHHHHHHH
Confidence 457788888888888888777766432222222 12233355555556555555555
Q ss_pred HHHHHHHHHHHH----HHHHHHHH----HHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHH
Q 045262 244 TVSELEAAKTKI----KLLKKKLR----TEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLR 315 (594)
Q Consensus 244 v~~ELE~ar~ki----r~LqkKl~----~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELR 315 (594)
.+.+.|..+.++ ..|-.-+= .....++.+-..++.++..|+.+- .-+-..+..|...+.+|+
T Consensus 73 ~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql----------~e~~~~l~~lq~ql~~LK 142 (154)
T 2ocy_A 73 LRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQL----------REKDTLLDTLTLQLKNLK 142 (154)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Confidence 555444443332 22222222 222334555667777787777663 223345666888888888
Q ss_pred HHh
Q 045262 316 KSN 318 (594)
Q Consensus 316 r~N 318 (594)
...
T Consensus 143 ~v~ 145 (154)
T 2ocy_A 143 KVM 145 (154)
T ss_dssp HTT
T ss_pred HHH
Confidence 754
No 72
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=58.09 E-value=83 Score=26.54 Aligned_cols=37 Identities=8% Similarity=0.181 Sum_probs=24.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 045262 213 NNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELE 249 (594)
Q Consensus 213 k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE 249 (594)
...+...+..++..|..+...|+.++.++..+..||+
T Consensus 11 ~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~ 47 (117)
T 2zqm_A 11 MLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIE 47 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566666667777777777777777776666665
No 73
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=57.57 E-value=60 Score=28.11 Aligned_cols=68 Identities=21% Similarity=0.342 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhH
Q 045262 255 IKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQLA 329 (594)
Q Consensus 255 ir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~ 329 (594)
+++|.+.+ ..-+++++..||++=-.|+-......+ =.+|++...+||.++..|.+....|..|+..+.
T Consensus 8 VreLN~~L---~gls~eev~~lKq~RRtlKNRgyAq~C----R~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~~~~ 75 (90)
T 2wt7_B 8 VRELNRHL---RGFTKDEVIRLKQKRRTLKNRGYAQSC----RYKRVQQKHHLENEKTQLIQQVEQLKQEVSRLA 75 (90)
T ss_dssp HHHHHTTC---TTCCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH---cCCCHHHHHHHHHHHHhhhhhHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444 255677788777777777766543322 146777788899998888888888887776653
No 74
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=57.40 E-value=1.1e+02 Score=33.83 Aligned_cols=12 Identities=42% Similarity=0.534 Sum_probs=8.0
Q ss_pred CCccchhhHHhh
Q 045262 115 NSYLLPEFNELV 126 (594)
Q Consensus 115 d~~lLpEf~dl~ 126 (594)
+..|=|+|-+-+
T Consensus 255 ~~~L~peF~~~l 266 (592)
T 1f5n_A 255 DEELDPEFVQQV 266 (592)
T ss_dssp GGGSCHHHHHHH
T ss_pred hhhCCHHHHHHH
Confidence 456778887644
No 75
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=57.16 E-value=93 Score=26.70 Aligned_cols=26 Identities=23% Similarity=0.277 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 167 QEVKNLKNMVQMLQDREKNLEVELLE 192 (594)
Q Consensus 167 ~EI~~LR~lVeeLqERE~~LE~ELLE 192 (594)
.++..|..-+..|+.-|.+|-.+|.+
T Consensus 4 ~~~~~l~~eL~~l~~eE~~L~~eL~~ 29 (96)
T 3q8t_A 4 SDSEQLQRELKELALEEERLIQELED 29 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888888887776654
No 76
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=55.49 E-value=1.2e+02 Score=27.55 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 045262 297 TQSRLQRLKVLEAEAEDLRKSNMKLQL 323 (594)
Q Consensus 297 ~ekKlq~lkeLE~Ev~ELRr~NkeLQ~ 323 (594)
|.+=.+.|++.+.||+.||+-|-.|+-
T Consensus 80 I~~Lnq~Lq~a~ae~erlr~~~~~~~~ 106 (121)
T 3mq7_A 80 ITTLNHKLQDASAEVERLRRENQVLSV 106 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhchhhhh
Confidence 333345577788888888887765543
No 77
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A
Probab=55.23 E-value=3.1e+02 Score=32.10 Aligned_cols=61 Identities=25% Similarity=0.221 Sum_probs=40.2
Q ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 045262 169 VKNLKNMVQ-------MLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEA 236 (594)
Q Consensus 169 I~~LR~lVe-------eLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~ 236 (594)
-+.|..-|+ .-||.+.+-+++.+ ||++ -..||+|--.-.++.+..+.++-.||+++...+.
T Consensus 651 rd~LqkSVqlAiEItT~sqEa~Ar~~A~~~------eQea-~g~Lerqki~d~a~aE~~r~~Llel~a~s~aves 718 (861)
T 2zuo_A 651 RDALQRSVQLAIEITTNSQEAAAKHEAQRL------EQEA-RGRLERQKILDQSEAEKARKELLELEAMSMAVES 718 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhHHHHH------HHHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh
Confidence 345555555 56777778777765 4555 4556666556667777777777778887777664
No 78
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=55.05 E-value=22 Score=29.92 Aligned_cols=44 Identities=25% Similarity=0.313 Sum_probs=36.4
Q ss_pred hhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 197 KEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVAD 240 (594)
Q Consensus 197 KEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e 240 (594)
++-+-.|..|+..+.+++.-.+.|+..|-+|--||.-|+..+..
T Consensus 28 ~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIENNlL~~rl~~ 71 (75)
T 3a7o_A 28 KSKEQEIRRLKEVIALKNKNTERLNDELISGTIENNVLQQKLSD 71 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHHHHHHHHHHHH
Confidence 33445678889999999999999999999999999999877654
No 79
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=54.94 E-value=1.9e+02 Score=30.83 Aligned_cols=12 Identities=17% Similarity=-0.047 Sum_probs=4.9
Q ss_pred hhhhhHHHHHHH
Q 045262 213 NNMEGRLLNLKI 224 (594)
Q Consensus 213 k~~Ei~~L~~kI 224 (594)
.+.++..|...|
T Consensus 53 ~ts~v~~Lvk~i 64 (409)
T 1m1j_C 53 STGSIEYLIQHI 64 (409)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 334444444333
No 80
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=54.80 E-value=9.2 Score=42.00 Aligned_cols=12 Identities=17% Similarity=0.274 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHH
Q 045262 168 EVKNLKNMVQML 179 (594)
Q Consensus 168 EI~~LR~lVeeL 179 (594)
||..++..-++=
T Consensus 301 e~qqm~~~a~e~ 312 (575)
T 2i1j_A 301 DVQQMKAQAREE 312 (575)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 445555444433
No 81
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=53.76 E-value=1.4e+02 Score=28.09 Aligned_cols=22 Identities=32% Similarity=0.327 Sum_probs=12.9
Q ss_pred HHHHHHHhHHHHHHhhHhHHhh
Q 045262 311 AEDLRKSNMKLQLENSQLARRL 332 (594)
Q Consensus 311 v~ELRr~NkeLQ~EKreL~~KL 332 (594)
+..+...+..||.||.+|+.|+
T Consensus 112 ~n~lE~kl~kLq~EN~~LV~RW 133 (152)
T 3a7p_A 112 NNVLQQKLSDLKKEHSQLVARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445566777777776664
No 82
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=53.30 E-value=42 Score=29.84 Aligned_cols=65 Identities=15% Similarity=0.110 Sum_probs=39.8
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 045262 204 MELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNRE 271 (594)
Q Consensus 204 ~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~ 271 (594)
..|-|+=..-.=+|+.|+.+++-+++....++.+..+.. .+++..|-.+..|+.++.....+.++
T Consensus 19 AQLDNEKsal~YqVdlLKD~LEe~eE~~aql~Re~~eK~---re~e~~Kr~~~~L~~~~~~lk~~L~q 83 (103)
T 4h22_A 19 AQLDNEKTNFMYQVDTLKDMLLELEEQLAESRRQYEEKN---KEFEREKHAHSILQFQFAEVKEALKQ 83 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555556666888888888888888777776665553 34555555555555555444444433
No 83
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=51.15 E-value=1.2e+02 Score=25.97 Aligned_cols=47 Identities=17% Similarity=0.201 Sum_probs=24.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH----HHHHHHHHHHHHHH
Q 045262 217 GRLLNLKIESLQADNRRLEAQVADHAKTVSELE----AAKTKIKLLKKKLR 263 (594)
Q Consensus 217 i~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE----~ar~kir~LqkKl~ 263 (594)
.+....+|..|..+.....+.+.++-.-.++.+ .+-..+..|++|++
T Consensus 4 md~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq 54 (101)
T 3u59_A 4 MEAIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLK 54 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 345666777777666665555544433333332 22334555555554
No 84
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=50.62 E-value=1.2e+02 Score=25.79 Aligned_cols=63 Identities=16% Similarity=0.300 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHh
Q 045262 256 KLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLENSQL 328 (594)
Q Consensus 256 r~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL 328 (594)
..|+++++....|+.+++..|++-=..|...... ++. .+..|+.|..+|.....-|+.-+.||
T Consensus 10 DKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~K-------L~~---mi~~l~~E~~~l~~ni~~lk~K~~EL 72 (78)
T 3iv1_A 10 DKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQK-------LEE---MVTRLDQEVAEVDKNIELLKKKDEEL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHH-------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888888888888888888877777766432 221 24556666666666666665555555
No 85
>4abm_A Charged multivesicular BODY protein 4B; cell cycle, protein transport, HIV-1; 1.80A {Homo sapiens}
Probab=50.34 E-value=66 Score=26.89 Aligned_cols=62 Identities=18% Similarity=0.169 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH---HHH--HHHHHHHhHHHHHHHHHHHHHH
Q 045262 221 NLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLL---KKK--LRTEAEQNREQILAVQERVTKL 283 (594)
Q Consensus 221 ~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~L---qkK--l~~~a~q~K~qi~~Lkq~v~~L 283 (594)
+..+..|+.--..|+.++.+.....+++- .++|.+.| ++| ......++-.++..|.+++..|
T Consensus 12 r~~~d~L~kkq~~L~~~i~~e~~~Ak~~~-~knK~~Al~aLkrKK~~E~qL~q~~~ql~~LE~q~~~i 78 (79)
T 4abm_A 12 RDTEEMLSKKQEFLEKKIEQELTAAKKHG-TKNKRAALQALKRKKRYEKQLAQIDGTLSTIEFQREAL 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33333344334444444443333333332 33344443 332 3466677778888888887765
No 86
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=49.56 E-value=22 Score=26.27 Aligned_cols=30 Identities=23% Similarity=0.390 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhHhHHhh
Q 045262 303 RLKVLEAEAEDLRKSNMKLQLENSQLARRL 332 (594)
Q Consensus 303 ~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL 332 (594)
+++.||..|+||-..|..|+.|-.-|-..|
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll 31 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKKN 31 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 567788888888888888888766654433
No 87
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=49.30 E-value=74 Score=28.03 Aligned_cols=31 Identities=26% Similarity=0.363 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhHhHHhhhh
Q 045262 304 LKVLEAEAEDLRKSNMKLQLENSQLARRLES 334 (594)
Q Consensus 304 lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~s 334 (594)
+..|-.++.+|++-|.+|-.+|..|-.+|.-
T Consensus 14 ~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 14 ADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555666666666666666555554
No 88
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=49.06 E-value=34 Score=30.44 Aligned_cols=51 Identities=16% Similarity=0.079 Sum_probs=42.5
Q ss_pred chhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 045262 196 LKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVS 246 (594)
Q Consensus 196 LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ 246 (594)
|.|++-.+.++.+++..|.-+++.+...+..|+.+..-|++++.+-..+..
T Consensus 39 LEe~eE~~aql~Re~~eK~re~e~~Kr~~~~L~~~~~~lk~~L~qRD~LI~ 89 (103)
T 4h22_A 39 LLELEEQLAESRRQYEEKNKEFEREKHAHSILQFQFAEVKEALKQREEMLE 89 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667788888999999999999999999999999999999887655544
No 89
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=48.92 E-value=1.8e+02 Score=27.45 Aligned_cols=63 Identities=14% Similarity=0.214 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHH
Q 045262 166 EQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRL 234 (594)
Q Consensus 166 e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RL 234 (594)
...|..|+.....|+.|=..|+.+| ++....+..|.-++..-+.+...+..++..|+.||..|
T Consensus 67 ~~~I~~L~~El~~l~~ki~dLeeel------~eK~K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L 129 (152)
T 3a7p_A 67 LNTLAILQKELKSKEQEIRRLKEVI------ALKNKNTERLNAALISGTIENNVLQQKLSDLKKEHSQL 129 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666665555555443 34444455555555555555555555555555555544
No 90
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=48.82 E-value=2.9e+02 Score=29.96 Aligned_cols=15 Identities=33% Similarity=0.569 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCc
Q 045262 39 PSLPPPSSGFSDHGS 53 (594)
Q Consensus 39 ~~~~~~~~~~~~~~~ 53 (594)
|++.|.+|++|+.|.
T Consensus 31 ~~~~~~~~~~~~~~~ 45 (464)
T 1m1j_B 31 PTLRPVAPPISGTGY 45 (464)
T ss_dssp ---------------
T ss_pred CCCCCCCCCcCCCCc
Confidence 566666666675555
No 91
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}
Probab=48.39 E-value=1.7e+02 Score=27.25 Aligned_cols=63 Identities=19% Similarity=0.179 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHH----HHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 045262 168 EVKNLKNMVQMLQDREKNLEVELLEYYGLKEQETI----VMELQNRLKLNNMEGRLLNLKIESLQAD 230 (594)
Q Consensus 168 EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQEa~----v~ELe~~L~~k~~Ei~~L~~kI~sLE~E 230 (594)
||..||.-...+|..=.+-+..|-.-..-+-|.+. +.|||..|+.|..=++-|..+|..|..|
T Consensus 61 Ei~~Lrae~~~~QRn~~K~~~~Lkrn~~qQnQQSlDiRKLrELEADLKEKDsMVe~LT~TiG~LrKE 127 (167)
T 4gkw_A 61 EIGKLRAELGTAQRNLEKADQLLKRNSQQQNQQSLDMRKLGELEADLKEKDSMVESLTETIGILRKE 127 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhhhHHHhHhhhhHHHHHHHHhHHhhhhHHHHHHHHHHHHHHHH
Confidence 45555544444443333333333333222334332 6788888888888888888888877654
No 92
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=48.25 E-value=27 Score=27.84 Aligned_cols=30 Identities=23% Similarity=0.329 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHhhHh
Q 045262 299 SRLQRLKVLEAEAEDLRKSNMKLQLENSQL 328 (594)
Q Consensus 299 kKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL 328 (594)
+|.+.+.+|+.++.+|...|.+|..+...|
T Consensus 20 KKk~~~~~le~~~~~L~~~N~~L~~~i~~L 49 (63)
T 1ci6_A 20 KKRAEQEALTGECKELEKKNEALKERADSL 49 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777777776654443
No 93
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=47.80 E-value=1.1e+02 Score=24.60 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhh
Q 045262 303 RLKVLEAEAEDLRKSNMKLQLENS 326 (594)
Q Consensus 303 ~lkeLE~Ev~ELRr~NkeLQ~EKr 326 (594)
.++.-..|+.||||....|+-|..
T Consensus 50 ~l~~~k~Ei~elrr~iq~L~~el~ 73 (77)
T 3trt_A 50 ALRQAKQESTEYRRQVQSLTMEVD 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355666778888888877777644
No 94
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=47.61 E-value=20 Score=26.54 Aligned_cols=26 Identities=35% Similarity=0.456 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhHh
Q 045262 303 RLKVLEAEAEDLRKSNMKLQLENSQL 328 (594)
Q Consensus 303 ~lkeLE~Ev~ELRr~NkeLQ~EKreL 328 (594)
+++.||.+|+||=..|..|+.|-.-|
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL 27 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARL 27 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45678888888877777777775554
No 95
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=47.52 E-value=86 Score=29.74 Aligned_cols=60 Identities=13% Similarity=0.208 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHh
Q 045262 249 EAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSN 318 (594)
Q Consensus 249 E~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~N 318 (594)
+.=+.+++.|..+.+......++++...++++..|-..+ ..|.+ +++.|-.|+.+||...
T Consensus 70 ~EQq~ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~----~~Dea------kI~aL~~Ei~~Lr~qL 129 (175)
T 3lay_A 70 TEQQATAQKIYDDYYTQTSALRQQLISKRYEYNALLTAS----SPDTA------KINAVAKEMESLGQKL 129 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS----SCCHH------HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CCCHH------HHHHHHHHHHHHHHHH
Confidence 334556666666666666666777766666665544321 22222 3566777777666543
No 96
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=46.85 E-value=45 Score=25.40 Aligned_cols=30 Identities=20% Similarity=0.253 Sum_probs=21.4
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 237 QVADHAKTVSELEAAKTKIKLLKKKLRTEA 266 (594)
Q Consensus 237 qv~e~~~v~~ELE~ar~kir~LqkKl~~~a 266 (594)
-+..+.+|-.|++.++.+|..||+|++..-
T Consensus 7 l~qkI~kVdrEI~Kte~kI~~lqkKlkeLe 36 (42)
T 2l5g_B 7 LIQNMDRVDREITMVEQQISKLKKKQQQLE 36 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355667777788888888888887776543
No 97
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=45.07 E-value=1.4e+02 Score=25.24 Aligned_cols=57 Identities=16% Similarity=0.300 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 045262 227 LQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKL 283 (594)
Q Consensus 227 LE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~L 283 (594)
|.+....-++++.-+.....||..-+.|+..+=.+++.+.......|..|+.+...|
T Consensus 16 l~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL 72 (78)
T 3iv1_A 16 MKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKKKDEEL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666677777777777777666666666666666665555554444
No 98
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=44.80 E-value=56 Score=27.28 Aligned_cols=25 Identities=40% Similarity=0.391 Sum_probs=20.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 216 EGRLLNLKIESLQADNRRLEAQVAD 240 (594)
Q Consensus 216 Ei~~L~~kI~sLE~En~RLq~qv~e 240 (594)
|++.|..+|..||.+...|++++++
T Consensus 23 Ele~le~~Ie~LE~~i~~le~~lad 47 (89)
T 2lw1_A 23 ELEQLPQLLEDLEAKLEALQTQVAD 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 5677888888888888888888875
No 99
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=43.28 E-value=54 Score=30.17 Aligned_cols=62 Identities=18% Similarity=0.199 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchhhHH----HHHHHHHHHHh----hhhhhHHHHHHHHHHHHHHHH
Q 045262 172 LKNMVQMLQDREKNLEVELLEYYGLKEQET----IVMELQNRLKL----NNMEGRLLNLKIESLQADNRR 233 (594)
Q Consensus 172 LR~lVeeLqERE~~LE~ELLEyy~LKEQEa----~v~ELe~~L~~----k~~Ei~~L~~kI~sLE~En~R 233 (594)
.-+++.+|+|...+|+.=..+-..|++--- .+..++.++.. -.+.+|.|.+.+.+|+++.+-
T Consensus 4 vtSL~~ELqEsqskL~~Ae~~k~~Leek~~~~e~~~~~~~~Elee~kqq~~~~~d~L~lQ~esmeaalkm 73 (130)
T 3cl3_D 4 ASGSLGELQESQSRLEAATKECQALEGRARAASEQARQLESEREALQQQHSVQVDQLRMQGQSVEAALRM 73 (130)
T ss_dssp -----------------------------------------------CTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999887777766655322 23444555543 457889999999999988643
No 100
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=43.20 E-value=3.7e+02 Score=29.56 Aligned_cols=41 Identities=12% Similarity=0.105 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 045262 244 TVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQ 284 (594)
Q Consensus 244 v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq 284 (594)
+.+|.++.|.++...+.+......+-.+.+...++.++.-+
T Consensus 46 i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~~AeY~ 86 (497)
T 3iox_A 46 LTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKDLADYP 86 (497)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666666666666655555555555555554444433
No 101
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=42.97 E-value=49 Score=27.60 Aligned_cols=37 Identities=16% Similarity=0.177 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 045262 201 TIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQ 237 (594)
Q Consensus 201 a~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~q 237 (594)
..+.+||-+|+--..-|+.|+..|...+.+..+|+.+
T Consensus 14 ~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~q 50 (78)
T 3efg_A 14 ARLVELETRLSFQEQALTELSEALADARLTGARNAEL 50 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555554444444444554444444444444433
No 102
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=42.94 E-value=70 Score=26.77 Aligned_cols=24 Identities=17% Similarity=0.331 Sum_probs=10.3
Q ss_pred hhhHHHHHHHHHHHHhhhhhhHHH
Q 045262 197 KEQETIVMELQNRLKLNNMEGRLL 220 (594)
Q Consensus 197 KEQEa~v~ELe~~L~~k~~Ei~~L 220 (594)
+.++..|.+|+.+|..+..+|..|
T Consensus 36 r~kd~~I~eLEk~L~ekd~eI~~L 59 (72)
T 3nmd_A 36 RQRDALIDELELELDQKDELIQML 59 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433
No 103
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=42.89 E-value=76 Score=26.86 Aligned_cols=30 Identities=7% Similarity=0.063 Sum_probs=15.9
Q ss_pred HHHHHHHHHhhHHHHHHHHHHhh---hhcchhh
Q 045262 352 NEMSQRLREENTSLSKEVEKLHA---DKCAGVE 381 (594)
Q Consensus 352 ~ee~~~LR~~NedL~kQVEqLq~---dRfseVE 381 (594)
..|+..||=.+|.+..+|++|+. +++.++.
T Consensus 33 q~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dLD 65 (83)
T 2xdj_A 33 QSDIDSLRGQIQENQYQLNQVVERQKQILLQID 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555666555555554 4444443
No 104
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=42.69 E-value=58 Score=25.78 Aligned_cols=27 Identities=15% Similarity=0.293 Sum_probs=21.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 214 NMEGRLLNLKIESLQADNRRLEAQVAD 240 (594)
Q Consensus 214 ~~Ei~~L~~kI~sLE~En~RLq~qv~e 240 (594)
...+..|..++..|+.+|..|..++..
T Consensus 22 k~~~~~Le~~v~~L~~~n~~L~~ei~~ 48 (63)
T 2wt7_A 22 RELTDTLQAETDQLEDEKSALQTEIAN 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788888888888888888887754
No 105
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=42.52 E-value=30 Score=24.71 Aligned_cols=24 Identities=46% Similarity=0.638 Sum_probs=21.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 165 CEQEVKNLKNMVQMLQDREKNLEV 188 (594)
Q Consensus 165 ~e~EI~~LR~lVeeLqERE~~LE~ 188 (594)
+++|+..|...|++||+|=-+||-
T Consensus 4 lee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 4 LEEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999888874
No 106
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=42.00 E-value=30 Score=27.02 Aligned_cols=30 Identities=27% Similarity=0.307 Sum_probs=23.0
Q ss_pred hhHHHHHHHHHHHHHHhhHHHHHHHHHHhh
Q 045262 345 DGEREALNEMSQRLREENTSLSKEVEKLHA 374 (594)
Q Consensus 345 ~~ev~~i~ee~~~LR~~NedL~kQVEqLq~ 374 (594)
...+++++.|...||..++.|.++++.|+.
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~~el~~ 47 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEENKKLKA 47 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888888888888765
No 107
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=41.98 E-value=62 Score=30.81 Aligned_cols=34 Identities=12% Similarity=0.065 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 045262 226 SLQADNRRLEAQVADHAKTVSELEAAKTKIKLLK 259 (594)
Q Consensus 226 sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~Lq 259 (594)
..+.+-+|.+...........+++.++..+...+
T Consensus 78 ~a~~~~~r~~~L~~~g~~s~~~~~~a~~~~~~a~ 111 (277)
T 2f1m_A 78 IAQLTVNRYQKLLGTQYISKQEYDQALADAQQAN 111 (277)
T ss_dssp HHHHHHHHHHTTTTSTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHH
Confidence 3344445555444445555566666655554443
No 108
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=40.51 E-value=54 Score=25.62 Aligned_cols=29 Identities=24% Similarity=0.176 Sum_probs=19.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 214 NMEGRLLNLKIESLQADNRRLEAQVADHA 242 (594)
Q Consensus 214 ~~Ei~~L~~kI~sLE~En~RLq~qv~e~~ 242 (594)
...+..|..++..|+.+|..|..+|..+.
T Consensus 21 k~~~~~Le~~~~~L~~~n~~L~~~i~~L~ 49 (61)
T 1t2k_D 21 KVWVQSLEKKAEDLSSLNGQLQSEVTLLR 49 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577777777777777777777665443
No 109
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=40.43 E-value=90 Score=28.85 Aligned_cols=30 Identities=10% Similarity=0.097 Sum_probs=19.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 045262 165 CEQEVKNLKNMVQMLQDREKNLEVELLEYY 194 (594)
Q Consensus 165 ~e~EI~~LR~lVeeLqERE~~LE~ELLEyy 194 (594)
++.+|..+|..+...+.|...++..=-+|.
T Consensus 6 LEd~L~~~r~~l~~~~~~~~~le~l~~~l~ 35 (135)
T 2e7s_A 6 LEEQLNKSLKTIASQKAAIENYNQLKEDYN 35 (135)
T ss_dssp CCSTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677788888887777776665333333
No 110
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=40.03 E-value=38 Score=26.49 Aligned_cols=30 Identities=20% Similarity=0.382 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhHhHHhhh
Q 045262 304 LKVLEAEAEDLRKSNMKLQLENSQLARRLE 333 (594)
Q Consensus 304 lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~ 333 (594)
+..|-.|..+||..+..|+.+..+|..||.
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455667777777777777777777766664
No 111
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=39.94 E-value=1.7e+02 Score=24.81 Aligned_cols=33 Identities=12% Similarity=0.365 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 045262 250 AAKTKIKLLKKKLRTEAEQNREQILAVQERVTK 282 (594)
Q Consensus 250 ~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~ 282 (594)
..+.++..|-..+...+++.|..|-.|++.+..
T Consensus 47 ~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~ 79 (127)
T 1ez3_A 47 KTKEELEELMSDIKKTANKVRSKLKSIEQSIEQ 79 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666777777777777776666554
No 112
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=39.89 E-value=2.7e+02 Score=27.01 Aligned_cols=79 Identities=22% Similarity=0.188 Sum_probs=36.9
Q ss_pred HHHHhhhchhhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH-----HHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 045262 189 ELLEYYGLKEQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEA-----QVADHAKTVSELEAAKTKIKLLKKKLR 263 (594)
Q Consensus 189 ELLEyy~LKEQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~-----qv~e~~~v~~ELE~ar~kir~LqkKl~ 263 (594)
+|++||+.. +..++.++..-+.+.+.|...+..|.++.+++-. +..=|.+-+.=|-.=|.|||.||.+|-
T Consensus 125 elfd~~~~~-----~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~lq~~Ll 199 (213)
T 1ik9_A 125 ELIAYALDT-----IAENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSLHNKLL 199 (213)
T ss_dssp HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 455666642 2333333333344444444444444444333221 111122333334555677777777776
Q ss_pred HHHHHhHHH
Q 045262 264 TEAEQNREQ 272 (594)
Q Consensus 264 ~~a~q~K~q 272 (594)
..+.+...+
T Consensus 200 ~~~~~~~~~ 208 (213)
T 1ik9_A 200 NAAQEREKD 208 (213)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHhhhh
Confidence 666555443
No 113
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=39.77 E-value=37 Score=26.52 Aligned_cols=28 Identities=14% Similarity=0.165 Sum_probs=22.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 215 MEGRLLNLKIESLQADNRRLEAQVADHA 242 (594)
Q Consensus 215 ~Ei~~L~~kI~sLE~En~RLq~qv~e~~ 242 (594)
.-++.|..++..|+.||..|..++..+.
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~ 49 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALK 49 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777788889999999988877654
No 114
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=39.64 E-value=69 Score=25.46 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=15.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH
Q 045262 214 NMEGRLLNLKIESLQADNRRLEAQVA 239 (594)
Q Consensus 214 ~~Ei~~L~~kI~sLE~En~RLq~qv~ 239 (594)
..++..|..++..|+.+|..|..++.
T Consensus 22 k~~~~~le~~~~~L~~~N~~L~~~i~ 47 (63)
T 1ci6_A 22 RAEQEALTGECKELEKKNEALKERAD 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666665553
No 115
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=39.56 E-value=2.2e+02 Score=25.93 Aligned_cols=36 Identities=11% Similarity=0.233 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 045262 248 LEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKL 283 (594)
Q Consensus 248 LE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~L 283 (594)
....+.++..|-..+...+++.+..|..|++.+...
T Consensus 76 ~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~ 111 (180)
T 1s94_A 76 DDQMKEELEELMTDIKRTANKVRGKLKTIELNIEQE 111 (180)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344566666777777777777777777777655443
No 116
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=39.52 E-value=53 Score=27.50 Aligned_cols=29 Identities=24% Similarity=0.203 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Q 045262 202 IVMELQNRLKLNNMEGRLLNLKIESLQAD 230 (594)
Q Consensus 202 ~v~ELe~~L~~k~~Ei~~L~~kI~sLE~E 230 (594)
.|++|+..|..+..||......|..|+.+
T Consensus 20 ti~eLq~~L~~K~eELr~kd~~I~eLEk~ 48 (72)
T 3nmd_A 20 SLRDLQYALQEKIEELRQRDALIDELELE 48 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777766666555555555544444
No 117
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=39.25 E-value=1.4e+02 Score=24.93 Aligned_cols=26 Identities=8% Similarity=0.065 Sum_probs=15.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 215 MEGRLLNLKIESLQADNRRLEAQVAD 240 (594)
Q Consensus 215 ~Ei~~L~~kI~sLE~En~RLq~qv~e 240 (594)
.++..+...|..|+++..++++++..
T Consensus 28 ~~l~~~q~~i~~lE~el~~~r~e~~~ 53 (86)
T 1x8y_A 28 RERDTSRRLLAEKEREMAEMRARMQQ 53 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666677777666666654443
No 118
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=38.74 E-value=1.8e+02 Score=24.91 Aligned_cols=30 Identities=30% Similarity=0.383 Sum_probs=18.0
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 045262 234 LEAQVADHAKTVSELEAAKTKIKLLKKKLR 263 (594)
Q Consensus 234 Lq~qv~e~~~v~~ELE~ar~kir~LqkKl~ 263 (594)
|++++..-..+.+||...|+-+-.+++|++
T Consensus 19 LeaEIqAKQ~i~EELs~vr~~ni~~eskL~ 48 (81)
T 1wt6_A 19 LEEEVLTRQSLSREMEAIRTDNQNFASQLR 48 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555556666666666666666665554
No 119
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=38.61 E-value=74 Score=30.95 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=14.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Q 045262 216 EGRLLNLKIESLQADNRRLEAQVA 239 (594)
Q Consensus 216 Ei~~L~~kI~sLE~En~RLq~qv~ 239 (594)
+++.-..-|..|+.||..|..++.
T Consensus 14 ql~~ad~LV~~L~~En~~L~~ql~ 37 (190)
T 4emc_A 14 QIDSADLLVANLVNENFVLSEKLD 37 (190)
T ss_dssp ------CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455667888888888887766
No 120
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=38.57 E-value=63 Score=27.65 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=19.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 215 MEGRLLNLKIESLQADNRRLEAQVAD 240 (594)
Q Consensus 215 ~Ei~~L~~kI~sLE~En~RLq~qv~e 240 (594)
.....+..++..|+.||..|+.+|.+
T Consensus 36 ~r~~e~~~r~~~Le~EN~~Lr~~v~~ 61 (87)
T 1hjb_A 36 MRNLETQHKVLELTAENERLQKKVEQ 61 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677888888888888888774
No 121
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=38.41 E-value=2.5e+02 Score=26.09 Aligned_cols=82 Identities=17% Similarity=0.255 Sum_probs=45.8
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHH
Q 045262 234 LEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAED 313 (594)
Q Consensus 234 Lq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~E 313 (594)
+.++..+|..+.++++.+-.++..|-.+|.....-+.+ ...+-++-..|+. .++++....+-+++.-|=....=
T Consensus 54 F~~dy~EYk~Lhaev~~v~~~F~~Ld~~L~~l~~~s~e-~~~i~~EY~r~k~-----~K~dp~y~ekK~Rc~yL~~KLsH 127 (140)
T 1xaw_A 54 FDTGLQEYKSLQSVLDEINKELSRLDKELDDYREESEE-YMAAADEYNRLKQ-----VKGSADYKSKKNHCKQLKSKLSH 127 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHH-HHHHHHHHHHHHH-----HHTSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHH-HHHHHHHHHHHHH-----hcCCcHHHHHHHHHHHHHHHHHH
Confidence 45666666667777766666777776666654333322 1112222222221 25666666666677777666666
Q ss_pred HHHHhHHH
Q 045262 314 LRKSNMKL 321 (594)
Q Consensus 314 LRr~NkeL 321 (594)
+++...+.
T Consensus 128 IK~lI~~Y 135 (140)
T 1xaw_A 128 IKKMVGDY 135 (140)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 66665544
No 122
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=38.33 E-value=40 Score=26.49 Aligned_cols=29 Identities=21% Similarity=0.133 Sum_probs=20.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 214 NMEGRLLNLKIESLQADNRRLEAQVADHA 242 (594)
Q Consensus 214 ~~Ei~~L~~kI~sLE~En~RLq~qv~e~~ 242 (594)
...+..|..++..|+.+|..|..++..+.
T Consensus 21 k~~~~~Le~~v~~L~~~n~~L~~~v~~L~ 49 (62)
T 1jnm_A 21 LERIARLEEKVKTLKAQNSELASTANMLR 49 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777777777777777777665443
No 123
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=37.70 E-value=2.1e+02 Score=25.19 Aligned_cols=70 Identities=24% Similarity=0.303 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 045262 252 KTKIKLLKKKLRTEA---EQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQLE 324 (594)
Q Consensus 252 r~kir~LqkKl~~~a---~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~E 324 (594)
|+-...|++++..-. .++.+|...-.+-|..|.+-=.+. -+--++...++++|+.||..|.....++.-+
T Consensus 17 rNvT~lLq~qLT~Aq~~l~~~eaQAaTCNqTV~tL~~SL~ke---kaq~q~qq~~v~elqgEI~~Lnq~Lqda~~~ 89 (99)
T 3ni0_A 17 RNTTHLLQRQLTRTQDSLLQAETQANSCNLTVVTLQESLEKK---VSQALEQQARIKELENEVTKLNQELENLRIQ 89 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566776665443 566777777777777766431000 0112333456889999988887766555533
No 124
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=37.41 E-value=39 Score=27.04 Aligned_cols=29 Identities=31% Similarity=0.275 Sum_probs=20.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 214 NMEGRLLNLKIESLQADNRRLEAQVADHA 242 (594)
Q Consensus 214 ~~Ei~~L~~kI~sLE~En~RLq~qv~e~~ 242 (594)
...+..|..++..|+.+|..|..++..+.
T Consensus 29 ~~~~~~Le~~v~~L~~eN~~L~~ev~~Lr 57 (63)
T 2dgc_A 29 LQRMKQLEDKVEELLSKNYHLENEVARLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666777777788888888777665544
No 125
>1eq1_A Apolp-III, apolipophorin-III; five helix-bundle, "helix-short helix-helix" recognition motif, lipid binding protein; NMR {Manduca sexta} SCOP: a.63.1.1
Probab=36.73 E-value=56 Score=30.65 Aligned_cols=74 Identities=18% Similarity=0.283 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhhh--cchhhhHHHHH-----HHHHHHHHHhhHHHHHHHHHHhh
Q 045262 302 QRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQMLEI--SVLEDGEREAL-----NEMSQRLREENTSLSKEVEKLHA 374 (594)
Q Consensus 302 q~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~~--~~~E~~ev~~i-----~ee~~~LR~~NedL~kQVEqLq~ 374 (594)
+.-.+||--++|||+.--+.+.+-..|-.||.+|=.... +.--..+|+.- ..-+-.++.+|+|..|+.|+.|+
T Consensus 78 q~R~nlektAeeLRkaHPdVE~qA~~lrdkLqaAVQ~t~qesqkLaKeVasn~eetN~KLaPkiK~Ay~dF~K~aeevqK 157 (166)
T 1eq1_A 78 QARQNVEKTAEELRKAHPDVEKEANAFKDKLQAAVQTTVQESQKLAKEVASNMEETNKKLAPKIKQAYDDFVKHAEEVQK 157 (166)
T ss_dssp HHHHHHHHHHHGGGGCSHHHHHTCSSSHHHHHHHHHHHHHHHHHHHHHHHSCCCSSCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 445779999999999999999999999999998843210 00000111000 01123467889999999999886
Q ss_pred h
Q 045262 375 D 375 (594)
Q Consensus 375 d 375 (594)
-
T Consensus 158 K 158 (166)
T 1eq1_A 158 K 158 (166)
T ss_dssp H
T ss_pred H
Confidence 3
No 126
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=36.48 E-value=1.6e+02 Score=25.84 Aligned_cols=39 Identities=15% Similarity=-0.037 Sum_probs=25.6
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHH---HHHHHHHHHHH
Q 045262 203 VMELQNRLKLNNMEGRLLNLKIESLQAD---NRRLEAQVADH 241 (594)
Q Consensus 203 v~ELe~~L~~k~~Ei~~L~~kI~sLE~E---n~RLq~qv~e~ 241 (594)
+..-|.-|..+...|+.|..+|..++.. ..-|++|+.-|
T Consensus 11 L~~aEeaL~~kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY 52 (94)
T 3jsv_C 11 LQQAEEALVAKQELIDKLKEEAEQHKIVMETVPVLKAQADIY 52 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566777888888888888877744 44455665544
No 127
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=36.13 E-value=1.4e+02 Score=27.51 Aligned_cols=18 Identities=22% Similarity=0.481 Sum_probs=6.8
Q ss_pred HHHHHhhHhHHhhhhhhh
Q 045262 320 KLQLENSQLARRLESTQM 337 (594)
Q Consensus 320 eLQ~EKreL~~KL~sAe~ 337 (594)
.++..+..|-.+|..++.
T Consensus 100 ~~e~r~~~L~~ql~e~e~ 117 (135)
T 2e7s_A 100 AIEILNKRLTEQLREKDM 117 (135)
T ss_dssp HHHHHHHHHHHTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 128
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=36.02 E-value=1.6e+02 Score=23.31 Aligned_cols=19 Identities=37% Similarity=0.501 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHhHHHH
Q 045262 304 LKVLEAEAEDLRKSNMKLQ 322 (594)
Q Consensus 304 lkeLE~Ev~ELRr~NkeLQ 322 (594)
+.+||.|.-.|+...+.||
T Consensus 33 lskLE~ets~mKevlk~lq 51 (54)
T 1deb_A 33 LTKLETEASNMKEVLKQLQ 51 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhHHHHHHHHc
Confidence 3445555555555555554
No 129
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=35.36 E-value=1.2e+02 Score=31.84 Aligned_cols=15 Identities=7% Similarity=-0.206 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHhh
Q 045262 385 YLKWINACLRYELRN 399 (594)
Q Consensus 385 YLRWVNACLR~ELrn 399 (594)
-.+.|-...+.++..
T Consensus 168 l~~aL~~~~~~~~~~ 182 (421)
T 1ses_A 168 YELALLRFAMDFMAR 182 (421)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344445555555544
No 130
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=34.99 E-value=32 Score=25.03 Aligned_cols=25 Identities=36% Similarity=0.465 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhHh
Q 045262 304 LKVLEAEAEDLRKSNMKLQLENSQL 328 (594)
Q Consensus 304 lkeLE~Ev~ELRr~NkeLQ~EKreL 328 (594)
+..||..|+||-..|.+|+.|-.-|
T Consensus 2 M~QLE~kVEeLl~~n~~Le~EV~RL 26 (33)
T 3m48_A 2 MAQLEAKVEELLSKNWNLENEVARL 26 (33)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4568999999999999998885544
No 131
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=34.81 E-value=55 Score=32.36 Aligned_cols=26 Identities=23% Similarity=0.380 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Q 045262 231 NRRLEAQVADHAKTVSELEAAKTKIK 256 (594)
Q Consensus 231 n~RLq~qv~e~~~v~~ELE~ar~kir 256 (594)
.+|++...........+++.++..+.
T Consensus 100 ~~r~~~L~~~~~~s~~~~~~a~~~~~ 125 (369)
T 4dk0_A 100 YQRLSKLYGQKATSLDTLNTAKATLN 125 (369)
T ss_dssp HHHHHHGGGSSCSCGGGHHHHHHHHH
T ss_pred HHHHHHHHHcCCcCHHHHHHHHHHHH
Confidence 33444333333333444444444333
No 132
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=34.06 E-value=39 Score=24.71 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhHh
Q 045262 303 RLKVLEAEAEDLRKSNMKLQLENSQL 328 (594)
Q Consensus 303 ~lkeLE~Ev~ELRr~NkeLQ~EKreL 328 (594)
++..||..|+||=..|.+|+.|..-|
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rL 27 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRL 27 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 46678999999999999888886655
No 133
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=33.75 E-value=2.4e+02 Score=24.69 Aligned_cols=37 Identities=14% Similarity=0.215 Sum_probs=19.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 045262 215 MEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAA 251 (594)
Q Consensus 215 ~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~a 251 (594)
.++..|.......+.+..+|.+.+.+-...+.+.|..
T Consensus 12 e~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~ 48 (97)
T 2eqb_B 12 EDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEE 48 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555666665555555555544433
No 134
>4f61_I Stathmin-like domain R4; alpha-tubulin, beta-tubulin, GTPase, microtubule, RB3, stath tubulin, cell cycle; HET: GTP GDP; 4.17A {Artificial gene}
Probab=33.66 E-value=3.8e+02 Score=26.89 Aligned_cols=44 Identities=25% Similarity=0.401 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH-----hHHHHHHhhHhHHhhhhhhhhh
Q 045262 296 DTQSRLQRLKVLEAEAEDLRKS-----NMKLQLENSQLARRLESTQMLE 339 (594)
Q Consensus 296 E~ekKlq~lkeLE~Ev~ELRr~-----NkeLQ~EKreL~~KL~sAe~~~ 339 (594)
-+.....++++-+--+++.|+. +.-.+.=..++-.||++|+..-
T Consensus 112 ~laal~erLkek~~~aeeVRr~~~~~~~~~~k~~~eei~~KLeaAeErR 160 (240)
T 4f61_I 112 HFAAMLERLQEKDKHAEEVRQRAIEENNNWIKMAKEKLAQKMESNKENR 160 (240)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 3444455666777777777774 3344455667888999997643
No 135
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=33.59 E-value=1.6e+02 Score=23.07 Aligned_cols=40 Identities=10% Similarity=0.160 Sum_probs=26.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 045262 214 NMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIK 256 (594)
Q Consensus 214 ~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir 256 (594)
+.+|..|.-+|..|.++..-|+..+. .+..|-++|..+|.
T Consensus 10 ss~V~~L~~kVdqLssdV~al~~~v~---~ak~eA~RAN~RlD 49 (52)
T 1jcd_A 10 SSDAQTANAKADQASNDANAARSDAQ---AAKDDAARANQRAD 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhhh
Confidence 45667777777777777777776544 66666666666553
No 136
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=33.35 E-value=53 Score=24.00 Aligned_cols=27 Identities=26% Similarity=0.363 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhHh
Q 045262 302 QRLKVLEAEAEDLRKSNMKLQLENSQL 328 (594)
Q Consensus 302 q~lkeLE~Ev~ELRr~NkeLQ~EKreL 328 (594)
++++.||..|+||=..|..|+.|-.-|
T Consensus 1 ~RMnQLEdkVEeLl~~~~~Le~eV~RL 27 (34)
T 2hy6_A 1 MKVKQLADAVEELASANYHLANAVARL 27 (34)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHhhHHHHHHHHHH
Confidence 356789999999988888888875554
No 137
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=32.79 E-value=2.8e+02 Score=25.00 Aligned_cols=65 Identities=17% Similarity=0.190 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 045262 198 EQETIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKL 262 (594)
Q Consensus 198 EQEa~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl 262 (594)
|-...-.||++-|..-.-.++.|...|...+..-.+..=...+...=+.=+...|.+|+.++..|
T Consensus 64 E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l~~~Ei~~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 64 ELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKFKLPAGDLQERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455677888888888888888888888876666653111222222222344555555555443
No 138
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=32.76 E-value=52 Score=33.46 Aligned_cols=23 Identities=43% Similarity=0.618 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Q 045262 222 LKIESLQADNRRLEAQVADHAKT 244 (594)
Q Consensus 222 ~kI~sLE~En~RLq~qv~e~~~v 244 (594)
.+|++|++++++|++++.+..+.
T Consensus 185 ~eie~L~~~~~~L~eEi~~Le~~ 207 (315)
T 2ve7_A 185 FKLESLEAKNRALNEQIARLEQE 207 (315)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777776666433
No 139
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=32.57 E-value=1.3e+02 Score=31.99 Aligned_cols=39 Identities=8% Similarity=-0.115 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHhh--------hhcchh--hHHHHHHHHHHHHHHHHhhc
Q 045262 362 NTSLSKEVEKLHA--------DKCAGV--EELVYLKWINACLRYELRNY 400 (594)
Q Consensus 362 NedL~kQVEqLq~--------dRfseV--EELVYLRWVNACLR~ELrn~ 400 (594)
+-+|.+++.-+.- .+|-.. ......+.|-..++..+..+
T Consensus 162 H~~lg~~l~l~d~~~~~k~~g~G~~~~~p~ga~l~~aL~~~~~~~~~~~ 210 (455)
T 2dq0_A 162 HVDLLEILGGADFARAAKVSGSRFYYLLNEIVILDLALIRFALDRLIEK 210 (455)
T ss_dssp HHHHHHHTTCEESHHHHHHTCTTCCEEEHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCcEEecccccccCCCeEEECCHHHHHHHHHHHHHHHHHHHc
Confidence 4567766544432 233332 33334455555666666544
No 140
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=32.49 E-value=1e+02 Score=30.21 Aligned_cols=36 Identities=14% Similarity=0.219 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 045262 224 IESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLK 259 (594)
Q Consensus 224 I~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~Lq 259 (594)
+...+.+-+|.+...........+++.++..+...+
T Consensus 92 ~~~a~~~~~r~~~L~~~~~~s~~~~~~a~~~~~~~~ 127 (341)
T 3fpp_A 92 LKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQ 127 (341)
T ss_dssp HHHHTHHHHHHHHHHHTSSSTTHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHH
Confidence 344445556666666666666667776665554443
No 141
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=32.11 E-value=2.3e+02 Score=23.79 Aligned_cols=33 Identities=18% Similarity=0.251 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhh
Q 045262 304 LKVLEAEAEDLRKSNMKLQLENSQLARRLESTQ 336 (594)
Q Consensus 304 lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe 336 (594)
+...+....+|...+..|..+|.+|...|..|+
T Consensus 30 l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaE 62 (89)
T 3bas_A 30 LAKTERIKKELEEQNVTLLEQKNDLFGSMKQLE 62 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 444566666777778888888888877644443
No 142
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=32.07 E-value=3e+02 Score=29.93 Aligned_cols=11 Identities=0% Similarity=0.353 Sum_probs=5.6
Q ss_pred hHHHHHHHHHH
Q 045262 362 NTSLSKEVEKL 372 (594)
Q Consensus 362 NedL~kQVEqL 372 (594)
+-+|.+++.-+
T Consensus 188 H~~Lg~~lgl~ 198 (501)
T 1wle_A 188 HLEIAEKLDII 198 (501)
T ss_dssp HHHHHHHHTCE
T ss_pred HHHHHhhcCce
Confidence 44565555444
No 143
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=32.02 E-value=23 Score=34.98 Aligned_cols=35 Identities=26% Similarity=0.311 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 045262 225 ESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLK 259 (594)
Q Consensus 225 ~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~Lq 259 (594)
..|.+||++|+++++++.....+++..+.++..|+
T Consensus 22 ~~l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rLr 56 (255)
T 2j5u_A 22 KNTYTENQHLKERLEELAQLESEVADLKKENKDLK 56 (255)
T ss_dssp ----CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677776666666655555554444444443
No 144
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=31.72 E-value=2.2e+02 Score=30.86 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 216 EGRLLNLKIESLQADNRRLEAQVADH 241 (594)
Q Consensus 216 Ei~~L~~kI~sLE~En~RLq~qv~e~ 241 (594)
+-..+..++..|+++.+.+..++...
T Consensus 78 ~~r~~~~~~~~l~~~rn~~sk~i~~~ 103 (501)
T 1wle_A 78 ELRQLREQIRSLEEEKEAVTEAVRAL 103 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666666666666543
No 145
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=31.67 E-value=51 Score=33.25 Aligned_cols=20 Identities=25% Similarity=0.180 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHhHHHHH
Q 045262 304 LKVLEAEAEDLRKSNMKLQL 323 (594)
Q Consensus 304 lkeLE~Ev~ELRr~NkeLQ~ 323 (594)
++.+..|+..||..+++|+.
T Consensus 77 Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 77 LKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhcC
Confidence 66677777777777777776
No 146
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=31.64 E-value=1.4e+02 Score=29.44 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHhHHHHHH
Q 045262 304 LKVLEAEAEDLRKSNMKLQLE 324 (594)
Q Consensus 304 lkeLE~Ev~ELRr~NkeLQ~E 324 (594)
+...+.++..++.....++.+
T Consensus 124 ~~~a~a~~~~~~~~l~~~~~~ 144 (369)
T 4dk0_A 124 LNNAKAEMDVVQENIKQAEIE 144 (369)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444333333333
No 147
>3ryc_E Stathmin-4; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Rattus norvegicus} SCOP: a.137.10.1 PDB: 3ryf_E* 3ryh_E* 3ryi_E* 3ut5_E* 4eb6_E* 1sa0_E* 1sa1_E* 1z2b_E* 3du7_E* 3e22_E* 3hkb_E* 3hkc_E* 3hkd_E* 3hke_E* 3n2g_E* 3n2k_E*
Probab=31.56 E-value=3.2e+02 Score=25.43 Aligned_cols=98 Identities=19% Similarity=0.252 Sum_probs=45.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCC
Q 045262 215 MEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAID 294 (594)
Q Consensus 215 ~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d 294 (594)
.-++.+..++..-++-.+.+++++-...+...|.+ -..||+.+....+..+.-=..|.+++...+.. +.
T Consensus 43 ~SleEIqkKLeAAEERRks~Ea~~lk~laekrehe-----~EvlqKa~Een~~F~k~aeEkL~~KME~~kEn------Re 111 (143)
T 3ryc_E 43 PSLEEIQKKLEAAEERRKYQEAELLKHLAEKREHE-----REVIQKAIEENNNFIKMAKEKLAQKMESNKEN------RE 111 (143)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HH
T ss_pred CCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------HH
Confidence 34444555555555555555555544433332222 12344444433333322222333333333222 12
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 045262 295 PDTQSRLQRLKVLEAEAEDLRKSNMKLQLE 324 (594)
Q Consensus 295 ~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~E 324 (594)
+-+...+.++++-+.-+.|.|| |++++.+
T Consensus 112 A~laal~erLkek~kha~eVrr-~Ke~~~~ 140 (143)
T 3ryc_E 112 AHLAAMLERLQEKDKHAEEVRK-NKELKEE 140 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-HHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhhhh
Confidence 3344555667777777777754 5555543
No 148
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=31.43 E-value=85 Score=26.84 Aligned_cols=25 Identities=24% Similarity=0.167 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhHh
Q 045262 304 LKVLEAEAEDLRKSNMKLQLENSQL 328 (594)
Q Consensus 304 lkeLE~Ev~ELRr~NkeLQ~EKreL 328 (594)
..+++.+|.+|.+.|..|..+...|
T Consensus 38 ~~e~~~r~~~Le~EN~~Lr~~v~~L 62 (87)
T 1hjb_A 38 NLETQHKVLELTAENERLQKKVEQL 62 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555544444443
No 149
>1pfi_A Major coat protein of PF1 virus; complex(viral coat protein/DNA), helical virus; HET: DC; 3.00A {Pseudomonas phage PF1} SCOP: h.1.4.1 PDB: 1ifn_A 1ifm_A* 1pjf_A 1ql1_A 1ql2_A 1zn5_A 2ifm_A 2ifn_A 2klv_A 2ksj_A 2xkm_A 3ifm_A 4ifm_A
Probab=31.40 E-value=32 Score=26.39 Aligned_cols=19 Identities=32% Similarity=0.607 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHhhc
Q 045262 16 FGVAFVFSLAGIFVVRLRK 34 (594)
Q Consensus 16 ~G~ava~S~A~~~~~r~~~ 34 (594)
+|+.|-+.|||++|+-+|.
T Consensus 27 VGaLvil~VAGLiysm~RK 45 (46)
T 1pfi_A 27 VGALVILAVAGLIYSMLRK 45 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 6888999999999998764
No 150
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=31.09 E-value=1.1e+02 Score=32.12 Aligned_cols=7 Identities=57% Similarity=0.695 Sum_probs=3.9
Q ss_pred CCCCCcc
Q 045262 401 QPPAGKT 407 (594)
Q Consensus 401 q~p~gk~ 407 (594)
|+-+||+
T Consensus 149 qTGSGKT 155 (403)
T 4etp_A 149 QTGSGKT 155 (403)
T ss_dssp CTTSSHH
T ss_pred CCCCCCc
Confidence 4555665
No 151
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=31.06 E-value=2.4e+02 Score=23.81 Aligned_cols=53 Identities=21% Similarity=0.224 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 045262 216 EGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNRE 271 (594)
Q Consensus 216 Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~ 271 (594)
+-+.+..++..++.+|..|+.+|.. +..+|+.++.+=.-++..++...++--.
T Consensus 7 e~e~~~~klq~~E~rN~~Le~~v~~---le~~Le~s~~~q~~~~~Elk~l~e~Ld~ 59 (79)
T 3cvf_A 7 EREETQQKVQDLETRNAELEHQLRA---MERSLEEARAERERARAEVGRAAQLLDV 59 (79)
T ss_dssp ---CTTHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455666777888888888877654 3455666665555555555555444433
No 152
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=30.71 E-value=2.8e+02 Score=24.50 Aligned_cols=32 Identities=13% Similarity=0.058 Sum_probs=15.1
Q ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 210 LKLNNMEGRLLNLKIESLQADNRRLEAQVADH 241 (594)
Q Consensus 210 L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~ 241 (594)
|.....||..++..|.+|+.|...|..+-+.+
T Consensus 33 l~~~k~Ei~elrr~iq~L~~el~~l~~~~~sL 64 (131)
T 3tnu_A 33 VQSGKSEISELRRTMQNLEIELQSQLSMKASL 64 (131)
T ss_dssp --------CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 33445667777777777777766555544433
No 153
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=29.69 E-value=2.2e+02 Score=24.39 Aligned_cols=16 Identities=38% Similarity=0.559 Sum_probs=9.6
Q ss_pred hhhHHHHHHHHHHHHH
Q 045262 215 MEGRLLNLKIESLQAD 230 (594)
Q Consensus 215 ~Ei~~L~~kI~sLE~E 230 (594)
-||..|+.+|+.|+.|
T Consensus 26 qEi~~Lr~kv~elEnE 41 (81)
T 3qh9_A 26 QELRHLKIKVEELENE 41 (81)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3566666666666544
No 154
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=29.41 E-value=4e+02 Score=27.34 Aligned_cols=123 Identities=11% Similarity=0.097 Sum_probs=81.9
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhH-----HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 045262 162 KDDCEQEVKNLKNMVQMLQDREKNLEVELLEYYGLKEQE-----TIVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEA 236 (594)
Q Consensus 162 ~~d~e~EI~~LR~lVeeLqERE~~LE~ELLEyy~LKEQE-----a~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~ 236 (594)
.+....-|..|+..+...+..-..+-..|-.|..-=++. ..+-.|...|.-+...|..|..+|..++.+.....+
T Consensus 118 ~~~l~~~L~~L~~~i~~~q~~~~~~~~~L~~F~~~l~~d~~~f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~I~~~~~ 197 (346)
T 2nrj_A 118 GETLKEGITDLRGEIQQNQKYAQQLIEELTKLRDSIGHDVRAFGSNKELLQSILKNQGADVDADQKRLEEVLGSVNYYKQ 197 (346)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGGGCGGGC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHhHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHH
Confidence 344566789999999999999999999998887642211 236778888889999999999999999998874443
Q ss_pred HHHHHH-------------------hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 045262 237 QVADHA-------------------KTVSELEAAKTKIKLLKKKLRTEAEQNREQILAVQERVTKLQE 285 (594)
Q Consensus 237 qv~e~~-------------------~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~ 285 (594)
-+.... .++.++..+..++..|+.++..... .-..+..++..+..|-.
T Consensus 198 ~i~~~~~~~~g~~i~~~i~Ggi~a~~a~k~~~~~~~ei~~l~~~i~~~~~-l~~~l~~~~~~~~~l~~ 264 (346)
T 2nrj_A 198 LESDGFNVMKGAILGLPIIGGIIVGVARDNLGKLEPLLAELRQTVDYKVT-LNRVVGVAYSNINEMHK 264 (346)
T ss_dssp CC--CCGGGTSCEEEEEETTTEEEEEEGGGHHHHHHHHHHHHSCCCHHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHhccccccccceehhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 322111 1235666677777777766643222 22445555555555543
No 155
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=29.26 E-value=3.6e+02 Score=25.27 Aligned_cols=34 Identities=12% Similarity=0.027 Sum_probs=21.6
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q 045262 203 VMELQNRLKLNNMEGRLLNLKIESLQADNRRLEA 236 (594)
Q Consensus 203 v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~ 236 (594)
...|+-.|..-..++.....+|..|+..+.++..
T Consensus 15 qs~LeD~L~~~R~el~~~~~ri~~lE~~r~~~~~ 48 (154)
T 2ocy_A 15 QSHLEEQLNKSLKTIASQKAAIENYNQLKEDYNT 48 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666677677777777666555444
No 156
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=29.07 E-value=1.3e+02 Score=25.78 Aligned_cols=45 Identities=20% Similarity=0.320 Sum_probs=0.0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 045262 266 AEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKLQL 323 (594)
Q Consensus 266 a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeLQ~ 323 (594)
..+.++||..|++++ ..+|....+.|+.||.++.-.+...+.|..
T Consensus 35 rqkekEqL~~LKkkl-------------~~el~~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 35 RARAKEQLAALKKHK-------------ENEISHHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 157
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=28.88 E-value=2.9e+02 Score=24.12 Aligned_cols=16 Identities=6% Similarity=0.204 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHH
Q 045262 271 EQILAVQERVTKLQEQ 286 (594)
Q Consensus 271 ~qi~~Lkq~v~~Lq~~ 286 (594)
+++-.|++||......
T Consensus 40 E~i~vLk~Qv~IY~~D 55 (94)
T 3jsv_C 40 ETVPVLKAQADIYKAD 55 (94)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6778888888877654
No 158
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=28.82 E-value=61 Score=32.69 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHhHHHHHHhhH
Q 045262 307 LEAEAEDLRKSNMKLQLENSQ 327 (594)
Q Consensus 307 LE~Ev~ELRr~NkeLQ~EKre 327 (594)
|..+..++|+.+..|+.|...
T Consensus 73 L~~~Lk~ar~El~~LkeEler 93 (251)
T 3m9b_A 73 LMETLKEARQQLLALREEVDR 93 (251)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444444445444444444333
No 159
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=28.63 E-value=1.3e+02 Score=23.43 Aligned_cols=32 Identities=19% Similarity=0.177 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhHHHHHHhhHhHHhhhhhhhhh
Q 045262 308 EAEAEDLRKSNMKLQLENSQLARRLESTQMLE 339 (594)
Q Consensus 308 E~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~~~ 339 (594)
|....+|++.+..|...|..|+.=|..|...+
T Consensus 8 ~~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el 39 (51)
T 3m91_A 8 ARDIHQLEARIDSLAARNSKLMETLKEARQQL 39 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566788888888888888877766666554
No 160
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=28.40 E-value=1.1e+02 Score=25.69 Aligned_cols=27 Identities=26% Similarity=0.201 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHhhHh
Q 045262 302 QRLKVLEAEAEDLRKSNMKLQLENSQL 328 (594)
Q Consensus 302 q~lkeLE~Ev~ELRr~NkeLQ~EKreL 328 (594)
++..+++..|.+|.+.|..|+.+...|
T Consensus 36 ~r~~e~~~r~~~L~~eN~~L~~~v~~L 62 (78)
T 1gu4_A 36 MRNLETQHKVLELTAENERLQKKVEQL 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666666665555554444
No 161
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=28.21 E-value=1e+02 Score=32.90 Aligned_cols=23 Identities=13% Similarity=0.313 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 045262 218 RLLNLKIESLQADNRRLEAQVAD 240 (594)
Q Consensus 218 ~~L~~kI~sLE~En~RLq~qv~e 240 (594)
..+..++..|+++.+.+..++..
T Consensus 41 r~~~~~~~~l~~~~n~~sk~i~~ 63 (455)
T 2dq0_A 41 RTKLKEINRLRHERNKIAVEIGK 63 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555555555554
No 162
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=28.10 E-value=1.1e+02 Score=24.51 Aligned_cols=31 Identities=19% Similarity=0.487 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 045262 219 LLNLKIESLQADNRRLEAQVADHAKTVSELE 249 (594)
Q Consensus 219 ~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE 249 (594)
-|+..+..|+.||++|..-+.+-.++++.||
T Consensus 14 aLkDqV~eL~qe~k~m~k~lEeEqkARk~LE 44 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKKSLEEEQRARKDLE 44 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777788887777777777777766
No 163
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=28.09 E-value=1.6e+02 Score=29.04 Aligned_cols=44 Identities=20% Similarity=0.242 Sum_probs=24.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 045262 216 EGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLK 259 (594)
Q Consensus 216 Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~Lq 259 (594)
|-+.|...|..|+.|+.+|+.+..++..++++....-.-|..|-
T Consensus 116 EN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~~q~la~vi~~l~ 159 (209)
T 2wvr_A 116 ENEKLHKEIEQKDNEIARLKKENKELAEVAEHVQYMAELIERLN 159 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33445555566666666666666555555555555444444443
No 164
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=27.96 E-value=3.6e+02 Score=24.89 Aligned_cols=54 Identities=17% Similarity=0.145 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 045262 221 NLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNREQIL 274 (594)
Q Consensus 221 ~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~qi~ 274 (594)
+.....|++=|.||.+++.+-..+..-|+.+..-.+..-.+.+..++..|....
T Consensus 78 eeA~~~L~eYn~rL~~E~~dR~~L~~~L~~~~~~~~~~l~e~e~~leeyK~Kl~ 131 (152)
T 4fla_A 78 DEACLLLAEYNGRLAAELEDRRQLARMLVEYTQNQKDVLSEKEKKLEEYKQKLA 131 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344466777788888888888777777776666666555555555555555443
No 165
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=27.69 E-value=3.2e+02 Score=24.08 Aligned_cols=29 Identities=24% Similarity=0.224 Sum_probs=15.4
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 212 LNNMEGRLLNLKIESLQADNRRLEAQVAD 240 (594)
Q Consensus 212 ~k~~Ei~~L~~kI~sLE~En~RLq~qv~e 240 (594)
....||..++..|.+|+.|...|+.+-+.
T Consensus 33 ~~k~Ei~elrr~iq~L~~el~~l~~~~~~ 61 (129)
T 3tnu_B 33 NTKHEISEMNRMIQRLRAEIDNVKKQCAN 61 (129)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 34455666666666666665555444333
No 166
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=27.36 E-value=1.2e+02 Score=33.08 Aligned_cols=21 Identities=5% Similarity=0.278 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 045262 220 LNLKIESLQADNRRLEAQVAD 240 (594)
Q Consensus 220 L~~kI~sLE~En~RLq~qv~e 240 (594)
+..++..|+++.+.+..++..
T Consensus 45 ~~~~~~~l~~~rn~~sk~i~~ 65 (485)
T 3qne_A 45 LRFDLDEHNKKLNSVQKEIGK 65 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443
No 167
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=26.86 E-value=2e+02 Score=24.64 Aligned_cols=25 Identities=28% Similarity=0.433 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHh
Q 045262 349 EALNEMSQRLREENTSLSKEVEKLH 373 (594)
Q Consensus 349 ~~i~ee~~~LR~~NedL~kQVEqLq 373 (594)
..+.+|+..|++.|+.|..=++.+|
T Consensus 56 e~l~eEi~~lk~en~eL~elae~~q 80 (83)
T 1uii_A 56 EQKDNEIARLKKENKELAEVAEHVQ 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666667777777766666554
No 168
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=26.80 E-value=2.4e+02 Score=27.88 Aligned_cols=53 Identities=19% Similarity=0.140 Sum_probs=38.4
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 045262 202 IVMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTK 254 (594)
Q Consensus 202 ~v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~k 254 (594)
+..-|-.++..-..++..|+.++...++|++.+.++++++....+|+-.|--|
T Consensus 165 Ik~yLa~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~ 217 (228)
T 3q0x_A 165 VKQFLAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDK 217 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33444445555556777788899999999999999999988877777655443
No 169
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=26.65 E-value=3.5e+02 Score=24.29 Aligned_cols=64 Identities=11% Similarity=0.157 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHH
Q 045262 254 KIKLLKKKLRTEAEQNREQILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKS 317 (594)
Q Consensus 254 kir~LqkKl~~~a~q~K~qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~ 317 (594)
++..+.+.|+...+-.+.+|.-|.+=|...++.-..=.-...|+..+.+-+.++..+|.+|+..
T Consensus 64 E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l~~~Ei~~Rr~fV~~~r~~I~~mk~~ 127 (130)
T 4dnd_A 64 ELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKFKLPAGDLQERKVFVERMREAVQEMKDH 127 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666667777777777777777666655322111122467888989999999999888764
No 170
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=26.09 E-value=59 Score=26.82 Aligned_cols=28 Identities=29% Similarity=0.267 Sum_probs=14.3
Q ss_pred hhhHHHHHHHHHHHHhhhhhhHHHHHHH
Q 045262 197 KEQETIVMELQNRLKLNNMEGRLLNLKI 224 (594)
Q Consensus 197 KEQEa~v~ELe~~L~~k~~Ei~~L~~kI 224 (594)
+.++..+.+||..|..+..+|..|+..+
T Consensus 21 ~~Kde~I~eLE~~L~~kd~eI~eLr~~L 48 (67)
T 1zxa_A 21 MLKEERIKELEKRLSEKEEEIQELKRKL 48 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555444443
No 171
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=25.94 E-value=2.9e+02 Score=23.14 Aligned_cols=24 Identities=8% Similarity=0.111 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 168 EVKNLKNMVQMLQDREKNLEVELL 191 (594)
Q Consensus 168 EI~~LR~lVeeLqERE~~LE~ELL 191 (594)
++..++..+..|+.+-..++.++.
T Consensus 11 ~~~~~~~~l~~L~~~~~~l~~~i~ 34 (112)
T 1l8d_A 11 KKTTIEEERNEITQRIGELKNKIG 34 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445444444444433
No 172
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=25.90 E-value=1.3e+02 Score=21.44 Aligned_cols=13 Identities=23% Similarity=0.542 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHH
Q 045262 272 QILAVQERVTKLQ 284 (594)
Q Consensus 272 qi~~Lkq~v~~Lq 284 (594)
+|..|||.++.|+
T Consensus 3 eiaalkqeiaalk 15 (33)
T 4dzn_A 3 EIAALKQEIAALK 15 (33)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 4555555555554
No 173
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=25.39 E-value=7.3e+02 Score=27.51 Aligned_cols=42 Identities=21% Similarity=0.309 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 227 LQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQ 268 (594)
Q Consensus 227 LE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q 268 (594)
.|.+.++..++|+++..++.-+..||++|-.++.-++....+
T Consensus 337 ve~~Kki~naevae~~~lrQRlddArNEItsaeSaInslqaq 378 (602)
T 1cii_A 337 VEGDKKIYNAEVAEWDKLRQRLLDARNKITSAESAVNSARNN 378 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777777777777777777777666544433
No 174
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=25.35 E-value=1.3e+02 Score=23.44 Aligned_cols=15 Identities=40% Similarity=0.736 Sum_probs=6.5
Q ss_pred HhHHHHHHHHHHHHH
Q 045262 268 QNREQILAVQERVTK 282 (594)
Q Consensus 268 q~K~qi~~Lkq~v~~ 282 (594)
.++.+|..|+++|..
T Consensus 34 ~AR~el~~Lkeele~ 48 (51)
T 3m91_A 34 EARQQLLALREEVDR 48 (51)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 175
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=24.68 E-value=3.4e+02 Score=23.41 Aligned_cols=17 Identities=35% Similarity=0.454 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q 045262 167 QEVKNLKNMVQMLQDRE 183 (594)
Q Consensus 167 ~EI~~LR~lVeeLqERE 183 (594)
.||..||..=+-|+.|-
T Consensus 21 eev~~lKq~RRtlKNRg 37 (90)
T 2wt7_B 21 DEVIRLKQKRRTLKNRG 37 (90)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhH
Confidence 34444444444444443
No 176
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=24.35 E-value=92 Score=24.32 Aligned_cols=47 Identities=32% Similarity=0.452 Sum_probs=27.8
Q ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 045262 203 VMELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQVADHAKTVSELE 249 (594)
Q Consensus 203 v~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE 249 (594)
|..|++++.-+-.|-..|.--+..||-.|..|+..++.+.+-..-||
T Consensus 5 vaqlknrvayklkenaklenivarlendnanlekdianlekdianle 51 (56)
T 3he4_A 5 VAQLKNRVAYKLKENAKLENIVARLENDNANLEKDIANLEKDIANLE 51 (56)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 44566666666666666777777888888888777766655444443
No 177
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=24.34 E-value=3.3e+02 Score=24.16 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 045262 219 LLNLKIESLQADNRRLEAQVADH 241 (594)
Q Consensus 219 ~L~~kI~sLE~En~RLq~qv~e~ 241 (594)
.|..+++.|+.||.||+.+-...
T Consensus 41 ~LE~~~s~le~e~~rlr~~~~~~ 63 (104)
T 3s9g_A 41 ELEKSLSRMEDENNRLRLESKRL 63 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccc
Confidence 45667788999999998774444
No 178
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=24.33 E-value=6.4e+02 Score=26.46 Aligned_cols=13 Identities=15% Similarity=0.222 Sum_probs=7.9
Q ss_pred hhhHHHHHHhhhc
Q 045262 481 KTKFFHKLRKLVR 493 (594)
Q Consensus 481 K~kLi~KLKKw~~ 493 (594)
+..++..|+++.+
T Consensus 435 ~~~i~~~l~~~~~ 447 (517)
T 4ad8_A 435 AIAVAEQLSRLAD 447 (517)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 4566667776643
No 179
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=24.10 E-value=2.2e+02 Score=22.83 Aligned_cols=39 Identities=15% Similarity=0.209 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHH
Q 045262 272 QILAVQERVTKLQEQAHKAAAIDPDTQSRLQRLKVLEAEA 311 (594)
Q Consensus 272 qi~~Lkq~v~~Lq~~E~e~~~~d~E~ekKlq~lkeLE~Ev 311 (594)
.|.-|+.+-..|+.+ ++....-.|+.+-...++.||.|+
T Consensus 26 rieelkkkweelkkk-ieelggggevkkveeevkkleeei 64 (67)
T 1lq7_A 26 RIEELKKKWEELKKK-IEELGGGGEVKKVEEEVKKLEEEI 64 (67)
T ss_dssp SHHHHHHHHHHHHHH-HHHTTSSSTHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH-HHHhCCCcchhHHHHHHHHHHHHH
Confidence 344555555555543 223344455444444455555554
No 180
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=23.85 E-value=1.6e+02 Score=31.09 Aligned_cols=22 Identities=14% Similarity=0.370 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 045262 219 LLNLKIESLQADNRRLEAQVAD 240 (594)
Q Consensus 219 ~L~~kI~sLE~En~RLq~qv~e 240 (594)
.+..++..|+++.+.+..++..
T Consensus 39 ~~~~~~~~l~~~~n~~sk~i~~ 60 (421)
T 1ses_A 39 ELKKRLQEVQTERNQVAKRVPK 60 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3444445555555555555543
No 181
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=23.44 E-value=3.5e+02 Score=23.12 Aligned_cols=18 Identities=22% Similarity=0.386 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 045262 247 ELEAAKTKIKLLKKKLRT 264 (594)
Q Consensus 247 ELE~ar~kir~LqkKl~~ 264 (594)
+|..+..+|++|...|+.
T Consensus 46 kL~eae~rn~eL~~e~~~ 63 (81)
T 1wt6_A 46 QLREAEARNRDLEAHVRQ 63 (81)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 455555666666544433
No 182
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=23.26 E-value=7.4e+02 Score=26.85 Aligned_cols=8 Identities=25% Similarity=0.708 Sum_probs=3.7
Q ss_pred HHHHHHHH
Q 045262 203 VMELQNRL 210 (594)
Q Consensus 203 v~ELe~~L 210 (594)
|.+|++.|
T Consensus 102 LqeLe~~l 109 (464)
T 1m1j_B 102 LRDLKDRV 109 (464)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444444
No 183
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=22.87 E-value=1.6e+02 Score=24.64 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 045262 216 EGRLLNLKIESLQADNRRLEAQVADH 241 (594)
Q Consensus 216 Ei~~L~~kI~sLE~En~RLq~qv~e~ 241 (594)
....+..++..|+.||..|+.+|..+
T Consensus 37 r~~e~~~r~~~L~~eN~~L~~~v~~L 62 (78)
T 1gu4_A 37 RNLETQHKVLELTAENERLQKKVEQL 62 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556677888888888888777643
No 184
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=22.37 E-value=3.4e+02 Score=22.58 Aligned_cols=50 Identities=20% Similarity=0.318 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 045262 219 LLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQNRE 271 (594)
Q Consensus 219 ~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q~K~ 271 (594)
.+..++..++.+|..|+.+|... ...|+.++.+=.-++..++...++--.
T Consensus 4 ~~~~kLq~~E~~N~~Le~~v~~l---e~~Le~s~~~q~~~~~Elk~~~e~Ld~ 53 (72)
T 3cve_A 4 NSHMKLQEVEIRNKDLEGQLSEM---EQRLEKSQSEQDAFRSNLKTLLEILDG 53 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhhHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45667777888888888777543 455665555555555555544444433
No 185
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=22.34 E-value=2.2e+02 Score=23.84 Aligned_cols=20 Identities=25% Similarity=0.426 Sum_probs=13.9
Q ss_pred HHHHHHhhHHHHHHHHHHhh
Q 045262 355 SQRLREENTSLSKEVEKLHA 374 (594)
Q Consensus 355 ~~~LR~~NedL~kQVEqLq~ 374 (594)
.+.|+..|..|..+|++|+.
T Consensus 68 ~~~L~~~n~~L~~rl~~L~~ 87 (88)
T 1nkp_A 68 EDLLRKRREQLKHKLEQLGG 87 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 34566777777788877764
No 186
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=22.23 E-value=6.1e+02 Score=25.48 Aligned_cols=18 Identities=17% Similarity=0.054 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHhHHHHHH
Q 045262 307 LEAEAEDLRKSNMKLQLE 324 (594)
Q Consensus 307 LE~Ev~ELRr~NkeLQ~E 324 (594)
||.++..++-....+|+.
T Consensus 210 LE~eL~~V~~Rief~qEy 227 (242)
T 3uux_B 210 LEDNLKQIDDRLDFLEEY 227 (242)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 555555555555555543
No 187
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=21.59 E-value=3.6e+02 Score=22.59 Aligned_cols=21 Identities=14% Similarity=0.238 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHhHHHHHHhh
Q 045262 306 VLEAEAEDLRKSNMKLQLENS 326 (594)
Q Consensus 306 eLE~Ev~ELRr~NkeLQ~EKr 326 (594)
+|..++.++.+....|+.+-+
T Consensus 82 ~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 82 KLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333444443344443333
No 188
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=21.31 E-value=3.7e+02 Score=22.68 Aligned_cols=31 Identities=19% Similarity=0.220 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhHh
Q 045262 298 QSRLQRLKVLEAEAEDLRKSNMKLQLENSQL 328 (594)
Q Consensus 298 ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL 328 (594)
+.|.+.++++|..+.|......++..|.+.+
T Consensus 30 e~Rk~~i~~ie~~ldEA~ell~qMelE~~~~ 60 (97)
T 3onj_A 30 SQRNTTLKHVEQQQDELFDLLDQMDVEVNNS 60 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4677889999999999999999999998886
No 189
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=21.30 E-value=2.2e+02 Score=28.07 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHh
Q 045262 348 REALNEMSQRLREENTSLSKEVEKLH 373 (594)
Q Consensus 348 v~~i~ee~~~LR~~NedL~kQVEqLq 373 (594)
+..+.+|+..|++.|+.|..=+|.+|
T Consensus 124 ie~l~eEi~~LkeEn~eLkeLae~~q 149 (209)
T 2wvr_A 124 IEQKDNEIARLKKENKELAEVAEHVQ 149 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777777777777777766665
No 190
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=21.29 E-value=2.5e+02 Score=32.13 Aligned_cols=50 Identities=24% Similarity=0.260 Sum_probs=28.8
Q ss_pred hHhHHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHhhHHHHHHHHHHhhh
Q 045262 326 SQLARRLESTQMLEISVLEDGEREALNEMSQRLREENTSLSKEVEKLHAD 375 (594)
Q Consensus 326 reL~~KL~sAe~~~~~~~E~~ev~~i~ee~~~LR~~NedL~kQVEqLq~d 375 (594)
..|..++..++.++...++...-.=..-|...|+.++++|.++++.|+.-
T Consensus 375 ~~L~~~f~lse~QA~aIL~mrL~rLt~le~~kl~~E~~eL~~~i~~l~~i 424 (716)
T 1zvu_A 375 PALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGI 424 (716)
T ss_dssp HHHHHSTTCCTTHHHHHHTCCGGGGSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555443332221111345667888888888888888753
No 191
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=21.28 E-value=1.1e+02 Score=22.30 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=17.4
Q ss_pred HHHHHHHHhhHHHHHHHHHHhh
Q 045262 353 EMSQRLREENTSLSKEVEKLHA 374 (594)
Q Consensus 353 ee~~~LR~~NedL~kQVEqLq~ 374 (594)
..+..|...|.+|..+|+.|+.
T Consensus 7 ~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 7 AKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 3345688889999999999874
No 192
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=21.25 E-value=2.3e+02 Score=24.32 Aligned_cols=19 Identities=21% Similarity=0.267 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 045262 217 GRLLNLKIESLQADNRRLE 235 (594)
Q Consensus 217 i~~L~~kI~sLE~En~RLq 235 (594)
|+.+...|..|..+|..|+
T Consensus 55 ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 55 IEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555554
No 193
>1deb_A APC protein, adenomatous polyposis coli protein; coiled coil, tumor suppressor, structural protein; 2.40A {Homo sapiens} SCOP: h.1.18.1
Probab=21.15 E-value=3.1e+02 Score=21.71 Aligned_cols=46 Identities=24% Similarity=0.398 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 045262 217 GRLLNLKIESLQADNRRLEAQVADHAKTVSELEAAKTKIKLLKKKL 262 (594)
Q Consensus 217 i~~L~~kI~sLE~En~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl 262 (594)
-|-|...++.|..||.-|+.++.+...-...||---.-++++=+++
T Consensus 5 YdQL~~QVe~Lk~ENshLrrEL~dNS~~lskLE~ets~mKevlk~l 50 (54)
T 1deb_A 5 YDQLLKQVEALKMENSNLRQELEDNSNHLTKLETEASNMKEVLKQL 50 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHhhhhhHHHHHHHH
Confidence 3456666777777777777777666665555554444444444333
No 194
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=20.88 E-value=4.3e+02 Score=24.71 Aligned_cols=81 Identities=12% Similarity=0.106 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHhhh------chhhHHHHHHHHHHHHhhhhhh------------HHHHHHHHHHHHHHHHHHHHH
Q 045262 177 QMLQDREKNLEVELLEYYG------LKEQETIVMELQNRLKLNNMEG------------RLLNLKIESLQADNRRLEAQV 238 (594)
Q Consensus 177 eeLqERE~~LE~ELLEyy~------LKEQEa~v~ELe~~L~~k~~Ei------------~~L~~kI~sLE~En~RLq~qv 238 (594)
..+.+.+..|+..+-.... .++.+.....|+....+...-. .-+...+...++-.+.+.+++
T Consensus 10 ~~~~e~~~~l~~~~~~~~~~~~~a~~~~le~e~~kl~~e~~i~eas~~~~~~~~le~~~~~l~rdleasr~akk~~ea~l 89 (146)
T 2xnx_M 10 KELEEKKEALELAIDQASRDYHRATALEKELEEKKKALELAIDQASQDYNRANVLEKELEAITREQEINRNLLGNAKLEL 89 (146)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHTTTTTTHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHHHHHHhHHHHH
Q ss_pred HHHHhHHHHHHHHHHHHHH
Q 045262 239 ADHAKTVSELEAAKTKIKL 257 (594)
Q Consensus 239 ~e~~~v~~ELE~ar~kir~ 257 (594)
+....-..+|++-..|+.+
T Consensus 90 a~l~~~~~~LeAE~aKLeE 108 (146)
T 2xnx_M 90 DQLSSEKEQLTIEKAKLEE 108 (146)
T ss_dssp HHHHHHHHHHHHHHHHHGG
T ss_pred HHHHhhHHHHHHHHHHHHH
No 195
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=20.67 E-value=1.2e+02 Score=22.14 Aligned_cols=26 Identities=15% Similarity=0.270 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhHh
Q 045262 303 RLKVLEAEAEDLRKSNMKLQLENSQL 328 (594)
Q Consensus 303 ~lkeLE~Ev~ELRr~NkeLQ~EKreL 328 (594)
++..||..|+||=..|..|+.|-.-|
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RL 27 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARI 27 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 45667888888777777777664443
No 196
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=20.62 E-value=1.2e+02 Score=22.17 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHhhHh
Q 045262 303 RLKVLEAEAEDLRKSNMKLQLENSQL 328 (594)
Q Consensus 303 ~lkeLE~Ev~ELRr~NkeLQ~EKreL 328 (594)
+++.||..|+||=..+..|+.|-.-|
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl 27 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARV 27 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHH
Confidence 46678888888888888777775554
No 197
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=20.55 E-value=2.9e+02 Score=25.65 Aligned_cols=11 Identities=36% Similarity=0.607 Sum_probs=7.1
Q ss_pred HHHHHHHhhhc
Q 045262 186 LEVELLEYYGL 196 (594)
Q Consensus 186 LE~ELLEyy~L 196 (594)
-..++-||+.|
T Consensus 54 F~~dy~EYk~L 64 (140)
T 1xaw_A 54 FDTGLQEYKSL 64 (140)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHhHHHHHHH
Confidence 45666777766
No 198
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=20.45 E-value=1.6e+02 Score=31.17 Aligned_cols=35 Identities=14% Similarity=-0.021 Sum_probs=18.4
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 045262 204 MELQNRLKLNNMEGRLLNLKIESLQADNRRLEAQV 238 (594)
Q Consensus 204 ~ELe~~L~~k~~Ei~~L~~kI~sLE~En~RLq~qv 238 (594)
..|+.+|.....++..+..++..++++++.+.+++
T Consensus 6 ~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l 40 (412)
T 3u06_A 6 AALSTEVVHLRQRTEELLRCNEQQAAELETCKEQL 40 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555544444455555555555555555555544
No 199
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=20.41 E-value=1.8e+02 Score=31.59 Aligned_cols=9 Identities=33% Similarity=0.611 Sum_probs=3.6
Q ss_pred HHHHHHhhc
Q 045262 392 CLRYELRNY 400 (594)
Q Consensus 392 CLR~ELrn~ 400 (594)
|-|+|...|
T Consensus 277 cfR~Eag~~ 285 (485)
T 3qne_A 277 CFRREAGSH 285 (485)
T ss_dssp EECSCCC--
T ss_pred cccCCCCCC
Confidence 555554433
No 200
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=20.27 E-value=1.3e+02 Score=21.94 Aligned_cols=25 Identities=20% Similarity=0.102 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHhhHh
Q 045262 304 LKVLEAEAEDLRKSNMKLQLENSQL 328 (594)
Q Consensus 304 lkeLE~Ev~ELRr~NkeLQ~EKreL 328 (594)
++.||..|+||=..|..|+.|-.-|
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl 26 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARN 26 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4568888888877777777775444
No 201
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=20.21 E-value=7.6e+02 Score=25.85 Aligned_cols=40 Identities=20% Similarity=0.214 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHhhHhHHhhhhhhh
Q 045262 298 QSRLQRLKVLEAEAEDLRKSNMKLQLENSQLARRLESTQM 337 (594)
Q Consensus 298 ekKlq~lkeLE~Ev~ELRr~NkeLQ~EKreL~~KL~sAe~ 337 (594)
..++..+...+..+.++......+......++..|.....
T Consensus 298 ~~~l~~l~~~~~~l~~l~~~~~~~~~~~~~~~~~L~~~R~ 337 (517)
T 4ad8_A 298 AEELAGLEEDERDAGSLQADVDALHAELLKVGQALDAARE 337 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666666666666666666555544433
No 202
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=20.05 E-value=5.4e+02 Score=27.93 Aligned_cols=73 Identities=22% Similarity=0.235 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------hHHHHHHH----HHH-HHHH
Q 045262 232 RRLEAQVADHAKTVSELEAAKTKIKLLKKKLRTEAEQ-----------------------NREQILAV----QER-VTKL 283 (594)
Q Consensus 232 ~RLq~qv~e~~~v~~ELE~ar~kir~LqkKl~~~a~q-----------------------~K~qi~~L----kq~-v~~L 283 (594)
..+-+.-.+...+..+++..|++.+.+.|+|-...+. +++++..| ..+ +..|
T Consensus 37 d~~~~ld~~~r~~~~~~~~l~~~rN~~sk~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l 116 (484)
T 3lss_A 37 DAIIEADKKWRRTQFLTEASKKLINICSKAVGAKKKAKEADGDTSEIPPQVKEAYENGTLKGEQVEQLCVLQLKQLSKDL 116 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC----------------------------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccccccccchhhHHHhhHHHHHHHHHHH
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHHHHHHHHHHHhHHH
Q 045262 284 QEQAHKAAAIDPDTQSRLQRLKVLEAEAEDLRKSNMKL 321 (594)
Q Consensus 284 q~~E~e~~~~d~E~ekKlq~lkeLE~Ev~ELRr~NkeL 321 (594)
..+ ++.||.++.++.....++
T Consensus 117 ~~~-----------------i~~le~~~~~~~~~~~~~ 137 (484)
T 3lss_A 117 SDQ-----------------VAGLAKEAQQLEEERDKL 137 (484)
T ss_dssp HHH-----------------HHHHHHHHHHHHHHHHHH
T ss_pred HHH-----------------HHHHHHHHHHHHHHHHHH
No 203
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=20.02 E-value=1.7e+02 Score=21.51 Aligned_cols=26 Identities=23% Similarity=0.093 Sum_probs=18.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH
Q 045262 214 NMEGRLLNLKIESLQADNRRLEAQVA 239 (594)
Q Consensus 214 ~~Ei~~L~~kI~sLE~En~RLq~qv~ 239 (594)
+...-.+-.++..||.+|.+|+.++.
T Consensus 12 NdrlAsyidkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 12 NDRFANYIDKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556678889999998887764
Done!