Your job contains 1 sequence.
>045263
MALTVAVSQSCGMCFGGKQLRCAIILKAGRGCRNVLGTNMRFSNLLLPKIPKICSRSKHK
YAECMLKLVEPYDESSIPQPKLLKKASVVMGYDSLNDLFKYGRADKDAMDDFDISLACKR
FPCITLGSTPPVGLYDETKAGGSEMKSLLADQSCEAVVSNPMDAELRVDRFGLSEAWPSL
YPALPNESSTSSEVGSLPSEASIEPLLDKCISCVPGLSKRLYHQLENCGFYTLRKLLHHF
PRTYADLQNAQIDLDDGQYFIFIGEIISSRGMKAGCSFSFLEVIVGCEIADTETTSGDEV
VNIDSGQKKKIYLHLKKFFRGTRFTSIPFLKSIEGKHKVGEFVCVSGKVRAMRSNNHYEM
REYNIDVLKDEDDLSLRAKGRPYPIYPSKGGLNASLLRDTIARALQALPANFDPVPKEIT
QEFGLLCLFDAYMGIHQPKHIDEADLARKRLIFDEFFYLQLGRLYQMLEGLGTQFEKEGL
LDKYRKPRLNAAYMEGWSSLTKKLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGD
VGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLT
GSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNS
KLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPP
GRIPIKTYIIEGNEKGYENVYK
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 045263
(742 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2049541 - symbol:AT2G01440 species:3702 "Arabi... 1977 2.3e-227 2
TIGR_CMR|GSU_1326 - symbol:GSU_1326 "ATP-dependent DNA he... 440 4.8e-51 3
TIGR_CMR|CHY_1468 - symbol:CHY_1468 "ATP-dependent DNA he... 433 4.2e-50 3
TIGR_CMR|DET_1268 - symbol:DET_1268 "ATP-dependent DNA he... 477 7.1e-46 2
UNIPROTKB|P64322 - symbol:recG "ATP-dependent DNA helicas... 474 1.2e-42 1
TIGR_CMR|BA_3993 - symbol:BA_3993 "ATP-dependent DNA heli... 381 2.8e-42 3
TIGR_CMR|ECH_0062 - symbol:ECH_0062 "ATP-dependent DNA he... 321 4.4e-39 4
TIGR_CMR|CBU_0305 - symbol:CBU_0305 "ATP-dependent DNA he... 356 5.1e-39 3
TIGR_CMR|SPO_1681 - symbol:SPO_1681 "ATP-dependent DNA he... 360 5.6e-39 2
TIGR_CMR|APH_1298 - symbol:APH_1298 "ATP-dependent DNA he... 308 5.3e-38 4
UNIPROTKB|P24230 - symbol:recG "RecG DNA helicase" specie... 329 1.1e-37 3
UNIPROTKB|Q9KNM1 - symbol:VC_2711 "ATP-dependent DNA heli... 317 1.7e-36 3
TIGR_CMR|VC_2711 - symbol:VC_2711 "ATP-dependent DNA heli... 317 1.7e-36 3
TIGR_CMR|SO_4364 - symbol:SO_4364 "ATP-dependent DNA heli... 316 5.8e-36 3
UNIPROTKB|Q0C0Q6 - symbol:HNE_1987 "Putative ATP-dependen... 317 2.3e-33 3
TIGR_CMR|CHY_0200 - symbol:CHY_0200 "transcription-repair... 289 2.6e-27 2
TIGR_CMR|DET_1281 - symbol:DET_1281 "transcription-repair... 272 3.0e-25 2
TIGR_CMR|NSE_0690 - symbol:NSE_0690 "ATP-dependent DNA he... 276 1.1e-23 2
TIGR_CMR|BA_0052 - symbol:BA_0052 "transcription-repair c... 255 1.4e-23 2
TAIR|locus:2078673 - symbol:AT3G02060 species:3702 "Arabi... 242 4.8e-23 2
TIGR_CMR|CBU_1148 - symbol:CBU_1148 "transcription-repair... 257 1.8e-22 2
TIGR_CMR|GSU_0017 - symbol:GSU_0017 "transcription-repair... 237 6.3e-22 4
TIGR_CMR|SO_2255 - symbol:SO_2255 "transcription-repair c... 250 1.8e-21 2
UNIPROTKB|P64326 - symbol:mfd "Transcription-repair-coupl... 244 2.2e-21 2
UNIPROTKB|Q9KQW2 - symbol:VC1886 "Transcription-repair co... 252 5.7e-21 3
TIGR_CMR|VC_1886 - symbol:VC_1886 "transcription-repair c... 252 5.7e-21 3
TIGR_CMR|SPO_2074 - symbol:SPO_2074 "transcription-repair... 241 8.1e-21 3
UNIPROTKB|P30958 - symbol:mfd species:83333 "Escherichia ... 244 9.6e-21 2
TIGR_CMR|ECH_0250 - symbol:ECH_0250 "transcription-repair... 243 1.2e-20 3
TIGR_CMR|APH_0107 - symbol:APH_0107 "transcription-repair... 246 2.4e-20 3
TIGR_CMR|CJE_1228 - symbol:CJE_1228 "transcription-repair... 218 9.1e-18 3
TIGR_CMR|CJE_0514 - symbol:CJE_0514 "ATP-dependent DNA he... 209 5.8e-17 2
>TAIR|locus:2049541 [details] [associations]
symbol:AT2G01440 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR001650 InterPro:IPR004609 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 EMBL:CP002685 GO:GO:0006281 GO:GO:0003676
GO:GO:0006310 GO:GO:0004003 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K03655
TIGRFAMs:TIGR00643 IPI:IPI00538003 RefSeq:NP_178253.3
UniGene:At.69110 ProteinModelPortal:F4INA9 SMR:F4INA9 PRIDE:F4INA9
EnsemblPlants:AT2G01440.1 GeneID:814672 KEGG:ath:AT2G01440
OMA:MIIYNSE Uniprot:F4INA9
Length = 973
Score = 1977 (701.0 bits), Expect = 2.3e-227, Sum P(2) = 2.3e-227
Identities = 378/554 (68%), Positives = 456/554 (82%)
Query: 189 STSSEVGSLPSEA-SIEPLLDKCISCVPGLSKRLYHQLENCGFYTLRKLLHHFPRTYADL 247
+ +SEV + + + + L I +PGLSKR +QL++CGF+T++KLLHHFPRTYADL
Sbjct: 198 TATSEVEATSDDVFAAQRFLATSIDSMPGLSKRHSNQLDSCGFHTMKKLLHHFPRTYADL 257
Query: 248 QNAQIDLDDGQYFIFIGEIISSRGMKAGCSFSFLEVIVGCEIADTETTSGDEVVNIDSGQ 307
QNAQ+D++DGQY IF+G+++SS+G++A SFSFLEVIV CE++ + T D N +
Sbjct: 258 QNAQVDIEDGQYLIFVGKVLSSKGVRASSSFSFLEVIVSCEVSGRDRTPEDLSHNAEDKA 317
Query: 308 KKKIYLHLKKFFRGTRFTSIPFLKSIEGKHKVGEFVCVSGKVRAMRSNNHYEMREYNIDV 367
K I+LHLKKFFRGTRFT PFL SI+ KHKVG+ VC+SGKV+++R+ +H+EMREYNIDV
Sbjct: 318 GKSIFLHLKKFFRGTRFTWQPFLNSIQEKHKVGDLVCISGKVKSLRAEDHFEMREYNIDV 377
Query: 368 LKDEDDLSLRAKGRPYPIYPSKGGLNASLLRDTIARALQALPANFDPVPKEITQEFGLLC 427
LKDE++ S RA+GRPYPIYPSKGGLN L D I+RAL+ LPAN DP+PKEIT+ FGL
Sbjct: 378 LKDEEESSHRAQGRPYPIYPSKGGLNPKFLSDVISRALRVLPANMDPIPKEITKVFGLPS 437
Query: 428 LFDAYMGIHQPKHIDEADLARKRLIFDEFFYLQLGRLYQMLEGLGTQFEKEGLLDKYRKP 487
L DAY+GIH+PK +DEADLARKRLIFDEFFYLQL RLYQML+ LGT+ EK+ LL+K+RKP
Sbjct: 438 LNDAYVGIHEPKTLDEADLARKRLIFDEFFYLQLARLYQMLQSLGTKIEKDVLLEKFRKP 497
Query: 488 RLNAAYMEGWSSLTKKLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTV 547
LN+ Y+E WS+LTK L+ALPYSLT SQLSA+SEIIWDLK+PVPMNRLLQGDVGCGKTV
Sbjct: 498 VLNSVYIEEWSTLTKSFLKALPYSLTPSQLSAVSEIIWDLKRPVPMNRLLQGDVGCGKTV 557
Query: 548 VAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQ 607
VAFLACMEVIGSGYQAAFM PTELLA QHYE LL+NME KP I LLTGSTP KQ
Sbjct: 558 VAFLACMEVIGSGYQAAFMAPTELLAIQHYEQCRDLLENMEGVSSKPTIGLLTGSTPAKQ 617
Query: 608 SRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSM 667
SRMIR+DLQ+G I+ +IGTHSLIAEK+E+SALR+A+VDEQQRFGV+QRG+FNSKLY TSM
Sbjct: 618 SRMIRQDLQSGAISFIIGTHSLIAEKIEYSALRIAVVDEQQRFGVIQRGKFNSKLYGTSM 677
Query: 668 SSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKT 727
S +SD + K D MAPHVLAMSATPIPR+LALALYGD+SLTQIT +P GRIP++T
Sbjct: 678 ISKSGSSDSDDTSKADLSMAPHVLAMSATPIPRSLALALYGDISLTQITGMPLGRIPVET 737
Query: 728 YIIEGNEKGYENVY 741
+I EGNE G + VY
Sbjct: 738 HIFEGNETGIKEVY 751
Score = 240 (89.5 bits), Expect = 2.3e-227, Sum P(2) = 2.3e-227
Identities = 68/188 (36%), Positives = 101/188 (53%)
Query: 6 AVSQS-CGMCFGGKQLRCAIILKAGRGCRNVLGTNMRFSNLLLPKIPKICSRSKHKYAEC 64
AV+ S C MC G ++LR I+++A RG N +R SN K+ I RSKHKY++
Sbjct: 3 AVTLSPCSMCCGSRRLRSVIVIQAQRGNWN----RIRLSNFFFSKVWNISYRSKHKYSDN 58
Query: 65 MLKLVEPYDESSIP-QPKLLKKASVVMGYDSLNDLFKYGRADKDAMDDFDISLACKRFPC 123
+L+ VE Y + + Q KL+ K + +M D+++D F ++D+ D + LACKRFP
Sbjct: 59 LLEQVEKYASARLENQSKLITKVAALMECDNVDD-FIDKKSDEQVKKD--LVLACKRFPS 115
Query: 124 ITLGSTPPVGLYDETKAGGSEMKSLLADQSCEAVVSNPMDAELRVDRFGLSEAWPSLYPA 183
I LG + PV LY +K+ G E S+L + + + PM D LS S P
Sbjct: 116 IILGDSRPVELYSNSKSYG-ESSSILKTPTDNSFLPTPMHGGW-FDPDNLSRTLSSFCPE 173
Query: 184 L-PNESST 190
L N+ S+
Sbjct: 174 LLQNDDSS 181
Score = 45 (20.9 bits), Expect = 7.9e-16, Sum P(2) = 7.9e-16
Identities = 24/105 (22%), Positives = 42/105 (40%)
Query: 593 KPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGV 652
K LL G ++G+ +++ T +I V+ + +V +RFG+
Sbjct: 796 KYNCGLLHGRMKSDDKEEALNKFRSGETQILLSTQ-VIEIGVDVPDASMMVVMNAERFGI 854
Query: 653 VQ----RGRFN-----SK-LYYTSMSSGMAMVNSDGSPKDDQHMA 687
Q RGR SK L S ++ + +N G D ++A
Sbjct: 855 AQLHQLRGRVGRGTRKSKCLLVGSSTNSLKRLNMLGKSSDGFYLA 899
>TIGR_CMR|GSU_1326 [details] [associations]
symbol:GSU_1326 "ATP-dependent DNA helicase RecG"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR004609 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006281
GO:GO:0003676 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0006310
GO:GO:0004003 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K03655
ProtClustDB:PRK10917 TIGRFAMs:TIGR00643 HOGENOM:HOG000036618
RefSeq:NP_952379.2 GeneID:2688056 KEGG:gsu:GSU1326 PATRIC:22025427
BioCyc:GSUL243231:GH27-1321-MONOMER Uniprot:Q74DJ0
Length = 767
Score = 440 (159.9 bits), Expect = 4.8e-51, Sum P(3) = 4.8e-51
Identities = 112/290 (38%), Positives = 159/290 (54%)
Query: 380 GRPYPIYPSKGGLNASLLRDTIARALQAL-PANFDPVPKEITQEFGLLCLFDAYMGIH-- 436
GR P+YP GLN LR + + P +P + +E LL L +A +H
Sbjct: 215 GRLVPVYPLTEGLNQKALRKVMKEVVDRFAPCVESALPARVIRERALLPLAEALGAVHFP 274
Query: 437 ----QPKHIDEA-DLARKRLIFDEFFYLQLGRLYQMLEGLGTQFEKEGLLDKYRKPRLNA 491
P+ ++E D A + L+FDEFF+L+LG L+ G E G+ +N
Sbjct: 275 AADADPRALEEGRDPAHRTLVFDEFFFLELGLA---LKRRGVTLEP-GIAFS-----VNH 325
Query: 492 AYMEGWSSLTKKLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFL 551
Y TK LL+ LP++LT +Q ++EI D+ P PM+RL+QGDVGCGKT+VA L
Sbjct: 326 TY-------TKPLLKLLPFALTEAQRRVLAEIKADMMAPHPMHRLVQGDVGCGKTLVALL 378
Query: 552 ACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMI 611
A + + +GYQ A M PTE+LA QHY ++ + + + +ALLT S K
Sbjct: 379 AALVAVENGYQVAIMAPTEILAEQHYLNIHRWCEQLGVT-----VALLTSSLKGKAKAGA 433
Query: 612 RKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSK 661
+ + G++ +VIGTH++I +KVEF L L IVDEQ RFGV+QRG K
Sbjct: 434 LERVARGEVQIVIGTHAVIQDKVEFHRLGLGIVDEQHRFGVLQRGLLRKK 483
Score = 142 (55.0 bits), Expect = 4.8e-51, Sum P(3) = 4.8e-51
Identities = 25/42 (59%), Positives = 35/42 (83%)
Query: 688 PHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYI 729
P +L M+ATPIPRTLA+ ++GD+SL+ I +LPPGR P++T I
Sbjct: 487 PDILVMTATPIPRTLAMTVFGDLSLSVIDELPPGRTPVETKI 528
Score = 58 (25.5 bits), Expect = 4.8e-51, Sum P(3) = 4.8e-51
Identities = 18/80 (22%), Positives = 34/80 (42%)
Query: 207 LDKCISCVPGLSKRLYHQLENCGFYTLRKLLHHFPRTYADLQNA--QIDLDDGQYFIFIG 264
L+ + + G+ ++ L G T+ L+ P Y D + L G+ +F G
Sbjct: 65 LETPMQFIKGVGPKMAEILARKGIVTVEDALYLLPNRYEDRRQVVPMNRLRPGETCVFAG 124
Query: 265 EIISSRGMKAGCSFSFLEVI 284
E++S+ + F EV+
Sbjct: 125 EVVSADVVTTKGGRRFFEVM 144
Score = 48 (22.0 bits), Expect = 7.0e-06, Sum P(2) = 7.0e-06
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 526 DLKQPVPMNRLLQGD--VGCGKTVVA 549
D +Q VPMNRL G+ V G+ V A
Sbjct: 104 DRRQVVPMNRLRPGETCVFAGEVVSA 129
>TIGR_CMR|CHY_1468 [details] [associations]
symbol:CHY_1468 "ATP-dependent DNA helicase RecG"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0006310 "DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR004609 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006281 GO:GO:0003676 GO:GO:0006310
GO:GO:0004003 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG1200
KO:K03655 ProtClustDB:PRK10917 TIGRFAMs:TIGR00643
RefSeq:YP_360300.1 ProteinModelPortal:Q3AC34 STRING:Q3AC34
GeneID:3726707 KEGG:chy:CHY_1468 PATRIC:21276067
HOGENOM:HOG000036619 OMA:ETYWVKH
BioCyc:CHYD246194:GJCN-1467-MONOMER Uniprot:Q3AC34
Length = 677
Score = 433 (157.5 bits), Expect = 4.2e-50, Sum P(3) = 4.2e-50
Identities = 117/307 (38%), Positives = 167/307 (54%)
Query: 362 EYNIDVLKDED-DLSLRAKGRPYPIYPSKGGLNASLLRDTIARALQA-LPANFDPVPKEI 419
E NI V + E D L R PIYP L+ R I AL L +P+P+EI
Sbjct: 120 ETNIYVYEYEFWDKELLHTNRLVPIYPLTENLSPKTFRQLIKNALDKYLEEITEPLPEEI 179
Query: 420 TQEFGLLCLFDAYMGIHQPKHIDEADLARKRLIFDEFFYLQLGRLYQMLEGLGTQFEKEG 479
+++ L L A M +H P+ ++++LAR+R++F+EF L+ + GL KE
Sbjct: 180 LRKYSLPDLKQALMNLHFPESSEQSELARRRMVFEEFL------LFFLAIGL----YKEN 229
Query: 480 LLDKYRKPRLNAAYMEGWSSLTKKLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQG 539
+KP + A G L KK + +LP+ LTS+Q EI DL PMNRL+QG
Sbjct: 230 Y---QKKPGIVIA---GSGELEKKFIDSLPFKLTSAQEKVWREIKEDLAAKKPMNRLVQG 283
Query: 540 DVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALL 599
DVG GKT++A LA ++ + +G+Q A M PTE+LA QHY +L +L + K+ LL
Sbjct: 284 DVGSGKTILAALALVKAVEAGFQGALMAPTEILAEQHYLNLSRLFAPLGI-----KVVLL 338
Query: 600 TGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFN 659
+GS + + K ++ G ++IGTH+LI E V F L LA++DEQ RFGV QR
Sbjct: 339 SGSLSSGKKEAVYKAIKNGYADVIIGTHALIQEAVIFDNLGLAVIDEQHRFGVEQRSSLV 398
Query: 660 SKLYYTS 666
K Y +
Sbjct: 399 EKGLYVN 405
Score = 144 (55.7 bits), Expect = 4.2e-50, Sum P(3) = 4.2e-50
Identities = 28/46 (60%), Positives = 34/46 (73%)
Query: 691 LAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNEKG 736
L MSATPIPRTLAL LYGD+ ++ + LP GR PIKTY + +KG
Sbjct: 407 LVMSATPIPRTLALTLYGDLDVSIVDALPAGRKPIKTYWLSSQDKG 452
Score = 47 (21.6 bits), Expect = 4.2e-50, Sum P(3) = 4.2e-50
Identities = 9/40 (22%), Positives = 21/40 (52%)
Query: 207 LDKCISCVPGLSKRLYHQLENCGFYTLRKLLHHFPRTYAD 246
+D + + G+ + L+ T++ L+++FP+ Y D
Sbjct: 1 MDIPVQYLKGVGPQKAKLLQKLKIETVKDLIYYFPKRYED 40
>TIGR_CMR|DET_1268 [details] [associations]
symbol:DET_1268 "ATP-dependent DNA helicase RecG"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR004609 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006281
GO:GO:0003676 GO:GO:0006310 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0004003 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG1200
KO:K03655 ProtClustDB:PRK10917 TIGRFAMs:TIGR00643
HOGENOM:HOG000036619 OMA:ETYWVKH RefSeq:YP_181980.1
ProteinModelPortal:Q3Z719 STRING:Q3Z719 GeneID:3229414
KEGG:det:DET1268 PATRIC:21609563
BioCyc:DETH243164:GJNF-1269-MONOMER Uniprot:Q3Z719
Length = 740
Score = 477 (173.0 bits), Expect = 7.1e-46, Sum P(2) = 7.1e-46
Identities = 132/371 (35%), Positives = 194/371 (52%)
Query: 372 DDLSLRAKGRPYPIYPSKGGLNASLLRDTIARALQ-ALPANFDPVPKEITQEFGLLCLFD 430
D+ L GR P+YP GL+ LR + + + P D +P++ + LL L +
Sbjct: 173 DEADLIHTGRLVPVYPLTAGLHQRSLRRLMKNFIDISTPGISDFLPEDTLKRTRLLPLAE 232
Query: 431 AYMGIHQPKHIDEADLARKRLIFDEFFYLQLGRLYQMLEGLGTQFEKEGLLDKYRKPRLN 490
A H P + D AR RL FDE F LQLG L + E+ G K P ++
Sbjct: 233 AIRQAHFPDTEELKDAARNRLAFDELFILQLGVLAKKKRWQ----EQTGRALKINLPAID 288
Query: 491 AAYMEGWSSLTKKLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAF 550
+ LP+ LT +Q +++I D+ + VPM+RLLQG+VG GKT+VA
Sbjct: 289 ------------HFISQLPFKLTDAQTKCLADIKADISKSVPMSRLLQGEVGSGKTIVAV 336
Query: 551 LACMEVIGSGYQAAFMVPTELLATQHYEHLLKL----------LDNM---EEDKHKP-KI 596
++ +G Q AFM PTE+LA QH++ + +L LD + E +P ++
Sbjct: 337 ISLFTAAANGLQGAFMAPTEILAEQHFKSVTRLFASIAKVSTLLDGVYTFEGLLDRPLRV 396
Query: 597 ALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRG 656
AL+ Q ++++ ++ G+I + IGTH+LI +++ F +L LA++DEQ RFGV QR
Sbjct: 397 ALMISDMKSSQKDILKEKIKKGEIDIAIGTHALIQKEIRFKSLGLAVIDEQHRFGVEQRS 456
Query: 657 RFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQIT 716
SK G+ N PH+L M+ATPIPRTLAL LYG++ L+ I
Sbjct: 457 ALRSK--------GL---N------------PHILIMTATPIPRTLALTLYGELDLSVID 493
Query: 717 DLPPGRIPIKT 727
+LPPGR IKT
Sbjct: 494 ELPPGRQSIKT 504
Score = 67 (28.6 bits), Expect = 7.1e-46, Sum P(2) = 7.1e-46
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 198 PSEASIEPLLDKCISCVPGLSKRLYHQLENCGFYTLRKLLHHFPRTYAD 246
P P LD I V G+S + G T+R LL++FP + D
Sbjct: 33 PKTDGCPPALDGDIYLVKGISAATAPKFHKMGINTVRDLLYYFPNRHLD 81
>UNIPROTKB|P64322 [details] [associations]
symbol:recG "ATP-dependent DNA helicase RecG" species:1773
"Mycobacterium tuberculosis" [GO:0005886 "plasma membrane"
evidence=IDA] InterPro:IPR001650 InterPro:IPR004609
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005886 GO:GO:0005524 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0003677
GO:GO:0006281 GO:GO:0006310 GO:GO:0004003 EMBL:BX842581
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG1200
KO:K03655 ProtClustDB:PRK10917 TIGRFAMs:TIGR00643 PIR:B70672
RefSeq:NP_217489.1 RefSeq:NP_337563.1 RefSeq:YP_006516428.1
ProteinModelPortal:P64322 SMR:P64322 PhosSite:P12061602
EnsemblBacteria:EBMYCT00000001827 EnsemblBacteria:EBMYCT00000069739
GeneID:13317769 GeneID:887439 GeneID:925224 KEGG:mtc:MT3051
KEGG:mtu:Rv2973c KEGG:mtv:RVBD_2973c PATRIC:18128470
TubercuList:Rv2973c HOGENOM:HOG000036618 OMA:PHVLTMT Uniprot:P64322
Length = 737
Score = 474 (171.9 bits), Expect = 1.2e-42, P = 1.2e-42
Identities = 125/361 (34%), Positives = 193/361 (53%)
Query: 381 RPYPIYPSKGGLNASLLRDTIARALQALPANFDPVPKEITQEFGLLCLFDAYMGIHQPKH 440
R +PIYP+ + + + + + L L DP+P E+ + GL+ +A IH +
Sbjct: 172 RFFPIYPASTKVQSWDIFKCVRQVLDVLDRVDDPLPAELRAKHGLIPEDEALRAIHLAES 231
Query: 441 IDEADLARKRLIFDEFFYLQLGRLYQMLEGLGTQFEKEGLLDKYRKPRLNAAYMEGWSSL 500
+ AR+RL FDE LQ L G + + G P +AA+ + L
Sbjct: 232 QSLRERARERLTFDEAVGLQWA-LVARRHG---ELSESG-------P--SAAWKS--NGL 276
Query: 501 TKKLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSG 560
+LLR LP+ LT+ Q + + L P+NRLLQG+VG GKT+VA LA ++++ +G
Sbjct: 277 AAELLRRLPFELTAGQREVLDVLSDGLAANRPLNRLLQGEVGSGKTIVAVLAMLQMVDAG 336
Query: 561 YQAAFMVPTELLATQHYEHLLKLLDNMEED------KHKPKIALLTGSTPVKQSRMIRKD 614
YQ A + PTE+LA QH + +L + ++ ++ALLTGS Q + +R +
Sbjct: 337 YQCALLAPTEVLAAQHLRSIRDVLGPLAMGGQLGGAENATRVALLTGSMTAGQKKQVRAE 396
Query: 615 LQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMV 674
+ +G + +VIGTH+L+ E V+F L + +VDEQ RFGV QR + +K
Sbjct: 397 IASGQVGIVIGTHALLQEAVDFHNLGMVVVDEQHRFGVEQRDQLRAK------------- 443
Query: 675 NSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNE 734
+P + PH+L M+ATPIPRT+AL +YGD+ + + +LP GR PI T +I +
Sbjct: 444 ----APAG---ITPHLLVMTATPIPRTVALTVYGDLETSTLRELPLGRQPIATNVIFVKD 496
Query: 735 K 735
K
Sbjct: 497 K 497
Score = 219 (82.2 bits), Expect = 2.7e-14, P = 2.7e-14
Identities = 112/458 (24%), Positives = 198/458 (43%)
Query: 226 ENCGFYTLRKLLHHFPRTYADLQNAQIDLDD-----GQYFIFIGEIISSRG--MKAGCSF 278
E G T+ LL H+PR+Y + A++ + D G++ + I + MK +
Sbjct: 22 EQFGMRTVDDLLRHYPRSYVE-GAARVGIGDARPEAGEHITIVDVITDTYSFPMKKKPNR 80
Query: 279 SFLEVIVGC-EIADTETTSGDEVVNIDSGQKKKIYLHLKK-FFRGTRFTSIP---FLKSI 333
L + VG T T + + D + K+ L + +++G + P L S
Sbjct: 81 KCLRITVGGGRNKVTATFFNADYIMRDLTKHTKVMLSGEVGYYKGAMQLTHPAFLILDSP 140
Query: 334 EGK-HKVGEFVCVSGKVRAMRSNNHYEMREYNIDVLKDEDDLSLRAKGRPYPIYPSKGGL 392
+GK H ++ +A+ + + E+ + R +PIYP+ +
Sbjct: 141 DGKNHGTRSLKSIADASKAI--SGELVVEEF---------------ERRFFPIYPASTKV 183
Query: 393 NASLLRDTIARALQALPANFDPVPKEITQEFGLLCLFDAYMGIHQPKHIDEADLARKRLI 452
+ + + + L L DP+P E+ + GL+ +A IH + + AR+RL
Sbjct: 184 QSWDIFKCVRQVLDVLDRVDDPLPAELRAKHGLIPEDEALRAIHLAESQSLRERARERLT 243
Query: 453 FDEFFYLQ---LGRLYQMLE--GLGTQFEKEGLLDKY--RKP-RLNAAYMEGWSSLTKKL 504
FDE LQ + R + L G ++ GL + R P L A E L+ L
Sbjct: 244 FDEAVGLQWALVARRHGELSESGPSAAWKSNGLAAELLRRLPFELTAGQREVLDVLSDGL 303
Query: 505 LRALPYS-LTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQA 563
P + L ++ + I+ L M +++ C A LA EV+ + +
Sbjct: 304 AANRPLNRLLQGEVGSGKTIVAVLA----MLQMVDAGYQC-----ALLAPTEVLAAQHLR 354
Query: 564 AFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLV 623
+ ++L L + + ++ ++ALLTGS Q + +R ++ +G + +V
Sbjct: 355 SIR---DVLGP------LAMGGQLGGAENATRVALLTGSMTAGQKKQVRAEIASGQVGIV 405
Query: 624 IGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSK 661
IGTH+L+ E V+F L + +VDEQ RFGV QR + +K
Sbjct: 406 IGTHALLQEAVDFHNLGMVVVDEQHRFGVEQRDQLRAK 443
>TIGR_CMR|BA_3993 [details] [associations]
symbol:BA_3993 "ATP-dependent DNA helicase RecG"
species:198094 "Bacillus anthracis str. Ames" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006268
"DNA unwinding involved in replication" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0006310 "DNA recombination"
evidence=ISS] [GO:0009378 "four-way junction helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR004609
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0006281 GO:GO:0003676 GO:GO:0006310
GO:GO:0004003 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K03655
ProtClustDB:PRK10917 TIGRFAMs:TIGR00643 HOGENOM:HOG000036619
OMA:ETYWVKH HSSP:Q9WY48 RefSeq:NP_846235.1 RefSeq:YP_022668.1
RefSeq:YP_029957.1 ProteinModelPortal:Q81WI3 DNASU:1086614
EnsemblBacteria:EBBACT00000008516 EnsemblBacteria:EBBACT00000016998
EnsemblBacteria:EBBACT00000021314 GeneID:1086614 GeneID:2819857
GeneID:2849256 KEGG:ban:BA_3993 KEGG:bar:GBAA_3993 KEGG:bat:BAS3706
BioCyc:BANT260799:GJAJ-3764-MONOMER
BioCyc:BANT261594:GJ7F-3881-MONOMER Uniprot:Q81WI3
Length = 682
Score = 381 (139.2 bits), Expect = 2.8e-42, Sum P(3) = 2.8e-42
Identities = 99/273 (36%), Positives = 146/273 (53%)
Query: 384 PIYPSKGGLNASLLRDTIARALQALPANF-DPVPKEITQEFGLLCLFDAYMGIHQPKHID 442
P+Y KG L +R IA+AL+ + + +P + + LL ++A +H P +
Sbjct: 143 PVYSVKGKLTVKQMRRFIAQALKEYGDSIVEVLPDGLLSRYKLLPRYEALRALHFPTGQE 202
Query: 443 EADLARKRLIFDEFFYLQLGRLYQMLEGLGTQFEKEGLLDKYRKPRLNAAYMEGWSSLTK 502
+ AR+R +++EFF QL Q L + E+E K K + + ++
Sbjct: 203 DLKQARRRFVYEEFFLFQLKM--QTLR----KMEREN--SKGTKKEIPSEELQ------- 247
Query: 503 KLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQ 562
+ + ALP+ LT +Q + EI+ D+ P MNRLLQGDVG GKTVVA + + YQ
Sbjct: 248 EFIDALPFPLTGAQRRVVDEIMKDMTSPYRMNRLLQGDVGSGKTVVAAIGLYAAKLAHYQ 307
Query: 563 AAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITL 622
A MVPTE+LA QHY+ L + + K+ LLT S + R I L+ G+I +
Sbjct: 308 GALMVPTEILAEQHYQSLAETFSHFGM-----KVELLTSSVKGVRRREILAKLEQGEIDI 362
Query: 623 VIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQR 655
++GTH+LI ++V F L L I DEQ RFGV QR
Sbjct: 363 LVGTHALIQDEVIFHRLGLVITDEQHRFGVAQR 395
Score = 116 (45.9 bits), Expect = 2.8e-42, Sum P(3) = 2.8e-42
Identities = 22/42 (52%), Positives = 32/42 (76%)
Query: 687 APHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTY 728
+P VL M+ATPIPRTLA+ +G+M ++ I ++P GR I+TY
Sbjct: 404 SPDVLFMTATPIPRTLAITAFGEMDVSIIDEMPAGRKVIETY 445
Score = 64 (27.6 bits), Expect = 2.8e-42, Sum P(3) = 2.8e-42
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 205 PLLDKCISCVPGLSKRLYHQLENCGFYTLRKLLHHFPRTYAD 246
P+ D + + G + L H++ G YT+ LL HFP Y D
Sbjct: 8 PVTD--VKGIGGETSELLHEM---GIYTVSHLLEHFPYRYED 44
>TIGR_CMR|ECH_0062 [details] [associations]
symbol:ECH_0062 "ATP-dependent DNA helicase RecG"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006268
"DNA unwinding involved in replication" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0006310 "DNA recombination"
evidence=ISS] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003676
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG1200 HOGENOM:HOG000036617 KO:K03655 RefSeq:YP_506893.1
ProteinModelPortal:Q2GI40 STRING:Q2GI40 GeneID:3928041
KEGG:ech:ECH_0062 PATRIC:20575691 OMA:YNLMGKF
ProtClustDB:CLSK749554 BioCyc:ECHA205920:GJNR-62-MONOMER
Uniprot:Q2GI40
Length = 679
Score = 321 (118.1 bits), Expect = 4.4e-39, Sum P(4) = 4.4e-39
Identities = 78/174 (44%), Positives = 104/174 (59%)
Query: 493 YMEGWSSLTKKL-----LRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTV 547
Y +G S ++K+L L LP+ LT Q IS+I M +LL GDVG GKTV
Sbjct: 236 YQQGVSIVSKQLYYNDILNKLPFKLTEGQKEVISQITKSQASENRMVKLLIGDVGSGKTV 295
Query: 548 VAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQ 607
VA A + VI +G Q AFM PTE+LA QHY + +L ++ D + LLT KQ
Sbjct: 296 VALFAILNVIENGGQVAFMAPTEILAEQHYRWIRAILSDISVD-----VELLTSKVRKKQ 350
Query: 608 SRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSK 661
+ I+K LQ G+ +VIGTH+L + V+F+ L L I+DEQQRFGV+QR R +K
Sbjct: 351 N--IKKKLQLGECNVVIGTHALFQDGVDFNNLNLIIIDEQQRFGVLQRMRLINK 402
Score = 111 (44.1 bits), Expect = 4.4e-39, Sum P(4) = 4.4e-39
Identities = 24/53 (45%), Positives = 35/53 (66%)
Query: 690 VLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNEKGYENVYK 742
VL M+ATPIPRTL +YGD+ ++ D P R+PI+T I+ E+ +E + K
Sbjct: 408 VLFMTATPIPRTLEQVVYGDIDCLRLKDKPHNRLPIQTSIVN-IERLFEVIAK 459
Score = 82 (33.9 bits), Expect = 4.4e-39, Sum P(4) = 4.4e-39
Identities = 31/136 (22%), Positives = 61/136 (44%)
Query: 326 SIPFLKSIEGKHKVGEFVCVSGKVRAMRSNNHYEMREYNIDVLKDEDDLSLRAKGRPYPI 385
S+ +L+S+ KVG VSG + +Y + +K D+S+ PI
Sbjct: 99 SLKYLRSVL---KVGSTCVVSGTLIRFLGCLQITHPDYIVTDIKKFQDISIIE-----PI 150
Query: 386 YPSKGGLNASLLRDTIARALQALPANFDPVPKEITQEFGLLCLFDAYMGIHQPKHIDEAD 445
YP GL + + + +++ LP + + +++ ++ ++ + IH P ++
Sbjct: 151 YPLIRGLTSKRISKLVKLSVRLLPDFPEWIDEKLLRDNRWNSWKESLIKIHHPDTLEAVH 210
Query: 446 LARKRLIFDEFFYLQL 461
L R RL +DE Q+
Sbjct: 211 LHRARLAYDELLSHQI 226
Score = 63 (27.2 bits), Expect = 4.4e-39, Sum P(4) = 4.4e-39
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 214 VPGLSKRLYHQLEN-CGFYTLRKLLHHFPRTYADLQNAQIDLDDGQYFIFIGEI 266
+PG++ + L+ CG + LL H P++Y D + A + G+ FIG +
Sbjct: 13 LPGVNNVVGSLLKKLCGGDKIIDLLFHIPQSYVDRRTALSEDSVGKIVTFIGTV 66
>TIGR_CMR|CBU_0305 [details] [associations]
symbol:CBU_0305 "ATP-dependent DNA helicase RecG"
species:227377 "Coxiella burnetii RSA 493" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR004365 InterPro:IPR004609 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF01336 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006281 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0006310 GO:GO:0004003
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000036617 KO:K03655 OMA:DRTRITP ProtClustDB:PRK10917
TIGRFAMs:TIGR00643 HSSP:Q9WY48 RefSeq:NP_819348.1
ProteinModelPortal:Q83EL4 PRIDE:Q83EL4 GeneID:1208187
KEGG:cbu:CBU_0305 PATRIC:17929305
BioCyc:CBUR227377:GJ7S-312-MONOMER Uniprot:Q83EL4
Length = 704
Score = 356 (130.4 bits), Expect = 5.1e-39, Sum P(3) = 5.1e-39
Identities = 115/326 (35%), Positives = 164/326 (50%)
Query: 338 KVGEFVCVSGKVRAMRSNNHYEM--REYNIDVLKDEDDLSLRAKGRPYPIYPSKGGLNAS 395
K+G V G VR EM EY I DE L + R PIYP+ GL+ +
Sbjct: 118 KMGLRVRCFGNVRR-NYQGRMEMIHPEYRI---VDEST-PLIPEDRLTPIYPTTKGLSQT 172
Query: 396 LLRDTIARALQALP-ANF--DPVPKEITQEFGLLCLFDAYMGIHQPKHIDEADL--ARKR 450
R I ++L L NF + +P++I L L +A +H P H DL A K
Sbjct: 173 KWRHLINQSLNYLKDPNFVEELLPEKIRTPLRLPTLTEALFYVHSPPHNAPVDLLQASKH 232
Query: 451 LIFDEFFYLQLGRLYQMLEGLGTQFEKEGLLDKYRKPRLNAAYMEGWSSLTKKLLRALPY 510
+ +L + + LG Q + L+ P L W +KL RAL +
Sbjct: 233 PSQQRLAFEEL-----VAQQLGLQ-QWRLLIRTQPAPIL---IKNNWQ---EKLKRALTF 280
Query: 511 SLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTE 570
LTS+Q I EI DL +P PM RLLQGDVG GKT+VA +A ++ + +GYQ+A M PTE
Sbjct: 281 ELTSAQKRVIGEINQDLSKPKPMLRLLQGDVGSGKTIVAAMAILKAVENGYQSAIMAPTE 340
Query: 571 LLATQHYEHLLKLLDNMEEDKHKPKIALLTGS-TPVKQSRMIRKDLQTGDITLVIGTHSL 629
LLA QHY+ + + ++ L GS TP + + ++ ++ +G ++++IGTH+L
Sbjct: 341 LLAEQHYQVFQRWFSPLGI-----RVGWLAGSLTPSAREKTLQ-EIASGQLSVIIGTHAL 394
Query: 630 IAEKVEFSALRLAIVDEQQRFGVVQR 655
V F L ++DEQ RFGV QR
Sbjct: 395 FQAAVTFQQLAFIVIDEQHRFGVHQR 420
Score = 130 (50.8 bits), Expect = 5.1e-39, Sum P(3) = 5.1e-39
Identities = 27/57 (47%), Positives = 36/57 (63%)
Query: 688 PHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGN--EKGYENVYK 742
PH L M+ATPIPRTLA+ Y D+ + I + PPGR PI T +I + +K E + K
Sbjct: 433 PHQLIMTATPIPRTLAMTAYADLDFSIIDEQPPGRKPITTVLISNSRRDKVIERIKK 489
Score = 49 (22.3 bits), Expect = 5.1e-39, Sum P(3) = 5.1e-39
Identities = 9/22 (40%), Positives = 12/22 (54%)
Query: 225 LENCGFYTLRKLLHHFPRTYAD 246
L N +T++ LL H P Y D
Sbjct: 35 LANLNIHTIQDLLFHLPSRYQD 56
>TIGR_CMR|SPO_1681 [details] [associations]
symbol:SPO_1681 "ATP-dependent DNA helicase RecG"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0004003 "ATP-dependent
DNA helicase activity" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] InterPro:IPR001650 InterPro:IPR004609
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0006281 GO:GO:0003676 GO:GO:0006310 GO:GO:0004003
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000036617 KO:K03655 ProtClustDB:PRK10917
TIGRFAMs:TIGR00643 RefSeq:YP_166920.1 ProteinModelPortal:Q5LST5
GeneID:3193560 KEGG:sil:SPO1681 PATRIC:23376687 OMA:EHPSLCL
Uniprot:Q5LST5
Length = 696
Score = 360 (131.8 bits), Expect = 5.6e-39, Sum P(2) = 5.6e-39
Identities = 102/275 (37%), Positives = 140/275 (50%)
Query: 384 PIYPSKGGLNASLLRDTIARALQALPANFDPVPKEITQEFGLLCLFDAYMGIHQPKHIDE 443
P+YP G++ AL LP D + + G DA H P+ +D+
Sbjct: 153 PVYPLTQGVSQRTAFKAARSALARLPDLADWIDPALRAREGWPDWADAMRAAHAPQGLDD 212
Query: 444 ADL---ARKRLIFDEFFYLQLGRLYQMLEGLGTQFEKEGLLDKYRKPRLNAAYMEGWSSL 500
AR RL +DE F +Q+ L + E RK R ++ G +L
Sbjct: 213 VAATAPARMRLAYDELF------AHQLTLALARRRE--------RKARGISSVATG--AL 256
Query: 501 TKKLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSG 560
++L +LPY T++Q AI EI D+ P MNRLLQGDVG GKT+VAF+A + + +G
Sbjct: 257 QSRVLASLPYRPTNAQARAIEEIAADMAAPARMNRLLQGDVGAGKTLVAFMALLVAVEAG 316
Query: 561 YQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDI 620
Q M PTE+LA QH E L L + + LLTG + R L+ GDI
Sbjct: 317 GQGVMMAPTEILARQHLEGLRPLAEEAGV-----VLELLTGRDKGAERRAKLAALKKGDI 371
Query: 621 TLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQR 655
++++GTH++ VEF+ LRLAIVDEQ RFGV QR
Sbjct: 372 SILVGTHAVFQADVEFADLRLAIVDEQHRFGVRQR 406
Score = 133 (51.9 bits), Expect = 5.6e-39, Sum P(2) = 5.6e-39
Identities = 26/48 (54%), Positives = 36/48 (75%)
Query: 683 DQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYII 730
++ M VL M+ATPIPR+LALA YGDM ++ + + PPGR PI+T +I
Sbjct: 411 EKGMNADVLVMTATPIPRSLALAQYGDMDVSVLDEKPPGRKPIRTAVI 458
>TIGR_CMR|APH_1298 [details] [associations]
symbol:APH_1298 "ATP-dependent DNA helicase RecG"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006268
"DNA unwinding involved in replication" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0006310 "DNA recombination"
evidence=ISS] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000235 GenomeReviews:CP000235_GR
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG1200 HOGENOM:HOG000036617 KO:K03655 OMA:YLYERDE
ProtClustDB:CLSK749554 RefSeq:YP_505812.1 ProteinModelPortal:Q2GII9
STRING:Q2GII9 GeneID:3931022 KEGG:aph:APH_1298 PATRIC:20951392
BioCyc:APHA212042:GHPM-1300-MONOMER Uniprot:Q2GII9
Length = 702
Score = 308 (113.5 bits), Expect = 5.3e-38, Sum P(4) = 5.3e-38
Identities = 74/160 (46%), Positives = 97/160 (60%)
Query: 502 KKLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGY 561
+++L+ L + LT+ Q SAI EI M +LLQGDVG GKTVVA A + + S
Sbjct: 276 QEVLKRLGFELTAGQKSAIREITRAQTSDQQMAKLLQGDVGSGKTVVALFAMLNTVESSG 335
Query: 562 QAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDIT 621
Q A MVPTE+LA QH + KLL+ M+ I LLTG T K I L +G+I
Sbjct: 336 QVAVMVPTEMLAEQHCSWIKKLLEGMDIC-----IELLTGKT--KNKNTIHARLLSGEIH 388
Query: 622 LVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSK 661
++IGTH+L E V+F LRL ++DEQQRFGV+QR + K
Sbjct: 389 ILIGTHALFQESVKFHNLRLVVIDEQQRFGVLQRMKLIEK 428
Score = 104 (41.7 bits), Expect = 5.3e-38, Sum P(4) = 5.3e-38
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 690 VLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIE 731
+L ++ATPIPRTL LYG+M + D P R+P+KT I++
Sbjct: 434 ILFITATPIPRTLEQILYGNMDRITLKDKPACRLPVKTSIVK 475
Score = 104 (41.7 bits), Expect = 5.3e-38, Sum P(4) = 5.3e-38
Identities = 41/184 (22%), Positives = 79/184 (42%)
Query: 326 SIPFLKSIEGKHKVGEFVCVSGKVRAMRSNNHYEMREYNIDVLKDEDDLSLRAKGRPYPI 385
S P+L+S+ +VG+ VSGK+ +Y + LK ++ P+
Sbjct: 125 SQPYLESVL---EVGKQCLVSGKLEIHCGEMQITHPDYCTNNLKKFTEICALE-----PV 176
Query: 386 YPSKGGLNASLLRDTIARALQALPANFDPVPKEITQEFGLLCLFDAYMGIHQPKHIDEAD 445
Y GL++ ++ I AL+++ A + +P ++ +E L ++ +H P++++E
Sbjct: 177 YSVTKGLHSRVIHKLIKVALKSIQAQHEWLPADLIEENSWLSWQESVYKMHTPENVEEVR 236
Query: 446 LARKRLIFDEFFYLQLGRLYQMLEGL--GTQFEKEGLLDKYRKPRLNAAYMEGWSSLTKK 503
+ RL +DE + G G E +G + RL G S ++
Sbjct: 237 RIKGRLAYDELMAYHAAVYFARQHGRRKGVALEVKGTNYQEVLKRLGFELTAGQKSAIRE 296
Query: 504 LLRA 507
+ RA
Sbjct: 297 ITRA 300
Score = 54 (24.1 bits), Expect = 5.3e-38, Sum P(4) = 5.3e-38
Identities = 19/68 (27%), Positives = 31/68 (45%)
Query: 186 NESSTSSEVGSLPSEASIEPLLDKCISCVPGLSKRLYHQLEN-CGFYTLRKLLHHFPRTY 244
+ SS S+ VG + P + I + G+ LE CG + LL + P +Y
Sbjct: 7 SSSSPSNRVGKTAKLPEV-PGMFSSIYDIQGVDNEKGLLLEKLCGGSRIVDLLLYAPYSY 65
Query: 245 ADLQNAQI 252
D +N+Q+
Sbjct: 66 VDRRNSQL 73
>UNIPROTKB|P24230 [details] [associations]
symbol:recG "RecG DNA helicase" species:83333 "Escherichia
coli K-12" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0032508 "DNA duplex
unwinding" evidence=IDA] [GO:0009379 "Holliday junction helicase
complex" evidence=IDA] [GO:0006974 "response to DNA damage
stimulus" evidence=IEA] [GO:0006310 "DNA recombination"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=IEA;IDA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR004365 InterPro:IPR004609 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF01336 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
GO:GO:0006281 GO:GO:0006310 GO:GO:0004003 EMBL:L10328
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:M64367
EMBL:X59550 PIR:JH0265 RefSeq:NP_418109.1 RefSeq:YP_491782.1
ProteinModelPortal:P24230 SMR:P24230 DIP:DIP-10653N IntAct:P24230
MINT:MINT-1301344 PRIDE:P24230 EnsemblBacteria:EBESCT00000001039
EnsemblBacteria:EBESCT00000014226 GeneID:12933935 GeneID:948162
KEGG:ecj:Y75_p3522 KEGG:eco:b3652 PATRIC:32122791 EchoBASE:EB0822
EcoGene:EG10829 eggNOG:COG1200 HOGENOM:HOG000036617 KO:K03655
OMA:DRTRITP ProtClustDB:PRK10917 BioCyc:EcoCyc:EG10829-MONOMER
BioCyc:ECOL316407:JW3627-MONOMER Genevestigator:P24230
GO:GO:0009379 TIGRFAMs:TIGR00643 Uniprot:P24230
Length = 693
Score = 329 (120.9 bits), Expect = 1.1e-37, Sum P(3) = 1.1e-37
Identities = 97/282 (34%), Positives = 148/282 (52%)
Query: 384 PIYPSKGGLNASLLRDTIARALQALP--ANFDPVPKEITQEFGLLCLFDAYMGIHQPKH- 440
P+YP+ G+ + LR +AL L A + +P E++Q G++ L +A +H+P
Sbjct: 150 PVYPTTEGVKQATLRKLTDQALDLLDTCAIEELLPPELSQ--GMMTLPEALRTLHRPPPT 207
Query: 441 IDEADL------ARKRLIFDEFFYLQLGRLYQMLEGLGTQFEKEGLLDKYRKPRLNAAYM 494
+ +DL A++RLI +E L L L G Q R +A +
Sbjct: 208 LQLSDLETGQHPAQRRLILEELLAHNLSML--ALRA-GAQ-------------RFHAQPL 251
Query: 495 EGWSSLTKKLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACM 554
+L KLL ALP+ T +Q ++EI D+ VPM RL+QGDVG GKT+VA LA +
Sbjct: 252 SANDTLKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGDVGSGKTLVAALAAL 311
Query: 555 EVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKD 614
I G Q A M PTELLA QH + + + + L G K +R+ +++
Sbjct: 312 RAIAHGKQVALMAPTELLAEQHANNFRNWFAPLGIE-----VGWLAGKQKGK-ARLAQQE 365
Query: 615 -LQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQR 655
+ +G + +++GTH++ E+V+F+ L L I+DEQ RFGV QR
Sbjct: 366 AIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQR 407
Score = 131 (51.2 bits), Expect = 1.1e-37, Sum P(3) = 1.1e-37
Identities = 25/47 (53%), Positives = 31/47 (65%)
Query: 684 QHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYII 730
Q PH L M+ATPIPRTLA+ Y D+ + I +LPPGR P+ T I
Sbjct: 417 QGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAI 463
Score = 65 (27.9 bits), Expect = 1.1e-37, Sum P(3) = 1.1e-37
Identities = 25/90 (27%), Positives = 43/90 (47%)
Query: 206 LLDKC-ISCVPGLSKRLYHQLENCGFYTLRKLLHHFPRTYADLQNAQI--DLDDGQYFIF 262
LLD +S + G+ L ++L +T++ LL H P Y D + +L G Y
Sbjct: 5 LLDAVPLSSLTGVGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATV 64
Query: 263 IGEIISSRGMKAGCSFSFL-EVIVGCEIAD 291
GE+++ C+ SF ++ C+I+D
Sbjct: 65 EGEVLN-------CNISFGGRRMMTCQISD 87
>UNIPROTKB|Q9KNM1 [details] [associations]
symbol:VC_2711 "ATP-dependent DNA helicase RecG"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004003 "ATP-dependent DNA helicase activity" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006310 "DNA
recombination" evidence=ISS] [GO:0009378 "four-way junction
helicase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR004365 InterPro:IPR004609 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF01336 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0006281 GO:GO:0003676 GO:GO:0006310 GO:GO:0004003
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009378
KO:K03655 OMA:DRTRITP ProtClustDB:PRK10917 TIGRFAMs:TIGR00643
HSSP:Q9WY48 PIR:H82041 RefSeq:NP_232338.1 ProteinModelPortal:Q9KNM1
DNASU:2615539 GeneID:2615539 KEGG:vch:VC2711 PATRIC:20084440
Uniprot:Q9KNM1
Length = 692
Score = 317 (116.6 bits), Expect = 1.7e-36, Sum P(3) = 1.7e-36
Identities = 116/373 (31%), Positives = 178/373 (47%)
Query: 299 EVVNIDS--GQKKKIYLHLKKFFRGT---RFTSIPFLKSIEGKHKVGEFVCVSGKVRAMR 353
+V+ +D+ G++K + + + GT RF + F +++ G+FV G+++ R
Sbjct: 66 KVMAVDTLFGKRKMLTVKISDG-NGTLTLRFFN--FTAAMKNNFAEGKFVHAYGEIK--R 120
Query: 354 SNNHYEM--REYNIDVLKDEDDLSLRAKGRPYPIYPSKGGLNASLLRDTIARALQALPAN 411
N E+ +Y D+ P+YP+ GL LR+ +AL L
Sbjct: 121 GNQGLEIIHPDYKFFTPAQTPDVEPNLT----PVYPTTEGLRQLTLRNLTDQALVLLE-- 174
Query: 412 FDPVPKEITQEFGLLCLFDAYMGIHQPK---HIDEADLARKRLIFDEFFYLQLGRLYQML 468
K QE L+D M + Q H AD+ + +F++ + RL ++
Sbjct: 175 -----KSAVQELLPSGLYDQQMTLAQALKIIHRPSADIDLR--LFEQGRHPAQIRL--IM 225
Query: 469 EGLGTQFEKEGLLDKYRKPRLNAAYMEGWSSLTKKLLRALPYSLTSSQLSAISEIIWDLK 528
E L Q L + + + A + L ++LL LP+S T +Q ++EI DL
Sbjct: 226 EELLAQ-NLSMLAIRSQGQQDVALPLAPVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLA 284
Query: 529 QPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNME 588
+P PM RL+QGDVG GKT+VA LA + I GYQ A M PTELLA QH + + L+ M
Sbjct: 285 KPHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHALNFAQWLEPMG 344
Query: 589 EDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQ 648
++ L G K + +G++ +V+GTH+L E+V F L L I+DEQ
Sbjct: 345 I-----QVGWLAGKLKGKARETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQH 399
Query: 649 RFGVVQRGRFNSK 661
RFGV QR K
Sbjct: 400 RFGVHQRLELREK 412
Score = 134 (52.2 bits), Expect = 1.7e-36, Sum P(3) = 1.7e-36
Identities = 25/48 (52%), Positives = 33/48 (68%)
Query: 688 PHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNEK 735
PH L M+ATPIPRTLA+ Y D+ + I +LPPGR PI+T I ++
Sbjct: 420 PHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKR 467
Score = 64 (27.6 bits), Expect = 1.7e-36, Sum P(3) = 1.7e-36
Identities = 17/69 (24%), Positives = 33/69 (47%)
Query: 207 LDKCISCVP-----GLSKRLYHQLENCGFYTLRKLLHHFPRTYADLQNAQ--IDLDDGQY 259
+ + +S VP G+ ++ +LE G +T++ LL H P Y D + L G +
Sbjct: 1 MSQLLSAVPLCELSGVGAKVAEKLEKVGLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLW 60
Query: 260 FIFIGEIIS 268
G++++
Sbjct: 61 AAVQGKVMA 69
>TIGR_CMR|VC_2711 [details] [associations]
symbol:VC_2711 "ATP-dependent DNA helicase RecG"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0006310 "DNA recombination"
evidence=ISS] [GO:0009378 "four-way junction helicase activity"
evidence=ISS] InterPro:IPR001650 InterPro:IPR004365
InterPro:IPR004609 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF01336 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0003676
GO:GO:0006310 GO:GO:0004003 Gene3D:2.40.50.140 InterPro:IPR012340
SUPFAM:SSF50249 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0009378 KO:K03655 OMA:DRTRITP ProtClustDB:PRK10917
TIGRFAMs:TIGR00643 HSSP:Q9WY48 PIR:H82041 RefSeq:NP_232338.1
ProteinModelPortal:Q9KNM1 DNASU:2615539 GeneID:2615539
KEGG:vch:VC2711 PATRIC:20084440 Uniprot:Q9KNM1
Length = 692
Score = 317 (116.6 bits), Expect = 1.7e-36, Sum P(3) = 1.7e-36
Identities = 116/373 (31%), Positives = 178/373 (47%)
Query: 299 EVVNIDS--GQKKKIYLHLKKFFRGT---RFTSIPFLKSIEGKHKVGEFVCVSGKVRAMR 353
+V+ +D+ G++K + + + GT RF + F +++ G+FV G+++ R
Sbjct: 66 KVMAVDTLFGKRKMLTVKISDG-NGTLTLRFFN--FTAAMKNNFAEGKFVHAYGEIK--R 120
Query: 354 SNNHYEM--REYNIDVLKDEDDLSLRAKGRPYPIYPSKGGLNASLLRDTIARALQALPAN 411
N E+ +Y D+ P+YP+ GL LR+ +AL L
Sbjct: 121 GNQGLEIIHPDYKFFTPAQTPDVEPNLT----PVYPTTEGLRQLTLRNLTDQALVLLE-- 174
Query: 412 FDPVPKEITQEFGLLCLFDAYMGIHQPK---HIDEADLARKRLIFDEFFYLQLGRLYQML 468
K QE L+D M + Q H AD+ + +F++ + RL ++
Sbjct: 175 -----KSAVQELLPSGLYDQQMTLAQALKIIHRPSADIDLR--LFEQGRHPAQIRL--IM 225
Query: 469 EGLGTQFEKEGLLDKYRKPRLNAAYMEGWSSLTKKLLRALPYSLTSSQLSAISEIIWDLK 528
E L Q L + + + A + L ++LL LP+S T +Q ++EI DL
Sbjct: 226 EELLAQ-NLSMLAIRSQGQQDVALPLAPVHQLKQQLLAQLPFSPTKAQQRVVAEIEADLA 284
Query: 529 QPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNME 588
+P PM RL+QGDVG GKT+VA LA + I GYQ A M PTELLA QH + + L+ M
Sbjct: 285 KPHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQVALMAPTELLAEQHALNFAQWLEPMG 344
Query: 589 EDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQ 648
++ L G K + +G++ +V+GTH+L E+V F L L I+DEQ
Sbjct: 345 I-----QVGWLAGKLKGKARETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQH 399
Query: 649 RFGVVQRGRFNSK 661
RFGV QR K
Sbjct: 400 RFGVHQRLELREK 412
Score = 134 (52.2 bits), Expect = 1.7e-36, Sum P(3) = 1.7e-36
Identities = 25/48 (52%), Positives = 33/48 (68%)
Query: 688 PHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNEK 735
PH L M+ATPIPRTLA+ Y D+ + I +LPPGR PI+T I ++
Sbjct: 420 PHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKR 467
Score = 64 (27.6 bits), Expect = 1.7e-36, Sum P(3) = 1.7e-36
Identities = 17/69 (24%), Positives = 33/69 (47%)
Query: 207 LDKCISCVP-----GLSKRLYHQLENCGFYTLRKLLHHFPRTYADLQNAQ--IDLDDGQY 259
+ + +S VP G+ ++ +LE G +T++ LL H P Y D + L G +
Sbjct: 1 MSQLLSAVPLCELSGVGAKVAEKLEKVGLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLW 60
Query: 260 FIFIGEIIS 268
G++++
Sbjct: 61 AAVQGKVMA 69
>TIGR_CMR|SO_4364 [details] [associations]
symbol:SO_4364 "ATP-dependent DNA helicase RecG"
species:211586 "Shewanella oneidensis MR-1" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR004365 InterPro:IPR004609 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF01336 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006281 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0006310 GO:GO:0004003
Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
HOGENOM:HOG000036617 KO:K03655 OMA:DRTRITP ProtClustDB:PRK10917
TIGRFAMs:TIGR00643 HSSP:Q9WY48 RefSeq:NP_719888.2
ProteinModelPortal:Q8E9C0 GeneID:1171966 KEGG:son:SO_4364
PATRIC:23528383 Uniprot:Q8E9C0
Length = 691
Score = 316 (116.3 bits), Expect = 5.8e-36, Sum P(3) = 5.8e-36
Identities = 110/324 (33%), Positives = 160/324 (49%)
Query: 340 GEFVCVSGKVRAMRSNNHYEM--REYNIDVLKDEDDLSLRAKGRPYPIYPSKGGLN-ASL 396
G + G++R R N+ E+ EY I V ED + PIYP+ GL AS
Sbjct: 108 GLMIRAYGEIR--RGNHQAEIVHPEYKI-VYPGED---IHLSDTLTPIYPTTEGLKQASW 161
Query: 397 LRDTIARALQALPAN--FDPVPKEITQEFGLLCLFDAYMGIHQPKHIDEADLARKRLIFD 454
++ T +AL+ L + +P ++ + L A +H+P H A +++ FD
Sbjct: 162 IKLT-EQALELLEDGGLTELLPADLQPNN--MSLKQALQTLHRP-H---AGISQ----FD 210
Query: 455 EFFYLQLGR--LYQMLEGLGTQFEKEGLLDKYRKPRLNAAY-MEGWSSLTKKLLRALPYS 511
L+LG+ Q L +L ++ L+AA M L L +LP+
Sbjct: 211 ----LELGQHPAQQRLVQEELLAHNLSMLRLRQRSNLDAAVTMHATGQLLNPFLTSLPFK 266
Query: 512 LTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTEL 571
T +Q ++EI DL QP PM RL+QGDVG GKT+VA LA ++ I +GYQ A M PTEL
Sbjct: 267 PTGAQQRVVAEIGKDLAQPHPMMRLVQGDVGSGKTLVAALAALQAIENGYQVAMMAPTEL 326
Query: 572 LATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIA 631
LA QH + + + K+ L G K D+++G +VIGTH++
Sbjct: 327 LAEQHAANFAAWFEPLGL-----KVGWLAGKLKGKARAQSLADIESGAAQIVIGTHAIFQ 381
Query: 632 EKVEFSALRLAIVDEQQRFGVVQR 655
++V F L L I+DEQ RFGV QR
Sbjct: 382 QQVIFHKLALIIIDEQHRFGVHQR 405
Score = 132 (51.5 bits), Expect = 5.8e-36, Sum P(3) = 5.8e-36
Identities = 25/53 (47%), Positives = 34/53 (64%)
Query: 683 DQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNEK 735
+Q PH L M+ATPIPRTLA+ Y D+ + I +LPPGR P+ T I + +
Sbjct: 414 NQGFHPHQLIMTATPIPRTLAMTAYADLDTSIIDELPPGRTPVTTVAIPDSRR 466
Score = 62 (26.9 bits), Expect = 5.8e-36, Sum P(3) = 5.8e-36
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 211 ISCVPGLSKRLYHQLENCGFYTLRKLLHHFPRTYAD 246
I+ + G++KR+ +L G T++ LL H P Y D
Sbjct: 9 ITELKGVAKRVAEKLAKLGITTVQDLLFHLPLRYED 44
>UNIPROTKB|Q0C0Q6 [details] [associations]
symbol:HNE_1987 "Putative ATP-dependent DNA helicase recG"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006268
"DNA unwinding involved in replication" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0006310 "DNA recombination"
evidence=ISS] InterPro:IPR001650 InterPro:IPR004365
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF01336
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006281
GO:GO:0003676 GO:GO:0006310 GO:GO:0004003 Gene3D:2.40.50.140
InterPro:IPR012340 SUPFAM:SSF50249 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CP000158 GenomeReviews:CP000158_GR
GO:GO:0006268 eggNOG:COG1200 HOGENOM:HOG000036617 KO:K03655
RefSeq:YP_760687.1 ProteinModelPortal:Q0C0Q6 STRING:Q0C0Q6
GeneID:4288352 KEGG:hne:HNE_1987 PATRIC:32216817 OMA:YLYERDE
ProtClustDB:CLSK2531604 BioCyc:HNEP228405:GI69-2012-MONOMER
Uniprot:Q0C0Q6
Length = 692
Score = 317 (116.6 bits), Expect = 2.3e-33, Sum P(3) = 2.3e-33
Identities = 106/291 (36%), Positives = 140/291 (48%)
Query: 378 AKGRPYPIYPSKGGLNASLLRDTI-ARALQALPANFDPVPK----EITQEFGLLCLFDAY 432
AKG P L+A L + ALQAL D +P+ + + G +A
Sbjct: 142 AKGEAPPAVEPIYSLSAGLTNRRVHTLALQALSLVPDDLPEWADPHLVAQKGWPAFKEAL 201
Query: 433 MGIHQPKHIDEAD--LARKRLIFDEFFYLQLGRLYQMLEGLGTQFEKEGLLDKYRKPRLN 490
H PK DE LAR+RL +DE L R E + F L R+ R
Sbjct: 202 SWQHDPKVYDEDRFALARERLAYDE----ALAR-----E---SAF---ALAQAARRQR-P 245
Query: 491 AAYMEGWSSLTKKLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAF 550
A ++ S +L+ ALPY T +Q+ A ++I D+ + PM RLLQGDVG GKT+VA
Sbjct: 246 APIIKAPPSAVNRLIDALPYRPTGAQMRAAADISSDVARGYPMRRLLQGDVGAGKTLVAA 305
Query: 551 LACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRM 610
A +E +G+Q+AFM PTE+LA Q Y+ L LL + +A L+G
Sbjct: 306 FAAVEAAAAGFQSAFMAPTEVLARQQYDTLDALLSPLGYT-----VAALSGRDRGSAREA 360
Query: 611 IRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSK 661
L G I +V GTH+L E V F L L IVDEQ RFGV R + K
Sbjct: 361 TLMGLADGSIQIVAGTHALFQEAVNFRNLGLIIVDEQHRFGVSDRMKLAGK 411
Score = 131 (51.2 bits), Expect = 2.3e-33, Sum P(3) = 2.3e-33
Identities = 23/40 (57%), Positives = 33/40 (82%)
Query: 688 PHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKT 727
PH+L MSATPIPRTLA A++GD+ ++ + + PPGR P++T
Sbjct: 415 PHMLVMSATPIPRTLAQAVHGDLDVSILDEKPPGRKPVET 454
Score = 81 (33.6 bits), Expect = 3.3e-08, Sum P(2) = 3.3e-08
Identities = 36/150 (24%), Positives = 61/150 (40%)
Query: 314 HLKKFFRGTRFTSIPFLKS----IEGKHKVGEFVCVSGKVRAMRSNNHYEMREYNIDVLK 369
H + T F ++ + ++ ++ + +G VSG+V R ++ +D K
Sbjct: 84 HRVQLVDSTGFLTLSYFRADPRWMKSQFPIGATRIVSGRVEEYRGERQITHPDFVVDPAK 143
Query: 370 DEDDLSLRAKGRPYPIYPSKGGLNASLLRDTIARALQALPANFDPV--PKEITQEFGLLC 427
E ++ PIY GL + +AL +P + P + Q+ G
Sbjct: 144 GEAPPAVE------PIYSLSAGLTNRRVHTLALQALSLVPDDLPEWADPHLVAQK-GWPA 196
Query: 428 LFDAYMGIHQPKHIDEAD--LARKRLIFDE 455
+A H PK DE LAR+RL +DE
Sbjct: 197 FKEALSWQHDPKVYDEDRFALARERLAYDE 226
Score = 37 (18.1 bits), Expect = 2.3e-33, Sum P(3) = 2.3e-33
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 198 PSEASIEPLLDKCISCVPGLSKRLYHQL 225
P++ P ++ S GL+ R H L
Sbjct: 141 PAKGEAPPAVEPIYSLSAGLTNRRVHTL 168
>TIGR_CMR|CHY_0200 [details] [associations]
symbol:CHY_0200 "transcription-repair coupling factor"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003690 "double-stranded DNA binding" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR004576 InterPro:IPR005118 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF03461 PROSITE:PS51194
SMART:SM00490 SMART:SM00982 Pfam:PF02559 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003684 GO:GO:0006281
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR003711 SMART:SM01058 SUPFAM:SSF141259 eggNOG:COG1197
KO:K03723 TIGRFAMs:TIGR00580 HOGENOM:HOG000216591
RefSeq:YP_359072.1 ProteinModelPortal:Q3AFL2 STRING:Q3AFL2
GeneID:3728597 KEGG:chy:CHY_0200 PATRIC:21273579 OMA:ERINMYK
BioCyc:CHYD246194:GJCN-201-MONOMER Uniprot:Q3AFL2
Length = 1160
Score = 289 (106.8 bits), Expect = 2.6e-27, Sum P(2) = 2.6e-27
Identities = 70/181 (38%), Positives = 99/181 (54%)
Query: 478 EGLLDKYRKPRLNAAYMEGWSSL-TKKLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRL 536
EGLL+ Y K + ++ K+ PY T QL AI E+ D+++P M+RL
Sbjct: 586 EGLLELYAKRMAKPGFAFSPDTVWQKEFEERFPYEETPDQLKAIEEVKRDMEKPKVMDRL 645
Query: 537 LQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKI 596
L GDVG GKT VA A + + G Q A + PT LLA QHY + + +I
Sbjct: 646 LCGDVGYGKTEVALRAAFKAVMDGKQVAVLTPTTLLAQQHYNTFKERFSG-----YPVEI 700
Query: 597 ALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRG 656
LL+ ++ + I K+L+ G + +VIGTH L+ + V+F L L IVDE+QRFGV Q+
Sbjct: 701 RLLSRFQTAREQKEIIKELKRGKVDIVIGTHRLLQDDVQFYDLGLMIVDEEQRFGVAQKE 760
Query: 657 R 657
R
Sbjct: 761 R 761
Score = 106 (42.4 bits), Expect = 2.6e-27, Sum P(2) = 2.6e-27
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 690 VLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIE 731
VL ++ATPIPRTL +AL G L+ + P R P++TY++E
Sbjct: 771 VLTLTATPIPRTLHMALMGIRDLSVLNTPPENRFPVQTYVLE 812
>TIGR_CMR|DET_1281 [details] [associations]
symbol:DET_1281 "transcription-repair coupling factor"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
InterPro:IPR001650 InterPro:IPR004576 InterPro:IPR005118
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF03461
PROSITE:PS51194 SMART:SM00490 SMART:SM00982 Pfam:PF02559
GO:GO:0005524 GO:GO:0003684 GO:GO:0006281 EMBL:CP000027
GenomeReviews:CP000027_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR003711 SMART:SM01058
SUPFAM:SSF141259 eggNOG:COG1197 KO:K03723 TIGRFAMs:TIGR00580
HOGENOM:HOG000216591 RefSeq:YP_181993.1 ProteinModelPortal:Q3Z706
STRING:Q3Z706 GeneID:3229394 KEGG:det:DET1281 PATRIC:21609591
OMA:ITEHEIY ProtClustDB:CLSK2459055
BioCyc:DETH243164:GJNF-1282-MONOMER Uniprot:Q3Z706
Length = 1148
Score = 272 (100.8 bits), Expect = 3.0e-25, Sum P(2) = 3.0e-25
Identities = 69/185 (37%), Positives = 103/185 (55%)
Query: 480 LLDKYRKPRLNAAYMEGWSSLTKKLLRA-LPYSLTSSQLSAISEIIWDLKQPVPMNRLLQ 538
LLD Y K ++ + Y ++ ++ + A PY T QL A+ +I D++ P PM+RL+
Sbjct: 575 LLDIYAKRKMASGYPFSTDTVWQQEMEASFPYLETPDQLKALYDIKADMENPRPMDRLIL 634
Query: 539 GDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIAL 598
GDVG GKT VA A + + G Q A +VPT +LA QHY + L KI +
Sbjct: 635 GDVGYGKTEVAIRAAFKAVMDGKQVAVLVPTTVLAQQHYTTFRERLATFPV-----KIEV 689
Query: 599 LTG-STPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGR 657
L+ +P +Q + ++L+ G++ + IGTH LI + F L L I+DE+QRFGV +
Sbjct: 690 LSRFCSPSEQKTTV-ENLERGEVDICIGTHRLIQADITFKDLGLVIIDEEQRFGVAHK-E 747
Query: 658 FNSKL 662
F KL
Sbjct: 748 FFKKL 752
Score = 104 (41.7 bits), Expect = 3.0e-25, Sum P(2) = 3.0e-25
Identities = 26/49 (53%), Positives = 34/49 (69%)
Query: 690 VLAMSATPIPRTLALALYG--DMSLTQITDLPPG-RIPIKTYIIEGNEK 735
VL +SATPIPRTL ++L G DMS I + PPG R+PIKT + +E+
Sbjct: 758 VLTLSATPIPRTLHMSLVGVRDMS---IIETPPGERLPIKTVVAAFDER 803
>TIGR_CMR|NSE_0690 [details] [associations]
symbol:NSE_0690 "ATP-dependent DNA helicase RecG"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006268
"DNA unwinding involved in replication" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0006310 "DNA recombination"
evidence=ISS] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 Gene3D:2.40.50.140 InterPro:IPR012340 SUPFAM:SSF50249
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0008026 eggNOG:COG1200
HOGENOM:HOG000036617 KO:K03655 RefSeq:YP_506567.1
ProteinModelPortal:Q2GD79 STRING:Q2GD79 GeneID:3931634
KEGG:nse:NSE_0690 PATRIC:22681399 OMA:ATHAILA
ProtClustDB:CLSK2528120 BioCyc:NSEN222891:GHFU-703-MONOMER
Uniprot:Q2GD79
Length = 675
Score = 276 (102.2 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
Identities = 84/258 (32%), Positives = 128/258 (49%)
Query: 424 GLLCLFDAYMGIHQPKHIDEADLARKRLIFDEFFYLQLGRLYQMLEGLGTQFEKEGLLDK 483
GL+ A +H P E + A KRL +DE + L + L TQ +L++
Sbjct: 187 GLISWGKAIEQLHHPSSEVEFEQACKRLAYDEILAMHL-----VNNSLHTQ-----VLNQ 236
Query: 484 YRKPRLNAAYMEGWSSLTKKLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGC 543
++P ++G +T L LP+SLT Q I +I Q V M LLQGDVG
Sbjct: 237 KKEP------IKGDGRITALLRSRLPFSLTEGQEEVIKKIYALQGQDVRMVALLQGDVGS 290
Query: 544 GKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGST 603
GKT+V A + + G Q + PT +LA QH+E L KLL + KP LLTG
Sbjct: 291 GKTLVVIFAMLNAVEVGKQVVLLSPTIVLAKQHFEVLQKLLPEL-----KP--VLLTGEK 343
Query: 604 PVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLY 663
+D+++GD +++ TH+++A + F L L ++DEQ RFG QR +KL
Sbjct: 344 IACSREQFLQDIRSGDAKVIVATHAILAVGILFFDLGLLVIDEQHRFGANQR----TKLI 399
Query: 664 YTSMSSGMAMVNSDGSPK 681
+ + + +V++ P+
Sbjct: 400 RENPGADLVLVSATPIPR 417
Score = 77 (32.2 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 690 VLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKT 727
++ +SATPIPRT+ L+G ++L + + P R P+ T
Sbjct: 407 LVLVSATPIPRTIGQVLFGSITLLNLREKPKSR-PVVT 443
>TIGR_CMR|BA_0052 [details] [associations]
symbol:BA_0052 "transcription-repair coupling factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR004576 InterPro:IPR005118 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF03461 PROSITE:PS51194
SMART:SM00490 SMART:SM00982 Pfam:PF02559 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003684
GO:GO:0006281 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR003711 SMART:SM01058 SUPFAM:SSF141259
KO:K03723 TIGRFAMs:TIGR00580 HOGENOM:HOG000216591 OMA:ITEHEIY
RefSeq:NP_842621.1 RefSeq:YP_016655.1 RefSeq:YP_026339.1
HSSP:Q9WY48 ProteinModelPortal:Q81VY7 IntAct:Q81VY7 DNASU:1084914
EnsemblBacteria:EBBACT00000010195 EnsemblBacteria:EBBACT00000018477
EnsemblBacteria:EBBACT00000022406 GeneID:1084914 GeneID:2816263
GeneID:2851421 KEGG:ban:BA_0052 KEGG:bar:GBAA_0052 KEGG:bat:BAS0052
ProtClustDB:CLSK872606 BioCyc:BANT260799:GJAJ-59-MONOMER
BioCyc:BANT261594:GJ7F-61-MONOMER Uniprot:Q81VY7
Length = 1176
Score = 255 (94.8 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 60/149 (40%), Positives = 85/149 (57%)
Query: 507 ALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFM 566
+ PY T QL +I EI D+++ PM+RLL GDVG GKT VA A + I Q A +
Sbjct: 619 SFPYQETEDQLRSIEEIKKDMERGRPMDRLLCGDVGYGKTEVAIRAAFKAIMDEKQVAIL 678
Query: 567 VPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGT 626
VPT +LA QHYE + + + + I LL+ KQ K L+ G + +VIGT
Sbjct: 679 VPTTILAQQHYETIRERFQD-----YPINIGLLSRFRTRKQQNETIKGLKDGTVDIVIGT 733
Query: 627 HSLIAEKVEFSALRLAIVDEQQRFGVVQR 655
H ++++ V + L L I+DE+QRFGV +
Sbjct: 734 HRILSKDVTYKDLGLLIIDEEQRFGVTHK 762
Score = 106 (42.4 bits), Expect = 1.4e-23, Sum P(2) = 1.4e-23
Identities = 20/44 (45%), Positives = 30/44 (68%)
Query: 690 VLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGN 733
VL ++ATPIPRTL +++ G L+ I P R P++TY++E N
Sbjct: 774 VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYN 817
>TAIR|locus:2078673 [details] [associations]
symbol:AT3G02060 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003684
"damaged DNA binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006783 "heme biosynthetic process" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 Pfam:PF02559 GO:GO:0005524
EMBL:CP002686 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR003711 SMART:SM01058
SUPFAM:SSF141259 UniGene:At.18700 IPI:IPI00547719
RefSeq:NP_566160.1 ProteinModelPortal:F4JFJ3 SMR:F4JFJ3
PRIDE:F4JFJ3 EnsemblPlants:AT3G02060.1 GeneID:821294
KEGG:ath:AT3G02060 OMA:LAKQHYD ArrayExpress:F4JFJ3 Uniprot:F4JFJ3
Length = 823
Score = 242 (90.2 bits), Expect = 4.8e-23, Sum P(2) = 4.8e-23
Identities = 57/153 (37%), Positives = 88/153 (57%)
Query: 509 PYSLTSSQLSAISEIIWDL-KQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMV 567
PY+ T Q A ++ DL ++ PM+RL+ GDVG GKT VA A V+ +G QA +
Sbjct: 267 PYNATPDQKQAFLDVEKDLTERETPMDRLICGDVGFGKTEVALRAIFCVVSTGKQAMVLA 326
Query: 568 PTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTH 627
PT +LA QHY+ + + H K+ LL+ + + ++TG + +++GTH
Sbjct: 327 PTIVLAKQHYD---VISERFSLYPHI-KVGLLSRFQTKAEKEEYLEMIKTGHLNIIVGTH 382
Query: 628 SLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNS 660
SL+ +V +S L L +VDE+QRFGV Q+ + S
Sbjct: 383 SLLGSRVVYSNLGLLVVDEEQRFGVKQKEKIAS 415
Score = 110 (43.8 bits), Expect = 4.8e-23, Sum P(2) = 4.8e-23
Identities = 24/40 (60%), Positives = 29/40 (72%)
Query: 690 VLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYI 729
VL +SATPIPRTL LAL G + I+ PP RIPIKT++
Sbjct: 422 VLTLSATPIPRTLYLALTGFRDASLISTPPPERIPIKTHL 461
>TIGR_CMR|CBU_1148 [details] [associations]
symbol:CBU_1148 "transcription-repair coupling factor"
species:227377 "Coxiella burnetii RSA 493" [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR004576 InterPro:IPR005118 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF03461 PROSITE:PS51194
SMART:SM00490 SMART:SM00982 Pfam:PF02559 GO:GO:0005524
GO:GO:0003684 GO:GO:0006281 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR003711 SMART:SM01058 SUPFAM:SSF141259
HOGENOM:HOG000216592 KO:K03723 OMA:QAYAYLM TIGRFAMs:TIGR00580
HSSP:Q9WY48 RefSeq:NP_820146.1 ProteinModelPortal:Q83CG9
GeneID:1209050 KEGG:cbu:CBU_1148 PATRIC:17931027
ProtClustDB:CLSK914576 BioCyc:CBUR227377:GJ7S-1138-MONOMER
Uniprot:Q83CG9
Length = 1157
Score = 257 (95.5 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 65/182 (35%), Positives = 96/182 (52%)
Query: 480 LLDKYRKPRLNAAYMEGWSSLTKKLLR-ALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQ 538
LLD Y + + + L R A P+ T Q +AI+++I D+ M+RL+
Sbjct: 582 LLDIYSRRQAATGFTFSIPEKEYSLFRQAFPFEETPDQSAAINDVIVDMSSKRSMDRLIC 641
Query: 539 GDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIAL 598
GDVG GKT VA A + + Q A +VPT LLA QH+ + D + +IA
Sbjct: 642 GDVGFGKTEVAMQAAFIAVQNNKQVAVLVPTTLLAEQHFYNFQ---DRFAD--WPVRIAA 696
Query: 599 LTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRF 658
++ KQ + I ++L G I ++IGTH L+++ + F L L IVDE+ RFGV Q+ R
Sbjct: 697 ISRLRTQKQRQQITQELAEGKIDIIIGTHKLLSKDIRFKDLGLLIVDEEHRFGVTQKERI 756
Query: 659 NS 660
S
Sbjct: 757 KS 758
Score = 93 (37.8 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 18/40 (45%), Positives = 28/40 (70%)
Query: 690 VLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYI 729
+L ++ATPIPRTL ++L G L+ IT P R+ +KT++
Sbjct: 765 ILTLTATPIPRTLNMSLSGIRDLSLITTPPAKRLSVKTFV 804
>TIGR_CMR|GSU_0017 [details] [associations]
symbol:GSU_0017 "transcription-repair coupling factor"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR004576 InterPro:IPR005118 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF03461 PROSITE:PS51194
SMART:SM00490 SMART:SM00982 Pfam:PF02559 GO:GO:0005524
GO:GO:0003684 GO:GO:0006281 EMBL:AE017180 GenomeReviews:AE017180_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR003711 SMART:SM01058 SUPFAM:SSF141259 KO:K03723
OMA:QAYAYLM TIGRFAMs:TIGR00580 HOGENOM:HOG000216591
RefSeq:NP_951079.1 ProteinModelPortal:Q74H75 GeneID:2685756
KEGG:gsu:GSU0017 PATRIC:22022771 ProtClustDB:CLSK827589
BioCyc:GSUL243231:GH27-22-MONOMER Uniprot:Q74H75
Length = 1157
Score = 237 (88.5 bits), Expect = 6.3e-22, Sum P(4) = 6.3e-22
Identities = 62/179 (34%), Positives = 93/179 (51%)
Query: 478 EGLLDKYRKPRLNAAY-MEGWSSLTKKLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRL 536
E LL Y +L+ + L ++ + Y TS QL+AI ++I D+ PM+RL
Sbjct: 585 EELLRIYAARQLHEGHRFSPPDDLYREFEASFAYEETSDQLAAIEDVIADMTSNRPMDRL 644
Query: 537 LQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKI 596
+ GDVG GKT VA + + G Q A +VPT +LA QH E L + I
Sbjct: 645 VCGDVGYGKTEVAMRGAFKAVMDGKQVAVLVPTTVLAQQHLETFRARLG-----AYPVTI 699
Query: 597 ALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQR 655
+++ K+ + I + ++ G + ++IGTH L+ V F L L IVDE+QRFGV +
Sbjct: 700 EMVSRFRTPKEQKDILERVKKGTVDVIIGTHRLLQNDVTFKDLGLLIVDEEQRFGVTHK 758
Score = 92 (37.4 bits), Expect = 6.3e-22, Sum P(4) = 6.3e-22
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 687 APHVLAMSATPIPRTLALALYGDMSLTQITDLPP-GRIPIKTYIIEGNEK 735
A +L ++ATPIPRTL ++L G L+ I D PP R+ +KT++ +++
Sbjct: 767 AVDILTLTATPIPRTLYMSLMGIRDLS-IIDTPPVDRLAVKTFVARTSDE 815
Score = 59 (25.8 bits), Expect = 6.3e-22, Sum P(4) = 6.3e-22
Identities = 26/94 (27%), Positives = 43/94 (45%)
Query: 184 LPNESSTSSEVGSLP-SEASIEPLLDKCISCVPGLSKRLYHQLENCGFYTLRKLLHHFP- 241
+ E++ +V P SE + PL + + + + + L +LL H+P
Sbjct: 366 IATETNADLKVDISPDSEGVLRPLAARLTGWIEERQRVIIACHQRGQAQRLYELLAHYPV 425
Query: 242 -RTYADLQ-NAQIDLDDGQYFIFIGEIISSRGMK 273
T +D A+ + DDG+ I IGEI SRG +
Sbjct: 426 PLTVSDRPFPAERERDDGRVDIVIGEI--SRGFR 457
Score = 47 (21.6 bits), Expect = 6.3e-22, Sum P(4) = 6.3e-22
Identities = 17/46 (36%), Positives = 23/46 (50%)
Query: 149 LADQSCEAVVSNPMDAELRVDRFGLSEAWPSLYPALPNESSTSSEV 194
LAD+ AVV+ P RV L ++ SLY LP E S ++
Sbjct: 106 LADRRAAAVVTTPEALRQRVVPRSLLDS-ASLY-FLPGEESDRDDL 149
>TIGR_CMR|SO_2255 [details] [associations]
symbol:SO_2255 "transcription-repair coupling factor"
species:211586 "Shewanella oneidensis MR-1" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=ISS]
InterPro:IPR001650 InterPro:IPR004576 InterPro:IPR005118
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF03461
PROSITE:PS51194 SMART:SM00490 SMART:SM00982 Pfam:PF02559
GO:GO:0005524 GO:GO:0003684 GO:GO:0006281 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR003711 SMART:SM01058
SUPFAM:SSF141259 HOGENOM:HOG000216592 KO:K03723 OMA:QAYAYLM
TIGRFAMs:TIGR00580 HSSP:Q9WY48 RefSeq:NP_717851.1
ProteinModelPortal:Q8EEV8 GeneID:1169985 KEGG:son:SO_2255
PATRIC:23524129 ProtClustDB:CLSK906653 Uniprot:Q8EEV8
Length = 1164
Score = 250 (93.1 bits), Expect = 1.8e-21, Sum P(2) = 1.8e-21
Identities = 56/155 (36%), Positives = 84/155 (54%)
Query: 506 RALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAF 565
+ P+ T Q SAI ++ D++ P M+RL+ GDVG GKT VA A + G Q
Sbjct: 605 QGFPFEETVDQESAIHAVLADMQSPTAMDRLVCGDVGFGKTEVAMRAAFVAVNDGKQVVV 664
Query: 566 MVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIG 625
+VPT LLA QHYE+ D + I +++ K+ + K L+ G + +VIG
Sbjct: 665 LVPTTLLAQQHYENFK---DRFAD--WPVVIEVMSRFRTAKEQTQVLKQLEEGKVDIVIG 719
Query: 626 THSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNS 660
TH L+ + +F L L I+DE+ RFGV Q+ + +
Sbjct: 720 THKLLQSEAKFENLGLLIIDEEHRFGVRQKEKIKA 754
Score = 91 (37.1 bits), Expect = 1.8e-21, Sum P(2) = 1.8e-21
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 690 VLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGN 733
+L ++ATPIPRTL +A+ G L+ I P R+ +KT++ E +
Sbjct: 761 ILTLTATPIPRTLNMAMSGMRDLSIIATPPAKRLAVKTFVRESD 804
>UNIPROTKB|P64326 [details] [associations]
symbol:mfd "Transcription-repair-coupling factor"
species:1773 "Mycobacterium tuberculosis" [GO:0005829 "cytosol"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
InterPro:IPR001650 InterPro:IPR004576 InterPro:IPR005118
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF03461
PROSITE:PS51194 SMART:SM00490 SMART:SM00982 Pfam:PF02559
GO:GO:0005829 GO:GO:0005886 GO:GO:0005524 EMBL:BX842575
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
GO:GO:0003684 GO:GO:0006281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR003711 SMART:SM01058
SUPFAM:SSF141259 eggNOG:COG1197 KO:K03723 TIGRFAMs:TIGR00580
PIR:G70622 RefSeq:NP_215536.1 RefSeq:NP_335485.1
RefSeq:YP_006514381.1 ProteinModelPortal:P64326 SMR:P64326
IntAct:P64326 PRIDE:P64326 EnsemblBacteria:EBMYCT00000001215
EnsemblBacteria:EBMYCT00000069023 GeneID:13319583 GeneID:886077
GeneID:925151 KEGG:mtc:MT1048 KEGG:mtu:Rv1020 KEGG:mtv:RVBD_1020
PATRIC:18124052 TubercuList:Rv1020 HOGENOM:HOG000216591 OMA:DVFPPTE
ProtClustDB:CLSK871887 Uniprot:P64326
Length = 1234
Score = 244 (91.0 bits), Expect = 2.2e-21, Sum P(2) = 2.2e-21
Identities = 57/154 (37%), Positives = 85/154 (55%)
Query: 507 ALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFM 566
A ++ T QL+AI E+ D+++P+PM+R++ GDVG GKT +A A + + G Q A +
Sbjct: 644 AFGFTETVDQLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVL 703
Query: 567 VPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGT 626
VPT LLA QH + + + I L+ T +SR + L G + +VIGT
Sbjct: 704 VPTTLLADQHLQTFGERMSGFPVT-----IKGLSRFTDAAESRAVIDGLADGSVDIVIGT 758
Query: 627 HSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNS 660
H L+ V + L L +VDE+QRFGV + S
Sbjct: 759 HRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKS 792
Score = 97 (39.2 bits), Expect = 2.2e-21, Sum P(2) = 2.2e-21
Identities = 21/46 (45%), Positives = 29/46 (63%)
Query: 690 VLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNEK 735
VL MSATPIPRTL ++L G ++ I P R P+ TY+ ++K
Sbjct: 799 VLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDK 844
>UNIPROTKB|Q9KQW2 [details] [associations]
symbol:VC1886 "Transcription-repair coupling factor"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003690 "double-stranded DNA binding" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0006200 "ATP catabolic process"
evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS] [GO:0016887
"ATPase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR004576 InterPro:IPR005118 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF03461 PROSITE:PS51194
SMART:SM00490 SMART:SM00982 Pfam:PF02559 GO:GO:0005524
GO:GO:0003684 GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0016887
GO:GO:0003690 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR003711 SMART:SM01058 SUPFAM:SSF141259
KO:K03723 OMA:QAYAYLM TIGRFAMs:TIGR00580 HSSP:Q9WY48 EMBL:AE004264
PIR:E82144 RefSeq:NP_231520.1 ProteinModelPortal:Q9KQW2
DNASU:2613640 GeneID:2613640 KEGG:vch:VC1886 PATRIC:20082814
ProtClustDB:CLSK874583 Uniprot:Q9KQW2
Length = 1155
Score = 252 (93.8 bits), Expect = 5.7e-21, Sum P(3) = 5.7e-21
Identities = 60/177 (33%), Positives = 94/177 (53%)
Query: 480 LLDKYRKPRLNAAYMEGWSSLTKKLLRA-LPYSLTSSQLSAISEIIWDLKQPVPMNRLLQ 538
LLD Y K + + +A P+ T Q AI+ ++ D+ Q M+RL+
Sbjct: 573 LLDVYAKREIKPGFKFHLDREQYATFKATFPFEETDDQAMAINAVLSDMCQAKAMDRLVC 632
Query: 539 GDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIAL 598
GDVG GKT VA A +G Q A +VPT LLA QH+E+ N+ ++ +
Sbjct: 633 GDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFENFRDRFANLPI-----RVEV 687
Query: 599 LTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQR 655
L+ K+ + I +D+ G + +++GTH L++ ++ F+ L L IVDE+ RFGV Q+
Sbjct: 688 LSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLGLLIVDEEHRFGVRQK 744
Score = 90 (36.7 bits), Expect = 5.7e-21, Sum P(3) = 5.7e-21
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 690 VLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNE 734
+L ++ATPIPRTL +A+ G L+ I P R+ IKT++ + +
Sbjct: 756 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVRQSED 800
Score = 40 (19.1 bits), Expect = 5.7e-21, Sum P(3) = 5.7e-21
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 94 SLNDLFKYGRADKDAMDDFD 113
S+ DLF G +D +D FD
Sbjct: 169 SILDLFPMGSSDPFRIDFFD 188
>TIGR_CMR|VC_1886 [details] [associations]
symbol:VC_1886 "transcription-repair coupling factor"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR004576 InterPro:IPR005118 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF03461 PROSITE:PS51194
SMART:SM00490 SMART:SM00982 Pfam:PF02559 GO:GO:0005524
GO:GO:0003684 GenomeReviews:AE003852_GR GO:GO:0006281 GO:GO:0016887
GO:GO:0003690 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR003711 SMART:SM01058 SUPFAM:SSF141259
KO:K03723 OMA:QAYAYLM TIGRFAMs:TIGR00580 HSSP:Q9WY48 EMBL:AE004264
PIR:E82144 RefSeq:NP_231520.1 ProteinModelPortal:Q9KQW2
DNASU:2613640 GeneID:2613640 KEGG:vch:VC1886 PATRIC:20082814
ProtClustDB:CLSK874583 Uniprot:Q9KQW2
Length = 1155
Score = 252 (93.8 bits), Expect = 5.7e-21, Sum P(3) = 5.7e-21
Identities = 60/177 (33%), Positives = 94/177 (53%)
Query: 480 LLDKYRKPRLNAAYMEGWSSLTKKLLRA-LPYSLTSSQLSAISEIIWDLKQPVPMNRLLQ 538
LLD Y K + + +A P+ T Q AI+ ++ D+ Q M+RL+
Sbjct: 573 LLDVYAKREIKPGFKFHLDREQYATFKATFPFEETDDQAMAINAVLSDMCQAKAMDRLVC 632
Query: 539 GDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIAL 598
GDVG GKT VA A +G Q A +VPT LLA QH+E+ N+ ++ +
Sbjct: 633 GDVGFGKTEVAMRAAFVATDNGKQVAVLVPTTLLAQQHFENFRDRFANLPI-----RVEV 687
Query: 599 LTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQR 655
L+ K+ + I +D+ G + +++GTH L++ ++ F+ L L IVDE+ RFGV Q+
Sbjct: 688 LSRFKSAKEQKQILQDVADGKVDILVGTHKLLSSEIRFADLGLLIVDEEHRFGVRQK 744
Score = 90 (36.7 bits), Expect = 5.7e-21, Sum P(3) = 5.7e-21
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 690 VLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNE 734
+L ++ATPIPRTL +A+ G L+ I P R+ IKT++ + +
Sbjct: 756 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAIKTFVRQSED 800
Score = 40 (19.1 bits), Expect = 5.7e-21, Sum P(3) = 5.7e-21
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 94 SLNDLFKYGRADKDAMDDFD 113
S+ DLF G +D +D FD
Sbjct: 169 SILDLFPMGSSDPFRIDFFD 188
>TIGR_CMR|SPO_2074 [details] [associations]
symbol:SPO_2074 "transcription-repair coupling factor"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR004576 InterPro:IPR005118 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF03461 PROSITE:PS51194
SMART:SM00490 SMART:SM00982 Pfam:PF02559 GO:GO:0005524
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003684 GO:GO:0006281
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR003711 SMART:SM01058 SUPFAM:SSF141259
HOGENOM:HOG000216592 KO:K03723 OMA:QAYAYLM TIGRFAMs:TIGR00580
RefSeq:YP_167304.1 ProteinModelPortal:Q5LRQ1 GeneID:3193158
KEGG:sil:SPO2074 PATRIC:23377489 ProtClustDB:CLSK863099
Uniprot:Q5LRQ1
Length = 1142
Score = 241 (89.9 bits), Expect = 8.1e-21, Sum P(3) = 8.1e-21
Identities = 58/149 (38%), Positives = 81/149 (54%)
Query: 509 PYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVP 568
PY T QL AI +++ DL +PM+RL+ GDVG GKT VA A SG Q A + P
Sbjct: 586 PYQETDDQLRAIGDVMDDLHSGMPMDRLICGDVGFGKTEVAMRAAFVAAMSGLQVAVIAP 645
Query: 569 TELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHS 628
T LLA QH D ++ L+ K+++ R+ L G + +VIGTH+
Sbjct: 646 TTLLARQH---AASFRDRFRG--FPLEVRQLSRFISAKEAQQTREGLARGTVDIVIGTHA 700
Query: 629 LIAEKVEFSALRLAIVDEQQRFGVVQRGR 657
L+A+ + F L L I+DE+Q FGV + R
Sbjct: 701 LLAKGIRFQNLGLLIIDEEQHFGVGHKER 729
Score = 101 (40.6 bits), Expect = 8.1e-21, Sum P(3) = 8.1e-21
Identities = 22/43 (51%), Positives = 29/43 (67%)
Query: 689 HVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIE 731
HVL ++ATPIPRTL L+L G L+ I P R+ I+TY+ E
Sbjct: 738 HVLTLTATPIPRTLQLSLTGVRDLSIIGTPPIDRLAIRTYVSE 780
Score = 39 (18.8 bits), Expect = 8.1e-21, Sum P(3) = 8.1e-21
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 289 IADTET-TSGDEVVNIDSG 306
+ +T++ T GD VV++D G
Sbjct: 462 LTETQSLTPGDLVVHVDHG 480
>UNIPROTKB|P30958 [details] [associations]
symbol:mfd species:83333 "Escherichia coli K-12"
[GO:0006281 "DNA repair" evidence=IMP] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0006974 "response
to DNA damage stimulus" evidence=IDA] [GO:0000716
"transcription-coupled nucleotide-excision repair, DNA damage
recognition" evidence=IDA] [GO:0003684 "damaged DNA binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;IDA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR004576
InterPro:IPR005118 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF03461 PROSITE:PS51194 SMART:SM00490 SMART:SM00982
Pfam:PF02559 GO:GO:0005524 GO:GO:0006355 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
GO:GO:0003684 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR003711 SMART:SM01058 SUPFAM:SSF141259
PIR:G64855 RefSeq:NP_415632.1 RefSeq:YP_489382.1 PDB:2B2N PDB:2EYQ
PDB:3HJH PDB:4DFC PDBsum:2B2N PDBsum:2EYQ PDBsum:3HJH PDBsum:4DFC
ProteinModelPortal:P30958 SMR:P30958 DIP:DIP-10199N IntAct:P30958
MINT:MINT-1231460 PaxDb:P30958 PRIDE:P30958
EnsemblBacteria:EBESCT00000004999 EnsemblBacteria:EBESCT00000005000
EnsemblBacteria:EBESCT00000014442 GeneID:12931092 GeneID:945681
KEGG:ecj:Y75_p1084 KEGG:eco:b1114 PATRIC:32117471 EchoBASE:EB1576
EcoGene:EG11619 eggNOG:COG1197 HOGENOM:HOG000216592 KO:K03723
OMA:QAYAYLM ProtClustDB:PRK10689 BioCyc:EcoCyc:EG11619-MONOMER
BioCyc:ECOL316407:JW1100-MONOMER EvolutionaryTrace:P30958
Genevestigator:P30958 GO:GO:0009380 GO:GO:0000716
TIGRFAMs:TIGR00580 Uniprot:P30958
Length = 1148
Score = 244 (91.0 bits), Expect = 9.6e-21, Sum P(2) = 9.6e-21
Identities = 56/154 (36%), Positives = 84/154 (54%)
Query: 507 ALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFM 566
+ P+ T Q AI+ ++ D+ QP+ M+RL+ GDVG GKT VA A + + Q A +
Sbjct: 596 SFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVL 655
Query: 567 VPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGT 626
VPT LLA QHY++ N +I +++ K+ I ++ G I ++IGT
Sbjct: 656 VPTTLLAQQHYDNFRDRFANWPV-----RIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710
Query: 627 HSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNS 660
H L+ V+F L L IVDE+ RFGV + R +
Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKA 744
Score = 90 (36.7 bits), Expect = 9.6e-21, Sum P(2) = 9.6e-21
Identities = 18/42 (42%), Positives = 28/42 (66%)
Query: 690 VLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIE 731
+L ++ATPIPRTL +A+ G L+ I P R+ +KT++ E
Sbjct: 751 ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVRE 792
>TIGR_CMR|ECH_0250 [details] [associations]
symbol:ECH_0250 "transcription-repair coupling factor"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR004576 InterPro:IPR005118 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF03461 PROSITE:PS51194
SMART:SM00490 SMART:SM00982 Pfam:PF02559 GO:GO:0005524
EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003684 GO:GO:0006281
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR003711 SMART:SM01058 SUPFAM:SSF141259 eggNOG:COG1197
HOGENOM:HOG000216592 KO:K03723 TIGRFAMs:TIGR00580
RefSeq:YP_507071.1 ProteinModelPortal:Q2GHL2 STRING:Q2GHL2
GeneID:3927985 KEGG:ech:ECH_0250 PATRIC:20576019 OMA:DHININI
ProtClustDB:CLSK749334 BioCyc:ECHA205920:GJNR-250-MONOMER
Uniprot:Q2GHL2
Length = 1134
Score = 243 (90.6 bits), Expect = 1.2e-20, Sum P(3) = 1.2e-20
Identities = 55/154 (35%), Positives = 85/154 (55%)
Query: 502 KKLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGY 561
K Y+ T QL AI ++ DL MNRL+ GDVG GKT +A A V Y
Sbjct: 584 KHFCNEFSYTETEDQLQAIKDMEHDLSSGKIMNRLICGDVGFGKTEIALRAAFLVASQNY 643
Query: 562 QAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDIT 621
Q A +VPT LL QH+ + K K +++ + + +K+++ + L G +
Sbjct: 644 QVAIIVPTTLLCRQHFIVFTERFKKFPNIKIK-QLSKIVARSEIKKTK---ESLSCGQVH 699
Query: 622 LVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQR 655
++IGTH+++A+ V F+ L L I+DE+Q+FGV Q+
Sbjct: 700 IIIGTHAILAQDVTFANLSLLIIDEEQQFGVKQK 733
Score = 95 (38.5 bits), Expect = 1.2e-20, Sum P(3) = 1.2e-20
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 689 HVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTY 728
HV+++SATPIPRTL ++L G L+ I P R+ + TY
Sbjct: 744 HVISLSATPIPRTLYMSLCGIKDLSLIKTPPKNRLAVTTY 783
Score = 41 (19.5 bits), Expect = 1.2e-20, Sum P(3) = 1.2e-20
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 291 DTETTSGDEVVNIDSGQKKKIYLHLKKFF 319
DT GD V++ D G K + L K F
Sbjct: 469 DTNLDIGDIVIHKDYGIGKIVALETTKVF 497
>TIGR_CMR|APH_0107 [details] [associations]
symbol:APH_0107 "transcription-repair coupling factor"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0005524 "ATP
binding" evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS]
[GO:0016887 "ATPase activity" evidence=ISS] InterPro:IPR001650
InterPro:IPR004576 InterPro:IPR005118 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF03461 PROSITE:PS51194
SMART:SM00490 SMART:SM00982 Pfam:PF02559 GO:GO:0005524
GO:GO:0003684 GO:GO:0006281 EMBL:CP000235 GenomeReviews:CP000235_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR003711 SMART:SM01058 SUPFAM:SSF141259 eggNOG:COG1197
HOGENOM:HOG000216592 KO:K03723 TIGRFAMs:TIGR00580
ProtClustDB:CLSK749334 RefSeq:YP_504735.1 ProteinModelPortal:Q2GLL6
STRING:Q2GLL6 GeneID:3931221 KEGG:aph:APH_0107 PATRIC:20948776
OMA:VIIRDAL BioCyc:APHA212042:GHPM-142-MONOMER Uniprot:Q2GLL6
Length = 1139
Score = 246 (91.7 bits), Expect = 2.4e-20, Sum P(3) = 2.4e-20
Identities = 61/160 (38%), Positives = 91/160 (56%)
Query: 498 SSLTKKLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVI 557
SSL + PY T QL AI+++ DL + M+RL+ GDVG GKT +A A V+
Sbjct: 571 SSLYIDFCKECPYVETEDQLKAIADVENDLARGKVMDRLICGDVGFGKTEIALRAAFLVV 630
Query: 558 GSGY--QAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDL 615
Q A +VPT LL QH+ + N +K I L+ +T K+ + IR+ L
Sbjct: 631 NEDITCQVAVLVPTTLLCRQHFLAFKERFKN-----YKVNIQQLSKAT-AKKKQQIREGL 684
Query: 616 QTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQR 655
+ G I ++IGT +L+++ ++F LRL I+DE+Q FGV Q+
Sbjct: 685 EEGSINIIIGTSALLSDSIQFLDLRLLIIDEEQHFGVQQK 724
Score = 87 (35.7 bits), Expect = 2.4e-20, Sum P(3) = 2.4e-20
Identities = 20/47 (42%), Positives = 29/47 (61%)
Query: 689 HVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNEK 735
HVL++SATPIPRTL ++L L+ + P GR ++ I +EK
Sbjct: 735 HVLSLSATPIPRTLHMSLSNIKDLSILRTPPIGRTTVEISITHFDEK 781
Score = 43 (20.2 bits), Expect = 2.4e-20, Sum P(3) = 2.4e-20
Identities = 24/121 (19%), Positives = 52/121 (42%)
Query: 392 LNASLLRDTIARALQALPANFDPVPKEITQEFGLLCLFDAYMGIHQPKHIDEADLARKRL 451
L+ +AR + L FD P+ I Q + L + + + + + R
Sbjct: 309 LDLQSYEQVLARFHKILLCRFDSAPQSIVQNPATVALTKSTLALLPDLKLQARE--RGCN 366
Query: 452 IFDEFF-YLQLGRLYQMLEGLGTQFEKEGLLDKYRKPRLNAAYMEGWSSLTKKLLRA-LP 509
IF ++Q + Q+L ++ + L++K++ ++ + + +S +T K A LP
Sbjct: 367 IFSVTANHMQEAKK-QVLLACYSEESMQYLVEKFKHFDMHISRVSSFSDITSKYSTAILP 425
Query: 510 Y 510
+
Sbjct: 426 F 426
>TIGR_CMR|CJE_1228 [details] [associations]
symbol:CJE_1228 "transcription-repair coupling factor"
species:195099 "Campylobacter jejuni RM1221" [GO:0003690
"double-stranded DNA binding" evidence=ISS] [GO:0006281 "DNA
repair" evidence=ISS] [GO:0016887 "ATPase activity" evidence=ISS]
InterPro:IPR001650 InterPro:IPR005118 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF03461 PROSITE:PS51194
SMART:SM00490 SMART:SM00982 Pfam:PF02559 GO:GO:0005524
GO:GO:0003684 GO:GO:0006281 EMBL:CP000025 GenomeReviews:CP000025_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR003711 SMART:SM01058 SUPFAM:SSF141259 eggNOG:COG1197
KO:K03723 HOGENOM:HOG000216591 RefSeq:YP_179216.1
ProteinModelPortal:Q5HU19 STRING:Q5HU19 GeneID:3231735
KEGG:cjr:CJE1228 PATRIC:20044252 OMA:EDTQNIH ProtClustDB:CLSK872584
BioCyc:CJEJ195099:GJC0-1254-MONOMER Uniprot:Q5HU19
Length = 978
Score = 218 (81.8 bits), Expect = 9.1e-18, Sum P(3) = 9.1e-18
Identities = 58/143 (40%), Positives = 79/143 (55%)
Query: 513 TSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELL 572
TS Q A EI+ D + M+RLL GDVG GKT VA A V+ SG+ A PT LL
Sbjct: 469 TSDQDKACHEILQDFQSGKVMDRLLSGDVGFGKTEVAMNAIYPVVKSGFCAFLFAPTTLL 528
Query: 573 ATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAE 632
+ QHY+ L K D D K+ T S KQ + ++L+ +V+GTH+L++
Sbjct: 529 SHQHYKTLKKRFDPF--DIKVFKLDRFTSSAEKKQ---VLQNLKENKACVVVGTHALLS- 582
Query: 633 KVEFSALRLAIVDEQQRFGVVQR 655
VE L L I+DE+ +FGV Q+
Sbjct: 583 -VECENLALVIIDEEHKFGVKQK 604
Score = 90 (36.7 bits), Expect = 9.1e-18, Sum P(3) = 9.1e-18
Identities = 18/46 (39%), Positives = 30/46 (65%)
Query: 689 HVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNE 734
H+L+MSATPIPR+L AL S + + P R+ ++T++ E ++
Sbjct: 615 HILSMSATPIPRSLNQALSSIKSYSVLQTPPEDRMDVRTFVKENDD 660
Score = 42 (19.8 bits), Expect = 9.1e-18, Sum P(3) = 9.1e-18
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 90 MGYDSLNDLFKYGRADKDAMDDFDIS 115
+G+ ++D F Y D A + FDI+
Sbjct: 218 LGFWCIDDFFDYLELDFLACEKFDIN 243
Score = 39 (18.8 bits), Expect = 1.8e-17, Sum P(3) = 1.8e-17
Identities = 5/14 (35%), Positives = 13/14 (92%)
Query: 365 IDVLKDEDDLSLRA 378
+D+++D+ ++S+RA
Sbjct: 125 VDIVQDKGEISIRA 138
>TIGR_CMR|CJE_0514 [details] [associations]
symbol:CJE_0514 "ATP-dependent DNA helicase RecG"
species:195099 "Campylobacter jejuni RM1221" [GO:0004003
"ATP-dependent DNA helicase activity" evidence=ISS] [GO:0006310
"DNA recombination" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000025
GenomeReviews:CP000025_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG1200 KO:K03655
ProtClustDB:PRK10917 HOGENOM:HOG000036619 RefSeq:YP_178532.1
ProteinModelPortal:Q5HW03 STRING:Q5HW03 GeneID:3231275
KEGG:cjr:CJE0514 PATRIC:20042740 OMA:QALLYRE
BioCyc:CJEJ195099:GJC0-524-MONOMER Uniprot:Q5HW03
Length = 607
Score = 209 (78.6 bits), Expect = 5.8e-17, Sum P(2) = 5.8e-17
Identities = 58/156 (37%), Positives = 83/156 (53%)
Query: 505 LRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAA 564
L+ LP+SLT QL+A+ +I DL R++ GDVGCGKT+V A + V QA
Sbjct: 219 LKDLPFSLTKDQLNALKDIEKDLHSKEARRRVIMGDVGCGKTLVLLGAALMVYPK--QAI 276
Query: 565 FMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVI 624
M PT +LA Q YE K L + I + G K+ + + +++Q + L+I
Sbjct: 277 LMAPTSILAHQLYEEAKKFLPDFMN------ILFIKGG---KKEKDLEQNIQKAN--LII 325
Query: 625 GTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNS 660
GTH+LI +E L ++DEQ RFG QR + S
Sbjct: 326 GTHALI--HLESHNAVLVMIDEQHRFGSAQREKIYS 359
Score = 82 (33.9 bits), Expect = 5.8e-17, Sum P(2) = 5.8e-17
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 684 QHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNE 734
Q APH + SATPIPRTL++ ++ + I +P + I TY I+ NE
Sbjct: 363 QEFAPHFIQFSATPIPRTLSMIQSELLNFSFIKQMPFKK-DITTYCIQ-NE 411
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.137 0.403 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 742 742 0.00088 121 3 11 22 0.38 34
37 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 32
No. of states in DFA: 618 (66 KB)
Total size of DFA: 366 KB (2181 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 61.77u 0.16s 61.93t Elapsed: 00:00:03
Total cpu time: 61.78u 0.16s 61.94t Elapsed: 00:00:03
Start: Sat May 11 08:54:53 2013 End: Sat May 11 08:54:56 2013