BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045263
(742 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q55681|RECG_SYNY3 ATP-dependent DNA helicase RecG OS=Synechocystis sp. (strain PCC
6803 / Kazusa) GN=recG PE=3 SV=1
Length = 831
Score = 283 bits (724), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 190/541 (35%), Positives = 274/541 (50%), Gaps = 69/541 (12%)
Query: 198 PSEASIEPLLDKCISCVPGLSKRLYHQLENCGFYTLRKLLHHFPRTYADLQNAQIDLDDG 257
P IE L ++ V S+ L+N G T+ LL +FPR Y D
Sbjct: 127 PKSGQIE--LHTPLATVVSQSQHQTKLLKNLGLATVEDLLFYFPRDYLDYAQQ------- 177
Query: 258 QYFIFIGEIISSRGMKAGCSFSFLEVIVGCEIADTETTSGDEVVNID-SGQKKKIYLHLK 316
+ I E + AG + + + +V C + ++ I Q +I L
Sbjct: 178 ---VTIAE------LTAGETVTIVGRVVNCTCFTSPKNQNLNILQIQLRDQTGRI--KLS 226
Query: 317 KFFRGTRFTSIPFLKSIEGKHKVGEFVCVSGKVRAMRSNNHYEMREYNIDVLKDEDDLSL 376
+F+ G RF + + I+ + V SG V++ S + I+VL D S+
Sbjct: 227 RFYAGKRFAHRGWQEKIKKLYPPQAVVAASGLVKS--SKFGLTLDNPEIEVL-DRHSPSI 283
Query: 377 RA--KGRPYPIYPSKGGLNASLLRDTIARALQALPANFDPVPKEITQEFGLLCLFDAYMG 434
+ GR P+YP G+ A LR + A+ DP+P+EI +++ L+ L A
Sbjct: 284 DSFKVGRVLPVYPLTEGITADFLRKLVLACQTAIAKLSDPLPQEIREKYELIDLQTAIAQ 343
Query: 435 IHQPKHIDEADLARKRLIFDEFFYLQLGRLYQMLEGLGTQFEKEGLLDKYRKPRLNAAYM 494
IH P++ ++ LAR+RL+FDEFFYLQLG L + E +K + +A
Sbjct: 344 IHFPENTEKLSLARRRLVFDEFFYLQLGFLQRRYE---------------QKQQQQSAIF 388
Query: 495 EGWSSLTKKLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACM 554
L +K LP+ LT +Q ++EI+ DL +P PMNRL+QGDVG GKTVV A +
Sbjct: 389 TPHGELLEKFSDLLPFRLTQAQQRVVNEILQDLNKPSPMNRLVQGDVGSGKTVVGVFAIL 448
Query: 555 EVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKD 614
+ GYQAA M PTE+LA QHY+ L+ + + + P + LLTGST + R I
Sbjct: 449 AALQGGYQAALMAPTEVLAEQHYQKLVSWFNLL----YLP-VELLTGSTKTAKRREIHAQ 503
Query: 615 LQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMV 674
L TG + L++GTH+LI E V F L L ++DEQ RFGV QR + +K
Sbjct: 504 LSTGQLPLLVGTHALIQETVNFQRLGLVVIDEQHRFGVQQRAKLLAK------------- 550
Query: 675 NSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNE 734
G+ APHVL+M+ATPIPRTLAL L+GD+ ++QI +LPPGR PI T +I E
Sbjct: 551 ---GN-------APHVLSMTATPIPRTLALTLHGDLEVSQIDELPPGRQPIHTSVITAKE 600
Query: 735 K 735
+
Sbjct: 601 R 601
>sp|P96130|RECG_TREPA ATP-dependent DNA helicase RecG OS=Treponema pallidum (strain
Nichols) GN=recG PE=3 SV=1
Length = 686
Score = 222 bits (566), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 137/360 (38%), Positives = 198/360 (55%), Gaps = 27/360 (7%)
Query: 384 PIYPSKGGLNASLLRDTIARALQALPANFDP-VPKEITQEFGLLCLFDAYMGIHQPKHID 442
P+YP GL LR I A+ D +PK I +++ LL D + +H P+ +D
Sbjct: 145 PVYPLTKGLKQMKLRMLICAAMDQWIGTVDSELPKPILEKYHLLTKRDVLLSMHTPRTLD 204
Query: 443 EADLARKRLIFDEFFYLQLGRLYQMLEGLGTQFEKEGLLDKYRKPRLNAAYMEGWSSLTK 502
+ + LIF+EFF LQ+ + L+ G +G D+ + + S L K
Sbjct: 205 DVAKGKHSLIFEEFFSLQMTIGMRSLQKRGRLPLTQGESDQQSAI---PSVVSELSLLQK 261
Query: 503 KLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQ 562
KL R LP+ LT Q I+EI DL++ PM RL+QGDVG GKT+VAF +C+++I G Q
Sbjct: 262 KLHRCLPFELTVDQKRVITEITQDLEREEPMARLIQGDVGSGKTLVAFFSCLKIIEQGGQ 321
Query: 563 AAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITL 622
A + PTELLA QH + +LL + ++A LTG+ + + + L G+I L
Sbjct: 322 VALLAPTELLARQHADTAARLLAPI-----GIRLAFLTGNVKSEGRAYLLEALVAGEINL 376
Query: 623 VIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKD 682
V+GTH+L ++ V + LRL I+DEQ RFGV+QR S + +G+P
Sbjct: 377 VVGTHALFSKSVRYHDLRLVIIDEQHRFGVLQR-------------SALIQKGREGNP-- 421
Query: 683 DQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGN--EKGYENV 740
Q PH++ MSATPIPRTLAL+++GD+ ++ I +P GR P+ TYI EK YE V
Sbjct: 422 -QGKTPHIIMMSATPIPRTLALSVFGDLDISIIKSMPGGRKPVITYIARKTKAEKVYEFV 480
>sp|Q54900|RECG_STRPN ATP-dependent DNA helicase RecG OS=Streptococcus pneumoniae
serotype 4 (strain ATCC BAA-334 / TIGR4) GN=recG PE=3
SV=2
Length = 671
Score = 212 bits (540), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 163/531 (30%), Positives = 257/531 (48%), Gaps = 97/531 (18%)
Query: 207 LDKCISCVPGLSKRLYHQLENCGFYTLRKLLHHFPRTYADLQNAQI-DLDDGQYFIFIGE 265
L + + +PG+ + + G L+ LL +FP Y D + Q+ +L+DG+ + G+
Sbjct: 3 LHQPLHVLPGVGPKSAEKYAKLGIENLQDLLLYFPFRYEDFKTKQVLELEDGEKAVLSGQ 62
Query: 266 IISSRGMKAGCSFSFLEVIVGCEIADTETTSGDEVVNIDSGQKKKIYLHLKK--FFRGTR 323
+++ ++ + F ++ ++ LK+
Sbjct: 63 VVTPASVQ---YYGF--------------------------KRNRLRFSLKQGEVVFAVN 93
Query: 324 FTSIPFLKSIEGKHKVGEFVCVSGKV-RAMRSNNHYEMREYNIDVLKDEDDLSLRAKGRP 382
F + P+L K ++G + V GK RA S ++ + + EDDL
Sbjct: 94 FFNQPYLAD---KIELGATLAVFGKWDRAKASLTGMKV------LAQVEDDLQ------- 137
Query: 383 YPIYPSKGGLNASLLRDTIARAL-QALPANFDP-VPKEITQEFGLLCLFDAYMGIHQPKH 440
P+Y G++ + L I A Q L + +P+ + ++ L+ A +H PK+
Sbjct: 138 -PVYRLAQGISQASLVKVIKTAFDQGLDLLIEENLPQSLLDKYKLMSRCQAVRAMHFPKY 196
Query: 441 IDEADLARKRLIFDEFFYLQLGRLYQMLEGLGTQFEKEGLLDKYRKPRLNAAYMEGWSSL 500
+ E A +R+ F+E FY Q+ QML+ + + GL+ + + ++ A +
Sbjct: 197 LAEYKQALRRIKFEELFYFQMQ--LQMLKS-ENRVQGSGLVLNWSQEKVTAVKV------ 247
Query: 501 TKKLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSG 560
+LP++LT +Q ++ EI+ D+K MNRLLQGDVG GKTVVA LA + +G
Sbjct: 248 ------SLPFALTQAQEKSLQEILTDMKSDHHMNRLLQGDVGSGKTVVAGLAMFAAVTAG 301
Query: 561 YQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDI 620
YQAA MVPTE+LA QH+E L L N+ K+ALLTGS + R + + + G+
Sbjct: 302 YQAALMVPTEILAEQHFESLQNLFPNL-------KLALLTGSLKAAEKREVLETIAKGEA 354
Query: 621 TLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSP 680
L+IGTH+LI + VE++ L L I+DEQ RFGV QR K D
Sbjct: 355 DLIIGTHALIQDGVEYARLGLIIIDEQHRFGVGQRRILREK--------------GDN-- 398
Query: 681 KDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIE 731
P VL M+ATPIPRTLA+ +GDM ++ I +P GR PI T I+
Sbjct: 399 -------PDVLMMTATPIPRTLAITAFGDMDVSIIDQMPAGRKPIVTRWIK 442
>sp|O34942|RECG_BACSU ATP-dependent DNA helicase RecG OS=Bacillus subtilis (strain 168)
GN=recG PE=3 SV=1
Length = 682
Score = 205 bits (521), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 160/543 (29%), Positives = 248/543 (45%), Gaps = 119/543 (21%)
Query: 210 CISCVPGLSKRLYHQLENCGFYTLRKLLHHFPRTYADLQNAQIDLDDGQYFIFIGEIISS 269
I+ + G+ L G Y + LL++FP Y D
Sbjct: 8 SIANIKGIGPETEKTLNELGIYDISDLLNYFPYRYDD----------------------- 44
Query: 270 RGMKAGCSFSFLEVIVGCEIADTETTSGDEVVNIDSG----------QKKKIYLHLKKFF 319
E+ D E DE V ++ KK+ L +
Sbjct: 45 -----------------YELRDLEEVKHDERVTVEGKVHSEPSLTYYGKKRNRLTFRLLV 87
Query: 320 RGTRFTSI----PFLKSIEGKHKVGEFVCVSGKVRAMRSNNHYEMREYNIDVLKD---ED 372
T++ P+LK K +G V VSGK R ++ LK+ ++
Sbjct: 88 GHYLITAVCFNRPYLKK---KLSLGSVVTVSGKWDKHRQT-------ISVQELKNGPHQE 137
Query: 373 DLSLRAKGRPYPIYPSKGGLNASLLRDTIARALQALPANF-DPVPKEITQEFGLLCLFDA 431
D S+ P+Y K + ++R I +AL + DP+P+++ + + L + A
Sbjct: 138 DKSIE------PVYSVKENVTVKMMRRFIQQALTQYADSLPDPLPEKLRKSYKLPDYYQA 191
Query: 432 YMGIHQPKHIDEADLARKRLIFDEFFYLQLG-RLYQMLEGLGTQFEKEGLLDKYRKPRLN 490
+HQP+ + LAR+R +++EF QL + ++ E TQ G+ ++ L
Sbjct: 192 LKAMHQPETREALKLARRRFVYEEFLLFQLKMQAFRKAEREQTQ----GIRQRFSNEEL- 246
Query: 491 AAYMEGWSSLTKKLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAF 550
+ +++LP+ LT++Q + EI D+ P MNRLLQGDVG GKT VA
Sbjct: 247 -----------MRFIKSLPFPLTNAQSRVLREITADMSSPYRMNRLLQGDVGSGKTAVAA 295
Query: 551 LACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRM 610
+A I SGYQ A MVPTE+LA QH + L+ L +K +ALLT S K+ +
Sbjct: 296 IALYAAILSGYQGALMVPTEILAEQHADSLVSLF-----EKWDVSVALLTSSVKGKRRKE 350
Query: 611 IRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSG 670
+ + L G+I +++GTH+LI ++VEF AL L I DEQ RFGV QR + +K
Sbjct: 351 LLERLAAGEIDILVGTHALIQDEVEFKALSLVITDEQHRFGVEQRKKLRNK--------- 401
Query: 671 MAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYII 730
P VL M+ATPIPRTLA+ ++G+M ++ I ++P GR I+TY +
Sbjct: 402 --------------GQDPDVLFMTATPIPRTLAITVFGEMDVSVIDEMPAGRKRIETYWV 447
Query: 731 EGN 733
+ +
Sbjct: 448 KHD 450
>sp|O69460|RECG_MYCLE ATP-dependent DNA helicase RecG OS=Mycobacterium leprae (strain TN)
GN=recG PE=3 SV=2
Length = 743
Score = 203 bits (516), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 157/527 (29%), Positives = 254/527 (48%), Gaps = 78/527 (14%)
Query: 226 ENCGFYTLRKLLHHFPRTY---ADLQNAQIDLDDGQYFIFIGEIIS---SRGMKAGCSFS 279
E G T+ LL H+PR+Y A ++ AQ + + I I ++I+ + MK
Sbjct: 22 EVFGIRTVDDLLRHYPRSYTKGATVRGAQDERPEAGEHITIVDVITEAVTLPMKKDSKKK 81
Query: 280 FLEVIVGC---EIADTETTSGDEVVNIDSGQKKKIYLHLKK---FFRGTRFTSIP---FL 330
+L + VG ++ T +G I G K + L FFRG + P L
Sbjct: 82 YLRLTVGSGRNKVIATFFNAG----YISKGLTKDTRVMLSGEVGFFRGVMQLTHPAFLIL 137
Query: 331 KSIEGKHKVGEFVCVSGKVRAMRSNNHYEMREYNIDVLKDEDDLSLRAKGRPYPIYPSKG 390
S +G+++ S +R + + E + + R +PIYP+
Sbjct: 138 DSPDGRNRG------SSSLRRIADASQAVSGEVLMSAFER----------RFFPIYPAST 181
Query: 391 GLNASLLRDTIARALQALPANFDPVPKEITQEFGLLCLFDAYMGIHQPKHIDEADLARKR 450
L + + + + L+ L DP+P ++ + GL+ +A IH + + AR+R
Sbjct: 182 KLQSWDIYACVRQVLEVLDPVADPLPADLRAKHGLVSEDEALRAIHLAESESDRRRARER 241
Query: 451 LIFDEFFYLQLGRLYQMLEGLGTQFEKEGLLDKYRKPRLNAAYMEGWSSLTKKLLRALPY 510
L FDE LQ + ++ + + G PR + L +L+R LP+
Sbjct: 242 LTFDEAVGLQ----WALVTRRHGELSESG---PSAPPRSDG--------LMAELMRRLPF 286
Query: 511 SLTSSQLSAISEIIWD-LKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPT 569
LT Q + +++ D L P+NRLLQG+VG GKT+VA LA +++I +GYQ + PT
Sbjct: 287 ELTEGQ-REVRDVLSDGLAATRPLNRLLQGEVGSGKTIVAVLAMLQMIDAGYQCVLLAPT 345
Query: 570 ELLATQHYEHLLKLLD------NMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLV 623
E+LA QH + +L + ++ ++ALLTGS + Q + +R D+ +G +V
Sbjct: 346 EVLAAQHLLSIRDVLGPLGMGCQLGGAENATQVALLTGSMTMAQKKKVRADIFSGQTGIV 405
Query: 624 IGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDD 683
IGTH+L+ + +EF L + +VDEQ RFGV QR + +K M
Sbjct: 406 IGTHALLQDAIEFHNLGMVVVDEQHRFGVEQRDQLRTKARTGIM---------------- 449
Query: 684 QHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYII 730
PH+L M+ATPIPRT+AL +YGD+ ++ + +LP GR PI + +I
Sbjct: 450 ----PHLLVMTATPIPRTVALTVYGDLEMSTLRELPRGRQPITSNVI 492
>sp|O51528|RECG_BORBU ATP-dependent DNA helicase RecG OS=Borrelia burgdorferi (strain
ATCC 35210 / B31 / CIP 102532 / DSM 4680) GN=recG PE=3
SV=1
Length = 686
Score = 203 bits (516), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 159/534 (29%), Positives = 245/534 (45%), Gaps = 84/534 (15%)
Query: 214 VPGLSKRLYHQLENCGFYTLRKLLHHFPRTYADLQNAQIDLDDGQYFIFIGEIISSRGMK 273
+ GL ++ +L N + ++ L+ FP Y D QN Q
Sbjct: 13 IGGLGEKGVERLNNLQIFNVKDLIEFFPVKYEDRQNIQ---------------------- 50
Query: 274 AGCSFSFLEVIVGCEIADTETTSGDEVVNIDSGQKKKIYLHLKKFFRGTRFTSIPFLKS- 332
+F + C++ T G + KK + L +K F + F ++
Sbjct: 51 ---TFPDFSKVKSCDMMTVFTVLGHK--KFGDSSKKNLKLTVKSI-NEEPFEILLFNRAF 104
Query: 333 IEGKHKVGEFVCVSGKVRAMRSNNHYEMREYNIDVLKDEDDLSLRAKGRPYPIYPSKGGL 392
+E K+ + + K + + ++ +V D+ + R K + P+Y GL
Sbjct: 105 LENVFKIDKKFYIYSKFTYNDYSGLWSCSNFDSEVYSDKPE---RFK-KILPVYSLTEGL 160
Query: 393 NASLLRDTIARALQAL-PANFDPVPKEITQEFGLLCLFDAYMGIHQPKHIDEADLARKRL 451
+ + + AL+ +P+ + +++ LL L DA IH P ++ + A+K L
Sbjct: 161 TSKKISLYVKEALEYFFKFGQTDIPRFLIEKYSLLSLSDALKEIHFPSSLEMLEKAKKTL 220
Query: 452 IFDEFFYLQLGRLYQMLEGLGTQFEKEGLLDKYRKPRLNAAYMEGWSS-LTKKLLRALPY 510
I+ E F LQ +YR ++ + S L +K++ +LP+
Sbjct: 221 IYREIFLLQF-------------------FSRYRSSKILFREKKDLSKDLLEKVVSSLPF 261
Query: 511 SLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTE 570
LT Q +I EI +DL PMNRLLQGDVG GKT+VA L+ + +I +GYQ AFM PT+
Sbjct: 262 ELTEDQKISIDEIFFDLNSSKPMNRLLQGDVGSGKTLVALLSGLPLIEAGYQVAFMAPTD 321
Query: 571 LLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLI 630
LLA QHY++L +L + LLTGS K + ++ G L++GTH++
Sbjct: 322 LLARQHYDNLSNILAPF-----NISMTLLTGSLRKKDKEQALESIRNGTSGLIVGTHAIF 376
Query: 631 AEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHV 690
E EF L I+DEQ +FGVVQR +K G+ M
Sbjct: 377 YESTEFKRLAYVIIDEQHKFGVVQREELKNK------GEGVDM----------------- 413
Query: 691 LAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYII-EGNE-KGYENVYK 742
L MSATPIPR+ AL L+GD+ ++ I LP GR+PI TY+ GNE K YE + K
Sbjct: 414 LLMSATPIPRSFALTLFGDLEVSFIKTLPKGRLPITTYLARHGNEDKVYEFLRK 467
>sp|P64322|RECG_MYCTU ATP-dependent DNA helicase RecG OS=Mycobacterium tuberculosis
GN=recG PE=3 SV=1
Length = 737
Score = 202 bits (514), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 153/526 (29%), Positives = 247/526 (46%), Gaps = 76/526 (14%)
Query: 226 ENCGFYTLRKLLHHFPRTYADLQNAQIDLDD-----GQYFIFIGEIISSRG--MKAGCSF 278
E G T+ LL H+PR+Y + A++ + D G++ + I + MK +
Sbjct: 22 EQFGMRTVDDLLRHYPRSYVE-GAARVGIGDARPEAGEHITIVDVITDTYSFPMKKKPNR 80
Query: 279 SFLEVIVGCEIADTETT--SGDEVVNIDSGQKKKIYLHLKKFFRGTRFTSIP---FLKSI 333
L + VG T + D ++ + K + +++G + P L S
Sbjct: 81 KCLRITVGGGRNKVTATFFNADYIMRDLTKHTKVMLSGEVGYYKGAMQLTHPAFLILDSP 140
Query: 334 EGK-HKVGEFVCVSGKVRAMRSNNHYEMREYNIDVLKDEDDLSLRAKGRPYPIYPSKGGL 392
+GK H ++ +A+ E E R +PIYP+ +
Sbjct: 141 DGKNHGTRSLKSIADASKAISGELVVEEFER-----------------RFFPIYPASTKV 183
Query: 393 NASLLRDTIARALQALPANFDPVPKEITQEFGLLCLFDAYMGIHQPKHIDEADLARKRLI 452
+ + + + L L DP+P E+ + GL+ +A IH + + AR+RL
Sbjct: 184 QSWDIFKCVRQVLDVLDRVDDPLPAELRAKHGLIPEDEALRAIHLAESQSLRERARERLT 243
Query: 453 FDEFFYLQLGRLYQMLEGLGTQFEKEGLLDKYRKPRLNAAYMEGWSS--LTKKLLRALPY 510
FDE LQ + + + G L + + W S L +LLR LP+
Sbjct: 244 FDEAVGLQWALVAR----------RHGELSE-------SGPSAAWKSNGLAAELLRRLPF 286
Query: 511 SLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTE 570
LT+ Q + + L P+NRLLQG+VG GKT+VA LA ++++ +GYQ A + PTE
Sbjct: 287 ELTAGQREVLDVLSDGLAANRPLNRLLQGEVGSGKTIVAVLAMLQMVDAGYQCALLAPTE 346
Query: 571 LLATQHYEHLLKLL------DNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVI 624
+LA QH + +L + ++ ++ALLTGS Q + +R ++ +G + +VI
Sbjct: 347 VLAAQHLRSIRDVLGPLAMGGQLGGAENATRVALLTGSMTAGQKKQVRAEIASGQVGIVI 406
Query: 625 GTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQ 684
GTH+L+ E V+F L + +VDEQ RFGV QR + +K +P
Sbjct: 407 GTHALLQEAVDFHNLGMVVVDEQHRFGVEQRDQLRAK-----------------APAG-- 447
Query: 685 HMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYII 730
+ PH+L M+ATPIPRT+AL +YGD+ + + +LP GR PI T +I
Sbjct: 448 -ITPHLLVMTATPIPRTVALTVYGDLETSTLRELPLGRQPIATNVI 492
>sp|P64323|RECG_MYCBO ATP-dependent DNA helicase RecG OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=recG PE=3 SV=1
Length = 737
Score = 202 bits (514), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 153/526 (29%), Positives = 247/526 (46%), Gaps = 76/526 (14%)
Query: 226 ENCGFYTLRKLLHHFPRTYADLQNAQIDLDD-----GQYFIFIGEIISSRG--MKAGCSF 278
E G T+ LL H+PR+Y + A++ + D G++ + I + MK +
Sbjct: 22 EQFGMRTVDDLLRHYPRSYVE-GAARVGIGDARPEAGEHITIVDVITDTYSFPMKKKPNR 80
Query: 279 SFLEVIVGCEIADTETT--SGDEVVNIDSGQKKKIYLHLKKFFRGTRFTSIP---FLKSI 333
L + VG T + D ++ + K + +++G + P L S
Sbjct: 81 KCLRITVGGGRNKVTATFFNADYIMRDLTKHTKVMLSGEVGYYKGAMQLTHPAFLILDSP 140
Query: 334 EGK-HKVGEFVCVSGKVRAMRSNNHYEMREYNIDVLKDEDDLSLRAKGRPYPIYPSKGGL 392
+GK H ++ +A+ E E R +PIYP+ +
Sbjct: 141 DGKNHGTRSLKSIADASKAISGELVVEEFER-----------------RFFPIYPASTKV 183
Query: 393 NASLLRDTIARALQALPANFDPVPKEITQEFGLLCLFDAYMGIHQPKHIDEADLARKRLI 452
+ + + + L L DP+P E+ + GL+ +A IH + + AR+RL
Sbjct: 184 QSWDIFKCVRQVLDVLDRVDDPLPAELRAKHGLIPEDEALRAIHLAESQSLRERARERLT 243
Query: 453 FDEFFYLQLGRLYQMLEGLGTQFEKEGLLDKYRKPRLNAAYMEGWSS--LTKKLLRALPY 510
FDE LQ + + + G L + + W S L +LLR LP+
Sbjct: 244 FDEAVGLQWALVAR----------RHGELSE-------SGPSAAWKSNGLAAELLRRLPF 286
Query: 511 SLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTE 570
LT+ Q + + L P+NRLLQG+VG GKT+VA LA ++++ +GYQ A + PTE
Sbjct: 287 ELTAGQREVLDVLSDGLAANRPLNRLLQGEVGSGKTIVAVLAMLQMVDAGYQCALLAPTE 346
Query: 571 LLATQHYEHLLKLL------DNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVI 624
+LA QH + +L + ++ ++ALLTGS Q + +R ++ +G + +VI
Sbjct: 347 VLAAQHLRSIRDVLGPLAMGGQLGGAENATRVALLTGSMTAGQKKQVRAEIASGQVGIVI 406
Query: 625 GTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQ 684
GTH+L+ E V+F L + +VDEQ RFGV QR + +K +P
Sbjct: 407 GTHALLQEAVDFHNLGMVVVDEQHRFGVEQRDQLRAK-----------------APAG-- 447
Query: 685 HMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYII 730
+ PH+L M+ATPIPRT+AL +YGD+ + + +LP GR PI T +I
Sbjct: 448 -ITPHLLVMTATPIPRTVALTVYGDLETSTLRELPLGRQPIATNVI 492
>sp|O67837|RECG_AQUAE ATP-dependent DNA helicase RecG OS=Aquifex aeolicus (strain VF5)
GN=recG PE=3 SV=1
Length = 792
Score = 201 bits (512), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 122/299 (40%), Positives = 167/299 (55%), Gaps = 48/299 (16%)
Query: 435 IHQPKHIDE------ADLARKRLIFDEFFYLQLGRLYQMLEGLGTQFEKEGLLDKYRKPR 488
+H PK I DL KR+I+DE F QL L + E + K + P+
Sbjct: 294 LHNPKDISVNALNSFTDLYHKRVIYDELFLFQLALLLKKQE-----------IKKEKAPK 342
Query: 489 LNAAYMEGWSSLTKKLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVV 548
+N +K + LP+ LT +Q AI EI+ DL + VPMNRLLQGDVG GKT+V
Sbjct: 343 VNVD-----EKFLRKAIEKLPFKLTRAQERAIKEILEDLSRDVPMNRLLQGDVGSGKTIV 397
Query: 549 AFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQS 608
A L + V+ SGYQ A MVPTE+LA QHY+ ++L + + +ALLTGS Q
Sbjct: 398 AILTSLAVVKSGYQVAVMVPTEILAHQHYKKFSEMLKD-----YGVNVALLTGSLTPSQK 452
Query: 609 RMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMS 668
+ + K ++ G+I +++GTH+LI +KVEF L I+DEQ RFGV+QR K
Sbjct: 453 KSVYKHVKEGNIHVLVGTHALIQDKVEFKNLGYVIIDEQHRFGVMQRKLLLEK------- 505
Query: 669 SGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKT 727
+ + PH L MSATPIPRTLAL++YGD+ ++ I +LPPGR + T
Sbjct: 506 --------------GKGLYPHCLVMSATPIPRTLALSIYGDLDISIIDELPPGRKEVIT 550
>sp|Q5HPW4|RECG_STAEQ ATP-dependent DNA helicase RecG OS=Staphylococcus epidermidis
(strain ATCC 35984 / RP62A) GN=recG PE=3 SV=1
Length = 682
Score = 197 bits (502), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 138/406 (33%), Positives = 207/406 (50%), Gaps = 60/406 (14%)
Query: 324 FTSIPFLKSIEGKHKVGEFVCVSGKVRAMRSNNHYEMREYNIDVLKDEDDLSLRAKGRPY 383
F + P+LK K ++ V + GK R+ + K+++D L
Sbjct: 100 FFNQPYLKK---KLELNSIVTIKGKWN--RNKQEINGNRIFFNDQKNQEDAHLE------ 148
Query: 384 PIYPSKGGLNASLLRDTIARALQALPANFDPVPKEITQEFGLLCLFDAYMGIHQPKHIDE 443
P+Y K G+ LRD I +AL + + + + ++ +++ L L +H P ID+
Sbjct: 149 PVYRVKEGIKQKQLRDNIRQALSDVTIH-EWLTDDLREKYKLETLAYTIQTLHHP--IDK 205
Query: 444 ADL--ARKRLIFDEFFYLQLGRLYQMLEGLGTQFEKEGLLDKYRKPRLNAAYMEGWSSLT 501
+L AR+ F E F +L + L++ K A + +
Sbjct: 206 QNLLRARRTYAFTELFMFELRMQW---------------LNRLEKTSDEAIEINYDINKV 250
Query: 502 KKLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGY 561
K+ + +LP+ LT +Q +++EI DLK P+ M+RLLQGDVG GKT+VA + + +GY
Sbjct: 251 KQFIDSLPFELTDAQKVSVNEIFRDLKAPIRMHRLLQGDVGSGKTIVAAICMYALKTAGY 310
Query: 562 QAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDIT 621
Q+A MVPTE+LA QH E L++L N +ALLTGS K+ R++ + L+ G I
Sbjct: 311 QSALMVPTEILAEQHAESLMQLFGNT------MNVALLTGSVKGKKRRLLLEQLENGTID 364
Query: 622 LVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPK 681
+IGTH+LI + V F+ + L I DEQ RFGV QR K AM N
Sbjct: 365 CLIGTHALIQDDVVFNNVGLVITDEQHRFGVNQRQILREK---------GAMTN------ 409
Query: 682 DDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKT 727
VL M+ATPIPRTLA++++G+M ++ I LP GR PIKT
Sbjct: 410 --------VLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPIKT 447
>sp|Q8CSV3|RECG_STAES ATP-dependent DNA helicase RecG OS=Staphylococcus epidermidis
(strain ATCC 12228) GN=recG PE=3 SV=1
Length = 682
Score = 196 bits (498), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 137/404 (33%), Positives = 202/404 (50%), Gaps = 56/404 (13%)
Query: 324 FTSIPFLKSIEGKHKVGEFVCVSGKVRAMRSNNHYEMREYNIDVLKDEDDLSLRAKGRPY 383
F + P+LK K ++ V + GK R+ K+++D L
Sbjct: 100 FFNQPYLKK---KLELNSIVTIKGKWN--RNKQEINGNRIFFKDQKNQEDTHLE------ 148
Query: 384 PIYPSKGGLNASLLRDTIARALQALPANFDPVPKEITQEFGLLCLFDAYMGIHQPKHIDE 443
PIY K G+ LRD I +AL + + + + ++ +++ L L +H P +
Sbjct: 149 PIYRIKEGIKQKQLRDNIRQALSDVTIH-EWLTDDLREKYKLETLAYTIQTLHHPINKQN 207
Query: 444 ADLARKRLIFDEFFYLQLGRLYQMLEGLGTQFEKEGLLDKYRKPRLNAAYMEGWSSLTKK 503
AR+ F E F +L + L++ K A + + K+
Sbjct: 208 LLRARRTYAFTELFMFELRMQW---------------LNRLEKTSDEAIEINYDINKVKQ 252
Query: 504 LLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQA 563
+ +LP+ LT +Q +++EI DLK P+ M+RLLQGDVG GKTVVA + + +GYQ+
Sbjct: 253 FIDSLPFELTDAQKVSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQS 312
Query: 564 AFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLV 623
A MVPTE+LA QH E L++L N +ALLTGS K+ R++ + L+ G I +
Sbjct: 313 ALMVPTEILAEQHAESLIQLFGNT------MNVALLTGSVKGKKRRLLLEQLENGTIDCL 366
Query: 624 IGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDD 683
IGTH+LI + V F+ + L I DEQ RFGV QR K AM N
Sbjct: 367 IGTHALIQDDVVFNNVGLVITDEQHRFGVNQRQILREK---------GAMTN-------- 409
Query: 684 QHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKT 727
VL M+ATPIPRTLA++++G+M ++ I LP GR PIKT
Sbjct: 410 ------VLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPIKT 447
>sp|Q8NX11|RECG_STAAW ATP-dependent DNA helicase RecG OS=Staphylococcus aureus (strain
MW2) GN=recG PE=3 SV=1
Length = 686
Score = 191 bits (486), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 125/345 (36%), Positives = 181/345 (52%), Gaps = 47/345 (13%)
Query: 384 PIYPSKGGLNASLLRDTIARALQALPANFDPVPKEITQEFGLLCLFDAYMGIHQPKHIDE 443
P+Y K G+ +RD I +AL + + + + E+ +++ L L +H PK ++
Sbjct: 153 PVYRIKEGIKQKQIRDQIRQALNDVTIH-EWLTDELREKYKLETLDFTLNTLHHPKSKED 211
Query: 444 ADLARKRLIFDEFFYLQLGRLYQMLEGLGTQFEKEGLLDKYRKPRLNAAYMEGWSSLTKK 503
AR+ F E F +L + L++ K A ++ K
Sbjct: 212 LLRARRTYAFTELFLFELRMQW---------------LNRLEKSSDEAIEIDYGLDQVKS 256
Query: 504 LLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQA 563
+ LP+ LT +Q S+++EI DLK P+ M+RLLQGDVG GKTVVA + + +GYQ+
Sbjct: 257 FIDRLPFELTEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQS 316
Query: 564 AFMVPTELLATQHYEHLLKLL-DNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITL 622
A MVPTE+LA QH E L+ L D+M +ALLTGS K+ +++ + L+ G I
Sbjct: 317 ALMVPTEILAEQHAESLMALFGDSM-------NVALLTGSVKGKKRKILLEQLENGTIDC 369
Query: 623 VIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKD 682
+IGTH+LI + V F + L I DEQ RFGV QR K AM N
Sbjct: 370 LIGTHALIQDDVIFHNVGLVITDEQHRFGVNQRQLLREK---------GAMTN------- 413
Query: 683 DQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKT 727
VL M+ATPIPRTLA++++G+M ++ I LP GR PI T
Sbjct: 414 -------VLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPIIT 451
>sp|Q6G9Y6|RECG_STAAS ATP-dependent DNA helicase RecG OS=Staphylococcus aureus (strain
MSSA476) GN=recG PE=3 SV=1
Length = 686
Score = 191 bits (486), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 125/345 (36%), Positives = 181/345 (52%), Gaps = 47/345 (13%)
Query: 384 PIYPSKGGLNASLLRDTIARALQALPANFDPVPKEITQEFGLLCLFDAYMGIHQPKHIDE 443
P+Y K G+ +RD I +AL + + + + E+ +++ L L +H PK ++
Sbjct: 153 PVYRIKEGIKQKQIRDQIRQALNDVTIH-EWLTDELREKYKLETLDFTLNTLHHPKSKED 211
Query: 444 ADLARKRLIFDEFFYLQLGRLYQMLEGLGTQFEKEGLLDKYRKPRLNAAYMEGWSSLTKK 503
AR+ F E F +L + L++ K A ++ K
Sbjct: 212 LLRARRTYAFTELFLFELRMQW---------------LNRLEKSSDEAIEIDYGLDQVKS 256
Query: 504 LLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQA 563
+ LP+ LT +Q S+++EI DLK P+ M+RLLQGDVG GKTVVA + + +GYQ+
Sbjct: 257 FIDRLPFELTEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQS 316
Query: 564 AFMVPTELLATQHYEHLLKLL-DNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITL 622
A MVPTE+LA QH E L+ L D+M +ALLTGS K+ +++ + L+ G I
Sbjct: 317 ALMVPTEILAEQHAESLMALFGDSM-------NVALLTGSVKGKKRKILLEQLENGTIDC 369
Query: 623 VIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKD 682
+IGTH+LI + V F + L I DEQ RFGV QR K AM N
Sbjct: 370 LIGTHALIQDDVIFHNVGLVITDEQHRFGVNQRQLLREK---------GAMTN------- 413
Query: 683 DQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKT 727
VL M+ATPIPRTLA++++G+M ++ I LP GR PI T
Sbjct: 414 -------VLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPIIT 451
>sp|Q5HGK6|RECG_STAAC ATP-dependent DNA helicase RecG OS=Staphylococcus aureus (strain
COL) GN=recG PE=3 SV=1
Length = 686
Score = 191 bits (485), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 125/345 (36%), Positives = 181/345 (52%), Gaps = 47/345 (13%)
Query: 384 PIYPSKGGLNASLLRDTIARALQALPANFDPVPKEITQEFGLLCLFDAYMGIHQPKHIDE 443
P+Y K G+ +RD I +AL + + + + E+ +++ L L +H PK ++
Sbjct: 153 PVYRIKEGIKQKQIRDQIRQALNDVTIH-EWLTDELREKYKLETLDFTLNTLHHPKSKED 211
Query: 444 ADLARKRLIFDEFFYLQLGRLYQMLEGLGTQFEKEGLLDKYRKPRLNAAYMEGWSSLTKK 503
AR+ F E F +L + L++ K A ++ K
Sbjct: 212 LLRARRTYAFTELFLFELRMQW---------------LNRLEKSSDEAIEIDYDIDQVKS 256
Query: 504 LLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQA 563
+ LP+ LT +Q S+++EI DLK P+ M+RLLQGDVG GKTVVA + + +GYQ+
Sbjct: 257 FIDRLPFELTEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQS 316
Query: 564 AFMVPTELLATQHYEHLLKLL-DNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITL 622
A MVPTE+LA QH E L+ L D+M +ALLTGS K+ +++ + L+ G I
Sbjct: 317 ALMVPTEILAEQHAESLMALFGDSM-------NVALLTGSVKGKKRKILLEQLENGTIDC 369
Query: 623 VIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKD 682
+IGTH+LI + V F + L I DEQ RFGV QR K AM N
Sbjct: 370 LIGTHALIQDDVIFHNVGLVITDEQHRFGVNQRQLLREK---------GAMTN------- 413
Query: 683 DQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKT 727
VL M+ATPIPRTLA++++G+M ++ I LP GR PI T
Sbjct: 414 -------VLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPIIT 451
>sp|O50581|RECG_STAA8 ATP-dependent DNA helicase RecG OS=Staphylococcus aureus (strain
NCTC 8325) GN=recG PE=3 SV=1
Length = 686
Score = 191 bits (485), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 125/345 (36%), Positives = 181/345 (52%), Gaps = 47/345 (13%)
Query: 384 PIYPSKGGLNASLLRDTIARALQALPANFDPVPKEITQEFGLLCLFDAYMGIHQPKHIDE 443
P+Y K G+ +RD I +AL + + + + E+ +++ L L +H PK ++
Sbjct: 153 PVYRIKEGIKQKQIRDQIRQALNDVTIH-EWLTDELREKYKLETLDFTLNTLHHPKSKED 211
Query: 444 ADLARKRLIFDEFFYLQLGRLYQMLEGLGTQFEKEGLLDKYRKPRLNAAYMEGWSSLTKK 503
AR+ F E F +L + L++ K A ++ K
Sbjct: 212 LLRARRTYAFTELFLFELRMQW---------------LNRLEKSSDEAIEIDYDIDQVKS 256
Query: 504 LLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQA 563
+ LP+ LT +Q S+++EI DLK P+ M+RLLQGDVG GKTVVA + + +GYQ+
Sbjct: 257 FIDRLPFELTEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQS 316
Query: 564 AFMVPTELLATQHYEHLLKLL-DNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITL 622
A MVPTE+LA QH E L+ L D+M +ALLTGS K+ +++ + L+ G I
Sbjct: 317 ALMVPTEILAEQHAESLMALFGDSM-------NVALLTGSVKGKKRKILLEQLENGTIDC 369
Query: 623 VIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKD 682
+IGTH+LI + V F + L I DEQ RFGV QR K AM N
Sbjct: 370 LIGTHALIQDDVIFHNVGLVITDEQHRFGVNQRQLLREK---------GAMTN------- 413
Query: 683 DQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKT 727
VL M+ATPIPRTLA++++G+M ++ I LP GR PI T
Sbjct: 414 -------VLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPIIT 451
>sp|P64325|RECG_STAAN ATP-dependent DNA helicase RecG OS=Staphylococcus aureus (strain
N315) GN=recG PE=1 SV=1
Length = 686
Score = 191 bits (484), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 125/345 (36%), Positives = 181/345 (52%), Gaps = 47/345 (13%)
Query: 384 PIYPSKGGLNASLLRDTIARALQALPANFDPVPKEITQEFGLLCLFDAYMGIHQPKHIDE 443
P+Y K G+ +RD I +AL + + + + E+ +++ L L +H PK ++
Sbjct: 153 PVYRIKEGIKQKQIRDQIRQALNDVTIH-EWLTDELREKYKLETLDFTLNTLHHPKSKED 211
Query: 444 ADLARKRLIFDEFFYLQLGRLYQMLEGLGTQFEKEGLLDKYRKPRLNAAYMEGWSSLTKK 503
AR+ F E F +L + L++ K A ++ K
Sbjct: 212 LLRARRTYAFTELFLFELRMQW---------------LNRLEKSSDEAIEIDYDLDQVKS 256
Query: 504 LLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQA 563
+ LP+ LT +Q S+++EI DLK P+ M+RLLQGDVG GKTVVA + + +GYQ+
Sbjct: 257 FIDRLPFELTEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQS 316
Query: 564 AFMVPTELLATQHYEHLLKLL-DNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITL 622
A MVPTE+LA QH E L+ L D+M +ALLTGS K+ +++ + L+ G I
Sbjct: 317 ALMVPTEILAEQHAESLMALFGDSM-------NVALLTGSVKGKKRKILLEQLENGTIDC 369
Query: 623 VIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKD 682
+IGTH+LI + V F + L I DEQ RFGV QR K AM N
Sbjct: 370 LIGTHALIQDDVIFHNVGLVITDEQHRFGVNQRQLLREK---------GAMTN------- 413
Query: 683 DQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKT 727
VL M+ATPIPRTLA++++G+M ++ I LP GR PI T
Sbjct: 414 -------VLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPIIT 451
>sp|P64324|RECG_STAAM ATP-dependent DNA helicase RecG OS=Staphylococcus aureus (strain
Mu50 / ATCC 700699) GN=recG PE=1 SV=1
Length = 686
Score = 191 bits (484), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 125/345 (36%), Positives = 181/345 (52%), Gaps = 47/345 (13%)
Query: 384 PIYPSKGGLNASLLRDTIARALQALPANFDPVPKEITQEFGLLCLFDAYMGIHQPKHIDE 443
P+Y K G+ +RD I +AL + + + + E+ +++ L L +H PK ++
Sbjct: 153 PVYRIKEGIKQKQIRDQIRQALNDVTIH-EWLTDELREKYKLETLDFTLNTLHHPKSKED 211
Query: 444 ADLARKRLIFDEFFYLQLGRLYQMLEGLGTQFEKEGLLDKYRKPRLNAAYMEGWSSLTKK 503
AR+ F E F +L + L++ K A ++ K
Sbjct: 212 LLRARRTYAFTELFLFELRMQW---------------LNRLEKSSDEAIEIDYDLDQVKS 256
Query: 504 LLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQA 563
+ LP+ LT +Q S+++EI DLK P+ M+RLLQGDVG GKTVVA + + +GYQ+
Sbjct: 257 FIDRLPFELTEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQS 316
Query: 564 AFMVPTELLATQHYEHLLKLL-DNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITL 622
A MVPTE+LA QH E L+ L D+M +ALLTGS K+ +++ + L+ G I
Sbjct: 317 ALMVPTEILAEQHAESLMALFGDSM-------NVALLTGSVKGKKRKILLEQLENGTIDC 369
Query: 623 VIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKD 682
+IGTH+LI + V F + L I DEQ RFGV QR K AM N
Sbjct: 370 LIGTHALIQDDVIFHNVGLVITDEQHRFGVNQRQLLREK---------GAMTN------- 413
Query: 683 DQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKT 727
VL M+ATPIPRTLA++++G+M ++ I LP GR PI T
Sbjct: 414 -------VLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPIIT 451
>sp|Q6GHK8|RECG_STAAR ATP-dependent DNA helicase RecG OS=Staphylococcus aureus (strain
MRSA252) GN=recG PE=3 SV=1
Length = 686
Score = 187 bits (476), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 124/345 (35%), Positives = 180/345 (52%), Gaps = 47/345 (13%)
Query: 384 PIYPSKGGLNASLLRDTIARALQALPANFDPVPKEITQEFGLLCLFDAYMGIHQPKHIDE 443
P+Y K G+ +RD I +AL + + + + E+ +++ L L +H PK ++
Sbjct: 153 PVYRIKEGIKQKQIRDQIRQALNDVTIH-EWLTDELREKYKLETLDFTLNTLHHPKSKED 211
Query: 444 ADLARKRLIFDEFFYLQLGRLYQMLEGLGTQFEKEGLLDKYRKPRLNAAYMEGWSSLTKK 503
AR+ F E F +L + L++ K A ++ K
Sbjct: 212 LLRARRTYAFTELFLFELRMQW---------------LNRLEKSSDEAIEIDYDLDQVKS 256
Query: 504 LLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQA 563
+ LP+ LT +Q S+++EI DLK P+ M+RLLQGDVG GKTVVA + + +GYQ+
Sbjct: 257 FIDRLPFELTEAQKSSVNEIFRDLKAPIRMHRLLQGDVGSGKTVVAAICMYALKTAGYQS 316
Query: 564 AFMVPTELLATQHYEHLLKLL-DNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITL 622
A MVPTE+LA QH E L+ L D+M +ALLTGS K+ +++ + L+ I
Sbjct: 317 ALMVPTEILAEQHAESLIALFGDSM-------NVALLTGSVKGKKRKILLEQLENRTIDC 369
Query: 623 VIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKD 682
+IGTH+LI + V F + L I DEQ RFGV QR K AM N
Sbjct: 370 LIGTHALIQDDVIFHNVGLVITDEQHRFGVNQRQLLREK---------GAMTN------- 413
Query: 683 DQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKT 727
VL M+ATPIPRTLA++++G+M ++ I LP GR PI T
Sbjct: 414 -------VLFMTATPIPRTLAISVFGEMDVSSIKQLPKGRKPIIT 451
>sp|Q8XD86|RECG_ECO57 ATP-dependent DNA helicase RecG OS=Escherichia coli O157:H7 GN=recG
PE=3 SV=1
Length = 693
Score = 173 bits (438), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 158/539 (29%), Positives = 244/539 (45%), Gaps = 94/539 (17%)
Query: 206 LLDKC-ISCVPGLSKRLYHQLENCGFYTLRKLLHHFPRTYADLQNAQI--DLDDGQYFIF 262
LLD +S + G+ L ++L +T++ LL H P Y D + +L G Y
Sbjct: 5 LLDAVPLSSLTGVGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATV 64
Query: 263 IGEIISSRGMKAGCSFSFL-EVIVGCEIADTETTSGDEVVNIDSGQKKKIYLHLKKFFRG 321
GE+++ C+ SF ++ C+I+D G ++ + +FF
Sbjct: 65 EGEVLN-------CNISFGGRRMMTCQISD-----GSGILTM-------------RFFN- 98
Query: 322 TRFTSIPFLKSIEGKHKVGEFVCVSGKVRAMRSNNHYEMREYNIDVLKDEDDLSL-RAKG 380
F +++ G V G+ + + EY + + DLS +
Sbjct: 99 -------FSAAMKNSLATGRRVLAYGEAKRGKYGAEMIHPEYRV-----QGDLSTPELQE 146
Query: 381 RPYPIYPSKGGLNASLLRDTIARALQALP--ANFDPVPKEITQEFGLLCLFDAYMGIHQP 438
P+YP+ G+ + LR +AL L A + +P E++Q G++ L +A +H+P
Sbjct: 147 TLTPVYPTTEGVKQATLRKLTDQALDLLDTCAIEELLPPELSQ--GMMTLPEALRTLHRP 204
Query: 439 K-HIDEADL------ARKRLIFDEFFYLQLGRLYQMLEGLGTQFEKEGLLDKYRKPRLNA 491
+ +DL A++RLI +E L L G Q R +A
Sbjct: 205 PPTLQLSDLETGQHPAQRRLILEELLAHNLSMLALRA---GAQ-------------RFHA 248
Query: 492 AYMEGWSSLTKKLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFL 551
+ +L KLL ALP+ T +Q ++EI D+ VPM RL+QGDVG GKT+VA L
Sbjct: 249 QPLSANDALKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGDVGSGKTLVAAL 308
Query: 552 ACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMI 611
A + I G Q A M PTELLA QH + + + ++ L G K
Sbjct: 309 AALRAIAHGKQVALMAPTELLAEQHANNFRNWFEPL-----GIEVGWLAGKQKGKARLSQ 363
Query: 612 RKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGM 671
++ + +G + +++GTH++ E+V+F+ L L I+DEQ RFGV QR K
Sbjct: 364 QEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEK---------- 413
Query: 672 AMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYII 730
Q PH L M+ATPIPRTLA+ Y D+ + I +LPPGR P+ T I
Sbjct: 414 ---------GQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAI 463
>sp|P24230|RECG_ECOLI ATP-dependent DNA helicase RecG OS=Escherichia coli (strain K12)
GN=recG PE=1 SV=1
Length = 693
Score = 172 bits (435), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 158/539 (29%), Positives = 243/539 (45%), Gaps = 94/539 (17%)
Query: 206 LLDKC-ISCVPGLSKRLYHQLENCGFYTLRKLLHHFPRTYADLQNAQI--DLDDGQYFIF 262
LLD +S + G+ L ++L +T++ LL H P Y D + +L G Y
Sbjct: 5 LLDAVPLSSLTGVGAALSNKLAKINLHTVQDLLLHLPLRYEDRTHLYPIGELLPGVYATV 64
Query: 263 IGEIISSRGMKAGCSFSFL-EVIVGCEIADTETTSGDEVVNIDSGQKKKIYLHLKKFFRG 321
GE+++ C+ SF ++ C+I+D G ++ + +FF
Sbjct: 65 EGEVLN-------CNISFGGRRMMTCQISD-----GSGILTM-------------RFFN- 98
Query: 322 TRFTSIPFLKSIEGKHKVGEFVCVSGKVRAMRSNNHYEMREYNIDVLKDEDDLSL-RAKG 380
F +++ G V G+ + + EY + + DLS +
Sbjct: 99 -------FSAAMKNSLAAGRRVLAYGEAKRGKYGAEMIHPEYRV-----QGDLSTPELQE 146
Query: 381 RPYPIYPSKGGLNASLLRDTIARALQALP--ANFDPVPKEITQEFGLLCLFDAYMGIHQP 438
P+YP+ G+ + LR +AL L A + +P E++Q G++ L +A +H+P
Sbjct: 147 TLTPVYPTTEGVKQATLRKLTDQALDLLDTCAIEELLPPELSQ--GMMTLPEALRTLHRP 204
Query: 439 K-HIDEADL------ARKRLIFDEFFYLQLGRLYQMLEGLGTQFEKEGLLDKYRKPRLNA 491
+ +DL A++RLI +E L L G Q R +A
Sbjct: 205 PPTLQLSDLETGQHPAQRRLILEELLAHNLSMLALRA---GAQ-------------RFHA 248
Query: 492 AYMEGWSSLTKKLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFL 551
+ +L KLL ALP+ T +Q ++EI D+ VPM RL+QGDVG GKT+VA L
Sbjct: 249 QPLSANDTLKNKLLAALPFKPTGAQARVVAEIERDMALDVPMMRLVQGDVGSGKTLVAAL 308
Query: 552 ACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMI 611
A + I G Q A M PTELLA QH + + ++ L G K
Sbjct: 309 AALRAIAHGKQVALMAPTELLAEQHANNFRNWFAPL-----GIEVGWLAGKQKGKARLAQ 363
Query: 612 RKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGM 671
++ + +G + +++GTH++ E+V+F+ L L I+DEQ RFGV QR K
Sbjct: 364 QEAIASGQVQMIVGTHAIFQEQVQFNGLALVIIDEQHRFGVHQRLALWEK---------- 413
Query: 672 AMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYII 730
Q PH L M+ATPIPRTLA+ Y D+ + I +LPPGR P+ T I
Sbjct: 414 ---------GQQQGFHPHQLIMTATPIPRTLAMTAYADLDTSVIDELPPGRTPVTTVAI 463
>sp|Q9CMB4|RECG_PASMU ATP-dependent DNA helicase RecG OS=Pasteurella multocida (strain
Pm70) GN=recG PE=3 SV=1
Length = 693
Score = 171 bits (434), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 158/539 (29%), Positives = 234/539 (43%), Gaps = 105/539 (19%)
Query: 211 ISCVPGLSKRLYHQLENCGFYTLRKLLHHFPRTYADLQNAQ--IDLDDGQYFIFIGEIIS 268
++ + G+ + +L G + L+ LL H P Y D DL Y +
Sbjct: 11 LTTLSGVGAAISDKLGRIGIHNLQDLLFHLPIRYEDRTRITPIHDLRPDAY-------AT 63
Query: 269 SRGMKAGCSFSFLEVIVGCEIADTETTSGDEVVNID-SGQKKKIYLHLKKFFRGTRFTSI 327
G+ C F ++N+ S KI L F G + +
Sbjct: 64 IEGLVQTCEVQF---------------GKRPILNVSLSDGTSKIMLRFFNFNAGMKNSLQ 108
Query: 328 PFLKSIEGKHKVGEFVCVSGKVRAMRSNNHYEMREYNIDVLKDEDDLSLRAKGRPYPIYP 387
P G V G+V+ R EY I ++D L L PIY
Sbjct: 109 P-----------GARVKAFGEVKRGRFMAEIHHPEYQI--IRDNAPLILEETL--TPIYS 153
Query: 388 SKGGLNASLLRDTIARAL---------QALPANFDPVPKEITQEFGLLCLFDAYMGIHQP 438
+ G+ + LR +AL + LP F+P P L +A +H+P
Sbjct: 154 TTEGIKQNSLRKLTDQALAVLENIQIAEILPNEFNPHP---------FSLKEAIRFLHRP 204
Query: 439 ------KHIDEADL-ARKRLIFDEFFYLQLGRLYQMLEGLGTQFEKEGLLDKYRKPRLNA 491
+ +++ A++RLIF+E L Q + +GTQ + +A
Sbjct: 205 PPDVSLEALEKGTHPAQQRLIFEELLAHNLA--MQKVR-IGTQ-------------QFSA 248
Query: 492 AYMEGWSSLTKKLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFL 551
+ + L ++ L LP++ T +Q+ EI DL P PM RL+QGDVG GKT+VA L
Sbjct: 249 YPLSYQTDLKQRFLAQLPFTPTDAQVRVTQEIEQDLTHPFPMMRLVQGDVGSGKTLVAAL 308
Query: 552 ACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMI 611
A + I +G Q A M PTE+LA QH + + +++ ++ L G K +
Sbjct: 309 AALLAIDNGKQVALMAPTEILAEQHATNFRRWFESL-----GIEVGWLAGKVKGKARQTE 363
Query: 612 RKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGM 671
+ ++TG + +V+GTH+L ++VEFS L L IVDEQ RFGV QR
Sbjct: 364 LEKIRTGQVQMVVGTHALFQDEVEFSDLALVIVDEQHRFGVHQR---------------- 407
Query: 672 AMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYII 730
M+ G D PH L M+ATPIPRTLA+ +Y D+ + I +LPPGR PI T I
Sbjct: 408 LMLREKGKQADH---YPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPITTVAI 463
>sp|P43809|RECG_HAEIN ATP-dependent DNA helicase RecG OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=recG PE=3 SV=1
Length = 693
Score = 171 bits (434), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 163/544 (29%), Positives = 240/544 (44%), Gaps = 104/544 (19%)
Query: 206 LLDKC-ISCVPGLSKRLYHQLENCGFYTLRKLLHHFPRTYADLQNAQI--DLDDGQYFIF 262
LLD ++ + G+ + ++L G + L+ LL H P Y D + +L QYF
Sbjct: 5 LLDAVPLTSLSGVGAAISNKLAKIGIHNLQDLLFHLPIRYEDRTRITLIANLRPEQYFTI 64
Query: 263 IGEIISSRGMKAGCSFSF-LEVIVGCEIADTETTSGDEVVNIDSGQKKKIYLHLKKFFRG 321
G+ C +F I+ ++D + KI L F G
Sbjct: 65 -------EGIVQTCEVAFGRRPILSVSLSDGTS---------------KIMLRFFNFNAG 102
Query: 322 TRFTSIPFLKSIEGKHKVGEFVCVSGKVRAMRSNNHYEMREYNIDVLKDEDDLSLRAKGR 381
R +VG V G+V+ R EY I ++D + L
Sbjct: 103 MR-----------NSFQVGVRVKAFGEVKRGRHMPEIHHPEYQI--VRDNAPIVLEET-- 147
Query: 382 PYPIYPSKGGLNASLLRDTIARAL---------QALPANFDPVPKEITQEFGLLCLFDAY 432
PIY + GL + LR +AL + LP F+P + + LL
Sbjct: 148 LTPIYSTTEGLKQNSLRKLTDQALALLDKVQIAEILPNEFNPHQYSLKEALRLLHRPPPD 207
Query: 433 MGIH---QPKHIDEADLARKRLIFDEFFYLQLGRLYQMLEGLGTQFEKEGLLDKYRKPRL 489
+ + Q KH A++RLIF+E L Q + LGTQ +
Sbjct: 208 ISLEMLEQGKHP-----AQQRLIFEELLAHNLA--MQKVR-LGTQ-------------QF 246
Query: 490 NAAYMEGWSSLTKKLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVA 549
+A + + L ++ L LP+ T++Q +S+I DL + PM RL+QGDVG GKT+VA
Sbjct: 247 SALPLHYQTDLKQRFLATLPFQPTNAQKRVVSDIEQDLIKDYPMMRLVQGDVGSGKTLVA 306
Query: 550 FLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKP---KIALLTGSTPVK 606
LA + I +G Q A M PTE+LA QH + + KP ++ L G K
Sbjct: 307 ALAALTAIDNGKQVALMAPTEILAEQHANNFRRWF--------KPFGIEVGWLAGKVKGK 358
Query: 607 QSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTS 666
+ + ++TG + +V+GTH+L E+VEFS L L I+DEQ RFGV QR
Sbjct: 359 SRQAELEKIKTGAVQMVVGTHALFQEEVEFSDLALVIIDEQHRFGVHQR----------- 407
Query: 667 MSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIK 726
M+ G + PH L M+ATPIPRTLA+ +Y D+ + I +LPPGR PI
Sbjct: 408 -----LMLREKG---EKAGFYPHQLIMTATPIPRTLAMTVYADLDTSIIDELPPGRTPIT 459
Query: 727 TYII 730
T ++
Sbjct: 460 TVVV 463
>sp|Q5HRQ2|MFD_STAEQ Transcription-repair-coupling factor OS=Staphylococcus epidermidis
(strain ATCC 35984 / RP62A) GN=mfd PE=3 SV=1
Length = 1169
Score = 151 bits (382), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/255 (34%), Positives = 137/255 (53%), Gaps = 29/255 (11%)
Query: 480 LLDKYRKPRLNAAYMEGWSSLTKKLLRA-LPYSLTSSQLSAISEIIWDLKQPVPMNRLLQ 538
L+D Y++ ++ Y G + + PY LT Q +I EI D+++ PM+RLL
Sbjct: 587 LIDLYKEREMSVGYQYGQDTAEQSAFEHDFPYELTPDQSKSIDEIKGDMERARPMDRLLC 646
Query: 539 GDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIAL 598
GDVG GKT VA A + + G Q AF+VPT +LA QHYE LL+ + + +I L
Sbjct: 647 GDVGYGKTEVAVRAAFKAVMDGKQVAFLVPTTILAQQHYETLLERMQDF-----PVEIQL 701
Query: 599 LTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRF 658
++ K+ R ++ L++G + +V+GTH L+ + +++ L L IVDE+QRFGV + R
Sbjct: 702 VSRFRTAKEIRETKEGLKSGYVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERI 761
Query: 659 NSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDL 718
+ N D VL ++ATPIPRTL +++ G L+ I
Sbjct: 762 KT-----------LKKNVD------------VLTLTATPIPRTLHMSMLGVRDLSVIETP 798
Query: 719 PPGRIPIKTYIIEGN 733
P R P++TY++E N
Sbjct: 799 PENRFPVQTYVLEQN 813
>sp|Q8CMT1|MFD_STAES Transcription-repair-coupling factor OS=Staphylococcus epidermidis
(strain ATCC 12228) GN=mfd PE=3 SV=1
Length = 1169
Score = 151 bits (382), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/255 (34%), Positives = 137/255 (53%), Gaps = 29/255 (11%)
Query: 480 LLDKYRKPRLNAAYMEGWSSLTKKLLRA-LPYSLTSSQLSAISEIIWDLKQPVPMNRLLQ 538
L+D Y++ ++ Y G + + PY LT Q +I EI D+++ PM+RLL
Sbjct: 587 LIDLYKEREMSVGYQYGQDTAEQSAFEHDFPYELTPDQSKSIDEIKGDMERARPMDRLLC 646
Query: 539 GDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIAL 598
GDVG GKT VA A + + G Q AF+VPT +LA QHYE LL+ + + +I L
Sbjct: 647 GDVGYGKTEVAVRAAFKAVMDGKQVAFLVPTTILAQQHYETLLERMQDF-----PVEIQL 701
Query: 599 LTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRF 658
++ K+ R ++ L++G + +V+GTH L+ + +++ L L IVDE+QRFGV + R
Sbjct: 702 VSRFRTAKEIRETKEGLKSGYVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERI 761
Query: 659 NSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDL 718
+ N D VL ++ATPIPRTL +++ G L+ I
Sbjct: 762 KT-----------LKKNVD------------VLTLTATPIPRTLHMSMLGVRDLSVIETP 798
Query: 719 PPGRIPIKTYIIEGN 733
P R P++TY++E N
Sbjct: 799 PENRFPVQTYVLEQN 813
>sp|Q5HIH2|MFD_STAAC Transcription-repair-coupling factor OS=Staphylococcus aureus
(strain COL) GN=mfd PE=3 SV=1
Length = 1168
Score = 150 bits (379), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 139/257 (54%), Gaps = 29/257 (11%)
Query: 478 EGLLDKYRKPRLNAAYMEGWSSLTKKLLRA-LPYSLTSSQLSAISEIIWDLKQPVPMNRL 536
E L+D Y++ + Y G + + PY LT Q +I EI D+++ PM+RL
Sbjct: 584 EELIDLYKEREMAEGYQYGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDMQKSRPMDRL 643
Query: 537 LQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKI 596
L GDVG GKT VA A + + G Q AF+VPT +LA QHYE L++ + + +I
Sbjct: 644 LCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDF-----PVEI 698
Query: 597 ALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRG 656
L++ K+ + ++ L+TG + +V+GTH L+++ +++ L L IVDE+QRFGV +
Sbjct: 699 QLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKE 758
Query: 657 RFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQIT 716
R + + N D VL ++ATPIPRTL +++ G L+ I
Sbjct: 759 RIKTLKH-----------NVD------------VLTLTATPIPRTLHMSMLGVRDLSVIE 795
Query: 717 DLPPGRIPIKTYIIEGN 733
P R P++TY++E N
Sbjct: 796 TPPENRFPVQTYVLEQN 812
>sp|Q6GJG8|MFD_STAAR Transcription-repair-coupling factor OS=Staphylococcus aureus
(strain MRSA252) GN=mfd PE=3 SV=1
Length = 1168
Score = 150 bits (379), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 139/257 (54%), Gaps = 29/257 (11%)
Query: 478 EGLLDKYRKPRLNAAYMEGWSSLTKKLLRA-LPYSLTSSQLSAISEIIWDLKQPVPMNRL 536
E L+D Y++ + Y G + + PY LT Q +I EI D+++ PM+RL
Sbjct: 584 EELIDLYKEREMAEGYQYGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDMQKSRPMDRL 643
Query: 537 LQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKI 596
L GDVG GKT VA A + + G Q AF+VPT +LA QHYE L++ + + +I
Sbjct: 644 LCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDF-----PVEI 698
Query: 597 ALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRG 656
L++ K+ + ++ L+TG + +V+GTH L+++ +++ L L IVDE+QRFGV +
Sbjct: 699 QLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKE 758
Query: 657 RFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQIT 716
R + + N D VL ++ATPIPRTL +++ G L+ I
Sbjct: 759 RIKTLKH-----------NVD------------VLTLTATPIPRTLHMSMLGVRDLSVIE 795
Query: 717 DLPPGRIPIKTYIIEGN 733
P R P++TY++E N
Sbjct: 796 TPPENRFPVQTYVLEQN 812
>sp|Q7A7B2|MFD_STAAN Transcription-repair-coupling factor OS=Staphylococcus aureus
(strain N315) GN=mfd PE=1 SV=1
Length = 1168
Score = 150 bits (379), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 139/257 (54%), Gaps = 29/257 (11%)
Query: 478 EGLLDKYRKPRLNAAYMEGWSSLTKKLLRA-LPYSLTSSQLSAISEIIWDLKQPVPMNRL 536
E L+D Y++ + Y G + + PY LT Q +I EI D+++ PM+RL
Sbjct: 584 EELIDLYKEREMAEGYQYGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDMQKSRPMDRL 643
Query: 537 LQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKI 596
L GDVG GKT VA A + + G Q AF+VPT +LA QHYE L++ + + +I
Sbjct: 644 LCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDF-----PVEI 698
Query: 597 ALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRG 656
L++ K+ + ++ L+TG + +V+GTH L+++ +++ L L IVDE+QRFGV +
Sbjct: 699 QLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKE 758
Query: 657 RFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQIT 716
R + + N D VL ++ATPIPRTL +++ G L+ I
Sbjct: 759 RIKTLKH-----------NVD------------VLTLTATPIPRTLHMSMLGVRDLSVIE 795
Query: 717 DLPPGRIPIKTYIIEGN 733
P R P++TY++E N
Sbjct: 796 TPPENRFPVQTYVLEQN 812
>sp|Q99WA0|MFD_STAAM Transcription-repair-coupling factor OS=Staphylococcus aureus
(strain Mu50 / ATCC 700699) GN=mfd PE=1 SV=1
Length = 1168
Score = 150 bits (379), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 139/257 (54%), Gaps = 29/257 (11%)
Query: 478 EGLLDKYRKPRLNAAYMEGWSSLTKKLLRA-LPYSLTSSQLSAISEIIWDLKQPVPMNRL 536
E L+D Y++ + Y G + + PY LT Q +I EI D+++ PM+RL
Sbjct: 584 EELIDLYKEREMAEGYQYGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDMQKSRPMDRL 643
Query: 537 LQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKI 596
L GDVG GKT VA A + + G Q AF+VPT +LA QHYE L++ + + +I
Sbjct: 644 LCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDF-----PVEI 698
Query: 597 ALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRG 656
L++ K+ + ++ L+TG + +V+GTH L+++ +++ L L IVDE+QRFGV +
Sbjct: 699 QLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKE 758
Query: 657 RFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQIT 716
R + + N D VL ++ATPIPRTL +++ G L+ I
Sbjct: 759 RIKTLKH-----------NVD------------VLTLTATPIPRTLHMSMLGVRDLSVIE 795
Query: 717 DLPPGRIPIKTYIIEGN 733
P R P++TY++E N
Sbjct: 796 TPPENRFPVQTYVLEQN 812
>sp|Q2YVY2|MFD_STAAB Transcription-repair-coupling factor OS=Staphylococcus aureus
(strain bovine RF122 / ET3-1) GN=mfd PE=3 SV=1
Length = 1168
Score = 150 bits (379), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 139/257 (54%), Gaps = 29/257 (11%)
Query: 478 EGLLDKYRKPRLNAAYMEGWSSLTKKLLRA-LPYSLTSSQLSAISEIIWDLKQPVPMNRL 536
E L+D Y++ + Y G + + PY LT Q +I EI D+++ PM+RL
Sbjct: 584 EELIDLYKEREMAEGYQYGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDMQKSRPMDRL 643
Query: 537 LQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKI 596
L GDVG GKT VA A + + G Q AF+VPT +LA QHYE L++ + + +I
Sbjct: 644 LCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDF-----PVEI 698
Query: 597 ALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRG 656
L++ K+ + ++ L+TG + +V+GTH L+++ +++ L L IVDE+QRFGV +
Sbjct: 699 QLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKE 758
Query: 657 RFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQIT 716
R + + N D VL ++ATPIPRTL +++ G L+ I
Sbjct: 759 RIKTLKH-----------NVD------------VLTLTATPIPRTLHMSMLGVRDLSVIE 795
Query: 717 DLPPGRIPIKTYIIEGN 733
P R P++TY++E N
Sbjct: 796 TPPENRFPVQTYVLEQN 812
>sp|Q8NXZ6|MFD_STAAW Transcription-repair-coupling factor OS=Staphylococcus aureus
(strain MW2) GN=mfd PE=3 SV=1
Length = 1168
Score = 150 bits (379), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 139/257 (54%), Gaps = 29/257 (11%)
Query: 478 EGLLDKYRKPRLNAAYMEGWSSLTKKLLRA-LPYSLTSSQLSAISEIIWDLKQPVPMNRL 536
E L+D Y++ + Y G + + PY LT Q +I EI D+++ PM+RL
Sbjct: 584 EELIDLYKEREMAEGYQYGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDMQKSRPMDRL 643
Query: 537 LQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKI 596
L GDVG GKT VA A + + G Q AF+VPT +LA QHYE L++ + + +I
Sbjct: 644 LCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDF-----PVEI 698
Query: 597 ALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRG 656
L++ K+ + ++ L+TG + +V+GTH L+++ +++ L L IVDE+QRFGV +
Sbjct: 699 QLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKE 758
Query: 657 RFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQIT 716
R + + N D VL ++ATPIPRTL +++ G L+ I
Sbjct: 759 RIKTLKH-----------NVD------------VLTLTATPIPRTLHMSMLGVRDLSVIE 795
Query: 717 DLPPGRIPIKTYIIEGN 733
P R P++TY++E N
Sbjct: 796 TPPENRFPVQTYVLEQN 812
>sp|Q6GBY5|MFD_STAAS Transcription-repair-coupling factor OS=Staphylococcus aureus
(strain MSSA476) GN=mfd PE=3 SV=1
Length = 1168
Score = 150 bits (379), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 139/257 (54%), Gaps = 29/257 (11%)
Query: 478 EGLLDKYRKPRLNAAYMEGWSSLTKKLLRA-LPYSLTSSQLSAISEIIWDLKQPVPMNRL 536
E L+D Y++ + Y G + + PY LT Q +I EI D+++ PM+RL
Sbjct: 584 EELIDLYKEREMAEGYQYGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDMQKSRPMDRL 643
Query: 537 LQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKI 596
L GDVG GKT VA A + + G Q AF+VPT +LA QHYE L++ + + +I
Sbjct: 644 LCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDF-----PVEI 698
Query: 597 ALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRG 656
L++ K+ + ++ L+TG + +V+GTH L+++ +++ L L IVDE+QRFGV +
Sbjct: 699 QLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKE 758
Query: 657 RFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQIT 716
R + + N D VL ++ATPIPRTL +++ G L+ I
Sbjct: 759 RIKTLKH-----------NVD------------VLTLTATPIPRTLHMSMLGVRDLSVIE 795
Query: 717 DLPPGRIPIKTYIIEGN 733
P R P++TY++E N
Sbjct: 796 TPPENRFPVQTYVLEQN 812
>sp|Q2G0R8|MFD_STAA8 Transcription-repair-coupling factor OS=Staphylococcus aureus
(strain NCTC 8325) GN=mfd PE=3 SV=1
Length = 1168
Score = 150 bits (379), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 139/257 (54%), Gaps = 29/257 (11%)
Query: 478 EGLLDKYRKPRLNAAYMEGWSSLTKKLLRA-LPYSLTSSQLSAISEIIWDLKQPVPMNRL 536
E L+D Y++ + Y G + + PY LT Q +I EI D+++ PM+RL
Sbjct: 584 EELIDLYKEREMAEGYQYGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDMQKSRPMDRL 643
Query: 537 LQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKI 596
L GDVG GKT VA A + + G Q AF+VPT +LA QHYE L++ + + +I
Sbjct: 644 LCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDF-----PVEI 698
Query: 597 ALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRG 656
L++ K+ + ++ L+TG + +V+GTH L+++ +++ L L IVDE+QRFGV +
Sbjct: 699 QLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKE 758
Query: 657 RFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQIT 716
R + + N D VL ++ATPIPRTL +++ G L+ I
Sbjct: 759 RIKTLKH-----------NVD------------VLTLTATPIPRTLHMSMLGVRDLSVIE 795
Query: 717 DLPPGRIPIKTYIIEGN 733
P R P++TY++E N
Sbjct: 796 TPPENRFPVQTYVLEQN 812
>sp|Q2FJD8|MFD_STAA3 Transcription-repair-coupling factor OS=Staphylococcus aureus
(strain USA300) GN=mfd PE=3 SV=1
Length = 1168
Score = 150 bits (379), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 139/257 (54%), Gaps = 29/257 (11%)
Query: 478 EGLLDKYRKPRLNAAYMEGWSSLTKKLLRA-LPYSLTSSQLSAISEIIWDLKQPVPMNRL 536
E L+D Y++ + Y G + + PY LT Q +I EI D+++ PM+RL
Sbjct: 584 EELIDLYKEREMAEGYQYGEDTAEQTTFELDFPYELTPDQAKSIDEIKDDMQKSRPMDRL 643
Query: 537 LQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKI 596
L GDVG GKT VA A + + G Q AF+VPT +LA QHYE L++ + + +I
Sbjct: 644 LCGDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDF-----PVEI 698
Query: 597 ALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRG 656
L++ K+ + ++ L+TG + +V+GTH L+++ +++ L L IVDE+QRFGV +
Sbjct: 699 QLMSRFRTPKEIKQTKEGLKTGFVDIVVGTHKLLSKDIQYKDLGLLIVDEEQRFGVRHKE 758
Query: 657 RFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQIT 716
R + + N D VL ++ATPIPRTL +++ G L+ I
Sbjct: 759 RIKTLKH-----------NVD------------VLTLTATPIPRTLHMSMLGVRDLSVIE 795
Query: 717 DLPPGRIPIKTYIIEGN 733
P R P++TY++E N
Sbjct: 796 TPPENRFPVQTYVLEQN 812
>sp|Q4L3G0|MFD_STAHJ Transcription-repair-coupling factor OS=Staphylococcus haemolyticus
(strain JCSC1435) GN=mfd PE=3 SV=1
Length = 1169
Score = 147 bits (370), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 86/255 (33%), Positives = 135/255 (52%), Gaps = 29/255 (11%)
Query: 480 LLDKYRKPRLNAAYMEGWSSLTKKLLRA-LPYSLTSSQLSAISEIIWDLKQPVPMNRLLQ 538
L+ Y++ ++ Y G + + PY LT Q +I EI D+++ PM+RLL
Sbjct: 587 LIALYKEREMSVGYQYGEDTAEQSAFEMDFPYELTPDQAKSIDEIKGDMERERPMDRLLC 646
Query: 539 GDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIAL 598
GDVG GKT VA A + + G Q AF+VPT +LA QHYE L++ + + +I L
Sbjct: 647 GDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDF-----PVQIEL 701
Query: 599 LTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRF 658
++ K+ + ++ L++G + +V+GTH L+ + + + L L IVDE+QRFGV + R
Sbjct: 702 ISRFRSTKEVKETKEGLKSGYVDIVVGTHKLLGKDIHYKDLGLLIVDEEQRFGVRHKERI 761
Query: 659 NSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDL 718
+ N D VL ++ATPIPRTL +++ G L+ I
Sbjct: 762 KT-----------MKTNVD------------VLTLTATPIPRTLHMSMLGVRDLSVIETP 798
Query: 719 PPGRIPIKTYIIEGN 733
P R P++TY++E N
Sbjct: 799 PENRFPVQTYVLEQN 813
>sp|P37474|MFD_BACSU Transcription-repair-coupling factor OS=Bacillus subtilis (strain
168) GN=mfd PE=3 SV=1
Length = 1177
Score = 144 bits (364), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/234 (36%), Positives = 124/234 (52%), Gaps = 28/234 (11%)
Query: 500 LTKKLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGS 559
+ ++ A PY T QL +I EI D+++ PM+RLL GDVG GKT VA A + IG
Sbjct: 612 MQREFESAFPYQETEDQLRSIHEIKKDMERERPMDRLLCGDVGYGKTEVAIRAAFKAIGD 671
Query: 560 GYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGD 619
G Q A +VPT +LA QHYE + + + + I LL+ K++ K L+ G
Sbjct: 672 GKQVALLVPTTILAQQHYETIKERFQD-----YPINIGLLSRFRTRKEANETIKGLKNGT 726
Query: 620 ITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGS 679
+ +VIGTH L+++ V + L L I+DE+QRFGV + + N D
Sbjct: 727 VDIVIGTHRLLSKDVVYKDLGLLIIDEEQRFGVTHKEKIKQ-----------IKANVD-- 773
Query: 680 PKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGN 733
VL ++ATPIPRTL +++ G L+ I P R P++TY++E N
Sbjct: 774 ----------VLTLTATPIPRTLHMSMLGVRDLSVIETPPENRFPVQTYVVEYN 817
>sp|Q49V12|MFD_STAS1 Transcription-repair-coupling factor OS=Staphylococcus
saprophyticus subsp. saprophyticus (strain ATCC 15305 /
DSM 20229) GN=mfd PE=3 SV=1
Length = 1170
Score = 144 bits (362), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 86/255 (33%), Positives = 135/255 (52%), Gaps = 29/255 (11%)
Query: 480 LLDKYRKPRLNAAYMEGWSSLTKKLLRA-LPYSLTSSQLSAISEIIWDLKQPVPMNRLLQ 538
L++ Y+ ++ Y G + + PY LT Q +I EI D++ PM+RLL
Sbjct: 588 LIELYKAREMSVGYKFGPDTAEQNDFEIDFPYELTPDQSKSIEEIKQDMEIERPMDRLLC 647
Query: 539 GDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIAL 598
GDVG GKT VA A + + G Q AF+VPT +LA QHYE L++ + + ++ L
Sbjct: 648 GDVGYGKTEVAVRAAFKAVMEGKQVAFLVPTTILAQQHYETLIERMQDF-----PIEVQL 702
Query: 599 LTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRF 658
++ K+ + ++ L++G + +V+GTH L+ + +++ L L IVDE+QRFGV + R
Sbjct: 703 ISRFRTTKEVKETKEGLKSGFVDIVVGTHKLLGKDIQYKDLGLLIVDEEQRFGVRHKERI 762
Query: 659 NSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDL 718
S N D VL ++ATPIPRTL +++ G L+ I
Sbjct: 763 KS-----------LKNNVD------------VLTLTATPIPRTLHMSMLGVRDLSVIETP 799
Query: 719 PPGRIPIKTYIIEGN 733
P R P++TY++E N
Sbjct: 800 PENRFPVQTYVLEQN 814
>sp|Q4UMJ0|MFD_RICFE Transcription-repair-coupling factor OS=Rickettsia felis (strain
ATCC VR-1525 / URRWXCal2) GN=mfd PE=3 SV=1
Length = 1142
Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 125/232 (53%), Gaps = 32/232 (13%)
Query: 503 KLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGY- 561
K P+S T QL+AI++I DL+ + M+RL+ GDVG GKT VA A V S
Sbjct: 569 KFCANFPFSETEDQLTAINDIKEDLRNGMLMDRLICGDVGFGKTEVAMRAVFMVAKSLNE 628
Query: 562 ---QAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTG 618
Q A +VPT +L +QH+ ++ + I L+ K++++IR +L++G
Sbjct: 629 HLPQVAVVVPTTILCSQHFSRFIERFKGFGLN-----IKQLSSVISAKEAKIIRSELESG 683
Query: 619 DITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDG 678
I ++IGTHSL+ + +F L+L I+DE+Q FGV Q K + S+ S
Sbjct: 684 KINIIIGTHSLLHKNTKFFNLKLLIIDEEQHFGVGQ------KEFLKSLKS--------- 728
Query: 679 SPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYII 730
+ HVLAMSATPIPRTL +++ G L+ I P R+ ++T ++
Sbjct: 729 --------SSHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVRTMVM 772
>sp|Q92H58|MFD_RICCN Transcription-repair-coupling factor OS=Rickettsia conorii (strain
ATCC VR-613 / Malish 7) GN=mfd PE=3 SV=1
Length = 1122
Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/232 (35%), Positives = 124/232 (53%), Gaps = 32/232 (13%)
Query: 503 KLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGY- 561
K P+S T QL AI++I DL+ + M+RL+ GDVG GKT VA A V S
Sbjct: 570 KFCANFPFSETEDQLIAINDIKEDLRNGMLMDRLICGDVGFGKTEVAMRAVFMVAKSLNE 629
Query: 562 ---QAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTG 618
Q A +VPT +L +QH+ ++ + I L+ K++++IR +L++G
Sbjct: 630 HLPQVAVVVPTTILCSQHFSRFIERFKGFGLN-----IKQLSSVISSKEAKIIRSELESG 684
Query: 619 DITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDG 678
I ++IGTHSL+ + ++F L+L I+DE+Q FGV Q K + S+ S
Sbjct: 685 KINIIIGTHSLLHKNIKFFNLKLLIIDEEQHFGVGQ------KEFLKSLKS--------- 729
Query: 679 SPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYII 730
+ HVLAMSATPIPRTL +++ G L+ I P R+ + T ++
Sbjct: 730 --------SSHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVHTSVM 773
>sp|Q1RI82|MFD_RICBR Transcription-repair-coupling factor OS=Rickettsia bellii (strain
RML369-C) GN=mfd PE=3 SV=1
Length = 1120
Score = 127 bits (319), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 80/232 (34%), Positives = 125/232 (53%), Gaps = 32/232 (13%)
Query: 503 KLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGS--- 559
K P++ T QL+AI++I DL + M+RL+ GDVG GKT VA A V S
Sbjct: 568 KFCAKFPFTETEDQLNAINDIREDLSNGMLMDRLICGDVGFGKTEVAMRAAFMVAKSLNE 627
Query: 560 -GYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTG 618
Q A +VPT +L +QH+ + + + + I L+ K+++++R +L++G
Sbjct: 628 NSPQVAVVVPTTILCSQHFARFTERFKDSDLN-----IKQLSSVVSSKEAKIVRSELESG 682
Query: 619 DITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDG 678
I ++IGTHSL+ + +F L+L I+DE+Q FGV Q K + S+ S
Sbjct: 683 KINIIIGTHSLLHKVTKFCNLKLLIIDEEQHFGVGQ------KEFLKSLKS--------- 727
Query: 679 SPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYII 730
+ HVLAMSATPIPRTL +++ G L+ I P R+ ++T ++
Sbjct: 728 --------STHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVRTSVM 771
>sp|P45128|MFD_HAEIN Transcription-repair-coupling factor OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=mfd PE=3
SV=1
Length = 1146
Score = 125 bits (315), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 78/228 (34%), Positives = 119/228 (52%), Gaps = 28/228 (12%)
Query: 507 ALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFM 566
P+ T Q AI+ +I D+ QP M+RL+ GDVG GKT VA A + + Q A +
Sbjct: 598 TFPFEETYDQEMAINAVISDMCQPKAMDRLVCGDVGFGKTEVAMRAAFLAVMNHKQVAVL 657
Query: 567 VPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGT 626
VPT LLA QHYE+ N+ + + +L+ K+ + I ++L G + ++IGT
Sbjct: 658 VPTTLLAQQHYENFKDRFANLPVN-----VEVLSRFKTAKEQKQILENLAEGKVDILIGT 712
Query: 627 HSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHM 686
H LI V+F+ L L I+DE+ RFGV Q+ + N D
Sbjct: 713 HKLIQSDVKFNDLGLLIIDEEHRFGVGQKEKIKQ-----------LRANID--------- 752
Query: 687 APHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNE 734
+L ++ATPIPRTL +A+ G L+ I+ P R+ IKT++ + ++
Sbjct: 753 ---ILTLTATPIPRTLNMAMNGIRDLSIISTPPARRLSIKTFVRQNDD 797
>sp|Q9AKD5|MFD_RICTY Transcription-repair-coupling factor OS=Rickettsia typhi (strain
ATCC VR-144 / Wilmington) GN=mfd PE=3 SV=1
Length = 1120
Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 122/232 (52%), Gaps = 32/232 (13%)
Query: 503 KLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGY- 561
K P+ T QL+AI++I DL + M+RL+ GDVG GKT VA A V S
Sbjct: 568 KFCANFPFIETEDQLTAINDIRKDLTNGMLMDRLICGDVGFGKTEVAMRAVFMVAKSLNE 627
Query: 562 ---QAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTG 618
Q A +VPT +L +QH+ ++ + I L+ +++ +IR +L +G
Sbjct: 628 YLPQVAVVVPTTILCSQHFSRFIERFKGFGLN-----IKQLSSVVSSQEANIIRLELASG 682
Query: 619 DITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDG 678
I ++IGTH+L+ + ++F L+L I+DE+Q FGV Q+ F L Y+S
Sbjct: 683 KINIIIGTHTLLHKNIKFFNLKLLIIDEEQHFGVSQK-EFLKSLKYSS------------ 729
Query: 679 SPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYII 730
HVLAMSATPIPRTL ++L G L+ I P R+ ++T ++
Sbjct: 730 ----------HVLAMSATPIPRTLQMSLTGLKELSIIATPPLNRLEVRTSVM 771
>sp|O05955|MFD_RICPR Transcription-repair-coupling factor OS=Rickettsia prowazekii
(strain Madrid E) GN=mfd PE=3 SV=2
Length = 1120
Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 81/232 (34%), Positives = 122/232 (52%), Gaps = 32/232 (13%)
Query: 503 KLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGY- 561
K P+S T QL+AI++I DL + M+RL+ GDVG GKT VA A V S
Sbjct: 568 KFCANFPFSETEDQLTAINDIREDLTNGMLMDRLICGDVGFGKTEVAMRAVFMVAKSLNE 627
Query: 562 ---QAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTG 618
Q A +VPT +L +QH+ ++ + I L+ K++ +IR +L +G
Sbjct: 628 YLPQVAVVVPTTILCSQHFSRFIERFKGFGLN-----IKQLSSVISSKEANIIRLELASG 682
Query: 619 DITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDG 678
I ++IGTH+L+ + +F L+L I+DE+Q FGV Q K + S+ S
Sbjct: 683 KINIIIGTHALLHKNTKFFNLKLLIIDEEQHFGVSQ------KEFLKSLKS--------- 727
Query: 679 SPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYII 730
+ HVLAMSATPIPRTL +++ G L+ I P R+ ++T ++
Sbjct: 728 --------STHVLAMSATPIPRTLQMSMTGLKELSIIATPPLNRLEVRTSVM 771
>sp|O50224|RECG_THIFE ATP-dependent DNA helicase RecG OS=Thiobacillus ferrooxidans
GN=recG PE=3 SV=1
Length = 652
Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 136/501 (27%), Positives = 207/501 (41%), Gaps = 97/501 (19%)
Query: 207 LDKCISCVPGLSKRLYHQLENCGFYTLRKLLHHFPRTYADLQN--AQIDLDDGQYFIFIG 264
L +S + G+ L +L++ + ++ +L H P Y D ++ + L GQ +G
Sbjct: 32 LQSSVSALRGVGPALVPRLQHMDLWRVQDVLFHLPSRYQDRRHIASMATLQAGQECAILG 91
Query: 265 EIISSRGMKAGCSFSFLEVIVGCEIADTETTSGDEVVNIDSGQKKKIYLHLKKFFRGTRF 324
EI+ + G + V G SG+ + H+ R
Sbjct: 92 EIVRVDHQRGGREQWLVTVSDG------------------SGRLQIRLFHMTVALRA--- 130
Query: 325 TSIPFLKSIEGKHKVGEFVCVSGKVRAMRSNNHYEMREYNIDVLKDEDDLSLRAKGRPYP 384
+ +VG + G++R E+ + D +A P
Sbjct: 131 -----------QWQVGRRLWCFGELRGGFHGLEMIHPEWQM-----ADVPQFQAPRHLTP 174
Query: 385 IYPSKGGLNASLLRDTIARALQALPANFDPVPKEITQEF-----GLLCLFDAYMGIHQPK 439
YPS G+ + R +A+AL L D + + ++ GL L ++ I P+
Sbjct: 175 FYPSSEGITQAQWRRWMAQALTLLDQLPDYLENRLPPQWPGLREGLRLLHESADEIPSPQ 234
Query: 440 HIDEADLARKRLIFDEFF--YLQLGRLYQMLEGLGTQFEKEGLLDKYRKPRLNAAYMEGW 497
H A +RL +E +L + R+ Q G++ NA +
Sbjct: 235 HP-----AWQRLALEELLANHLAVRRMRQ-----------SGMMQ-------NAPCLRSK 271
Query: 498 SSLTKKLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVI 557
L + L LP+S T +Q I+EI DL + PM RLLQGDVG GKT+VA A + +
Sbjct: 272 GQLWHRFLAHLPFSPTMAQERVIAEINADLVRHRPMRRLLQGDVGSGKTLVAAAATLTAL 331
Query: 558 GSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQT 617
+GYQ A M PTE+LA Q + + L+ + + + L GS + R + L
Sbjct: 332 EAGYQVAMMAPTEILAEQLHARFQQWLEPLGLE-----VGYLVGSRSPRARRETAETLAG 386
Query: 618 GDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSD 677
G + LVIGT SL E V F+ L L I+DEQ RFGV QR + K AM
Sbjct: 387 GSLRLVIGTQSLFQEGVVFACLGLVIIDEQHRFGVEQRRQLLEK---------GAM---- 433
Query: 678 GSPKDDQHMAPHVLAMSATPI 698
PH+L M+ATPI
Sbjct: 434 ----------PHLLVMTATPI 444
>sp|P64326|MFD_MYCTU Transcription-repair-coupling factor OS=Mycobacterium tuberculosis
GN=mfd PE=1 SV=1
Length = 1234
Score = 124 bits (311), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 115/229 (50%), Gaps = 28/229 (12%)
Query: 507 ALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFM 566
A ++ T QL+AI E+ D+++P+PM+R++ GDVG GKT +A A + + G Q A +
Sbjct: 644 AFGFTETVDQLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVL 703
Query: 567 VPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGT 626
VPT LLA QH + + + I L+ T +SR + L G + +VIGT
Sbjct: 704 VPTTLLADQHLQTFGERMSGF-----PVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGT 758
Query: 627 HSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHM 686
H L+ V + L L +VDE+QRFGV + S +
Sbjct: 759 HRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVD-------------------- 798
Query: 687 APHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNEK 735
VL MSATPIPRTL ++L G ++ I P R P+ TY+ ++K
Sbjct: 799 ---VLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDK 844
>sp|P64327|MFD_MYCBO Transcription-repair-coupling factor OS=Mycobacterium bovis (strain
ATCC BAA-935 / AF2122/97) GN=mfd PE=3 SV=1
Length = 1234
Score = 124 bits (311), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 115/229 (50%), Gaps = 28/229 (12%)
Query: 507 ALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFM 566
A ++ T QL+AI E+ D+++P+PM+R++ GDVG GKT +A A + + G Q A +
Sbjct: 644 AFGFTETVDQLTAIEEVKADMEKPIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVL 703
Query: 567 VPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGT 626
VPT LLA QH + + + I L+ T +SR + L G + +VIGT
Sbjct: 704 VPTTLLADQHLQTFGERMSGF-----PVTIKGLSRFTDAAESRAVIDGLADGSVDIVIGT 758
Query: 627 HSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHM 686
H L+ V + L L +VDE+QRFGV + S +
Sbjct: 759 HRLLQTGVRWKDLGLVVVDEEQRFGVEHKEHIKSLRTHVD-------------------- 798
Query: 687 APHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNEK 735
VL MSATPIPRTL ++L G ++ I P R P+ TY+ ++K
Sbjct: 799 ---VLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDK 844
>sp|P30958|MFD_ECOLI Transcription-repair-coupling factor OS=Escherichia coli (strain
K12) GN=mfd PE=1 SV=2
Length = 1148
Score = 123 bits (309), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 114/225 (50%), Gaps = 28/225 (12%)
Query: 507 ALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFM 566
+ P+ T Q AI+ ++ D+ QP+ M+RL+ GDVG GKT VA A + + Q A +
Sbjct: 596 SFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVL 655
Query: 567 VPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGT 626
VPT LLA QHY++ N +I +++ K+ I ++ G I ++IGT
Sbjct: 656 VPTTLLAQQHYDNFRDRFANW-----PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGT 710
Query: 627 HSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHM 686
H L+ V+F L L IVDE+ RFGV + R + N D
Sbjct: 711 HKLLQSDVKFKDLGLLIVDEEHRFGVRHKERIKA-----------MRANVD--------- 750
Query: 687 APHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIE 731
+L ++ATPIPRTL +A+ G L+ I P R+ +KT++ E
Sbjct: 751 ---ILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVRE 792
>sp|P57381|MFD_BUCAI Transcription-repair-coupling factor OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=mfd PE=3 SV=1
Length = 812
Score = 123 bits (308), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 76/222 (34%), Positives = 116/222 (52%), Gaps = 28/222 (12%)
Query: 510 YSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPT 569
+ TS Q + ++ D+ +P+PM+RL+ GDVG GKT +A A + + Q A +VPT
Sbjct: 264 FKTTSDQNEVMKFVLKDMSKPIPMDRLICGDVGFGKTEIAMRASFLAVSNKKQVAILVPT 323
Query: 570 ELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSL 629
LLA QHY++ N + I +L+ K+ +I K + G I ++IGTH L
Sbjct: 324 TLLAQQHYKNFKIRFSNWPVN-----INILSRFQTQKEQDLIFKHTKNGRINIIIGTHKL 378
Query: 630 IAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPH 689
+ + +E+ +L L I+DE+ RFGV + K+Y N D
Sbjct: 379 LFKNIEWCSLGLLIIDEEHRFGVSHK-EIIKKIY----------SNID------------ 415
Query: 690 VLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIE 731
+L ++ATPIPRTL +A+ G L+ I P R+ IKT+I E
Sbjct: 416 ILTLTATPIPRTLNMAMTGIKDLSIIAKPPAQRLAIKTFIQE 457
>sp|Q55750|MFD_SYNY3 Transcription-repair-coupling factor OS=Synechocystis sp. (strain
PCC 6803 / Kazusa) GN=mfd PE=3 SV=1
Length = 1199
Score = 122 bits (305), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/236 (34%), Positives = 122/236 (51%), Gaps = 35/236 (14%)
Query: 498 SSLTKKLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVI 557
S ++L + PY T QL A+ ++ DL+ PM+RL+ GDVG GKT VA A + +
Sbjct: 632 SPWQQELEDSFPYQPTPDQLKAVQDVKRDLEGDRPMDRLVCGDVGFGKTEVAVRAIFKAV 691
Query: 558 GSG-YQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKP---KIALLTGSTPVKQSRMIRK 613
SG Q A + PT +L QHY H LK ++ P I LL + + I
Sbjct: 692 TSGNKQVALLAPTTVLTQQHY-HTLK-------ERFAPYPITIGLLNRFRTASEKKEILA 743
Query: 614 DLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAM 673
L++G++ +V+GT ++ V+F L L ++DE+QRFGV Q+ + K T +
Sbjct: 744 KLKSGELDIVVGTQQVLGTSVKFKDLGLLVIDEEQRFGVNQKEKI--KTLKTEVD----- 796
Query: 674 VNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYI 729
VL ++ATPIPRTL ++L G ++ IT PP R PIKT++
Sbjct: 797 ----------------VLTLTATPIPRTLYMSLSGIREMSLITTPPPSRRPIKTHL 836
>sp|Q89AK2|MFD_BUCBP Transcription-repair-coupling factor OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=mfd PE=3 SV=1
Length = 697
Score = 116 bits (291), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 72/224 (32%), Positives = 115/224 (51%), Gaps = 28/224 (12%)
Query: 508 LPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMV 567
P++LT Q SAI+ ++ D+ + PM+RL+ GDVG GKT VA A + + Q A +V
Sbjct: 150 FPFTLTPDQDSAINSVLSDMYKSTPMDRLVCGDVGFGKTEVAMRATFLAVCNQKQVAILV 209
Query: 568 PTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTH 627
PT LLA QH+ + + KI +L+ + I ++ G++ ++IGTH
Sbjct: 210 PTTLLAQQHFNNF-----TLRFKYWSTKIEILSRFQSETKCNEIINNVNIGNVHVLIGTH 264
Query: 628 SLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMA 687
++ + +++ L L IVDE+ RFGV + + KL ++
Sbjct: 265 KILLKNLKWKNLGLLIVDEEHRFGVHHKEQI--KLISNNID------------------- 303
Query: 688 PHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIE 731
VL ++ATPIPRTL +A G L+ I P R+ +KT++ E
Sbjct: 304 --VLTLTATPIPRTLNMAFVGIRDLSIIATPPKQRLIVKTFVRE 345
>sp|Q9ZJ57|MFD_HELPJ Transcription-repair-coupling factor OS=Helicobacter pylori (strain
J99) GN=mfd PE=3 SV=1
Length = 1001
Score = 116 bits (290), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 77/226 (34%), Positives = 113/226 (50%), Gaps = 30/226 (13%)
Query: 510 YSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPT 569
+ TS Q AI+EI DL M+RLL GDVG GKT VA A +G+Q+A +VPT
Sbjct: 483 FEYTSDQEKAIAEISRDLSSHRVMDRLLSGDVGFGKTEVAMHAIFCAFLNGFQSALVVPT 542
Query: 570 ELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSL 629
LLA QH+E L +N K+A L + + K ++ G + ++IGTH++
Sbjct: 543 TLLAHQHFETLKARFENF-----GVKVARLDRYIKTSEKSKLLKAVELGLVDVLIGTHAI 597
Query: 630 IAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPH 689
+ K F L L +VDE+ +FGV Q+ + + H
Sbjct: 598 LGTK--FKNLGLMVVDEEHKFGVKQKEALK-----------------------ELSKSVH 632
Query: 690 VLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNEK 735
L+MSATPIPRTL +AL ++ + P R P +T++ E N++
Sbjct: 633 FLSMSATPIPRTLNMALSQIKGISSLKTPPTDRKPSRTFLKEKNDE 678
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 274,867,902
Number of Sequences: 539616
Number of extensions: 11853131
Number of successful extensions: 28972
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 28737
Number of HSP's gapped (non-prelim): 116
length of query: 742
length of database: 191,569,459
effective HSP length: 125
effective length of query: 617
effective length of database: 124,117,459
effective search space: 76580472203
effective search space used: 76580472203
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)