Query 045263
Match_columns 742
No_of_seqs 370 out of 2742
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 20:18:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045263.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045263hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gm5_A RECG; helicase, replica 100.0 5.8E-72 2E-76 664.8 40.6 447 206-734 112-563 (780)
2 2eyq_A TRCF, transcription-rep 100.0 3.5E-28 1.2E-32 300.9 28.6 212 496-735 588-799 (1151)
3 3ly5_A ATP-dependent RNA helic 99.9 3.5E-22 1.2E-26 208.5 20.2 174 498-706 63-251 (262)
4 3fe2_A Probable ATP-dependent 99.9 5.2E-22 1.8E-26 204.0 20.9 172 500-705 39-225 (242)
5 3oiy_A Reverse gyrase helicase 99.9 7E-23 2.4E-27 226.0 12.6 142 498-651 8-152 (414)
6 1vec_A ATP-dependent RNA helic 99.9 3.1E-21 1.1E-25 192.1 20.3 175 498-705 12-195 (206)
7 1t6n_A Probable ATP-dependent 99.9 2.2E-21 7.5E-26 195.7 19.1 175 498-705 23-208 (220)
8 2pl3_A Probable ATP-dependent 99.9 3.5E-21 1.2E-25 196.6 20.2 173 498-706 34-221 (236)
9 3bor_A Human initiation factor 99.9 1.5E-21 5E-26 200.2 16.5 175 498-706 39-223 (237)
10 3iuy_A Probable ATP-dependent 99.9 4.6E-21 1.6E-25 194.6 19.5 172 499-706 30-217 (228)
11 2oxc_A Probable ATP-dependent 99.9 3.8E-21 1.3E-25 196.1 17.8 169 502-706 36-216 (230)
12 1qde_A EIF4A, translation init 99.9 5.6E-21 1.9E-25 193.0 17.7 173 498-706 23-205 (224)
13 1wrb_A DJVLGB; RNA helicase, D 99.9 7.4E-21 2.5E-25 196.3 18.9 171 506-706 39-228 (253)
14 3ber_A Probable ATP-dependent 99.9 1.5E-20 5E-25 194.8 20.8 171 501-705 54-235 (249)
15 1q0u_A Bstdead; DEAD protein, 99.9 4.4E-21 1.5E-25 193.8 16.1 174 498-702 13-196 (219)
16 2gxq_A Heat resistant RNA depe 99.9 1.7E-20 5.7E-25 186.8 20.0 172 498-705 10-193 (207)
17 3dkp_A Probable ATP-dependent 99.9 1.8E-21 6E-26 199.8 12.5 167 505-703 44-226 (245)
18 2db3_A ATP-dependent RNA helic 99.8 8.8E-20 3E-24 203.7 24.4 174 501-706 67-255 (434)
19 3fmo_B ATP-dependent RNA helic 99.8 1.6E-20 5.4E-25 200.2 15.8 175 498-707 101-287 (300)
20 4ddu_A Reverse gyrase; topoiso 99.8 6.7E-21 2.3E-25 234.8 14.6 141 500-652 67-210 (1104)
21 2i4i_A ATP-dependent RNA helic 99.8 1.7E-19 5.9E-24 197.7 22.2 203 499-731 25-256 (417)
22 3eiq_A Eukaryotic initiation f 99.8 1.5E-19 5.1E-24 197.8 21.2 175 501-707 51-234 (414)
23 2oca_A DAR protein, ATP-depend 99.8 5E-20 1.7E-24 208.8 16.5 151 509-699 111-264 (510)
24 1s2m_A Putative ATP-dependent 99.8 4.1E-19 1.4E-23 193.9 22.2 174 498-705 30-212 (400)
25 1fuu_A Yeast initiation factor 99.8 2.5E-19 8.6E-24 194.4 19.9 172 498-705 30-211 (394)
26 2j0s_A ATP-dependent RNA helic 99.8 1.8E-19 6.3E-24 197.5 18.8 173 499-705 47-228 (410)
27 2z0m_A 337AA long hypothetical 99.8 4E-19 1.4E-23 188.4 20.3 165 503-705 7-178 (337)
28 1hv8_A Putative ATP-dependent 99.8 7.7E-19 2.6E-23 188.2 22.1 173 498-705 15-196 (367)
29 1xti_A Probable ATP-dependent 99.8 2.7E-19 9.1E-24 194.3 18.6 172 499-703 18-200 (391)
30 3pey_A ATP-dependent RNA helic 99.8 5.7E-19 1.9E-23 191.1 20.9 198 498-732 14-224 (395)
31 3tbk_A RIG-I helicase domain; 99.8 2.6E-19 8.8E-24 202.9 17.0 163 509-699 2-176 (555)
32 3l9o_A ATP-dependent RNA helic 99.8 2.1E-19 7.1E-24 221.6 17.0 185 503-731 176-367 (1108)
33 4a2p_A RIG-I, retinoic acid in 99.8 3.1E-19 1.1E-23 202.7 16.4 130 508-652 4-144 (556)
34 2xgj_A ATP-dependent RNA helic 99.8 4.7E-19 1.6E-23 216.6 18.5 180 505-731 80-269 (1010)
35 3fht_A ATP-dependent RNA helic 99.8 1E-18 3.4E-23 190.8 18.9 200 499-732 35-247 (412)
36 1rif_A DAR protein, DNA helica 99.8 4.8E-19 1.6E-23 186.1 15.4 149 510-698 112-263 (282)
37 3i5x_A ATP-dependent RNA helic 99.8 8.2E-19 2.8E-23 201.2 18.2 178 505-705 87-282 (563)
38 3fmp_B ATP-dependent RNA helic 99.8 4.5E-19 1.6E-23 199.5 15.5 174 498-706 101-286 (479)
39 3sqw_A ATP-dependent RNA helic 99.8 1.4E-18 4.8E-23 200.7 18.5 181 502-705 33-231 (579)
40 4a4z_A Antiviral helicase SKI2 99.8 4.1E-19 1.4E-23 217.0 13.4 191 496-731 24-224 (997)
41 3b6e_A Interferon-induced heli 99.8 8.8E-19 3E-23 174.7 11.9 130 507-652 29-176 (216)
42 1wp9_A ATP-dependent RNA helic 99.8 4.4E-18 1.5E-22 187.6 18.3 153 510-698 8-167 (494)
43 1oyw_A RECQ helicase, ATP-depe 99.8 9.5E-18 3.3E-22 192.0 21.4 199 498-732 11-220 (523)
44 2v1x_A ATP-dependent DNA helic 99.8 1.8E-17 6.1E-22 192.4 22.8 198 498-731 30-245 (591)
45 2ykg_A Probable ATP-dependent 99.8 4.5E-18 1.6E-22 199.8 18.0 131 506-651 7-149 (696)
46 4a2q_A RIG-I, retinoic acid in 99.8 4.9E-18 1.7E-22 203.5 17.2 161 509-698 246-418 (797)
47 2fwr_A DNA repair protein RAD2 99.8 2.2E-18 7.4E-23 193.5 12.9 137 508-698 90-229 (472)
48 2va8_A SSO2462, SKI2-type heli 99.8 4.2E-18 1.4E-22 201.4 15.5 173 499-708 17-197 (715)
49 2p6r_A Afuhel308 helicase; pro 99.8 1.7E-18 5.9E-23 204.5 11.8 172 502-707 15-193 (702)
50 2zj8_A DNA helicase, putative 99.7 2E-18 6.7E-23 204.5 11.4 171 500-707 11-190 (720)
51 3fho_A ATP-dependent RNA helic 99.7 3.3E-18 1.1E-22 194.8 12.6 188 506-729 135-335 (508)
52 4gl2_A Interferon-induced heli 99.7 2.8E-18 9.7E-23 201.6 11.2 128 508-651 4-149 (699)
53 1gku_B Reverse gyrase, TOP-RG; 99.7 4.3E-18 1.5E-22 209.5 12.2 138 499-651 45-188 (1054)
54 2fz4_A DNA repair protein RAD2 99.7 1.2E-17 4E-22 172.1 13.3 138 508-699 90-230 (237)
55 4a2w_A RIG-I, retinoic acid in 99.7 2.3E-17 8E-22 200.9 14.2 130 509-653 246-386 (936)
56 2ipc_A Preprotein translocase 99.7 1.6E-17 5.5E-22 195.4 11.5 164 504-722 72-250 (997)
57 4f92_B U5 small nuclear ribonu 99.7 2.2E-17 7.7E-22 210.6 13.0 171 510-709 77-267 (1724)
58 4f92_B U5 small nuclear ribonu 99.7 1.6E-16 5.4E-21 202.9 18.3 167 510-709 924-1106(1724)
59 2v6i_A RNA helicase; membrane, 99.7 1E-16 3.4E-21 179.2 13.4 141 533-728 3-151 (431)
60 3h1t_A Type I site-specific re 99.7 1.6E-16 5.4E-21 183.7 11.0 145 510-699 177-343 (590)
61 3llm_A ATP-dependent RNA helic 99.7 8.8E-16 3E-20 157.2 14.9 163 507-708 57-229 (235)
62 2fsf_A Preprotein translocase 99.6 4E-15 1.4E-19 175.4 14.3 129 504-651 67-207 (853)
63 3dmq_A RNA polymerase-associat 99.6 1.5E-15 5.2E-20 185.4 9.3 156 508-699 150-318 (968)
64 1tf5_A Preprotein translocase 99.6 9.2E-15 3.1E-19 172.7 15.4 128 505-651 77-216 (844)
65 1z63_A Helicase of the SNF2/RA 99.5 1.3E-14 4.4E-19 163.9 12.1 152 508-701 34-191 (500)
66 2wv9_A Flavivirin protease NS2 99.5 2.3E-15 7.9E-20 176.9 6.0 162 511-729 215-391 (673)
67 1nkt_A Preprotein translocase 99.5 2.6E-14 8.8E-19 168.9 14.4 130 503-651 103-244 (922)
68 1yks_A Genome polyprotein [con 99.5 4.3E-15 1.5E-19 166.4 5.8 121 533-702 9-145 (440)
69 3o8b_A HCV NS3 protease/helica 99.5 6.6E-15 2.3E-19 171.7 5.0 102 533-656 233-336 (666)
70 2jlq_A Serine protease subunit 99.5 7.5E-15 2.6E-19 164.8 3.4 149 511-703 4-157 (451)
71 2w00_A HSDR, R.ECOR124I; ATP-b 99.5 4.3E-14 1.5E-18 172.7 9.9 153 510-700 270-441 (1038)
72 1z3i_X Similar to RAD54-like; 99.4 1E-12 3.5E-17 154.0 18.5 162 510-701 54-234 (644)
73 2z83_A Helicase/nucleoside tri 99.4 4.7E-13 1.6E-17 150.6 12.6 99 533-651 22-125 (459)
74 3mwy_W Chromo domain-containin 99.4 7.7E-13 2.6E-17 158.7 13.1 132 509-650 234-379 (800)
75 3crv_A XPD/RAD3 related DNA he 99.4 6.6E-13 2.3E-17 152.7 11.8 134 509-652 1-187 (551)
76 2whx_A Serine protease/ntpase/ 99.3 4.8E-13 1.6E-17 156.0 4.2 142 512-700 172-321 (618)
77 2vl7_A XPD; helicase, unknown 99.3 4.5E-12 1.5E-16 145.5 10.3 129 508-650 4-187 (540)
78 2xau_A PRE-mRNA-splicing facto 99.3 6.2E-12 2.1E-16 150.1 11.1 186 505-733 87-282 (773)
79 3rc3_A ATP-dependent RNA helic 99.2 8.1E-12 2.8E-16 146.7 8.8 136 499-656 116-257 (677)
80 3jux_A Protein translocase sub 98.8 2.7E-08 9.4E-13 115.9 14.7 129 503-650 67-257 (822)
81 4a15_A XPD helicase, ATP-depen 98.7 3.5E-08 1.2E-12 115.0 9.3 86 510-602 2-88 (620)
82 4b3f_X DNA-binding protein smu 98.2 8.9E-06 3E-10 95.2 14.7 68 511-583 189-256 (646)
83 1c4o_A DNA nucleotide excision 98.1 1.4E-05 4.9E-10 93.8 13.1 111 509-630 6-141 (664)
84 3upu_A ATP-dependent DNA helic 98.1 1.4E-05 4.9E-10 89.5 11.8 73 507-580 20-94 (459)
85 1w36_D RECD, exodeoxyribonucle 98.0 4.5E-06 1.5E-10 97.1 7.5 70 512-587 150-223 (608)
86 2gk6_A Regulator of nonsense t 98.0 2.2E-05 7.5E-10 91.5 12.7 67 511-583 180-247 (624)
87 2xzl_A ATP-dependent helicase 98.0 2.2E-05 7.7E-10 94.0 12.3 67 511-583 360-427 (802)
88 2wjy_A Regulator of nonsense t 97.9 4.4E-05 1.5E-09 91.4 12.3 68 510-583 355-423 (800)
89 2d7d_A Uvrabc system protein B 97.8 7.4E-05 2.5E-09 87.7 12.2 112 508-630 9-145 (661)
90 3e1s_A Exodeoxyribonuclease V, 97.8 7.5E-05 2.6E-09 86.2 11.9 66 508-579 186-251 (574)
91 2hjv_A ATP-dependent RNA helic 96.6 0.014 4.7E-07 55.5 11.5 80 558-647 33-112 (163)
92 3lfu_A DNA helicase II; SF1 he 96.6 0.004 1.4E-07 72.0 9.2 67 511-585 9-79 (647)
93 2k50_A Replication factor A re 96.6 0.019 6.5E-07 51.8 11.4 81 250-362 9-96 (115)
94 2o0j_A Terminase, DNA packagin 96.5 0.017 5.6E-07 63.4 12.6 124 508-651 160-286 (385)
95 1fuk_A Eukaryotic initiation f 96.5 0.026 8.7E-07 53.6 12.3 91 545-647 17-107 (165)
96 3e0e_A Replication protein A; 96.4 0.018 6.1E-07 50.7 9.9 73 250-354 4-81 (97)
97 2p6n_A ATP-dependent RNA helic 96.4 0.023 8E-07 55.7 11.7 78 559-646 53-130 (191)
98 1c4o_A DNA nucleotide excision 96.3 0.018 6E-07 67.6 12.4 102 541-652 420-521 (664)
99 2rb4_A ATP-dependent RNA helic 96.3 0.017 5.7E-07 55.5 9.8 79 559-647 33-111 (175)
100 2jgn_A DBX, DDX3, ATP-dependen 96.2 0.011 3.8E-07 57.7 8.4 94 542-646 29-122 (185)
101 3eaq_A Heat resistant RNA depe 96.2 0.024 8.3E-07 56.4 11.0 92 541-644 14-105 (212)
102 2d7d_A Uvrabc system protein B 96.2 0.022 7.5E-07 66.7 12.3 102 541-652 426-527 (661)
103 1t5i_A C_terminal domain of A 96.1 0.017 5.9E-07 55.5 9.2 80 559-648 30-109 (172)
104 3cpe_A Terminase, DNA packagin 96.1 0.032 1.1E-06 64.4 13.1 75 508-588 160-236 (592)
105 2orw_A Thymidine kinase; TMTK, 96.1 0.013 4.5E-07 57.3 8.2 37 534-570 5-41 (184)
106 1a5t_A Delta prime, HOLB; zinc 96.0 0.017 5.9E-07 61.6 9.3 45 512-556 3-48 (334)
107 2eyq_A TRCF, transcription-rep 96.0 0.019 6.3E-07 71.5 10.9 98 550-655 802-899 (1151)
108 1uaa_A REP helicase, protein ( 95.9 0.0061 2.1E-07 71.3 5.8 81 511-601 2-86 (673)
109 1xx6_A Thymidine kinase; NESG, 95.9 0.014 4.9E-07 57.6 7.6 37 534-570 10-46 (191)
110 2j9r_A Thymidine kinase; TK1, 95.7 0.023 7.8E-07 57.3 8.1 38 534-571 30-67 (214)
111 2chg_A Replication factor C sm 95.5 0.042 1.4E-06 53.1 8.9 24 531-554 37-60 (226)
112 1pjr_A PCRA; DNA repair, DNA r 95.4 0.019 6.5E-07 67.9 7.5 67 511-585 11-81 (724)
113 2i4i_A ATP-dependent RNA helic 95.4 0.049 1.7E-06 58.7 10.2 85 550-644 266-350 (417)
114 2oca_A DAR protein, ATP-depend 95.3 0.084 2.9E-06 59.0 12.2 96 545-649 332-427 (510)
115 1wp9_A ATP-dependent RNA helic 95.3 0.073 2.5E-06 57.7 11.3 98 541-648 340-447 (494)
116 3dm3_A Replication factor A; p 95.3 0.091 3.1E-06 46.9 9.9 79 250-361 7-90 (105)
117 3u4q_A ATP-dependent helicase/ 95.3 0.019 6.4E-07 72.0 7.1 69 509-585 8-82 (1232)
118 3fht_A ATP-dependent RNA helic 95.2 0.1 3.4E-06 56.0 11.9 80 558-647 264-343 (412)
119 3te6_A Regulatory protein SIR3 95.0 0.097 3.3E-06 55.8 10.6 29 528-556 41-69 (318)
120 3i32_A Heat resistant RNA depe 95.0 0.077 2.6E-06 56.0 9.8 93 542-646 12-104 (300)
121 3i5x_A ATP-dependent RNA helic 94.9 0.18 6.1E-06 57.1 13.4 102 540-648 316-420 (563)
122 1hv8_A Putative ATP-dependent 94.8 0.082 2.8E-06 55.5 9.6 80 558-647 236-315 (367)
123 3pvs_A Replication-associated 94.8 0.025 8.6E-07 63.1 5.6 20 533-552 51-70 (447)
124 1xti_A Probable ATP-dependent 94.7 0.074 2.5E-06 56.7 8.9 80 559-648 249-328 (391)
125 3pey_A ATP-dependent RNA helic 94.7 0.15 5.1E-06 54.1 11.3 81 559-649 242-322 (395)
126 3sqw_A ATP-dependent RNA helic 94.6 0.25 8.5E-06 56.4 13.4 83 559-648 287-369 (579)
127 1s2m_A Putative ATP-dependent 94.5 0.14 5E-06 54.7 10.7 78 559-646 257-334 (400)
128 3bqs_A Uncharacterized protein 94.5 0.023 7.8E-07 49.8 3.4 32 210-241 5-36 (93)
129 2gno_A DNA polymerase III, gam 94.4 0.086 2.9E-06 55.7 8.3 38 516-553 2-39 (305)
130 3mab_A Uncharacterized protein 94.4 0.025 8.6E-07 49.5 3.4 32 210-241 5-36 (93)
131 1jbk_A CLPB protein; beta barr 94.1 0.71 2.4E-05 43.0 13.4 51 517-567 28-85 (195)
132 1z5z_A Helicase of the SNF2/RA 94.1 0.19 6.5E-06 52.1 10.1 100 541-648 93-193 (271)
133 3e2i_A Thymidine kinase; Zn-bi 94.1 0.075 2.6E-06 53.6 6.7 37 534-570 30-66 (219)
134 3vkw_A Replicase large subunit 94.0 0.033 1.1E-06 62.1 4.3 43 534-581 163-205 (446)
135 2yjt_D ATP-dependent RNA helic 93.0 0.01 3.4E-07 56.9 0.0 79 559-647 29-107 (170)
136 2j0s_A ATP-dependent RNA helic 93.9 0.27 9.3E-06 52.8 11.4 78 559-646 275-352 (410)
137 3hjh_A Transcription-repair-co 93.8 0.19 6.3E-06 56.7 10.1 90 534-634 16-117 (483)
138 2v1x_A ATP-dependent DNA helic 93.8 0.19 6.7E-06 57.9 10.5 77 559-645 266-342 (591)
139 1iqp_A RFCS; clamp loader, ext 93.7 0.17 5.7E-06 52.5 8.9 38 517-554 31-68 (327)
140 2db3_A ATP-dependent RNA helic 93.7 0.29 9.8E-06 53.8 11.2 76 560-645 300-375 (434)
141 2chq_A Replication factor C sm 93.7 0.098 3.3E-06 54.1 7.0 40 516-555 22-61 (319)
142 2qby_B CDC6 homolog 3, cell di 93.6 0.42 1.4E-05 50.8 12.1 55 513-567 25-88 (384)
143 3ec2_A DNA replication protein 93.6 0.11 3.6E-06 49.7 6.6 62 513-575 16-81 (180)
144 4a1f_A DNAB helicase, replicat 93.5 0.12 4E-06 55.7 7.3 122 519-651 35-169 (338)
145 1oyw_A RECQ helicase, ATP-depe 93.3 0.27 9.2E-06 55.7 10.4 77 559-645 235-311 (523)
146 2va8_A SSO2462, SKI2-type heli 93.3 0.33 1.1E-05 56.8 11.5 91 553-644 245-362 (715)
147 1w4r_A Thymidine kinase; type 93.2 0.065 2.2E-06 53.2 4.4 36 534-569 22-57 (195)
148 1o7i_A SSB, SSO2364, single st 93.2 0.67 2.3E-05 41.9 10.9 73 250-355 4-82 (119)
149 2w58_A DNAI, primosome compone 93.1 0.12 4.2E-06 50.1 6.3 54 514-567 32-89 (202)
150 2r6a_A DNAB helicase, replicat 93.1 0.21 7.2E-06 55.5 8.9 127 512-651 187-326 (454)
151 1z63_A Helicase of the SNF2/RA 93.1 0.31 1E-05 54.3 10.2 100 541-648 322-422 (500)
152 3tbk_A RIG-I helicase domain; 92.8 0.24 8.2E-06 55.2 8.9 100 542-647 369-479 (555)
153 2zj8_A DNA helicase, putative 92.7 0.41 1.4E-05 56.2 11.1 95 554-650 231-349 (720)
154 2orv_A Thymidine kinase; TP4A 92.7 0.078 2.7E-06 54.0 4.3 37 534-570 21-57 (234)
155 2q6t_A DNAB replication FORK h 92.6 0.15 5.3E-06 56.4 7.0 122 519-651 189-323 (444)
156 1gm5_A RECG; helicase, replica 92.6 0.037 1.3E-06 66.1 2.0 96 553-656 571-675 (780)
157 3eie_A Vacuolar protein sortin 92.5 0.18 6E-06 53.3 7.0 23 532-554 51-73 (322)
158 2v1u_A Cell division control p 92.5 0.35 1.2E-05 51.2 9.3 44 513-556 24-68 (387)
159 2k75_A Uncharacterized protein 92.4 0.6 2.1E-05 41.5 9.3 70 250-355 5-79 (106)
160 1im4_A DBH; DNA polymerase PAL 92.4 0.046 1.6E-06 55.2 2.2 30 209-238 184-213 (221)
161 1sxj_B Activator 1 37 kDa subu 92.4 0.26 8.9E-06 50.9 8.0 23 533-555 43-65 (323)
162 3bos_A Putative DNA replicatio 92.2 0.17 5.9E-06 49.7 6.0 51 517-567 37-87 (242)
163 3u61_B DNA polymerase accessor 92.1 0.27 9.2E-06 51.5 7.8 23 637-659 104-127 (324)
164 2p65_A Hypothetical protein PF 91.9 0.27 9.4E-06 46.0 6.9 41 516-556 27-67 (187)
165 2l8b_A Protein TRAI, DNA helic 91.9 0.16 5.5E-06 49.8 5.3 110 511-661 34-144 (189)
166 4a2p_A RIG-I, retinoic acid in 91.9 0.21 7.3E-06 55.8 7.1 106 541-647 369-480 (556)
167 1wcn_A Transcription elongatio 91.5 0.079 2.7E-06 43.9 2.2 34 208-241 6-39 (70)
168 1fnn_A CDC6P, cell division co 91.5 0.54 1.8E-05 49.9 9.4 34 534-567 46-80 (389)
169 3gfk_B DNA-directed RNA polyme 91.4 0.15 5.2E-06 43.2 3.8 35 204-239 11-45 (79)
170 2zpa_A Uncharacterized protein 91.4 0.25 8.6E-06 57.7 7.0 59 511-576 175-233 (671)
171 2z0m_A 337AA long hypothetical 91.3 0.37 1.2E-05 49.9 7.7 75 559-647 219-293 (337)
172 2qby_A CDC6 homolog 1, cell di 91.3 0.36 1.2E-05 50.9 7.7 55 513-567 25-83 (386)
173 2kbn_A Conserved protein; nucl 91.2 1.7 5.7E-05 38.8 10.9 72 250-355 7-80 (109)
174 4dez_A POL IV 1, DNA polymeras 91.1 0.11 3.8E-06 55.9 3.5 37 208-245 177-213 (356)
175 2xau_A PRE-mRNA-splicing facto 91.1 0.43 1.5E-05 56.8 8.9 85 559-644 302-393 (773)
176 1jx4_A DNA polymerase IV (fami 91.0 0.1 3.4E-06 56.3 3.0 36 209-245 178-213 (352)
177 1q57_A DNA primase/helicase; d 90.9 0.13 4.4E-06 57.9 3.9 61 519-582 231-292 (503)
178 3bq0_A POL IV, DBH, DNA polyme 90.9 0.1 3.5E-06 56.2 3.0 36 209-245 179-214 (354)
179 2qgz_A Helicase loader, putati 90.9 0.38 1.3E-05 50.7 7.3 36 532-567 152-188 (308)
180 2p6r_A Afuhel308 helicase; pro 90.5 0.59 2E-05 54.7 9.2 97 552-650 234-351 (702)
181 3eiq_A Eukaryotic initiation f 90.4 0.16 5.4E-06 54.6 3.9 78 559-646 279-356 (414)
182 1z3e_B DNA-directed RNA polyme 90.4 0.17 5.9E-06 42.2 3.2 34 205-239 5-38 (73)
183 2qp9_X Vacuolar protein sortin 90.3 0.25 8.4E-06 53.1 5.3 32 532-566 84-115 (355)
184 3k4g_A DNA-directed RNA polyme 90.3 0.21 7.2E-06 43.0 3.7 36 204-240 7-42 (86)
185 3mwy_W Chromo domain-containin 90.2 1.9 6.5E-05 51.3 13.4 98 542-648 554-653 (800)
186 3osn_A DNA polymerase IOTA; ho 89.9 0.16 5.4E-06 56.2 3.5 35 210-245 235-269 (420)
187 3kl4_A SRP54, signal recogniti 89.9 1.7 5.9E-05 48.1 11.8 36 532-567 97-132 (433)
188 3dmq_A RNA polymerase-associat 89.6 0.53 1.8E-05 57.4 8.0 97 541-648 486-584 (968)
189 4gl2_A Interferon-induced heli 89.4 0.2 6.7E-06 58.3 3.9 81 560-646 400-490 (699)
190 1yks_A Genome polyprotein [con 89.4 0.33 1.1E-05 53.7 5.5 71 558-643 175-245 (440)
191 3fmp_B ATP-dependent RNA helic 89.2 0.072 2.4E-06 59.2 0.0 75 560-644 333-407 (479)
192 4f4y_A POL IV, DNA polymerase 88.9 0.14 4.6E-06 55.6 1.9 36 209-245 179-214 (362)
193 1ci4_A Protein (barrier-TO-aut 88.8 0.3 1E-05 42.1 3.5 33 208-240 17-49 (89)
194 3bh0_A DNAB-like replicative h 88.7 0.78 2.7E-05 48.3 7.7 62 519-583 57-118 (315)
195 3pzp_A DNA polymerase kappa; D 88.6 0.21 7.1E-06 56.8 3.2 31 209-239 338-368 (517)
196 3gqc_A DNA repair protein REV1 88.5 0.22 7.5E-06 56.4 3.3 36 209-245 315-350 (504)
197 3dm5_A SRP54, signal recogniti 88.3 2 6.8E-05 47.7 10.9 36 532-567 100-135 (443)
198 2aq4_A DNA repair protein REV1 88.3 0.22 7.6E-06 55.2 3.1 38 209-246 241-280 (434)
199 2dr3_A UPF0273 protein PH0284; 88.3 0.41 1.4E-05 47.4 4.9 47 534-581 25-71 (247)
200 2zan_A Vacuolar protein sortin 88.2 0.4 1.4E-05 53.2 5.1 22 532-553 167-188 (444)
201 4b4t_J 26S protease regulatory 88.0 1.1 3.9E-05 49.1 8.5 42 525-569 175-216 (405)
202 4a2q_A RIG-I, retinoic acid in 87.9 0.64 2.2E-05 55.3 7.1 106 541-647 610-721 (797)
203 2b8t_A Thymidine kinase; deoxy 87.9 0.46 1.6E-05 48.0 4.9 38 533-570 13-50 (223)
204 2wv9_A Flavivirin protease NS2 87.7 0.81 2.8E-05 53.6 7.5 71 558-643 408-478 (673)
205 2zts_A Putative uncharacterize 87.4 0.17 6E-06 50.2 1.5 48 534-582 32-80 (251)
206 2ykg_A Probable ATP-dependent 87.2 0.62 2.1E-05 54.0 6.3 100 542-647 378-488 (696)
207 1t94_A Polymerase (DNA directe 87.0 0.29 1E-05 54.6 3.1 32 209-241 282-313 (459)
208 3kdf_D Replication protein A 3 86.9 3.8 0.00013 37.6 10.2 34 335-370 78-111 (132)
209 2z4s_A Chromosomal replication 86.5 3.2 0.00011 45.8 11.2 46 532-578 130-177 (440)
210 2v6i_A RNA helicase; membrane, 86.4 1.2 4E-05 49.1 7.6 69 559-642 170-238 (431)
211 1u94_A RECA protein, recombina 86.4 1 3.5E-05 48.5 6.9 51 519-571 50-102 (356)
212 3n70_A Transport activator; si 86.3 0.72 2.5E-05 42.5 5.0 21 532-552 24-44 (145)
213 1l8q_A Chromosomal replication 86.2 1 3.5E-05 47.1 6.7 37 532-568 37-73 (324)
214 4b4t_M 26S protease regulatory 85.6 0.78 2.7E-05 50.9 5.6 40 527-569 210-249 (434)
215 4a2w_A RIG-I, retinoic acid in 85.6 0.94 3.2E-05 55.0 6.8 105 542-647 611-721 (936)
216 3io5_A Recombination and repai 85.6 1.4 4.8E-05 47.0 7.3 41 534-574 30-72 (333)
217 2fwr_A DNA repair protein RAD2 85.4 0.37 1.3E-05 53.1 3.0 76 558-648 347-422 (472)
218 4b4t_L 26S protease subunit RP 85.4 0.99 3.4E-05 50.1 6.3 40 527-569 210-249 (437)
219 2w0m_A SSO2452; RECA, SSPF, un 85.2 0.68 2.3E-05 45.2 4.5 47 519-567 11-58 (235)
220 3cmu_A Protein RECA, recombina 85.1 1.1 3.7E-05 58.4 7.3 41 532-572 1427-1467(2050)
221 1xp8_A RECA protein, recombina 84.7 1.5 5.1E-05 47.5 7.2 50 519-570 61-112 (366)
222 3pxg_A Negative regulator of g 84.6 0.68 2.3E-05 51.7 4.6 42 515-556 184-225 (468)
223 3hr8_A Protein RECA; alpha and 84.5 1.4 4.9E-05 47.5 6.9 52 519-572 48-101 (356)
224 1fuu_A Yeast initiation factor 84.2 0.2 6.8E-06 53.3 0.0 76 560-645 259-334 (394)
225 3syl_A Protein CBBX; photosynt 83.9 1.8 6.3E-05 44.4 7.3 24 533-556 68-91 (309)
226 4b4t_K 26S protease regulatory 83.7 1.3 4.5E-05 48.9 6.4 39 528-569 202-240 (428)
227 3fho_A ATP-dependent RNA helic 83.6 0.28 9.7E-06 55.1 0.9 79 559-647 356-434 (508)
228 2cvh_A DNA repair and recombin 83.5 1.2 3.9E-05 43.3 5.2 45 519-568 8-53 (220)
229 1g5t_A COB(I)alamin adenosyltr 82.9 1.4 4.6E-05 43.7 5.4 35 533-567 29-63 (196)
230 3oiy_A Reverse gyrase helicase 82.9 1.6 5.4E-05 47.1 6.5 75 559-648 251-330 (414)
231 3bgw_A DNAB-like replicative h 82.8 1.5 5E-05 48.7 6.3 66 512-582 181-246 (444)
232 1ofh_A ATP-dependent HSL prote 82.7 1.2 4E-05 45.7 5.1 23 532-554 50-72 (310)
233 3cmw_A Protein RECA, recombina 82.4 1.4 4.7E-05 56.6 6.5 43 534-576 1433-1475(1706)
234 3co5_A Putative two-component 82.2 1 3.6E-05 41.4 4.1 19 532-550 27-45 (143)
235 4fcw_A Chaperone protein CLPB; 82.2 0.6 2E-05 48.2 2.7 33 534-566 49-81 (311)
236 4ecq_A DNA polymerase ETA; tra 82.1 0.51 1.7E-05 52.4 2.2 36 209-245 253-289 (435)
237 2xgj_A ATP-dependent RNA helic 81.8 2.4 8.2E-05 52.0 8.2 90 560-651 343-462 (1010)
238 4b4t_H 26S protease regulatory 81.7 1.5 5.3E-05 48.9 5.9 41 526-569 237-277 (467)
239 1z3i_X Similar to RAD54-like; 81.7 7.7 0.00026 44.9 12.1 99 540-648 395-497 (644)
240 4gop_B Putative uncharacterize 81.7 9.9 0.00034 34.9 10.6 34 335-370 83-116 (136)
241 2xxa_A Signal recognition part 81.6 3.3 0.00011 45.8 8.6 36 532-567 100-136 (433)
242 2zr9_A Protein RECA, recombina 81.6 1.3 4.5E-05 47.5 5.2 50 519-570 48-99 (349)
243 2bjv_A PSP operon transcriptio 81.2 1.9 6.4E-05 43.6 6.0 21 533-553 30-50 (265)
244 3h1t_A Type I site-specific re 81.2 3.8 0.00013 46.5 9.2 89 559-649 438-528 (590)
245 4b4t_I 26S protease regulatory 81.0 1.6 5.6E-05 48.3 5.7 39 528-569 212-250 (437)
246 1b22_A DNA repair protein RAD5 80.6 0.37 1.3E-05 43.6 0.4 33 209-241 23-57 (114)
247 1coo_A RNA polymerase alpha su 80.4 0.66 2.2E-05 40.9 1.9 36 203-239 18-53 (98)
248 3rc3_A ATP-dependent RNA helic 80.3 4.5 0.00015 47.4 9.5 77 563-650 323-401 (677)
249 1d2n_A N-ethylmaleimide-sensit 80.1 1.6 5.4E-05 44.4 5.0 26 529-554 61-86 (272)
250 2r8r_A Sensor protein; KDPD, P 79.6 1.6 5.6E-05 44.1 4.8 36 532-567 6-41 (228)
251 3uk6_A RUVB-like 2; hexameric 79.4 1.9 6.5E-05 45.5 5.6 43 513-555 49-93 (368)
252 2z43_A DNA repair and recombin 79.4 1.4 4.8E-05 46.4 4.5 59 520-580 96-162 (324)
253 1e9r_A Conjugal transfer prote 79.0 1.8 6.2E-05 47.3 5.4 41 533-573 54-94 (437)
254 2whx_A Serine protease/ntpase/ 79.0 3.9 0.00013 47.3 8.4 71 558-643 353-423 (618)
255 2qz4_A Paraplegin; AAA+, SPG7, 78.9 2.3 7.7E-05 42.5 5.6 34 531-567 38-71 (262)
256 2jlq_A Serine protease subunit 78.7 3.2 0.00011 45.7 7.3 71 558-643 186-256 (451)
257 2r2a_A Uncharacterized protein 78.4 1.1 3.9E-05 44.1 3.1 25 532-556 5-29 (199)
258 4a4z_A Antiviral helicase SKI2 77.3 27 0.00093 42.6 15.5 83 560-649 336-453 (997)
259 3h4m_A Proteasome-activating n 77.3 2 6.8E-05 43.7 4.7 34 530-566 49-82 (285)
260 3hws_A ATP-dependent CLP prote 77.2 2.1 7.1E-05 45.6 5.0 23 532-554 51-73 (363)
261 1sxj_D Activator 1 41 kDa subu 77.2 1.4 4.6E-05 46.2 3.5 39 516-554 42-80 (353)
262 1sxj_C Activator 1 40 kDa subu 77.1 1.9 6.4E-05 45.5 4.6 40 516-555 30-69 (340)
263 2fmp_A DNA polymerase beta; nu 76.9 1.3 4.6E-05 47.3 3.3 30 210-239 99-128 (335)
264 3t15_A Ribulose bisphosphate c 76.7 1.7 6E-05 45.0 4.1 35 531-568 35-69 (293)
265 2kjq_A DNAA-related protein; s 76.6 1.9 6.6E-05 40.1 4.0 33 533-565 37-69 (149)
266 3l9o_A ATP-dependent RNA helic 76.5 12 0.00041 46.3 12.1 83 560-643 441-553 (1108)
267 2j37_W Signal recognition part 76.3 34 0.0012 38.5 14.8 37 532-568 101-137 (504)
268 1cr0_A DNA primase/helicase; R 76.0 2.8 9.6E-05 43.1 5.5 48 519-568 24-72 (296)
269 2i1q_A DNA repair and recombin 75.8 1.3 4.5E-05 46.4 2.9 35 209-243 3-37 (322)
270 2z83_A Helicase/nucleoside tri 75.8 1.5 5.2E-05 48.6 3.6 71 559-644 189-259 (459)
271 3cf0_A Transitional endoplasmi 74.8 2.5 8.5E-05 43.9 4.7 25 530-554 47-71 (301)
272 2ffh_A Protein (FFH); SRP54, s 74.6 11 0.00038 41.5 10.1 35 533-567 99-133 (425)
273 2bcq_A DNA polymerase lambda; 74.1 1.8 6.1E-05 46.4 3.4 28 212-239 99-126 (335)
274 2r62_A Cell division protease 73.9 2 6.8E-05 43.3 3.6 26 529-554 41-66 (268)
275 2r44_A Uncharacterized protein 73.8 1.4 4.9E-05 46.0 2.6 19 534-552 48-66 (331)
276 1ojl_A Transcriptional regulat 73.4 3 0.0001 43.6 4.9 22 532-553 25-46 (304)
277 2ihm_A POL MU, DNA polymerase 73.2 1.5 5.1E-05 47.4 2.6 28 210-237 103-130 (360)
278 3pfi_A Holliday junction ATP-d 72.9 3.8 0.00013 42.8 5.6 22 531-552 54-75 (338)
279 1lv7_A FTSH; alpha/beta domain 72.8 3.3 0.00011 41.5 4.9 23 531-553 44-66 (257)
280 2px0_A Flagellar biosynthesis 72.8 3.4 0.00012 43.2 5.1 36 532-567 105-141 (296)
281 2yvu_A Probable adenylyl-sulfa 72.5 4.2 0.00014 38.6 5.3 35 532-566 13-47 (186)
282 2pi2_A Replication protein A 3 72.2 17 0.00057 37.4 10.2 33 335-369 118-150 (270)
283 3pxi_A Negative regulator of g 72.0 2.4 8.1E-05 50.1 4.1 41 515-555 184-224 (758)
284 4ddu_A Reverse gyrase; topoiso 71.0 5.8 0.0002 49.0 7.4 76 559-649 308-388 (1104)
285 1pzn_A RAD51, DNA repair and r 70.8 2.1 7.1E-05 45.9 3.0 35 209-243 35-69 (349)
286 1n0w_A DNA repair protein RAD5 70.8 3.1 0.00011 40.9 4.1 35 534-568 26-66 (243)
287 1njg_A DNA polymerase III subu 70.6 5.9 0.0002 37.9 6.1 22 533-554 46-67 (250)
288 3lw7_A Adenylate kinase relate 70.6 1.8 6.1E-05 39.9 2.1 20 533-552 2-21 (179)
289 3d8b_A Fidgetin-like protein 1 70.6 3.2 0.00011 44.3 4.4 34 531-567 116-149 (357)
290 4ag6_A VIRB4 ATPase, type IV s 70.5 4.1 0.00014 43.8 5.3 36 533-568 36-71 (392)
291 1jms_A Terminal deoxynucleotid 70.5 1.9 6.4E-05 47.0 2.6 29 210-238 122-150 (381)
292 1nks_A Adenylate kinase; therm 70.5 5.2 0.00018 37.5 5.5 36 534-570 3-38 (194)
293 1um8_A ATP-dependent CLP prote 70.3 3.5 0.00012 44.0 4.7 23 532-554 72-94 (376)
294 1sxj_E Activator 1 40 kDa subu 70.1 2.8 9.6E-05 43.9 3.8 39 516-554 19-58 (354)
295 1tue_A Replication protein E1; 70.0 5 0.00017 40.1 5.3 53 496-552 26-78 (212)
296 1v5w_A DMC1, meiotic recombina 70.0 3.1 0.00011 44.3 4.1 49 520-570 111-166 (343)
297 3hu3_A Transitional endoplasmi 69.9 4.3 0.00015 45.6 5.5 36 528-566 234-269 (489)
298 2c9o_A RUVB-like 1; hexameric 69.7 4.5 0.00015 44.6 5.6 35 532-567 63-97 (456)
299 1wjj_A Hypothetical protein F2 69.6 26 0.00088 32.8 9.9 23 250-272 18-41 (145)
300 1p9r_A General secretion pathw 69.6 5.3 0.00018 44.0 6.0 50 512-566 151-201 (418)
301 3vfd_A Spastin; ATPase, microt 69.1 5 0.00017 43.1 5.6 34 532-568 148-181 (389)
302 3pxi_A Negative regulator of g 69.1 3 0.0001 49.2 4.2 32 534-565 523-554 (758)
303 1qvr_A CLPB protein; coiled co 68.9 6.7 0.00023 47.0 7.2 43 515-557 174-216 (854)
304 1rz3_A Hypothetical protein rb 68.7 10 0.00035 36.5 7.3 36 531-566 21-56 (201)
305 1vma_A Cell division protein F 68.6 4.6 0.00016 42.4 5.1 35 533-567 105-139 (306)
306 1sxj_A Activator 1 95 kDa subu 68.3 4.4 0.00015 45.6 5.1 33 532-567 77-109 (516)
307 2i1q_A DNA repair and recombin 68.2 3.1 0.00011 43.5 3.6 62 519-582 86-165 (322)
308 3nbx_X ATPase RAVA; AAA+ ATPas 68.2 2 6.7E-05 48.5 2.2 20 534-553 43-62 (500)
309 1nlf_A Regulatory protein REPA 68.0 6.5 0.00022 40.0 6.0 46 534-581 32-88 (279)
310 1g8p_A Magnesium-chelatase 38 67.6 1.9 6.4E-05 45.1 1.8 21 533-553 46-66 (350)
311 2x8a_A Nuclear valosin-contain 67.3 4.4 0.00015 41.6 4.5 29 524-552 36-64 (274)
312 3a4m_A L-seryl-tRNA(SEC) kinas 66.5 5.1 0.00018 40.6 4.8 35 532-566 4-38 (260)
313 1ixz_A ATP-dependent metallopr 66.4 4.9 0.00017 40.2 4.5 22 531-552 48-69 (254)
314 3b9p_A CG5977-PA, isoform A; A 66.2 3 0.0001 42.7 3.0 22 532-553 54-75 (297)
315 2v3c_C SRP54, signal recogniti 66.0 3.5 0.00012 45.6 3.6 36 532-567 99-134 (432)
316 3kjh_A CO dehydrogenase/acetyl 66.0 4 0.00014 40.1 3.8 34 533-566 1-34 (254)
317 3cmw_A Protein RECA, recombina 65.9 4.8 0.00016 51.8 5.2 49 519-569 21-71 (1706)
318 1xwi_A SKD1 protein; VPS4B, AA 65.8 3.3 0.00011 43.5 3.3 23 532-554 45-67 (322)
319 2pbr_A DTMP kinase, thymidylat 65.8 6.2 0.00021 37.1 4.9 34 533-566 1-34 (195)
320 3bfv_A CAPA1, CAPB2, membrane 65.7 14 0.00047 37.9 7.9 36 531-566 80-117 (271)
321 1hqc_A RUVB; extended AAA-ATPa 65.5 6.9 0.00023 40.3 5.6 23 532-554 38-60 (324)
322 1zu4_A FTSY; GTPase, signal re 65.3 5.9 0.0002 41.8 5.1 35 533-567 106-140 (320)
323 2ehv_A Hypothetical protein PH 64.8 5.9 0.0002 38.9 4.8 35 534-568 32-67 (251)
324 3trf_A Shikimate kinase, SK; a 64.7 4.2 0.00014 38.3 3.5 22 533-554 6-27 (185)
325 3u4q_B ATP-dependent helicase/ 64.7 4.8 0.00017 49.9 4.9 48 535-583 4-54 (1166)
326 1qhx_A CPT, protein (chloramph 64.6 2.9 9.8E-05 39.2 2.3 21 533-553 4-24 (178)
327 3cmu_A Protein RECA, recombina 64.6 5.7 0.00019 51.9 5.6 44 533-577 1082-1125(2050)
328 3p32_A Probable GTPase RV1496/ 64.5 11 0.00038 40.1 7.1 37 531-567 78-114 (355)
329 3fb4_A Adenylate kinase; psych 64.4 4 0.00014 39.6 3.4 22 533-554 1-22 (216)
330 1y63_A LMAJ004144AAA protein; 64.3 4.3 0.00015 38.6 3.5 23 531-553 9-31 (184)
331 2z0h_A DTMP kinase, thymidylat 64.2 6.9 0.00024 37.0 5.0 34 533-566 1-34 (197)
332 2oap_1 GSPE-2, type II secreti 63.4 4.6 0.00016 45.6 4.1 31 533-564 261-291 (511)
333 3cio_A ETK, tyrosine-protein k 63.1 14 0.00049 38.3 7.5 32 535-566 107-139 (299)
334 3dl0_A Adenylate kinase; phosp 62.7 3.8 0.00013 39.8 2.9 21 533-553 1-21 (216)
335 2cdn_A Adenylate kinase; phosp 62.5 5.6 0.00019 38.2 4.0 25 530-554 18-42 (201)
336 1r6b_X CLPA protein; AAA+, N-t 62.1 8.3 0.00028 45.3 6.1 42 515-556 190-231 (758)
337 1iy2_A ATP-dependent metallopr 61.8 6.5 0.00022 40.0 4.5 21 532-552 73-93 (278)
338 3o8b_A HCV NS3 protease/helica 61.8 12 0.00041 43.7 7.2 67 559-643 395-461 (666)
339 1xjc_A MOBB protein homolog; s 61.7 8.4 0.00029 37.0 5.0 34 534-567 6-39 (169)
340 1ly1_A Polynucleotide kinase; 61.7 4 0.00014 38.0 2.7 21 533-553 3-23 (181)
341 2z43_A DNA repair and recombin 61.6 1.7 5.7E-05 45.9 0.0 35 209-243 12-46 (324)
342 1nn5_A Similar to deoxythymidy 61.4 9.2 0.00032 36.6 5.4 36 531-566 8-43 (215)
343 1w36_B RECB, exodeoxyribonucle 61.4 13 0.00043 46.3 7.8 53 534-586 18-82 (1180)
344 1w5s_A Origin recognition comp 61.0 7.6 0.00026 41.3 5.1 43 513-555 27-75 (412)
345 3koj_A Uncharacterized protein 60.8 40 0.0014 29.9 8.9 73 258-352 12-86 (108)
346 1aky_A Adenylate kinase; ATP:A 60.4 5.7 0.00019 38.8 3.6 24 531-554 3-26 (220)
347 3sr0_A Adenylate kinase; phosp 60.4 5.2 0.00018 39.4 3.4 22 533-554 1-22 (206)
348 1gku_B Reverse gyrase, TOP-RG; 60.3 6.8 0.00023 48.2 5.1 74 560-648 275-352 (1054)
349 1jr3_A DNA polymerase III subu 60.2 5.7 0.00019 41.7 3.9 20 534-553 40-59 (373)
350 1zak_A Adenylate kinase; ATP:A 60.0 6.5 0.00022 38.4 4.0 24 531-554 4-27 (222)
351 2duy_A Competence protein come 59.9 5.6 0.00019 32.6 2.9 29 210-238 28-57 (75)
352 3vdy_A SSB, single-stranded DN 59.8 29 0.00099 30.8 8.0 76 259-352 7-83 (116)
353 1qvr_A CLPB protein; coiled co 59.8 3.7 0.00013 49.2 2.5 33 534-566 590-622 (854)
354 2eyu_A Twitching motility prot 59.7 9.7 0.00033 38.9 5.4 18 533-550 26-43 (261)
355 2pez_A Bifunctional 3'-phospho 59.6 9.4 0.00032 35.8 4.9 35 532-566 5-39 (179)
356 2pt5_A Shikimate kinase, SK; a 59.6 5.7 0.0002 36.6 3.3 22 533-554 1-22 (168)
357 1g41_A Heat shock protein HSLU 59.4 4.1 0.00014 45.2 2.6 22 532-553 50-71 (444)
358 3a8t_A Adenylate isopentenyltr 59.0 4.4 0.00015 43.4 2.7 21 534-554 42-62 (339)
359 1qf9_A UMP/CMP kinase, protein 58.9 6.8 0.00023 36.7 3.8 22 533-554 7-28 (194)
360 1rj9_A FTSY, signal recognitio 58.8 10 0.00035 39.7 5.5 36 532-567 102-137 (304)
361 1ynx_A Replication factor-A pr 58.8 26 0.00088 31.1 7.4 73 250-351 6-84 (114)
362 1v5w_A DMC1, meiotic recombina 58.5 2 7E-05 45.7 0.0 44 201-244 17-62 (343)
363 3kb2_A SPBC2 prophage-derived 58.5 6.2 0.00021 36.3 3.4 20 534-553 3-22 (173)
364 3kf6_A Protein STN1; OB fold, 58.3 52 0.0018 31.2 9.8 33 335-369 95-127 (159)
365 3k7u_C MP18 RNA editing comple 57.8 58 0.002 30.5 9.9 77 258-352 7-86 (148)
366 1e4v_A Adenylate kinase; trans 57.6 6.2 0.00021 38.4 3.4 22 533-554 1-22 (214)
367 1kht_A Adenylate kinase; phosp 57.6 6.6 0.00023 36.8 3.5 23 533-555 4-26 (192)
368 2iyv_A Shikimate kinase, SK; t 57.3 7.3 0.00025 36.6 3.7 22 533-554 3-24 (184)
369 1in4_A RUVB, holliday junction 57.2 5.6 0.00019 41.9 3.2 21 533-553 52-72 (334)
370 1tev_A UMP-CMP kinase; ploop, 57.1 6.2 0.00021 37.0 3.2 22 532-553 3-24 (196)
371 1kag_A SKI, shikimate kinase I 57.1 6.3 0.00022 36.5 3.2 20 533-552 5-24 (173)
372 1c9k_A COBU, adenosylcobinamid 57.0 4.9 0.00017 39.1 2.4 44 535-582 2-45 (180)
373 3vaa_A Shikimate kinase, SK; s 56.8 7.2 0.00025 37.5 3.6 22 533-554 26-47 (199)
374 2vhj_A Ntpase P4, P4; non- hyd 56.8 3.5 0.00012 44.0 1.4 32 534-568 125-156 (331)
375 1byi_A Dethiobiotin synthase; 56.6 11 0.00039 36.4 5.1 33 536-568 6-38 (224)
376 2ewv_A Twitching motility prot 56.5 9.7 0.00033 41.0 4.9 20 533-552 137-156 (372)
377 1s5l_U Photosystem II 12 kDa e 56.2 7 0.00024 36.2 3.1 29 210-238 64-93 (134)
378 2p5t_B PEZT; postsegregational 56.2 52 0.0018 32.7 10.1 23 531-553 31-53 (253)
379 3zq6_A Putative arsenical pump 56.1 10 0.00035 39.8 5.0 34 534-567 16-49 (324)
380 2ce7_A Cell division protein F 56.0 9.2 0.00032 42.8 4.8 38 527-567 44-81 (476)
381 2rhm_A Putative kinase; P-loop 55.9 6.7 0.00023 36.9 3.2 22 532-553 5-26 (193)
382 3pgz_A Single-stranded DNA-bin 55.5 40 0.0014 33.0 8.7 80 258-351 27-107 (193)
383 2ze6_A Isopentenyl transferase 55.5 6.9 0.00024 39.6 3.4 21 534-554 3-23 (253)
384 3crm_A TRNA delta(2)-isopenten 55.4 6.1 0.00021 42.0 3.0 21 534-554 7-27 (323)
385 2wwf_A Thymidilate kinase, put 55.4 12 0.00042 35.7 5.1 33 532-564 10-42 (212)
386 3jvv_A Twitching mobility prot 55.3 9.4 0.00032 40.9 4.6 17 534-550 125-141 (356)
387 1j8m_F SRP54, signal recogniti 55.2 8.6 0.00029 40.1 4.1 35 533-567 99-133 (297)
388 3iij_A Coilin-interacting nucl 55.2 8.3 0.00028 36.1 3.7 22 533-554 12-33 (180)
389 2woo_A ATPase GET3; tail-ancho 55.1 10 0.00035 39.9 4.8 33 534-566 21-53 (329)
390 2ph1_A Nucleotide-binding prot 55.1 15 0.0005 37.0 5.8 31 536-566 23-53 (262)
391 1zd8_A GTP:AMP phosphotransfer 54.7 6.5 0.00022 38.6 3.0 22 532-553 7-28 (227)
392 3bs4_A Uncharacterized protein 54.6 12 0.0004 38.5 4.9 62 520-583 10-71 (260)
393 3t61_A Gluconokinase; PSI-biol 54.5 8.5 0.00029 36.9 3.7 22 532-553 18-39 (202)
394 3foz_A TRNA delta(2)-isopenten 54.2 6.5 0.00022 41.6 3.0 21 534-554 12-32 (316)
395 3b9q_A Chloroplast SRP recepto 54.1 12 0.0004 39.2 5.0 35 533-567 101-135 (302)
396 3uie_A Adenylyl-sulfate kinase 54.1 12 0.0004 35.9 4.7 31 532-562 25-55 (200)
397 3la6_A Tyrosine-protein kinase 54.1 25 0.00086 36.2 7.5 28 539-566 100-127 (286)
398 3tlx_A Adenylate kinase 2; str 53.9 7.2 0.00025 39.1 3.2 24 531-554 28-51 (243)
399 1ihu_A Arsenical pump-driving 53.8 13 0.00043 42.4 5.6 34 533-566 9-42 (589)
400 3k1j_A LON protease, ATP-depen 53.7 7.8 0.00027 44.4 3.8 36 516-553 46-81 (604)
401 1m7g_A Adenylylsulfate kinase; 53.7 12 0.0004 36.3 4.6 35 532-566 25-60 (211)
402 2bwj_A Adenylate kinase 5; pho 53.6 8.4 0.00029 36.4 3.5 22 533-554 13-34 (199)
403 1ak2_A Adenylate kinase isoenz 53.5 8.9 0.00031 37.9 3.8 25 531-555 15-39 (233)
404 3exa_A TRNA delta(2)-isopenten 53.5 6.5 0.00022 41.7 2.8 21 534-554 5-25 (322)
405 1u0j_A DNA replication protein 53.4 11 0.00038 38.9 4.5 52 500-554 74-126 (267)
406 3ulp_A Single-strand binding p 53.3 55 0.0019 29.3 8.8 79 259-351 8-87 (124)
407 3ug7_A Arsenical pump-driving 53.3 12 0.00041 39.8 5.0 33 535-567 29-61 (349)
408 3be4_A Adenylate kinase; malar 53.3 7.2 0.00025 38.1 3.0 23 532-554 5-27 (217)
409 2jaq_A Deoxyguanosine kinase; 53.3 8.2 0.00028 36.6 3.4 22 533-554 1-22 (205)
410 2oze_A ORF delta'; para, walke 53.2 15 0.00052 37.4 5.6 28 539-566 44-71 (298)
411 2c95_A Adenylate kinase 1; tra 53.0 8.7 0.0003 36.2 3.5 23 532-554 9-31 (196)
412 3cm0_A Adenylate kinase; ATP-b 53.0 6 0.0002 37.2 2.3 22 532-553 4-25 (186)
413 3tqy_A Single-stranded DNA-bin 53.0 47 0.0016 31.3 8.5 78 258-351 9-88 (158)
414 3arc_U Photosystem II 12 kDa e 52.9 7.8 0.00027 33.9 2.8 30 210-239 27-57 (97)
415 2qmh_A HPR kinase/phosphorylas 52.7 6.9 0.00024 38.9 2.7 19 534-552 36-54 (205)
416 2a1j_A DNA repair endonuclease 52.7 4.8 0.00016 32.2 1.3 20 210-229 5-25 (63)
417 3e70_C DPA, signal recognition 52.6 14 0.00048 39.1 5.3 37 531-567 128-164 (328)
418 3f9v_A Minichromosome maintena 52.6 6.7 0.00023 45.1 3.0 17 534-550 329-345 (595)
419 1goj_A Kinesin, kinesin heavy 52.3 8.3 0.00028 41.5 3.5 39 512-550 57-99 (355)
420 1v1q_A Primosomal replication 52.3 1.4E+02 0.0049 27.3 13.0 78 258-352 20-98 (134)
421 3mfi_A DNA polymerase ETA; DNA 52.1 5.3 0.00018 45.2 2.0 38 205-242 300-344 (520)
422 1ls1_A Signal recognition part 52.0 13 0.00044 38.6 4.9 34 534-567 100-133 (295)
423 1via_A Shikimate kinase; struc 51.8 9.8 0.00033 35.5 3.6 21 534-554 6-26 (175)
424 4a74_A DNA repair and recombin 51.8 8.9 0.00031 37.0 3.4 36 534-569 27-68 (231)
425 4akg_A Glutathione S-transfera 51.7 15 0.00052 49.4 6.5 50 501-552 894-943 (2695)
426 2plr_A DTMP kinase, probable t 51.6 11 0.00037 35.9 4.0 23 533-555 5-27 (213)
427 2kz3_A Putative uncharacterize 51.5 12 0.00043 31.7 3.8 31 211-241 6-36 (83)
428 3ice_A Transcription terminati 51.5 8.2 0.00028 42.3 3.3 22 533-554 175-196 (422)
429 1e6c_A Shikimate kinase; phosp 51.4 10 0.00034 35.0 3.6 22 533-554 3-24 (173)
430 3of5_A Dethiobiotin synthetase 51.1 17 0.00057 36.3 5.4 29 540-568 13-41 (228)
431 3lgj_A Single-stranded DNA-bin 51.0 35 0.0012 32.6 7.4 78 259-352 25-105 (169)
432 2vw9_A Single-stranded DNA bin 50.9 45 0.0015 30.5 7.8 77 259-351 4-81 (134)
433 1ukz_A Uridylate kinase; trans 50.9 9 0.00031 36.6 3.2 21 532-552 15-35 (203)
434 1uf9_A TT1252 protein; P-loop, 50.7 8.3 0.00029 36.6 3.0 23 531-553 7-29 (203)
435 2xb4_A Adenylate kinase; ATP-b 50.5 9.4 0.00032 37.5 3.4 22 533-554 1-22 (223)
436 1g3q_A MIND ATPase, cell divis 50.3 14 0.00047 36.1 4.5 32 536-567 7-38 (237)
437 1ye8_A Protein THEP1, hypothet 50.1 8.4 0.00029 36.9 2.9 17 533-549 1-17 (178)
438 4a14_A Kinesin, kinesin-like p 50.1 7.9 0.00027 41.4 2.9 39 511-549 59-101 (344)
439 1hyq_A MIND, cell division inh 50.1 16 0.00053 36.5 5.0 32 536-567 7-38 (263)
440 1vq8_Y 50S ribosomal protein L 50.0 3.4 0.00012 42.1 0.0 28 210-237 16-43 (241)
441 2j41_A Guanylate kinase; GMP, 49.7 9.7 0.00033 36.2 3.3 20 533-552 7-26 (207)
442 2og2_A Putative signal recogni 49.4 16 0.00053 39.4 5.1 35 533-567 158-192 (359)
443 3dc4_A Kinesin-like protein NO 49.3 6.8 0.00023 42.0 2.2 38 512-549 71-112 (344)
444 2v9p_A Replication protein E1; 49.3 17 0.00059 38.1 5.3 33 517-551 113-145 (305)
445 1kgd_A CASK, peripheral plasma 49.2 9 0.00031 36.3 2.9 19 534-552 7-25 (180)
446 1gvn_B Zeta; postsegregational 49.1 11 0.00038 38.8 3.8 23 531-553 32-54 (287)
447 1cke_A CK, MSSA, protein (cyti 48.8 9.3 0.00032 37.1 3.0 21 533-553 6-26 (227)
448 3lda_A DNA repair protein RAD5 48.8 12 0.00041 40.9 4.1 47 518-566 165-218 (400)
449 1gtv_A TMK, thymidylate kinase 48.7 7.4 0.00025 37.3 2.2 21 534-554 2-22 (214)
450 1tf7_A KAIC; homohexamer, hexa 48.6 16 0.00054 41.0 5.3 46 534-580 283-328 (525)
451 1bg2_A Kinesin; motor protein, 48.6 8.8 0.0003 40.8 2.9 39 512-550 54-96 (325)
452 4eun_A Thermoresistant glucoki 48.6 9.9 0.00034 36.5 3.1 22 532-553 29-50 (200)
453 3tau_A Guanylate kinase, GMP k 48.5 11 0.00037 36.6 3.4 21 533-553 9-29 (208)
454 4dzz_A Plasmid partitioning pr 48.5 13 0.00045 35.3 4.0 30 538-567 8-37 (206)
455 2qor_A Guanylate kinase; phosp 48.5 10 0.00035 36.6 3.2 22 532-553 12-33 (204)
456 2w9m_A Polymerase X; SAXS, DNA 48.4 8.3 0.00028 44.2 2.9 33 207-239 95-127 (578)
457 2vli_A Antibiotic resistance p 48.4 6.7 0.00023 36.6 1.8 22 532-553 5-26 (183)
458 3q9l_A Septum site-determining 48.3 15 0.00052 36.3 4.5 31 536-566 7-37 (260)
459 3t0q_A AGR253WP; kinesin, alph 48.3 10 0.00034 40.7 3.3 40 511-550 62-104 (349)
460 3au7_A TIAS, putative uncharac 48.2 41 0.0014 36.7 8.1 71 251-351 278-348 (402)
461 2gza_A Type IV secretion syste 48.2 18 0.00062 38.6 5.4 16 534-549 177-192 (361)
462 3bfn_A Kinesin-like protein KI 48.2 9.3 0.00032 41.6 3.1 39 512-550 75-117 (388)
463 3cf2_A TER ATPase, transitiona 48.1 6.4 0.00022 47.0 1.9 36 529-567 235-270 (806)
464 3c8u_A Fructokinase; YP_612366 48.0 30 0.001 33.3 6.6 19 532-550 22-40 (208)
465 1txy_A Primosomal replication 47.8 76 0.0026 27.5 8.5 77 259-352 4-81 (104)
466 1f9v_A Kinesin-like protein KA 47.7 10 0.00035 40.7 3.3 39 512-550 62-103 (347)
467 3d3q_A TRNA delta(2)-isopenten 47.3 10 0.00035 40.5 3.2 21 534-554 9-29 (340)
468 3qxc_A Dethiobiotin synthetase 47.2 18 0.00063 36.5 5.0 32 537-568 27-58 (242)
469 2v54_A DTMP kinase, thymidylat 47.1 10 0.00035 36.0 3.0 36 532-569 4-40 (204)
470 1zp6_A Hypothetical protein AT 47.0 10 0.00035 35.6 2.9 20 533-552 10-29 (191)
471 3im1_A Protein SNU246, PRE-mRN 46.8 11 0.00039 39.7 3.4 31 208-238 156-186 (328)
472 1zuh_A Shikimate kinase; alpha 46.8 12 0.00042 34.5 3.4 22 533-554 8-29 (168)
473 1x88_A Kinesin-like protein KI 46.5 8.7 0.0003 41.4 2.5 40 511-550 64-107 (359)
474 3asz_A Uridine kinase; cytidin 46.5 10 0.00035 36.5 2.8 19 533-551 7-25 (211)
475 1z9f_A Single-strand binding p 46.4 41 0.0014 31.6 6.9 77 258-352 17-96 (153)
476 2vvg_A Kinesin-2; motor protei 46.4 9.9 0.00034 40.8 2.9 38 512-549 66-107 (350)
477 1r6b_X CLPA protein; AAA+, N-t 46.4 25 0.00085 41.2 6.6 21 534-554 490-510 (758)
478 2y65_A Kinesin, kinesin heavy 45.9 10 0.00035 41.0 2.9 40 511-550 60-103 (365)
479 1ry6_A Internal kinesin; kines 45.8 7.9 0.00027 41.8 2.0 40 511-550 59-103 (360)
480 1ihu_A Arsenical pump-driving 45.7 21 0.00071 40.6 5.7 33 534-566 329-361 (589)
481 1odf_A YGR205W, hypothetical 3 45.7 20 0.00068 37.1 5.1 22 530-551 29-50 (290)
482 3lre_A Kinesin-like protein KI 45.6 12 0.00042 40.1 3.5 39 512-550 82-124 (355)
483 1yrb_A ATP(GTP)binding protein 45.5 17 0.00057 36.1 4.4 33 534-567 16-48 (262)
484 3b6u_A Kinesin-like protein KI 45.5 10 0.00035 41.0 2.9 39 512-550 78-120 (372)
485 1t5c_A CENP-E protein, centrom 45.4 11 0.00036 40.5 3.0 39 512-550 54-96 (349)
486 2wsm_A Hydrogenase expression/ 45.4 18 0.00062 34.7 4.5 34 533-567 31-64 (221)
487 4etp_A Kinesin-like protein KA 45.4 11 0.00037 41.3 3.1 40 511-550 117-159 (403)
488 3end_A Light-independent proto 45.3 19 0.00064 37.0 4.8 33 534-566 43-75 (307)
489 1v8k_A Kinesin-like protein KI 45.2 9.8 0.00034 41.8 2.7 41 511-551 130-174 (410)
490 2afh_E Nitrogenase iron protei 45.1 20 0.00068 36.4 5.0 31 536-566 6-36 (289)
491 1qvc_A Single stranded DNA bin 45.0 56 0.0019 30.2 7.6 76 259-351 7-85 (145)
492 2if2_A Dephospho-COA kinase; a 45.0 11 0.00038 36.0 2.8 19 534-552 3-21 (204)
493 2ga8_A Hypothetical 39.9 kDa p 44.9 21 0.00073 38.3 5.3 24 527-550 19-42 (359)
494 1knq_A Gluconate kinase; ALFA/ 44.9 13 0.00045 34.5 3.3 20 533-552 9-28 (175)
495 3tr0_A Guanylate kinase, GMP k 44.8 11 0.00039 35.7 2.8 19 534-552 9-27 (205)
496 3iqw_A Tail-anchored protein t 44.7 16 0.00056 38.7 4.3 34 534-567 18-51 (334)
497 3b85_A Phosphate starvation-in 44.5 16 0.00056 35.8 4.0 42 513-560 9-50 (208)
498 3eph_A TRNA isopentenyltransfe 44.5 12 0.00042 40.9 3.4 22 534-555 4-25 (409)
499 2h58_A Kinesin-like protein KI 44.3 8.2 0.00028 41.1 1.9 21 530-550 79-99 (330)
500 1cp2_A CP2, nitrogenase iron p 44.2 19 0.00064 36.0 4.5 31 536-566 5-35 (269)
No 1
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=5.8e-72 Score=664.84 Aligned_cols=447 Identities=35% Similarity=0.535 Sum_probs=379.1
Q ss_pred hhhccCCcCCCCCHHHHHHHHhCCCCCHhHHhhcCCCcceeccc--ccccCCCCCeEEEEEEEEEeeccccCCCceEEEE
Q 045263 206 LLDKCISCVPGLSKRLYHQLENCGFYTLRKLLHHFPRTYADLQN--AQIDLDDGQYFIFIGEIISSRGMKAGCSFSFLEV 283 (742)
Q Consensus 206 ~L~~~I~~LkGVG~k~~~~L~klGI~Tv~DLL~~fPrrYeDr~~--~i~~l~~Ge~vti~G~V~~~~~~~~~~~~~~l~v 283 (742)
.|++||+.||||||+++++|+++||+|+.|||+|||++|+|++. ++.++.+|+.++|.|+|.+....+. +++.++++
T Consensus 112 ~~~~~~~~l~gvg~~~~~~l~~lgi~~~~dll~~~P~~y~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~ 190 (780)
T 1gm5_A 112 DLSTDIQYAKGVGPNRKKKLKKLGIETLRDLLEFFPRDYEDRRKIFKLNDLLPGEKVTTQGKIVSVETKKF-QNMNILTA 190 (780)
T ss_dssp CSCCCSSSSSSCCHHHHHHHHTTTCCSSGGGTSCCCSEEECCSCCCCSSCCCSSCCCEEEECCCCCEEEEC-SSCEEEEE
T ss_pred cccCCchhcCCCCHHHHHHHHHCCCCcHHHHHhhCCCceEeCCcCCcHHHcCCCCEEEEEEEEEEEEeecC-CCCeEEEE
Confidence 36789999999999999999999999999999999999999974 6899999999999999987643322 33456666
Q ss_pred EEeeeeccCCCCCCcceeeecCCCceeEEEEEeeeeecccccccchhHhhhccccC--CcEEEEEEEEeecCCCceeEEe
Q 045263 284 IVGCEIADTETTSGDEVVNIDSGQKKKIYLHLKKFFRGTRFTSIPFLKSIEGKHKV--GEFVCVSGKVRAMRSNNHYEMR 361 (742)
Q Consensus 284 ~v~~~~~~~~~~~~~~~~~~~~g~~~~i~l~~~~ff~~~~Ffn~pfl~~~~~~l~~--G~~v~v~GKv~~~~~~~~~~m~ 361 (742)
.+. |++|. +. ..|||++|++ +.|++ |+.++|+|||+.+.+.+.++|.
T Consensus 191 ~~~----------------d~~~~---~~---------~~~f~~~~~~---~~~~~~~g~~~~~~G~~~~~~~~~~~~~~ 239 (780)
T 1gm5_A 191 VLS----------------DGLVH---VP---------LKWFNQDYLQ---TYLKQLTGKEVFVTGTVKSNAYTGQYEIH 239 (780)
T ss_dssp EEC----------------CSSCC---EE---------EEECSCCTTH---HHHHTTCSSCEEEEEEECSCCTTSSCCEE
T ss_pred EEE----------------ECCce---EE---------EEEECcHHHH---hhCccCCCCEEEEEEEEEEccCCCcEEEE
Confidence 664 22332 22 2467888876 78899 9999999999884112357899
Q ss_pred eceeeecCcchhhhhhccCCCccccCCCCCCCHHHHHHHHHHHHHhC-CCCCCCCCHhHHhhcCCCCHHHHHHhccCCCC
Q 045263 362 EYNIDVLKDEDDLSLRAKGRPYPIYPSKGGLNASLLRDTIARALQAL-PANFDPVPKEITQEFGLLCLFDAYMGIHQPKH 440 (742)
Q Consensus 362 ~~~~e~l~~~~~~~~~~~~~I~PIYp~t~GLs~~~lrk~I~~aL~~~-~~~~d~LP~~l~~k~~l~~~~~Al~~IH~P~~ 440 (742)
||++++.++. . .++|+||||+|+||+++.|+++|.++|+.+ ....|+||++++++++|+++.+|+..||+|.+
T Consensus 240 ~p~~~~~~~~-~-----~~~~~pvY~~~~~l~~~~~~~~i~~~l~~~~~~~~e~lp~~~~~~~~l~~~~~al~~iH~P~~ 313 (780)
T 1gm5_A 240 NAEVTPKEGE-Y-----VRRILPIYRLTSGISQKQMRKIFEENIPSLCCSLKETLPERILEKRKLLGVKDAYYGMHFPKT 313 (780)
T ss_dssp EEEEECSCCS-S-----SSSCEEECCCBTTBCHHHHHHHHHHHHHHHHHCCCCCSCHHHHHHHCCCCSHHHHHHHHSCSS
T ss_pred cCEEeecccc-c-----cCceeeEecCCCCCCHHHHHHHHHHHHHhhhccCCCcCCHHHHHHcCCCcHHHHHHhCCCCCC
Confidence 9998764321 1 356999999999999999999999999876 34679999999999999999999999999999
Q ss_pred cchHHHHHHhhchhHHHHHHHHHHHHHHhhcccchhhchhhhhccccccccccccCchHHHHHHHHhCCCCCCHHHHHHH
Q 045263 441 IDEADLARKRLIFDEFFYLQLGRLYQMLEGLGTQFEKEGLLDKYRKPRLNAAYMEGWSSLTKKLLRALPYSLTSSQLSAI 520 (742)
Q Consensus 441 ~~~~~~Ar~Rl~f~El~~~ql~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lpf~Lt~~Q~~aI 520 (742)
.+++..|++|++|+|+|.+|+.+...+..+ ..... ........+.+.+.+.+||+||++|++|+
T Consensus 314 ~~~~~~a~~rl~~eEl~~~ql~l~~~r~~~-----------~~~~~-----~~~~~~~~~~~~~~~~lpf~lt~~Q~~ai 377 (780)
T 1gm5_A 314 FYHLEKARERLAYEELFVLQLAFQKIRKER-----------EKHGG-----IPKKIEGKLAEEFIKSLPFKLTNAQKRAH 377 (780)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHCC-----CCCCCCTHHHHHHHHHSSSCCCHHHHHHH
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-----------HhccC-----CCCCCchHHHHHHHHhCCCCCCHHHHHHH
Confidence 999999999999999999999886444321 00111 11223457889999999999999999999
Q ss_pred HHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEe
Q 045263 521 SEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLT 600 (742)
Q Consensus 521 ~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~ 600 (742)
++|.+++.++.+|+++++||||||||++|+++++..+.+|.|++||+||++||.|+++++.+++...+ +++++++
T Consensus 378 ~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~g-----i~v~~l~ 452 (780)
T 1gm5_A 378 QEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFN-----IHVALLI 452 (780)
T ss_dssp HHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSS-----CCEEECC
T ss_pred HHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcC-----ceEEEEe
Confidence 99999998888899999999999999999999999999999999999999999999999999998777 8999999
Q ss_pred CCCChHHHHHHHHHhhcCCccEEEechHHHhhccccCCccEEEEeCCccccccchhhhhhhhhccccccccccccCCCCC
Q 045263 601 GSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSP 680 (742)
Q Consensus 601 G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~~v~~~~l~LVIIDEaHrfG~~qr~~l~~k~~~~~~~~~~~~~~~~~~~ 680 (742)
|+.+.+++...+..+.+|+++|+||||+.+++.+.+.++++|||||+|+||+.++..+..+
T Consensus 453 G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~lVVIDEaHr~g~~qr~~l~~~------------------- 513 (780)
T 1gm5_A 453 GATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVIIDEQHRFGVKQREALMNK------------------- 513 (780)
T ss_dssp SSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEEEESCCCC-----CCCCSS-------------------
T ss_pred CCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCceEEecccchhhHHHHHHHHHh-------------------
Confidence 9999999999999999999999999999999989999999999999999999988655432
Q ss_pred CCCCCCCCcEEEEcCCCCHHHHHHHHcCCCCeeeeccCCCCCCCcEEEEEcCCc
Q 045263 681 KDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNE 734 (742)
Q Consensus 681 r~~~~~~p~vL~mSATPiprtla~~l~gdl~~s~I~e~P~gr~~i~t~~~~~~~ 734 (742)
...+++|+|||||+|+++++..+|+++++.++++|++|.+|.+.++..+.
T Consensus 514 ----~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~~ 563 (780)
T 1gm5_A 514 ----GKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPGRKEVQTMLVPMDR 563 (780)
T ss_dssp ----SSCCCEEEEESSCCCHHHHHHHTCCSSCEEECCCCSSCCCCEECCCCSST
T ss_pred ----CCCCCEEEEeCCCCHHHHHHHHhCCcceeeeeccCCCCcceEEEEeccch
Confidence 13578999999999999999999999999999999999999998876544
No 2
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.96 E-value=3.5e-28 Score=300.85 Aligned_cols=212 Identities=35% Similarity=0.560 Sum_probs=193.6
Q ss_pred CchHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcccHHHHHH
Q 045263 496 GWSSLTKKLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQ 575 (742)
Q Consensus 496 ~~~~l~~~~~~~lpf~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT~~La~Q 575 (742)
....+.+.|.+.+||++|++|.+|++.+++++.++.||+++++||||+|||.+|+.+++..+..|.+++|++||++|++|
T Consensus 588 ~~~~~~~~~~~~f~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q 667 (1151)
T 2eyq_A 588 HDREQYQLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQ 667 (1151)
T ss_dssp CCHHHHHHHHHTCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHH
T ss_pred CCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHH
Confidence 44567888999999999999999999999999888889999999999999999999999988999999999999999999
Q ss_pred HHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhhccccCCccEEEEeCCccccccch
Q 045263 576 HYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQR 655 (742)
Q Consensus 576 ~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~~v~~~~l~LVIIDEaHrfG~~qr 655 (742)
|++++.+++..++ +++..++|..+.+++...+..+.+|.++|+||||+.+...+.++++++|||||+|+||+.++
T Consensus 668 ~~~~~~~~~~~~~-----i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~~~~~l~lvIiDEaH~~g~~~~ 742 (1151)
T 2eyq_A 668 HYDNFRDRFANWP-----VRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGLLIVDEEHRFGVRHK 742 (1151)
T ss_dssp HHHHHHHHSTTTT-----CCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEEEEEESGGGSCHHHH
T ss_pred HHHHHHHHhhcCC-----CeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCccccccceEEEechHhcChHHH
Confidence 9999999988776 88999999999999999999999999999999999998888999999999999999999887
Q ss_pred hhhhhhhhccccccccccccCCCCCCCCCCCCCcEEEEcCCCCHHHHHHHHcCCCCeeeeccCCCCCCCcEEEEEcCCcc
Q 045263 656 GRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGNEK 735 (742)
Q Consensus 656 ~~l~~k~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPiprtla~~l~gdl~~s~I~e~P~gr~~i~t~~~~~~~~ 735 (742)
..+.... ..+++|+|||||+|+++.++..|..+.+.+...|.+|.++.+++...+..
T Consensus 743 ~~l~~l~-----------------------~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~r~~i~~~~~~~~~~ 799 (1151)
T 2eyq_A 743 ERIKAMR-----------------------ANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYDSM 799 (1151)
T ss_dssp HHHHHHH-----------------------TTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCCBCBCEEEEEEECCHH
T ss_pred HHHHHhc-----------------------CCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCCCccccEEEEecCCHH
Confidence 7665431 24689999999999999999999999999999999999999998876543
No 3
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.89 E-value=3.5e-22 Score=208.54 Aligned_cols=174 Identities=20% Similarity=0.298 Sum_probs=133.7
Q ss_pred hHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHh-------cCCeEEEEccc
Q 045263 498 SSLTKKLLRALPYS-LTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIG-------SGYQAAFMVPT 569 (742)
Q Consensus 498 ~~l~~~~~~~lpf~-Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~-------~g~qvlilaPT 569 (742)
+.+.+. +..++|. |+++|.++++.++.+ .++++++|||||||++|++|++..+. .+.+++|++||
T Consensus 63 ~~l~~~-l~~~g~~~~~~~Q~~~i~~~~~~------~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt 135 (262)
T 3ly5_A 63 ENTLKA-IKEMGFTNMTEIQHKSIRPLLEG------RDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPT 135 (262)
T ss_dssp HHHHHH-HHHTTCCBCCHHHHHHHHHHHHT------CCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSS
T ss_pred HHHHHH-HHHCCCCCCCHHHHHHHHHHhCC------CcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCC
Confidence 344444 4558887 999999999999985 27899999999999999999998875 47899999999
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhh------ccccCCccEEE
Q 045263 570 ELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAE------KVEFSALRLAI 643 (742)
Q Consensus 570 ~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~------~v~~~~l~LVI 643 (742)
++|+.|+++.+++++...+ ..+..++|+........ .+..+ ++|+||||+.+.+ ...+.++++||
T Consensus 136 ~~La~q~~~~~~~~~~~~~-----~~~~~~~g~~~~~~~~~---~~~~~-~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lV 206 (262)
T 3ly5_A 136 RELAMQTFGVLKELMTHHV-----HTYGLIMGGSNRSAEAQ---KLGNG-INIIVATPGRLLDHMQNTPGFMYKNLQCLV 206 (262)
T ss_dssp HHHHHHHHHHHHHHTTTCC-----SCEEEECSSSCHHHHHH---HHHHC-CSEEEECHHHHHHHHHHCTTCCCTTCCEEE
T ss_pred HHHHHHHHHHHHHHHhhcC-----ceEEEEECCCCHHHHHH---HhcCC-CCEEEEcHHHHHHHHHccCCcccccCCEEE
Confidence 9999999999999988776 78899999887655443 33445 8999999998854 34678899999
Q ss_pred EeCCccccccch-hhhhhhhhccccccccccccCCCCCCCCCCCCCcEEEEcCCCCHHHHHHHH
Q 045263 644 VDEQQRFGVVQR-GRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALAL 706 (742)
Q Consensus 644 IDEaHrfG~~qr-~~l~~k~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPiprtla~~l 706 (742)
|||||++..... ..+.... ......+++++||||+.++...++.
T Consensus 207 iDEah~l~~~~~~~~l~~i~-------------------~~~~~~~q~l~~SAT~~~~v~~~~~ 251 (262)
T 3ly5_A 207 IDEADRILDVGFEEELKQII-------------------KLLPTRRQTMLFSATQTRKVEDLAR 251 (262)
T ss_dssp ECSHHHHHHTTCHHHHHHHH-------------------HHSCSSSEEEEECSSCCHHHHHHHH
T ss_pred EcChHHHhhhhHHHHHHHHH-------------------HhCCCCCeEEEEEecCCHHHHHHHH
Confidence 999999643222 2221111 0112357899999998887766553
No 4
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.89 E-value=5.2e-22 Score=204.00 Aligned_cols=172 Identities=18% Similarity=0.171 Sum_probs=132.7
Q ss_pred HHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhc--------CCeEEEEcccH
Q 045263 500 LTKKLLRALPYS-LTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGS--------GYQAAFMVPTE 570 (742)
Q Consensus 500 l~~~~~~~lpf~-Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~--------g~qvlilaPT~ 570 (742)
.....+..++|. ||++|.++++.++++ .++++++|||||||++|++|++..+.. +.+++|++||+
T Consensus 39 ~l~~~l~~~g~~~~~~~Q~~~i~~~~~g------~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~ 112 (242)
T 3fe2_A 39 NVMDVIARQNFTEPTAIQAQGWPVALSG------LDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTR 112 (242)
T ss_dssp HHHHHHHTTTCCSCCHHHHHHHHHHHHT------CCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHhCC------CCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcH
Confidence 334445668887 999999999999975 388999999999999999999988763 67899999999
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhh-----ccccCCccEEEEe
Q 045263 571 LLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAE-----KVEFSALRLAIVD 645 (742)
Q Consensus 571 ~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~-----~v~~~~l~LVIID 645 (742)
+|+.|+++.+.++....+ +++..++|+.+.......+ ..+ ++|+|+||+.+.+ ...+.+++++|||
T Consensus 113 ~L~~Q~~~~~~~~~~~~~-----~~~~~~~g~~~~~~~~~~~---~~~-~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViD 183 (242)
T 3fe2_A 113 ELAQQVQQVAAEYCRACR-----LKSTCIYGGAPKGPQIRDL---ERG-VEICIATPGRLIDFLECGKTNLRRTTYLVLD 183 (242)
T ss_dssp HHHHHHHHHHHHHHHHTT-----CCEEEECTTSCHHHHHHHH---HHC-CSEEEECHHHHHHHHHHTSCCCTTCCEEEET
T ss_pred HHHHHHHHHHHHHHhhcC-----ceEEEEECCCChHHHHHHh---cCC-CCEEEECHHHHHHHHHcCCCCcccccEEEEe
Confidence 999999999999988777 7899999998876655433 333 8999999998854 3468899999999
Q ss_pred CCccccccch-hhhhhhhhccccccccccccCCCCCCCCCCCCCcEEEEcCCCCHHHHHHH
Q 045263 646 EQQRFGVVQR-GRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALA 705 (742)
Q Consensus 646 EaHrfG~~qr-~~l~~k~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPiprtla~~ 705 (742)
|+|++..... ..+..-. ......+++++||||+.+.....+
T Consensus 184 Eah~l~~~~~~~~~~~i~-------------------~~~~~~~q~~~~SAT~~~~~~~~~ 225 (242)
T 3fe2_A 184 EADRMLDMGFEPQIRKIV-------------------DQIRPDRQTLMWSATWPKEVRQLA 225 (242)
T ss_dssp THHHHHHTTCHHHHHHHH-------------------TTSCSSCEEEEEESCCCHHHHHHH
T ss_pred CHHHHhhhCcHHHHHHHH-------------------HhCCccceEEEEEeecCHHHHHHH
Confidence 9999743222 2221111 112235789999999766655444
No 5
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.88 E-value=7e-23 Score=225.99 Aligned_cols=142 Identities=19% Similarity=0.245 Sum_probs=124.9
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHH
Q 045263 498 SSLTKKLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHY 577 (742)
Q Consensus 498 ~~l~~~~~~~lpf~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT~~La~Q~~ 577 (742)
+.+.+.+.+.++|+||++|+++++.++++ .++++++|||||||++|+.+++.....+.+++|++||++|+.|++
T Consensus 8 ~~~~~~l~~~~~~~~~~~Q~~~i~~i~~~------~~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~ 81 (414)
T 3oiy_A 8 EDFRSFFKKKFGKDLTGYQRLWAKRIVQG------KSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTL 81 (414)
T ss_dssp HHHHHHHHHHHSSCCCHHHHHHHHHHTTT------CCEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHhcC------CCEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHH
Confidence 34556667778999999999999999864 388999999999999999999888888999999999999999999
Q ss_pred HHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhh---ccccCCccEEEEeCCcccc
Q 045263 578 EHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAE---KVEFSALRLAIVDEQQRFG 651 (742)
Q Consensus 578 ~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~---~v~~~~l~LVIIDEaHrfG 651 (742)
+.+.++.. .+ +++..++|+.+..++...+..+.+|+++|+|+||+.+.+ .+.+.++++|||||+|++.
T Consensus 82 ~~~~~~~~-~~-----~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEaH~~~ 152 (414)
T 3oiy_A 82 ERLQKLAD-EK-----VKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVL 152 (414)
T ss_dssp HHHHHHCC-SS-----CCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEEESCHHHHH
T ss_pred HHHHHHcc-CC-----ceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccEEEEeChHhhh
Confidence 99999876 55 899999999999888888888889999999999999844 4567899999999999753
No 6
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.87 E-value=3.1e-21 Score=192.12 Aligned_cols=175 Identities=19% Similarity=0.214 Sum_probs=129.9
Q ss_pred hHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhc---CCeEEEEcccHHHH
Q 045263 498 SSLTKKLLRALPYS-LTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGS---GYQAAFMVPTELLA 573 (742)
Q Consensus 498 ~~l~~~~~~~lpf~-Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~---g~qvlilaPT~~La 573 (742)
+.+.+. +..++|. |+++|+++++.++++ .++++++|||||||.+|+++++..+.. +.+++|++||++|+
T Consensus 12 ~~l~~~-l~~~g~~~~~~~Q~~~i~~~~~~------~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~ 84 (206)
T 1vec_A 12 RELLMG-IFEMGWEKPSPIQEESIPIALSG------RDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELA 84 (206)
T ss_dssp HHHHHH-HHTTTCCSCCHHHHHHHHHHHTT------CCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHH
T ss_pred HHHHHH-HHHCCCCCCCHHHHHHHHHHccC------CCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHH
Confidence 344444 4568885 999999999999874 378999999999999999999887643 56899999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhh-----ccccCCccEEEEeCCc
Q 045263 574 TQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAE-----KVEFSALRLAIVDEQQ 648 (742)
Q Consensus 574 ~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~-----~v~~~~l~LVIIDEaH 648 (742)
+|+++.+.++....+ ..++..++|+....+... .+ .+.++|+|+||+.+.+ ...+.++++||+||+|
T Consensus 85 ~q~~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~---~~-~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah 156 (206)
T 1vec_A 85 LQVSQICIQVSKHMG----GAKVMATTGGTNLRDDIM---RL-DDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEAD 156 (206)
T ss_dssp HHHHHHHHHHTTTSS----SCCEEEECSSSCHHHHHH---HT-TSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHH
T ss_pred HHHHHHHHHHHhhcC----CceEEEEeCCccHHHHHH---hc-CCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChH
Confidence 999999999887652 178889999887654432 22 3458999999998844 3457789999999999
Q ss_pred cccccchhhhhhhhhccccccccccccCCCCCCCCCCCCCcEEEEcCCCCHHHHHHH
Q 045263 649 RFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALA 705 (742)
Q Consensus 649 rfG~~qr~~l~~k~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPiprtla~~ 705 (742)
++.............. .....+++++||||+.+.....+
T Consensus 157 ~~~~~~~~~~l~~i~~------------------~~~~~~~~l~~SAT~~~~~~~~~ 195 (206)
T 1vec_A 157 KLLSQDFVQIMEDIIL------------------TLPKNRQILLYSATFPLSVQKFM 195 (206)
T ss_dssp HHTSTTTHHHHHHHHH------------------HSCTTCEEEEEESCCCHHHHHHH
T ss_pred HhHhhCcHHHHHHHHH------------------hCCccceEEEEEeeCCHHHHHHH
Confidence 9754332222121100 11235689999999876665544
No 7
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.87 E-value=2.2e-21 Score=195.68 Aligned_cols=175 Identities=21% Similarity=0.245 Sum_probs=131.4
Q ss_pred hHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhc---CCeEEEEcccHHHH
Q 045263 498 SSLTKKLLRALPYS-LTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGS---GYQAAFMVPTELLA 573 (742)
Q Consensus 498 ~~l~~~~~~~lpf~-Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~---g~qvlilaPT~~La 573 (742)
..+.+. +..++|. |+++|+++++.++++ .++++++|||+|||.+|+++++..+.. +.+++|++||++|+
T Consensus 23 ~~l~~~-l~~~g~~~~~~~Q~~~i~~~~~~------~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~ 95 (220)
T 1t6n_A 23 PELLRA-IVDCGFEHPSEVQHECIPQAILG------MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELA 95 (220)
T ss_dssp HHHHHH-HHHTTCCCCCHHHHHHHHHHHTT------CCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHH
T ss_pred HHHHHH-HHHCCCCCCCHHHHHHHHHHhCC------CCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHH
Confidence 344444 4568887 999999999999874 378999999999999999999988654 35899999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhh-----ccccCCccEEEEeCCc
Q 045263 574 TQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAE-----KVEFSALRLAIVDEQQ 648 (742)
Q Consensus 574 ~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~-----~v~~~~l~LVIIDEaH 648 (742)
.|+++.+.++..... ++++..++|+.....+... +.++.++|+|+||+.+.+ ...+.++++||+||+|
T Consensus 96 ~q~~~~~~~~~~~~~----~~~v~~~~g~~~~~~~~~~---~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah 168 (220)
T 1t6n_A 96 FQISKEYERFSKYMP----NVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECD 168 (220)
T ss_dssp HHHHHHHHHHTTTST----TCCEEEESCCSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHH
T ss_pred HHHHHHHHHHHhhCC----CceEEEEeCCCChHHHHHH---HhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHH
Confidence 999999999876541 1789999999886655443 445668999999998854 3467889999999999
Q ss_pred cccc--cchhhhhhhhhccccccccccccCCCCCCCCCCCCCcEEEEcCCCCHHHHHHH
Q 045263 649 RFGV--VQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALA 705 (742)
Q Consensus 649 rfG~--~qr~~l~~k~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPiprtla~~ 705 (742)
++.. ..+..+.... . .....+++++|||||.++...++
T Consensus 169 ~~~~~~~~~~~~~~i~-~------------------~~~~~~~~i~~SAT~~~~~~~~~ 208 (220)
T 1t6n_A 169 KMLEQLDMRRDVQEIF-R------------------MTPHEKQVMMFSATLSKEIRPVC 208 (220)
T ss_dssp HHHSSHHHHHHHHHHH-H------------------TSCSSSEEEEEESCCCTTTHHHH
T ss_pred HHhcccCcHHHHHHHH-H------------------hCCCcCeEEEEEeecCHHHHHHH
Confidence 9743 1122222111 0 11235789999999876554443
No 8
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.87 E-value=3.5e-21 Score=196.55 Aligned_cols=173 Identities=22% Similarity=0.272 Sum_probs=128.5
Q ss_pred hHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHh-------cCCeEEEEccc
Q 045263 498 SSLTKKLLRALPYS-LTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIG-------SGYQAAFMVPT 569 (742)
Q Consensus 498 ~~l~~~~~~~lpf~-Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~-------~g~qvlilaPT 569 (742)
..+.+. +...+|. |+++|+++++.++++ .++++++|||||||.+|+++++..+. .+.+++|++||
T Consensus 34 ~~l~~~-l~~~~~~~~~~~Q~~~i~~~~~~------~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt 106 (236)
T 2pl3_A 34 KKTLKG-LQEAQYRLVTEIQKQTIGLALQG------KDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPT 106 (236)
T ss_dssp HHHHHH-HHHTTCCBCCHHHHHHHHHHHTT------CCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSS
T ss_pred HHHHHH-HHHCCCCCCCHHHHHHHHHHhCC------CCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCC
Confidence 344444 4567875 999999999999864 37899999999999999999988763 47899999999
Q ss_pred HHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhh------ccccCCccEEE
Q 045263 570 ELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAE------KVEFSALRLAI 643 (742)
Q Consensus 570 ~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~------~v~~~~l~LVI 643 (742)
++|+.|+++.+.++....+ +++..++|+.........+ +.++|+|+||+.+.+ ...+.++++||
T Consensus 107 ~~L~~q~~~~~~~~~~~~~-----~~~~~~~g~~~~~~~~~~~-----~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lV 176 (236)
T 2pl3_A 107 RELAYQTFEVLRKVGKNHD-----FSAGLIIGGKDLKHEAERI-----NNINILVCTPGRLLQHMDETVSFHATDLQMLV 176 (236)
T ss_dssp HHHHHHHHHHHHHHTTTSS-----CCEEEECCC--CHHHHHHH-----TTCSEEEECHHHHHHHHHHCSSCCCTTCCEEE
T ss_pred HHHHHHHHHHHHHHhCCCC-----eeEEEEECCCCHHHHHHhC-----CCCCEEEECHHHHHHHHHhcCCcccccccEEE
Confidence 9999999999999887665 7889999987765444322 358999999998854 24567899999
Q ss_pred EeCCccccccch-hhhhhhhhccccccccccccCCCCCCCCCCCCCcEEEEcCCCCHHHHHHHH
Q 045263 644 VDEQQRFGVVQR-GRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALAL 706 (742)
Q Consensus 644 IDEaHrfG~~qr-~~l~~k~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPiprtla~~l 706 (742)
+||+|++..... ..+.... ......+++++||||+.+....++.
T Consensus 177 iDEah~~~~~~~~~~~~~i~-------------------~~~~~~~~~l~~SAT~~~~~~~~~~ 221 (236)
T 2pl3_A 177 LDEADRILDMGFADTMNAVI-------------------ENLPKKRQTLLFSATQTKSVKDLAR 221 (236)
T ss_dssp ETTHHHHHHTTTHHHHHHHH-------------------HTSCTTSEEEEEESSCCHHHHHHHH
T ss_pred EeChHHHhcCCcHHHHHHHH-------------------HhCCCCCeEEEEEeeCCHHHHHHHH
Confidence 999998742221 2221110 0112356899999998777655543
No 9
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.87 E-value=1.5e-21 Score=200.21 Aligned_cols=175 Identities=22% Similarity=0.231 Sum_probs=124.8
Q ss_pred hHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHh---cCCeEEEEcccHHHH
Q 045263 498 SSLTKKLLRALPYS-LTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIG---SGYQAAFMVPTELLA 573 (742)
Q Consensus 498 ~~l~~~~~~~lpf~-Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~---~g~qvlilaPT~~La 573 (742)
..+.+. +..++|. |+++|+++++.++++ .++++++|||||||.+|+++++..+. .+.+++|++||++|+
T Consensus 39 ~~l~~~-l~~~g~~~~~~~Q~~ai~~i~~~------~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~ 111 (237)
T 3bor_A 39 ESLLRG-IYAYGFEKPSAIQQRAIIPCIKG------YDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELA 111 (237)
T ss_dssp HHHHHH-HHHHTCCSCCHHHHHHHHHHHTT------CCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHH
T ss_pred HHHHHH-HHHCCCCCCCHHHHHHHHHHhCC------CCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHH
Confidence 344444 4567887 999999999999874 37899999999999999999998875 357999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhh-----ccccCCccEEEEeCCc
Q 045263 574 TQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAE-----KVEFSALRLAIVDEQQ 648 (742)
Q Consensus 574 ~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~-----~v~~~~l~LVIIDEaH 648 (742)
.|+++.++++....+ +.+..+.|+...... +..+..+.++|+|+||+.+.+ ...+.++++||+||+|
T Consensus 112 ~q~~~~~~~~~~~~~-----~~~~~~~g~~~~~~~---~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah 183 (237)
T 3bor_A 112 QQIQKVILALGDYMG-----ATCHACIGGTNVRNE---MQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEAD 183 (237)
T ss_dssp HHHHHHHHHHTTTTT-----CCEEEECC----------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHH
T ss_pred HHHHHHHHHHhhhcC-----ceEEEEECCCchHHH---HHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCch
Confidence 999999999887655 678888887654333 234556778999999998754 3457789999999999
Q ss_pred cccccch-hhhhhhhhccccccccccccCCCCCCCCCCCCCcEEEEcCCCCHHHHHHHH
Q 045263 649 RFGVVQR-GRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALAL 706 (742)
Q Consensus 649 rfG~~qr-~~l~~k~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPiprtla~~l 706 (742)
++..... ..+.... . .....+++++||||+.+.....+.
T Consensus 184 ~~~~~~~~~~l~~i~-~------------------~~~~~~~~i~~SAT~~~~~~~~~~ 223 (237)
T 3bor_A 184 EMLSRGFKDQIYEIF-Q------------------KLNTSIQVVLLSATMPTDVLEVTK 223 (237)
T ss_dssp HHHHTTCHHHHHHHH-H------------------HSCTTCEEEEECSSCCHHHHHHHH
T ss_pred HhhccCcHHHHHHHH-H------------------hCCCCCeEEEEEEecCHHHHHHHH
Confidence 8743222 2221110 0 012356899999998776655443
No 10
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.86 E-value=4.6e-21 Score=194.58 Aligned_cols=172 Identities=19% Similarity=0.179 Sum_probs=123.2
Q ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHh---------cCCeEEEEcc
Q 045263 499 SLTKKLLRALPY-SLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIG---------SGYQAAFMVP 568 (742)
Q Consensus 499 ~l~~~~~~~lpf-~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~---------~g~qvlilaP 568 (742)
.+.+.+ ..++| .||++|+++++.++++ .++++++|||||||++|+++++..+. .+.+++|++|
T Consensus 30 ~l~~~l-~~~g~~~~~~~Q~~~i~~~~~~------~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~P 102 (228)
T 3iuy_A 30 DLLKSI-IRVGILKPTPIQSQAWPIILQG------IDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTP 102 (228)
T ss_dssp HHHHHH-HHHTCCSCCHHHHHHHHHHHTT------CCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECS
T ss_pred HHHHHH-HHCCCCCCCHHHHHHHHHHhCC------CCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeC
Confidence 344444 44577 5999999999999864 37899999999999999999988764 4678999999
Q ss_pred cHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhh-----ccccCCccEEE
Q 045263 569 TELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAE-----KVEFSALRLAI 643 (742)
Q Consensus 569 T~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~-----~v~~~~l~LVI 643 (742)
|++|+.|+++.+.++.. .+ +++..++|+......... +..+ ++|+|+||+.+.+ ...+.++++||
T Consensus 103 t~~L~~q~~~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~---~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~lV 172 (228)
T 3iuy_A 103 TRELALHVEAECSKYSY-KG-----LKSICIYGGRNRNGQIED---ISKG-VDIIIATPGRLNDLQMNNSVNLRSITYLV 172 (228)
T ss_dssp SHHHHHHHHHHHHHHCC-TT-----CCEEEECC------CHHH---HHSC-CSEEEECHHHHHHHHHTTCCCCTTCCEEE
T ss_pred CHHHHHHHHHHHHHhcc-cC-----ceEEEEECCCChHHHHHH---hcCC-CCEEEECHHHHHHHHHcCCcCcccceEEE
Confidence 99999999999999752 23 678888888765544332 3334 8999999998854 44578899999
Q ss_pred EeCCccccccch-hhhhhhhhccccccccccccCCCCCCCCCCCCCcEEEEcCCCCHHHHHHHH
Q 045263 644 VDEQQRFGVVQR-GRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALAL 706 (742)
Q Consensus 644 IDEaHrfG~~qr-~~l~~k~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPiprtla~~l 706 (742)
|||+|++..... ..+.... ......+++++||||..+.....+.
T Consensus 173 iDEah~~~~~~~~~~~~~i~-------------------~~~~~~~~~l~~SAT~~~~~~~~~~ 217 (228)
T 3iuy_A 173 IDEADKMLDMEFEPQIRKIL-------------------LDVRPDRQTVMTSATWPDTVRQLAL 217 (228)
T ss_dssp ECCHHHHHHTTCHHHHHHHH-------------------HHSCSSCEEEEEESCCCHHHHHHHH
T ss_pred EECHHHHhccchHHHHHHHH-------------------HhCCcCCeEEEEEeeCCHHHHHHHH
Confidence 999999743322 2222111 0112357899999997666555543
No 11
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.86 E-value=3.8e-21 Score=196.10 Aligned_cols=169 Identities=24% Similarity=0.238 Sum_probs=127.0
Q ss_pred HHHHHhCCCC-CCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhc---CCeEEEEcccHHHHHHHH
Q 045263 502 KKLLRALPYS-LTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGS---GYQAAFMVPTELLATQHY 577 (742)
Q Consensus 502 ~~~~~~lpf~-Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~---g~qvlilaPT~~La~Q~~ 577 (742)
...+..++|. |+++|+++++.++++ .++++++|||||||++|+++++..+.. +.+++|++||++|+.|++
T Consensus 36 ~~~l~~~g~~~~~~~Q~~~i~~~~~~------~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~ 109 (230)
T 2oxc_A 36 LEGLRAAGFERPSPVQLKAIPLGRCG------LDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIH 109 (230)
T ss_dssp HHHHHHTTCCSCCHHHHHHHHHHHTT------CCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHH
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhCC------CCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHH
Confidence 3445678997 999999999998874 378999999999999999999887643 579999999999999999
Q ss_pred HHHHHhhhhc-cCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhh-----ccccCCccEEEEeCCcccc
Q 045263 578 EHLLKLLDNM-EEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAE-----KVEFSALRLAIVDEQQRFG 651 (742)
Q Consensus 578 ~~l~~~l~~~-~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~-----~v~~~~l~LVIIDEaHrfG 651 (742)
+.+.++.... + +++..++|+....++...+ ..++|+|+||+.+.+ ...+.++++|||||+|++.
T Consensus 110 ~~~~~~~~~~~~-----~~~~~~~g~~~~~~~~~~~-----~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~ 179 (230)
T 2oxc_A 110 SVITAIGIKMEG-----LECHVFIGGTPLSQDKTRL-----KKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLL 179 (230)
T ss_dssp HHHHHHTTTSTT-----CCEEEECTTSCHHHHHHHT-----TSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHH
T ss_pred HHHHHHhcccCC-----ceEEEEeCCCCHHHHHHhc-----cCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhh
Confidence 9999987654 3 7899999998876554432 248999999998854 3456788999999999974
Q ss_pred ccc--hhhhhhhhhccccccccccccCCCCCCCCCCCCCcEEEEcCCCCHHHHHHHH
Q 045263 652 VVQ--RGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALAL 706 (742)
Q Consensus 652 ~~q--r~~l~~k~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPiprtla~~l 706 (742)
... +..+..-. ......+++++||||+.++ +....
T Consensus 180 ~~~~~~~~~~~i~-------------------~~~~~~~~~l~lSAT~~~~-~~~~~ 216 (230)
T 2oxc_A 180 EEGSFQEQINWIY-------------------SSLPASKQMLAVSATYPEF-LANAL 216 (230)
T ss_dssp STTSSHHHHHHHH-------------------HHSCSSCEEEEEESCCCHH-HHHHH
T ss_pred cCcchHHHHHHHH-------------------HhCCCCCeEEEEEeccCHH-HHHHH
Confidence 321 22221110 0112356899999997555 44443
No 12
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.86 E-value=5.6e-21 Score=193.03 Aligned_cols=173 Identities=23% Similarity=0.234 Sum_probs=123.8
Q ss_pred hHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhc---CCeEEEEcccHHHH
Q 045263 498 SSLTKKLLRALPYS-LTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGS---GYQAAFMVPTELLA 573 (742)
Q Consensus 498 ~~l~~~~~~~lpf~-Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~---g~qvlilaPT~~La 573 (742)
+.+.+.+ ..++|. |+++|+++++.+.++ .++++++|||||||.+|+++++..+.. +.+++|++||++|+
T Consensus 23 ~~l~~~l-~~~g~~~~~~~Q~~~i~~~~~~------~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~ 95 (224)
T 1qde_A 23 ENLLRGV-FGYGFEEPSAIQQRAIMPIIEG------HDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELA 95 (224)
T ss_dssp HHHHHHH-HHHTCCSCCHHHHHHHHHHHTT------CCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHH
T ss_pred HHHHHHH-HHCCCCCCcHHHHHHHHHHhcC------CCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHH
Confidence 4444444 556775 999999999999874 378999999999999999999987743 56999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhh-----ccccCCccEEEEeCCc
Q 045263 574 TQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAE-----KVEFSALRLAIVDEQQ 648 (742)
Q Consensus 574 ~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~-----~v~~~~l~LVIIDEaH 648 (742)
.|+++.+.++....+ +++..++|+....+.... +. .++|+|+||+.+.+ ...+.++++||+||+|
T Consensus 96 ~q~~~~~~~~~~~~~-----~~~~~~~g~~~~~~~~~~---~~--~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah 165 (224)
T 1qde_A 96 LQIQKVVMALAFHMD-----IKVHACIGGTSFVEDAEG---LR--DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEAD 165 (224)
T ss_dssp HHHHHHHHHHTTTSC-----CCEEEECC-------------CT--TCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHH
T ss_pred HHHHHHHHHHhcccC-----ceEEEEeCCcchHHHHhc---CC--CCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChh
Confidence 999999999887666 788999998776544332 22 37999999998744 3457789999999999
Q ss_pred cccccch-hhhhhhhhccccccccccccCCCCCCCCCCCCCcEEEEcCCCCHHHHHHHH
Q 045263 649 RFGVVQR-GRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALAL 706 (742)
Q Consensus 649 rfG~~qr-~~l~~k~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPiprtla~~l 706 (742)
++..... ..+.... . .....+++++||||+.+.....+.
T Consensus 166 ~~~~~~~~~~l~~i~-~------------------~~~~~~~~i~lSAT~~~~~~~~~~ 205 (224)
T 1qde_A 166 EMLSSGFKEQIYQIF-T------------------LLPPTTQVVLLSATMPNDVLEVTT 205 (224)
T ss_dssp HHHHTTCHHHHHHHH-H------------------HSCTTCEEEEEESSCCHHHHHHHH
T ss_pred HHhhhhhHHHHHHHH-H------------------hCCccCeEEEEEeecCHHHHHHHH
Confidence 9743222 2222111 0 112356899999998876555443
No 13
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.86 E-value=7.4e-21 Score=196.30 Aligned_cols=171 Identities=19% Similarity=0.180 Sum_probs=125.8
Q ss_pred HhCCCC-CCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhc------------CCeEEEEcccHHH
Q 045263 506 RALPYS-LTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGS------------GYQAAFMVPTELL 572 (742)
Q Consensus 506 ~~lpf~-Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~------------g~qvlilaPT~~L 572 (742)
..++|. |+++|.++++.++++ .++++++|||||||++|+++++..+.. +.+++|++||++|
T Consensus 39 ~~~g~~~~~~~Q~~~i~~i~~~------~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L 112 (253)
T 1wrb_A 39 LLASYQRPTPIQKNAIPAILEH------RDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTREL 112 (253)
T ss_dssp TTTTCCSCCHHHHHHHHHHHTT------CCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHH
T ss_pred HHCCCCCCCHHHHHHHHHHhCC------CCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHH
Confidence 446775 999999999999874 378999999999999999999988753 3589999999999
Q ss_pred HHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhh-----ccccCCccEEEEeCC
Q 045263 573 ATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAE-----KVEFSALRLAIVDEQ 647 (742)
Q Consensus 573 a~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~-----~v~~~~l~LVIIDEa 647 (742)
+.|+++.+.++....+ +++..++|+........ .+. ..++|+|+||+.+.+ ...+.++++||+||+
T Consensus 113 ~~q~~~~~~~~~~~~~-----~~~~~~~g~~~~~~~~~---~~~-~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEa 183 (253)
T 1wrb_A 113 AIQILSESQKFSLNTP-----LRSCVVYGGADTHSQIR---EVQ-MGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEA 183 (253)
T ss_dssp HHHHHHHHHHHHTTSS-----CCEEEECSSSCSHHHHH---HHS-SCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETH
T ss_pred HHHHHHHHHHHhccCC-----ceEEEEECCCCHHHHHH---HhC-CCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCH
Confidence 9999999999887655 78888888877654433 233 348999999998854 346788999999999
Q ss_pred ccccccch-hhhhhhhhccccccccccccCCCCCCCCCCCCCcEEEEcCCCCHHHHHHHH
Q 045263 648 QRFGVVQR-GRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALAL 706 (742)
Q Consensus 648 HrfG~~qr-~~l~~k~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPiprtla~~l 706 (742)
|++..... ..+..-. ... .......+++++|||||.++...++.
T Consensus 184 h~~~~~~~~~~~~~i~-~~~--------------~~~~~~~~q~l~~SAT~~~~~~~~~~ 228 (253)
T 1wrb_A 184 DRMLDMGFEPQIRKII-EES--------------NMPSGINRQTLMFSATFPKEIQKLAA 228 (253)
T ss_dssp HHHHHTTCHHHHHHHH-HSS--------------CCCCGGGCEEEEEESSCCHHHHHHHH
T ss_pred HHHHhCchHHHHHHHH-hhc--------------cCCCCCCcEEEEEEEeCCHHHHHHHH
Confidence 99743222 1111110 000 00000146899999998777555443
No 14
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.86 E-value=1.5e-20 Score=194.77 Aligned_cols=171 Identities=19% Similarity=0.185 Sum_probs=129.5
Q ss_pred HHHHHHhCCC-CCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhc---CCeEEEEcccHHHHHHH
Q 045263 501 TKKLLRALPY-SLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGS---GYQAAFMVPTELLATQH 576 (742)
Q Consensus 501 ~~~~~~~lpf-~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~---g~qvlilaPT~~La~Q~ 576 (742)
..+.++.++| .|+++|+++++.++++ .++++++|||||||++|+++++..+.. +.+++|++||++|+.|+
T Consensus 54 l~~~l~~~g~~~~~~~Q~~~i~~i~~~------~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~ 127 (249)
T 3ber_A 54 LCEACDQLGWTKPTKIQIEAIPLALQG------RDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQI 127 (249)
T ss_dssp HHHHHHHTTCCSCCHHHHHHHHHHHTT------CCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHhCC------CCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHH
Confidence 3444567888 5999999999999874 378999999999999999999887654 45799999999999999
Q ss_pred HHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhh------ccccCCccEEEEeCCccc
Q 045263 577 YEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAE------KVEFSALRLAIVDEQQRF 650 (742)
Q Consensus 577 ~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~------~v~~~~l~LVIIDEaHrf 650 (742)
++.++++....+ +++..++|+......... +. +.++|+|+||+.+.+ ...+.++++||+||+|++
T Consensus 128 ~~~~~~~~~~~~-----~~~~~~~g~~~~~~~~~~---~~-~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l 198 (249)
T 3ber_A 128 SEQFEALGSSIG-----VQSAVIVGGIDSMSQSLA---LA-KKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRI 198 (249)
T ss_dssp HHHHHHHHGGGT-----CCEEEECTTSCHHHHHHH---HH-TCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHH
T ss_pred HHHHHHHhccCC-----eeEEEEECCCChHHHHHH---hc-CCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhh
Confidence 999999987776 789999998876544332 22 358999999998844 345778999999999987
Q ss_pred cccch-hhhhhhhhccccccccccccCCCCCCCCCCCCCcEEEEcCCCCHHHHHHH
Q 045263 651 GVVQR-GRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALA 705 (742)
Q Consensus 651 G~~qr-~~l~~k~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPiprtla~~ 705 (742)
..... ..+.... .......++++||||+.+....++
T Consensus 199 ~~~~~~~~l~~i~-------------------~~~~~~~~~l~~SAT~~~~v~~~~ 235 (249)
T 3ber_A 199 LNMDFETEVDKIL-------------------KVIPRDRKTFLFSATMTKKVQKLQ 235 (249)
T ss_dssp HHTTCHHHHHHHH-------------------HSSCSSSEEEEEESSCCHHHHHHH
T ss_pred hccChHHHHHHHH-------------------HhCCCCCeEEEEeccCCHHHHHHH
Confidence 43222 2221111 011235689999999877665544
No 15
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.85 E-value=4.4e-21 Score=193.80 Aligned_cols=174 Identities=23% Similarity=0.220 Sum_probs=125.9
Q ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhc---CCeEEEEcccHHHH
Q 045263 498 SSLTKKLLRALPY-SLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGS---GYQAAFMVPTELLA 573 (742)
Q Consensus 498 ~~l~~~~~~~lpf-~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~---g~qvlilaPT~~La 573 (742)
+.+.+.+ +.++| .|+++|+++++.++++ .++++++|||||||.+|+++++..+.. +.+++|++||++|+
T Consensus 13 ~~l~~~l-~~~g~~~~~~~Q~~~i~~~~~~------~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~ 85 (219)
T 1q0u_A 13 PFIIEAI-KTLRFYKPTEIQERIIPGALRG------ESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELA 85 (219)
T ss_dssp HHHHHHH-HHTTCCSCCHHHHHHHHHHHHT------CCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHH
T ss_pred HHHHHHH-HHCCCCCCCHHHHHHHHHHhCC------CCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHH
Confidence 3455544 55676 4999999999999975 378999999999999999999988653 57899999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhh-----ccccCCccEEEEeCCc
Q 045263 574 TQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAE-----KVEFSALRLAIVDEQQ 648 (742)
Q Consensus 574 ~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~-----~v~~~~l~LVIIDEaH 648 (742)
.|+++.+.++....+ ....+.+..++|+....+... .+ .+.++|+|+||+.+.+ ...+.++++|||||+|
T Consensus 86 ~q~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~---~~-~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah 160 (219)
T 1q0u_A 86 TQIYHETLKITKFCP-KDRMIVARCLIGGTDKQKALE---KL-NVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEAD 160 (219)
T ss_dssp HHHHHHHHHHHTTSC-GGGCCCEEEECCCSHHHHTTC---CC-SSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHH
T ss_pred HHHHHHHHHHhhhcc-cccceEEEEEeCCCCHHHHHH---Hc-CCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCch
Confidence 999999999886542 001267888888876543321 12 2358999999998854 3457789999999999
Q ss_pred cccccch-hhhhhhhhccccccccccccCCCCCCCCCCCCCcEEEEcCCCCHHHH
Q 045263 649 RFGVVQR-GRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTL 702 (742)
Q Consensus 649 rfG~~qr-~~l~~k~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPiprtl 702 (742)
++..... ..+..-. ......+++++||||+..+..
T Consensus 161 ~~~~~~~~~~l~~i~-------------------~~~~~~~~~l~~SAT~~~~~~ 196 (219)
T 1q0u_A 161 LMLDMGFITDVDQIA-------------------ARMPKDLQMLVFSATIPEKLK 196 (219)
T ss_dssp HHHHTTCHHHHHHHH-------------------HTSCTTCEEEEEESCCCGGGH
T ss_pred HHhhhChHHHHHHHH-------------------HhCCcccEEEEEecCCCHHHH
Confidence 9743222 1121110 011235689999999765443
No 16
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.85 E-value=1.7e-20 Score=186.79 Aligned_cols=172 Identities=20% Similarity=0.161 Sum_probs=126.4
Q ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHh------cCCeEEEEcccH
Q 045263 498 SSLTKKLLRALPY-SLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIG------SGYQAAFMVPTE 570 (742)
Q Consensus 498 ~~l~~~~~~~lpf-~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~------~g~qvlilaPT~ 570 (742)
+.+.+.+ ...+| .|+++|+++++.+.++ .++++++|||||||.+|+.+++..+. .+.+++|++||+
T Consensus 10 ~~l~~~l-~~~~~~~~~~~Q~~~i~~~~~~------~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~ 82 (207)
T 2gxq_A 10 PEILEAL-HGRGLTTPTPIQAAALPLALEG------KDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTR 82 (207)
T ss_dssp HHHHHHH-HHTTCCSCCHHHHHHHHHHHTT------CCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSH
T ss_pred HHHHHHH-HHcCCCCCCHHHHHHHHHHcCC------CCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCH
Confidence 3444444 55777 5999999999999874 37899999999999999999998864 367899999999
Q ss_pred HHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhh-----ccccCCccEEEEe
Q 045263 571 LLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAE-----KVEFSALRLAIVD 645 (742)
Q Consensus 571 ~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~-----~v~~~~l~LVIID 645 (742)
+|+.|+++.+.+++.. +++..++|+.........+ .. .++|+|+||+.+.+ ...+.++++||+|
T Consensus 83 ~L~~q~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~---~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViD 151 (207)
T 2gxq_A 83 ELALQVASELTAVAPH-------LKVVAVYGGTGYGKQKEAL---LR-GADAVVATPGRALDYLRQGVLDLSRVEVAVLD 151 (207)
T ss_dssp HHHHHHHHHHHHHCTT-------SCEEEECSSSCSHHHHHHH---HH-CCSEEEECHHHHHHHHHHTSSCCTTCSEEEEE
T ss_pred HHHHHHHHHHHHHhhc-------ceEEEEECCCChHHHHHHh---hC-CCCEEEECHHHHHHHHHcCCcchhhceEEEEE
Confidence 9999999999998754 4678888887655443322 22 38999999998744 4567889999999
Q ss_pred CCccccccchhhhhhhhhccccccccccccCCCCCCCCCCCCCcEEEEcCCCCHHHHHHH
Q 045263 646 EQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALA 705 (742)
Q Consensus 646 EaHrfG~~qr~~l~~k~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPiprtla~~ 705 (742)
|+|++.............. .....+++++||||+.+.....+
T Consensus 152 Eah~~~~~~~~~~~~~i~~------------------~~~~~~~~i~~SAT~~~~~~~~~ 193 (207)
T 2gxq_A 152 EADEMLSMGFEEEVEALLS------------------ATPPSRQTLLFSATLPSWAKRLA 193 (207)
T ss_dssp SHHHHHHTTCHHHHHHHHH------------------TSCTTSEEEEECSSCCHHHHHHH
T ss_pred ChhHhhccchHHHHHHHHH------------------hCCccCeEEEEEEecCHHHHHHH
Confidence 9998743322211111100 11235689999999876554433
No 17
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.85 E-value=1.8e-21 Score=199.82 Aligned_cols=167 Identities=17% Similarity=0.203 Sum_probs=123.2
Q ss_pred HHhCCCC-CCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHh----cCCeEEEEcccHHHHHHHHHH
Q 045263 505 LRALPYS-LTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIG----SGYQAAFMVPTELLATQHYEH 579 (742)
Q Consensus 505 ~~~lpf~-Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~----~g~qvlilaPT~~La~Q~~~~ 579 (742)
+...+|. ||++|+++++.++++ .++++++|||||||++|+++++..+. .|.+++|++||++|+.|++++
T Consensus 44 l~~~g~~~~~~~Q~~~i~~~~~~------~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~ 117 (245)
T 3dkp_A 44 ILDAGFQMPTPIQMQAIPVMLHG------RELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRE 117 (245)
T ss_dssp HHHTTCCSCCHHHHHHHHHHHTT------CCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHhCC------CCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHH
Confidence 4557887 999999999999874 37899999999999999999998886 356899999999999999999
Q ss_pred HHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhh-------ccccCCccEEEEeCCccccc
Q 045263 580 LLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAE-------KVEFSALRLAIVDEQQRFGV 652 (742)
Q Consensus 580 l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~-------~v~~~~l~LVIIDEaHrfG~ 652 (742)
+.+++...+ +++..++|+.....+ +.....+.++|+|+||+.+.+ ...+.++++|||||+|++..
T Consensus 118 ~~~~~~~~~-----~~~~~~~~~~~~~~~---~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~ 189 (245)
T 3dkp_A 118 LIKISEGTG-----FRIHMIHKAAVAAKK---FGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFE 189 (245)
T ss_dssp HHHHTTTSC-----CCEECCCHHHHHHTT---TSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHH
T ss_pred HHHHhcccC-----ceEEEEecCccHHHH---hhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcc
Confidence 999987766 677777665432221 112334568999999998854 24678899999999999753
Q ss_pred c----chhhhhhhhhccccccccccccCCCCCCCCCCCCCcEEEEcCCCCHHHHH
Q 045263 653 V----QRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLA 703 (742)
Q Consensus 653 ~----qr~~l~~k~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPiprtla 703 (742)
. .+..+...... ......++++||||+.+....
T Consensus 190 ~~~~~~~~~~~~i~~~------------------~~~~~~~~~~~SAT~~~~v~~ 226 (245)
T 3dkp_A 190 DGKTGFRDQLASIFLA------------------CTSHKVRRAMFSATFAYDVEQ 226 (245)
T ss_dssp HC--CHHHHHHHHHHH------------------CCCTTCEEEEEESSCCHHHHH
T ss_pred cccccHHHHHHHHHHh------------------cCCCCcEEEEEeccCCHHHHH
Confidence 2 22222221100 011246899999997554433
No 18
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.84 E-value=8.8e-20 Score=203.66 Aligned_cols=174 Identities=20% Similarity=0.173 Sum_probs=131.0
Q ss_pred HHHHHHhCCCC-CCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhc--------CCeEEEEcccHH
Q 045263 501 TKKLLRALPYS-LTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGS--------GYQAAFMVPTEL 571 (742)
Q Consensus 501 ~~~~~~~lpf~-Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~--------g~qvlilaPT~~ 571 (742)
+..-+...+|. ||++|++|++.++.+ .+++++++||||||++|++|++..+.. +.+++|++||++
T Consensus 67 l~~~l~~~g~~~pt~iQ~~ai~~i~~g------~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~Ptre 140 (434)
T 2db3_A 67 IIDNVNKSGYKIPTPIQKCSIPVISSG------RDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRE 140 (434)
T ss_dssp HHHHHHHTTCCSCCHHHHHHHHHHHTT------CCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHH
T ss_pred HHHHHHHcCCCCCCHHHHHHHHHHhcC------CCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHH
Confidence 34445668887 999999999999864 388999999999999999999987753 468999999999
Q ss_pred HHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhh-----ccccCCccEEEEeC
Q 045263 572 LATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAE-----KVEFSALRLAIVDE 646 (742)
Q Consensus 572 La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~-----~v~~~~l~LVIIDE 646 (742)
|+.|+++++.++....+ +++..++|+.+....... +.. .++|+|+||+.+.+ ...+.+++++|+||
T Consensus 141 La~Q~~~~~~~~~~~~~-----~~~~~~~gg~~~~~~~~~---l~~-~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDE 211 (434)
T 2db3_A 141 LAIQIFNEARKFAFESY-----LKIGIVYGGTSFRHQNEC---ITR-GCHVVIATPGRLLDFVDRTFITFEDTRFVVLDE 211 (434)
T ss_dssp HHHHHHHHHHHHTTTSS-----CCCCEECTTSCHHHHHHH---HTT-CCSEEEECHHHHHHHHHTTSCCCTTCCEEEEET
T ss_pred HHHHHHHHHHHHhccCC-----cEEEEEECCCCHHHHHHH---hhc-CCCEEEEChHHHHHHHHhCCcccccCCeEEEcc
Confidence 99999999999887665 788899999887655432 333 48999999999855 34578999999999
Q ss_pred Cccccccch-hhhhhhhhccccccccccccCCCCCCCCCCCCCcEEEEcCCCCHHHHHHHH
Q 045263 647 QQRFGVVQR-GRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALAL 706 (742)
Q Consensus 647 aHrfG~~qr-~~l~~k~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPiprtla~~l 706 (742)
+|++..... ..+..-... .......++++||||+.+....++.
T Consensus 212 ah~~~~~gf~~~~~~i~~~-----------------~~~~~~~q~l~~SAT~~~~~~~~~~ 255 (434)
T 2db3_A 212 ADRMLDMGFSEDMRRIMTH-----------------VTMRPEHQTLMFSATFPEEIQRMAG 255 (434)
T ss_dssp HHHHTSTTTHHHHHHHHHC-----------------TTSCSSCEEEEEESCCCHHHHHHHH
T ss_pred HhhhhccCcHHHHHHHHHh-----------------cCCCCCceEEEEeccCCHHHHHHHH
Confidence 999743322 111111000 0012356899999998766554443
No 19
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.84 E-value=1.6e-20 Score=200.18 Aligned_cols=175 Identities=19% Similarity=0.170 Sum_probs=128.3
Q ss_pred hHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhc---CCeEEEEcccHHHH
Q 045263 498 SSLTKKLLRALPYS-LTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGS---GYQAAFMVPTELLA 573 (742)
Q Consensus 498 ~~l~~~~~~~lpf~-Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~---g~qvlilaPT~~La 573 (742)
..+.+.+ ..++|. ||++|.+|++.++.+ .+.++++++|||||||++|++|++..+.. +.+++|++||++||
T Consensus 101 ~~l~~~l-~~~g~~~pt~iQ~~ai~~il~~----~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa 175 (300)
T 3fmo_B 101 PQLLQGV-YAMGFNRPSKIQENALPLMLAE----PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELA 175 (300)
T ss_dssp HHHHHHH-HHTTCCSCCHHHHHHHHHHTSS----SCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHH
T ss_pred HHHHHHH-HHcCCCCCCHHHHHHHHHHHcC----CCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHH
Confidence 3444444 457886 999999999999864 12489999999999999999999988754 35899999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhh------ccccCCccEEEEeCC
Q 045263 574 TQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAE------KVEFSALRLAIVDEQ 647 (742)
Q Consensus 574 ~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~------~v~~~~l~LVIIDEa 647 (742)
.|+++.+..+..... .+.+..+.|+...... ....++|+||||+++.+ .+.+.++++|||||+
T Consensus 176 ~Q~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~-------~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlDEa 244 (300)
T 3fmo_B 176 LQTGKVIEQMGKFYP----ELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEA 244 (300)
T ss_dssp HHHHHHHHHHTTTST----TCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEETTH
T ss_pred HHHHHHHHHHHhhCC----CcEEEEEeCCccHhhh-------hcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEeCH
Confidence 999999999876542 1678888887654322 13457999999999854 345778999999999
Q ss_pred ccccccc--hhhhhhhhhccccccccccccCCCCCCCCCCCCCcEEEEcCCCCHHHHHHHHc
Q 045263 648 QRFGVVQ--RGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALY 707 (742)
Q Consensus 648 HrfG~~q--r~~l~~k~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPiprtla~~l~ 707 (742)
|++.... ...+.... ......+++++||||+......++..
T Consensus 245 d~l~~~~~~~~~~~~i~-------------------~~~~~~~q~i~~SAT~~~~v~~~a~~ 287 (300)
T 3fmo_B 245 DVMIATQGHQDQSIRIQ-------------------RMLPRNCQMLLFSATFEDSVWKFAQK 287 (300)
T ss_dssp HHHHHSTTHHHHHHHHH-------------------TTSCTTCEEEEEESCCCHHHHHHHHH
T ss_pred HHHhhccCcHHHHHHHH-------------------HhCCCCCEEEEEeccCCHHHHHHHHH
Confidence 9974311 11111110 11223578999999987776665543
No 20
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.84 E-value=6.7e-21 Score=234.77 Aligned_cols=141 Identities=18% Similarity=0.235 Sum_probs=123.6
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHH
Q 045263 500 LTKKLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEH 579 (742)
Q Consensus 500 l~~~~~~~lpf~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT~~La~Q~~~~ 579 (742)
+.+.+...++|+||++|++|++.++++ ++++++||||||||++++.+++..+..|.+++|++||++||.|++++
T Consensus 67 ~~~~~~~~~gf~pt~iQ~~ai~~il~g------~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~ 140 (1104)
T 4ddu_A 67 FRSFFKKKFGKDLTGYQRLWAKRIVQG------KSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLER 140 (1104)
T ss_dssp HHHHHHHHSSSCCCHHHHHHHHHHTTT------CCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHcC------CCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHH
Confidence 344556778999999999999999874 38999999999999999999998888899999999999999999999
Q ss_pred HHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhh---ccccCCccEEEEeCCccccc
Q 045263 580 LLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAE---KVEFSALRLAIVDEQQRFGV 652 (742)
Q Consensus 580 l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~---~v~~~~l~LVIIDEaHrfG~ 652 (742)
+.++. ..+ +++..++|+.+..++...+..+.+|+++|+||||+.+.+ .+.+.++++|||||+|++..
T Consensus 141 l~~l~-~~~-----i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~ 210 (1104)
T 4ddu_A 141 LQKLA-DEK-----VKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLK 210 (1104)
T ss_dssp HHTTS-CTT-----SCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTT
T ss_pred HHHhh-CCC-----CeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCcccc
Confidence 99965 444 799999999998888888888999999999999999854 35678999999999998543
No 21
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.83 E-value=1.7e-19 Score=197.69 Aligned_cols=203 Identities=19% Similarity=0.173 Sum_probs=136.2
Q ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhc------------------
Q 045263 499 SLTKKLLRALPY-SLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGS------------------ 559 (742)
Q Consensus 499 ~l~~~~~~~lpf-~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~------------------ 559 (742)
.+.+. +..++| .||++|+++++.++.+ .++++++|||||||++|++|++..+..
T Consensus 25 ~l~~~-l~~~~~~~~~~~Q~~~i~~i~~~------~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 97 (417)
T 2i4i_A 25 IIMGN-IELTRYTRPTPVQKHAIPIIKEK------RDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGR 97 (417)
T ss_dssp HHHHH-HHHHTCCSCCHHHHHHHHHHHTT------CCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBS
T ss_pred HHHHH-HHHCCCCCCCHHHHHHHHHHccC------CCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhcccccccccc
Confidence 34444 455677 5999999999998864 378999999999999999999877643
Q ss_pred ---CCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhh----
Q 045263 560 ---GYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAE---- 632 (742)
Q Consensus 560 ---g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~---- 632 (742)
+.+++|++||++|+.|+++.+.++....+ +++..++|+....+... .+.. .++|+|+||+.+.+
T Consensus 98 ~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~-----~~~~~~~g~~~~~~~~~---~~~~-~~~I~v~Tp~~l~~~l~~ 168 (417)
T 2i4i_A 98 RKQYPISLVLAPTRELAVQIYEEARKFSYRSR-----VRPCVVYGGADIGQQIR---DLER-GCHLLVATPGRLVDMMER 168 (417)
T ss_dssp CSBCCSEEEECSSHHHHHHHHHHHHHHHTTSS-----CCEEEECSSSCHHHHHH---HHTT-CCSEEEECHHHHHHHHHT
T ss_pred ccCCccEEEECCcHHHHHHHHHHHHHHhCcCC-----ceEEEEECCCCHHHHHH---HhhC-CCCEEEEChHHHHHHHHc
Confidence 25799999999999999999999887666 78999999887655433 2333 48999999998854
Q ss_pred -ccccCCccEEEEeCCccccccchhhhhhhhhccccccccccccCCCCCCCCCCCCCcEEEEcCCCCHHHHHHH--HcCC
Q 045263 633 -KVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALA--LYGD 709 (742)
Q Consensus 633 -~v~~~~l~LVIIDEaHrfG~~qr~~l~~k~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPiprtla~~--l~gd 709 (742)
...+.++++|||||+|++................ .......+++++||||+.+...... ..++
T Consensus 169 ~~~~~~~~~~iViDEah~~~~~~~~~~~~~i~~~~--------------~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~ 234 (417)
T 2i4i_A 169 GKIGLDFCKYLVLDEADRMLDMGFEPQIRRIVEQD--------------TMPPKGVRHTMMFSATFPKEIQMLARDFLDE 234 (417)
T ss_dssp TSBCCTTCCEEEESSHHHHHHTTCHHHHHHHHTSS--------------SCCCBTTBEEEEEESCCCHHHHHHHHHHCSS
T ss_pred CCcChhhCcEEEEEChhHhhccCcHHHHHHHHHhc--------------cCCCcCCcEEEEEEEeCCHHHHHHHHHHcCC
Confidence 3457889999999999974332211111110000 0000124689999999866543332 3344
Q ss_pred CCeeeeccCCCCCCCcEEEEEc
Q 045263 710 MSLTQITDLPPGRIPIKTYIIE 731 (742)
Q Consensus 710 l~~s~I~e~P~gr~~i~t~~~~ 731 (742)
.....+.........+...++.
T Consensus 235 ~~~~~~~~~~~~~~~i~~~~~~ 256 (417)
T 2i4i_A 235 YIFLAVGRVGSTSENITQKVVW 256 (417)
T ss_dssp CEEEEEC----CCSSEEEEEEE
T ss_pred CEEEEeCCCCCCccCceEEEEE
Confidence 3333333333333445544443
No 22
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.83 E-value=1.5e-19 Score=197.78 Aligned_cols=175 Identities=20% Similarity=0.206 Sum_probs=132.9
Q ss_pred HHHHHHhCCCC-CCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHh---cCCeEEEEcccHHHHHHH
Q 045263 501 TKKLLRALPYS-LTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIG---SGYQAAFMVPTELLATQH 576 (742)
Q Consensus 501 ~~~~~~~lpf~-Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~---~g~qvlilaPT~~La~Q~ 576 (742)
..+.+..++|. |+++|+++++.++++ .++++++|||||||++|+++++..+. .+.+++|++||++|+.|+
T Consensus 51 ~~~~l~~~~~~~~~~~Q~~~i~~~~~~------~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~ 124 (414)
T 3eiq_A 51 LLRGIYAYGFEKPSAIQQRAILPCIKG------YDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQI 124 (414)
T ss_dssp HHHHHHHTTCCSCCHHHHHHHHHHHTT------CCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHhHHHhCC------CCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHH
Confidence 34444567885 999999999999874 37899999999999999999998876 467899999999999999
Q ss_pred HHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhh-----ccccCCccEEEEeCCcccc
Q 045263 577 YEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAE-----KVEFSALRLAIVDEQQRFG 651 (742)
Q Consensus 577 ~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~-----~v~~~~l~LVIIDEaHrfG 651 (742)
++.+.++....+ ..+..+.|+....... ..+..+.++|+|+||+.+.+ ...+.++++|||||+|++.
T Consensus 125 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~---~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~ 196 (414)
T 3eiq_A 125 QKVVMALGDYMG-----ASCHACIGGTNVRAEV---QKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEML 196 (414)
T ss_dssp HHHHHHHGGGSC-----CCEEECCCCTTHHHHH---HHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHH
T ss_pred HHHHHHHhcccC-----ceEEEEECCcchHHHH---HHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhh
Confidence 999999887766 6788888887654433 34555778999999998754 3457789999999999974
Q ss_pred ccchhhhhhhhhccccccccccccCCCCCCCCCCCCCcEEEEcCCCCHHHHHHHHc
Q 045263 652 VVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALY 707 (742)
Q Consensus 652 ~~qr~~l~~k~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPiprtla~~l~ 707 (742)
............ ......+++++|||||.+........
T Consensus 197 ~~~~~~~~~~~~------------------~~~~~~~~~i~~SAT~~~~~~~~~~~ 234 (414)
T 3eiq_A 197 SRGFKDQIYDIF------------------QKLNSNTQVVLLSATMPSDVLEVTKK 234 (414)
T ss_dssp HTTTHHHHHHHH------------------TTSCTTCEEEEECSCCCHHHHHHHTT
T ss_pred ccCcHHHHHHHH------------------HhCCCCCeEEEEEEecCHHHHHHHHH
Confidence 333221111110 11224578999999998777666543
No 23
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.82 E-value=5e-20 Score=208.79 Aligned_cols=151 Identities=17% Similarity=0.135 Sum_probs=122.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcCC-eEEEEcccHHHHHHHHHHHHHhhhhc
Q 045263 509 PYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGY-QAAFMVPTELLATQHYEHLLKLLDNM 587 (742)
Q Consensus 509 pf~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~-qvlilaPT~~La~Q~~~~l~~~l~~~ 587 (742)
+++|+++|.+|++.++++ +++++++|||+|||++|+.++...+..+. +++|++||++|+.|+++++.++....
T Consensus 111 ~~~l~~~Q~~ai~~~~~~------~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~ 184 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVN------RRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFS 184 (510)
T ss_dssp EECCCHHHHHHHHHHHHH------SEEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSC
T ss_pred CCCCCHHHHHHHHHHHhc------CCcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCC
Confidence 448999999999999986 47899999999999999999998887765 99999999999999999998874333
Q ss_pred cCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhhc--cccCCccEEEEeCCccccccchhhhhhhhhcc
Q 045263 588 EEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEK--VEFSALRLAIVDEQQRFGVVQRGRFNSKLYYT 665 (742)
Q Consensus 588 ~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~~--v~~~~l~LVIIDEaHrfG~~qr~~l~~k~~~~ 665 (742)
+ ..+..++|+.+..++ ..+..+|+|+|++.+... ..+.++++|||||+|+++..+...+...
T Consensus 185 ~-----~~v~~~~~~~~~~~~-------~~~~~~I~i~T~~~l~~~~~~~~~~~~liIiDE~H~~~~~~~~~il~~---- 248 (510)
T 2oca_A 185 H-----AMIKKIGGGASKDDK-------YKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATGKSISSIISG---- 248 (510)
T ss_dssp G-----GGEEECGGGCCTTGG-------GCTTCSEEEEEHHHHTTSCGGGGGGEEEEEEETGGGCCHHHHHHHGGG----
T ss_pred c-----cceEEEecCCccccc-------cccCCcEEEEeHHHHhhchhhhhhcCCEEEEECCcCCCcccHHHHHHh----
Confidence 3 578888888766543 246689999999998654 5678999999999999987554443322
Q ss_pred ccccccccccCCCCCCCCCCCCCcEEEEcCCCCH
Q 045263 666 SMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIP 699 (742)
Q Consensus 666 ~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPip 699 (742)
+...+++|+|||||..
T Consensus 249 ------------------~~~~~~~l~lSATp~~ 264 (510)
T 2oca_A 249 ------------------LNNCMFKFGLSGSLRD 264 (510)
T ss_dssp ------------------CTTCCEEEEEESCGGG
T ss_pred ------------------cccCcEEEEEEeCCCC
Confidence 1235789999999943
No 24
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.82 E-value=4.1e-19 Score=193.90 Aligned_cols=174 Identities=20% Similarity=0.187 Sum_probs=131.7
Q ss_pred hHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHh---cCCeEEEEcccHHHH
Q 045263 498 SSLTKKLLRALPYS-LTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIG---SGYQAAFMVPTELLA 573 (742)
Q Consensus 498 ~~l~~~~~~~lpf~-Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~---~g~qvlilaPT~~La 573 (742)
..+.+. +...+|. |+++|+++++.++++ .++++++|||||||.+|+++++..+. .+.+++|++||++|+
T Consensus 30 ~~l~~~-l~~~g~~~~~~~Q~~~i~~i~~~------~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~ 102 (400)
T 1s2m_A 30 RELLMG-IFEAGFEKPSPIQEEAIPVAITG------RDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELA 102 (400)
T ss_dssp HHHHHH-HHHTTCCSCCHHHHHHHHHHHHT------CCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHH
T ss_pred HHHHHH-HHHCCCCCCCHHHHHHHHHHhcC------CCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHH
Confidence 344444 4557887 999999999999975 27899999999999999999998765 356899999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhh-----ccccCCccEEEEeCCc
Q 045263 574 TQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAE-----KVEFSALRLAIVDEQQ 648 (742)
Q Consensus 574 ~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~-----~v~~~~l~LVIIDEaH 648 (742)
.|+++.+.+++...+ +++..++|+........ . ..+.++|+|+||+.+.+ ...+.++++|||||+|
T Consensus 103 ~q~~~~~~~~~~~~~-----~~~~~~~g~~~~~~~~~---~-~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH 173 (400)
T 1s2m_A 103 LQTSQVVRTLGKHCG-----ISCMVTTGGTNLRDDIL---R-LNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEAD 173 (400)
T ss_dssp HHHHHHHHHHTTTTT-----CCEEEECSSSCHHHHHH---H-TTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHH
T ss_pred HHHHHHHHHHhcccC-----ceEEEEeCCcchHHHHH---H-hcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCch
Confidence 999999999987766 78899999887654432 1 23568999999998743 3457889999999999
Q ss_pred cccccchhhhhhhhhccccccccccccCCCCCCCCCCCCCcEEEEcCCCCHHHHHHH
Q 045263 649 RFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALA 705 (742)
Q Consensus 649 rfG~~qr~~l~~k~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPiprtla~~ 705 (742)
++............. .......++++||||+.+......
T Consensus 174 ~~~~~~~~~~~~~i~------------------~~~~~~~~~i~lSAT~~~~~~~~~ 212 (400)
T 1s2m_A 174 KMLSRDFKTIIEQIL------------------SFLPPTHQSLLFSATFPLTVKEFM 212 (400)
T ss_dssp HHSSHHHHHHHHHHH------------------TTSCSSCEEEEEESCCCHHHHHHH
T ss_pred HhhhhchHHHHHHHH------------------HhCCcCceEEEEEecCCHHHHHHH
Confidence 986544333222211 111235689999999866554443
No 25
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.82 E-value=2.5e-19 Score=194.42 Aligned_cols=172 Identities=22% Similarity=0.228 Sum_probs=130.6
Q ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhc---CCeEEEEcccHHHH
Q 045263 498 SSLTKKLLRALPY-SLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGS---GYQAAFMVPTELLA 573 (742)
Q Consensus 498 ~~l~~~~~~~lpf-~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~---g~qvlilaPT~~La 573 (742)
+.+.+.+ ..++| +|+++|+++++.++++ .++++++|||+|||++|+++++..+.. +.+++|++||++|+
T Consensus 30 ~~l~~~l-~~~g~~~~~~~Q~~~i~~i~~~------~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~ 102 (394)
T 1fuu_A 30 ENLLRGV-FGYGFEEPSAIQQRAIMPIIEG------HDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELA 102 (394)
T ss_dssp HHHHHHH-HHHTCCSCCHHHHHHHHHHHHT------CCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHH
T ss_pred HHHHHHH-HHcCCCCCCHHHHHHHHHHhCC------CCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHH
Confidence 4454444 55677 5999999999999985 378999999999999999999887653 57999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhh-----ccccCCccEEEEeCCc
Q 045263 574 TQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAE-----KVEFSALRLAIVDEQQ 648 (742)
Q Consensus 574 ~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~-----~v~~~~l~LVIIDEaH 648 (742)
.|+++.+.+++...+ +++..++|+....+....+. ..+|+|+||+.+.+ ...+.++++||+||+|
T Consensus 103 ~q~~~~~~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~-----~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah 172 (394)
T 1fuu_A 103 LQIQKVVMALAFHMD-----IKVHACIGGTSFVEDAEGLR-----DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEAD 172 (394)
T ss_dssp HHHHHHHHHHTTTSC-----CCEEEECSSCCHHHHHHHHH-----HCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHH
T ss_pred HHHHHHHHHHhccCC-----eeEEEEeCCCchHHHHhhcC-----CCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChH
Confidence 999999999987766 78999999988766554433 37999999998854 3346789999999999
Q ss_pred cccccch-hhhhhhhhccccccccccccCCCCCCCCCCCCCcEEEEcCCCCHHHHHHH
Q 045263 649 RFGVVQR-GRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALA 705 (742)
Q Consensus 649 rfG~~qr-~~l~~k~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPiprtla~~ 705 (742)
++..... ..+.... . .....+++++|||||.+......
T Consensus 173 ~~~~~~~~~~~~~~~-~------------------~~~~~~~~i~~SAT~~~~~~~~~ 211 (394)
T 1fuu_A 173 EMLSSGFKEQIYQIF-T------------------LLPPTTQVVLLSATMPNDVLEVT 211 (394)
T ss_dssp HHHHTTCHHHHHHHH-H------------------HSCTTCEEEEECSSCCHHHHHHH
T ss_pred HhhCCCcHHHHHHHH-H------------------hCCCCceEEEEEEecCHHHHHHH
Confidence 9643222 2221110 0 01235689999999987655444
No 26
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.82 E-value=1.8e-19 Score=197.51 Aligned_cols=173 Identities=24% Similarity=0.259 Sum_probs=130.9
Q ss_pred HHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHh---cCCeEEEEcccHHHHH
Q 045263 499 SLTKKLLRALPYS-LTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIG---SGYQAAFMVPTELLAT 574 (742)
Q Consensus 499 ~l~~~~~~~lpf~-Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~---~g~qvlilaPT~~La~ 574 (742)
.+.+. +..++|. |+++|+++++.++++ .++++++|||||||++|+++++..+. .+.+++|++||++|+.
T Consensus 47 ~l~~~-l~~~g~~~~~~~Q~~ai~~i~~~------~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~ 119 (410)
T 2j0s_A 47 DLLRG-IYAYGFEKPSAIQQRAIKQIIKG------RDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAV 119 (410)
T ss_dssp HHHHH-HHHHTCCSCCHHHHHHHHHHHTT------CCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHH
T ss_pred HHHHH-HHHcCCCCCCHHHHHHHHHHhCC------CCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHH
Confidence 34444 4567887 999999999999874 37899999999999999999998765 4689999999999999
Q ss_pred HHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhh-----ccccCCccEEEEeCCcc
Q 045263 575 QHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAE-----KVEFSALRLAIVDEQQR 649 (742)
Q Consensus 575 Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~-----~v~~~~l~LVIIDEaHr 649 (742)
|+++.+.++....+ +.+..++|+....+.... +..+ .+|+|+||+.+.+ ...+.++++|||||+|+
T Consensus 120 q~~~~~~~~~~~~~-----~~~~~~~g~~~~~~~~~~---~~~~-~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~ 190 (410)
T 2j0s_A 120 QIQKGLLALGDYMN-----VQCHACIGGTNVGEDIRK---LDYG-QHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADE 190 (410)
T ss_dssp HHHHHHHHHTTTTT-----CCEEEECTTSCHHHHHHH---HHHC-CSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHH
T ss_pred HHHHHHHHHhccCC-----eEEEEEECCCCHHHHHHH---hhcC-CCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHH
Confidence 99999999887666 788999998877655433 2333 7999999998754 34567899999999999
Q ss_pred ccccchhhhhhhhhccccccccccccCCCCCCCCCCCCCcEEEEcCCCCHHHHHHH
Q 045263 650 FGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALA 705 (742)
Q Consensus 650 fG~~qr~~l~~k~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPiprtla~~ 705 (742)
+............. .......++++|||||.+......
T Consensus 191 ~~~~~~~~~~~~i~------------------~~~~~~~~~i~~SAT~~~~~~~~~ 228 (410)
T 2j0s_A 191 MLNKGFKEQIYDVY------------------RYLPPATQVVLISATLPHEILEMT 228 (410)
T ss_dssp HTSTTTHHHHHHHH------------------TTSCTTCEEEEEESCCCHHHHTTG
T ss_pred HHhhhhHHHHHHHH------------------HhCccCceEEEEEcCCCHHHHHHH
Confidence 75433221111110 112235689999999877655443
No 27
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.81 E-value=4e-19 Score=188.43 Aligned_cols=165 Identities=19% Similarity=0.262 Sum_probs=124.7
Q ss_pred HHHHhCCCC-CCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHH
Q 045263 503 KLLRALPYS-LTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLL 581 (742)
Q Consensus 503 ~~~~~lpf~-Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT~~La~Q~~~~l~ 581 (742)
..++.++|. |+++|+++++.+.++ .++++++|||+|||++|+.+++.. +.++++++||++|+.|+++.+.
T Consensus 7 ~~l~~~g~~~l~~~Q~~~i~~i~~~------~~~lv~~~TGsGKT~~~~~~~~~~---~~~~liv~P~~~L~~q~~~~~~ 77 (337)
T 2z0m_A 7 QAIREMGFKNFTEVQSKTIPLMLQG------KNVVVRAKTGSGKTAAYAIPILEL---GMKSLVVTPTRELTRQVASHIR 77 (337)
T ss_dssp HHHHHTTCCSCCHHHHHHHHHHHTT------CCEEEECCTTSSHHHHHHHHHHHH---TCCEEEECSSHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCHHHHHHHHHHhcC------CCEEEEcCCCCcHHHHHHHHHHhh---cCCEEEEeCCHHHHHHHHHHHH
Confidence 444568886 999999999998864 378999999999999999988753 8899999999999999999999
Q ss_pred HhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhh-----ccccCCccEEEEeCCccccccch-
Q 045263 582 KLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAE-----KVEFSALRLAIVDEQQRFGVVQR- 655 (742)
Q Consensus 582 ~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~-----~v~~~~l~LVIIDEaHrfG~~qr- 655 (742)
++....+ .++..++|+.........+ . ..+|+|+||+.+.+ ...+.++++||+||+|++.....
T Consensus 78 ~~~~~~~-----~~~~~~~~~~~~~~~~~~~---~--~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~~~~ 147 (337)
T 2z0m_A 78 DIGRYMD-----TKVAEVYGGMPYKAQINRV---R--NADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFEMGFI 147 (337)
T ss_dssp HHTTTSC-----CCEEEECTTSCHHHHHHHH---T--TCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHHTTCH
T ss_pred HHhhhcC-----CcEEEEECCcchHHHHhhc---C--CCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhccccH
Confidence 9887666 7899999988766544322 2 37999999998854 33567889999999998743222
Q ss_pred hhhhhhhhccccccccccccCCCCCCCCCCCCCcEEEEcCCCCHHHHHHH
Q 045263 656 GRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALA 705 (742)
Q Consensus 656 ~~l~~k~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPiprtla~~ 705 (742)
..+.... ......+++++|||||.+......
T Consensus 148 ~~~~~~~-------------------~~~~~~~~~~~~SAT~~~~~~~~~ 178 (337)
T 2z0m_A 148 DDIKIIL-------------------AQTSNRKITGLFSATIPEEIRKVV 178 (337)
T ss_dssp HHHHHHH-------------------HHCTTCSEEEEEESCCCHHHHHHH
T ss_pred HHHHHHH-------------------hhCCcccEEEEEeCcCCHHHHHHH
Confidence 1111110 011234678889999877654444
No 28
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.81 E-value=7.7e-19 Score=188.18 Aligned_cols=173 Identities=24% Similarity=0.300 Sum_probs=129.9
Q ss_pred hHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhc--CCeEEEEcccHHHHH
Q 045263 498 SSLTKKLLRALPY-SLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGS--GYQAAFMVPTELLAT 574 (742)
Q Consensus 498 ~~l~~~~~~~lpf-~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~--g~qvlilaPT~~La~ 574 (742)
+.+.+. ++..+| .|+++|+++++.++++ ..++++++|||||||.+++.+++..+.. +.++++++||++|+.
T Consensus 15 ~~~~~~-l~~~g~~~~~~~Q~~~i~~~~~~-----~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~ 88 (367)
T 1hv8_A 15 DNILNA-IRNKGFEKPTDIQMKVIPLFLND-----EYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAI 88 (367)
T ss_dssp HHHHHH-HHHHTCCSCCHHHHHHHHHHHHT-----CSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHH
T ss_pred HHHHHH-HHHcCCCCCCHHHHHHHHHHhCC-----CCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHH
Confidence 344444 455677 5999999999999874 1378999999999999999999887754 679999999999999
Q ss_pred HHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhh-----ccccCCccEEEEeCCcc
Q 045263 575 QHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAE-----KVEFSALRLAIVDEQQR 649 (742)
Q Consensus 575 Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~-----~v~~~~l~LVIIDEaHr 649 (742)
|+++.+.+++...+ +.+..++|+.........+. ..+|+|+||+.+.+ ...+.++++||+||+|+
T Consensus 89 q~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~~~~~-----~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~ 158 (367)
T 1hv8_A 89 QVADEIESLKGNKN-----LKIAKIYGGKAIYPQIKALK-----NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADE 158 (367)
T ss_dssp HHHHHHHHHHCSSC-----CCEEEECTTSCHHHHHHHHH-----TCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHH
T ss_pred HHHHHHHHHhCCCC-----ceEEEEECCcchHHHHhhcC-----CCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchH
Confidence 99999999987655 78888999887655443322 37999999998854 24578899999999999
Q ss_pred ccccch-hhhhhhhhccccccccccccCCCCCCCCCCCCCcEEEEcCCCCHHHHHHH
Q 045263 650 FGVVQR-GRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALA 705 (742)
Q Consensus 650 fG~~qr-~~l~~k~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPiprtla~~ 705 (742)
+..... ..+.... ......+++++|||||.+......
T Consensus 159 ~~~~~~~~~~~~~~-------------------~~~~~~~~~i~~SAT~~~~~~~~~ 196 (367)
T 1hv8_A 159 MLNMGFIKDVEKIL-------------------NACNKDKRILLFSATMPREILNLA 196 (367)
T ss_dssp HHTTTTHHHHHHHH-------------------HTSCSSCEEEEECSSCCHHHHHHH
T ss_pred hhhhchHHHHHHHH-------------------HhCCCCceEEEEeeccCHHHHHHH
Confidence 743222 1111110 011235689999999988765544
No 29
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.81 E-value=2.7e-19 Score=194.28 Aligned_cols=172 Identities=22% Similarity=0.247 Sum_probs=129.7
Q ss_pred HHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhc---CCeEEEEcccHHHHH
Q 045263 499 SLTKKLLRALPYS-LTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGS---GYQAAFMVPTELLAT 574 (742)
Q Consensus 499 ~l~~~~~~~lpf~-Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~---g~qvlilaPT~~La~ 574 (742)
.+.+. +..++|. |+++|+++++.++++ .++++++|||+|||++|+.+++..+.. +.+++|++||++|++
T Consensus 18 ~l~~~-l~~~g~~~~~~~Q~~~i~~~~~~------~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~ 90 (391)
T 1xti_A 18 ELLRA-IVDCGFEHPSEVQHECIPQAILG------MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAF 90 (391)
T ss_dssp HHHHH-HHHHSCCSCCHHHHHHHHHHTTT------CCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHH
T ss_pred HHHHH-HHHCCCCCCCHHHHHHHHHHhcC------CcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHH
Confidence 34444 4557887 999999999998874 378999999999999999999987653 568999999999999
Q ss_pred HHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhh-----ccccCCccEEEEeCCcc
Q 045263 575 QHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAE-----KVEFSALRLAIVDEQQR 649 (742)
Q Consensus 575 Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~-----~v~~~~l~LVIIDEaHr 649 (742)
|+++.+.++....+ .+++..++|+......... +.++.++|+|+||+.+.. ...+.++++|||||+|+
T Consensus 91 q~~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~---~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~ 163 (391)
T 1xti_A 91 QISKEYERFSKYMP----NVKVAVFFGGLSIKKDEEV---LKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDK 163 (391)
T ss_dssp HHHHHHHHHTTTCT----TCCEEEECTTSCHHHHHHH---HHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHH
T ss_pred HHHHHHHHHHhhCC----CeEEEEEeCCCCHHHHHHH---HhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHH
Confidence 99999999876542 2789999999887655443 445678999999998853 34578999999999999
Q ss_pred ccc--cchhhhhhhhhccccccccccccCCCCCCCCCCCCCcEEEEcCCCCHHHHH
Q 045263 650 FGV--VQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLA 703 (742)
Q Consensus 650 fG~--~qr~~l~~k~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPiprtla 703 (742)
+.. ..+..+.... ......+++++|||||.+....
T Consensus 164 ~~~~~~~~~~~~~~~-------------------~~~~~~~~~i~~SAT~~~~~~~ 200 (391)
T 1xti_A 164 MLEQLDMRRDVQEIF-------------------RMTPHEKQVMMFSATLSKEIRP 200 (391)
T ss_dssp HTSSHHHHHHHHHHH-------------------HTSCSSSEEEEEESSCCSTHHH
T ss_pred HhhccchHHHHHHHH-------------------hhCCCCceEEEEEeeCCHHHHH
Confidence 743 1122222111 0112356899999998765433
No 30
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.81 E-value=5.7e-19 Score=191.12 Aligned_cols=198 Identities=17% Similarity=0.184 Sum_probs=137.6
Q ss_pred hHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHh---cCCeEEEEcccHHHH
Q 045263 498 SSLTKKLLRALPYS-LTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIG---SGYQAAFMVPTELLA 573 (742)
Q Consensus 498 ~~l~~~~~~~lpf~-Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~---~g~qvlilaPT~~La 573 (742)
..+.+.+. .++|. |+++|.++++.++.+ .+.++++++|||||||++|+++++..+. .+.+++|++||++|+
T Consensus 14 ~~l~~~l~-~~~~~~~~~~Q~~~i~~~~~~----~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~ 88 (395)
T 3pey_A 14 PELLKGIY-AMKFQKPSKIQERALPLLLHN----PPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELA 88 (395)
T ss_dssp HHHHHHHH-HTTCCSCCHHHHHHHHHHHCS----SCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHH
T ss_pred HHHHHHHH-HCCCCCCCHHHHHHHHHHHcC----CCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHH
Confidence 44555554 46665 999999999999874 2248999999999999999999998765 367999999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhh-----ccccCCccEEEEeCCc
Q 045263 574 TQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAE-----KVEFSALRLAIVDEQQ 648 (742)
Q Consensus 574 ~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~-----~v~~~~l~LVIIDEaH 648 (742)
.|+++.+.++....+ +.+..++|+..... ....++|+|+||+.+.+ ...+.++++|||||+|
T Consensus 89 ~q~~~~~~~~~~~~~-----~~~~~~~~~~~~~~--------~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah 155 (395)
T 3pey_A 89 RQTLEVVQEMGKFTK-----ITSQLIVPDSFEKN--------KQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEAD 155 (395)
T ss_dssp HHHHHHHHHHTTTSC-----CCEEEESTTSSCTT--------SCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHH
T ss_pred HHHHHHHHHHhcccC-----eeEEEEecCchhhh--------ccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChh
Confidence 999999999876655 67888877754322 12358999999998854 3457889999999999
Q ss_pred cccccch--hhhhhhhhccccccccccccCCCCCCCCCCCCCcEEEEcCCCCHHH--HHHHHcCCCCeeeeccCCCCCCC
Q 045263 649 RFGVVQR--GRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRT--LALALYGDMSLTQITDLPPGRIP 724 (742)
Q Consensus 649 rfG~~qr--~~l~~k~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPiprt--la~~l~gdl~~s~I~e~P~gr~~ 724 (742)
++..... ..+.... ......+++++|||||.+.. +.....++.....+...+.....
T Consensus 156 ~~~~~~~~~~~~~~~~-------------------~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (395)
T 3pey_A 156 NMLDQQGLGDQCIRVK-------------------RFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDA 216 (395)
T ss_dssp HHHHSTTHHHHHHHHH-------------------HTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTT
T ss_pred hhcCccccHHHHHHHH-------------------HhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEcccccccccc
Confidence 8754221 1111110 01123578999999987643 33334444444444433334444
Q ss_pred cEEEEEcC
Q 045263 725 IKTYIIEG 732 (742)
Q Consensus 725 i~t~~~~~ 732 (742)
+...+...
T Consensus 217 ~~~~~~~~ 224 (395)
T 3pey_A 217 IKQLYMDC 224 (395)
T ss_dssp EEEEEEEC
T ss_pred ccEEEEEc
Confidence 55555443
No 31
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.80 E-value=2.6e-19 Score=202.88 Aligned_cols=163 Identities=18% Similarity=0.233 Sum_probs=123.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhc-----CCeEEEEcccHHHHHHHHHHHHHh
Q 045263 509 PYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGS-----GYQAAFMVPTELLATQHYEHLLKL 583 (742)
Q Consensus 509 pf~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~-----g~qvlilaPT~~La~Q~~~~l~~~ 583 (742)
||+|+++|.++++.++.+ .++++++|||||||++|+++++..+.. +.+++|++||++|+.|+++.+.++
T Consensus 2 ~~~~~~~Q~~~i~~~~~~------~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~ 75 (555)
T 3tbk_A 2 PLKPRNYQLELALPAKKG------KNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRY 75 (555)
T ss_dssp CCCCCHHHHHHHHHHHTT------CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHhCC------CCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 689999999999999864 378999999999999999999998876 789999999999999999999999
Q ss_pred hhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhhc-----c-ccCCccEEEEeCCccccccc-hh
Q 045263 584 LDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEK-----V-EFSALRLAIVDEQQRFGVVQ-RG 656 (742)
Q Consensus 584 l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~~-----v-~~~~l~LVIIDEaHrfG~~q-r~ 656 (742)
+...+ +++..++|+.+...+...+ .. .++|+|+||+.+.+. + .+.++++|||||+|++.... ..
T Consensus 76 ~~~~~-----~~~~~~~g~~~~~~~~~~~---~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~ 146 (555)
T 3tbk_A 76 FERLG-----YNIASISGATSDSVSVQHI---IE-DNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYN 146 (555)
T ss_dssp HHTTT-----CCEEEECTTTGGGSCHHHH---HH-HCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHH
T ss_pred hccCC-----cEEEEEcCCCcchhhHHHH---hc-CCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHH
Confidence 98766 8899999998765443222 12 379999999998552 2 57788999999999985432 12
Q ss_pred hhhhhhhccccccccccccCCCCCCCCCCCCCcEEEEcCCCCH
Q 045263 657 RFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIP 699 (742)
Q Consensus 657 ~l~~k~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPip 699 (742)
.+........ ........+++|+|||||..
T Consensus 147 ~~~~~~~~~~-------------~~~~~~~~~~~l~lSAT~~~ 176 (555)
T 3tbk_A 147 QIMFRYLDHK-------------LGESRDPLPQVVGLTASVGV 176 (555)
T ss_dssp HHHHHHHHHH-------------TSSCCSCCCEEEEEESCCCC
T ss_pred HHHHHHHHhh-------------hccccCCCCeEEEEecCccc
Confidence 1111110000 00111245789999999954
No 32
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.80 E-value=2.1e-19 Score=221.59 Aligned_cols=185 Identities=22% Similarity=0.241 Sum_probs=138.0
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHH
Q 045263 503 KLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLK 582 (742)
Q Consensus 503 ~~~~~lpf~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT~~La~Q~~~~l~~ 582 (742)
.+...+||+|+++|++||+.+..+ ++++++||||||||++|.++++..+..|.+++|++||++|++|+++.+.+
T Consensus 176 ~~~~~~~f~ltp~Q~~AI~~i~~g------~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~ 249 (1108)
T 3l9o_A 176 NEARTYPFTLDPFQDTAISCIDRG------ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLA 249 (1108)
T ss_dssp SCSSCCSSCCCHHHHHHHHHHTTT------CCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCHHHHHHHHHHHcC------CCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHH
Confidence 445678999999999999998654 48999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhh-----ccccCCccEEEEeCCccccccchhh
Q 045263 583 LLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAE-----KVEFSALRLAIVDEQQRFGVVQRGR 657 (742)
Q Consensus 583 ~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~-----~v~~~~l~LVIIDEaHrfG~~qr~~ 657 (742)
++. .+++++|+.+. ++.++|+|+||+.+.+ ...+.++++|||||+|+++..++..
T Consensus 250 ~~~---------~VglltGd~~~-----------~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~~rg~ 309 (1108)
T 3l9o_A 250 EFG---------DVGLMTGDITI-----------NPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGV 309 (1108)
T ss_dssp HTS---------SEEEECSSCBC-----------CCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSHHHHH
T ss_pred HhC---------CccEEeCcccc-----------CCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccccchHH
Confidence 874 47789998763 3568999999998754 2347789999999999998776655
Q ss_pred hhhhhhccccccccccccCCCCCCCCCCCCCcEEEEcCC-CCHHHHHHHHcCCC-CeeeeccCCCCCCCcEEEEEc
Q 045263 658 FNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSAT-PIPRTLALALYGDM-SLTQITDLPPGRIPIKTYIIE 731 (742)
Q Consensus 658 l~~k~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSAT-Piprtla~~l~gdl-~~s~I~e~P~gr~~i~t~~~~ 731 (742)
.+..... .+...+++|+|||| |....++.++.... +...+...+....|+..+++.
T Consensus 310 ~~e~ii~------------------~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~ 367 (1108)
T 3l9o_A 310 VWEETII------------------LLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFP 367 (1108)
T ss_dssp HHHHHHH------------------HSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEE
T ss_pred HHHHHHH------------------hcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEee
Confidence 4443211 12246789999999 34445555543211 111222223333556666554
No 33
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.80 E-value=3.1e-19 Score=202.72 Aligned_cols=130 Identities=18% Similarity=0.187 Sum_probs=103.9
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhc-----CCeEEEEcccHHHHHHHHHHHHH
Q 045263 508 LPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGS-----GYQAAFMVPTELLATQHYEHLLK 582 (742)
Q Consensus 508 lpf~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~-----g~qvlilaPT~~La~Q~~~~l~~ 582 (742)
.+|+||++|.++++.++.+ .++++++|||||||++|+++++..+.. +.+++|++||++|+.|+++.+.+
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~------~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 77 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAING------KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKH 77 (556)
T ss_dssp ----CCHHHHHHHHHHHTT------CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHcC------CCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 3578999999999999864 378999999999999999999998876 78999999999999999999999
Q ss_pred hhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhh-----cc-ccCCccEEEEeCCccccc
Q 045263 583 LLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAE-----KV-EFSALRLAIVDEQQRFGV 652 (742)
Q Consensus 583 ~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~-----~v-~~~~l~LVIIDEaHrfG~ 652 (742)
++...+ +++..++|+.+...+...+ .. .++|+|+||+.+.+ .+ .+.++++|||||+|++..
T Consensus 78 ~~~~~~-----~~~~~~~g~~~~~~~~~~~---~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~ 144 (556)
T 4a2p_A 78 HFERQG-----YSVQGISGENFSNVSVEKV---IE-DSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTG 144 (556)
T ss_dssp HHGGGT-----CCEEECCCC-----CHHHH---HH-HCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCST
T ss_pred HhcccC-----ceEEEEeCCCCcchhHHHh---hC-CCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCC
Confidence 998776 8899999998665443222 22 27999999999864 23 678899999999999853
No 34
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.80 E-value=4.7e-19 Score=216.64 Aligned_cols=180 Identities=21% Similarity=0.247 Sum_probs=137.6
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhh
Q 045263 505 LRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLL 584 (742)
Q Consensus 505 ~~~lpf~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT~~La~Q~~~~l~~~l 584 (742)
...+||+|+++|.+|++.+..+ .++++++|||||||++|.++++..+..|.+++|++||++|++|+++++.+++
T Consensus 80 ~~~~~f~L~~~Q~eai~~l~~g------~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~ 153 (1010)
T 2xgj_A 80 ARTYPFTLDPFQDTAISCIDRG------ESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEF 153 (1010)
T ss_dssp SCCCSSCCCHHHHHHHHHHHHT------CEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCHHHHHHHHHHHcC------CCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHh
Confidence 3568999999999999999875 3799999999999999999999999999999999999999999999999987
Q ss_pred hhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhh-----ccccCCccEEEEeCCccccccchhhhh
Q 045263 585 DNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAE-----KVEFSALRLAIVDEQQRFGVVQRGRFN 659 (742)
Q Consensus 585 ~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~-----~v~~~~l~LVIIDEaHrfG~~qr~~l~ 659 (742)
. .+++++|+.+.. .+++|+|+||+.+.. ...+.++++|||||+|+++..+|...+
T Consensus 154 ~---------~vglltGd~~~~-----------~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~~ 213 (1010)
T 2xgj_A 154 G---------DVGLMTGDITIN-----------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVVW 213 (1010)
T ss_dssp S---------CEEEECSSCEEC-----------TTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHHH
T ss_pred C---------CEEEEeCCCccC-----------CCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHHH
Confidence 4 477899987642 347999999997743 345789999999999999877776554
Q ss_pred hhhhccccccccccccCCCCCCCCCCCCCcEEEEcCCC-CHHHHHHHHc---C-CCCeeeeccCCCCCCCcEEEEEc
Q 045263 660 SKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATP-IPRTLALALY---G-DMSLTQITDLPPGRIPIKTYIIE 731 (742)
Q Consensus 660 ~k~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATP-iprtla~~l~---g-dl~~s~I~e~P~gr~~i~t~~~~ 731 (742)
+.... .+...+++|+||||+ .+..++.++. + ...+..... ...|+..+++.
T Consensus 214 e~il~------------------~l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~---rp~pl~~~~~~ 269 (1010)
T 2xgj_A 214 EETII------------------LLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNF---RPTPLQHYLFP 269 (1010)
T ss_dssp HHHHH------------------HSCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECC---CSSCEEEEEEE
T ss_pred HHHHH------------------hcCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCC---CcccceEEEEe
Confidence 43211 112357899999994 5555666543 2 233333322 33566666654
No 35
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.79 E-value=1e-18 Score=190.82 Aligned_cols=200 Identities=19% Similarity=0.179 Sum_probs=137.6
Q ss_pred HHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcC---CeEEEEcccHHHHH
Q 045263 499 SLTKKLLRALPYS-LTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSG---YQAAFMVPTELLAT 574 (742)
Q Consensus 499 ~l~~~~~~~lpf~-Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g---~qvlilaPT~~La~ 574 (742)
.+.+. +..++|. |+++|.++++.++.+ .+.++++++|||||||++|+++++..+..+ .+++|++||++|+.
T Consensus 35 ~l~~~-l~~~g~~~~~~~Q~~~i~~~~~~----~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~ 109 (412)
T 3fht_A 35 QLLQG-VYAMGFNRPSKIQENALPLMLAE----PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELAL 109 (412)
T ss_dssp HHHHH-HHHTTCCSCCHHHHHHHHHHHSS----SCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHH
T ss_pred HHHHH-HHHcCCCCCCHHHHHHHHHHhcC----CCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHH
Confidence 34444 4557775 999999999999874 224899999999999999999999887643 48999999999999
Q ss_pred HHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhh------ccccCCccEEEEeCCc
Q 045263 575 QHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAE------KVEFSALRLAIVDEQQ 648 (742)
Q Consensus 575 Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~------~v~~~~l~LVIIDEaH 648 (742)
|+++.+.++..... ...+....|+...... .....+|+|+||+.+.+ .+.+.++++|||||+|
T Consensus 110 q~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-------~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah 178 (412)
T 3fht_A 110 QTGKVIEQMGKFYP----ELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEAD 178 (412)
T ss_dssp HHHHHHHHHTTTST----TCCEEEECTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHH
T ss_pred HHHHHHHHHHhhcc----cceEEEeecCcchhhh-------hcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHH
Confidence 99999999876542 2677777777654321 23457999999998854 3456789999999999
Q ss_pred cccccch-hhhhhhhhccccccccccccCCCCCCCCCCCCCcEEEEcCCCCHHHHHHHH--cCCCCeeeeccCCCCCCCc
Q 045263 649 RFGVVQR-GRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALAL--YGDMSLTQITDLPPGRIPI 725 (742)
Q Consensus 649 rfG~~qr-~~l~~k~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPiprtla~~l--~gdl~~s~I~e~P~gr~~i 725 (742)
++..... ........ ......+++++|||||.+....... ..+.....+.........+
T Consensus 179 ~~~~~~~~~~~~~~~~------------------~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (412)
T 3fht_A 179 VMIATQGHQDQSIRIQ------------------RMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTI 240 (412)
T ss_dssp HHHSTTTTHHHHHHHH------------------HTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTE
T ss_pred HHhhcCCcHHHHHHHH------------------hhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCc
Confidence 8743211 11111100 0112357899999999887554443 3444444444444444455
Q ss_pred EEEEEcC
Q 045263 726 KTYIIEG 732 (742)
Q Consensus 726 ~t~~~~~ 732 (742)
...++..
T Consensus 241 ~~~~~~~ 247 (412)
T 3fht_A 241 KQYYVLC 247 (412)
T ss_dssp EEEEEEC
T ss_pred eEEEEEc
Confidence 5555443
No 36
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.79 E-value=4.8e-19 Score=186.14 Aligned_cols=149 Identities=17% Similarity=0.136 Sum_probs=114.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcCC-eEEEEcccHHHHHHHHHHHHHhhhhcc
Q 045263 510 YSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGY-QAAFMVPTELLATQHYEHLLKLLDNME 588 (742)
Q Consensus 510 f~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~-qvlilaPT~~La~Q~~~~l~~~l~~~~ 588 (742)
++|+++|.++++.++++ .+.++++|||+|||.+++.++...+..+. +++|++||++|++|+++++.++....+
T Consensus 112 ~~l~~~Q~~ai~~~l~~------~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~ 185 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVN------RRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSH 185 (282)
T ss_dssp CCCCHHHHHHHHHHHHH------SEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCG
T ss_pred cCccHHHHHHHHHHHhc------CCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhccccc
Confidence 58999999999999885 25699999999999999998888776664 999999999999999999999865433
Q ss_pred CCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhhc--cccCCccEEEEeCCccccccchhhhhhhhhccc
Q 045263 589 EDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEK--VEFSALRLAIVDEQQRFGVVQRGRFNSKLYYTS 666 (742)
Q Consensus 589 ~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~~--v~~~~l~LVIIDEaHrfG~~qr~~l~~k~~~~~ 666 (742)
..+..+.|+..... ...+..+|+|+|++.+... ..+.++++||+||||++...+...+...
T Consensus 186 -----~~~~~~~~~~~~~~-------~~~~~~~I~v~T~~~l~~~~~~~~~~~~~vIiDEaH~~~~~~~~~il~~----- 248 (282)
T 1rif_A 186 -----AMIKKIGGGASKDD-------KYKNDAPVVVGTWQTVVKQPKEWFSQFGMMMNDECHLATGKSISSIISG----- 248 (282)
T ss_dssp -----GGEEECSTTCSSTT-------CCCTTCSEEEECHHHHTTSCGGGGGGEEEEEEETGGGCCHHHHHHHTTT-----
T ss_pred -----ceEEEEeCCCcchh-------hhccCCcEEEEchHHHHhhHHHHHhhCCEEEEECCccCCcccHHHHHHH-----
Confidence 46777777654322 1124579999999988653 3467899999999999975433322221
Q ss_pred cccccccccCCCCCCCCCCCCCcEEEEcCCCC
Q 045263 667 MSSGMAMVNSDGSPKDDQHMAPHVLAMSATPI 698 (742)
Q Consensus 667 ~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPi 698 (742)
....+++|+|||||.
T Consensus 249 -----------------~~~~~~~l~lSATp~ 263 (282)
T 1rif_A 249 -----------------LNNCMFKFGLSGSLR 263 (282)
T ss_dssp -----------------CTTCCEEEEECSSCC
T ss_pred -----------------hhcCCeEEEEeCCCC
Confidence 113578999999985
No 37
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.79 E-value=8.2e-19 Score=201.20 Aligned_cols=178 Identities=20% Similarity=0.199 Sum_probs=126.1
Q ss_pred HHhCCCC-CCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcCC-------eEEEEcccHHHHHHH
Q 045263 505 LRALPYS-LTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGY-------QAAFMVPTELLATQH 576 (742)
Q Consensus 505 ~~~lpf~-Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~-------qvlilaPT~~La~Q~ 576 (742)
+..++|. |||+|.++|+.++.+ ...++++++|||||||++|++|++..+..+. +++|++||++|+.|+
T Consensus 87 l~~~g~~~~~~~Q~~~i~~~l~~----~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~ 162 (563)
T 3i5x_A 87 ITRMEFPGLTPVQQKTIKPILSS----EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQI 162 (563)
T ss_dssp HHTTCCSSCCHHHHHHHHHHHSS----SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHH
T ss_pred HHHCCCCCCCHHHHHHHHHHhcC----CCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHH
Confidence 4667887 999999999999842 1248899999999999999999999887643 899999999999999
Q ss_pred HHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhh------ccccCCccEEEEeCCccc
Q 045263 577 YEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAE------KVEFSALRLAIVDEQQRF 650 (742)
Q Consensus 577 ~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~------~v~~~~l~LVIIDEaHrf 650 (742)
++.+.+++.... ......+..+.|+...... +..+..+.++|+|+||+.+.+ ...+.++++|||||+|++
T Consensus 163 ~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l 238 (563)
T 3i5x_A 163 EAEVKKIHDMNY-GLKKYACVSLVGGTDFRAA---MNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRL 238 (563)
T ss_dssp HHHHHHHHHHCG-GGTTSCEEEECTTSCHHHH---HHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHH
T ss_pred HHHHHHHHhhcc-ccCceeEEEEECCcCHHHH---HHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHH
Confidence 999999764311 0111457777887765433 233445568999999998854 235788999999999997
Q ss_pred cccch----hhhhhhhhccccccccccccCCCCCCCCCCCCCcEEEEcCCCCHHHHHHH
Q 045263 651 GVVQR----GRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALA 705 (742)
Q Consensus 651 G~~qr----~~l~~k~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPiprtla~~ 705 (742)
....+ ..+....... .......+++++||||+.+.....+
T Consensus 239 ~~~~f~~~~~~i~~~l~~~---------------~~~~~~~~~~l~~SAT~~~~v~~~~ 282 (563)
T 3i5x_A 239 LEIGFRDDLETISGILNEK---------------NSKSADNIKTLLFSATLDDKVQKLA 282 (563)
T ss_dssp TSTTTHHHHHHHHHHHHHH---------------CSSCTTCCEEEEEESSCCTHHHHHT
T ss_pred hccchHHHHHHHHHhhhhc---------------cccCccCceEEEEEccCCHHHHHHH
Confidence 53322 1121111000 0111235689999999876544433
No 38
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.79 E-value=4.5e-19 Score=199.52 Aligned_cols=174 Identities=20% Similarity=0.179 Sum_probs=126.7
Q ss_pred hHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcCC---eEEEEcccHHHH
Q 045263 498 SSLTKKLLRALPYS-LTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGY---QAAFMVPTELLA 573 (742)
Q Consensus 498 ~~l~~~~~~~lpf~-Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~---qvlilaPT~~La 573 (742)
..+.+.+ ..++|. ||++|.+|++.++.+ .+.+++++||||||||++|+++++..+..+. +++|++||++|+
T Consensus 101 ~~l~~~l-~~~g~~~p~~~Q~~ai~~il~~----~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La 175 (479)
T 3fmp_B 101 PQLLQGV-YAMGFNRPSKIQENALPLMLAE----PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELA 175 (479)
T ss_dssp HHHHHHH-HHTTCCSCCHHHHHHHHHHTSB----SCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHH
T ss_pred HHHHHHH-HHcCCCCCCHHHHHHHHHHHcC----CCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHH
Confidence 3444444 457886 999999999999874 2348999999999999999999998876543 899999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhh------ccccCCccEEEEeCC
Q 045263 574 TQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAE------KVEFSALRLAIVDEQ 647 (742)
Q Consensus 574 ~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~------~v~~~~l~LVIIDEa 647 (742)
.|+++.+.++..... .+.+....|+...... .....+|+||||+.+.+ .+.+.++++|||||+
T Consensus 176 ~Q~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-------~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEa 244 (479)
T 3fmp_B 176 LQTGKVIEQMGKFYP----ELKLAYAVRGNKLERG-------QKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEA 244 (479)
T ss_dssp HHHHHHHHHHHTTST----TCCEEEESTTCCCCTT-------CCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCH
T ss_pred HHHHHHHHHHHhhCC----CceEEEEeCCcccccc-------ccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECH
Confidence 999999998875432 1567777776543211 12347899999999854 456689999999999
Q ss_pred ccccccchh--hhhhhhhccccccccccccCCCCCCCCCCCCCcEEEEcCCCCHHHHHHHH
Q 045263 648 QRFGVVQRG--RFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALAL 706 (742)
Q Consensus 648 HrfG~~qr~--~l~~k~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPiprtla~~l 706 (742)
|++...+.. .+.... ......+++++|||||.+.....+.
T Consensus 245 h~~~~~~~~~~~~~~i~-------------------~~~~~~~~~i~~SAT~~~~~~~~~~ 286 (479)
T 3fmp_B 245 DVMIATQGHQDQSIRIQ-------------------RMLPRNCQMLLFSATFEDSVWKFAQ 286 (479)
T ss_dssp HHHHTSTTHHHHHHHHH-------------------TTSCTTSEEEEEESCCCHHHHHHHH
T ss_pred HHHhhcCCcHHHHHHHH-------------------hhCCccceEEEEeCCCCHHHHHHHH
Confidence 987542221 111100 1122357899999999887665554
No 39
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.78 E-value=1.4e-18 Score=200.74 Aligned_cols=181 Identities=20% Similarity=0.216 Sum_probs=128.0
Q ss_pred HHHHHhCCCC-CCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcC-------CeEEEEcccHHHH
Q 045263 502 KKLLRALPYS-LTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSG-------YQAAFMVPTELLA 573 (742)
Q Consensus 502 ~~~~~~lpf~-Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g-------~qvlilaPT~~La 573 (742)
...+..++|. |||+|.++|+.++.+ ...++++++|||||||++|++|++..+..+ .+++|++||++|+
T Consensus 33 ~~~l~~~g~~~~~~~Q~~~i~~il~~----~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La 108 (579)
T 3sqw_A 33 HKAITRMEFPGLTPVQQKTIKPILSS----EDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLA 108 (579)
T ss_dssp HHHHHTTTCSSCCHHHHHHHHHHHCS----SSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHH
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHcc----CCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHH
Confidence 4445678997 999999999999842 124889999999999999999999888664 4899999999999
Q ss_pred HHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhh------ccccCCccEEEEeCC
Q 045263 574 TQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAE------KVEFSALRLAIVDEQ 647 (742)
Q Consensus 574 ~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~------~v~~~~l~LVIIDEa 647 (742)
.|+++.+.+++.... ......+..+.|+...... +..+..+.++|+|+||+.+.+ ...+.++++||||||
T Consensus 109 ~Q~~~~~~~~~~~~~-~~~~~~~~~~~gg~~~~~~---~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEa 184 (579)
T 3sqw_A 109 LQIEAEVKKIHDMNY-GLKKYACVSLVGGTDFRAA---MNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEA 184 (579)
T ss_dssp HHHHHHHHHHHHHCG-GGTTSCEEEECTTSCHHHH---HHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETH
T ss_pred HHHHHHHHHHHhhcc-cccceEEEEEECCccHHHH---HHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEECh
Confidence 999999999864311 0112567777777665433 234445568999999998854 335788999999999
Q ss_pred ccccccc-h---hhhhhhhhccccccccccccCCCCCCCCCCCCCcEEEEcCCCCHHHHHHH
Q 045263 648 QRFGVVQ-R---GRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALA 705 (742)
Q Consensus 648 HrfG~~q-r---~~l~~k~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPiprtla~~ 705 (742)
|++.... + ..+....... +......+++++||||+.+.....+
T Consensus 185 h~l~~~gf~~~~~~i~~~l~~~---------------~~~~~~~~~~l~~SAT~~~~v~~~~ 231 (579)
T 3sqw_A 185 DRLLEIGFRDDLETISGILNEK---------------NSKSADNIKTLLFSATLDDKVQKLA 231 (579)
T ss_dssp HHHTSTTTHHHHHHHHHHHHHH---------------CSSCTTCCEEEEEESSCCTHHHHHT
T ss_pred HHhhcCCCHHHHHHHHHHhhhh---------------hcccccCceEEEEeccCChHHHHHH
Confidence 9874322 1 1221111000 0111235689999999877554443
No 40
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.78 E-value=4.1e-19 Score=217.02 Aligned_cols=191 Identities=19% Similarity=0.240 Sum_probs=143.4
Q ss_pred CchHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcccHHHHHH
Q 045263 496 GWSSLTKKLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQ 575 (742)
Q Consensus 496 ~~~~l~~~~~~~lpf~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT~~La~Q 575 (742)
.+.++.+.+...+||+|+++|.++|+.+.++ .++++++|||||||++|++++......|.+++|++||++|+.|
T Consensus 24 ~f~~l~~~~~~~~~f~l~~~Q~~aI~~il~g------~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q 97 (997)
T 4a4z_A 24 NFDELIPNPARSWPFELDTFQKEAVYHLEQG------DSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQ 97 (997)
T ss_dssp THHHHCSSCSCCCSSCCCHHHHHHHHHHHTT------CEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHH
T ss_pred chhhhhHhHHHhCCCCCCHHHHHHHHHHHcC------CCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHH
Confidence 4455556667789999999999999999874 3789999999999999999999988889999999999999999
Q ss_pred HHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhh-----ccccCCccEEEEeCCccc
Q 045263 576 HYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAE-----KVEFSALRLAIVDEQQRF 650 (742)
Q Consensus 576 ~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~-----~v~~~~l~LVIIDEaHrf 650 (742)
+++++.+++. + +++.+++|+.+. +++++|+|+||+.+.. ...+.++++|||||+|++
T Consensus 98 ~~~~l~~~~~--~-----~~v~~l~G~~~~-----------~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l 159 (997)
T 4a4z_A 98 KFRDFKETFD--D-----VNIGLITGDVQI-----------NPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYV 159 (997)
T ss_dssp HHHHHHTTC---------CCEEEECSSCEE-----------CTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCC
T ss_pred HHHHHHHHcC--C-----CeEEEEeCCCcc-----------CCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccc
Confidence 9999998764 2 678999998753 3568999999998854 335778999999999997
Q ss_pred cccchhhhhhhhhccccccccccccCCCCCCCCCCCCCcEEEEcCCC-CHHHHHHHHc----CCCCeeeeccCCCCCCCc
Q 045263 651 GVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATP-IPRTLALALY----GDMSLTQITDLPPGRIPI 725 (742)
Q Consensus 651 G~~qr~~l~~k~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATP-iprtla~~l~----gdl~~s~I~e~P~gr~~i 725 (742)
....+...++.... .+...+++|+||||| .+..++.++. +...+.. .+..+.|+
T Consensus 160 ~d~~~g~~~e~ii~------------------~l~~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~---~~~r~~pl 218 (997)
T 4a4z_A 160 NDQDRGVVWEEVII------------------MLPQHVKFILLSATVPNTYEFANWIGRTKQKNIYVIS---TPKRPVPL 218 (997)
T ss_dssp CTTCTTCCHHHHHH------------------HSCTTCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEE---CSSCSSCE
T ss_pred cccchHHHHHHHHH------------------hcccCCCEEEEcCCCCChHHHHHHHhcccCCceEEEe---cCCCCccc
Confidence 65544332222110 122357899999995 6777777664 3332222 23344667
Q ss_pred EEEEEc
Q 045263 726 KTYIIE 731 (742)
Q Consensus 726 ~t~~~~ 731 (742)
..++..
T Consensus 219 ~~~v~~ 224 (997)
T 4a4z_A 219 EINIWA 224 (997)
T ss_dssp EEEEEE
T ss_pred eEEEec
Confidence 666544
No 41
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.77 E-value=8.8e-19 Score=174.71 Aligned_cols=130 Identities=21% Similarity=0.224 Sum_probs=96.4
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhc------CCeEEEEcccHHHHHH-HHHH
Q 045263 507 ALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGS------GYQAAFMVPTELLATQ-HYEH 579 (742)
Q Consensus 507 ~lpf~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~------g~qvlilaPT~~La~Q-~~~~ 579 (742)
...++|+++|.++++.++++ .+.++++|||+|||.+++.++...+.. +.+++|++||++|+.| +.+.
T Consensus 29 ~~~~~l~~~Q~~~i~~~~~~------~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~ 102 (216)
T 3b6e_A 29 EPELQLRPYQMEVAQPALEG------KNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKE 102 (216)
T ss_dssp SCCCCCCHHHHHHHHHHHTT------CCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHT
T ss_pred cCCCCchHHHHHHHHHHhcC------CCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHH
Confidence 34578999999999999863 378999999999999999999877654 6799999999999999 6677
Q ss_pred HHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhhc-----------cccCCccEEEEeCCc
Q 045263 580 LLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEK-----------VEFSALRLAIVDEQQ 648 (742)
Q Consensus 580 l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~~-----------v~~~~l~LVIIDEaH 648 (742)
+.++... + +++..++|+.....+.... .. ..+|+|+||+.+... ..+.++++|||||+|
T Consensus 103 ~~~~~~~-~-----~~v~~~~g~~~~~~~~~~~---~~-~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah 172 (216)
T 3b6e_A 103 FQPFLKK-W-----YRVIGLSGDTQLKISFPEV---VK-SCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECH 172 (216)
T ss_dssp HHHHHTT-T-----SCEEECCC---CCCCHHHH---HH-HCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-
T ss_pred HHHHhcc-C-----ceEEEEeCCcccchhHHhh---cc-CCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECch
Confidence 7777643 3 6788888876543332211 11 379999999988541 456789999999999
Q ss_pred cccc
Q 045263 649 RFGV 652 (742)
Q Consensus 649 rfG~ 652 (742)
+++.
T Consensus 173 ~~~~ 176 (216)
T 3b6e_A 173 HTNK 176 (216)
T ss_dssp ----
T ss_pred hhcc
Confidence 9853
No 42
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.77 E-value=4.4e-18 Score=187.60 Aligned_cols=153 Identities=21% Similarity=0.228 Sum_probs=120.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHh-cCCeEEEEcccHHHHHHHHHHHHHhhhhcc
Q 045263 510 YSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIG-SGYQAAFMVPTELLATQHYEHLLKLLDNME 588 (742)
Q Consensus 510 f~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~-~g~qvlilaPT~~La~Q~~~~l~~~l~~~~ 588 (742)
|+|+++|.++++.+..+ +.++.+|||+|||++++.++...+. .+.+++|++||++|+.|+++++.+++....
T Consensus 8 ~~l~~~Q~~~i~~~~~~-------~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~ 80 (494)
T 1wp9_A 8 IQPRIYQEVIYAKCKET-------NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPP 80 (494)
T ss_dssp HCCCHHHHHHHHHGGGS-------CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCG
T ss_pred CCccHHHHHHHHHHhhC-------CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcch
Confidence 58999999999998873 6899999999999999999888765 578999999999999999999999874322
Q ss_pred CCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhh-----ccccCCccEEEEeCCccccccc-hhhhhhhh
Q 045263 589 EDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAE-----KVEFSALRLAIVDEQQRFGVVQ-RGRFNSKL 662 (742)
Q Consensus 589 ~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~-----~v~~~~l~LVIIDEaHrfG~~q-r~~l~~k~ 662 (742)
.++..++|+....++...+.. .+|+|+|++.+.. .+.+.++++|||||+|++.... ...+....
T Consensus 81 -----~~v~~~~g~~~~~~~~~~~~~-----~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~ 150 (494)
T 1wp9_A 81 -----EKIVALTGEKSPEERSKAWAR-----AKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREY 150 (494)
T ss_dssp -----GGEEEECSCSCHHHHHHHHHH-----CSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHH
T ss_pred -----hheEEeeCCcchhhhhhhccC-----CCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCCCcHHHHHHHH
Confidence 478999999988776665543 7999999998854 4457889999999999985322 22222211
Q ss_pred hccccccccccccCCCCCCCCCCCCCcEEEEcCCCC
Q 045263 663 YYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPI 698 (742)
Q Consensus 663 ~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPi 698 (742)
. .....+++++|||||.
T Consensus 151 -~------------------~~~~~~~~l~lTaTp~ 167 (494)
T 1wp9_A 151 -K------------------RQAKNPLVIGLTASPG 167 (494)
T ss_dssp -H------------------HHCSSCCEEEEESCSC
T ss_pred -H------------------hcCCCCeEEEEecCCC
Confidence 0 0113578999999997
No 43
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.77 E-value=9.5e-18 Score=191.96 Aligned_cols=199 Identities=16% Similarity=0.098 Sum_probs=144.3
Q ss_pred hHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcccHHHHHHH
Q 045263 498 SSLTKKLLRALPYS-LTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQH 576 (742)
Q Consensus 498 ~~l~~~~~~~lpf~-Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT~~La~Q~ 576 (742)
..+.+.+.+.++|. |+++|.++++.++++ .++++.+|||+|||++|++|++. .+..++|++|+++|+.|+
T Consensus 11 ~~~~~~l~~~~g~~~~r~~Q~~~i~~il~g------~d~lv~apTGsGKTl~~~lp~l~---~~g~~lvi~P~~aL~~q~ 81 (523)
T 1oyw_A 11 SGAKQVLQETFGYQQFRPGQEEIIDTVLSG------RDCLVVMPTGGGKSLCYQIPALL---LNGLTVVVSPLISLMKDQ 81 (523)
T ss_dssp HHHHHHHHHTTCCSSCCTTHHHHHHHHHTT------CCEEEECSCHHHHHHHHHHHHHH---SSSEEEEECSCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHcC------CCEEEECCCCcHHHHHHHHHHHH---hCCCEEEECChHHHHHHH
Confidence 34556666779996 999999999999974 37899999999999999999873 356899999999999999
Q ss_pred HHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhh-----ccccCCccEEEEeCCcccc
Q 045263 577 YEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAE-----KVEFSALRLAIVDEQQRFG 651 (742)
Q Consensus 577 ~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~-----~v~~~~l~LVIIDEaHrfG 651 (742)
++.+.++ + +.+..++|+.+..++...+..+..|..+|+++||+.+.. .+...++++|||||+|+++
T Consensus 82 ~~~l~~~----g-----i~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~ 152 (523)
T 1oyw_A 82 VDQLQAN----G-----VAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCIS 152 (523)
T ss_dssp HHHHHHT----T-----CCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGC
T ss_pred HHHHHHc----C-----CcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccC
Confidence 9998874 4 688899999998888888888889999999999998842 3445789999999999974
Q ss_pred c---cchhhhhhhhhccccccccccccCCCCCCCCCCCCCcEEEEcCCCCHHHHHHHH--cCCCCeeeeccCCCCCCCcE
Q 045263 652 V---VQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALAL--YGDMSLTQITDLPPGRIPIK 726 (742)
Q Consensus 652 ~---~qr~~l~~k~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPiprtla~~l--~gdl~~s~I~e~P~gr~~i~ 726 (742)
. ..+..+..-... +... ...++++|||||.+.....+. .+.-+...+ .....|..+.
T Consensus 153 ~~g~~fr~~~~~l~~l----------------~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~-~~~~~r~~l~ 214 (523)
T 1oyw_A 153 QWGHDFRPEYAALGQL----------------RQRF-PTLPFMALTATADDTTRQDIVRLLGLNDPLIQ-ISSFDRPNIR 214 (523)
T ss_dssp TTSSCCCHHHHGGGGH----------------HHHC-TTSCEEEEESCCCHHHHHHHHHHHTCCSCEEE-ECCCCCTTEE
T ss_pred cCCCccHHHHHHHHHH----------------HHhC-CCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEE-eCCCCCCceE
Confidence 2 222222110000 0011 235689999999998765443 232222222 2234565666
Q ss_pred EEEEcC
Q 045263 727 TYIIEG 732 (742)
Q Consensus 727 t~~~~~ 732 (742)
..+...
T Consensus 215 ~~v~~~ 220 (523)
T 1oyw_A 215 YMLMEK 220 (523)
T ss_dssp EEEEEC
T ss_pred EEEEeC
Confidence 555543
No 44
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.76 E-value=1.8e-17 Score=192.41 Aligned_cols=198 Identities=17% Similarity=0.139 Sum_probs=142.3
Q ss_pred hHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcccHHHHHHH
Q 045263 498 SSLTKKLLRALPYS-LTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQH 576 (742)
Q Consensus 498 ~~l~~~~~~~lpf~-Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT~~La~Q~ 576 (742)
..+.+.+.+.++|. |+|+|+++|+.++++ .++++.+|||+|||++|++|++. .+.+++|++|+++|+.|+
T Consensus 30 ~~l~~~L~~~fg~~~~rp~Q~~~i~~il~g------~d~lv~~pTGsGKTl~~~lpal~---~~g~~lVisP~~~L~~q~ 100 (591)
T 2v1x_A 30 GKVKDILQNVFKLEKFRPLQLETINVTMAG------KEVFLVMPTGGGKSLCYQLPALC---SDGFTLVICPLISLMEDQ 100 (591)
T ss_dssp HHHHHHHHHTSCCCSCCTTHHHHHHHHHTT------CCEEEECCTTSCTTHHHHHHHHT---SSSEEEEECSCHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHcC------CCEEEEECCCChHHHHHHHHHHH---cCCcEEEEeCHHHHHHHH
Confidence 44566666678996 999999999999874 37899999999999999999874 467899999999999999
Q ss_pred HHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHh--hcCCccEEEechHHHhh----------ccccCCccEEEE
Q 045263 577 YEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDL--QTGDITLVIGTHSLIAE----------KVEFSALRLAIV 644 (742)
Q Consensus 577 ~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l--~~G~~~IVVgT~~~l~~----------~v~~~~l~LVII 644 (742)
++.+.++ + +.+..++|+.+..+...++..+ ..+..+|+|+||+.+.. ...+.++++|||
T Consensus 101 ~~~l~~~----g-----i~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iVi 171 (591)
T 2v1x_A 101 LMVLKQL----G-----ISATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAV 171 (591)
T ss_dssp HHHHHHH----T-----CCEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHhc----C-----CcEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEE
Confidence 9999886 4 7889999999988888877777 46889999999987632 223668999999
Q ss_pred eCCccccc---cchhhhhhhhhccccccccccccCCCCCCCCCCCCCcEEEEcCCCCHHHHHHHH--cCCCCeeeeccCC
Q 045263 645 DEQQRFGV---VQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALAL--YGDMSLTQITDLP 719 (742)
Q Consensus 645 DEaHrfG~---~qr~~l~~k~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPiprtla~~l--~gdl~~s~I~e~P 719 (742)
||||++.. ..+..+..-... +. ....+++++|||||.+.....+. .+.-+...+. ..
T Consensus 172 DEAH~is~~g~dfr~~~~~l~~l----------------~~-~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~-~~ 233 (591)
T 2v1x_A 172 DEVHCCSQWGHDFRPDYKALGIL----------------KR-QFPNASLIGLTATATNHVLTDAQKILCIEKCFTFT-AS 233 (591)
T ss_dssp ETGGGGSTTCTTCCGGGGGGGHH----------------HH-HCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEE-CC
T ss_pred ECcccccccccccHHHHHHHHHH----------------HH-hCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEe-cC
Confidence 99999632 122222110000 00 11246799999999988766553 2332222222 23
Q ss_pred CCCCCcEEEEEc
Q 045263 720 PGRIPIKTYIIE 731 (742)
Q Consensus 720 ~gr~~i~t~~~~ 731 (742)
..|..+...+..
T Consensus 234 ~~r~nl~~~v~~ 245 (591)
T 2v1x_A 234 FNRPNLYYEVRQ 245 (591)
T ss_dssp CCCTTEEEEEEE
T ss_pred CCCcccEEEEEe
Confidence 445555444443
No 45
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.76 E-value=4.5e-18 Score=199.77 Aligned_cols=131 Identities=18% Similarity=0.235 Sum_probs=106.6
Q ss_pred HhCCC-CCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcC-----CeEEEEcccHHHHHHHHHH
Q 045263 506 RALPY-SLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSG-----YQAAFMVPTELLATQHYEH 579 (742)
Q Consensus 506 ~~lpf-~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g-----~qvlilaPT~~La~Q~~~~ 579 (742)
+.++| +|+++|.++++.++.+ .++++++|||||||++|+++++..+..+ .+++|++||++|+.|+++.
T Consensus 7 ~~~g~~~lr~~Q~~~i~~~l~g------~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~ 80 (696)
T 2ykg_A 7 NLYSPFKPRNYQLELALPAMKG------KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSV 80 (696)
T ss_dssp CTTC--CCCHHHHHHHHHHHTT------CCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHH
T ss_pred cccCCCCccHHHHHHHHHHHcC------CCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHH
Confidence 34565 5999999999999864 3889999999999999999999887653 7899999999999999999
Q ss_pred HHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhhc-----c-ccCCccEEEEeCCcccc
Q 045263 580 LLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEK-----V-EFSALRLAIVDEQQRFG 651 (742)
Q Consensus 580 l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~~-----v-~~~~l~LVIIDEaHrfG 651 (742)
+.+++...+ +++..++|+......... +.. ..+|+|+||+.+.+. + .+.++++|||||||+..
T Consensus 81 ~~~~~~~~~-----~~v~~~~g~~~~~~~~~~---~~~-~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~ 149 (696)
T 2ykg_A 81 FSKYFERHG-----YRVTGISGATAENVPVEQ---IVE-NNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTS 149 (696)
T ss_dssp HHHHTTTTT-----CCEEEECSSSCSSSCHHH---HHH-TCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCS
T ss_pred HHHHhccCC-----ceEEEEeCCccccccHHH---hcc-CCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCccc
Confidence 999987655 789999998765333222 222 389999999988552 2 57788999999999974
No 46
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.76 E-value=4.9e-18 Score=203.50 Aligned_cols=161 Identities=16% Similarity=0.184 Sum_probs=118.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhc-----CCeEEEEcccHHHHHHHHHHHHHh
Q 045263 509 PYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGS-----GYQAAFMVPTELLATQHYEHLLKL 583 (742)
Q Consensus 509 pf~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~-----g~qvlilaPT~~La~Q~~~~l~~~ 583 (742)
.+.|+++|.++++.++.+ .++++++|||||||++|+++++..+.. +.+++|++||++|+.|+++.+.++
T Consensus 246 ~~~l~~~Q~~~i~~~l~~------~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~ 319 (797)
T 4a2q_A 246 TKKARSYQIELAQPAING------KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHH 319 (797)
T ss_dssp --CCCHHHHHHHHHHHTT------CCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhC------CCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 356999999999999864 378999999999999999999998876 789999999999999999999999
Q ss_pred hhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhhc-----c-ccCCccEEEEeCCccccccch-h
Q 045263 584 LDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEK-----V-EFSALRLAIVDEQQRFGVVQR-G 656 (742)
Q Consensus 584 l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~~-----v-~~~~l~LVIIDEaHrfG~~qr-~ 656 (742)
+...+ +++..++|+.+...+...+ .. .++|+|+||+.+.+. + .+.++++|||||||+++.... .
T Consensus 320 ~~~~~-----~~v~~~~g~~~~~~~~~~~---~~-~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~ 390 (797)
T 4a2q_A 320 FERQG-----YSVQGISGENFSNVSVEKV---IE-DSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYN 390 (797)
T ss_dssp HGGGT-----CCEEEECCC-----CHHHH---HH-TCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHH
T ss_pred cccCC-----ceEEEEeCCcchhhhHHHh---hC-CCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHH
Confidence 98766 8999999998765543322 22 389999999988652 2 567789999999999864432 2
Q ss_pred hhhhhhhccccccccccccCCCCCCCCCCCCCcEEEEcCCCC
Q 045263 657 RFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPI 698 (742)
Q Consensus 657 ~l~~k~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPi 698 (742)
.+........ .......+++|+|||||.
T Consensus 391 ~i~~~~~~~~--------------~~~~~~~~~~l~lSATp~ 418 (797)
T 4a2q_A 391 VLMTRYLEQK--------------FNSASQLPQILGLTASVG 418 (797)
T ss_dssp HHHHHHHHHH--------------HTTCCCCCEEEEEESCCC
T ss_pred HHHHHHHHHh--------------hccCCCCCeEEEEcCCcc
Confidence 2211111000 000123578999999995
No 47
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.75 E-value=2.2e-18 Score=193.47 Aligned_cols=137 Identities=25% Similarity=0.200 Sum_probs=111.0
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhhhhc
Q 045263 508 LPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNM 587 (742)
Q Consensus 508 lpf~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT~~La~Q~~~~l~~~l~~~ 587 (742)
.+++|+++|++|++.+.++ .+.++++|||+|||++|+.++... +.+++|++||++|+.|+++++.+ +
T Consensus 90 ~~~~l~~~Q~~ai~~i~~~------~~~ll~~~TGsGKT~~~l~~i~~~---~~~~Lvl~P~~~L~~Q~~~~~~~-~--- 156 (472)
T 2fwr_A 90 AEISLRDYQEKALERWLVD------KRGCIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGI-F--- 156 (472)
T ss_dssp CCCCBCHHHHHHHHHHTTT------TEEEEECCTTSCHHHHHHHHHHHH---CSCEEEEESSHHHHHHHHHHGGG-G---
T ss_pred CCCCcCHHHHHHHHHHHhc------CCEEEEeCCCCCHHHHHHHHHHHc---CCCEEEEECCHHHHHHHHHHHHh-C---
Confidence 4678999999999998864 268999999999999999988765 88999999999999999999988 4
Q ss_pred cCCCCCcE-EEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhhccc--cCCccEEEEeCCccccccchhhhhhhhhc
Q 045263 588 EEDKHKPK-IALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVE--FSALRLAIVDEQQRFGVVQRGRFNSKLYY 664 (742)
Q Consensus 588 ~~~~~~i~-V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~~v~--~~~l~LVIIDEaHrfG~~qr~~l~~k~~~ 664 (742)
+ ++ +.+++|+... ..+|+|+|++.+..... ..++++|||||+|++.......+...
T Consensus 157 ~-----~~~v~~~~g~~~~-------------~~~Ivv~T~~~l~~~~~~~~~~~~liIvDEaH~~~~~~~~~~~~~--- 215 (472)
T 2fwr_A 157 G-----EEYVGEFSGRIKE-------------LKPLTVSTYDSAYVNAEKLGNRFMLLIFDEVHHLPAESYVQIAQM--- 215 (472)
T ss_dssp C-----GGGEEEBSSSCBC-------------CCSEEEEEHHHHHHTHHHHTTTCSEEEEETGGGTTSTTTHHHHHT---
T ss_pred C-----CcceEEECCCcCC-------------cCCEEEEEcHHHHHHHHHhcCCCCEEEEECCcCCCChHHHHHHHh---
Confidence 3 56 8999988653 36899999998855331 25699999999999875554433321
Q ss_pred cccccccccccCCCCCCCCCCCCCcEEEEcCCCC
Q 045263 665 TSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPI 698 (742)
Q Consensus 665 ~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPi 698 (742)
...+++|+|||||.
T Consensus 216 --------------------~~~~~~l~lSATp~ 229 (472)
T 2fwr_A 216 --------------------SIAPFRLGLTATFE 229 (472)
T ss_dssp --------------------CCCSEEEEEESCCC
T ss_pred --------------------cCCCeEEEEecCcc
Confidence 13568999999997
No 48
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.75 E-value=4.2e-18 Score=201.39 Aligned_cols=173 Identities=19% Similarity=0.241 Sum_probs=131.5
Q ss_pred HHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHh-cCCeEEEEcccHHHHHHH
Q 045263 499 SLTKKLLRALPY-SLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIG-SGYQAAFMVPTELLATQH 576 (742)
Q Consensus 499 ~l~~~~~~~lpf-~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~-~g~qvlilaPT~~La~Q~ 576 (742)
+......+.++| .|+++|.++++.++.. ..+++++||||||||.++.++++..+. .|.++++++|+++|+.|+
T Consensus 17 ~~~~~~l~~~g~~~l~~~Q~~~i~~~~~~-----~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~ 91 (715)
T 2va8_A 17 SNVIEIIKKRGIKKLNPPQTEAVKKGLLE-----GNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEK 91 (715)
T ss_dssp HHHHHHHHTTSCCBCCHHHHHHHHTTTTT-----TCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHHHhcC-----CCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHH
Confidence 344556677999 5999999999984332 248999999999999999999998776 689999999999999999
Q ss_pred HHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhh-----ccccCCccEEEEeCCcccc
Q 045263 577 YEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAE-----KVEFSALRLAIVDEQQRFG 651 (742)
Q Consensus 577 ~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~-----~v~~~~l~LVIIDEaHrfG 651 (742)
+++++ .+...+ +++..++|+....++. + +..+|+|+||+.+.. ...+.++++|||||+|.++
T Consensus 92 ~~~~~-~~~~~g-----~~v~~~~G~~~~~~~~-----~--~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~ 158 (715)
T 2va8_A 92 YLTFK-DWELIG-----FKVAMTSGDYDTDDAW-----L--KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLN 158 (715)
T ss_dssp HHHHG-GGGGGT-----CCEEECCSCSSSCCGG-----G--GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGG
T ss_pred HHHHH-HhhcCC-----CEEEEEeCCCCCchhh-----c--CCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcC
Confidence 99995 444556 7899999987654431 1 258999999987743 2237899999999999987
Q ss_pred ccchhhhhhhhhccccccccccccCCCCCCCCCCCCCcEEEEcCCCC-HHHHHHHHcC
Q 045263 652 VVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPI-PRTLALALYG 708 (742)
Q Consensus 652 ~~qr~~l~~k~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPi-prtla~~l~g 708 (742)
...+....+..... . ..+++++||||+. ++.++.++..
T Consensus 159 ~~~~~~~l~~i~~~------------------~-~~~~ii~lSATl~n~~~~~~~l~~ 197 (715)
T 2va8_A 159 DPERGPVVESVTIR------------------A-KRRNLLALSATISNYKQIAKWLGA 197 (715)
T ss_dssp CTTTHHHHHHHHHH------------------H-HTSEEEEEESCCTTHHHHHHHHTC
T ss_pred CcccchHHHHHHHh------------------c-ccCcEEEEcCCCCCHHHHHHHhCC
Confidence 55555433321100 0 1468999999965 8888888754
No 49
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.75 E-value=1.7e-18 Score=204.50 Aligned_cols=172 Identities=23% Similarity=0.252 Sum_probs=128.8
Q ss_pred HHHHHhCCC-CCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHH
Q 045263 502 KKLLRALPY-SLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHL 580 (742)
Q Consensus 502 ~~~~~~lpf-~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT~~La~Q~~~~l 580 (742)
..+++.++| +|+++|.++++.+..+ .+++++||||||||.+|.++++..+..|.++++++|+++|+.|+++++
T Consensus 15 ~~~l~~~g~~~l~~~Q~~~i~~i~~~------~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~ 88 (702)
T 2p6r_A 15 VGILKEEGIEELFPPQAEAVEKVFSG------KNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESF 88 (702)
T ss_dssp HHHHHCC---CCCCCCHHHHHHHTTC------SCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHhCC------CcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHHHH
Confidence 445567888 6999999999996652 489999999999999999999998888999999999999999999999
Q ss_pred HHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhh-----ccccCCccEEEEeCCccccccch
Q 045263 581 LKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAE-----KVEFSALRLAIVDEQQRFGVVQR 655 (742)
Q Consensus 581 ~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~-----~v~~~~l~LVIIDEaHrfG~~qr 655 (742)
+ .+...+ +++..++|+....++. .+..+|+|+||+.+.. ...+.++++|||||+|.++...|
T Consensus 89 ~-~~~~~g-----~~v~~~~G~~~~~~~~-------~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r 155 (702)
T 2p6r_A 89 K-KWEKIG-----LRIGISTGDYESRDEH-------LGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKR 155 (702)
T ss_dssp T-TTTTTT-----CCEEEECSSCBCCSSC-------STTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTT
T ss_pred H-HHHhcC-----CEEEEEeCCCCcchhh-------ccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCc
Confidence 5 344445 7899999987654331 2368999999987743 22367899999999999876666
Q ss_pred hhhhhhhhccccccccccccCCCCCCCCCCCCCcEEEEcCCCC-HHHHHHHHc
Q 045263 656 GRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPI-PRTLALALY 707 (742)
Q Consensus 656 ~~l~~k~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPi-prtla~~l~ 707 (742)
....+...... ......+++++||||+. ++.++.++.
T Consensus 156 ~~~~~~ll~~l---------------~~~~~~~~ii~lSATl~n~~~~~~~l~ 193 (702)
T 2p6r_A 156 GATLEILVTKM---------------RRMNKALRVIGLSATAPNVTEIAEWLD 193 (702)
T ss_dssp HHHHHHHHHHH---------------HHHCTTCEEEEEECCCTTHHHHHHHTT
T ss_pred ccHHHHHHHHH---------------HhcCcCceEEEECCCcCCHHHHHHHhC
Confidence 43322210000 00113578999999955 788887764
No 50
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.75 E-value=2e-18 Score=204.54 Aligned_cols=171 Identities=23% Similarity=0.298 Sum_probs=130.0
Q ss_pred HHHHHHHhCCC-CCCHHHHHHHHH-HHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHh-cCCeEEEEcccHHHHHHH
Q 045263 500 LTKKLLRALPY-SLTSSQLSAISE-IIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIG-SGYQAAFMVPTELLATQH 576 (742)
Q Consensus 500 l~~~~~~~lpf-~Lt~~Q~~aI~~-I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~-~g~qvlilaPT~~La~Q~ 576 (742)
....+++.++| .|+++|.++++. +..+ .+++++||||||||.+|.++++..+. .|.++++++|+++|+.|+
T Consensus 11 ~~~~~l~~~g~~~l~~~Q~~~i~~~~~~~------~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~ 84 (720)
T 2zj8_A 11 RIKSTLKERGIESFYPPQAEALKSGILEG------KNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEK 84 (720)
T ss_dssp HHHHHHHHTTCCBCCHHHHHHHTTTGGGT------CEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHhcCC------CcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHH
Confidence 34455667899 599999999998 4442 48999999999999999999988776 689999999999999999
Q ss_pred HHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhh-----ccccCCccEEEEeCCcccc
Q 045263 577 YEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAE-----KVEFSALRLAIVDEQQRFG 651 (742)
Q Consensus 577 ~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~-----~v~~~~l~LVIIDEaHrfG 651 (742)
++++++ +..++ +++..++|+.....+. .+..+|+|+||+.+.. ...+.++++|||||+|+++
T Consensus 85 ~~~~~~-l~~~g-----~~v~~~~G~~~~~~~~-------~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~ 151 (720)
T 2zj8_A 85 FQEFQD-WEKIG-----LRVAMATGDYDSKDEW-------LGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIG 151 (720)
T ss_dssp HHHTGG-GGGGT-----CCEEEECSCSSCCCGG-------GGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGG
T ss_pred HHHHHH-HHhcC-----CEEEEecCCCCccccc-------cCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccC
Confidence 999964 34455 7899999987654431 2358999999997743 2337789999999999987
Q ss_pred ccchhhhhhhhhccccccccccccCCCCCCCCCCCCCcEEEEcCCC-CHHHHHHHHc
Q 045263 652 VVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATP-IPRTLALALY 707 (742)
Q Consensus 652 ~~qr~~l~~k~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATP-iprtla~~l~ 707 (742)
...|....+..... +...+++++||||+ .++.++.++.
T Consensus 152 ~~~r~~~~~~ll~~------------------l~~~~~ii~lSATl~n~~~~~~~l~ 190 (720)
T 2zj8_A 152 SRDRGATLEVILAH------------------MLGKAQIIGLSATIGNPEELAEWLN 190 (720)
T ss_dssp CTTTHHHHHHHHHH------------------HBTTBEEEEEECCCSCHHHHHHHTT
T ss_pred CCcccHHHHHHHHH------------------hhcCCeEEEEcCCcCCHHHHHHHhC
Confidence 76665433321100 00157899999995 5788877753
No 51
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.74 E-value=3.3e-18 Score=194.83 Aligned_cols=188 Identities=19% Similarity=0.149 Sum_probs=121.9
Q ss_pred HhCCCC-CCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcC---CeEEEEcccHHHHHHHHHHHH
Q 045263 506 RALPYS-LTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSG---YQAAFMVPTELLATQHYEHLL 581 (742)
Q Consensus 506 ~~lpf~-Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g---~qvlilaPT~~La~Q~~~~l~ 581 (742)
...+|. |+++|++|++.++++ .+.++++++|||||||++|+++++..+..+ .+++|++||++|+.|+++.+.
T Consensus 135 ~~~g~~~p~~~Q~~ai~~i~~~----~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~ 210 (508)
T 3fho_A 135 XXXXXXXXXKIQEKALPLLLSN----PPRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVT 210 (508)
T ss_dssp ----CEECCCTTSSSHHHHHCS----SCCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHH
T ss_pred ccccccCcHHHHHHHHHHHHcC----CCCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHH
Confidence 344664 999999999999875 124899999999999999999999887654 489999999999999999999
Q ss_pred HhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhh-----ccccCCccEEEEeCCccccccch-
Q 045263 582 KLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAE-----KVEFSALRLAIVDEQQRFGVVQR- 655 (742)
Q Consensus 582 ~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~-----~v~~~~l~LVIIDEaHrfG~~qr- 655 (742)
+++...+ +.+....++..... ....++|+|+|++.+.+ ...+.++++|||||+|+++....
T Consensus 211 ~~~~~~~-----~~~~~~~~~~~~~~--------~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~ 277 (508)
T 3fho_A 211 EMGKYTE-----VKTAFGIKDSVPKG--------AKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGL 277 (508)
T ss_dssp HHSTTSS-----CCEEC------------------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--C
T ss_pred HhCCccC-----eeEEEEeCCccccc--------ccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCc
Confidence 9886554 45554444432211 12358999999998854 34688999999999999754221
Q ss_pred -hhhhhhhhccccccccccccCCCCCCCCCCCCCcEEEEcCCCCHH--HHHHHHcCCCCeeeeccCCCCCCCcEEEE
Q 045263 656 -GRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPR--TLALALYGDMSLTQITDLPPGRIPIKTYI 729 (742)
Q Consensus 656 -~~l~~k~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPipr--tla~~l~gdl~~s~I~e~P~gr~~i~t~~ 729 (742)
..+.... ......+++++|||||.+. .+.....++.....+.........+...+
T Consensus 278 ~~~~~~i~-------------------~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 335 (508)
T 3fho_A 278 GDQSMRIK-------------------HLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLY 335 (508)
T ss_dssp HHHHHHHH-------------------HHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEE
T ss_pred HHHHHHHH-------------------HhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEE
Confidence 1111110 0012356899999998854 44444455554444443333333333333
No 52
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.74 E-value=2.8e-18 Score=201.61 Aligned_cols=128 Identities=22% Similarity=0.252 Sum_probs=101.8
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcC------CeEEEEcccHHHHHHH-HHHH
Q 045263 508 LPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSG------YQAAFMVPTELLATQH-YEHL 580 (742)
Q Consensus 508 lpf~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g------~qvlilaPT~~La~Q~-~~~l 580 (742)
-+|+|+++|.++++.++++ .+.++.+|||+|||++|+++++..+..+ .++||++||++|+.|+ ++++
T Consensus 4 ~~~~l~~~Q~~~i~~il~g------~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l 77 (699)
T 4gl2_A 4 AMLQLRPYQMEVAQPALEG------KNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEF 77 (699)
T ss_dssp ---CCCHHHHHHHHHHHSS------CCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTH
T ss_pred CCCCccHHHHHHHHHHHhC------CCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHH
Confidence 3578999999999999873 3789999999999999999999887654 7899999999999999 9999
Q ss_pred HHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhhc-----------cccCCccEEEEeCCcc
Q 045263 581 LKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEK-----------VEFSALRLAIVDEQQR 649 (742)
Q Consensus 581 ~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~~-----------v~~~~l~LVIIDEaHr 649 (742)
.+++.. + +++..++|+....++...+. +..+|+|+||+.+... +.+.++++|||||||+
T Consensus 78 ~~~~~~-~-----~~v~~~~g~~~~~~~~~~~~----~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~ 147 (699)
T 4gl2_A 78 QPFLKK-W-----YRVIGLSGDTQLKISFPEVV----KSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHH 147 (699)
T ss_dssp HHHHTT-T-----SCEEEEC----CCCCHHHHH----HSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGG
T ss_pred HHHcCc-C-----ceEEEEeCCcchhhHHHhhh----cCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccc
Confidence 998865 2 68999999987654433222 3589999999998653 3567899999999998
Q ss_pred cc
Q 045263 650 FG 651 (742)
Q Consensus 650 fG 651 (742)
..
T Consensus 148 ~~ 149 (699)
T 4gl2_A 148 TN 149 (699)
T ss_dssp CB
T ss_pred cC
Confidence 63
No 53
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.73 E-value=4.3e-18 Score=209.45 Aligned_cols=138 Identities=18% Similarity=0.210 Sum_probs=116.8
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHH-HhcCCeEEEEcccHHHHHHHH
Q 045263 499 SLTKKLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEV-IGSGYQAAFMVPTELLATQHY 577 (742)
Q Consensus 499 ~l~~~~~~~lpf~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~-l~~g~qvlilaPT~~La~Q~~ 577 (742)
.+.+.+.+.++|.| ++|.++++.++++ .+++++||||||||+ +.++++.. ...|.+++|++||++|+.|++
T Consensus 45 ~~~~~~~~~~g~~p-~iQ~~ai~~il~g------~dvlv~apTGSGKTl-~~lp~l~~~~~~~~~~lil~PtreLa~Q~~ 116 (1054)
T 1gku_B 45 EFVEFFRKCVGEPR-AIQKMWAKRILRK------ESFAATAPTGVGKTS-FGLAMSLFLALKGKRCYVIFPTSLLVIQAA 116 (1054)
T ss_dssp HHHHHHHTTTCSCC-HHHHHHHHHHHTT------CCEECCCCBTSCSHH-HHHHHHHHHHTTSCCEEEEESCHHHHHHHH
T ss_pred HHHHHHHHhcCCCH-HHHHHHHHHHHhC------CCEEEEcCCCCCHHH-HHHHHHHHHhhcCCeEEEEeccHHHHHHHH
Confidence 45566778899999 9999999999975 389999999999998 65555544 456889999999999999999
Q ss_pred HHHHHhhhhccCCCCCc----EEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhhccc-cCCccEEEEeCCcccc
Q 045263 578 EHLLKLLDNMEEDKHKP----KIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVE-FSALRLAIVDEQQRFG 651 (742)
Q Consensus 578 ~~l~~~l~~~~~~~~~i----~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~~v~-~~~l~LVIIDEaHrfG 651 (742)
+.+.+++...+ + ++..++|+.+..++...+..+.+ ++|+|+||+.+.+.+. +.++++|||||+|++.
T Consensus 117 ~~l~~l~~~~~-----i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~L~~l~~lViDEah~~l 188 (1054)
T 1gku_B 117 ETIRKYAEKAG-----VGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRELGHFDFIFVDDVDAIL 188 (1054)
T ss_dssp HHHHHHHTTTC-----CSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTTSCCCSEEEESCHHHHH
T ss_pred HHHHHHHhhcC-----CCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHHhccCCEEEEeChhhhh
Confidence 99999987766 6 89999999998877666666666 8999999999977443 7789999999999964
No 54
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.73 E-value=1.2e-17 Score=172.14 Aligned_cols=138 Identities=25% Similarity=0.196 Sum_probs=108.5
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhhhhc
Q 045263 508 LPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNM 587 (742)
Q Consensus 508 lpf~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT~~La~Q~~~~l~~~l~~~ 587 (742)
.+++|+++|++++..++++ .+.++++|||+|||.+++.++... +.++++++||++|+.|+++++.+ +
T Consensus 90 ~~~~l~~~Q~~ai~~~~~~------~~~ll~~~tG~GKT~~a~~~~~~~---~~~~liv~P~~~L~~q~~~~~~~-~--- 156 (237)
T 2fz4_A 90 AEISLRDYQEKALERWLVD------KRGCIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGI-F--- 156 (237)
T ss_dssp CCCCCCHHHHHHHHHHTTT------SEEEEEESSSTTHHHHHHHHHHHS---CSCEEEEESSHHHHHHHHHHHGG-G---
T ss_pred CCCCcCHHHHHHHHHHHhC------CCEEEEeCCCCCHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHh-C---
Confidence 4578999999999988764 258999999999999998887653 78999999999999999999988 3
Q ss_pred cCCCCCcE-EEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhhccc--cCCccEEEEeCCccccccchhhhhhhhhc
Q 045263 588 EEDKHKPK-IALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVE--FSALRLAIVDEQQRFGVVQRGRFNSKLYY 664 (742)
Q Consensus 588 ~~~~~~i~-V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~~v~--~~~l~LVIIDEaHrfG~~qr~~l~~k~~~ 664 (742)
+ +. +..++|+... ..+|+|+|++.+..... ..++++|||||+|++.......+...
T Consensus 157 ~-----~~~v~~~~g~~~~-------------~~~i~v~T~~~l~~~~~~~~~~~~llIiDEaH~l~~~~~~~i~~~--- 215 (237)
T 2fz4_A 157 G-----EEYVGEFSGRIKE-------------LKPLTVSTYDSAYVNAEKLGNRFMLLIFDEVHHLPAESYVQIAQM--- 215 (237)
T ss_dssp C-----GGGEEEESSSCBC-------------CCSEEEEEHHHHHHTHHHHTTTCSEEEEECSSCCCTTTHHHHHHT---
T ss_pred C-----CCeEEEEeCCCCC-------------cCCEEEEeHHHHHhhHHHhcccCCEEEEECCccCCChHHHHHHHh---
Confidence 3 56 8888887642 36899999998854322 25689999999999976554444331
Q ss_pred cccccccccccCCCCCCCCCCCCCcEEEEcCCCCH
Q 045263 665 TSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIP 699 (742)
Q Consensus 665 ~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPip 699 (742)
...+++|+|||||..
T Consensus 216 --------------------~~~~~~l~LSATp~r 230 (237)
T 2fz4_A 216 --------------------SIAPFRLGLTATFER 230 (237)
T ss_dssp --------------------CCCSEEEEEEESCC-
T ss_pred --------------------ccCCEEEEEecCCCC
Confidence 124679999999863
No 55
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.71 E-value=2.3e-17 Score=200.86 Aligned_cols=130 Identities=18% Similarity=0.189 Sum_probs=103.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhc-----CCeEEEEcccHHHHHHHHHHHHHh
Q 045263 509 PYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGS-----GYQAAFMVPTELLATQHYEHLLKL 583 (742)
Q Consensus 509 pf~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~-----g~qvlilaPT~~La~Q~~~~l~~~ 583 (742)
+++|+++|.++++.++.+ .+.++++|||||||++|+++++..+.. +.+++|++||++|+.|+++++.++
T Consensus 246 ~~~~r~~Q~~ai~~il~g------~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~ 319 (936)
T 4a2w_A 246 TKKARSYQIELAQPAING------KNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHH 319 (936)
T ss_dssp --CCCHHHHHHHHHHHTT------CCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcC------CCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHH
Confidence 467999999999999864 378999999999999999999988776 778999999999999999999999
Q ss_pred hhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhhc-----c-ccCCccEEEEeCCcccccc
Q 045263 584 LDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEK-----V-EFSALRLAIVDEQQRFGVV 653 (742)
Q Consensus 584 l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~~-----v-~~~~l~LVIIDEaHrfG~~ 653 (742)
+...+ +++..++|+.+...+...+ .. .++|+|+||+.+.+. + .+.++++|||||||+++..
T Consensus 320 ~~~~~-----~~v~~~~G~~~~~~~~~~~---~~-~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~ 386 (936)
T 4a2w_A 320 FERQG-----YSVQGISGENFSNVSVEKV---IE-DSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGN 386 (936)
T ss_dssp HHTTT-----CCEEEECCC-----CCHHH---HH-HCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTT
T ss_pred hcccC-----ceEEEEECCcchhhHHHHh---cc-CCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCC
Confidence 98766 8899999998655432221 11 379999999998652 2 4667899999999998543
No 56
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.71 E-value=1.6e-17 Score=195.40 Aligned_cols=164 Identities=20% Similarity=0.203 Sum_probs=134.0
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHh
Q 045263 504 LLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKL 583 (742)
Q Consensus 504 ~~~~lpf~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT~~La~Q~~~~l~~~ 583 (742)
-.+.++|.+++.|..++..++++ + +.++.||+|||++|.+|++.....|.+++||+||++||.|+++.+..+
T Consensus 72 s~R~lG~~Pt~VQ~~~ip~LlqG-------~-IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l 143 (997)
T 2ipc_A 72 AKRYLGMRHFDVQLIGGAVLHEG-------K-IAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPV 143 (997)
T ss_dssp HHHHTCCCCCHHHHHHHHHHHTT-------S-EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCcHHHHhhcccccCC-------c-eeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHH
Confidence 34568899999999999998874 1 999999999999999999877778999999999999999999999999
Q ss_pred hhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHh-----hc-------cccC---CccEEEEeCCc
Q 045263 584 LDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIA-----EK-------VEFS---ALRLAIVDEQQ 648 (742)
Q Consensus 584 l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~-----~~-------v~~~---~l~LVIIDEaH 648 (742)
+..++ +++++++|+.+..++...+ .++|+||||+.+. +. +.++ +++++||||+|
T Consensus 144 ~~~lG-----Lsv~~i~Gg~~~~~r~~ay------~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaD 212 (997)
T 2ipc_A 144 YRGLG-----LSVGVIQHASTPAERRKAY------LADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVD 212 (997)
T ss_dssp HHTTT-----CCEEECCTTCCHHHHHHHH------TSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHH
T ss_pred HHhcC-----CeEEEEeCCCCHHHHHHHc------CCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechH
Confidence 99888 9999999999876665432 2899999999983 22 3577 89999999999
Q ss_pred cccccchhhhhhhhhccccccccccccCCCCCCCCCCCCCcEEEEcCCCCHHHHHHHHcCCCCeeeeccCCCCC
Q 045263 649 RFGVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGR 722 (742)
Q Consensus 649 rfG~~qr~~l~~k~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPiprtla~~l~gdl~~s~I~e~P~gr 722 (742)
++. ..+ + ..| |.||+ |+|++ ..+|++++ +.++++|.+.
T Consensus 213 smL-------iDe--------------------a---rtP--LIISg-p~~~~--~~lY~~~~-~~i~~L~~~~ 250 (997)
T 2ipc_A 213 SIL-------IDE--------------------A---RTP--LIISG-PAEKA--TDLYYKMA-EIAKKLERGL 250 (997)
T ss_dssp HHT-------TSS--------------------T---TSC--EEEEE-SCSSC--HHHHHHHH-HHHHHSCCCC
T ss_pred HHH-------HhC--------------------C---CCC--eeeeC-CCccc--hHHHHHHH-HHHHHhhhcc
Confidence 752 111 1 245 66899 89988 45677777 7788887653
No 57
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.70 E-value=2.2e-17 Score=210.61 Aligned_cols=171 Identities=22% Similarity=0.242 Sum_probs=130.2
Q ss_pred CC-CCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhc-----------CCeEEEEcccHHHHHHHH
Q 045263 510 YS-LTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGS-----------GYQAAFMVPTELLATQHY 577 (742)
Q Consensus 510 f~-Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~-----------g~qvlilaPT~~La~Q~~ 577 (742)
|+ ||+.|.++++.++.. + .|+|+++|||||||++|.++++..+.. |.+++|++|+++||+|.+
T Consensus 77 ~~~ln~iQs~~~~~al~~---~--~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~ 151 (1724)
T 4f92_B 77 FKTLNRIQSKLYRAALET---D--ENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMV 151 (1724)
T ss_dssp CSBCCHHHHHTHHHHHTC---C--CCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHcC---C--CcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHH
Confidence 65 999999999998863 2 389999999999999999999998853 578999999999999999
Q ss_pred HHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhh-------ccccCCccEEEEeCCccc
Q 045263 578 EHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAE-------KVEFSALRLAIVDEQQRF 650 (742)
Q Consensus 578 ~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~-------~v~~~~l~LVIIDEaHrf 650 (742)
+.|.+.+..+| ++|..++|+.+...+. ...++|+|+||+.+.. ...++++++|||||+|..
T Consensus 152 ~~l~~~~~~~g-----i~V~~~tGd~~~~~~~-------~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l 219 (1724)
T 4f92_B 152 GSFGKRLATYG-----ITVAELTGDHQLCKEE-------ISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLL 219 (1724)
T ss_dssp HHHHHHHTTTT-----CCEEECCSSCSSCCTT-------GGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGG
T ss_pred HHHHHHHhhCC-----CEEEEEECCCCCCccc-------cCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhc
Confidence 99999998888 8999999998754332 1248999999997622 123678999999999988
Q ss_pred cccchhhhhhhhhccccccccccccCCCCCCCCCCCCCcEEEEcCC-CCHHHHHHHHcCC
Q 045263 651 GVVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSAT-PIPRTLALALYGD 709 (742)
Q Consensus 651 G~~qr~~l~~k~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSAT-Piprtla~~l~gd 709 (742)
+. .|+...+-..... .+.. ......+++++|||| |+++.++.++.++
T Consensus 220 ~d-~RG~~lE~~l~rl--~~~~---------~~~~~~~riI~LSATl~N~~dvA~wL~~~ 267 (1724)
T 4f92_B 220 HD-DRGPVLEALVARA--IRNI---------EMTQEDVRLIGLSATLPNYEDVATFLRVD 267 (1724)
T ss_dssp GS-TTHHHHHHHHHHH--HHHH---------HHHTCCCEEEEEECSCTTHHHHHHHTTCC
T ss_pred CC-ccHHHHHHHHHHH--HHHH---------HhCCCCCcEEEEecccCCHHHHHHHhCCC
Confidence 65 3543332110000 0000 001235689999999 8899999998764
No 58
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.69 E-value=1.6e-16 Score=202.87 Aligned_cols=167 Identities=20% Similarity=0.281 Sum_probs=127.1
Q ss_pred CC-CCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhc--CCeEEEEcccHHHHHHHHHHHHHhhhh
Q 045263 510 YS-LTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGS--GYQAAFMVPTELLATQHYEHLLKLLDN 586 (742)
Q Consensus 510 f~-Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~--g~qvlilaPT~~La~Q~~~~l~~~l~~ 586 (742)
|. ++|.|.+|++.++.. ..|+++++|||||||++|.+|++..+.. +.+++|++||++||+|.++.+.+.+..
T Consensus 924 f~~fnpiQ~q~~~~l~~~-----~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~ 998 (1724)
T 4f92_B 924 FPFFNPIQTQVFNTVYNS-----DDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQD 998 (1724)
T ss_dssp CSBCCHHHHHHHHHHHSC-----CSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHhcC-----CCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhch
Confidence 44 999999999999863 2489999999999999999999998864 578999999999999999999887643
Q ss_pred -ccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhh-------ccccCCccEEEEeCCccccccchhhh
Q 045263 587 -MEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAE-------KVEFSALRLAIVDEQQRFGVVQRGRF 658 (742)
Q Consensus 587 -~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~-------~v~~~~l~LVIIDEaHrfG~~qr~~l 658 (742)
++ ++|..++|+.+.+.+. +. .++|+|+||+.+.. ...+.++++||+||+|.++.. |+..
T Consensus 999 ~~g-----~~V~~ltGd~~~~~~~--~~-----~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d~-rg~~ 1065 (1724)
T 4f92_B 999 RLN-----KKVVLLTGETSTDLKL--LG-----KGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGGE-NGPV 1065 (1724)
T ss_dssp TSC-----CCEEECCSCHHHHHHH--HH-----HCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGST-THHH
T ss_pred hcC-----CEEEEEECCCCcchhh--cC-----CCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCCC-CCcc
Confidence 55 7899999987654332 11 26999999997632 223678999999999998753 4322
Q ss_pred hh----hhhccccccccccccCCCCCCCCCCCCCcEEEEcCC-CCHHHHHHHHcCC
Q 045263 659 NS----KLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSAT-PIPRTLALALYGD 709 (742)
Q Consensus 659 ~~----k~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSAT-Piprtla~~l~gd 709 (742)
.+ +..... ......+++++|||| |.++.++.++...
T Consensus 1066 le~il~rl~~i~---------------~~~~~~~riI~lSATl~N~~dla~WL~~~ 1106 (1724)
T 4f92_B 1066 LEVICSRMRYIS---------------SQIERPIRIVALSSSLSNAKDVAHWLGCS 1106 (1724)
T ss_dssp HHHHHHHHHHHH---------------HTTSSCCEEEEEESCBTTHHHHHHHHTCC
T ss_pred HHHHHHHHHHHH---------------hhcCCCceEEEEeCCCCCHHHHHHHhCCC
Confidence 21 110000 112235789999999 8999999998654
No 59
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.68 E-value=1e-16 Score=179.16 Aligned_cols=141 Identities=24% Similarity=0.334 Sum_probs=100.5
Q ss_pred CceEEEccCCChHHHHHHHHHH-HHHhcCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHH
Q 045263 533 MNRLLQGDVGCGKTVVAFLACM-EVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMI 611 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~ail-~~l~~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i 611 (742)
.+++++||||||||.+|+.+++ ..+..|.+++|++||++|+.|+++.+. + ..+.+++|+...
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~------~-----~~v~~~~~~~~~------ 65 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALR------G-----EPIRYMTPAVQS------ 65 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT------T-----SCEEEC------------
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhC------C-----CeEEEEecCccc------
Confidence 4789999999999999988888 556778999999999999999998775 2 456666665332
Q ss_pred HHHhhcCCccEEEechHHHh----hccccCCccEEEEeCCcccc---ccchhhhhhhhhccccccccccccCCCCCCCCC
Q 045263 612 RKDLQTGDITLVIGTHSLIA----EKVEFSALRLAIVDEQQRFG---VVQRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQ 684 (742)
Q Consensus 612 ~~~l~~G~~~IVVgT~~~l~----~~v~~~~l~LVIIDEaHrfG---~~qr~~l~~k~~~~~~~~~~~~~~~~~~~r~~~ 684 (742)
.......+.+.|++.+. ....+.++++|||||+|+++ ..++..+.... .
T Consensus 66 ---~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~---------------------~ 121 (431)
T 2v6i_A 66 ---ERTGNEIVDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFLDPASVAARGYIETRV---------------------S 121 (431)
T ss_dssp ------CCCSEEEEEHHHHHHHHHHTCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHH---------------------H
T ss_pred ---cCCCCceEEEEchHHHHHHHhcCccccCCCEEEEeCCccCCccHHHHHHHHHHHh---------------------h
Confidence 12222445666766542 24558999999999999996 44555554431 0
Q ss_pred CCCCcEEEEcCCCCHHHHHHHHcCCCCeeeeccCCCCCCCcEEE
Q 045263 685 HMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTY 728 (742)
Q Consensus 685 ~~~p~vL~mSATPiprtla~~l~gdl~~s~I~e~P~gr~~i~t~ 728 (742)
...+++|+|||||++ .+.+++.++.|+.+.
T Consensus 122 ~~~~~~l~~SAT~~~--------------~~~~~~~~~~~i~~~ 151 (431)
T 2v6i_A 122 MGDAGAIFMTATPPG--------------TTEAFPPSNSPIIDE 151 (431)
T ss_dssp TTSCEEEEEESSCTT--------------CCCSSCCCSSCCEEE
T ss_pred CCCCcEEEEeCCCCc--------------chhhhcCCCCceeec
Confidence 135799999999986 356778888888765
No 60
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.65 E-value=1.6e-16 Score=183.75 Aligned_cols=145 Identities=20% Similarity=0.201 Sum_probs=91.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhc---------CCeEEEEcccHHHHHHHH-HH
Q 045263 510 YSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGS---------GYQAAFMVPTELLATQHY-EH 579 (742)
Q Consensus 510 f~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~---------g~qvlilaPT~~La~Q~~-~~ 579 (742)
+.|+++|.+|++.+++.+..+. .+.+++++||||||++++.++...+.. +.++||++||++|+.|++ +.
T Consensus 177 ~~lr~~Q~~ai~~~~~~~~~~~-~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~~~ 255 (590)
T 3h1t_A 177 YSPRYYQQIAINRAVQSVLQGK-KRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKDKT 255 (590)
T ss_dssp --CCHHHHHHHHHHHHHHHTTC-SEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC-----------C
T ss_pred CCchHHHHHHHHHHHHHHhcCC-CceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 4799999999999998765433 467999999999999988888777664 489999999999999999 66
Q ss_pred HHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhh---------ccccCCccEEEEeCCccc
Q 045263 580 LLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAE---------KVEFSALRLAIVDEQQRF 650 (742)
Q Consensus 580 l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~---------~v~~~~l~LVIIDEaHrf 650 (742)
+..+ + ..+..+.++. ..+..+|+|+|++.+.. .+...++++|||||||++
T Consensus 256 ~~~~----~-----~~~~~~~~~~------------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~ 314 (590)
T 3h1t_A 256 FTPF----G-----DARHKIEGGK------------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRG 314 (590)
T ss_dssp CTTT----C-----SSEEECCC--------------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC--
T ss_pred HHhc----c-----hhhhhhhccC------------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccc
Confidence 6543 3 2344444332 23457999999998854 234567899999999998
Q ss_pred cccc---hhhhhhhhhccccccccccccCCCCCCCCCCCCCcEEEEcCCCCH
Q 045263 651 GVVQ---RGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIP 699 (742)
Q Consensus 651 G~~q---r~~l~~k~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPip 699 (742)
.... ...+... + ..+++|+|||||..
T Consensus 315 ~~~~~~~~~~il~~----------------------~-~~~~~l~lTATP~~ 343 (590)
T 3h1t_A 315 SARDNSNWREILEY----------------------F-EPAFQIGMTATPLR 343 (590)
T ss_dssp -------CHHHHHH----------------------S-TTSEEEEEESSCSC
T ss_pred cccchHHHHHHHHh----------------------C-CcceEEEecccccc
Confidence 6542 2222221 1 23579999999984
No 61
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.65 E-value=8.8e-16 Score=157.23 Aligned_cols=163 Identities=13% Similarity=0.083 Sum_probs=112.1
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhc-C----CeEEEEcccHHHHHHHHHHHH
Q 045263 507 ALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGS-G----YQAAFMVPTELLATQHYEHLL 581 (742)
Q Consensus 507 ~lpf~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~-g----~qvlilaPT~~La~Q~~~~l~ 581 (742)
..++.++++|.++++.+..+ .+++++|+||||||..+..+++..... + .++++++||++|+.|+++++.
T Consensus 57 ~~~~p~~~~q~~~i~~i~~g------~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~ 130 (235)
T 3llm_A 57 RELLPVKKFESEILEAISQN------SVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVA 130 (235)
T ss_dssp HHTSGGGGGHHHHHHHHHHC------SEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHH
T ss_pred HhcCChHHHHHHHHHHHhcC------CEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHH
Confidence 34566899999999999874 378999999999998887777765433 3 389999999999999999998
Q ss_pred Hhhhh-ccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhhcc--ccCCccEEEEeCCccccccchhh-
Q 045263 582 KLLDN-MEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKV--EFSALRLAIVDEQQRFGVVQRGR- 657 (742)
Q Consensus 582 ~~l~~-~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~~v--~~~~l~LVIIDEaHrfG~~qr~~- 657 (742)
..+.. .+ ..++.-..... ....+..+|+|+||+.+.+.+ .+.++++|||||+|+++......
T Consensus 131 ~~~~~~~~-----~~~g~~~~~~~---------~~~~~~~~Ivv~Tpg~l~~~l~~~l~~~~~lVlDEah~~~~~~~~~~ 196 (235)
T 3llm_A 131 FERGEEPG-----KSCGYSVRFES---------ILPRPHASIMFCTVGVLLRKLEAGIRGISHVIVDEIHERDINTDFLL 196 (235)
T ss_dssp HTTTCCTT-----SSEEEEETTEE---------ECCCSSSEEEEEEHHHHHHHHHHCCTTCCEEEECCTTSCCHHHHHHH
T ss_pred HHhccccC-----ceEEEeechhh---------ccCCCCCeEEEECHHHHHHHHHhhhcCCcEEEEECCccCCcchHHHH
Confidence 76642 12 23332111110 111245789999999886533 48899999999999965433211
Q ss_pred -hhhhhhccccccccccccCCCCCCCCCCCCCcEEEEcCCCCHHHHHHHHcC
Q 045263 658 -FNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYG 708 (742)
Q Consensus 658 -l~~k~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPiprtla~~l~g 708 (742)
....... .....++++||||+....++....+
T Consensus 197 ~~l~~i~~-------------------~~~~~~~il~SAT~~~~~~~~~~~~ 229 (235)
T 3llm_A 197 VVLRDVVQ-------------------AYPEVRIVLMSATIDTSMFCEYFFN 229 (235)
T ss_dssp HHHHHHHH-------------------HCTTSEEEEEECSSCCHHHHHHTTS
T ss_pred HHHHHHHh-------------------hCCCCeEEEEecCCCHHHHHHHcCC
Confidence 1111100 0124679999999877776665443
No 62
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.59 E-value=4e-15 Score=175.41 Aligned_cols=129 Identities=18% Similarity=0.124 Sum_probs=110.4
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHh
Q 045263 504 LLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKL 583 (742)
Q Consensus 504 ~~~~lpf~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT~~La~Q~~~~l~~~ 583 (742)
-...++..+++.|..++..++++ .+.+++||||||++|++|++.....|.+++||+||++||.|+++.+..+
T Consensus 67 ~~R~lg~~p~~VQ~~~i~~ll~G--------~Iaem~TGsGKTlaf~LP~l~~~l~g~~vlVltPTreLA~Q~~e~~~~l 138 (853)
T 2fsf_A 67 SKRVFGMRHFDVQLLGGMVLNER--------CIAEMRTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAENNRPL 138 (853)
T ss_dssp HHHHHSCCCCHHHHHHHHHHHSS--------EEEECCTTSCHHHHHHHHHHHHHTTSSCCEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCChHHHhhcccccCC--------eeeeecCCchHHHHHHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHH
Confidence 34557889999999999998864 2999999999999999999977778999999999999999999999999
Q ss_pred hhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHh-h----c-------cccCCccEEEEeCCcccc
Q 045263 584 LDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIA-E----K-------VEFSALRLAIVDEQQRFG 651 (742)
Q Consensus 584 l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~-~----~-------v~~~~l~LVIIDEaHrfG 651 (742)
+..++ ++++++.|+.+...+...+ + ++|+||||+++. + . +.+++++++||||||++.
T Consensus 139 ~~~lg-----l~v~~i~GG~~~~~r~~~~-----~-~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mL 207 (853)
T 2fsf_A 139 FEFLG-----LTVGINLPGMPAPAKREAY-----A-ADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSIL 207 (853)
T ss_dssp HHHTT-----CCEEECCTTCCHHHHHHHH-----H-SSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHT
T ss_pred HHhcC-----CeEEEEeCCCCHHHHHHhc-----C-CCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHH
Confidence 99888 8999999999876554322 2 899999999982 2 2 446889999999999874
No 63
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.58 E-value=1.5e-15 Score=185.39 Aligned_cols=156 Identities=22% Similarity=0.229 Sum_probs=114.0
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcCC--eEEEEcccHHHHHHHHHHHHHhhh
Q 045263 508 LPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGY--QAAFMVPTELLATQHYEHLLKLLD 585 (742)
Q Consensus 508 lpf~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~--qvlilaPT~~La~Q~~~~l~~~l~ 585 (742)
..++|+|+|.+++..+.... ++++||+++||+|||++++.++...+..|. ++||++|+ .|+.||.+++.+.+
T Consensus 150 ~~~~LrpyQ~eav~~~l~~~----~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f- 223 (968)
T 3dmq_A 150 QRTSLIPHQLNIAHDVGRRH----APRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRF- 223 (968)
T ss_dssp CSSCCCHHHHHHHHHHHHSS----SCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHS-
T ss_pred CCCCCcHHHHHHHHHHHHhc----CCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHh-
Confidence 45789999999999988753 357899999999999999999988888775 99999999 99999999998877
Q ss_pred hccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhh------ccccCCccEEEEeCCccccccchh---
Q 045263 586 NMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAE------KVEFSALRLAIVDEQQRFGVVQRG--- 656 (742)
Q Consensus 586 ~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~------~v~~~~l~LVIIDEaHrfG~~qr~--- 656 (742)
+ +.+.+++|+......... .-.-...+|+|+|++.+.. .+...++++|||||+|++......
T Consensus 224 --~-----l~v~v~~~~~~~~~~~~~--~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~ 294 (968)
T 3dmq_A 224 --N-----LRFALFDDERYAEAQHDA--YNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSR 294 (968)
T ss_dssp --C-----CCCEECCHHHHHHHHHTT--CSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCH
T ss_pred --C-----CCEEEEccchhhhhhhhc--ccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchH
Confidence 3 456666664322211100 0111356899999998843 245668999999999999643321
Q ss_pred --hhhhhhhccccccccccccCCCCCCCCCCCCCcEEEEcCCCCH
Q 045263 657 --RFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIP 699 (742)
Q Consensus 657 --~l~~k~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPip 699 (742)
.....+ ....+++|+|||||++
T Consensus 295 ~~~~l~~L---------------------~~~~~~~L~LTATPi~ 318 (968)
T 3dmq_A 295 EYQAIEQL---------------------AEHVPGVLLLTATPEQ 318 (968)
T ss_dssp HHHHHHHH---------------------HTTCSSEEESCSSCSS
T ss_pred HHHHHHHH---------------------hhcCCcEEEEEcCCcc
Confidence 111111 0125689999999985
No 64
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.58 E-value=9.2e-15 Score=172.66 Aligned_cols=128 Identities=18% Similarity=0.160 Sum_probs=110.4
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhh
Q 045263 505 LRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLL 584 (742)
Q Consensus 505 ~~~lpf~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT~~La~Q~~~~l~~~l 584 (742)
.+.++|.+|+.|..++..++++ + +.++.||+|||++|.+|++.....|.+++|++||++||.|.++.+..++
T Consensus 77 ~r~lG~~pt~VQ~~~ip~ll~G-------~-Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~ 148 (844)
T 1tf5_A 77 RRVTGMFPFKVQLMGGVALHDG-------N-IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIF 148 (844)
T ss_dssp HHHHSCCCCHHHHHHHHHHHTT-------S-EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCcHHHHHhhHHHhCC-------C-EEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHH
Confidence 3468899999999999999874 2 9999999999999999998666679999999999999999999999999
Q ss_pred hhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHH-----hhc-------cccCCccEEEEeCCcccc
Q 045263 585 DNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLI-----AEK-------VEFSALRLAIVDEQQRFG 651 (742)
Q Consensus 585 ~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l-----~~~-------v~~~~l~LVIIDEaHrfG 651 (742)
..++ +++.++.|+.+..++...+ + ++|+||||+.+ .+. +.++.+.++||||+|++.
T Consensus 149 ~~lg-----l~v~~i~gg~~~~~r~~~~-----~-~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mL 216 (844)
T 1tf5_A 149 EFLG-----LTVGLNLNSMSKDEKREAY-----A-ADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSIL 216 (844)
T ss_dssp HHTT-----CCEEECCTTSCHHHHHHHH-----H-SSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHH
T ss_pred hhcC-----CeEEEEeCCCCHHHHHHhc-----C-CCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhh
Confidence 8888 8999999998876655432 2 79999999998 333 346789999999999974
No 65
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.54 E-value=1.3e-14 Score=163.89 Aligned_cols=152 Identities=16% Similarity=0.210 Sum_probs=109.8
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcC--CeEEEEcccHHHHHHHHHHHHHhhh
Q 045263 508 LPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSG--YQAAFMVPTELLATQHYEHLLKLLD 585 (742)
Q Consensus 508 lpf~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g--~qvlilaPT~~La~Q~~~~l~~~l~ 585 (742)
+...|+|+|.++++.+......+ .+.+|..+||+|||++++..+......+ .++||++|+ .|+.||.+++.++++
T Consensus 34 ~~~~L~~~Q~~~v~~l~~~~~~~--~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~-~l~~qw~~e~~~~~~ 110 (500)
T 1z63_A 34 IKANLRPYQIKGFSWMRFMNKLG--FGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPL-SVLKNWEEELSKFAP 110 (500)
T ss_dssp CSSCCCHHHHHHHHHHHHHHHTT--CCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECS-TTHHHHHHHHHHHCT
T ss_pred hhccchHHHHHHHHHHHHHhhCC--CCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccH-HHHHHHHHHHHHHCC
Confidence 44579999999998776433222 3789999999999999887777666544 789999996 588999999999875
Q ss_pred hccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhhc--cccCCccEEEEeCCccccccch--hhhhhh
Q 045263 586 NMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEK--VEFSALRLAIVDEQQRFGVVQR--GRFNSK 661 (742)
Q Consensus 586 ~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~~--v~~~~l~LVIIDEaHrfG~~qr--~~l~~k 661 (742)
. .++.+++|+... ...+..+|+|+|++.+... +...++++||+||+|++..... ......
T Consensus 111 ~-------~~v~~~~g~~~~---------~~~~~~~ivi~t~~~l~~~~~l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~ 174 (500)
T 1z63_A 111 H-------LRFAVFHEDRSK---------IKLEDYDIILTTYAVLLRDTRLKEVEWKYIVIDEAQNIKNPQTKIFKAVKE 174 (500)
T ss_dssp T-------SCEEECSSSTTS---------CCGGGSSEEEEEHHHHTTCHHHHTCCEEEEEEETGGGGSCTTSHHHHHHHT
T ss_pred C-------ceEEEEecCchh---------ccccCCcEEEeeHHHHhccchhcCCCcCEEEEeCccccCCHhHHHHHHHHh
Confidence 3 467778877532 1223479999999998543 3345789999999999843221 111110
Q ss_pred hhccccccccccccCCCCCCCCCCCCCcEEEEcCCCCHHH
Q 045263 662 LYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRT 701 (742)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPiprt 701 (742)
+ ..++.+++||||+...
T Consensus 175 ----------------------l-~~~~~l~LTaTP~~n~ 191 (500)
T 1z63_A 175 ----------------------L-KSKYRIALTGTPIENK 191 (500)
T ss_dssp ----------------------S-CEEEEEEECSSCSTTC
T ss_pred ----------------------h-ccCcEEEEecCCCCCC
Confidence 1 2457899999997643
No 66
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.54 E-value=2.3e-15 Score=176.89 Aligned_cols=162 Identities=19% Similarity=0.240 Sum_probs=101.8
Q ss_pred CCCHHHH-----HHHHHHHH--hcCCCCCCceEEEccCCChHHHHHHHHHHHH-HhcCCeEEEEcccHHHHHHHHHHHHH
Q 045263 511 SLTSSQL-----SAISEIIW--DLKQPVPMNRLLQGDVGCGKTVVAFLACMEV-IGSGYQAAFMVPTELLATQHYEHLLK 582 (742)
Q Consensus 511 ~Lt~~Q~-----~aI~~I~~--~~~~~~~~~~LL~a~TGSGKT~val~ail~~-l~~g~qvlilaPT~~La~Q~~~~l~~ 582 (742)
.+|+.|+ ++|+.++. -+.. .++++++||||||||++|+++++.. ...+.+++||+||++||.|+++.+..
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~--g~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~~ 292 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKK--RQLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRG 292 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGST--TCEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT
T ss_pred ccCceeeccccccchHHHhhHHHHhc--CCeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhc
Confidence 4788888 88877661 1112 3589999999999999999998876 45678999999999999999998874
Q ss_pred hhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHH----hhccccCCccEEEEeCCcccccc---ch
Q 045263 583 LLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLI----AEKVEFSALRLAIVDEQQRFGVV---QR 655 (742)
Q Consensus 583 ~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l----~~~v~~~~l~LVIIDEaHrfG~~---qr 655 (742)
+ + +. ...+... .+.....-+-+.+.+.+ .....+.++++|||||+|+++.. ++
T Consensus 293 ~----~-----i~--~~~~~l~---------~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~~~~~~~~ 352 (673)
T 2wv9_A 293 L----P-----VR--YLTPAVQ---------REHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPASIAAR 352 (673)
T ss_dssp S----C-----CE--ECCC------------CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCCHHHHHHH
T ss_pred C----C-----ee--eeccccc---------ccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccCccHHHHH
Confidence 3 2 22 2121110 01111112223333322 12346899999999999999543 23
Q ss_pred hhhhhhhhccccccccccccCCCCCCCCCCCCCcEEEEcCCCCHHHHHHHHcCCCCeeeeccCCCCCCCcEEEE
Q 045263 656 GRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYI 729 (742)
Q Consensus 656 ~~l~~k~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPiprtla~~l~gdl~~s~I~e~P~gr~~i~t~~ 729 (742)
..+.... ....+++|+|||||+++ +.+.+.++.|+.+..
T Consensus 353 ~~l~~~~---------------------~~~~~~vl~~SAT~~~~--------------i~~~~~~~~~i~~v~ 391 (673)
T 2wv9_A 353 GYIATRV---------------------EAGEAAAIFMTATPPGT--------------SDPFPDTNSPVHDVS 391 (673)
T ss_dssp HHHHHHH---------------------HTTSCEEEEECSSCTTC--------------CCSSCCCSSCEEEEE
T ss_pred HHHHHhc---------------------cccCCcEEEEcCCCChh--------------hhhhcccCCceEEEe
Confidence 3332221 00257899999999644 456666777776654
No 67
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.54 E-value=2.6e-14 Score=168.91 Aligned_cols=130 Identities=15% Similarity=0.181 Sum_probs=111.7
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHH
Q 045263 503 KLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLK 582 (742)
Q Consensus 503 ~~~~~lpf~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT~~La~Q~~~~l~~ 582 (742)
...+.+++.+++.|..++..++++ .+.++.||+|||++|.+|++.....|.+++|++||+.||.|.++.+..
T Consensus 103 a~~R~lG~rP~~VQ~~~ip~Ll~G--------~Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~ 174 (922)
T 1nkt_A 103 AAWRVLDQRPFDVQVMGAAALHLG--------NVAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGR 174 (922)
T ss_dssp HHHHHHSCCCCHHHHHHHHHHHTT--------EEEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHhHhcC--------CEEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHH
Confidence 344568999999999999998864 299999999999999999987667799999999999999999999999
Q ss_pred hhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHH-----hh-------ccccCCccEEEEeCCccc
Q 045263 583 LLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLI-----AE-------KVEFSALRLAIVDEQQRF 650 (742)
Q Consensus 583 ~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l-----~~-------~v~~~~l~LVIIDEaHrf 650 (742)
++..++ ++++++.|+.+..++...+ .++|++|||+.+ .+ .+.+..+.++||||+|++
T Consensus 175 l~~~lG-----Lsv~~i~gg~~~~~r~~~y------~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsm 243 (922)
T 1nkt_A 175 VHRFLG-----LQVGVILATMTPDERRVAY------NADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSI 243 (922)
T ss_dssp HHHHTT-----CCEEECCTTCCHHHHHHHH------HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHH
T ss_pred HHhhcC-----CeEEEEeCCCCHHHHHHhc------CCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHH
Confidence 999888 9999999999876665433 279999999998 22 245678999999999987
Q ss_pred c
Q 045263 651 G 651 (742)
Q Consensus 651 G 651 (742)
.
T Consensus 244 L 244 (922)
T 1nkt_A 244 L 244 (922)
T ss_dssp H
T ss_pred H
Confidence 4
No 68
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.52 E-value=4.3e-15 Score=166.44 Aligned_cols=121 Identities=16% Similarity=0.172 Sum_probs=82.6
Q ss_pred CceEEEccCCChHHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHH
Q 045263 533 MNRLLQGDVGCGKTVVAFLACMEVI-GSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMI 611 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~ail~~l-~~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i 611 (742)
.+++++||||||||++|+.+++..+ ..+.+++|++||++||.|+++.+.. ..+....+...
T Consensus 9 ~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~~-----------~~v~~~~~~~~------- 70 (440)
T 1yks_A 9 MTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHG-----------LDVKFHTQAFS------- 70 (440)
T ss_dssp CEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT-----------SCEEEESSCCC-------
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHhc-----------CCeEEecccce-------
Confidence 4899999999999999999988855 4567999999999999999998774 23333333221
Q ss_pred HHHhhcCCccEEEechHHHh-------------hccccCCccEEEEeCCccccccchh--hhhhhhhccccccccccccC
Q 045263 612 RKDLQTGDITLVIGTHSLIA-------------EKVEFSALRLAIVDEQQRFGVVQRG--RFNSKLYYTSMSSGMAMVNS 676 (742)
Q Consensus 612 ~~~l~~G~~~IVVgT~~~l~-------------~~v~~~~l~LVIIDEaHrfG~~qr~--~l~~k~~~~~~~~~~~~~~~ 676 (742)
+|+||+.+. +...+.++++|||||+|++...... .+.....
T Consensus 71 -----------~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~~~~~------------- 126 (440)
T 1yks_A 71 -----------AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRA------------- 126 (440)
T ss_dssp -----------CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHH-------------
T ss_pred -----------eccCCccceeeecccchhHhhhCcccccCccEEEEECccccCcchHHHHHHHHHHh-------------
Confidence 244443332 2334899999999999998221111 1111100
Q ss_pred CCCCCCCCCCCCcEEEEcCCCCHHHH
Q 045263 677 DGSPKDDQHMAPHVLAMSATPIPRTL 702 (742)
Q Consensus 677 ~~~~r~~~~~~p~vL~mSATPiprtl 702 (742)
....+++++|||||++++.
T Consensus 127 -------~~~~~~~l~~SAT~~~~~~ 145 (440)
T 1yks_A 127 -------RANESATILMTATPPGTSD 145 (440)
T ss_dssp -------HTTSCEEEEECSSCTTCCC
T ss_pred -------ccCCceEEEEeCCCCchhh
Confidence 0125789999999988754
No 69
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.50 E-value=6.6e-15 Score=171.75 Aligned_cols=102 Identities=17% Similarity=0.091 Sum_probs=82.6
Q ss_pred CceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHH
Q 045263 533 MNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIR 612 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~ 612 (742)
.+++++||||||||.++.++++. .|.++++++||++||.|+++++.+.+. ..+....|...
T Consensus 233 ~~vlv~ApTGSGKT~a~~l~ll~---~g~~vLVl~PTReLA~Qia~~l~~~~g--------~~vg~~vG~~~-------- 293 (666)
T 3o8b_A 233 QVAHLHAPTGSGKSTKVPAAYAA---QGYKVLVLNPSVAATLGFGAYMSKAHG--------IDPNIRTGVRT-------- 293 (666)
T ss_dssp EEEEEECCTTSCTTTHHHHHHHH---TTCCEEEEESCHHHHHHHHHHHHHHHS--------CCCEEECSSCE--------
T ss_pred CeEEEEeCCchhHHHHHHHHHHH---CCCeEEEEcchHHHHHHHHHHHHHHhC--------CCeeEEECcEe--------
Confidence 37899999999999998888764 588999999999999999998877653 45667777654
Q ss_pred HHhhcCCccEEEechHHHhh--ccccCCccEEEEeCCccccccchh
Q 045263 613 KDLQTGDITLVIGTHSLIAE--KVEFSALRLAIVDEQQRFGVVQRG 656 (742)
Q Consensus 613 ~~l~~G~~~IVVgT~~~l~~--~v~~~~l~LVIIDEaHrfG~~qr~ 656 (742)
..+..+|+|+||+++.. .+.++++++|||||+|.++.....
T Consensus 294 ---~~~~~~IlV~TPGrLl~~~~l~l~~l~~lVlDEAH~l~~~~~~ 336 (666)
T 3o8b_A 294 ---ITTGAPVTYSTYGKFLADGGCSGGAYDIIICDECHSTDSTTIL 336 (666)
T ss_dssp ---ECCCCSEEEEEHHHHHHTTSCCTTSCSEEEETTTTCCSHHHHH
T ss_pred ---ccCCCCEEEECcHHHHhCCCcccCcccEEEEccchhcCccHHH
Confidence 24568999999999865 445677999999999998765543
No 70
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.48 E-value=7.5e-15 Score=164.85 Aligned_cols=149 Identities=15% Similarity=0.098 Sum_probs=97.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHH-HhcCCeEEEEcccHHHHHHHHHHHHHhhhhccC
Q 045263 511 SLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEV-IGSGYQAAFMVPTELLATQHYEHLLKLLDNMEE 589 (742)
Q Consensus 511 ~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~-l~~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~ 589 (742)
+++|.|+ +|+.++++. .++++++|||||||.+|+.+++.. +..|.+++|++||++|+.|+++.+..
T Consensus 4 q~~~iq~-~i~~~l~~~-----~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g------- 70 (451)
T 2jlq_A 4 MGEPDYE-VDEDIFRKK-----RLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALRG------- 70 (451)
T ss_dssp CCSCCCC-CCGGGGSTT-----CEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT-------
T ss_pred CCCCcHH-HHHHHHhcC-----CeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhcC-------
Confidence 3677764 676666531 255999999999999988888754 45678999999999999999998752
Q ss_pred CCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhh----ccccCCccEEEEeCCccccccchhhhhhhhhcc
Q 045263 590 DKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAE----KVEFSALRLAIVDEQQRFGVVQRGRFNSKLYYT 665 (742)
Q Consensus 590 ~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~----~v~~~~l~LVIIDEaHrfG~~qr~~l~~k~~~~ 665 (742)
..+....+.... ...+...|.+.|++.+.. ...+.++++|||||+|++....... .......
T Consensus 71 ----~~v~~~~~~~~~---------~~~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~-~~~~~~~ 136 (451)
T 2jlq_A 71 ----LPIRYQTPAVKS---------DHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAA-RGYISTR 136 (451)
T ss_dssp ----SCEEECCTTCSC---------CCCSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCCSHHHHHH-HHHHHHH
T ss_pred ----ceeeeeeccccc---------cCCCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccCCcchHHH-HHHHHHh
Confidence 233322222211 113345788899887632 3457899999999999974322211 1100000
Q ss_pred ccccccccccCCCCCCCCCCCCCcEEEEcCCCCHHHHH
Q 045263 666 SMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLA 703 (742)
Q Consensus 666 ~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPiprtla 703 (742)
. ....+++++|||||.++...
T Consensus 137 ----------------~-~~~~~~~i~~SAT~~~~~~~ 157 (451)
T 2jlq_A 137 ----------------V-EMGEAAAIFMTATPPGSTDP 157 (451)
T ss_dssp ----------------H-HTTSCEEEEECSSCTTCCCS
T ss_pred ----------------h-cCCCceEEEEccCCCccchh
Confidence 0 11257899999998765433
No 71
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.48 E-value=4.3e-14 Score=172.67 Aligned_cols=153 Identities=18% Similarity=0.266 Sum_probs=105.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCC--------CCCceEEEccCCChHHHHHHHHHHHHHhc---CCeEEEEcccHHHHHHHHH
Q 045263 510 YSLTSSQLSAISEIIWDLKQP--------VPMNRLLQGDVGCGKTVVAFLACMEVIGS---GYQAAFMVPTELLATQHYE 578 (742)
Q Consensus 510 f~Lt~~Q~~aI~~I~~~~~~~--------~~~~~LL~a~TGSGKT~val~ail~~l~~---g~qvlilaPT~~La~Q~~~ 578 (742)
+.|+++|..|++.+++.+..+ ...+.+++++||||||++++.++ ..+.. ..++||++|+++|+.|+.+
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~-~ll~~~~~~~rvLvlvpr~eL~~Q~~~ 348 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAA-RLATELDFIDKVFFVVDRKDLDYQTMK 348 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHH-HHHTTCTTCCEEEEEECGGGCCHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHH-HHHHhcCCCceEEEEeCcHHHHHHHHH
Confidence 459999999999998754211 12478999999999999985444 55542 3699999999999999999
Q ss_pred HHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhhc-------cccCCccEEEEeCCcccc
Q 045263 579 HLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEK-------VEFSALRLAIVDEQQRFG 651 (742)
Q Consensus 579 ~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~~-------v~~~~l~LVIIDEaHrfG 651 (742)
.+..+... . +.|..+.... ...+..+..+|+|+|++.+... ..+....+||+|||||+.
T Consensus 349 ~f~~f~~~-~----------v~~~~s~~~l---~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~ 414 (1038)
T 2w00_A 349 EYQRFSPD-S----------VNGSENTAGL---KRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQ 414 (1038)
T ss_dssp HHHTTSTT-C----------SSSSCCCHHH---HHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTH
T ss_pred HHHHhccc-c----------cccccCHHHH---HHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhc
Confidence 99886532 1 1233332222 2234455689999999988542 135677899999999975
Q ss_pred ccc-hhhhhhhhhccccccccccccCCCCCCCCCCCCCcEEEEcCCCCHH
Q 045263 652 VVQ-RGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPR 700 (742)
Q Consensus 652 ~~q-r~~l~~k~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPipr 700 (742)
... ...+... ..+.++|+|||||+..
T Consensus 415 ~~~~~~~I~~~-----------------------~p~a~~lgfTATP~~~ 441 (1038)
T 2w00_A 415 FGEAQKNLKKK-----------------------FKRYYQFGFTGTPIFP 441 (1038)
T ss_dssp HHHHHHHHHHH-----------------------CSSEEEEEEESSCCCS
T ss_pred chHHHHHHHHh-----------------------CCcccEEEEeCCcccc
Confidence 422 1222221 1246899999999853
No 72
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.45 E-value=1e-12 Score=153.97 Aligned_cols=162 Identities=15% Similarity=0.151 Sum_probs=112.2
Q ss_pred CCCCHHHHHHHHHHHHhcCC---CCCCceEEEccCCChHHHHHHHHHHHHHhcC-------CeEEEEcccHHHHHHHHHH
Q 045263 510 YSLTSSQLSAISEIIWDLKQ---PVPMNRLLQGDVGCGKTVVAFLACMEVIGSG-------YQAAFMVPTELLATQHYEH 579 (742)
Q Consensus 510 f~Lt~~Q~~aI~~I~~~~~~---~~~~~~LL~a~TGSGKT~val~ail~~l~~g-------~qvlilaPT~~La~Q~~~~ 579 (742)
..|+|+|.+++..+...... ....+.||..+||+|||+.++..+...+..+ .++||++|+ .|+.||.++
T Consensus 54 ~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E 132 (644)
T 1z3i_X 54 KVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNE 132 (644)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHH
T ss_pred hcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHH
Confidence 47999999999998764321 2234679999999999999998888777654 469999998 789999999
Q ss_pred HHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcC----CccEEEechHHHhh---ccccCCccEEEEeCCccccc
Q 045263 580 LLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTG----DITLVIGTHSLIAE---KVEFSALRLAIVDEQQRFGV 652 (742)
Q Consensus 580 l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G----~~~IVVgT~~~l~~---~v~~~~l~LVIIDEaHrfG~ 652 (742)
+.++++. . +.+..++|+........+...+..+ ..+|+|+|++.+.. .+.-.++++||+||+|++.-
T Consensus 133 ~~~~~~~-~-----~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~l~~~~~~~vI~DEaH~ikn 206 (644)
T 1z3i_X 133 VGKWLGG-R-----VQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEVLHKGKVGLVICDEGHRLKN 206 (644)
T ss_dssp HHHHHGG-G-----CCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTTTTTSCCCEEEETTGGGCCT
T ss_pred HHHHcCC-C-----eeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHHhhcCCccEEEEECceecCC
Confidence 9999865 2 4566666655433222222222221 47899999998854 23345789999999999732
Q ss_pred c--chhhhhhhhhccccccccccccCCCCCCCCCCCCCcEEEEcCCCCHHH
Q 045263 653 V--QRGRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRT 701 (742)
Q Consensus 653 ~--qr~~l~~k~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPiprt 701 (742)
. +........ ...+.+++||||+...
T Consensus 207 ~~~~~~~al~~l-----------------------~~~~rl~LTgTPiqN~ 234 (644)
T 1z3i_X 207 SDNQTYLALNSM-----------------------NAQRRVLISGTPIQND 234 (644)
T ss_dssp TCHHHHHHHHHH-----------------------CCSEEEEECSSCSGGG
T ss_pred hhhHHHHHHHhc-----------------------ccCcEEEEecCcccCC
Confidence 1 111111110 2457899999998654
No 73
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.42 E-value=4.7e-13 Score=150.62 Aligned_cols=99 Identities=17% Similarity=0.187 Sum_probs=70.2
Q ss_pred CceEEEccCCChHHHHHHHHHHHHHh-cCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHH
Q 045263 533 MNRLLQGDVGCGKTVVAFLACMEVIG-SGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMI 611 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~ail~~l~-~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i 611 (742)
.++++++|||||||.+|+++++..+. .|.+++|++||++|+.|+++.+.. ..+....+.....
T Consensus 22 ~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g-----------~~v~~~~~~~~~~----- 85 (459)
T 2z83_A 22 QMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALRG-----------LPVRYQTSAVQRE----- 85 (459)
T ss_dssp CEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTTT-----------SCEEECC-----------
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhcC-----------ceEeEEecccccC-----
Confidence 38899999999999999999887654 688999999999999999998862 2333333222110
Q ss_pred HHHhhcCCccEEEechHHHh----hccccCCccEEEEeCCcccc
Q 045263 612 RKDLQTGDITLVIGTHSLIA----EKVEFSALRLAIVDEQQRFG 651 (742)
Q Consensus 612 ~~~l~~G~~~IVVgT~~~l~----~~v~~~~l~LVIIDEaHrfG 651 (742)
......+.+.|++.+. ....+.++++|||||+|+++
T Consensus 86 ----~t~~~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~ 125 (459)
T 2z83_A 86 ----HQGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTD 125 (459)
T ss_dssp ------CCCSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCS
T ss_pred ----CCCCcEEEEEchHHHHHHhhccccccCCcEEEEECCccCC
Confidence 1223456677776552 23458899999999999963
No 74
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.40 E-value=7.7e-13 Score=158.65 Aligned_cols=132 Identities=17% Similarity=0.150 Sum_probs=98.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHh---cCCeEEEEcccHHHHHHHHHHHHHhhh
Q 045263 509 PYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIG---SGYQAAFMVPTELLATQHYEHLLKLLD 585 (742)
Q Consensus 509 pf~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~---~g~qvlilaPT~~La~Q~~~~l~~~l~ 585 (742)
+.+|+|+|.++++.+......+ .+.+|..+||+|||++++..+...+. .+.++||++| ..|+.||.+++.++++
T Consensus 234 ~~~Lr~yQ~egv~~l~~~~~~~--~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~p 310 (800)
T 3mwy_W 234 GGELRDFQLTGINWMAFLWSKG--DNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWAP 310 (800)
T ss_dssp SSCCCTHHHHHHHHHHHHHTTT--CCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHST
T ss_pred CCCcCHHHHHHHHHHHHHhhcC--CCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHCC
Confidence 3479999999999887655444 38899999999999998887766543 2568999999 5788999999999875
Q ss_pred hccCCCCCcEEEEEeCCCChHHHHHHHH--------HhhcCCccEEEechHHHhh---ccccCCccEEEEeCCccc
Q 045263 586 NMEEDKHKPKIALLTGSTPVKQSRMIRK--------DLQTGDITLVIGTHSLIAE---KVEFSALRLAIVDEQQRF 650 (742)
Q Consensus 586 ~~~~~~~~i~V~ll~G~~~~~er~~i~~--------~l~~G~~~IVVgT~~~l~~---~v~~~~l~LVIIDEaHrf 650 (742)
. ..+.+++|..........+. ....+..+|+|+|++.+.. .+.-.++++|||||+|++
T Consensus 311 ~-------~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~~~~w~~vIvDEaH~l 379 (800)
T 3mwy_W 311 D-------LNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELGSIKWQFMAVDEAHRL 379 (800)
T ss_dssp T-------CCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHHTSEEEEEEETTGGGG
T ss_pred C-------ceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHHhcCCcceeehhhhhhh
Confidence 4 56788888765433322211 1234567899999998854 222346889999999998
No 75
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.40 E-value=6.6e-13 Score=152.74 Aligned_cols=134 Identities=17% Similarity=0.144 Sum_probs=100.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhhhhcc
Q 045263 509 PYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNME 588 (742)
Q Consensus 509 pf~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT~~La~Q~~~~l~~~l~~~~ 588 (742)
+|+++|+|.++++.+.+.+..+. +.++++|||+|||++|++|++. .+.+++|++||++|+.|+.+++..+....+
T Consensus 1 ~~~~r~~Q~~~~~~v~~~l~~~~--~~~~~a~TGtGKT~~~l~p~l~---~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~ 75 (551)
T 3crv_A 1 MVKLRDWQEKLKDKVIEGLRNNF--LVALNAPTGSGKTLFSLLVSLE---VKPKVLFVVRTHNEFYPIYRDLTKIREKRN 75 (551)
T ss_dssp CCSCCHHHHHHHHHHHHHHHTTC--EEEEECCTTSSHHHHHHHHHHH---HCSEEEEEESSGGGHHHHHHHHTTCCCSSC
T ss_pred CCCCCHHHHHHHHHHHHHHHcCC--cEEEECCCCccHHHHHHHHHHh---CCCeEEEEcCCHHHHHHHHHHHHHHhhhcC
Confidence 47899999999999988776554 8999999999999999999987 588999999999999999998887755444
Q ss_pred CCCCCcEEEEEeCCCCh---H---------------------------HHHHHHH-----------------HhhcCCcc
Q 045263 589 EDKHKPKIALLTGSTPV---K---------------------------QSRMIRK-----------------DLQTGDIT 621 (742)
Q Consensus 589 ~~~~~i~V~ll~G~~~~---~---------------------------er~~i~~-----------------~l~~G~~~ 621 (742)
+++..+.|.... . .....+. +-....++
T Consensus 76 -----~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~ad 150 (551)
T 3crv_A 76 -----ITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKAD 150 (551)
T ss_dssp -----CCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCS
T ss_pred -----ccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCC
Confidence 778887773210 0 0001111 11123489
Q ss_pred EEEechHHHhhcc-----c-cCCccEEEEeCCccccc
Q 045263 622 LVIGTHSLIAEKV-----E-FSALRLAIVDEQQRFGV 652 (742)
Q Consensus 622 IVVgT~~~l~~~v-----~-~~~l~LVIIDEaHrfG~ 652 (742)
|||+||+.+.+.. . ..+...+||||||++..
T Consensus 151 IVV~~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 151 VIALTYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp EEEEETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred EEEeCchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 9999999986521 1 13566899999999744
No 76
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.32 E-value=4.8e-13 Score=155.97 Aligned_cols=142 Identities=15% Similarity=0.106 Sum_probs=92.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHhhhhccCC
Q 045263 512 LTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVI-GSGYQAAFMVPTELLATQHYEHLLKLLDNMEED 590 (742)
Q Consensus 512 Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l-~~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~ 590 (742)
++|.|+.+++.+.+ + .+++++++||||||.+|+++++..+ ..+.+++|++||++||.|+++.+..
T Consensus 172 ~lpiq~~~i~~l~~----g--~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~~-------- 237 (618)
T 2whx_A 172 GEPDYEVDEDIFRK----K--RLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALRG-------- 237 (618)
T ss_dssp CCCCCCCCGGGGST----T--CEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT--------
T ss_pred CCCccccCHHHHhc----C--CeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhcC--------
Confidence 45555554444333 2 3899999999999999998888765 4577999999999999999988762
Q ss_pred CCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhh----ccccCCccEEEEeCCccccccch---hhhhhhhh
Q 045263 591 KHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAE----KVEFSALRLAIVDEQQRFGVVQR---GRFNSKLY 663 (742)
Q Consensus 591 ~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~----~v~~~~l~LVIIDEaHrfG~~qr---~~l~~k~~ 663 (742)
..+. +.+..-. ........+.+.|++.+.. ...+.++++|||||+|++..... ..+.....
T Consensus 238 ---~~v~-~~~~~l~--------~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~i~~~l~ 305 (618)
T 2whx_A 238 ---LPIR-YQTPAVK--------SDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVE 305 (618)
T ss_dssp ---SCEE-ECCTTSS--------CCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCCSHHHHHHHHHHHHHHH
T ss_pred ---Ccee-Eecccce--------eccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCCCccHHHHHHHHHHHhc
Confidence 2343 2222100 0122234566677765532 33478999999999999843222 22222110
Q ss_pred ccccccccccccCCCCCCCCCCCCCcEEEEcCCCCHH
Q 045263 664 YTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPR 700 (742)
Q Consensus 664 ~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPipr 700 (742)
...+++++|||||.+.
T Consensus 306 ---------------------~~~~q~il~SAT~~~~ 321 (618)
T 2whx_A 306 ---------------------MGEAAAIFMTATPPGS 321 (618)
T ss_dssp ---------------------HTSCEEEEECSSCTTC
T ss_pred ---------------------ccCccEEEEECCCchh
Confidence 0246899999998554
No 77
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.29 E-value=4.5e-12 Score=145.55 Aligned_cols=129 Identities=21% Similarity=0.206 Sum_probs=87.1
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhhhhc
Q 045263 508 LPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNM 587 (742)
Q Consensus 508 lpf~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT~~La~Q~~~~l~~~l~~~ 587 (742)
.+|+++++|.+++.++...+..+. +.++++|||+|||.+|++|++. .+.+++|++||++|++|+.+++..+
T Consensus 4 ~~~~~r~~Q~~~~~~v~~~~~~~~--~~~~~a~TGtGKT~~~l~~~~~---~~~~~~~~~~t~~l~~q~~~~~~~l---- 74 (540)
T 2vl7_A 4 LKLQLRQWQAEKLGEAINALKHGK--TLLLNAKPGLGKTVFVEVLGMQ---LKKKVLIFTRTHSQLDSIYKNAKLL---- 74 (540)
T ss_dssp -----CCHHHHHHHHHHHHHHTTC--EEEEECCTTSCHHHHHHHHHHH---HTCEEEEEESCHHHHHHHHHHHGGG----
T ss_pred CCCCCCHHHHHHHHHHHHHHHcCC--CEEEEcCCCCcHHHHHHHHHHh---CCCcEEEEcCCHHHHHHHHHHHHhc----
Confidence 467999999999999887765554 8999999999999999999864 4789999999999999999887763
Q ss_pred cCCCCCcEEEEEeCCCCh--------H-H--------------------HHHHHHHh--------------hcCCccEEE
Q 045263 588 EEDKHKPKIALLTGSTPV--------K-Q--------------------SRMIRKDL--------------QTGDITLVI 624 (742)
Q Consensus 588 ~~~~~~i~V~ll~G~~~~--------~-e--------------------r~~i~~~l--------------~~G~~~IVV 624 (742)
+ +++.++.|.... . + ....|..+ ....++|||
T Consensus 75 ~-----~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~~adiVV 149 (540)
T 2vl7_A 75 G-----LKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLKDKDVIA 149 (540)
T ss_dssp T-----CCEEEC---------------------------------------------------------CTTGGGCSEEE
T ss_pred C-----CcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhhcCCEEE
Confidence 2 455555553210 0 0 00112111 112479999
Q ss_pred echHHHhhcc------------ccCCccEEEEeCCccc
Q 045263 625 GTHSLIAEKV------------EFSALRLAIVDEQQRF 650 (742)
Q Consensus 625 gT~~~l~~~v------------~~~~l~LVIIDEaHrf 650 (742)
+||+.+.+.. .+.+..++||||||++
T Consensus 150 ~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl 187 (540)
T 2vl7_A 150 MTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNL 187 (540)
T ss_dssp EETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGG
T ss_pred EChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccH
Confidence 9999886511 1345679999999997
No 78
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.28 E-value=6.2e-12 Score=150.12 Aligned_cols=186 Identities=15% Similarity=0.135 Sum_probs=115.9
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHH-Hhc--CCeEEEEcccHHHHHHHHHHHH
Q 045263 505 LRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEV-IGS--GYQAAFMVPTELLATQHYEHLL 581 (742)
Q Consensus 505 ~~~lpf~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~-l~~--g~qvlilaPT~~La~Q~~~~l~ 581 (742)
++..+..|++.|+++|..++.+- .+++++||||||||...-..++.. ... |.++++++|+++|+.|+++++.
T Consensus 87 l~~r~~lP~~~q~~~i~~~l~~~-----~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~ 161 (773)
T 2xau_A 87 LKIRRELPVHAQRDEFLKLYQNN-----QIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVA 161 (773)
T ss_dssp HHHHTTSGGGGGHHHHHHHHHHC-----SEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHH
T ss_pred HHHhhcCChHHHHHHHHHHHhCC-----CeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHH
Confidence 33334568999999999998752 368999999999999322222221 122 6679999999999999999887
Q ss_pred Hhhhh-ccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhh----ccccCCccEEEEeCCccccccch-
Q 045263 582 KLLDN-MEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAE----KVEFSALRLAIVDEQQRFGVVQR- 655 (742)
Q Consensus 582 ~~l~~-~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~----~v~~~~l~LVIIDEaHrfG~~qr- 655 (742)
..+.. .+ ..++.-.... .......+|+++|++.+.. ...+.++++|||||+|..+....
T Consensus 162 ~~~~~~v~-----~~vG~~i~~~----------~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~ 226 (773)
T 2xau_A 162 EEMDVKLG-----EEVGYSIRFE----------NKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDI 226 (773)
T ss_dssp HHTTCCBT-----TTEEEEETTE----------EECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHH
T ss_pred HHhCCchh-----heecceeccc----------cccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHH
Confidence 66531 11 1222111100 0112457999999998754 34688999999999996333211
Q ss_pred -hhhhhhhhccccccccccccCCCCCCCCCCCCCcEEEEcCCCCHHHHHHHHcCCCCeeeeccCCCCCCCcEEEEEcCC
Q 045263 656 -GRFNSKLYYTSMSSGMAMVNSDGSPKDDQHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRIPIKTYIIEGN 733 (742)
Q Consensus 656 -~~l~~k~~~~~~~~~~~~~~~~~~~r~~~~~~p~vL~mSATPiprtla~~l~gdl~~s~I~e~P~gr~~i~t~~~~~~ 733 (742)
..+...... .....++++||||+.++.++... +...+..+ +....||+.++....
T Consensus 227 ~~~~l~~l~~-------------------~~~~~~iIl~SAT~~~~~l~~~~-~~~~vi~v---~gr~~pv~~~~~~~~ 282 (773)
T 2xau_A 227 LMGLLKQVVK-------------------RRPDLKIIIMSATLDAEKFQRYF-NDAPLLAV---PGRTYPVELYYTPEF 282 (773)
T ss_dssp HHHHHHHHHH-------------------HCTTCEEEEEESCSCCHHHHHHT-TSCCEEEC---CCCCCCEEEECCSSC
T ss_pred HHHHHHHHHH-------------------hCCCceEEEEeccccHHHHHHHh-cCCCcccc---cCcccceEEEEecCC
Confidence 111111100 01246799999999888777654 43333333 333457777765543
No 79
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.24 E-value=8.1e-12 Score=146.74 Aligned_cols=136 Identities=20% Similarity=0.164 Sum_probs=93.9
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcC------CCCCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcccHHH
Q 045263 499 SLTKKLLRALPYSLTSSQLSAISEIIWDLK------QPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELL 572 (742)
Q Consensus 499 ~l~~~~~~~lpf~Lt~~Q~~aI~~I~~~~~------~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT~~L 572 (742)
.+++-..+.+|+.-+..|.++|.++..... .-...+++++||||||||..++.. +....+++|++||++|
T Consensus 116 ~f~~~~~~~fp~~e~~d~l~~i~dl~~p~~~~p~ar~l~rk~vlv~apTGSGKT~~al~~----l~~~~~gl~l~PtR~L 191 (677)
T 3rc3_A 116 FFLRHAKQIFPVLDCKDDLRKISDLRIPPNWYPDARAMQRKIIFHSGPTNSGKTYHAIQK----YFSAKSGVYCGPLKLL 191 (677)
T ss_dssp HHHHHHHHHCGGGGCHHHHHHHTBCCCGGGGCHHHHTSCCEEEEEECCTTSSHHHHHHHH----HHHSSSEEEEESSHHH
T ss_pred hHHHHHHhhCCCcCCHHHHHHHhhccChhhhCHHHHhcCCCEEEEEcCCCCCHHHHHHHH----HHhcCCeEEEeCHHHH
Confidence 344555677888778899888754322110 012246899999999999844433 3344667999999999
Q ss_pred HHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhhccccCCccEEEEeCCccccc
Q 045263 573 ATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGV 652 (742)
Q Consensus 573 a~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~~v~~~~l~LVIIDEaHrfG~ 652 (742)
|.|+++++.+. + +.+.+++|+...-. .......+++++|++.+. ....+++|||||+|+++.
T Consensus 192 A~Qi~~~l~~~----g-----~~v~lltG~~~~iv------~TpGr~~~il~~T~e~~~---l~~~v~lvVIDEaH~l~d 253 (677)
T 3rc3_A 192 AHEIFEKSNAA----G-----VPCDLVTGEERVTV------QPNGKQASHVSCTVEMCS---VTTPYEVAVIDEIQMIRD 253 (677)
T ss_dssp HHHHHHHHHHT----T-----CCEEEECSSCEECC------STTCCCCSEEEEEGGGCC---SSSCEEEEEECSGGGGGC
T ss_pred HHHHHHHHHhc----C-----CcEEEEECCeeEEe------cCCCcccceeEecHhHhh---hcccCCEEEEecceecCC
Confidence 99999998874 4 68899999865300 000113678899887652 346789999999999866
Q ss_pred cchh
Q 045263 653 VQRG 656 (742)
Q Consensus 653 ~qr~ 656 (742)
.++.
T Consensus 254 ~~~g 257 (677)
T 3rc3_A 254 PARG 257 (677)
T ss_dssp TTTH
T ss_pred ccch
Confidence 5554
No 80
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=98.81 E-value=2.7e-08 Score=115.87 Aligned_cols=129 Identities=14% Similarity=0.070 Sum_probs=104.9
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHH
Q 045263 503 KLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLK 582 (742)
Q Consensus 503 ~~~~~lpf~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT~~La~Q~~~~l~~ 582 (742)
.-.+.++..+.+.|.-..-.+.++ .+.++.||+|||+++.+|++.....|++|.+++||..||.|-++.+..
T Consensus 67 Aa~R~lg~r~~dvQligg~~L~~G--------~iaEM~TGEGKTLva~lp~~lnAL~G~~vhVvT~ndyLA~rdae~m~~ 138 (822)
T 3jux_A 67 AARRTLGMRPFDVQVMGGIALHEG--------KVAEMKTGEGKTLAATMPIYLNALIGKGVHLVTVNDYLARRDALWMGP 138 (822)
T ss_dssp HHHHHTSCCCCHHHHHHHHHHHTT--------CEEECCTTSCHHHHTHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCcHHHHHHHHHHhCC--------ChhhccCCCCccHHHHHHHHHHHhcCCceEEEeccHHHHHhHHHHHHH
Confidence 334567888999998877666543 399999999999999999987788899999999999999999999999
Q ss_pred hhhhccCCCCCcEEEEEeC--------------------------------------------------CCChHHHHHHH
Q 045263 583 LLDNMEEDKHKPKIALLTG--------------------------------------------------STPVKQSRMIR 612 (742)
Q Consensus 583 ~l~~~~~~~~~i~V~ll~G--------------------------------------------------~~~~~er~~i~ 612 (742)
++..+| ++|+++.+ +++..+|+..+
T Consensus 139 l~~~Lg-----lsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY 213 (822)
T 3jux_A 139 VYLFLG-----LRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAY 213 (822)
T ss_dssp HHHHTT-----CCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHH
T ss_pred HHHHhC-----CEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHh
Confidence 999998 89999887 45556666665
Q ss_pred HHhhcCCccEEEechHHH-----hhc-------cccCCccEEEEeCCccc
Q 045263 613 KDLQTGDITLVIGTHSLI-----AEK-------VEFSALRLAIVDEQQRF 650 (742)
Q Consensus 613 ~~l~~G~~~IVVgT~~~l-----~~~-------v~~~~l~LVIIDEaHrf 650 (742)
. +||+-||.+-+ .|. .....+.++||||+|..
T Consensus 214 ~------~DItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSi 257 (822)
T 3jux_A 214 L------CDVTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSV 257 (822)
T ss_dssp H------SSEEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHH
T ss_pred c------CCCEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccce
Confidence 4 69999998865 221 12356889999999963
No 81
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.65 E-value=3.5e-08 Score=115.05 Aligned_cols=86 Identities=21% Similarity=0.286 Sum_probs=71.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHh-cCCeEEEEcccHHHHHHHHHHHHHhhhhcc
Q 045263 510 YSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIG-SGYQAAFMVPTELLATQHYEHLLKLLDNME 588 (742)
Q Consensus 510 f~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~-~g~qvlilaPT~~La~Q~~~~l~~~l~~~~ 588 (742)
|++++.|.+.+.++.+.+..+. +.++++|||+|||++|++|++..+. .+.+++|++||++|+.|+.+++..+....+
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~~--~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~~el~~l~~~~~ 79 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKSY--GVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRSLSSTMK 79 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHSS--EEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHHHHHHHcCC--CEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHHHhhccC
Confidence 6899999999999988775554 8999999999999999999988764 478999999999999999999988876544
Q ss_pred CCCCCcEEEEEeCC
Q 045263 589 EDKHKPKIALLTGS 602 (742)
Q Consensus 589 ~~~~~i~V~ll~G~ 602 (742)
+++..+.|+
T Consensus 80 -----~~~~~l~gr 88 (620)
T 4a15_A 80 -----IRAIPMQGR 88 (620)
T ss_dssp -----CCEEECCCH
T ss_pred -----eEEEEEECC
Confidence 677777764
No 82
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.22 E-value=8.9e-06 Score=95.16 Aligned_cols=68 Identities=19% Similarity=0.263 Sum_probs=59.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHh
Q 045263 511 SLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKL 583 (742)
Q Consensus 511 ~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT~~La~Q~~~~l~~~ 583 (742)
.|++.|++|+..++.. . .-.||+||+|||||.+.+..+.+.+..|.++|+++||..=++++.+++...
T Consensus 189 ~LN~~Q~~AV~~al~~--~---~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKEAVLFALSQ--K---ELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHHHHHHHHHC--S---SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHhcC--C---CceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhc
Confidence 5999999999998862 1 246999999999999999999999999999999999999999998887653
No 83
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=98.09 E-value=1.4e-05 Score=93.79 Aligned_cols=111 Identities=22% Similarity=0.234 Sum_probs=83.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhhhhcc
Q 045263 509 PYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNME 588 (742)
Q Consensus 509 pf~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT~~La~Q~~~~l~~~l~~~~ 588 (742)
+|+|++.|..++..+.+++..+. ...++.|.||||||.++...+... +..+|||+|+..+|.|+++.|+.+++.
T Consensus 6 ~~~~~~~q~~ai~~l~~~~~~~~-~~~~l~g~tgs~kt~~~a~~~~~~---~~~~lvv~~~~~~A~ql~~el~~~~~~-- 79 (664)
T 1c4o_A 6 GPSPKGDQPKAIAGLVEALRDGE-RFVTLLGATGTGKTVTMAKVIEAL---GRPALVLAPNKILAAQLAAEFRELFPE-- 79 (664)
T ss_dssp SCCCCTTHHHHHHHHHHHHHTTC-SEEEEEECTTSCHHHHHHHHHHHH---TCCEEEEESSHHHHHHHHHHHHHHCTT--
T ss_pred CCCCCCCChHHHHHHHHHHhcCC-CcEEEEcCCCcHHHHHHHHHHHHh---CCCEEEEecCHHHHHHHHHHHHHHCCC--
Confidence 68999999999999988876553 235788999999999887655432 678999999999999999999999753
Q ss_pred CCCCCcEEEEEe--------------------CCCC-----hHHHHHHHHHhhcCCccEEEechHHH
Q 045263 589 EDKHKPKIALLT--------------------GSTP-----VKQSRMIRKDLQTGDITLVIGTHSLI 630 (742)
Q Consensus 589 ~~~~~i~V~ll~--------------------G~~~-----~~er~~i~~~l~~G~~~IVVgT~~~l 630 (742)
..|..+. ...+ ...|...+..+.++...|||+|.+.+
T Consensus 80 -----~~V~~fps~yd~~~pe~~~~~~d~~~~~~~~~~~~i~~~R~~~l~~L~~~~~~ivV~s~~~l 141 (664)
T 1c4o_A 80 -----NAVEYFISYYDYYQPEAYVPGKDLYIEKDASINPEIERLRHSTTRSLLTRRDVIVVASVSAI 141 (664)
T ss_dssp -----SEEEECCCGGGTSCCCEEEGGGTEEECCCCSCCHHHHHHHHHHHHHHHHCSCEEEEEEGGGC
T ss_pred -----CeEEEcCchhhccCcccccchhhhhhhhhcccCHHHHHHHHHHHHHHHhCCCeEEEecHHHH
Confidence 2344433 2221 34566677777777677999987755
No 84
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.06 E-value=1.4e-05 Score=89.53 Aligned_cols=73 Identities=18% Similarity=0.243 Sum_probs=57.9
Q ss_pred hCCCC-CCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcCC-eEEEEcccHHHHHHHHHHH
Q 045263 507 ALPYS-LTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGY-QAAFMVPTELLATQHYEHL 580 (742)
Q Consensus 507 ~lpf~-Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~-qvlilaPT~~La~Q~~~~l 580 (742)
-++|. |++.|++|+..+...+..+. ...+|.|+.|||||.+....+......|. ++++++||...+..+.+.+
T Consensus 20 p~~~~~Ln~~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 20 HMTFDDLTEGQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp -CCSSCCCHHHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHH
T ss_pred CCccccCCHHHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhh
Confidence 45675 99999999999987655443 28899999999999988777766667776 8999999988877665544
No 85
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.04 E-value=4.5e-06 Score=97.07 Aligned_cols=70 Identities=24% Similarity=0.247 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHH--HHHHHHHHH--hcCCeEEEEcccHHHHHHHHHHHHHhhhhc
Q 045263 512 LTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVV--AFLACMEVI--GSGYQAAFMVPTELLATQHYEHLLKLLDNM 587 (742)
Q Consensus 512 Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~v--al~ail~~l--~~g~qvlilaPT~~La~Q~~~~l~~~l~~~ 587 (742)
.++.|+.|+..++.+ ..++++|++|||||.+ ++++.+..+ ..+.++++++||..+|.|+.+.+......+
T Consensus 150 ~~~~Q~~Ai~~~l~~------~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l 223 (608)
T 1w36_D 150 EINWQKVAAAVALTR------RISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQL 223 (608)
T ss_dssp SCCHHHHHHHHHHTB------SEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHS
T ss_pred CCHHHHHHHHHHhcC------CCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcC
Confidence 378999999998853 3789999999999955 455555433 346799999999999999998887765544
No 86
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.02 E-value=2.2e-05 Score=91.52 Aligned_cols=67 Identities=22% Similarity=0.277 Sum_probs=56.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHh-cCCeEEEEcccHHHHHHHHHHHHHh
Q 045263 511 SLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIG-SGYQAAFMVPTELLATQHYEHLLKL 583 (742)
Q Consensus 511 ~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~-~g~qvlilaPT~~La~Q~~~~l~~~ 583 (742)
.|++.|.+|+..++.. ...+|+||+|||||.+....+...+. .+.++++++||..-+.++.+.+.+.
T Consensus 180 ~ln~~Q~~av~~~l~~------~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 180 DLNHSQVYAVKTVLQR------PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp CCCHHHHHHHHHHHTC------SEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHhcC------CCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 5999999999988741 25799999999999998777776665 5789999999999999999887653
No 87
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.99 E-value=2.2e-05 Score=93.98 Aligned_cols=67 Identities=25% Similarity=0.283 Sum_probs=56.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHh-cCCeEEEEcccHHHHHHHHHHHHHh
Q 045263 511 SLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIG-SGYQAAFMVPTELLATQHYEHLLKL 583 (742)
Q Consensus 511 ~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~-~g~qvlilaPT~~La~Q~~~~l~~~ 583 (742)
.|++.|++|+..++.. ...+|+||+|||||.+....+...+. .+.++++++||..-+.++.+++.+.
T Consensus 360 ~Ln~~Q~~Av~~~l~~------~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 360 QLNSSQSNAVSHVLQR------PLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCHHHHHHHHHHTTC------SEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHhcC------CCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 5999999999988641 25799999999999998777766655 5889999999999999999998764
No 88
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.89 E-value=4.4e-05 Score=91.38 Aligned_cols=68 Identities=22% Similarity=0.258 Sum_probs=56.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHh-cCCeEEEEcccHHHHHHHHHHHHHh
Q 045263 510 YSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIG-SGYQAAFMVPTELLATQHYEHLLKL 583 (742)
Q Consensus 510 f~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~-~g~qvlilaPT~~La~Q~~~~l~~~ 583 (742)
..|++.|++|+..++.. ...+|+||+|+|||.+....+...+. .+.++++++||..-+.++.+.+.+.
T Consensus 355 ~~Ln~~Q~~Av~~~l~~------~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 355 PDLNHSQVYAVKTVLQR------PLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCCCHHHHHHHHHHHTS------SEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred cCCCHHHHHHHHHhccC------CeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 35999999999988752 25799999999999988777666665 5789999999999999998887653
No 89
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=97.81 E-value=7.4e-05 Score=87.67 Aligned_cols=112 Identities=20% Similarity=0.221 Sum_probs=84.0
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhhhhc
Q 045263 508 LPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNM 587 (742)
Q Consensus 508 lpf~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT~~La~Q~~~~l~~~l~~~ 587 (742)
-+|+|+.+|..++..+.+++..+. ...++.|.||||||+++...+... +..+||++|+..+|.|+++.|+.+++.
T Consensus 9 ~~~~p~~~Q~~~i~~l~~~~~~~~-~~~~l~g~~gs~k~~~~a~~~~~~---~~~~lvv~~~~~~A~~l~~el~~~~~~- 83 (661)
T 2d7d_A 9 SKYQPQGDQPKAIEKLVKGIQEGK-KHQTLLGATGTGKTFTVSNLIKEV---NKPTLVIAHNKTLAGQLYSEFKEFFPN- 83 (661)
T ss_dssp CSCCCCTTHHHHHHHHHHHHHTTC-SEEEEEECTTSCHHHHHHHHHHHH---CCCEEEECSSHHHHHHHHHHHHHHCTT-
T ss_pred cCCCCCCCCHHHHHHHHHHHhcCC-CcEEEECcCCcHHHHHHHHHHHHh---CCCEEEEECCHHHHHHHHHHHHHHcCC-
Confidence 378999999999999988876553 235788999999998876554332 668999999999999999999999753
Q ss_pred cCCCCCcEEEEEeC--------------------C-----CChHHHHHHHHHhhcCCccEEEechHHH
Q 045263 588 EEDKHKPKIALLTG--------------------S-----TPVKQSRMIRKDLQTGDITLVIGTHSLI 630 (742)
Q Consensus 588 ~~~~~~i~V~ll~G--------------------~-----~~~~er~~i~~~l~~G~~~IVVgT~~~l 630 (742)
..|..+-+ . .-..+|...+..+.++...|||+|.+.+
T Consensus 84 ------~~v~~fps~yd~~~pe~~~~~~d~y~~~~~~~~~~i~~~Rl~~l~~L~~~~~~ivV~sv~al 145 (661)
T 2d7d_A 84 ------NAVEYFVSYYDYYQPEAYVPQTDTFIEKDASINDEIDKLRHSATSALFERRDVIIIASVSCI 145 (661)
T ss_dssp ------SEEEEECCCEEEEECCEEETTTTEEECCEEEECHHHHHHHHHHHHHHHHCSCEEEEECGGGG
T ss_pred ------CcEEEccccccccCccccCCcchhhhhhhcccCHHHHHHHHHHHHHHHhCCCeEEEecHHHH
Confidence 24544431 1 1135666777777777667999998765
No 90
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.80 E-value=7.5e-05 Score=86.22 Aligned_cols=66 Identities=20% Similarity=0.168 Sum_probs=54.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHH
Q 045263 508 LPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEH 579 (742)
Q Consensus 508 lpf~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT~~La~Q~~~~ 579 (742)
+++.|++.|++|+..+... ...+|+|++|||||.+....+......|.++++++||...+..+.+.
T Consensus 186 ~~~~L~~~Q~~Av~~~~~~------~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~ 251 (574)
T 3e1s_A 186 ARKGLSEEQASVLDQLAGH------RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEV 251 (574)
T ss_dssp TTTTCCHHHHHHHHHHTTC------SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHhC------CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhh
Confidence 3889999999999988742 37899999999999887666665667799999999999888776653
No 91
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=96.62 E-value=0.014 Score=55.50 Aligned_cols=80 Identities=13% Similarity=0.157 Sum_probs=68.3
Q ss_pred hcCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhhccccC
Q 045263 558 GSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFS 637 (742)
Q Consensus 558 ~~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~~v~~~ 637 (742)
..+.++++.++++.-++.+++.+... + +.+..+||+++..+|..+++.+.+|+.+|+|+| ..+...+.+.
T Consensus 33 ~~~~~~lVF~~~~~~~~~l~~~L~~~----~-----~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T-~~~~~Gld~~ 102 (163)
T 2hjv_A 33 ENPDSCIIFCRTKEHVNQLTDELDDL----G-----YPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVAT-DVAARGIDIE 102 (163)
T ss_dssp HCCSSEEEECSSHHHHHHHHHHHHHT----T-----CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEC-GGGTTTCCCS
T ss_pred cCCCcEEEEECCHHHHHHHHHHHHHc----C-----CcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEC-ChhhcCCchh
Confidence 35678999999999999888887763 3 689999999999999999999999999999999 4555678888
Q ss_pred CccEEEEeCC
Q 045263 638 ALRLAIVDEQ 647 (742)
Q Consensus 638 ~l~LVIIDEa 647 (742)
++++||.-+.
T Consensus 103 ~~~~Vi~~~~ 112 (163)
T 2hjv_A 103 NISLVINYDL 112 (163)
T ss_dssp CCSEEEESSC
T ss_pred cCCEEEEeCC
Confidence 9999987544
No 92
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.60 E-value=0.004 Score=72.03 Aligned_cols=67 Identities=22% Similarity=0.219 Sum_probs=57.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcC----CeEEEEcccHHHHHHHHHHHHHhhh
Q 045263 511 SLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSG----YQAAFMVPTELLATQHYEHLLKLLD 585 (742)
Q Consensus 511 ~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g----~qvlilaPT~~La~Q~~~~l~~~l~ 585 (742)
.|++.|++|+.. . ....+|.|+.|||||.+.+.-+...+..+ .+++++++|+..+.++.+++.+.+.
T Consensus 9 ~Ln~~Q~~av~~------~--~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 9 SLNDKQREAVAA------P--RSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp TCCHHHHHHHTC------C--SSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHhC------C--CCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 599999999962 1 13679999999999999988888888763 5899999999999999999988764
No 93
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=96.55 E-value=0.019 Score=51.76 Aligned_cols=81 Identities=15% Similarity=0.163 Sum_probs=52.6
Q ss_pred ccccCCCCCeEEEEEEEEEeeccc---cCCC--ceEEEEEEeeeeccCCCCCCcceeeecCCCceeEEEEEeeeeecccc
Q 045263 250 AQIDLDDGQYFIFIGEIISSRGMK---AGCS--FSFLEVIVGCEIADTETTSGDEVVNIDSGQKKKIYLHLKKFFRGTRF 324 (742)
Q Consensus 250 ~i~~l~~Ge~vti~G~V~~~~~~~---~~~~--~~~l~v~v~~~~~~~~~~~~~~~~~~~~g~~~~i~l~~~~ff~~~~F 324 (742)
++.++.+|+.+++.|+|.+....+ .+++ ..++.+.+. |++| .|.+ +.|
T Consensus 9 ~I~~L~~g~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~----------------D~TG---~I~~--------t~w 61 (115)
T 2k50_A 9 TISKLEEGAETPVTGRVMKISSPRTFTTRKGREGKLANVIIA----------------DDTG---ELRA--------VFW 61 (115)
T ss_dssp CTTTCCTTCEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEE----------------ETTE---EEEE--------EEE
T ss_pred EHHHCCCCCEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEE----------------eCCC---eEEE--------EEe
Confidence 578999999999999999883333 3444 566666665 3444 2432 223
Q ss_pred cccchhHhhhccccCCcEEEEEEEE--eecCCCceeEEee
Q 045263 325 TSIPFLKSIEGKHKVGEFVCVSGKV--RAMRSNNHYEMRE 362 (742)
Q Consensus 325 fn~pfl~~~~~~l~~G~~v~v~GKv--~~~~~~~~~~m~~ 362 (742)
..+.+. ...|++|+.|.|.|++ ..|+| .+|+..
T Consensus 62 ~~~~~~---~~~l~~G~vv~i~g~~v~~~f~g--~~qL~~ 96 (115)
T 2k50_A 62 TENIKL---LKKFREGDVIRIKDVNIRGGFGG--RKEAHL 96 (115)
T ss_dssp TTGGGG---GGTCCTTSEEEEEEEEECCCSSS--SCEEEE
T ss_pred Cchhhh---hhcCCCCCEEEEEeeEEccccCC--eEEEEE
Confidence 222232 2579999999999999 54654 455543
No 94
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.50 E-value=0.017 Score=63.41 Aligned_cols=124 Identities=9% Similarity=0.064 Sum_probs=78.6
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHH-HHh-cCCeEEEEcccHHHHHHHHHHHHHhhh
Q 045263 508 LPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACME-VIG-SGYQAAFMVPTELLATQHYEHLLKLLD 585 (742)
Q Consensus 508 lpf~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~-~l~-~g~qvlilaPT~~La~Q~~~~l~~~l~ 585 (742)
.||.|+|+|+..+..+.. ...+++..+-+.|||.++...++. ++. .|.++++++||...|..+++.+..++.
T Consensus 160 ~p~~L~p~Qk~il~~l~~------~R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi~ 233 (385)
T 2o0j_A 160 IKVQLRDYQRDMLKIMSS------KRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIE 233 (385)
T ss_dssp EECCCCHHHHHHHHHHHH------SSEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHhhcc------CcEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHH
Confidence 568999999999987642 124799999999999986655554 333 357899999999999999988888876
Q ss_pred hccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEe-chHHHhhccccCCccEEEEeCCcccc
Q 045263 586 NMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIG-THSLIAEKVEFSALRLAIVDEQQRFG 651 (742)
Q Consensus 586 ~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVg-T~~~l~~~v~~~~l~LVIIDEaHrfG 651 (742)
..+.... ..+.- .+.... .+.+|..-..++ +++.+. -.+..++|+||+|.+.
T Consensus 234 ~~P~ll~-~~~~~-~~~~~I--------~f~nGs~i~~lsa~~~slr----G~~~~~viiDE~a~~~ 286 (385)
T 2o0j_A 234 LLPDFLQ-PGIVE-WNKGSI--------ELDNGSSIGAYASSPDAVR----GNSFAMIYIEDCAFIP 286 (385)
T ss_dssp HSCTTTS-CCEEE-ECSSEE--------EETTSCEEEEEECSHHHHH----TSCCSEEEEESGGGST
T ss_pred hChHhhh-hhhcc-CCccEE--------EeCCCCEEEEEECCCCCcc----CCCCCEEEechhhhcC
Confidence 5431000 11111 111000 122442222233 344442 2456899999999874
No 95
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=96.45 E-value=0.026 Score=53.63 Aligned_cols=91 Identities=18% Similarity=0.201 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEE
Q 045263 545 KTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVI 624 (742)
Q Consensus 545 KT~val~ail~~l~~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVV 624 (742)
|... +..++.. ..+.++++.++++.-++.+++.+... + +.+..+||+++..+|..+++.+++|+..|+|
T Consensus 17 K~~~-l~~ll~~-~~~~~~lVF~~~~~~~~~l~~~L~~~----~-----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv 85 (165)
T 1fuk_A 17 KYEC-LTDLYDS-ISVTQAVIFCNTRRKVEELTTKLRND----K-----FTVSAIYSDLPQQERDTIMKEFRSGSSRILI 85 (165)
T ss_dssp HHHH-HHHHHHH-TTCSCEEEEESSHHHHHHHHHHHHHT----T-----CCEEEECTTSCHHHHHHHHHHHHTTSCSEEE
T ss_pred HHHH-HHHHHHh-CCCCCEEEEECCHHHHHHHHHHHHHc----C-----CCEEEEECCCCHHHHHHHHHHHHcCCCEEEE
Confidence 5443 3333332 24678999999999998888877763 3 6789999999999999999999999999999
Q ss_pred echHHHhhccccCCccEEEEeCC
Q 045263 625 GTHSLIAEKVEFSALRLAIVDEQ 647 (742)
Q Consensus 625 gT~~~l~~~v~~~~l~LVIIDEa 647 (742)
+|. .+...+.+.++.+||.-+.
T Consensus 86 ~T~-~~~~G~d~~~~~~Vi~~~~ 107 (165)
T 1fuk_A 86 STD-LLARGIDVQQVSLVINYDL 107 (165)
T ss_dssp EEG-GGTTTCCCCSCSEEEESSC
T ss_pred EcC-hhhcCCCcccCCEEEEeCC
Confidence 994 4556788889999887443
No 96
>3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A
Probab=96.39 E-value=0.018 Score=50.68 Aligned_cols=73 Identities=18% Similarity=0.115 Sum_probs=47.0
Q ss_pred ccccCCCCCeEEEEEEEEEeecccc--C-CC--ceEEEEEEeeeeccCCCCCCcceeeecCCCceeEEEEEeeeeecccc
Q 045263 250 AQIDLDDGQYFIFIGEIISSRGMKA--G-CS--FSFLEVIVGCEIADTETTSGDEVVNIDSGQKKKIYLHLKKFFRGTRF 324 (742)
Q Consensus 250 ~i~~l~~Ge~vti~G~V~~~~~~~~--~-~~--~~~l~v~v~~~~~~~~~~~~~~~~~~~~g~~~~i~l~~~~ff~~~~F 324 (742)
++.++.+|+.+++.|+|++....+. + .+ ..+.++.+. |++|. |.+. .|
T Consensus 4 kI~dl~~g~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~----------------DeTG~---I~~t--------lW 56 (97)
T 3e0e_A 4 KISELMPNLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLK----------------DDTGS---IRGT--------LW 56 (97)
T ss_dssp CGGGCCTTEEEEEEEEEEEECCCEEEC----CCEEEEEEEEE----------------ETTEE---EEEE--------EE
T ss_pred EHHHCCCCCcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEE----------------CCCCc---EEEE--------EE
Confidence 5789999999999999998854332 1 12 234445444 44552 4432 35
Q ss_pred cccchhHhhhccccCCcEEEEEEEEeecCC
Q 045263 325 TSIPFLKSIEGKHKVGEFVCVSGKVRAMRS 354 (742)
Q Consensus 325 fn~pfl~~~~~~l~~G~~v~v~GKv~~~~~ 354 (742)
+++..+ .+++|+.|.|.|+++.+.+
T Consensus 57 ~~~~~~-----~i~~Gdvv~i~g~v~~~~~ 81 (97)
T 3e0e_A 57 NELADF-----EVKKGDIAEVSGYVKQGYS 81 (97)
T ss_dssp GGGGGC-----CCCTTCEEEEEEEEEEC--
T ss_pred CCcccc-----ccCCCCEEEEEEEEEEcCC
Confidence 454432 5899999999999987754
No 97
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=96.36 E-value=0.023 Score=55.72 Aligned_cols=78 Identities=12% Similarity=0.159 Sum_probs=66.9
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhhccccCC
Q 045263 559 SGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSA 638 (742)
Q Consensus 559 ~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~~v~~~~ 638 (742)
.+.+++|.++++.-++.+++.|... + +.+..++|+++..+|..+++.+++|+.+|+|+| ..+...+.+.+
T Consensus 53 ~~~~~lVF~~~~~~~~~l~~~L~~~----g-----~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT-~~~~~Gldi~~ 122 (191)
T 2p6n_A 53 TPPPVLIFAEKKADVDAIHEYLLLK----G-----VEAVAIHGGKDQEERTKAIEAFREGKKDVLVAT-DVASKGLDFPA 122 (191)
T ss_dssp SCSCEEEECSCHHHHHHHHHHHHHH----T-----CCEEEECTTSCHHHHHHHHHHHHHTSCSEEEEC-HHHHTTCCCCC
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc----C-----CcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEc-CchhcCCCccc
Confidence 3678999999999999988887764 3 678999999999999999999999999999999 44556788889
Q ss_pred ccEEEEeC
Q 045263 639 LRLAIVDE 646 (742)
Q Consensus 639 l~LVIIDE 646 (742)
+.+||.-+
T Consensus 123 v~~VI~~d 130 (191)
T 2p6n_A 123 IQHVINYD 130 (191)
T ss_dssp CSEEEESS
T ss_pred CCEEEEeC
Confidence 99988744
No 98
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=96.33 E-value=0.018 Score=67.57 Aligned_cols=102 Identities=15% Similarity=0.185 Sum_probs=82.8
Q ss_pred CCChHHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCc
Q 045263 541 VGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDI 620 (742)
Q Consensus 541 TGSGKT~val~ail~~l~~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~ 620 (742)
.-.|+....+..+......|.+++|.++|+.-++.+.+.|.+. + +++..+||+.+..+|..+++.+.+|..
T Consensus 420 ~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~----g-----i~~~~lh~~~~~~~R~~~~~~f~~g~~ 490 (664)
T 1c4o_A 420 PTENQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEH----G-----IRARYLHHELDAFKRQALIRDLRLGHY 490 (664)
T ss_dssp CSTTHHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHT----T-----CCEEEECTTCCHHHHHHHHHHHHTTSC
T ss_pred cccchHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhc----C-----CCceeecCCCCHHHHHHHHHHhhcCCc
Confidence 3445554444445555567899999999999998888777663 4 678899999999999999999999999
Q ss_pred cEEEechHHHhhccccCCccEEEEeCCccccc
Q 045263 621 TLVIGTHSLIAEKVEFSALRLAIVDEQQRFGV 652 (742)
Q Consensus 621 ~IVVgT~~~l~~~v~~~~l~LVIIDEaHrfG~ 652 (742)
+|+||| ..+...+.+.++++||+=+++.+|+
T Consensus 491 ~VLvaT-~~l~~GlDip~v~lVI~~d~d~~G~ 521 (664)
T 1c4o_A 491 DCLVGI-NLLREGLDIPEVSLVAILDADKEGF 521 (664)
T ss_dssp SEEEES-CCCCTTCCCTTEEEEEETTTTSCSG
T ss_pred eEEEcc-ChhhcCccCCCCCEEEEeCCcccCC
Confidence 999999 4456688899999999999988775
No 99
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=96.25 E-value=0.017 Score=55.48 Aligned_cols=79 Identities=18% Similarity=0.214 Sum_probs=66.4
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhhccccCC
Q 045263 559 SGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSA 638 (742)
Q Consensus 559 ~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~~v~~~~ 638 (742)
.+.+++|.++++..+..+++.+... + ..+..+||+++..+|..+++.+++|..+|+|+|. .+...+.+.+
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~----~-----~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~-~~~~Gid~~~ 102 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQD----G-----HQVSLLSGELTVEQRASIIQRFRDGKEKVLITTN-VCARGIDVKQ 102 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTT----T-----CCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECC-SCCTTTCCTT
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHc----C-----CcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEec-chhcCCCccc
Confidence 3578999999999998888777653 3 6899999999999999999999999999999994 4455778889
Q ss_pred ccEEEEeCC
Q 045263 639 LRLAIVDEQ 647 (742)
Q Consensus 639 l~LVIIDEa 647 (742)
+.+||.-+.
T Consensus 103 ~~~Vi~~d~ 111 (175)
T 2rb4_A 103 VTIVVNFDL 111 (175)
T ss_dssp EEEEEESSC
T ss_pred CCEEEEeCC
Confidence 999986443
No 100
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=96.23 E-value=0.011 Score=57.69 Aligned_cols=94 Identities=14% Similarity=0.173 Sum_probs=61.5
Q ss_pred CChHHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCcc
Q 045263 542 GCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDIT 621 (742)
Q Consensus 542 GSGKT~val~ail~~l~~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~ 621 (742)
.+.|.. ++.-++.....+.+++|.++++.-+..+++.+... + +.+..++|+++..+|..+++.+.+|+.+
T Consensus 29 ~~~K~~-~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~----g-----~~~~~lhg~~~~~~r~~~~~~f~~g~~~ 98 (185)
T 2jgn_A 29 ESDKRS-FLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE----G-----YACTSIHGDRSQRDREEALHQFRSGKSP 98 (185)
T ss_dssp GGGHHH-HHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHT----T-----CCEEEEC--------CHHHHHHHHTSSS
T ss_pred cHHHHH-HHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHc----C-----CceEEEeCCCCHHHHHHHHHHHHcCCCe
Confidence 456654 33334433335789999999999998888877663 3 6899999999999999999999999999
Q ss_pred EEEechHHHhhccccCCccEEEEeC
Q 045263 622 LVIGTHSLIAEKVEFSALRLAIVDE 646 (742)
Q Consensus 622 IVVgT~~~l~~~v~~~~l~LVIIDE 646 (742)
|+|+|. .+...+.+.++.+||.-+
T Consensus 99 vLvaT~-~~~~Gldi~~~~~VI~~d 122 (185)
T 2jgn_A 99 ILVATA-VAARGLDISNVKHVINFD 122 (185)
T ss_dssp EEEEEC-------CCCSBSEEEESS
T ss_pred EEEEcC-hhhcCCCcccCCEEEEeC
Confidence 999994 455577888999888743
No 101
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=96.20 E-value=0.024 Score=56.42 Aligned_cols=92 Identities=15% Similarity=0.197 Sum_probs=72.4
Q ss_pred CCChHHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCc
Q 045263 541 VGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDI 620 (742)
Q Consensus 541 TGSGKT~val~ail~~l~~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~ 620 (742)
.-..|..+... ++. ...+.+++|.++|+.-++.+++.+.+. + +.+..+||+++..+|..+++.+.+|..
T Consensus 14 ~~~~k~~~l~~-ll~-~~~~~~~lVF~~~~~~~~~l~~~L~~~----~-----~~~~~lhg~~~~~~r~~~~~~f~~g~~ 82 (212)
T 3eaq_A 14 PVRGRLEVLSD-LLY-VASPDRAMVFTRTKAETEEIAQGLLRL----G-----HPAQALHGDLSQGERERVLGAFRQGEV 82 (212)
T ss_dssp CTTSHHHHHHH-HHH-HHCCSCEEEECSSHHHHHHHHHHHHHH----T-----CCEEEECSSSCHHHHHHHHHHHHSSSC
T ss_pred CHHHHHHHHHH-HHH-hCCCCeEEEEeCCHHHHHHHHHHHHHc----C-----CCEEEEECCCCHHHHHHHHHHHHCCCC
Confidence 34556543332 222 345789999999999999888887764 3 678999999999999999999999999
Q ss_pred cEEEechHHHhhccccCCccEEEE
Q 045263 621 TLVIGTHSLIAEKVEFSALRLAIV 644 (742)
Q Consensus 621 ~IVVgT~~~l~~~v~~~~l~LVII 644 (742)
+|+|+|. .+...+.+.++.+||.
T Consensus 83 ~vlvaT~-~~~~Gidi~~v~~Vi~ 105 (212)
T 3eaq_A 83 RVLVATD-VAARGLDIPQVDLVVH 105 (212)
T ss_dssp CEEEECT-TTTCSSSCCCBSEEEE
T ss_pred eEEEecC-hhhcCCCCccCcEEEE
Confidence 9999994 4455788889999885
No 102
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=96.20 E-value=0.022 Score=66.72 Aligned_cols=102 Identities=15% Similarity=0.174 Sum_probs=82.2
Q ss_pred CCChHHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCc
Q 045263 541 VGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDI 620 (742)
Q Consensus 541 TGSGKT~val~ail~~l~~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~ 620 (742)
.-.|+....+..+......|.+++|.++|+.-++.+.+.|.+. + +++..+||+.+..+|..+++.+.+|..
T Consensus 426 ~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~----g-----i~~~~lh~~~~~~~R~~~l~~f~~g~~ 496 (661)
T 2d7d_A 426 PIEGQIDDLIGEIQARIERNERVLVTTLTKKMSEDLTDYLKEI----G-----IKVNYLHSEIKTLERIEIIRDLRLGKY 496 (661)
T ss_dssp CSTTHHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHT----T-----CCEEEECTTCCHHHHHHHHHHHHHTSC
T ss_pred cccchHHHHHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHhc----C-----CCeEEEeCCCCHHHHHHHHHHHhcCCe
Confidence 3345544444444555567899999999999998888777663 4 678899999999999999999999999
Q ss_pred cEEEechHHHhhccccCCccEEEEeCCccccc
Q 045263 621 TLVIGTHSLIAEKVEFSALRLAIVDEQQRFGV 652 (742)
Q Consensus 621 ~IVVgT~~~l~~~v~~~~l~LVIIDEaHrfG~ 652 (742)
+|+|||. .+...+.+.++++||+-+.+.+|+
T Consensus 497 ~VLVaT~-~l~~GlDip~v~lVi~~d~d~~G~ 527 (661)
T 2d7d_A 497 DVLVGIN-LLREGLDIPEVSLVAILDADKEGF 527 (661)
T ss_dssp SEEEESC-CCSTTCCCTTEEEEEETTTTCCTT
T ss_pred EEEEecc-hhhCCcccCCCCEEEEeCcccccC
Confidence 9999996 345678889999999999998875
No 103
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=96.14 E-value=0.017 Score=55.48 Aligned_cols=80 Identities=9% Similarity=0.084 Sum_probs=67.5
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhhccccCC
Q 045263 559 SGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSA 638 (742)
Q Consensus 559 ~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~~v~~~~ 638 (742)
.+.+++|.++++.-+..+++.+... + +.+..+||+++..+|..+++.+.+|+..|+|+| ..+...+.+.+
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~----~-----~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT-~~~~~Gldi~~ 99 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQ----N-----FPAIAIHRGMPQEERLSRYQQFKDFQRRILVAT-NLFGRGMDIER 99 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHT----T-----CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEES-SCCSTTCCGGG
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhc----C-----CCEEEEECCCCHHHHHHHHHHHHCCCCcEEEEC-CchhcCcchhh
Confidence 4678999999999999888887763 3 678999999999999999999999999999999 44555778888
Q ss_pred ccEEEEeCCc
Q 045263 639 LRLAIVDEQQ 648 (742)
Q Consensus 639 l~LVIIDEaH 648 (742)
+.+||.-+..
T Consensus 100 ~~~Vi~~d~p 109 (172)
T 1t5i_A 100 VNIAFNYDMP 109 (172)
T ss_dssp CSEEEESSCC
T ss_pred CCEEEEECCC
Confidence 9998874443
No 104
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.13 E-value=0.032 Score=64.36 Aligned_cols=75 Identities=9% Similarity=0.016 Sum_probs=58.4
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHH-HHHhc-CCeEEEEcccHHHHHHHHHHHHHhhh
Q 045263 508 LPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACM-EVIGS-GYQAAFMVPTELLATQHYEHLLKLLD 585 (742)
Q Consensus 508 lpf~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail-~~l~~-g~qvlilaPT~~La~Q~~~~l~~~l~ 585 (742)
.||.|+++|+..+..+.. ...+++.++-|+|||.+....++ .++.. +.++++++||...|..+++.++.++.
T Consensus 160 ~~~~l~p~Q~~i~~~l~~------~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~ 233 (592)
T 3cpe_A 160 IKVQLRDYQRDMLKIMSS------KRMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIE 233 (592)
T ss_dssp BBCCCCHHHHHHHHHHHH------CSEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred ccCcCCHHHHHHHHhhcc------ccEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHH
Confidence 578999999999987722 12579999999999998654443 33333 45899999999999999998888876
Q ss_pred hcc
Q 045263 586 NME 588 (742)
Q Consensus 586 ~~~ 588 (742)
..+
T Consensus 234 ~~p 236 (592)
T 3cpe_A 234 LLP 236 (592)
T ss_dssp TSC
T ss_pred hCh
Confidence 543
No 105
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.08 E-value=0.013 Score=57.28 Aligned_cols=37 Identities=16% Similarity=0.054 Sum_probs=32.0
Q ss_pred ceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcccH
Q 045263 534 NRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTE 570 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT~ 570 (742)
-.++.|+.|+|||..++..+......|.+++++.|..
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~ 41 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKI 41 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 4689999999999998888888778899999998884
No 106
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.00 E-value=0.017 Score=61.56 Aligned_cols=45 Identities=9% Similarity=0.051 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCC-CceEEEccCCChHHHHHHHHHHHH
Q 045263 512 LTSSQLSAISEIIWDLKQPVP-MNRLLQGDVGCGKTVVAFLACMEV 556 (742)
Q Consensus 512 Lt~~Q~~aI~~I~~~~~~~~~-~~~LL~a~TGSGKT~val~ail~~ 556 (742)
+.|+|.+++..+...+..++. ...|+.||.|+|||.++...+...
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l 48 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYL 48 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHH
Confidence 468899999888877665543 348999999999998876655544
No 107
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=96.00 E-value=0.019 Score=71.52 Aligned_cols=98 Identities=17% Similarity=0.260 Sum_probs=83.3
Q ss_pred HHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHH
Q 045263 550 FLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSL 629 (742)
Q Consensus 550 l~ail~~l~~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~ 629 (742)
...++..+..|.++++++|+..-++.+++.+.+.++. .++..+||+++..++..++..+.+|+.+|+|+|. .
T Consensus 802 ~~~il~~l~~g~qvlvf~~~v~~~~~l~~~L~~~~p~-------~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~-v 873 (1151)
T 2eyq_A 802 REAILREILRGGQVYYLYNDVENIQKAAERLAELVPE-------ARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT-I 873 (1151)
T ss_dssp HHHHHHHHTTTCEEEEECCCSSCHHHHHHHHHHHCTT-------SCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESS-T
T ss_pred HHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHhCCC-------CeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECC-c
Confidence 3445555677999999999999999999998887643 5799999999999999999999999999999996 5
Q ss_pred HhhccccCCccEEEEeCCccccccch
Q 045263 630 IAEKVEFSALRLAIVDEQQRFGVVQR 655 (742)
Q Consensus 630 l~~~v~~~~l~LVIIDEaHrfG~~qr 655 (742)
+...+.+.++.+||+..+++++..+.
T Consensus 874 ~e~GiDip~v~~VIi~~~~~~~l~~l 899 (1151)
T 2eyq_A 874 IETGIDIPTANTIIIERADHFGLAQL 899 (1151)
T ss_dssp TGGGSCCTTEEEEEETTTTSSCHHHH
T ss_pred ceeeecccCCcEEEEeCCCCCCHHHH
Confidence 66688999999999999988876543
No 108
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=95.92 E-value=0.0061 Score=71.31 Aligned_cols=81 Identities=22% Similarity=0.164 Sum_probs=61.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhc-C---CeEEEEcccHHHHHHHHHHHHHhhhh
Q 045263 511 SLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGS-G---YQAAFMVPTELLATQHYEHLLKLLDN 586 (742)
Q Consensus 511 ~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~-g---~qvlilaPT~~La~Q~~~~l~~~l~~ 586 (742)
.||+.|++|+... ..+++|.|..|||||.+...-+...+.. | .++++++.|+..|.++.+++.+.+..
T Consensus 2 ~L~~~Q~~av~~~--------~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~ 73 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--------TGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGR 73 (673)
T ss_dssp CCCHHHHHHHHCC--------SSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCT
T ss_pred CCCHHHHHHHhCC--------CCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCc
Confidence 5899999999642 1367999999999999998887777765 3 68999999999999999999887643
Q ss_pred ccCCCCCcEEEEEeC
Q 045263 587 MEEDKHKPKIALLTG 601 (742)
Q Consensus 587 ~~~~~~~i~V~ll~G 601 (742)
.+ ...+.|..+|+
T Consensus 74 ~~--~~~~~v~Tfhs 86 (673)
T 1uaa_A 74 KE--ARGLMISTFHT 86 (673)
T ss_dssp TT--TTTSEEEEHHH
T ss_pred cc--ccCCEEEeHHH
Confidence 21 11245555544
No 109
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.90 E-value=0.014 Score=57.62 Aligned_cols=37 Identities=11% Similarity=0.039 Sum_probs=32.9
Q ss_pred ceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcccH
Q 045263 534 NRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTE 570 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT~ 570 (742)
-.++.|+.|||||..++..+.+....|.+++++-|..
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEI 46 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 5688999999999999988888888999999999984
No 110
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.69 E-value=0.023 Score=57.29 Aligned_cols=38 Identities=13% Similarity=0.011 Sum_probs=32.7
Q ss_pred ceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcccHH
Q 045263 534 NRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTEL 571 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT~~ 571 (742)
-.++.|+.|||||..++-.+.+....|.+++++-|...
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d 67 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID 67 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC--
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC
Confidence 44689999999999999999999899999999999863
No 111
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.46 E-value=0.042 Score=53.08 Aligned_cols=24 Identities=29% Similarity=0.285 Sum_probs=18.1
Q ss_pred CCCceEEEccCCChHHHHHHHHHH
Q 045263 531 VPMNRLLQGDVGCGKTVVAFLACM 554 (742)
Q Consensus 531 ~~~~~LL~a~TGSGKT~val~ail 554 (742)
...+++|.||+|+|||..+-..+.
T Consensus 37 ~~~~~ll~G~~G~GKT~l~~~l~~ 60 (226)
T 2chg_A 37 NIPHLLFSGPPGTGKTATAIALAR 60 (226)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 334699999999999987654443
No 112
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=95.44 E-value=0.019 Score=67.91 Aligned_cols=67 Identities=21% Similarity=0.182 Sum_probs=56.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhc-C---CeEEEEcccHHHHHHHHHHHHHhhh
Q 045263 511 SLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGS-G---YQAAFMVPTELLATQHYEHLLKLLD 585 (742)
Q Consensus 511 ~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~-g---~qvlilaPT~~La~Q~~~~l~~~l~ 585 (742)
.||+.|++|+... ...++|.|..|||||.+...-+...+.. | .++++++.|+..|.++.+++.+.+.
T Consensus 11 ~Ln~~Q~~av~~~--------~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~ 81 (724)
T 1pjr_A 11 HLNKEQQEAVRTT--------EGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLG 81 (724)
T ss_dssp TSCHHHHHHHHCC--------SSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHG
T ss_pred hCCHHHHHHHhCC--------CCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhc
Confidence 5999999998641 1367999999999999998888888764 3 5899999999999999999988764
No 113
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=95.43 E-value=0.049 Score=58.71 Aligned_cols=85 Identities=14% Similarity=0.201 Sum_probs=69.9
Q ss_pred HHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHH
Q 045263 550 FLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSL 629 (742)
Q Consensus 550 l~ail~~l~~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~ 629 (742)
+..++.....+.++++.++++.-++.+++.+.+. + +.+..+||+++..+|..+++.+.+|+.+|+|+|. .
T Consensus 266 l~~~l~~~~~~~~~lVf~~~~~~~~~l~~~L~~~----~-----~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~-~ 335 (417)
T 2i4i_A 266 LLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE----G-----YACTSIHGDRSQRDREEALHQFRSGKSPILVATA-V 335 (417)
T ss_dssp HHHHHHTCCTTCEEEEECSSHHHHHHHHHHHHHT----T-----CCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECH-H
T ss_pred HHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHC----C-----CCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECC-h
Confidence 3333333334789999999999999888887763 3 6799999999999999999999999999999996 4
Q ss_pred HhhccccCCccEEEE
Q 045263 630 IAEKVEFSALRLAIV 644 (742)
Q Consensus 630 l~~~v~~~~l~LVII 644 (742)
+...+.+.++++||.
T Consensus 336 ~~~Gidip~v~~Vi~ 350 (417)
T 2i4i_A 336 AARGLDISNVKHVIN 350 (417)
T ss_dssp HHTTSCCCCEEEEEE
T ss_pred hhcCCCcccCCEEEE
Confidence 556888999999886
No 114
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=95.35 E-value=0.084 Score=59.01 Aligned_cols=96 Identities=8% Similarity=0.171 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEE
Q 045263 545 KTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVI 624 (742)
Q Consensus 545 KT~val~ail~~l~~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVV 624 (742)
|.......+......+.+.++++....-+.. +.+.+...+ .++..++|+++..+|..+++.+.+|+.+|+|
T Consensus 332 ~~~~l~~~l~~~~~~~~~~~ivf~~~~~~~~----l~~~L~~~~-----~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv 402 (510)
T 2oca_A 332 RNKWIAKLAIKLAQKDENAFVMFKHVSHGKA----IFDLIKNEY-----DKVYYVSGEVDTETRNIMKTLAENGKGIIIV 402 (510)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEESSHHHHHH----HHHHHHTTC-----SSEEEESSSTTHHHHHHHHHHHHHCCSCEEE
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEecHHHHHH----HHHHHHHcC-----CCeEEEECCCCHHHHHHHHHHHhCCCCCEEE
Confidence 3333333344444556777777776554444 444444433 4789999999999999999999999999999
Q ss_pred echHHHhhccccCCccEEEEeCCcc
Q 045263 625 GTHSLIAEKVEFSALRLAIVDEQQR 649 (742)
Q Consensus 625 gT~~~l~~~v~~~~l~LVIIDEaHr 649 (742)
+|...+...+.+.++.+||+.....
T Consensus 403 ~T~~~~~~GiDip~v~~vi~~~~~~ 427 (510)
T 2oca_A 403 ASYGVFSTGISVKNLHHVVLAHGVK 427 (510)
T ss_dssp EEHHHHHHSCCCCSEEEEEESSCCC
T ss_pred EEcChhhcccccccCcEEEEeCCCC
Confidence 9988888899999999999988774
No 115
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=95.35 E-value=0.073 Score=57.67 Aligned_cols=98 Identities=14% Similarity=0.158 Sum_probs=75.5
Q ss_pred CCChHHHHHHHHHHHHH--hcCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeC--------CCChHHHHH
Q 045263 541 VGCGKTVVAFLACMEVI--GSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTG--------STPVKQSRM 610 (742)
Q Consensus 541 TGSGKT~val~ail~~l--~~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G--------~~~~~er~~ 610 (742)
..++|.....-.+.... ..+.+++|.++++.-++.+++.+.+. + +.+..++| +++..+|..
T Consensus 340 ~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~----~-----~~~~~~~g~~~~~~~~~~~~~~r~~ 410 (494)
T 1wp9_A 340 LDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKD----G-----IKAKRFVGQASKENDRGLSQREQKL 410 (494)
T ss_dssp CSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHT----T-----CCEEEECCSSCC-------CCHHHH
T ss_pred CCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHc----C-----CCcEEEeccccccccccCCHHHHHH
Confidence 45677665554444444 35789999999999988888877764 4 68899999 888899999
Q ss_pred HHHHhhcCCccEEEechHHHhhccccCCccEEEEeCCc
Q 045263 611 IRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQ 648 (742)
Q Consensus 611 i~~~l~~G~~~IVVgT~~~l~~~v~~~~l~LVIIDEaH 648 (742)
+++.+.+|+.+|+|+| ..+...+.+.++.+||+-+..
T Consensus 411 ~~~~F~~~~~~vLv~T-~~~~~Gldl~~~~~Vi~~d~~ 447 (494)
T 1wp9_A 411 ILDEFARGEFNVLVAT-SVGEEGLDVPEVDLVVFYEPV 447 (494)
T ss_dssp HHHHHHHTSCSEEEEC-GGGGGGGGSTTCCEEEESSCC
T ss_pred HHHHHhcCCceEEEEC-CccccCCCchhCCEEEEeCCC
Confidence 9999999999999999 456678889999999976554
No 116
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii}
Probab=95.34 E-value=0.091 Score=46.89 Aligned_cols=79 Identities=23% Similarity=0.260 Sum_probs=50.1
Q ss_pred ccccCCCCCeEEEEEEEEEeeccc---cCCC--ceEEEEEEeeeeccCCCCCCcceeeecCCCceeEEEEEeeeeecccc
Q 045263 250 AQIDLDDGQYFIFIGEIISSRGMK---AGCS--FSFLEVIVGCEIADTETTSGDEVVNIDSGQKKKIYLHLKKFFRGTRF 324 (742)
Q Consensus 250 ~i~~l~~Ge~vti~G~V~~~~~~~---~~~~--~~~l~v~v~~~~~~~~~~~~~~~~~~~~g~~~~i~l~~~~ff~~~~F 324 (742)
+|.++.+|..++|.|+|++....+ .+.+ ..+.++.+. |++|. |.+. .|
T Consensus 7 ~I~dL~~~~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~----------------D~TG~---Irvt--------lW 59 (105)
T 3dm3_A 7 NIGELSPGMTATFEGEVISALPIKEFKRADGSIGKLKSFIVR----------------DETGS---IRVT--------LW 59 (105)
T ss_dssp CGGGCCSSEEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEE----------------ETTEE---EEEE--------EE
T ss_pred EHHHCCCCCeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEE----------------CCCCc---EEEE--------EE
Confidence 678999999999999999875432 1122 223344443 44552 4432 25
Q ss_pred cccchhHhhhccccCCcEEEEEEEEeecCCCceeEEe
Q 045263 325 TSIPFLKSIEGKHKVGEFVCVSGKVRAMRSNNHYEMR 361 (742)
Q Consensus 325 fn~pfl~~~~~~l~~G~~v~v~GKv~~~~~~~~~~m~ 361 (742)
+++..+ .+.+|+.|.|.|+++...+ +.+++.
T Consensus 60 ~~~a~~-----~l~~Gdvv~i~g~vk~~~~-g~~eL~ 90 (105)
T 3dm3_A 60 DNLTDI-----DVGRGDYVRVRGYIREGYY-GGLECT 90 (105)
T ss_dssp GGGGGS-----CCCTTCEEEEEEEEEECTT-SSEEEE
T ss_pred Cccccc-----ccCCCCEEEEEEEEEEccC-CCEEEE
Confidence 454442 5899999999999988642 245554
No 117
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.28 E-value=0.019 Score=72.02 Aligned_cols=69 Identities=20% Similarity=0.191 Sum_probs=57.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcCC------eEEEEcccHHHHHHHHHHHHH
Q 045263 509 PYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGY------QAAFMVPTELLATQHYEHLLK 582 (742)
Q Consensus 509 pf~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~------qvlilaPT~~La~Q~~~~l~~ 582 (742)
...+|+.|++||..- ..+.+|.|..|||||.+.+.-++..+..+. +++++++|++.|..+.+++..
T Consensus 8 ~~~~t~eQ~~~i~~~--------~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 8 DSTWTDDQWNAIVST--------GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp --CCCHHHHHHHHCC--------SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCC--------CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHH
Confidence 357999999998642 237899999999999999988888887753 899999999999999999988
Q ss_pred hhh
Q 045263 583 LLD 585 (742)
Q Consensus 583 ~l~ 585 (742)
.+.
T Consensus 80 ~l~ 82 (1232)
T 3u4q_A 80 ALE 82 (1232)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 118
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=95.25 E-value=0.1 Score=55.97 Aligned_cols=80 Identities=20% Similarity=0.193 Sum_probs=68.2
Q ss_pred hcCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhhccccC
Q 045263 558 GSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFS 637 (742)
Q Consensus 558 ~~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~~v~~~ 637 (742)
..+.++++.++++.-++.+++.+.+. + ..+..+||+++..+|..+++.+.+|+.+|+|+|.. +...+.+.
T Consensus 264 ~~~~~~lvf~~~~~~~~~l~~~L~~~----~-----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-~~~Gidip 333 (412)
T 3fht_A 264 ITIAQAMIFCHTRKTASWLAAELSKE----G-----HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNV-CARGIDVE 333 (412)
T ss_dssp HSSSEEEEECSSHHHHHHHHHHHHHT----T-----CCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGG-GTSSCCCT
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHhC----C-----CeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCc-cccCCCcc
Confidence 35679999999999999988888764 3 67899999999999999999999999999999964 55688899
Q ss_pred CccEEEEeCC
Q 045263 638 ALRLAIVDEQ 647 (742)
Q Consensus 638 ~l~LVIIDEa 647 (742)
++++||.-..
T Consensus 334 ~~~~Vi~~~~ 343 (412)
T 3fht_A 334 QVSVVINFDL 343 (412)
T ss_dssp TEEEEEESSC
T ss_pred CCCEEEEECC
Confidence 9999885433
No 119
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=94.99 E-value=0.097 Score=55.84 Aligned_cols=29 Identities=7% Similarity=-0.179 Sum_probs=22.2
Q ss_pred CCCCCCceEEEccCCChHHHHHHHHHHHH
Q 045263 528 KQPVPMNRLLQGDVGCGKTVVAFLACMEV 556 (742)
Q Consensus 528 ~~~~~~~~LL~a~TGSGKT~val~ail~~ 556 (742)
..+.+.+++|.||+|+|||.++-..+-..
T Consensus 41 ~~~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 41 MSSQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp HTTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred cCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 34556689999999999998876655444
No 120
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=94.98 E-value=0.077 Score=56.02 Aligned_cols=93 Identities=16% Similarity=0.202 Sum_probs=70.9
Q ss_pred CChHHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCcc
Q 045263 542 GCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDIT 621 (742)
Q Consensus 542 GSGKT~val~ail~~l~~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~ 621 (742)
...|..+.. -++.. ..+.+++|.++|+.-++.+++.+... + +.+..+||+++..++..+++.+.+|..+
T Consensus 12 ~~~K~~~L~-~ll~~-~~~~~~LVF~~t~~~~~~l~~~L~~~----g-----~~~~~lhg~l~~~~r~~~~~~f~~g~~~ 80 (300)
T 3i32_A 12 VRGRLEVLS-DLLYV-ASPDRAMVFTRTKAETEEIAQGLLRL----G-----HPAQALHGDMSQGERERVMGAFRQGEVR 80 (300)
T ss_dssp SSSHHHHHH-HHHHH-HCCSSEEEECSSHHHHHHHHHHHHTT----T-----CCEEEECSCCCTHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHH-HHHHh-cCCCCEEEEECCHHHHHHHHHHHHhC----C-----CCEEEEeCCCCHHHHHHHHHHhhcCCce
Confidence 355654332 22322 34789999999999988888776553 3 6899999999999999999999999999
Q ss_pred EEEechHHHhhccccCCccEEEEeC
Q 045263 622 LVIGTHSLIAEKVEFSALRLAIVDE 646 (742)
Q Consensus 622 IVVgT~~~l~~~v~~~~l~LVIIDE 646 (742)
|+|+|.. +...+.+.++.+||.=+
T Consensus 81 vLVaT~v-a~~Gidi~~v~~VI~~d 104 (300)
T 3i32_A 81 VLVATDV-AARGLDIPQVDLVVHYR 104 (300)
T ss_dssp EEEECST-TTCSTTCCCCSEEEESS
T ss_pred EEEEech-hhcCccccceeEEEEcC
Confidence 9999954 44477788888888533
No 121
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=94.95 E-value=0.18 Score=57.07 Aligned_cols=102 Identities=14% Similarity=0.146 Sum_probs=78.9
Q ss_pred cCCChHHHHHHHHHHHHH---hcCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhh
Q 045263 540 DVGCGKTVVAFLACMEVI---GSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQ 616 (742)
Q Consensus 540 ~TGSGKT~val~ail~~l---~~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~ 616 (742)
+....+....+..+...+ ..+.+++|.++|+.-++.+++.+.+.+.. + +.+..+||+++..+|..+++.+.
T Consensus 316 ~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~-~-----~~v~~~h~~~~~~~R~~~~~~f~ 389 (563)
T 3i5x_A 316 EKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKK-D-----LPILEFHGKITQNKRTSLVKRFK 389 (563)
T ss_dssp SSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTT-T-----SCEEEESTTSCHHHHHHHHHHHH
T ss_pred chhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccC-C-----ceEEEecCCCCHHHHHHHHHHHh
Confidence 333444444444444444 34789999999999999999999887542 2 67999999999999999999999
Q ss_pred cCCccEEEechHHHhhccccCCccEEEEeCCc
Q 045263 617 TGDITLVIGTHSLIAEKVEFSALRLAIVDEQQ 648 (742)
Q Consensus 617 ~G~~~IVVgT~~~l~~~v~~~~l~LVIIDEaH 648 (742)
+|+.+|+|+|.. +...+.+.++.+||.-..-
T Consensus 390 ~g~~~vLvaT~~-~~~GiDip~v~~VI~~~~p 420 (563)
T 3i5x_A 390 KDESGILVCTDV-GARGMDFPNVHEVLQIGVP 420 (563)
T ss_dssp HCSSEEEEECGG-GTSSCCCTTCCEEEEESCC
T ss_pred cCCCCEEEEcch-hhcCCCcccCCEEEEECCC
Confidence 999999999964 4457889999999875543
No 122
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=94.84 E-value=0.082 Score=55.51 Aligned_cols=80 Identities=13% Similarity=0.165 Sum_probs=67.7
Q ss_pred hcCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhhccccC
Q 045263 558 GSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFS 637 (742)
Q Consensus 558 ~~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~~v~~~ 637 (742)
..+.++++.++++.-++.+++.+.+. + ..+..+||+++..+|..+++.+.+|+.+|+|+|. .+...+.+.
T Consensus 236 ~~~~~~lvf~~~~~~~~~l~~~L~~~----~-----~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-~~~~Gid~~ 305 (367)
T 1hv8_A 236 NKEFYGLVFCKTKRDTKELASMLRDI----G-----FKAGAIHGDLSQSQREKVIRLFKQKKIRILIATD-VMSRGIDVN 305 (367)
T ss_dssp STTCCEEEECSSHHHHHHHHHHHHHT----T-----CCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECT-THHHHCCCS
T ss_pred cCCCcEEEEECCHHHHHHHHHHHHhc----C-----CCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECC-hhhcCCCcc
Confidence 34678999999999999888887764 3 6789999999999999999999999999999995 455578889
Q ss_pred CccEEEEeCC
Q 045263 638 ALRLAIVDEQ 647 (742)
Q Consensus 638 ~l~LVIIDEa 647 (742)
++++||.-..
T Consensus 306 ~~~~Vi~~~~ 315 (367)
T 1hv8_A 306 DLNCVINYHL 315 (367)
T ss_dssp CCSEEEESSC
T ss_pred cCCEEEEecC
Confidence 9999987443
No 123
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.78 E-value=0.025 Score=63.14 Aligned_cols=20 Identities=35% Similarity=0.431 Sum_probs=16.6
Q ss_pred CceEEEccCCChHHHHHHHH
Q 045263 533 MNRLLQGDVGCGKTVVAFLA 552 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~a 552 (742)
.+++|.||+|+|||.++-..
T Consensus 51 ~~vLL~GppGtGKTtlAr~i 70 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVI 70 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHH
Confidence 47899999999999876443
No 124
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=94.71 E-value=0.074 Score=56.67 Aligned_cols=80 Identities=9% Similarity=0.085 Sum_probs=68.6
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhhccccCC
Q 045263 559 SGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSA 638 (742)
Q Consensus 559 ~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~~v~~~~ 638 (742)
.+.++++.++++.-++.+++.+.+. + +.+..+||+++..+|..+++.+.+|+..|+|+|. .+...+.+.+
T Consensus 249 ~~~~~lvf~~~~~~~~~l~~~L~~~----~-----~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-~~~~Gidi~~ 318 (391)
T 1xti_A 249 EFNQVVIFVKSVQRCIALAQLLVEQ----N-----FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATN-LFGRGMDIER 318 (391)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHHT----T-----CCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESC-CCSSCBCCTT
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhC----C-----CcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECC-hhhcCCCccc
Confidence 5789999999999999988887764 3 6788999999999999999999999999999994 4556788899
Q ss_pred ccEEEEeCCc
Q 045263 639 LRLAIVDEQQ 648 (742)
Q Consensus 639 l~LVIIDEaH 648 (742)
+++||.-..-
T Consensus 319 ~~~Vi~~~~p 328 (391)
T 1xti_A 319 VNIAFNYDMP 328 (391)
T ss_dssp EEEEEESSCC
T ss_pred CCEEEEeCCC
Confidence 9999975544
No 125
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=94.69 E-value=0.15 Score=54.05 Aligned_cols=81 Identities=15% Similarity=0.254 Sum_probs=69.4
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhhccccCC
Q 045263 559 SGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSA 638 (742)
Q Consensus 559 ~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~~v~~~~ 638 (742)
.+.++++.++++.-++.+++.+.+. + ..+..+||+++..+|..+++.+.+|+.+|+|+|.. +...+.+.+
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~----~-----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~-~~~Gidip~ 311 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSE----G-----HEVSILHGDLQTQERDRLIDDFREGRSKVLITTNV-LARGIDIPT 311 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHT----T-----CCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGG-GSSSCCCTT
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhc----C-----CcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECCh-hhcCCCccc
Confidence 4679999999999999888887764 3 67899999999999999999999999999999964 556888999
Q ss_pred ccEEEEeCCcc
Q 045263 639 LRLAIVDEQQR 649 (742)
Q Consensus 639 l~LVIIDEaHr 649 (742)
+++||.-....
T Consensus 312 ~~~Vi~~~~p~ 322 (395)
T 3pey_A 312 VSMVVNYDLPT 322 (395)
T ss_dssp EEEEEESSCCB
T ss_pred CCEEEEcCCCC
Confidence 99999866654
No 126
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=94.57 E-value=0.25 Score=56.44 Aligned_cols=83 Identities=14% Similarity=0.192 Sum_probs=71.0
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhhccccCC
Q 045263 559 SGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSA 638 (742)
Q Consensus 559 ~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~~v~~~~ 638 (742)
.+.+++|.++|+.-++.+++.+.+.+.. + +.+..+||+++..+|..+++.+.+|+.+|+|+|.. +...+.+.+
T Consensus 287 ~~~~~iVF~~t~~~~~~l~~~L~~~~~~-~-----~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~-~~~GiDip~ 359 (579)
T 3sqw_A 287 SNYKAIIFAPTVKFTSFLCSILKNEFKK-D-----LPILEFHGKITQNKRTSLVKRFKKDESGILVCTDV-GARGMDFPN 359 (579)
T ss_dssp TCCEEEEECSSHHHHHHHHHHHHHHHTT-T-----SCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGG-GTSSCCCTT
T ss_pred CCCcEEEECCcHHHHHHHHHHHHHhhcC-C-----CcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcch-hhcCCCccc
Confidence 3679999999999999999999887642 2 67999999999999999999999999999999975 445788899
Q ss_pred ccEEEEeCCc
Q 045263 639 LRLAIVDEQQ 648 (742)
Q Consensus 639 l~LVIIDEaH 648 (742)
+++||.-..-
T Consensus 360 v~~VI~~~~p 369 (579)
T 3sqw_A 360 VHEVLQIGVP 369 (579)
T ss_dssp CCEEEEESCC
T ss_pred CCEEEEcCCC
Confidence 9999976544
No 127
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=94.51 E-value=0.14 Score=54.72 Aligned_cols=78 Identities=9% Similarity=0.126 Sum_probs=66.6
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhhccccCC
Q 045263 559 SGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSA 638 (742)
Q Consensus 559 ~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~~v~~~~ 638 (742)
.+.++++.++++.-++.+++.+.+. + +.+..+||+++..+|..+++.+.+|+.+|+|+|. .+...+.+.+
T Consensus 257 ~~~~~lVf~~~~~~~~~l~~~L~~~----~-----~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~-~~~~Gidip~ 326 (400)
T 1s2m_A 257 QINQAIIFCNSTNRVELLAKKITDL----G-----YSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSD-LLTRGIDIQA 326 (400)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHH----T-----CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESS-CSSSSCCCTT
T ss_pred CCCcEEEEEecHHHHHHHHHHHHhc----C-----CCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcC-ccccCCCccC
Confidence 4679999999999999888887764 3 6789999999999999999999999999999995 4555788889
Q ss_pred ccEEEEeC
Q 045263 639 LRLAIVDE 646 (742)
Q Consensus 639 l~LVIIDE 646 (742)
+.+||.-+
T Consensus 327 ~~~Vi~~~ 334 (400)
T 1s2m_A 327 VNVVINFD 334 (400)
T ss_dssp EEEEEESS
T ss_pred CCEEEEeC
Confidence 99888643
No 128
>3bqs_A Uncharacterized protein; 10114F, NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.42A {Listeria monocytogenes str} PDB: 3bqt_A 3mab_A
Probab=94.47 E-value=0.023 Score=49.79 Aligned_cols=32 Identities=25% Similarity=0.218 Sum_probs=28.8
Q ss_pred cCCcCCCCCHHHHHHHHhCCCCCHhHHhhcCC
Q 045263 210 CISCVPGLSKRLYHQLENCGFYTLRKLLHHFP 241 (742)
Q Consensus 210 ~I~~LkGVG~k~~~~L~klGI~Tv~DLL~~fP 241 (742)
.+++||+|||+.++.|.++||+|++||-..=|
T Consensus 5 ~L~~LPNiG~~~e~~L~~vGI~s~e~L~~~Ga 36 (93)
T 3bqs_A 5 NLSELPNIGKVLEQDLIKAGIKTPVELKDVGS 36 (93)
T ss_dssp CGGGSTTCCHHHHHHHHHTTCCSHHHHHHHHH
T ss_pred HhhcCCCCCHHHHHHHHHcCCCCHHHHHhCCH
Confidence 67889999999999999999999999976544
No 129
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=94.37 E-value=0.086 Score=55.75 Aligned_cols=38 Identities=8% Similarity=0.019 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHH
Q 045263 516 QLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLAC 553 (742)
Q Consensus 516 Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ai 553 (742)
|++++..+......+.....|+.||.|+|||.++...+
T Consensus 2 ~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la 39 (305)
T 2gno_A 2 AKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELP 39 (305)
T ss_dssp --CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 66677776666555555578999999999998765543
No 130
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=94.35 E-value=0.025 Score=49.51 Aligned_cols=32 Identities=25% Similarity=0.218 Sum_probs=29.0
Q ss_pred cCCcCCCCCHHHHHHHHhCCCCCHhHHhhcCC
Q 045263 210 CISCVPGLSKRLYHQLENCGFYTLRKLLHHFP 241 (742)
Q Consensus 210 ~I~~LkGVG~k~~~~L~klGI~Tv~DLL~~fP 241 (742)
.+++||+||++.++.|.+.||+|++||-..=|
T Consensus 5 ~L~dLPNig~~~e~~L~~~GI~t~~~Lr~~Ga 36 (93)
T 3mab_A 5 NLSELPNIGKVLEQDLIKAGIKTPVELKDVGS 36 (93)
T ss_dssp CGGGSTTCCHHHHHHHHHTTCCSHHHHHHHCH
T ss_pred HHhhCCCCCHHHHHHHHHcCCCCHHHHHhCCH
Confidence 67889999999999999999999999976544
No 131
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.10 E-value=0.71 Score=43.02 Aligned_cols=51 Identities=24% Similarity=0.255 Sum_probs=32.6
Q ss_pred HHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHh-------cCCeEEEEc
Q 045263 517 LSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIG-------SGYQAAFMV 567 (742)
Q Consensus 517 ~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~-------~g~qvlila 567 (742)
...+..+...+....+.+++|.|++|+|||.++-..+..... .+..++++-
T Consensus 28 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (195)
T 1jbk_A 28 DEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALD 85 (195)
T ss_dssp HHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEEC
T ss_pred hHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEee
Confidence 334455555444455568999999999999887655544333 255565554
No 132
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=94.08 E-value=0.19 Score=52.11 Aligned_cols=100 Identities=13% Similarity=0.122 Sum_probs=76.8
Q ss_pred CCChHHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcC-C
Q 045263 541 VGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTG-D 619 (742)
Q Consensus 541 TGSGKT~val~ail~~l~~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G-~ 619 (742)
..+||.....-.+......|.+++|.+.+...+..+.+.+.+.+ + +.+..++|+++..+|..+.+.+.+| .
T Consensus 93 ~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~---g-----~~~~~l~G~~~~~~R~~~i~~F~~~~~ 164 (271)
T 1z5z_A 93 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKEL---N-----TEVPFLYGELSKKERDDIISKFQNNPS 164 (271)
T ss_dssp TTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHH---C-----SCCCEECTTSCHHHHHHHHHHHHHCTT
T ss_pred ccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhc---C-----CcEEEEECCCCHHHHHHHHHHhcCCCC
Confidence 46899877666666666678999999999988887777776532 3 5778899999999999999999998 6
Q ss_pred ccEEEechHHHhhccccCCccEEEEeCCc
Q 045263 620 ITLVIGTHSLIAEKVEFSALRLAIVDEQQ 648 (742)
Q Consensus 620 ~~IVVgT~~~l~~~v~~~~l~LVIIDEaH 648 (742)
+.|++.+.......+.+.....||+=+..
T Consensus 165 ~~v~L~st~~~g~Glnl~~a~~VI~~d~~ 193 (271)
T 1z5z_A 165 VKFIVLSVKAGGFGINLTSANRVIHFDRW 193 (271)
T ss_dssp CCEEEEECCTTCCCCCCTTCSEEEECSCC
T ss_pred CCEEEEehhhhcCCcCcccCCEEEEECCC
Confidence 77555555555567778888888874443
No 133
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.08 E-value=0.075 Score=53.64 Aligned_cols=37 Identities=14% Similarity=0.060 Sum_probs=31.6
Q ss_pred ceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcccH
Q 045263 534 NRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTE 570 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT~ 570 (742)
-.++.|+.|||||...+-.+.+....|.+++++-|..
T Consensus 30 I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~ 66 (219)
T 3e2i_A 30 IECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAI 66 (219)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEecc
Confidence 5589999999999888877888778899999999975
No 134
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.03 E-value=0.033 Score=62.09 Aligned_cols=43 Identities=23% Similarity=0.221 Sum_probs=33.6
Q ss_pred ceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHH
Q 045263 534 NRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLL 581 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT~~La~Q~~~~l~ 581 (742)
-.++.|+.|||||......+ ...+.++++||++++..+.+.+.
T Consensus 163 v~~I~G~aGsGKTt~I~~~~-----~~~~~lVlTpT~~aa~~l~~kl~ 205 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILSRV-----NFEEDLILVPGRQAAEMIRRRAN 205 (446)
T ss_dssp EEEEEECTTSCHHHHHHHHC-----CTTTCEEEESCHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHh-----ccCCeEEEeCCHHHHHHHHHHhh
Confidence 35899999999998664433 22578999999999988877664
No 135
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=93.00 E-value=0.01 Score=56.86 Aligned_cols=79 Identities=11% Similarity=0.125 Sum_probs=64.6
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhhccccCC
Q 045263 559 SGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSA 638 (742)
Q Consensus 559 ~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~~v~~~~ 638 (742)
.+.+++|.++++.-++.+++.+... + +.+..+||+++..+|..+++.+.+|+.+|+|+| ..+...+.+.+
T Consensus 29 ~~~~~iVF~~~~~~~~~l~~~L~~~----~-----~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT-~~~~~Gid~~~ 98 (170)
T 2yjt_D 29 EATRSIVFVRKRERVHELANWLREA----G-----INNCYLEGEMVQGKRNEAIKRLTEGRVNVLVAT-DVAARGIDIPD 98 (170)
Confidence 3568999999998888888777653 3 678899999999999999999999999999999 44555777888
Q ss_pred ccEEEEeCC
Q 045263 639 LRLAIVDEQ 647 (742)
Q Consensus 639 l~LVIIDEa 647 (742)
+.+||.-+.
T Consensus 99 ~~~Vi~~~~ 107 (170)
T 2yjt_D 99 VSHVFNFDM 107 (170)
Confidence 888886443
No 136
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=93.92 E-value=0.27 Score=52.83 Aligned_cols=78 Identities=19% Similarity=0.243 Sum_probs=66.3
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhhccccCC
Q 045263 559 SGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSA 638 (742)
Q Consensus 559 ~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~~v~~~~ 638 (742)
.+.++++.++++.-++.+++.+.+. + +.+..+||+++..+|..+++.+.+|+..|+|+|.. +...+.+.+
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~----~-----~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~-~~~Gidi~~ 344 (410)
T 2j0s_A 275 TITQAVIFCNTKRKVDWLTEKMREA----N-----FTVSSMHGDMPQKERESIMKEFRSGASRVLISTDV-WARGLDVPQ 344 (410)
T ss_dssp TSSEEEEECSSHHHHHHHHHHHHHT----T-----CCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGG-GSSSCCCTT
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHhC----C-----CceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECCh-hhCcCCccc
Confidence 3568999999999999888877763 3 67889999999999999999999999999999964 455788899
Q ss_pred ccEEEEeC
Q 045263 639 LRLAIVDE 646 (742)
Q Consensus 639 l~LVIIDE 646 (742)
+.+||.-.
T Consensus 345 v~~Vi~~~ 352 (410)
T 2j0s_A 345 VSLIINYD 352 (410)
T ss_dssp EEEEEESS
T ss_pred CCEEEEEC
Confidence 99998643
No 137
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=93.82 E-value=0.19 Score=56.71 Aligned_cols=90 Identities=14% Similarity=0.116 Sum_probs=65.6
Q ss_pred ceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCC-------C-C-
Q 045263 534 NRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGS-------T-P- 604 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~-------~-~- 604 (742)
...+.|-+|||||++....+. ..+..+++++|+...|.|+++.++.+++. .|..+-.. . +
T Consensus 16 ~~~l~g~~gs~ka~~~a~l~~---~~~~p~lvv~~~~~~A~~l~~~l~~~~~~--------~v~~fp~~e~lpyd~~~p~ 84 (483)
T 3hjh_A 16 QRLLGELTGAACATLVAEIAE---RHAGPVVLIAPDMQNALRLHDEISQFTDQ--------MVMNLADWETLPYDSFSPH 84 (483)
T ss_dssp EEEEECCCTTHHHHHHHHHHH---HSSSCEEEEESSHHHHHHHHHHHHHTCSS--------CEEECCCCCSCTTCSSCCC
T ss_pred eEEEeCCCchHHHHHHHHHHH---HhCCCEEEEeCCHHHHHHHHHHHHhhCCC--------cEEEEeCcccccccccCCC
Confidence 568999999999987555443 23678999999999999999999987631 24433321 0 1
Q ss_pred ---hHHHHHHHHHhhcCCccEEEechHHHhhcc
Q 045263 605 ---VKQSRMIRKDLQTGDITLVIGTHSLIAEKV 634 (742)
Q Consensus 605 ---~~er~~i~~~l~~G~~~IVVgT~~~l~~~v 634 (742)
..+|...+..+.+++..|||+|.+.+...+
T Consensus 85 ~~~~~~Rl~~l~~L~~~~~~ivv~sv~al~~~~ 117 (483)
T 3hjh_A 85 QDIISSRLSTLYQLPTMQRGVLIVPVNTLMQRV 117 (483)
T ss_dssp HHHHHHHHHHHHHGGGCCSSEEEEEHHHHHBCC
T ss_pred hHHHHHHHHHHHHHHhCCCCEEEEEHHHHhhcC
Confidence 245666777888888889999988875533
No 138
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=93.81 E-value=0.19 Score=57.89 Aligned_cols=77 Identities=12% Similarity=0.154 Sum_probs=66.7
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhhccccCC
Q 045263 559 SGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSA 638 (742)
Q Consensus 559 ~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~~v~~~~ 638 (742)
.+.+++|.++|+.-++++++.|.+. + +.+..+||+++..+|..+.+.+.+|+.+|+|+|.. +...+.+.+
T Consensus 266 ~~~~~IVf~~sr~~~e~la~~L~~~----g-----~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a-~~~GID~p~ 335 (591)
T 2v1x_A 266 KGQSGIIYCFSQKDSEQVTVSLQNL----G-----IHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVA-FGMGIDKPD 335 (591)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT----T-----CCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTT-SCTTCCCSC
T ss_pred cCCCeEEEeCcHHHHHHHHHHHHHC----C-----CCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEech-hhcCCCccc
Confidence 4789999999999999999888763 3 68999999999999999999999999999999964 344778889
Q ss_pred ccEEEEe
Q 045263 639 LRLAIVD 645 (742)
Q Consensus 639 l~LVIID 645 (742)
+++||.-
T Consensus 336 V~~VI~~ 342 (591)
T 2v1x_A 336 VRFVIHH 342 (591)
T ss_dssp EEEEEES
T ss_pred ccEEEEe
Confidence 9998853
No 139
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.71 E-value=0.17 Score=52.50 Aligned_cols=38 Identities=21% Similarity=0.205 Sum_probs=23.2
Q ss_pred HHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHH
Q 045263 517 LSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACM 554 (742)
Q Consensus 517 ~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail 554 (742)
..++..+...+..+...++++.||+|+|||.++-..+-
T Consensus 31 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~ 68 (327)
T 1iqp_A 31 EHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAR 68 (327)
T ss_dssp HHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHH
Confidence 33343333333233333599999999999987654443
No 140
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=93.69 E-value=0.29 Score=53.82 Aligned_cols=76 Identities=16% Similarity=0.155 Sum_probs=65.5
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhhccccCCc
Q 045263 560 GYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSAL 639 (742)
Q Consensus 560 g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~~v~~~~l 639 (742)
+.+++|.++|+.-++.+++.+.+. + +.+..+||+.+..+|..+++.+++|+.+|+|+|.. +...+.+.++
T Consensus 300 ~~~~lVF~~t~~~a~~l~~~L~~~----~-----~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v-~~rGlDi~~v 369 (434)
T 2db3_A 300 ADGTIVFVETKRGADFLASFLSEK----E-----FPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSV-ASRGLDIKNI 369 (434)
T ss_dssp CTTEEEECSSHHHHHHHHHHHHHT----T-----CCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGG-GTSSCCCTTC
T ss_pred CCCEEEEEeCcHHHHHHHHHHHhC----C-----CCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchh-hhCCCCcccC
Confidence 456999999999999888887763 3 67899999999999999999999999999999974 4457889999
Q ss_pred cEEEEe
Q 045263 640 RLAIVD 645 (742)
Q Consensus 640 ~LVIID 645 (742)
.+||.-
T Consensus 370 ~~VI~~ 375 (434)
T 2db3_A 370 KHVINY 375 (434)
T ss_dssp CEEEES
T ss_pred CEEEEE
Confidence 999863
No 141
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=93.68 E-value=0.098 Score=54.11 Aligned_cols=40 Identities=23% Similarity=0.206 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHH
Q 045263 516 QLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACME 555 (742)
Q Consensus 516 Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~ 555 (742)
|..++..+...+..+...++++.||+|+|||.++-..+..
T Consensus 22 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~ 61 (319)
T 2chq_A 22 QDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARD 61 (319)
T ss_dssp CHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHH
Confidence 4445555555444444446999999999999876554443
No 142
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.62 E-value=0.42 Score=50.84 Aligned_cols=55 Identities=24% Similarity=0.255 Sum_probs=33.1
Q ss_pred CHHHHHHHHHHHHhc-CCCCCCceEEEccCCChHHHHHHHHHHHHHhc--------CCeEEEEc
Q 045263 513 TSSQLSAISEIIWDL-KQPVPMNRLLQGDVGCGKTVVAFLACMEVIGS--------GYQAAFMV 567 (742)
Q Consensus 513 t~~Q~~aI~~I~~~~-~~~~~~~~LL~a~TGSGKT~val~ail~~l~~--------g~qvlila 567 (742)
+..+.+.+...+... ....+..++|.||+|+|||.++-..+-..... +..++.+-
T Consensus 25 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~ 88 (384)
T 2qby_B 25 REDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88 (384)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEE
T ss_pred hHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEE
Confidence 444444444444332 23345589999999999998875555443332 55566553
No 143
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.58 E-value=0.11 Score=49.71 Aligned_cols=62 Identities=23% Similarity=0.182 Sum_probs=39.7
Q ss_pred CHHHHHHHHHHHHh---cCCCCCCceEEEccCCChHHHHHHHHHHHHH-hcCCeEEEEcccHHHHHH
Q 045263 513 TSSQLSAISEIIWD---LKQPVPMNRLLQGDVGCGKTVVAFLACMEVI-GSGYQAAFMVPTELLATQ 575 (742)
Q Consensus 513 t~~Q~~aI~~I~~~---~~~~~~~~~LL~a~TGSGKT~val~ail~~l-~~g~qvlilaPT~~La~Q 575 (742)
++.|++++..+.+- +.......++|.||+|+|||..+-..+-... ..|..++++ ....+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~-~~~~~~~~ 81 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF-DTKDLIFR 81 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE-EHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE-EHHHHHHH
Confidence 57888888777632 2222235789999999999988765555444 556666554 33334433
No 144
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.47 E-value=0.12 Score=55.67 Aligned_cols=122 Identities=16% Similarity=0.111 Sum_probs=71.6
Q ss_pred HHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEE
Q 045263 519 AISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIAL 598 (742)
Q Consensus 519 aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~l 598 (742)
.++.++.++..+. -.+|.|++|+|||..++..+......|..++|+... .-..|+..++.......+ . -.+
T Consensus 35 ~LD~~~gGl~~G~--LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE-ms~~ql~~Rlls~~~~v~-----~-~~l 105 (338)
T 4a1f_A 35 QLDNYTSGFNKGS--LVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE-MSAEQLALRALSDLTSIN-----M-HDL 105 (338)
T ss_dssp HHHHHHCSBCTTC--EEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS-SCHHHHHHHHHHHHHCCC-----H-HHH
T ss_pred HHHHHhcCCCCCc--EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC-CCHHHHHHHHHHHhhCCC-----H-HHH
Confidence 3455555665554 679999999999999988888877788888888654 335666666654432221 0 012
Q ss_pred EeCCCChHHHHHHHH---HhhcCCccEEE-ech----HHHhh----ccccC-CccEEEEeCCcccc
Q 045263 599 LTGSTPVKQSRMIRK---DLQTGDITLVI-GTH----SLIAE----KVEFS-ALRLAIVDEQQRFG 651 (742)
Q Consensus 599 l~G~~~~~er~~i~~---~l~~G~~~IVV-gT~----~~l~~----~v~~~-~l~LVIIDEaHrfG 651 (742)
..|..+..++..+.. .+... .+.| -++ ..+.. ...-. ++++||||-.+.+.
T Consensus 106 ~~g~Ls~~e~~~l~~a~~~l~~~--~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~ 169 (338)
T 4a1f_A 106 ESGRLDDDQWENLAKCFDHLSQK--KLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMS 169 (338)
T ss_dssp HHTCCCHHHHHHHHHHHHHHHHS--CEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEECCC
T ss_pred hcCCCCHHHHHHHHHHHHHHhcC--CeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHHhc
Confidence 245555555443221 22222 3433 333 22211 11122 79999999998763
No 145
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=93.33 E-value=0.27 Score=55.73 Aligned_cols=77 Identities=10% Similarity=0.117 Sum_probs=66.7
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhhccccCC
Q 045263 559 SGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSA 638 (742)
Q Consensus 559 ~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~~v~~~~ 638 (742)
.+.+++|.++|+.-++.+++.+.+. + +.+..+||+++..+|..+.+.+.+|+.+|+|+|... ...+++.+
T Consensus 235 ~~~~~IVf~~sr~~~e~l~~~L~~~----g-----~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~-~~GiD~p~ 304 (523)
T 1oyw_A 235 RGKSGIIYCNSRAKVEDTAARLQSK----G-----ISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAF-GMGINKPN 304 (523)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHT----T-----CCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTS-CTTTCCTT
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHC----C-----CCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechh-hCCCCccC
Confidence 5678999999999999998888764 3 689999999999999999999999999999999753 44778889
Q ss_pred ccEEEEe
Q 045263 639 LRLAIVD 645 (742)
Q Consensus 639 l~LVIID 645 (742)
+++||.-
T Consensus 305 v~~VI~~ 311 (523)
T 1oyw_A 305 VRFVVHF 311 (523)
T ss_dssp CCEEEES
T ss_pred ccEEEEE
Confidence 9999863
No 146
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=93.29 E-value=0.33 Score=56.85 Aligned_cols=91 Identities=11% Similarity=0.182 Sum_probs=68.4
Q ss_pred HHHHHhcCCeEEEEcccHHHHHHHHHHHHHhhhh--cc------------CC-C------------CCcEEEEEeCCCCh
Q 045263 553 CMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDN--ME------------ED-K------------HKPKIALLTGSTPV 605 (742)
Q Consensus 553 il~~l~~g~qvlilaPT~~La~Q~~~~l~~~l~~--~~------------~~-~------------~~i~V~ll~G~~~~ 605 (742)
+...+..+.+++|.+|++.-+++.++.+.+.+.. +. .. . ....+..+||+++.
T Consensus 245 ~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~ 324 (715)
T 2va8_A 245 TLDSLSKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSK 324 (715)
T ss_dssp HHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCH
T ss_pred HHHHHhcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCH
Confidence 3444567899999999999999999988875421 00 00 0 00248899999999
Q ss_pred HHHHHHHHHhhcCCccEEEechHHHhhccccCCccEEEE
Q 045263 606 KQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIV 644 (742)
Q Consensus 606 ~er~~i~~~l~~G~~~IVVgT~~~l~~~v~~~~l~LVII 644 (742)
.+|..+.+.+.+|...|+|+|.. +...+.+.++.+||-
T Consensus 325 ~~r~~v~~~f~~g~~~vlvaT~~-l~~Gidip~~~~VI~ 362 (715)
T 2va8_A 325 ALRDLIEEGFRQRKIKVIVATPT-LAAGVNLPARTVIIG 362 (715)
T ss_dssp HHHHHHHHHHHTTCSCEEEECGG-GGGSSCCCBSEEEEC
T ss_pred HHHHHHHHHHHcCCCeEEEEChH-HhcccCCCceEEEEe
Confidence 99999999999999999999954 445778888877553
No 147
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=93.17 E-value=0.065 Score=53.19 Aligned_cols=36 Identities=11% Similarity=0.100 Sum_probs=32.4
Q ss_pred ceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEccc
Q 045263 534 NRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPT 569 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT 569 (742)
-.++.|+.|||||.-.+.++......|.+++++-|.
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 468999999999988888888888889999999887
No 148
>1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3
Probab=93.17 E-value=0.67 Score=41.91 Aligned_cols=73 Identities=16% Similarity=0.237 Sum_probs=48.1
Q ss_pred ccccCCCCC-eEEEEEEEEEeec---cccCCCc-eEEEEEEeeeeccCCCCCCcceeeecCCCceeEEEEEeeeeecccc
Q 045263 250 AQIDLDDGQ-YFIFIGEIISSRG---MKAGCSF-SFLEVIVGCEIADTETTSGDEVVNIDSGQKKKIYLHLKKFFRGTRF 324 (742)
Q Consensus 250 ~i~~l~~Ge-~vti~G~V~~~~~---~~~~~~~-~~l~v~v~~~~~~~~~~~~~~~~~~~~g~~~~i~l~~~~ff~~~~F 324 (742)
++.++.+|+ .+.+.|.|++... ...+.+. .+.++.+. |++|. |.+. .|
T Consensus 4 ~I~dL~~~~~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~----------------D~TG~---I~~t--------lW 56 (119)
T 1o7i_A 4 KVGNLKPNMESVNVTVRVLEASEARQIQTKNGVRTISEAIVG----------------DETGR---VKLT--------LW 56 (119)
T ss_dssp CGGGCCTTCSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEE----------------ETTEE---EEEE--------EE
T ss_pred EHHHCcCCCCcEEEEEEEEECCCCeeEEecCCCEEEEEEEEE----------------eCCCE---EEEE--------EE
Confidence 467888897 6999999998742 1233343 55666655 34452 4332 23
Q ss_pred cccchhHhhhccccCCcEEEEE-EEEeecCCC
Q 045263 325 TSIPFLKSIEGKHKVGEFVCVS-GKVRAMRSN 355 (742)
Q Consensus 325 fn~pfl~~~~~~l~~G~~v~v~-GKv~~~~~~ 355 (742)
..+ ...|++|+.|.|. |+++.++|.
T Consensus 57 ~~~------~~~~~~G~vv~i~~g~v~~~~g~ 82 (119)
T 1o7i_A 57 GKH------AGSIKEGQVVKIENAWTTAFKGQ 82 (119)
T ss_dssp GGG------TTCCCTTCEEEEEEEEEEEETTE
T ss_pred CCh------hhcCCCCCEEEEEeEEEEEeCCE
Confidence 222 2458999999999 999998754
No 149
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=93.12 E-value=0.12 Score=50.13 Aligned_cols=54 Identities=17% Similarity=0.124 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhcCCC----CCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEc
Q 045263 514 SSQLSAISEIIWDLKQP----VPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMV 567 (742)
Q Consensus 514 ~~Q~~aI~~I~~~~~~~----~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlila 567 (742)
+.|++++..+.+-.... .+.+++|.|++|+|||..+...+......+..++++.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 32 DGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp HHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred hhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 35666665544332211 1258999999999999987666655555677776653
No 150
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.06 E-value=0.21 Score=55.53 Aligned_cols=127 Identities=17% Similarity=0.122 Sum_probs=71.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHh-cCCeEEEEcccHHHHHHHHHHHHHhhhhccCC
Q 045263 512 LTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIG-SGYQAAFMVPTELLATQHYEHLLKLLDNMEED 590 (742)
Q Consensus 512 Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~-~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~ 590 (742)
.|++. .++.+..++..+. -.+|.|++|+|||..++..+..... .|..++|+..... ..|+..++........
T Consensus 187 ~tG~~--~LD~~~gGl~~G~--liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s-~~~l~~r~~~~~~~~~-- 259 (454)
T 2r6a_A 187 PTGFT--ELDRMTSGFQRSD--LIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMS-AQQLVMRMLCAEGNIN-- 259 (454)
T ss_dssp CCSCH--HHHHHHSSBCTTC--EEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSC-HHHHHHHHHHHHHTCC--
T ss_pred CCCcH--HHHhhcCCCCCCC--EEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC-HHHHHHHHHHHHcCCC--
Confidence 45543 6788886676654 7899999999999998887777665 4778888764432 3455555432111111
Q ss_pred CCCcEEEEEeCCCChHHHHHHH---HHhhcCCccEEEe-----chHHHhh----ccccCCccEEEEeCCcccc
Q 045263 591 KHKPKIALLTGSTPVKQSRMIR---KDLQTGDITLVIG-----THSLIAE----KVEFSALRLAIVDEQQRFG 651 (742)
Q Consensus 591 ~~~i~V~ll~G~~~~~er~~i~---~~l~~G~~~IVVg-----T~~~l~~----~v~~~~l~LVIIDEaHrfG 651 (742)
.. .+..|..+..++..+. ..+.. .++.+- |...+.. ...-.++++||||+.+.+.
T Consensus 260 ---~~-~l~~g~l~~~~~~~~~~a~~~l~~--~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~ 326 (454)
T 2r6a_A 260 ---AQ-NLRTGKLTPEDWGKLTMAMGSLSN--AGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQ 326 (454)
T ss_dssp ---HH-HHHTSCCCHHHHHHHHHHHHHHHS--SCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSC
T ss_pred ---HH-HHhcCCCCHHHHHHHHHHHHHHhc--CCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhc
Confidence 00 0123444444433222 22222 234443 2222221 1122468999999999874
No 151
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=93.06 E-value=0.31 Score=54.27 Aligned_cols=100 Identities=13% Similarity=0.122 Sum_probs=76.0
Q ss_pred CCChHHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcC-C
Q 045263 541 VGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTG-D 619 (742)
Q Consensus 541 TGSGKT~val~ail~~l~~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G-~ 619 (742)
..++|.....-.+......|.++++.+.+...+..+.+.+...+ + ..+..++|+++.++|..+.+.+++| .
T Consensus 322 ~~s~K~~~l~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~---~-----~~~~~~~g~~~~~~R~~~~~~F~~~~~ 393 (500)
T 1z63_A 322 RRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKEL---N-----TEVPFLYGELSKKERDDIISKFQNNPS 393 (500)
T ss_dssp TTCHHHHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHH---T-----CCCCEEETTSCHHHHHHHHHHHHHCTT
T ss_pred hcchhHHHHHHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhh---C-----CCeEEEECCCCHHHHHHHHHHhcCCCC
Confidence 45788776666666666778999999999998888777776543 3 5678899999999999999999988 5
Q ss_pred ccEEEechHHHhhccccCCccEEEEeCCc
Q 045263 620 ITLVIGTHSLIAEKVEFSALRLAIVDEQQ 648 (742)
Q Consensus 620 ~~IVVgT~~~l~~~v~~~~l~LVIIDEaH 648 (742)
..+++.+.......+.+.....||+-+..
T Consensus 394 ~~vil~st~~~~~Glnl~~~~~vi~~d~~ 422 (500)
T 1z63_A 394 VKFIVLSVKAGGFGINLTSANRVIHFDRW 422 (500)
T ss_dssp CCCCEEECCCC-CCCCCTTCSEEEESSCC
T ss_pred CCEEEEecccccCCCchhhCCEEEEeCCC
Confidence 65444444455667888889999886655
No 152
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=92.78 E-value=0.24 Score=55.20 Aligned_cols=100 Identities=15% Similarity=0.106 Sum_probs=55.6
Q ss_pred CChHHHHHHHHHHHHHhc--CCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEE--------EEeCCCChHHHHHH
Q 045263 542 GCGKTVVAFLACMEVIGS--GYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIA--------LLTGSTPVKQSRMI 611 (742)
Q Consensus 542 GSGKT~val~ail~~l~~--g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~--------ll~G~~~~~er~~i 611 (742)
.++|.......+...+.. +.+++|.++++..++.+++.+........ +.+. .+||+++..+|..+
T Consensus 369 ~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~-----~~~~~~~g~~~~~~~~~~~~~~R~~~ 443 (555)
T 3tbk_A 369 ENPKLRDLYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPALSF-----LKPGILTGRGRTNRATGMTLPAQKCV 443 (555)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGGTT-----CCEEECCC------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCceEEEEeCcHHHHHHHHHHHhhCcCcCc-----eeeeEEEecCCcccccccCHHHHHHH
Confidence 467766555555444433 48999999999999999998887531111 2333 34568899999999
Q ss_pred HHHhhc-CCccEEEechHHHhhccccCCccEEEEeCC
Q 045263 612 RKDLQT-GDITLVIGTHSLIAEKVEFSALRLAIVDEQ 647 (742)
Q Consensus 612 ~~~l~~-G~~~IVVgT~~~l~~~v~~~~l~LVIIDEa 647 (742)
++.+.+ |+.+|+|+|. .+...+.+.++++||.=+.
T Consensus 444 ~~~F~~~g~~~vLvaT~-~~~~GlDlp~v~~VI~~d~ 479 (555)
T 3tbk_A 444 LEAFRASGDNNILIATS-VADEGIDIAECNLVILYEY 479 (555)
T ss_dssp --------CCSEEEECC-CTTCCEETTSCSEEEEESC
T ss_pred HHHHhcCCCeeEEEEcc-hhhcCCccccCCEEEEeCC
Confidence 999999 9999999995 4556788899999987433
No 153
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=92.71 E-value=0.41 Score=56.20 Aligned_cols=95 Identities=16% Similarity=0.222 Sum_probs=70.1
Q ss_pred HHHHhcCCeEEEEcccHHHHHHHHHHHHHhhhhcc-------------CCC-----------CCcEEEEEeCCCChHHHH
Q 045263 554 MEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNME-------------EDK-----------HKPKIALLTGSTPVKQSR 609 (742)
Q Consensus 554 l~~l~~g~qvlilaPT~~La~Q~~~~l~~~l~~~~-------------~~~-----------~~i~V~ll~G~~~~~er~ 609 (742)
...+..+.++++.+|++.-++.++..+.+.+..+. ... ....+..+||+++..+|.
T Consensus 231 ~~~~~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~ 310 (720)
T 2zj8_A 231 YDAIRKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERV 310 (720)
T ss_dssp HHHHHTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHH
T ss_pred HHHHhCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHH
Confidence 34456789999999999999999998887543210 000 001388999999999999
Q ss_pred HHHHHhhcCCccEEEechHHHhhccccCCccEEEEeCCccc
Q 045263 610 MIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRF 650 (742)
Q Consensus 610 ~i~~~l~~G~~~IVVgT~~~l~~~v~~~~l~LVIIDEaHrf 650 (742)
.+.+.+.+|..+|+|+|.. +...+.+.+..+ |||...+|
T Consensus 311 ~v~~~f~~g~~~vlvaT~~-l~~Gvdip~~~~-VI~~~~~y 349 (720)
T 2zj8_A 311 LVEENFRKGIIKAVVATPT-LSAGINTPAFRV-IIRDIWRY 349 (720)
T ss_dssp HHHHHHHTTSSCEEEECST-TGGGCCCCBSEE-EECCSEEC
T ss_pred HHHHHHHCCCCeEEEECcH-hhccCCCCceEE-EEcCCeee
Confidence 9999999999999999954 445777888765 55544443
No 154
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=92.71 E-value=0.078 Score=54.04 Aligned_cols=37 Identities=11% Similarity=0.108 Sum_probs=33.3
Q ss_pred ceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcccH
Q 045263 534 NRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTE 570 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT~ 570 (742)
-.++.|+.|||||..++-.+.+....|.+++++-|..
T Consensus 21 l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~ 57 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAK 57 (234)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecC
Confidence 4588999999999999999999989999999999875
No 155
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=92.62 E-value=0.15 Score=56.43 Aligned_cols=122 Identities=15% Similarity=0.137 Sum_probs=70.8
Q ss_pred HHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHh-cCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEE
Q 045263 519 AISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIG-SGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIA 597 (742)
Q Consensus 519 aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~-~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ 597 (742)
.++.++.++..+. -.+|.|++|+|||..++..+..... .|..++++.-. .-..|+..++......+.. ..
T Consensus 189 ~LD~~lgGl~~G~--l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE-~~~~~l~~R~~~~~~~i~~--~~---- 259 (444)
T 2q6t_A 189 ELDQLIGTLGPGS--LNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE-MPAAQLTLRMMCSEARIDM--NR---- 259 (444)
T ss_dssp HHHHHHCCCCTTC--EEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS-SCHHHHHHHHHHHHTTCCT--TT----
T ss_pred hhhhhcCCcCCCc--EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC-CCHHHHHHHHHHHHcCCCH--HH----
Confidence 5777776665554 6799999999999998888877765 47788887643 2345666655433322220 01
Q ss_pred EEeCCCChHHHHHHHH---HhhcCCccEEEe-c----hHHHhh----ccccCCccEEEEeCCcccc
Q 045263 598 LLTGSTPVKQSRMIRK---DLQTGDITLVIG-T----HSLIAE----KVEFSALRLAIVDEQQRFG 651 (742)
Q Consensus 598 ll~G~~~~~er~~i~~---~l~~G~~~IVVg-T----~~~l~~----~v~~~~l~LVIIDEaHrfG 651 (742)
+..|..+..++..+.. .+.. ..+.+- + ...+.. ...-.++++||||..+.+.
T Consensus 260 l~~g~l~~~~~~~~~~a~~~l~~--~~l~i~d~~~~s~~~l~~~~~~l~~~~~~~lIvID~l~~~~ 323 (444)
T 2q6t_A 260 VRLGQLTDRDFSRLVDVASRLSE--APIYIDDTPDLTLMEVRARARRLVSQNQVGLIIIDYLQLMS 323 (444)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHT--SCEEEECCTTCBHHHHHHHHHHHHHHSCCCEEEEECGGGCB
T ss_pred HhCCCCCHHHHHHHHHHHHHHhc--CCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEcChhhcC
Confidence 1245555555443322 2222 234442 2 222211 1112468999999999874
No 156
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=92.62 E-value=0.037 Score=66.06 Aligned_cols=96 Identities=21% Similarity=0.346 Sum_probs=70.4
Q ss_pred HHHHHhcCCeEEEEcccHHH--------HHHHHHHHHH-hhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEE
Q 045263 553 CMEVIGSGYQAAFMVPTELL--------ATQHYEHLLK-LLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLV 623 (742)
Q Consensus 553 il~~l~~g~qvlilaPT~~L--------a~Q~~~~l~~-~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IV 623 (742)
+...+..|.|+++++|+.+- ++++++.+.+ .+. + ..+..+||+++..+|..+++.+.+|+.+|+
T Consensus 571 i~~~l~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~--~-----~~v~~lHG~m~~~eR~~v~~~F~~G~~~IL 643 (780)
T 1gm5_A 571 VRQEVMRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFP--E-----FKLGLMHGRLSQEEKDRVMLEFAEGRYDIL 643 (780)
T ss_dssp HHHHTTTSCCBCCBCCCC--------CHHHHHHHSGGGSCC----------CBCCCCSSSCCSCSHHHHHHHTTTSSSBC
T ss_pred HHHHHhcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcC--C-----CcEEEEeCCCCHHHHHHHHHHHHCCCCeEE
Confidence 34445668999999997532 3333333333 221 2 578999999999999999999999999999
Q ss_pred EechHHHhhccccCCccEEEEeCCccccccchh
Q 045263 624 IGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRG 656 (742)
Q Consensus 624 VgT~~~l~~~v~~~~l~LVIIDEaHrfG~~qr~ 656 (742)
|+|. .+...+++.++.+||+..+.+++..+-.
T Consensus 644 VaT~-vie~GIDiP~v~~VIi~d~~r~~l~~l~ 675 (780)
T 1gm5_A 644 VSTT-VIEVGIDVPRANVMVIENPERFGLAQLH 675 (780)
T ss_dssp CCSS-CCCSCSCCTTCCEEEBCSCSSSCTTHHH
T ss_pred EECC-CCCccccCCCCCEEEEeCCCCCCHHHHH
Confidence 9995 4556888999999999999988765543
No 157
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=92.53 E-value=0.18 Score=53.27 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=18.2
Q ss_pred CCceEEEccCCChHHHHHHHHHH
Q 045263 532 PMNRLLQGDVGCGKTVVAFLACM 554 (742)
Q Consensus 532 ~~~~LL~a~TGSGKT~val~ail 554 (742)
+..+||.||+|+|||.++-..+.
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~ 73 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVAT 73 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 35799999999999987754443
No 158
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=92.47 E-value=0.35 Score=51.16 Aligned_cols=44 Identities=32% Similarity=0.425 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHHHhc-CCCCCCceEEEccCCChHHHHHHHHHHHH
Q 045263 513 TSSQLSAISEIIWDL-KQPVPMNRLLQGDVGCGKTVVAFLACMEV 556 (742)
Q Consensus 513 t~~Q~~aI~~I~~~~-~~~~~~~~LL~a~TGSGKT~val~ail~~ 556 (742)
+..+.+.+...+... ....+.+++|.||+|+|||.++-..+-..
T Consensus 24 r~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 24 REAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 334444444433322 12345689999999999998875554433
No 159
>2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum}
Probab=92.44 E-value=0.6 Score=41.51 Aligned_cols=70 Identities=14% Similarity=0.146 Sum_probs=45.7
Q ss_pred ccccCCCCCe-EEEEEEEEEeeccc-cCCCc--eEEEEEEeeeeccCCCCCCcceeeecCCCceeEEEEEeeeeeccccc
Q 045263 250 AQIDLDDGQY-FIFIGEIISSRGMK-AGCSF--SFLEVIVGCEIADTETTSGDEVVNIDSGQKKKIYLHLKKFFRGTRFT 325 (742)
Q Consensus 250 ~i~~l~~Ge~-vti~G~V~~~~~~~-~~~~~--~~l~v~v~~~~~~~~~~~~~~~~~~~~g~~~~i~l~~~~ff~~~~Ff 325 (742)
.+.++.+|+. +++.|+|++....+ .+.+. .+.++.+. |++|. |.+. .|.
T Consensus 5 kI~dl~pg~~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~----------------DeTG~---I~~t--------lW~ 57 (106)
T 2k75_A 5 KIRDVSLSTPYVSVIGKITGIHKKEYESDGTTKSVYQGYIE----------------DDTAR---IRIS--------SFG 57 (106)
T ss_dssp CSTTCCTTCSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEE----------------CSSCE---EEEE--------EES
T ss_pred EHHHcCCCCceEEEEEEEEEccccccccCCCeeEEEEEEEE----------------cCCCe---EEEE--------EEc
Confidence 4788889887 89999999875432 22232 24555554 34552 4332 232
Q ss_pred ccchhHhhhccccCCcEEEEE-EEEeecCCC
Q 045263 326 SIPFLKSIEGKHKVGEFVCVS-GKVRAMRSN 355 (742)
Q Consensus 326 n~pfl~~~~~~l~~G~~v~v~-GKv~~~~~~ 355 (742)
. . |++|+.|.+. |+++.+++.
T Consensus 58 ~--------~-l~~Gdvv~i~ng~v~~~~g~ 79 (106)
T 2k75_A 58 K--------Q-LQDSDVVRIDNARVAQFNGY 79 (106)
T ss_dssp S--------C-CCTTEEEEEEEEEEEEETTE
T ss_pred C--------c-cCCCCEEEEEeeEEeEECCE
Confidence 2 1 8999999999 999988753
No 160
>1im4_A DBH; DNA polymerase PALM, thumb, fingers, helix-hairpin-helix, fidelity, processivity, transferase; 2.30A {Sulfolobus solfataricus} SCOP: e.8.1.7
Probab=92.43 E-value=0.046 Score=55.25 Aligned_cols=30 Identities=30% Similarity=0.499 Sum_probs=26.3
Q ss_pred ccCCcCCCCCHHHHHHHHhCCCCCHhHHhh
Q 045263 209 KCISCVPGLSKRLYHQLENCGFYTLRKLLH 238 (742)
Q Consensus 209 ~~I~~LkGVG~k~~~~L~klGI~Tv~DLL~ 238 (742)
.||+.|+|||+++.++|+++||+|+.||..
T Consensus 184 lpv~~l~giG~~~~~~L~~~Gi~TigdL~~ 213 (221)
T 1im4_A 184 LDIDEIPGIGSVLARRLNELGIQKLRDILS 213 (221)
T ss_dssp CBGGGSTTCCHHHHHHHHHTTCCBTTC---
T ss_pred CCcccccCCCHHHHHHHHHcCCCcHHHHHC
Confidence 599999999999999999999999999975
No 161
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=92.39 E-value=0.26 Score=50.95 Aligned_cols=23 Identities=26% Similarity=0.314 Sum_probs=17.8
Q ss_pred CceEEEccCCChHHHHHHHHHHH
Q 045263 533 MNRLLQGDVGCGKTVVAFLACME 555 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~ail~ 555 (742)
.+.++.||+|+|||.++-..+..
T Consensus 43 ~~~ll~G~~G~GKt~la~~l~~~ 65 (323)
T 1sxj_B 43 PHMIISGMPGIGKTTSVHCLAHE 65 (323)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 35999999999999876555443
No 162
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=92.15 E-value=0.17 Score=49.68 Aligned_cols=51 Identities=16% Similarity=0.103 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEc
Q 045263 517 LSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMV 567 (742)
Q Consensus 517 ~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlila 567 (742)
..++..+..-...+.+..++|.||+|+|||..+-..+......+..++++-
T Consensus 37 ~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~ 87 (242)
T 3bos_A 37 DELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIP 87 (242)
T ss_dssp HHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 444444443333334458999999999999887665555444455555543
No 163
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=92.14 E-value=0.27 Score=51.45 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=16.6
Q ss_pred CCccEEEEeCCcccc-ccchhhhh
Q 045263 637 SALRLAIVDEQQRFG-VVQRGRFN 659 (742)
Q Consensus 637 ~~l~LVIIDEaHrfG-~~qr~~l~ 659 (742)
.+.+++||||+|.+. -.+...+.
T Consensus 104 ~~~~vliiDEi~~l~~~~~~~~L~ 127 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLAESQRHLR 127 (324)
T ss_dssp SCEEEEEEESCCCGGGHHHHHHHH
T ss_pred CCCeEEEEECCcccCcHHHHHHHH
Confidence 367899999999986 54444443
No 164
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=91.95 E-value=0.27 Score=46.02 Aligned_cols=41 Identities=27% Similarity=0.322 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHH
Q 045263 516 QLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEV 556 (742)
Q Consensus 516 Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~ 556 (742)
+...+..+.+.+....+.+++|.||+|+|||.++...+...
T Consensus 27 ~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 27 RDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 33445555555445555688999999999998876555444
No 165
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=91.94 E-value=0.16 Score=49.85 Aligned_cols=110 Identities=13% Similarity=0.126 Sum_probs=73.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHH-hcCCeEEEEcccHHHHHHHHHHHHHhhhhccC
Q 045263 511 SLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVI-GSGYQAAFMVPTELLATQHYEHLLKLLDNMEE 589 (742)
Q Consensus 511 ~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l-~~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~ 589 (742)
.-++.|..|+..++.+.. .-.+|+|.-|++||...+..++... ++|+++.+|+|+..-.....+.. +
T Consensus 34 ~~~~~~~~a~~~l~~s~~----~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr~V~vLAp~~~s~~~l~~~~-------~- 101 (189)
T 2l8b_A 34 PRTAGYSDAVSVLAQDRP----SLAIVSGQGGAAGQRERVAELVMMAREQGREVQIIAADRRSQMNMKQDE-------R- 101 (189)
T ss_dssp CCHHHHHHHHHHHHHHSC----CEECCBCSSCSHHHHHHHHHHHHHHHHTTCCEEEECSTTHHHHHHSCTT-------T-
T ss_pred ccCccchhHHHHHhccCC----ceEEEecccchHHHHHHHHHHHHHHHhcCeEEEEEcCchHHHHHHHhhc-------C-
Confidence 345789999999988642 2568999999999988555444443 55899999999975444332211 1
Q ss_pred CCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhhccccCCccEEEEeCCccccccchhhhhhh
Q 045263 590 DKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFGVVQRGRFNSK 661 (742)
Q Consensus 590 ~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~~v~~~~l~LVIIDEaHrfG~~qr~~l~~k 661 (742)
. .| -+++.+..+.+..+|..=+.+||||+-+++.++-..|..+
T Consensus 102 ----l-----~~--------------------~t~t~~~ll~~~~~~tp~s~lIVD~AekLS~kE~~~Lld~ 144 (189)
T 2l8b_A 102 ----L-----SG--------------------ELITGRRQLLEGMAFTPGSTVIVDQGEKLSLKETLTLLDG 144 (189)
T ss_dssp ----C-----SS--------------------CSSSTTTTTTTSCCCCCCCEEEEEESSSHHHHHHHHHHHH
T ss_pred ----c-----Cc--------------------ceeehhhhhcCCCCCCCCCEEEEechhhcCHHHHHHHHHH
Confidence 0 00 0113333444455566667999999999999887777765
No 166
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=91.92 E-value=0.21 Score=55.75 Aligned_cols=106 Identities=11% Similarity=-0.021 Sum_probs=45.3
Q ss_pred CCChHHHHHHHHHHHHH--hcCCeEEEEcccHHHHHHHHHHHHHhhhhccC---CCCCcEEEEEeCCCChHHHHHHHHHh
Q 045263 541 VGCGKTVVAFLACMEVI--GSGYQAAFMVPTELLATQHYEHLLKLLDNMEE---DKHKPKIALLTGSTPVKQSRMIRKDL 615 (742)
Q Consensus 541 TGSGKT~val~ail~~l--~~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~---~~~~i~V~ll~G~~~~~er~~i~~~l 615 (742)
..++|-....-.+.... ..+.+++|.++++..++.+.+.+.+.....+. .-.+.....++|+++..+|..+++.+
T Consensus 369 ~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F 448 (556)
T 4a2p_A 369 NENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAF 448 (556)
T ss_dssp SCCHHHHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC-------------------------
T ss_pred CCChHHHHHHHHHHHHhcCCCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHh
Confidence 45778765555444444 45789999999999999888887664111010 00002333456778999999999999
Q ss_pred hc-CCccEEEechHHHhhccccCCccEEEEeCC
Q 045263 616 QT-GDITLVIGTHSLIAEKVEFSALRLAIVDEQ 647 (742)
Q Consensus 616 ~~-G~~~IVVgT~~~l~~~v~~~~l~LVIIDEa 647 (742)
.+ |+++|+|+|. .+...+.+.++++||.=+.
T Consensus 449 ~~~g~~~vLvaT~-~~~~GiDip~v~~VI~~d~ 480 (556)
T 4a2p_A 449 KTSKDNRLLIATS-VADEGIDIVQCNLVVLYEY 480 (556)
T ss_dssp -----CCEEEEEC------------CEEEEETC
T ss_pred cccCceEEEEEcC-chhcCCCchhCCEEEEeCC
Confidence 99 9999999995 4556788899999997444
No 167
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=91.54 E-value=0.079 Score=43.86 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=29.4
Q ss_pred hccCCcCCCCCHHHHHHHHhCCCCCHhHHhhcCC
Q 045263 208 DKCISCVPGLSKRLYHQLENCGFYTLRKLLHHFP 241 (742)
Q Consensus 208 ~~~I~~LkGVG~k~~~~L~klGI~Tv~DLL~~fP 241 (742)
..+|..|+|||+..+++|.+.||+|++||...=|
T Consensus 6 ~~~l~~L~Gi~~~~~~kL~e~Gi~TvedlA~~~~ 39 (70)
T 1wcn_A 6 ADDLLNLEGVDRDLAFKLAARGVCTLEDLAEQGI 39 (70)
T ss_dssp CHHHHSSTTCCHHHHHHHHTTTCCSHHHHHTSCH
T ss_pred hhHHHHcCCCCHHHHHHHHHcCCCcHHHHHcCCH
Confidence 3467789999999999999999999999987633
No 168
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=91.52 E-value=0.54 Score=49.91 Aligned_cols=34 Identities=21% Similarity=0.120 Sum_probs=23.0
Q ss_pred ceEEEccCCChHHHHHHHHHHHHHhc-CCeEEEEc
Q 045263 534 NRLLQGDVGCGKTVVAFLACMEVIGS-GYQAAFMV 567 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val~ail~~l~~-g~qvlila 567 (742)
.++|.||+|+|||..+-..+-..... +..++++-
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 78999999999998775544333222 45566554
No 169
>3gfk_B DNA-directed RNA polymerase subunit alpha; protein-protein complex, cytoplasm, redox-active center, stress response, transcription; 2.30A {Bacillus subtilis} SCOP: a.60.3.1
Probab=91.36 E-value=0.15 Score=43.17 Aligned_cols=35 Identities=31% Similarity=0.479 Sum_probs=31.8
Q ss_pred chhhhccCCcCCCCCHHHHHHHHhCCCCCHhHHhhc
Q 045263 204 EPLLDKCISCVPGLSKRLYHQLENCGFYTLRKLLHH 239 (742)
Q Consensus 204 ~~~L~~~I~~LkGVG~k~~~~L~klGI~Tv~DLL~~ 239 (742)
...|..||..| +++.+..+.|++.||+||.||+.+
T Consensus 11 ~~~l~~~Ie~L-~LS~Ra~NcLk~agI~Tv~dL~~~ 45 (79)
T 3gfk_B 11 EKVLEMTIEEL-DLSVRSYNCLKRAGINTVQELANK 45 (79)
T ss_dssp CCGGGCBGGGS-CCBHHHHHHHHHTTCCBHHHHTTC
T ss_pred HHHhcCcHHHh-CCCHHHHHHHHHhCCCCHHHHHhC
Confidence 34688999999 799999999999999999999986
No 170
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=91.36 E-value=0.25 Score=57.67 Aligned_cols=59 Identities=12% Similarity=0.040 Sum_probs=43.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcccHHHHHHH
Q 045263 511 SLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQH 576 (742)
Q Consensus 511 ~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT~~La~Q~ 576 (742)
.+|..|++|+..+..... ...+|.|+-|.|||.+.-+++.... ..+++.+||..=+..+
T Consensus 175 ~~T~dQ~~al~~~~~~~~----~~~vlta~RGRGKSa~lG~~~a~~~---~~~~vtAP~~~a~~~l 233 (671)
T 2zpa_A 175 APQPEQQQLLKQLMTMPP----GVAAVTAARGRGKSALAGQLISRIA---GRAIVTAPAKASTDVL 233 (671)
T ss_dssp SCCHHHHHHHHHHTTCCS----EEEEEEECTTSSHHHHHHHHHHHSS---SCEEEECSSCCSCHHH
T ss_pred CCCHHHHHHHHHHHHhhh----CeEEEecCCCCCHHHHHHHHHHHHH---hCcEEECCCHHHHHHH
Confidence 589999999998887432 2579999999999966555554432 3478999997755543
No 171
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=91.33 E-value=0.37 Score=49.87 Aligned_cols=75 Identities=12% Similarity=0.120 Sum_probs=61.5
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhhccccCC
Q 045263 559 SGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSA 638 (742)
Q Consensus 559 ~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~~v~~~~ 638 (742)
.+.++++.++++.-++.+++.+. .+..++|+++..+|..+++.+.+|+.+|+|+|. .+...+.+.+
T Consensus 219 ~~~~~lvf~~~~~~~~~l~~~l~-------------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~-~~~~Gid~~~ 284 (337)
T 2z0m_A 219 KDKGVIVFVRTRNRVAKLVRLFD-------------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTD-VASRGLDIPL 284 (337)
T ss_dssp CCSSEEEECSCHHHHHHHHTTCT-------------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECH-HHHTTCCCCC
T ss_pred CCCcEEEEEcCHHHHHHHHHHhh-------------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcC-ccccCCCccC
Confidence 46889999999988776554332 367899999999999999999999999999996 4556888999
Q ss_pred ccEEEEeCC
Q 045263 639 LRLAIVDEQ 647 (742)
Q Consensus 639 l~LVIIDEa 647 (742)
+++||.-..
T Consensus 285 ~~~Vi~~~~ 293 (337)
T 2z0m_A 285 VEKVINFDA 293 (337)
T ss_dssp BSEEEESSC
T ss_pred CCEEEEecC
Confidence 999987444
No 172
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=91.29 E-value=0.36 Score=50.93 Aligned_cols=55 Identities=22% Similarity=0.364 Sum_probs=31.6
Q ss_pred CHHHHHHHHHHHHhc-CCCCCCceEEEccCCChHHHHHHHHHHHHHhc---CCeEEEEc
Q 045263 513 TSSQLSAISEIIWDL-KQPVPMNRLLQGDVGCGKTVVAFLACMEVIGS---GYQAAFMV 567 (742)
Q Consensus 513 t~~Q~~aI~~I~~~~-~~~~~~~~LL~a~TGSGKT~val~ail~~l~~---g~qvlila 567 (742)
+..+.+.+...+... ....+..++|.|++|+|||..+-..+-..... +..++++-
T Consensus 25 r~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 25 REDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred hHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 344444444433321 13344589999999999998775544433332 55555554
No 173
>2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A
Probab=91.25 E-value=1.7 Score=38.75 Aligned_cols=72 Identities=14% Similarity=0.086 Sum_probs=45.9
Q ss_pred ccccCCC-CCeEEEEEEEEEeeccccCCCceEEEEEEeeeeccCCCCCCcceeeecCCCceeEEEEEeeeeecccccccc
Q 045263 250 AQIDLDD-GQYFIFIGEIISSRGMKAGCSFSFLEVIVGCEIADTETTSGDEVVNIDSGQKKKIYLHLKKFFRGTRFTSIP 328 (742)
Q Consensus 250 ~i~~l~~-Ge~vti~G~V~~~~~~~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~~~~g~~~~i~l~~~~ff~~~~Ffn~p 328 (742)
.+.++.+ ++.+.+.|+|++....+ .........+. |++|. |.+. .|.+.
T Consensus 7 kI~dl~~~~~~v~v~~~V~~~~~~~--~~~~~~~~~l~----------------DeTG~---I~~t--------~W~~~- 56 (109)
T 2kbn_A 7 KIVDIVENGQWANLKAKVIQLWENT--HESISQVGLLG----------------DETGI---IKFT--------IWKNA- 56 (109)
T ss_dssp CTTTCCSTTCEEEEEEEEEEEEECC--CSSEEEEEEEE----------------CTTCC---EEEE--------EEGGG-
T ss_pred EHHHCCCCCCcEEEEEEEEEeEcCC--CCeEEEEEEEE----------------CCCCe---EEEE--------EECcc-
Confidence 4678876 77899999999875422 22233333333 44553 4432 23211
Q ss_pred hhHhhhccccCCcEEEEE-EEEeecCCC
Q 045263 329 FLKSIEGKHKVGEFVCVS-GKVRAMRSN 355 (742)
Q Consensus 329 fl~~~~~~l~~G~~v~v~-GKv~~~~~~ 355 (742)
....+++|+.|.|. |++..|+|.
T Consensus 57 ----~~~~~~~G~~V~i~n~~v~~~~G~ 80 (109)
T 2kbn_A 57 ----ELPLLEQGESYLLRSVVVGEYNDR 80 (109)
T ss_dssp ----CCCCCCTTCEEEEEEEEEEEETTE
T ss_pred ----cccccCCCCEEEEEEEEEEEECCE
Confidence 12578999999999 899998754
No 174
>4dez_A POL IV 1, DNA polymerase IV 1; Y-family, transferase; HET: DNA; 2.60A {Mycobacterium smegmatis}
Probab=91.11 E-value=0.11 Score=55.95 Aligned_cols=37 Identities=16% Similarity=0.166 Sum_probs=31.8
Q ss_pred hccCCcCCCCCHHHHHHHHhCCCCCHhHHhhcCCCcce
Q 045263 208 DKCISCVPGLSKRLYHQLENCGFYTLRKLLHHFPRTYA 245 (742)
Q Consensus 208 ~~~I~~LkGVG~k~~~~L~klGI~Tv~DLL~~fPrrYe 245 (742)
..||..|+|||++++++|+++||+|+.||.. +|+...
T Consensus 177 ~lpv~~l~GiG~~~~~~L~~~GI~Ti~dL~~-~~~~~L 213 (356)
T 4dez_A 177 DRPPDALWGVGPKTTKKLAAMGITTVADLAV-TDPSVL 213 (356)
T ss_dssp TSCGGGSTTCCHHHHHHHHHTTCCSHHHHHT-SCHHHH
T ss_pred cCcHHHHcCCchhHHHHHHHcCCCeeccccc-CCHHHH
Confidence 3599999999999999999999999999864 465543
No 175
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=91.08 E-value=0.43 Score=56.78 Aligned_cols=85 Identities=15% Similarity=0.098 Sum_probs=66.6
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHhhhhc--cCCCCCcEEEEEeCCCChHHHHHHHHHhh-----cCCccEEEechHHHh
Q 045263 559 SGYQAAFMVPTELLATQHYEHLLKLLDNM--EEDKHKPKIALLTGSTPVKQSRMIRKDLQ-----TGDITLVIGTHSLIA 631 (742)
Q Consensus 559 ~g~qvlilaPT~~La~Q~~~~l~~~l~~~--~~~~~~i~V~ll~G~~~~~er~~i~~~l~-----~G~~~IVVgT~~~l~ 631 (742)
.+.++||.+|++.-++++++.+.+.+..+ .....++.+..+||+++..+|..+++.+. +|...|||+|.. +.
T Consensus 302 ~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~i-ae 380 (773)
T 2xau_A 302 EAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNI-AE 380 (773)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTH-HH
T ss_pred CCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcH-HH
Confidence 37899999999999999999888644322 00012278999999999999999888888 899999999954 44
Q ss_pred hccccCCccEEEE
Q 045263 632 EKVEFSALRLAIV 644 (742)
Q Consensus 632 ~~v~~~~l~LVII 644 (742)
..+.+.++.+||-
T Consensus 381 ~GidIp~v~~VId 393 (773)
T 2xau_A 381 TSLTIDGIVYVVD 393 (773)
T ss_dssp HTCCCTTEEEEEE
T ss_pred hCcCcCCeEEEEe
Confidence 5788888887763
No 176
>1jx4_A DNA polymerase IV (family Y); protein-DNA complex, Y-family, transferase-D complex; HET: DNA MSE ADI; 1.70A {Sulfolobus solfataricus} SCOP: d.240.1.1 e.8.1.7 PDB: 1jxl_A* 1n48_A* 1n56_A* 1ryr_A* 1rys_A* 1s0m_A* 1s0n_A* 1s0o_A* 1s10_A* 1s97_A* 1s9f_A* 2ia6_A* 2ibk_A* 2r8g_A* 2r8h_A* 2r8i_A* 2rdj_A* 3fds_A* 3m9m_B* 3m9n_B* ...
Probab=91.00 E-value=0.1 Score=56.25 Aligned_cols=36 Identities=22% Similarity=0.224 Sum_probs=32.0
Q ss_pred ccCCcCCCCCHHHHHHHHhCCCCCHhHHhhcCCCcce
Q 045263 209 KCISCVPGLSKRLYHQLENCGFYTLRKLLHHFPRTYA 245 (742)
Q Consensus 209 ~~I~~LkGVG~k~~~~L~klGI~Tv~DLL~~fPrrYe 245 (742)
.||..|+|||++++++|+++||+|+.||.. +|+...
T Consensus 178 lpv~~l~GiG~~~~~~L~~~Gi~t~~dL~~-~~~~~L 213 (352)
T 1jx4_A 178 LDIADVPGIGNITAEKLKKLGINKLVDTLS-IEFDKL 213 (352)
T ss_dssp SBGGGSTTCCHHHHHHHHTTTCCBGGGGGS-SCHHHH
T ss_pred CCCCcccccCHHHHHHHHHcCCchHHHHHC-CCHHHH
Confidence 599999999999999999999999999985 665543
No 177
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=90.93 E-value=0.13 Score=57.94 Aligned_cols=61 Identities=10% Similarity=0.081 Sum_probs=43.8
Q ss_pred HHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhc-CCeEEEEcccHHHHHHHHHHHHH
Q 045263 519 AISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGS-GYQAAFMVPTELLATQHYEHLLK 582 (742)
Q Consensus 519 aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~-g~qvlilaPT~~La~Q~~~~l~~ 582 (742)
.++.++.++..+. -.+|.|++|+|||..++..+...... |..++++.-.. -..|+..++..
T Consensus 231 ~LD~~lgGl~~G~--l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~-s~~~l~~r~~~ 292 (503)
T 1q57_A 231 GINDKTLGARGGE--VIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEE-SVEETAEDLIG 292 (503)
T ss_dssp THHHHHCCCCTTC--EEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSS-CHHHHHHHHHH
T ss_pred hhhHhhcccCCCe--EEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccC-CHHHHHHHHHH
Confidence 4566665555543 67999999999999998888887766 77888876433 34566666543
No 178
>3bq0_A POL IV, DBH, DNA polymerase IV; Y-family, lesion bypass; HET: DNA; 2.60A {Sulfolobus acidocaldarius} SCOP: d.240.1.1 e.8.1.7 PDB: 3bq1_A* 3bq2_A* 1k1q_A 1k1s_A
Probab=90.91 E-value=0.1 Score=56.21 Aligned_cols=36 Identities=25% Similarity=0.329 Sum_probs=32.0
Q ss_pred ccCCcCCCCCHHHHHHHHhCCCCCHhHHhhcCCCcce
Q 045263 209 KCISCVPGLSKRLYHQLENCGFYTLRKLLHHFPRTYA 245 (742)
Q Consensus 209 ~~I~~LkGVG~k~~~~L~klGI~Tv~DLL~~fPrrYe 245 (742)
.||+.|+|||++++++|+++||+|+.||.. +|+...
T Consensus 179 lpv~~l~GiG~~~~~~L~~~Gi~t~~dL~~-~~~~~L 214 (354)
T 3bq0_A 179 LDIDEIPGIGSVLARRLNELGIQKLRDILS-KNYNEL 214 (354)
T ss_dssp CBSTTSTTCCHHHHHHHTTTTCCBGGGGGG-SCHHHH
T ss_pred CCcccccCcCHHHHHHHHHcCCccHHHHhc-CCHHHH
Confidence 599999999999999999999999999986 565543
No 179
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=90.89 E-value=0.38 Score=50.71 Aligned_cols=36 Identities=22% Similarity=0.329 Sum_probs=29.4
Q ss_pred CCceEEEccCCChHHHHHHHHHHHHH-hcCCeEEEEc
Q 045263 532 PMNRLLQGDVGCGKTVVAFLACMEVI-GSGYQAAFMV 567 (742)
Q Consensus 532 ~~~~LL~a~TGSGKT~val~ail~~l-~~g~qvlila 567 (742)
..+++|.||+|+|||..+...+.... ..|..++++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 35899999999999999877777777 7788877664
No 180
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=90.50 E-value=0.59 Score=54.65 Aligned_cols=97 Identities=21% Similarity=0.249 Sum_probs=70.1
Q ss_pred HHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCC---------------------CcEEEEEeCCCChHHHHH
Q 045263 552 ACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKH---------------------KPKIALLTGSTPVKQSRM 610 (742)
Q Consensus 552 ail~~l~~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~---------------------~i~V~ll~G~~~~~er~~ 610 (742)
.+...+..+.++++.+|++.-++..++.+.+.+..+-.... ...+..+||+++..+|..
T Consensus 234 ~~~~~~~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~ 313 (702)
T 2p6r_A 234 LVEECVAENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRV 313 (702)
T ss_dssp HHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHH
T ss_pred HHHHHHhcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHH
Confidence 34444567899999999999999999888775432100000 024778999999999999
Q ss_pred HHHHhhcCCccEEEechHHHhhccccCCccEEEEeCCccc
Q 045263 611 IRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRF 650 (742)
Q Consensus 611 i~~~l~~G~~~IVVgT~~~l~~~v~~~~l~LVIIDEaHrf 650 (742)
+.+.+.+|..+|+|+|.. +...+.+.+..+ |||-..+|
T Consensus 314 v~~~f~~g~~~vlvaT~~-l~~Gidip~~~~-VI~~~~~y 351 (702)
T 2p6r_A 314 VEDAFRRGNIKVVVATPT-LAAGVNLPARRV-IVRSLYRF 351 (702)
T ss_dssp HHHHHHTTSCCEEEECST-TTSSSCCCBSEE-EECCSEEE
T ss_pred HHHHHHCCCCeEEEECcH-HhccCCCCceEE-EEcCceee
Confidence 999999999999999975 334677777766 44433333
No 181
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=90.43 E-value=0.16 Score=54.55 Aligned_cols=78 Identities=17% Similarity=0.247 Sum_probs=57.6
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhhccccCC
Q 045263 559 SGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSA 638 (742)
Q Consensus 559 ~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~~v~~~~ 638 (742)
.+.++++.++++.-++.+++.+.+. + +.+..+||+++..+|..+++.+.+|+.+|+|+|.. +...+.+.+
T Consensus 279 ~~~~~lvf~~~~~~~~~l~~~l~~~----~-----~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~-~~~Gidip~ 348 (414)
T 3eiq_A 279 TITQAVIFINTRRKVDWLTEKMHAR----D-----FTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDL-LARGIDVQQ 348 (414)
T ss_dssp CCSSCEEECSCHHHHHHHHHHHHTT----T-----CCCEEC---CHHHHHHHHHHHHSCC---CEEECSS-CC--CCGGG
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHhc----C-----CeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCc-cccCCCccC
Confidence 3568999999999998888777653 3 67899999999999999999999999999999964 344677888
Q ss_pred ccEEEEeC
Q 045263 639 LRLAIVDE 646 (742)
Q Consensus 639 l~LVIIDE 646 (742)
+.+||.-.
T Consensus 349 v~~Vi~~~ 356 (414)
T 3eiq_A 349 VSLVINYD 356 (414)
T ss_dssp CSCEEESS
T ss_pred CCEEEEeC
Confidence 88888643
No 182
>1z3e_B DNA-directed RNA polymerase alpha chain; bacterial transcription regulation, disulfide stress; 1.50A {Bacillus subtilis} SCOP: a.60.3.1 PDB: 3ihq_B
Probab=90.36 E-value=0.17 Score=42.21 Aligned_cols=34 Identities=29% Similarity=0.458 Sum_probs=30.9
Q ss_pred hhhhccCCcCCCCCHHHHHHHHhCCCCCHhHHhhc
Q 045263 205 PLLDKCISCVPGLSKRLYHQLENCGFYTLRKLLHH 239 (742)
Q Consensus 205 ~~L~~~I~~LkGVG~k~~~~L~klGI~Tv~DLL~~ 239 (742)
..+..||..| +++++..+.|++.||+||.||+.+
T Consensus 5 ~~l~~~Ie~L-~LS~Ra~NcLkragI~Tv~dL~~~ 38 (73)
T 1z3e_B 5 KVLEMTIEEL-DLSVRSYNCLKRAGINTVQELANK 38 (73)
T ss_dssp HHHTCBGGGS-CCBHHHHHHHHHTTCCBHHHHHTS
T ss_pred hhhcCcHHHh-CCCHHHHHHHHHcCCCcHHHHHcC
Confidence 3577899998 699999999999999999999986
No 183
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=90.29 E-value=0.25 Score=53.11 Aligned_cols=32 Identities=25% Similarity=0.205 Sum_probs=22.2
Q ss_pred CCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEE
Q 045263 532 PMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFM 566 (742)
Q Consensus 532 ~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlil 566 (742)
+..+||.||+|+|||.++-..+... +...+.+
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~---~~~~~~v 115 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEA---NSTFFSV 115 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHH---TCEEEEE
T ss_pred CceEEEECCCCCcHHHHHHHHHHHh---CCCEEEe
Confidence 3578999999999998875544432 4444444
No 184
>3k4g_A DNA-directed RNA polymerase subunit alpha; bacterial transcription regulation, DNA-directed RNA polymer nucleotidyltransferase; HET: MLY; 2.05A {Escherichia coli k-12} SCOP: a.60.3.1 PDB: 3n4m_B* 1lb2_B* 3n97_B* 1xs9_D
Probab=90.29 E-value=0.21 Score=42.97 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=32.4
Q ss_pred chhhhccCCcCCCCCHHHHHHHHhCCCCCHhHHhhcC
Q 045263 204 EPLLDKCISCVPGLSKRLYHQLENCGFYTLRKLLHHF 240 (742)
Q Consensus 204 ~~~L~~~I~~LkGVG~k~~~~L~klGI~Tv~DLL~~f 240 (742)
...|.+||..| +++.+..+.|++.||+||.||+.+=
T Consensus 7 ~~~l~~~I~~L-~LSvRa~NcLkragI~Tv~dL~~~s 42 (86)
T 3k4g_A 7 DPILLRPVDDL-ELTVRSANCLXAEAIHYIGDLVQRT 42 (86)
T ss_dssp CGGGGSBGGGG-CCCHHHHHHHHHTTCCBHHHHHHSC
T ss_pred hHHHhCcHHHh-CCCHHHHHHHHHcCCCcHHHHHhCC
Confidence 34688999999 7999999999999999999999873
No 185
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=90.25 E-value=1.9 Score=51.35 Aligned_cols=98 Identities=11% Similarity=0.087 Sum_probs=73.2
Q ss_pred CChHHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCcc
Q 045263 542 GCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDIT 621 (742)
Q Consensus 542 GSGKT~val~ail~~l~~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~ 621 (742)
.|||..+....+......|.++||.+.....+.-+.+.|.. .+ +.+..++|+++..+|..++..+.+++..
T Consensus 554 ~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~----~g-----~~~~~i~G~~~~~eR~~~i~~F~~~~~~ 624 (800)
T 3mwy_W 554 SSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSI----KG-----INFQRLDGTVPSAQRRISIDHFNSPDSN 624 (800)
T ss_dssp TCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHH----HT-----CCCEEESTTSCHHHHHHHHHTTSSTTCS
T ss_pred cChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHh----CC-----CCEEEEeCCCCHHHHHHHHHHhhCCCCC
Confidence 47887655555555456688999999998876666655543 34 7889999999999999999999987655
Q ss_pred --EEEechHHHhhccccCCccEEEEeCCc
Q 045263 622 --LVIGTHSLIAEKVEFSALRLAIVDEQQ 648 (742)
Q Consensus 622 --IVVgT~~~l~~~v~~~~l~LVIIDEaH 648 (742)
+++.+.......+.+.....||+=+.+
T Consensus 625 ~~v~LlSt~agg~GlNL~~a~~VI~~D~~ 653 (800)
T 3mwy_W 625 DFVFLLSTRAGGLGINLMTADTVVIFDSD 653 (800)
T ss_dssp CCCEEEEHHHHTTTCCCTTCCEEEESSCC
T ss_pred ceEEEEecccccCCCCccccceEEEecCC
Confidence 455555556678888889888885554
No 186
>3osn_A DNA polymerase IOTA; hoogsteen base PAIR, protein-DNA complex, Y-family DNA polym translesion synthesis, nucleoside triphosphate; HET: DNA DOC 6OG TTP; 1.90A {Homo sapiens} PDB: 2dpj_A* 2fll_A* 2fln_A* 2flp_A* 3epg_A* 3epi_A* 2dpi_A* 3g6v_A* 3g6y_A* 3g6x_A* 3gv7_B* 3gv8_B* 3ngd_A* 3gv5_B* 3q8p_B* 3q8q_B* 3q8r_B* 3q8s_B* 4ebc_A* 4ebd_A* ...
Probab=89.93 E-value=0.16 Score=56.20 Aligned_cols=35 Identities=26% Similarity=0.410 Sum_probs=31.0
Q ss_pred cCCcCCCCCHHHHHHHHhCCCCCHhHHhhcCCCcce
Q 045263 210 CISCVPGLSKRLYHQLENCGFYTLRKLLHHFPRTYA 245 (742)
Q Consensus 210 ~I~~LkGVG~k~~~~L~klGI~Tv~DLL~~fPrrYe 245 (742)
||..|+|||++++++|+++||+|+.||.. +|+...
T Consensus 235 pv~~l~GIG~~t~~~L~~lGI~TigdLa~-~~~~~L 269 (420)
T 3osn_A 235 HIKEIPGIGYKTAKCLEALGINSVRDLQT-FSPKIL 269 (420)
T ss_dssp SGGGSTTCCHHHHHHHHHTTCCSHHHHHH-SCHHHH
T ss_pred cHHHccCCCHHHHHHHHHhCCCcHHHHhh-CCHHHH
Confidence 59999999999999999999999999975 576554
No 187
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=89.87 E-value=1.7 Score=48.09 Aligned_cols=36 Identities=28% Similarity=0.339 Sum_probs=29.6
Q ss_pred CCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEc
Q 045263 532 PMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMV 567 (742)
Q Consensus 532 ~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlila 567 (742)
+..+++.|++|+|||.++...+......|++++++.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~ 132 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA 132 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 456789999999999998777766667788888876
No 188
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=89.56 E-value=0.53 Score=57.44 Aligned_cols=97 Identities=7% Similarity=-0.038 Sum_probs=75.9
Q ss_pred CCChHHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCC-
Q 045263 541 VGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGD- 619 (742)
Q Consensus 541 TGSGKT~val~ail~~l~~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~- 619 (742)
..+.|.....-. +.. ..+.+++|.++++.-++.+.+.+... .+ +++..+||+++..+|..+++.+++|+
T Consensus 486 ~~~~K~~~L~~l-l~~-~~~~k~iVF~~~~~~~~~l~~~L~~~---~g-----~~~~~lhG~~~~~~R~~~l~~F~~g~~ 555 (968)
T 3dmq_A 486 NFDPRVEWLMGY-LTS-HRSQKVLVICAKAATALQLEQVLRER---EG-----IRAAVFHEGMSIIERDRAAAWFAEEDT 555 (968)
T ss_dssp TTSHHHHHHHHH-HHH-TSSSCCCEECSSTHHHHHHHHHHHTT---TC-----CCEEEECTTSCTTHHHHHHHHHHSTTS
T ss_pred CccHHHHHHHHH-HHh-CCCCCEEEEeCcHHHHHHHHHHHHHH---cC-----CcEEEEeCCCCHHHHHHHHHHHhCCCC
Confidence 345565433322 222 45789999999998888777766642 24 78999999999999999999999998
Q ss_pred -ccEEEechHHHhhccccCCccEEEEeCCc
Q 045263 620 -ITLVIGTHSLIAEKVEFSALRLAIVDEQQ 648 (742)
Q Consensus 620 -~~IVVgT~~~l~~~v~~~~l~LVIIDEaH 648 (742)
++|+|+| ..+...+.+.++..||+-+..
T Consensus 556 ~~~vLvaT-~v~~~GlDl~~~~~VI~~d~p 584 (968)
T 3dmq_A 556 GAQVLLCS-EIGSEGRNFQFASHMVMFDLP 584 (968)
T ss_dssp SCEEEECS-CCTTCSSCCTTCCEEECSSCC
T ss_pred cccEEEec-chhhcCCCcccCcEEEEecCC
Confidence 9999999 667778899999999987776
No 189
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=89.43 E-value=0.2 Score=58.30 Aligned_cols=81 Identities=16% Similarity=0.205 Sum_probs=62.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHh--hhhccCCCCCcEEEEEeCC--------CChHHHHHHHHHhhcCCccEEEechHH
Q 045263 560 GYQAAFMVPTELLATQHYEHLLKL--LDNMEEDKHKPKIALLTGS--------TPVKQSRMIRKDLQTGDITLVIGTHSL 629 (742)
Q Consensus 560 g~qvlilaPT~~La~Q~~~~l~~~--l~~~~~~~~~i~V~ll~G~--------~~~~er~~i~~~l~~G~~~IVVgT~~~ 629 (742)
+.+++|.++++..++.+++.|... +...+ +++..+||+ ++..+|..+++.+.+|+.+|+|+|..
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g-----~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~- 473 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVG-----VKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTV- 473 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC----------CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECS-
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccC-----cceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccc-
Confidence 789999999999999999888764 22223 788899999 99999999999999999999999964
Q ss_pred HhhccccCCccEEEEeC
Q 045263 630 IAEKVEFSALRLAIVDE 646 (742)
Q Consensus 630 l~~~v~~~~l~LVIIDE 646 (742)
+...+.+.++.+||.=+
T Consensus 474 ~~~GIDip~v~~VI~~d 490 (699)
T 4gl2_A 474 AEEGLDIKECNIVIRYG 490 (699)
T ss_dssp CCTTSCCCSCCCCEEES
T ss_pred cccCCccccCCEEEEeC
Confidence 44578888999988533
No 190
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=89.39 E-value=0.33 Score=53.72 Aligned_cols=71 Identities=10% Similarity=0.111 Sum_probs=51.0
Q ss_pred hcCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhhccccC
Q 045263 558 GSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFS 637 (742)
Q Consensus 558 ~~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~~v~~~ 637 (742)
..+.++++.+|++.-++.+++.+.+. + .++..+||. +|..+++.+.+|+.+|+|+|.. +...+.+.
T Consensus 175 ~~~~~~lVF~~s~~~a~~l~~~L~~~----~-----~~v~~lhg~----~R~~~~~~F~~g~~~vLVaT~v-~e~GiDip 240 (440)
T 1yks_A 175 ADKRPTAWFLPSIRAANVMAASLRKA----G-----KSVVVLNRK----TFEREYPTIKQKKPDFILATDI-AEMGANLC 240 (440)
T ss_dssp HCCSCEEEECSCHHHHHHHHHHHHHT----T-----CCEEECCSS----SCC--------CCCSEEEESSS-TTCCTTCC
T ss_pred hcCCCEEEEeCCHHHHHHHHHHHHHc----C-----CCEEEecch----hHHHHHhhhcCCCceEEEECCh-hheeeccC
Confidence 45889999999999999999888774 3 689999993 4566777889999999999954 44567777
Q ss_pred CccEEE
Q 045263 638 ALRLAI 643 (742)
Q Consensus 638 ~l~LVI 643 (742)
+++||
T Consensus 241 -v~~VI 245 (440)
T 1yks_A 241 -VERVL 245 (440)
T ss_dssp -CSEEE
T ss_pred -ceEEE
Confidence 88877
No 191
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=89.23 E-value=0.072 Score=59.16 Aligned_cols=75 Identities=21% Similarity=0.234 Sum_probs=0.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhhccccCCc
Q 045263 560 GYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSAL 639 (742)
Q Consensus 560 g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~~v~~~~l 639 (742)
+.++++.+|++.-++.+++.+... + ..+..+||+++..+|..+++.+.+|+.+|+|+|.. +...+.+.++
T Consensus 333 ~~~~lvF~~s~~~~~~l~~~L~~~----~-----~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~-~~~GlDip~v 402 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWLAAELSKE----G-----HQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNV-CARGIDVEQV 402 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCceEEEeCcHHHHHHHHHHHHhC----C-----ccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccc-cccCCccccC
Confidence 568999999999888888877664 3 67889999999999999999999999999999954 4557888899
Q ss_pred cEEEE
Q 045263 640 RLAIV 644 (742)
Q Consensus 640 ~LVII 644 (742)
.+||.
T Consensus 403 ~~VI~ 407 (479)
T 3fmp_B 403 SVVIN 407 (479)
T ss_dssp -----
T ss_pred CEEEE
Confidence 99873
No 192
>4f4y_A POL IV, DNA polymerase IV; Y-family polymerase, transferase-DNA complex; HET: DNA DCP; 2.34A {Sulfolobus acidocaldarius} PDB: 3bq0_A* 3bq1_A* 3bq2_A* 4hyk_A* 1k1q_A 1k1s_A
Probab=88.93 E-value=0.14 Score=55.60 Aligned_cols=36 Identities=25% Similarity=0.329 Sum_probs=32.1
Q ss_pred ccCCcCCCCCHHHHHHHHhCCCCCHhHHhhcCCCcce
Q 045263 209 KCISCVPGLSKRLYHQLENCGFYTLRKLLHHFPRTYA 245 (742)
Q Consensus 209 ~~I~~LkGVG~k~~~~L~klGI~Tv~DLL~~fPrrYe 245 (742)
.||..|+|||++++++|+++||+|+.||.. +|+...
T Consensus 179 lpv~~l~GiG~~~~~~L~~~GI~Ti~dL~~-~~~~~L 214 (362)
T 4f4y_A 179 LDIDEIPGIGSVLARRLNELGIQKLRDILS-KNYNEL 214 (362)
T ss_dssp CBSTTSTTCCSTTHHHHHHTTCCBGGGGTT-SCHHHH
T ss_pred CChhhccCCCHHHHHHHHHcCCChHHHHhc-CCHHHH
Confidence 599999999999999999999999999875 576544
No 193
>1ci4_A Protein (barrier-TO-autointegration factor (BAF) ); DNA binding protein, retroviral integration, preintegration complex; 1.90A {Homo sapiens} SCOP: a.60.5.1 PDB: 1qck_A 2bzf_A 2ezx_A 2ezy_A 2ezz_A 2odg_A
Probab=88.77 E-value=0.3 Score=42.05 Aligned_cols=33 Identities=27% Similarity=0.452 Sum_probs=29.8
Q ss_pred hccCCcCCCCCHHHHHHHHhCCCCCHhHHhhcC
Q 045263 208 DKCISCVPGLSKRLYHQLENCGFYTLRKLLHHF 240 (742)
Q Consensus 208 ~~~I~~LkGVG~k~~~~L~klGI~Tv~DLL~~f 240 (742)
+.+|+.++||||..++.|++.||.+-+.||--|
T Consensus 17 eK~V~evpGIG~~~~~~L~~~Gf~kAy~lLGqF 49 (89)
T 1ci4_A 17 EKPVGSLAGIGEVLGKKLEERGFDKAYVVLGQF 49 (89)
T ss_dssp TCCGGGSTTCCHHHHHHHHHTTCCSHHHHHHHH
T ss_pred CCCcccCCCcCHHHHHHHHHcCccHHHHHHHHH
Confidence 478999999999999999999999999988644
No 194
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=88.73 E-value=0.78 Score=48.32 Aligned_cols=62 Identities=11% Similarity=0.136 Sum_probs=45.5
Q ss_pred HHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHh
Q 045263 519 AISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKL 583 (742)
Q Consensus 519 aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT~~La~Q~~~~l~~~ 583 (742)
.++.++.++..+. -.+|.|++|+|||..++..+......|..++++.-. .-..|+..++...
T Consensus 57 ~LD~~lgGl~~G~--l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE-~s~~~l~~R~~~~ 118 (315)
T 3bh0_A 57 ELDRMTYGYKRRN--FVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE-MGKKENIKRLIVT 118 (315)
T ss_dssp HHHHHHSSBCTTC--EEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS-SCHHHHHHHHHHH
T ss_pred HHHhhcCCCCCCc--EEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC-CCHHHHHHHHHHH
Confidence 4666666665554 689999999999999888888877778788887644 4456666666554
No 195
>3pzp_A DNA polymerase kappa; DNA nucleotidyltransferase, DNA binding nucleotide binding M binding, nucleus; HET: DNA TTD DTP; 3.34A {Homo sapiens}
Probab=88.57 E-value=0.21 Score=56.76 Aligned_cols=31 Identities=26% Similarity=0.269 Sum_probs=29.3
Q ss_pred ccCCcCCCCCHHHHHHHHhCCCCCHhHHhhc
Q 045263 209 KCISCVPGLSKRLYHQLENCGFYTLRKLLHH 239 (742)
Q Consensus 209 ~~I~~LkGVG~k~~~~L~klGI~Tv~DLL~~ 239 (742)
.||..|+|||+++++.|+++||+|+.||...
T Consensus 338 LPV~kl~GIG~~t~~~L~~lGI~TigDL~~~ 368 (517)
T 3pzp_A 338 LPIRKVSGIGKVTEKMLKALGIITCTELYQQ 368 (517)
T ss_dssp CBGGGSTTCCHHHHHHHHHTTCCBHHHHHHH
T ss_pred CChhhhccccHHHHHHHHHhCCCcHHHHHhh
Confidence 5999999999999999999999999999875
No 196
>3gqc_A DNA repair protein REV1; protein-DNA complex, DNA damage, DNA repair, DNA synthesis, binding, magnesium, metal-binding; HET: DNA DOC DCP; 2.50A {Homo sapiens}
Probab=88.53 E-value=0.22 Score=56.38 Aligned_cols=36 Identities=17% Similarity=0.277 Sum_probs=32.1
Q ss_pred ccCCcCCCCCHHHHHHHHhCCCCCHhHHhhcCCCcce
Q 045263 209 KCISCVPGLSKRLYHQLENCGFYTLRKLLHHFPRTYA 245 (742)
Q Consensus 209 ~~I~~LkGVG~k~~~~L~klGI~Tv~DLL~~fPrrYe 245 (742)
.||..|+|||++++++|+++||+|+.||.. +|+...
T Consensus 315 LPV~~l~GIG~~t~~kL~~lGI~TigDLa~-~~~~~L 350 (504)
T 3gqc_A 315 QLVTNLPGVGHSMESKLASLGIKTCGDLQY-MTMAKL 350 (504)
T ss_dssp SBGGGSTTCCHHHHHHHHHTTCCBHHHHTT-SCHHHH
T ss_pred CChhHhhCcCHHHHHHHHHcCCCcHHHHHh-ccHHHH
Confidence 599999999999999999999999999874 676654
No 197
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=88.34 E-value=2 Score=47.74 Aligned_cols=36 Identities=25% Similarity=0.310 Sum_probs=30.6
Q ss_pred CCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEc
Q 045263 532 PMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMV 567 (742)
Q Consensus 532 ~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlila 567 (742)
|..+++.|++|+|||.++...+......|++++++.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~ 135 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVC 135 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 557899999999999998877777777899998876
No 198
>2aq4_A DNA repair protein REV1; polymerase, PAD, N-digit, G-loop, transferase; HET: DNA DOC DCP; 2.32A {Saccharomyces cerevisiae} PDB: 3bjy_A* 3osp_A*
Probab=88.27 E-value=0.22 Score=55.21 Aligned_cols=38 Identities=16% Similarity=0.192 Sum_probs=33.8
Q ss_pred ccCCcCCCCCHHHHHHHHh--CCCCCHhHHhhcCCCccee
Q 045263 209 KCISCVPGLSKRLYHQLEN--CGFYTLRKLLHHFPRTYAD 246 (742)
Q Consensus 209 ~~I~~LkGVG~k~~~~L~k--lGI~Tv~DLL~~fPrrYeD 246 (742)
.||+.|+|||++++++|++ +||+|+.||...+|+...-
T Consensus 241 lpv~~l~GiG~~~~~~L~~~~~GI~ti~dL~~~~~~~~L~ 280 (434)
T 2aq4_A 241 FKLDDLPGVGHSTLSRLESTFDSPHSLNDLRKRYTLDALK 280 (434)
T ss_dssp CCGGGSTTCCHHHHHHHHHHTTCCCSHHHHHHHCCHHHHH
T ss_pred CCcccccCcCHHHHHHHHHhcCCceEHHHHHhcCCHHHHH
Confidence 5999999999999999999 8999999999887765543
No 199
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=88.27 E-value=0.41 Score=47.40 Aligned_cols=47 Identities=21% Similarity=0.241 Sum_probs=35.5
Q ss_pred ceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHH
Q 045263 534 NRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLL 581 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT~~La~Q~~~~l~ 581 (742)
..+|.|++|+|||..++..+...+..|..++++.-.. -..++.+.+.
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~-~~~~~~~~~~ 71 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE-HPVQVRQNMA 71 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS-CHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC-CHHHHHHHHH
Confidence 6799999999999998877777777788888886433 3455555544
No 200
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=88.18 E-value=0.4 Score=53.18 Aligned_cols=22 Identities=32% Similarity=0.265 Sum_probs=17.7
Q ss_pred CCceEEEccCCChHHHHHHHHH
Q 045263 532 PMNRLLQGDVGCGKTVVAFLAC 553 (742)
Q Consensus 532 ~~~~LL~a~TGSGKT~val~ai 553 (742)
+..+||.||+|+|||.++-..+
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia 188 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVA 188 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHH
Confidence 3578999999999998775443
No 201
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.01 E-value=1.1 Score=49.13 Aligned_cols=42 Identities=21% Similarity=0.192 Sum_probs=28.8
Q ss_pred HhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEccc
Q 045263 525 WDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPT 569 (742)
Q Consensus 525 ~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT 569 (742)
..+.-..|..+||.||+|+|||..+-..+-+. |...+.+...
T Consensus 175 ~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~---~~~f~~v~~s 216 (405)
T 4b4t_J 175 ESLGIAQPKGVILYGPPGTGKTLLARAVAHHT---DCKFIRVSGA 216 (405)
T ss_dssp HHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH---TCEEEEEEGG
T ss_pred HhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh---CCCceEEEhH
Confidence 33344456689999999999998775554433 6666666554
No 202
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=87.94 E-value=0.64 Score=55.27 Aligned_cols=106 Identities=11% Similarity=-0.021 Sum_probs=49.3
Q ss_pred CCChHHHHHHHHHHHHH--hcCCeEEEEcccHHHHHHHHHHHHHhhhhccC---CCCCcEEEEEeCCCChHHHHHHHHHh
Q 045263 541 VGCGKTVVAFLACMEVI--GSGYQAAFMVPTELLATQHYEHLLKLLDNMEE---DKHKPKIALLTGSTPVKQSRMIRKDL 615 (742)
Q Consensus 541 TGSGKT~val~ail~~l--~~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~---~~~~i~V~ll~G~~~~~er~~i~~~l 615 (742)
..++|.......+...+ ..+.+++|.++++..+..+.+.+.......+. .-.+.....++|+++..+|..+++.+
T Consensus 610 ~~~~K~~~L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F 689 (797)
T 4a2q_A 610 NENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAF 689 (797)
T ss_dssp CCCHHHHHHHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC------------------------
T ss_pred CCChHHHHHHHHHHHHhccCCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHh
Confidence 35778765554444433 34689999999999999998888763110000 00002344567889999999999999
Q ss_pred hc-CCccEEEechHHHhhccccCCccEEEEeCC
Q 045263 616 QT-GDITLVIGTHSLIAEKVEFSALRLAIVDEQ 647 (742)
Q Consensus 616 ~~-G~~~IVVgT~~~l~~~v~~~~l~LVIIDEa 647 (742)
++ |+++|+|+|. .+...+.+.++++||.=+.
T Consensus 690 ~~~g~~~vLVaT~-~~~~GIDlp~v~~VI~yd~ 721 (797)
T 4a2q_A 690 KTSKDNRLLIATS-VADEGIDIVQCNLVVLYEY 721 (797)
T ss_dssp ----CCSEEEEEC-C-------CCCSEEEEESC
T ss_pred hccCCceEEEEcC-chhcCCCchhCCEEEEeCC
Confidence 99 9999999995 4455788899999997444
No 203
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=87.88 E-value=0.46 Score=47.96 Aligned_cols=38 Identities=13% Similarity=0.069 Sum_probs=33.3
Q ss_pred CceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcccH
Q 045263 533 MNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTE 570 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT~ 570 (742)
.-.++.|++|+|||..++..+.++...|.+++++-|..
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~ 50 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKI 50 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEecc
Confidence 35688999999999999999888888899999997765
No 204
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=87.65 E-value=0.81 Score=53.60 Aligned_cols=71 Identities=14% Similarity=0.170 Sum_probs=57.6
Q ss_pred hcCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhhccccC
Q 045263 558 GSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFS 637 (742)
Q Consensus 558 ~~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~~v~~~ 637 (742)
..+.+++|.+|++.-++.+++.|.+. + +++..+||. +|..+++.+.+|+.+|+|+|. .+...+.+.
T Consensus 408 ~~~~~~lVF~~s~~~~e~la~~L~~~----g-----~~v~~lHg~----eR~~v~~~F~~g~~~VLVaTd-v~e~GIDip 473 (673)
T 2wv9_A 408 DYAGKTVWFVASVKMSNEIAQCLQRA----G-----KRVIQLNRK----SYDTEYPKCKNGDWDFVITTD-ISEMGANFG 473 (673)
T ss_dssp SCCSCEEEECSSHHHHHHHHHHHHTT----T-----CCEEEECSS----SHHHHGGGGGTCCCSEEEECG-GGGTTCCCC
T ss_pred hCCCCEEEEECCHHHHHHHHHHHHhC----C-----CeEEEeChH----HHHHHHHHHHCCCceEEEECc-hhhcceeeC
Confidence 35789999999999999888877654 3 689999993 677788889999999999995 444567777
Q ss_pred CccEEE
Q 045263 638 ALRLAI 643 (742)
Q Consensus 638 ~l~LVI 643 (742)
+.+||
T Consensus 474 -v~~VI 478 (673)
T 2wv9_A 474 -ASRVI 478 (673)
T ss_dssp -CSEEE
T ss_pred -CcEEE
Confidence 77776
No 205
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=87.41 E-value=0.17 Score=50.21 Aligned_cols=48 Identities=23% Similarity=0.199 Sum_probs=34.0
Q ss_pred ceEEEccCCChHHHHHHHHHHHHHh-cCCeEEEEcccHHHHHHHHHHHHH
Q 045263 534 NRLLQGDVGCGKTVVAFLACMEVIG-SGYQAAFMVPTELLATQHYEHLLK 582 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val~ail~~l~-~g~qvlilaPT~~La~Q~~~~l~~ 582 (742)
-.+|.|++|+|||..++..+...+. .|..++++.-. .-.+|+.+++..
T Consensus 32 l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E-~~~~~~~~~~~~ 80 (251)
T 2zts_A 32 TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE-ERARDLRREMAS 80 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS-SCHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc-CCHHHHHHHHHH
Confidence 6899999999999998877766544 46777777533 335555555544
No 206
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=87.23 E-value=0.62 Score=54.00 Aligned_cols=100 Identities=16% Similarity=0.109 Sum_probs=51.7
Q ss_pred CChHHHHHHHHHHHHH--hcCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEE--------eCCCChHHHHHH
Q 045263 542 GCGKTVVAFLACMEVI--GSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALL--------TGSTPVKQSRMI 611 (742)
Q Consensus 542 GSGKT~val~ail~~l--~~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll--------~G~~~~~er~~i 611 (742)
.+.|.......+.... ..+.+++|.++++.-++.+++.+....... .+++..+ ||+++..+|..+
T Consensus 378 ~~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~~~-----~~~~~~l~G~~~~~~h~~~~~~eR~~v 452 (696)
T 2ykg_A 378 ENPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPKLS-----FLKPGILTGRGKTNQNTGMTLPAQKCI 452 (696)
T ss_dssp CCHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTTCC-----SCCEEC---------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCCcc-----ccceeEEEccCCCccccCCCHHHHHHH
Confidence 3556544333333322 246799999999999999998888742111 1456666 458899999999
Q ss_pred HHHhhc-CCccEEEechHHHhhccccCCccEEEEeCC
Q 045263 612 RKDLQT-GDITLVIGTHSLIAEKVEFSALRLAIVDEQ 647 (742)
Q Consensus 612 ~~~l~~-G~~~IVVgT~~~l~~~v~~~~l~LVIIDEa 647 (742)
++.+.+ |+.+|+|+|.. +...+.+.++.+||.-+.
T Consensus 453 ~~~F~~~g~~~vLVaT~v-~~~GiDip~v~~VI~~d~ 488 (696)
T 2ykg_A 453 LDAFKASGDHNILIATSV-ADEGIDIAQCNLVILYEY 488 (696)
T ss_dssp --------CCSCSEEEES-SCCC---CCCSEEEEESC
T ss_pred HHHHHhcCCccEEEEech-hhcCCcCccCCEEEEeCC
Confidence 999998 99999999953 455788889999986443
No 207
>1t94_A Polymerase (DNA directed) kappa; replication, DNA repair, Y-family DNA polymerase, translesion DNA synthesis, lesion bypass; 2.40A {Homo sapiens} SCOP: d.240.1.1 e.8.1.7 PDB: 2oh2_A* 2w7o_A* 2w7p_A* 3hed_A* 3in5_A*
Probab=87.01 E-value=0.29 Score=54.64 Aligned_cols=32 Identities=25% Similarity=0.252 Sum_probs=29.8
Q ss_pred ccCCcCCCCCHHHHHHHHhCCCCCHhHHhhcCC
Q 045263 209 KCISCVPGLSKRLYHQLENCGFYTLRKLLHHFP 241 (742)
Q Consensus 209 ~~I~~LkGVG~k~~~~L~klGI~Tv~DLL~~fP 241 (742)
.||+.|+|||+++.+.|+++||+|+.||... |
T Consensus 282 lpv~~l~GiG~~~~~~L~~lGI~T~gdL~~~-~ 313 (459)
T 1t94_A 282 LPIRKVSGIGKVTEKMLKALGIITCTELYQQ-R 313 (459)
T ss_dssp CBGGGCTTSCHHHHHHHHHTTCCBHHHHHHT-H
T ss_pred CCHHhcCCcCHHHHHHHHHcCCCcHHHHHhh-H
Confidence 5999999999999999999999999999874 5
No 208
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=86.91 E-value=3.8 Score=37.55 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=24.7
Q ss_pred ccccCCcEEEEEEEEeecCCCceeEEeeceeeecCc
Q 045263 335 GKHKVGEFVCVSGKVRAMRSNNHYEMREYNIDVLKD 370 (742)
Q Consensus 335 ~~l~~G~~v~v~GKv~~~~~~~~~~m~~~~~e~l~~ 370 (742)
..|++|+.+.|+|+++.+++. .++.-..+..+++
T Consensus 78 ~~~~~g~yVrV~G~l~~f~g~--~qi~~~~ir~v~d 111 (132)
T 3kdf_D 78 TVVPPETYVKVAGHLRSFQNK--KSLVAFKIMPLED 111 (132)
T ss_dssp CCCCTTCEEEEEEEEEEETTE--EEEEEEEEEECSS
T ss_pred ccccCCCEEEEEEEEEeECCE--EEEEEEEEEEcCC
Confidence 678999999999999998754 4444444544444
No 209
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=86.52 E-value=3.2 Score=45.82 Aligned_cols=46 Identities=15% Similarity=0.172 Sum_probs=30.2
Q ss_pred CCceEEEccCCChHHHHHHHHHHHHHhc--CCeEEEEcccHHHHHHHHH
Q 045263 532 PMNRLLQGDVGCGKTVVAFLACMEVIGS--GYQAAFMVPTELLATQHYE 578 (742)
Q Consensus 532 ~~~~LL~a~TGSGKT~val~ail~~l~~--g~qvlilaPT~~La~Q~~~ 578 (742)
+..++|.||+|+|||..+-...-..... +..++++-.. .+..+...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~-~~~~~~~~ 177 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSE-KFLNDLVD 177 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHH-HHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHH-HHHHHHHH
Confidence 4578999999999998876555444444 6666666443 34444443
No 210
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=86.45 E-value=1.2 Score=49.06 Aligned_cols=69 Identities=13% Similarity=0.027 Sum_probs=54.3
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhhccccCC
Q 045263 559 SGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSA 638 (742)
Q Consensus 559 ~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~~v~~~~ 638 (742)
.+.++++.+|++.-++.+++.+.+. + .++..+||+ ++..+++.+.+|+.+|+|+|.. +...+.+.
T Consensus 170 ~~~~~lVF~~~~~~~~~l~~~L~~~----~-----~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v-~e~GiDip- 234 (431)
T 2v6i_A 170 FDGRTVWFVHSIKQGAEIGTCLQKA----G-----KKVLYLNRK----TFESEYPKCKSEKWDFVITTDI-SEMGANFK- 234 (431)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHT----T-----CCEEEESTT----THHHHTTHHHHSCCSEEEECGG-GGTSCCCC-
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHc----C-----CeEEEeCCc----cHHHHHHhhcCCCCeEEEECch-HHcCcccC-
Confidence 3678999999999999998888775 3 689999996 4566778889999999999964 44456665
Q ss_pred ccEE
Q 045263 639 LRLA 642 (742)
Q Consensus 639 l~LV 642 (742)
...|
T Consensus 235 ~~~V 238 (431)
T 2v6i_A 235 ADRV 238 (431)
T ss_dssp CSEE
T ss_pred CcEE
Confidence 4444
No 211
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=86.38 E-value=1 Score=48.55 Aligned_cols=51 Identities=16% Similarity=0.140 Sum_probs=37.9
Q ss_pred HHHHHHH--hcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcccHH
Q 045263 519 AISEIIW--DLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTEL 571 (742)
Q Consensus 519 aI~~I~~--~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT~~ 571 (742)
.++.++. ++..+ ...+|.|++|+|||..++..+......|..++|+.-...
T Consensus 50 ~LD~~Lg~GGl~~G--~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s 102 (356)
T 1u94_A 50 SLDIALGAGGLPMG--RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 102 (356)
T ss_dssp HHHHHTSSSSEETT--SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred HHHHHhccCCccCC--eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 3455543 34333 368999999999999999888888888888998876443
No 212
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=86.30 E-value=0.72 Score=42.51 Aligned_cols=21 Identities=24% Similarity=0.241 Sum_probs=17.2
Q ss_pred CCceEEEccCCChHHHHHHHH
Q 045263 532 PMNRLLQGDVGCGKTVVAFLA 552 (742)
Q Consensus 532 ~~~~LL~a~TGSGKT~val~a 552 (742)
+.+++|.|++|+|||.++-..
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i 44 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYL 44 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHH
Confidence 358999999999999877543
No 213
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=86.17 E-value=1 Score=47.10 Aligned_cols=37 Identities=27% Similarity=0.316 Sum_probs=27.2
Q ss_pred CCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcc
Q 045263 532 PMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVP 568 (742)
Q Consensus 532 ~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaP 568 (742)
+..++|.||+|+|||..+-..+......+..++++-.
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~ 73 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA 73 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH
Confidence 3578999999999998876655555455677777643
No 214
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.65 E-value=0.78 Score=50.91 Aligned_cols=40 Identities=20% Similarity=0.259 Sum_probs=27.4
Q ss_pred cCCCCCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEccc
Q 045263 527 LKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPT 569 (742)
Q Consensus 527 ~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT 569 (742)
+.-..|..+||+||+|+|||..+-..+-+. |...+.+...
T Consensus 210 ~g~~~prGvLLyGPPGTGKTllAkAiA~e~---~~~f~~v~~s 249 (434)
T 4b4t_M 210 MGIRAPKGALMYGPPGTGKTLLARACAAQT---NATFLKLAAP 249 (434)
T ss_dssp HCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGG
T ss_pred CCCCCCCeeEEECcCCCCHHHHHHHHHHHh---CCCEEEEehh
Confidence 344456689999999999998865554433 6666665543
No 215
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=85.61 E-value=0.94 Score=55.02 Aligned_cols=105 Identities=11% Similarity=-0.023 Sum_probs=49.5
Q ss_pred CChHHHHHHHHHHHHH--hcCCeEEEEcccHHHHHHHHHHHHHhhhhccC---CCCCcEEEEEeCCCChHHHHHHHHHhh
Q 045263 542 GCGKTVVAFLACMEVI--GSGYQAAFMVPTELLATQHYEHLLKLLDNMEE---DKHKPKIALLTGSTPVKQSRMIRKDLQ 616 (742)
Q Consensus 542 GSGKT~val~ail~~l--~~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~---~~~~i~V~ll~G~~~~~er~~i~~~l~ 616 (742)
.++|.....-.+.... ..+.++||.++++..++.+.+.+.+.....+. .-.+.....+||+++..+|..+++.+.
T Consensus 611 ~~~K~~~L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr 690 (936)
T 4a2w_A 611 ENPKLEELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFK 690 (936)
T ss_dssp CCHHHHHHHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC-------------------------
T ss_pred CCHHHHHHHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhh
Confidence 4777655444443332 34689999999999999999888875111010 000023445578899999999999999
Q ss_pred c-CCccEEEechHHHhhccccCCccEEEEeCC
Q 045263 617 T-GDITLVIGTHSLIAEKVEFSALRLAIVDEQ 647 (742)
Q Consensus 617 ~-G~~~IVVgT~~~l~~~v~~~~l~LVIIDEa 647 (742)
+ |+.+|+|+|.. +...+.+.++++||.=+.
T Consensus 691 ~~g~~~VLVaT~~-~~eGIDlp~v~~VI~yD~ 721 (936)
T 4a2w_A 691 TSKDNRLLIATSV-ADEGIDIVQCNLVVLYEY 721 (936)
T ss_dssp ---CCSEEEEECC-------CCCCSEEEEESC
T ss_pred ccCCeeEEEEeCc-hhcCCcchhCCEEEEeCC
Confidence 9 99999999964 455788899999997544
No 216
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=85.59 E-value=1.4 Score=47.05 Aligned_cols=41 Identities=10% Similarity=-0.016 Sum_probs=34.2
Q ss_pred ceEEEccCCChHHHHHHHHHHHHHhc--CCeEEEEcccHHHHH
Q 045263 534 NRLLQGDVGCGKTVVAFLACMEVIGS--GYQAAFMVPTELLAT 574 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val~ail~~l~~--g~qvlilaPT~~La~ 574 (742)
..+|.||+|+|||..++..+..+... |..++|+-....+..
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~ 72 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITP 72 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhH
Confidence 47999999999999999988888776 788999887766643
No 217
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=85.44 E-value=0.37 Score=53.14 Aligned_cols=76 Identities=12% Similarity=0.211 Sum_probs=62.5
Q ss_pred hcCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhhccccC
Q 045263 558 GSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFS 637 (742)
Q Consensus 558 ~~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~~v~~~ 637 (742)
..+.++++.+++...++.+.+.+. +..++|+++..+|..+++.+.+|+.+|+|+| ..+...+.+.
T Consensus 347 ~~~~k~lvF~~~~~~~~~l~~~l~--------------~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T-~~~~~Gldlp 411 (472)
T 2fwr_A 347 HRKDKIIIFTRHNELVYRISKVFL--------------IPAITHRTSREEREEILEGFRTGRFRAIVSS-QVLDEGIDVP 411 (472)
T ss_dssp TSSSCBCCBCSCHHHHHHHHHHTT--------------CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCS-SCCCSSSCSC
T ss_pred CCCCcEEEEECCHHHHHHHHHHhC--------------cceeeCCCCHHHHHHHHHHHhCCCCCEEEEc-CchhcCcccc
Confidence 457899999999988777665431 3357899999999999999999999999999 6677788999
Q ss_pred CccEEEEeCCc
Q 045263 638 ALRLAIVDEQQ 648 (742)
Q Consensus 638 ~l~LVIIDEaH 648 (742)
++.+||+-...
T Consensus 412 ~~~~Vi~~~~~ 422 (472)
T 2fwr_A 412 DANVGVIMSGS 422 (472)
T ss_dssp CBSEEEEECCS
T ss_pred cCcEEEEECCC
Confidence 99999985554
No 218
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=85.38 E-value=0.99 Score=50.10 Aligned_cols=40 Identities=28% Similarity=0.350 Sum_probs=27.6
Q ss_pred cCCCCCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEccc
Q 045263 527 LKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPT 569 (742)
Q Consensus 527 ~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT 569 (742)
+.-..|..+||+||+|+|||..+-..+-+. |...+.+...
T Consensus 210 ~g~~~prGvLL~GPPGtGKTllAkAiA~e~---~~~~~~v~~s 249 (437)
T 4b4t_L 210 VGIKPPKGVLLYGPPGTGKTLLAKAVAATI---GANFIFSPAS 249 (437)
T ss_dssp HCCCCCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGG
T ss_pred CCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehh
Confidence 334445689999999999999876554433 6666666543
No 219
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=85.20 E-value=0.68 Score=45.15 Aligned_cols=47 Identities=19% Similarity=0.311 Sum_probs=32.1
Q ss_pred HHHHHHH-hcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEc
Q 045263 519 AISEIIW-DLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMV 567 (742)
Q Consensus 519 aI~~I~~-~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlila 567 (742)
+++.++. ++..+. ..+|.|++|+|||..+...+......+..++++.
T Consensus 11 ~Ld~~~~ggi~~G~--~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 11 DFDKLIQGGIPQGF--FIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp HHHGGGTTSEETTC--EEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHhcCCCcCCC--EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 3444443 343332 6789999999999887766655556677787775
No 220
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=85.11 E-value=1.1 Score=58.41 Aligned_cols=41 Identities=20% Similarity=0.188 Sum_probs=36.0
Q ss_pred CCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcccHHH
Q 045263 532 PMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELL 572 (742)
Q Consensus 532 ~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT~~L 572 (742)
+.++++.||+|+|||..+...+.++..+|.+++|+.....+
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~ 1467 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 1467 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEccccc
Confidence 45899999999999999999999988999999999877544
No 221
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=84.67 E-value=1.5 Score=47.48 Aligned_cols=50 Identities=16% Similarity=0.177 Sum_probs=37.5
Q ss_pred HHHHHHH--hcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcccH
Q 045263 519 AISEIIW--DLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTE 570 (742)
Q Consensus 519 aI~~I~~--~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT~ 570 (742)
.++.++. ++..+ ..++|.|++|+|||..++..+......|..++|+....
T Consensus 61 ~LD~~Lg~GGl~~G--~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 61 SLDLALGVGGIPRG--RITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp HHHHHTSSSSEETT--SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred HHHHHhCCCCccCC--cEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 3455554 44333 36799999999999999888888877888888887554
No 222
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=84.61 E-value=0.68 Score=51.66 Aligned_cols=42 Identities=26% Similarity=0.318 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHH
Q 045263 515 SQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEV 556 (742)
Q Consensus 515 ~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~ 556 (742)
.|...+..+..-+.+....++||.||+|+|||.++-..+...
T Consensus 184 Gr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 184 GRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp CCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 345555555554444445689999999999999876555443
No 223
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=84.45 E-value=1.4 Score=47.51 Aligned_cols=52 Identities=27% Similarity=0.179 Sum_probs=37.7
Q ss_pred HHHHHHH--hcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcccHHH
Q 045263 519 AISEIIW--DLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELL 572 (742)
Q Consensus 519 aI~~I~~--~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT~~L 572 (742)
.++.++. ++..+ .-++|.||+|||||..++..+......|..++|+.....+
T Consensus 48 ~LD~~Lg~GGi~~G--~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 48 AIDIATGVGGYPRG--RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL 101 (356)
T ss_dssp HHHHHTSSSSEETT--EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred HHHHHhccCCccCC--cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc
Confidence 3455554 33333 3678999999999998888887777778889888765544
No 224
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=84.22 E-value=0.2 Score=53.27 Aligned_cols=76 Identities=17% Similarity=0.220 Sum_probs=0.0
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhhccccCCc
Q 045263 560 GYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSAL 639 (742)
Q Consensus 560 g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~~v~~~~l 639 (742)
+.++++.++++.-++.+++.+.+. + ..+..+||+++..+|..+++.+.+|+.+|+|+|.. +...+.+.++
T Consensus 259 ~~~~lVf~~~~~~~~~l~~~L~~~----~-----~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~-~~~Gldi~~~ 328 (394)
T 1fuu_A 259 VTQAVIFCNTRRKVEELTTKLRND----K-----FTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDL-LARGIDVQQV 328 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcEEEEECCHHHHHHHHHHHHHc----C-----CeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECCh-hhcCCCcccC
Confidence 568999999999888887777653 3 67889999999999999999999999999999964 4457778888
Q ss_pred cEEEEe
Q 045263 640 RLAIVD 645 (742)
Q Consensus 640 ~LVIID 645 (742)
++||.-
T Consensus 329 ~~Vi~~ 334 (394)
T 1fuu_A 329 SLVINY 334 (394)
T ss_dssp ------
T ss_pred CEEEEe
Confidence 888753
No 225
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=83.93 E-value=1.8 Score=44.44 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=19.0
Q ss_pred CceEEEccCCChHHHHHHHHHHHH
Q 045263 533 MNRLLQGDVGCGKTVVAFLACMEV 556 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~ail~~ 556 (742)
.+++|.||+|+|||.++-..+...
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999998876554444
No 226
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.71 E-value=1.3 Score=48.95 Aligned_cols=39 Identities=21% Similarity=0.128 Sum_probs=26.8
Q ss_pred CCCCCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEccc
Q 045263 528 KQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPT 569 (742)
Q Consensus 528 ~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT 569 (742)
+-..|..+||+||+|+|||..+-..+-+. |...+.+...
T Consensus 202 g~~~prGiLL~GPPGtGKT~lakAiA~~~---~~~~~~v~~~ 240 (428)
T 4b4t_K 202 GIDPPRGVLLYGPPGTGKTMLVKAVANST---KAAFIRVNGS 240 (428)
T ss_dssp CCCCCCEEEEESCTTTTHHHHHHHHHHHH---TCEEEEEEGG
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEecc
Confidence 33445678999999999998876554433 6666655544
No 227
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=83.56 E-value=0.28 Score=55.13 Aligned_cols=79 Identities=18% Similarity=0.201 Sum_probs=55.9
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhhccccCC
Q 045263 559 SGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSA 638 (742)
Q Consensus 559 ~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~~v~~~~ 638 (742)
.+.++++.++++.-++.+++.+.+ .+ ..+..+||+++..+|..+++.+.+|+.+|+|+|. .+...+.+.+
T Consensus 356 ~~~~~LVF~~s~~~a~~l~~~L~~----~~-----~~v~~~hg~~~~~~R~~il~~f~~g~~~VLVaT~-~l~~GiDip~ 425 (508)
T 3fho_A 356 TIGQSIIFCKKKDTAEEIARRMTA----DG-----HTVACLTGNLEGAQRDAIMDSFRVGTSKVLVTTN-VIARGIDVSQ 425 (508)
T ss_dssp -CCCEEEBCSSTTTTTHHHHHHTT----TT-----CCCCEEC-----CTTGGGTHHHHSSSCCCCEECC------CCCTT
T ss_pred CCCcEEEEECCHHHHHHHHHHHHh----CC-----CcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEeCC-hhhcCCCccC
Confidence 467899999999988887776654 23 6788999999999999889999999999999997 4556888999
Q ss_pred ccEEEEeCC
Q 045263 639 LRLAIVDEQ 647 (742)
Q Consensus 639 l~LVIIDEa 647 (742)
+++||....
T Consensus 426 v~~VI~~~~ 434 (508)
T 3fho_A 426 VNLVVNYDM 434 (508)
T ss_dssp CCEEEC---
T ss_pred CCEEEEECC
Confidence 999985443
No 228
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=83.47 E-value=1.2 Score=43.30 Aligned_cols=45 Identities=20% Similarity=0.288 Sum_probs=31.7
Q ss_pred HHHHHHH-hcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcc
Q 045263 519 AISEIIW-DLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVP 568 (742)
Q Consensus 519 aI~~I~~-~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaP 568 (742)
.++.++. ++..+. -.+|.|++|+|||..+...+. ..+..++++.-
T Consensus 8 ~LD~~l~Ggi~~G~--~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~ 53 (220)
T 2cvh_A 8 SLDSLLGGGFAPGV--LTQVYGPYASGKTTLALQTGL---LSGKKVAYVDT 53 (220)
T ss_dssp HHHHHTTSSBCTTS--EEEEECSTTSSHHHHHHHHHH---HHCSEEEEEES
T ss_pred HHHHhhcCCCcCCE--EEEEECCCCCCHHHHHHHHHH---HcCCcEEEEEC
Confidence 4555554 444433 679999999999988766655 55777888753
No 229
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=82.93 E-value=1.4 Score=43.71 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=32.8
Q ss_pred CceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEc
Q 045263 533 MNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMV 567 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~ail~~l~~g~qvlila 567 (742)
.++++.+++|.|||-+++..+++++..|.+|+|+-
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQ 63 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQ 63 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 48899999999999999999999999999999993
No 230
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=82.92 E-value=1.6 Score=47.06 Aligned_cols=75 Identities=16% Similarity=0.238 Sum_probs=59.2
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEE-EEeCCCChHHHHHHHHHhhcCCccEEEec---hHHHhhcc
Q 045263 559 SGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIA-LLTGSTPVKQSRMIRKDLQTGDITLVIGT---HSLIAEKV 634 (742)
Q Consensus 559 ~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~-ll~G~~~~~er~~i~~~l~~G~~~IVVgT---~~~l~~~v 634 (742)
.+.++++.++++.-++.+++.+.+. + +.+. .+||. ++. ++.+.+|+.+|+|+| ...+...+
T Consensus 251 ~~~~~lVF~~~~~~~~~l~~~L~~~----~-----~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~Gi 315 (414)
T 3oiy_A 251 FRDGILIFAQTEEEGKELYEYLKRF----K-----FNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGV 315 (414)
T ss_dssp HCSSEEEEESSHHHHHHHHHHHHHT----T-----CCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCC
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHc----C-----CceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccC
Confidence 4689999999999999888887763 3 5676 77874 333 788999999999995 45566788
Q ss_pred ccCC-ccEEEEeCCc
Q 045263 635 EFSA-LRLAIVDEQQ 648 (742)
Q Consensus 635 ~~~~-l~LVIIDEaH 648 (742)
++.+ +++||.-..-
T Consensus 316 Dip~~v~~VI~~~~p 330 (414)
T 3oiy_A 316 DLPERIKYVIFWGTP 330 (414)
T ss_dssp CCTTTCCEEEEESCC
T ss_pred ccccccCEEEEECCC
Confidence 8999 9999975554
No 231
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=82.80 E-value=1.5 Score=48.75 Aligned_cols=66 Identities=11% Similarity=0.126 Sum_probs=48.0
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHH
Q 045263 512 LTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLK 582 (742)
Q Consensus 512 Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT~~La~Q~~~~l~~ 582 (742)
+|+. ..++.++.++..+. -.+|.|++|+|||..++..+......|..++|+.-. .-..|+..++..
T Consensus 181 ~TG~--~~LD~~lgGl~~G~--liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE-ms~~ql~~R~~~ 246 (444)
T 3bgw_A 181 PSGF--TELDRMTYGYKRRN--FVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE-MGKKENIKRLIV 246 (444)
T ss_dssp CCSC--HHHHHHHSSBCSSC--EEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS-SCTTHHHHHHHH
T ss_pred CCCc--HHHHhhcCCCCCCc--EEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC-CCHHHHHHHHHH
Confidence 4544 35777887776654 689999999999999998888888778888887644 334455555544
No 232
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=82.65 E-value=1.2 Score=45.70 Aligned_cols=23 Identities=39% Similarity=0.485 Sum_probs=18.2
Q ss_pred CCceEEEccCCChHHHHHHHHHH
Q 045263 532 PMNRLLQGDVGCGKTVVAFLACM 554 (742)
Q Consensus 532 ~~~~LL~a~TGSGKT~val~ail 554 (742)
+.++++.||+|+|||.++-..+.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~ 72 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAK 72 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999987754433
No 233
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=82.42 E-value=1.4 Score=56.65 Aligned_cols=43 Identities=19% Similarity=0.172 Sum_probs=39.3
Q ss_pred ceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcccHHHHHHH
Q 045263 534 NRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQH 576 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT~~La~Q~ 576 (742)
.+.+.||.|||||.+++..+.++...|..++|+.+..+|....
T Consensus 1433 ~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~ 1475 (1706)
T 3cmw_A 1433 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY 1475 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHH
Confidence 4789999999999999999999999999999999998887665
No 234
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=82.24 E-value=1 Score=41.35 Aligned_cols=19 Identities=26% Similarity=0.274 Sum_probs=15.9
Q ss_pred CCceEEEccCCChHHHHHH
Q 045263 532 PMNRLLQGDVGCGKTVVAF 550 (742)
Q Consensus 532 ~~~~LL~a~TGSGKT~val 550 (742)
+.++++.|++|+|||.++-
T Consensus 27 ~~~vll~G~~GtGKt~lA~ 45 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVAR 45 (143)
T ss_dssp SSCEEEEEETTCCHHHHHG
T ss_pred CCcEEEECCCCccHHHHHH
Confidence 3579999999999997653
No 235
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=82.17 E-value=0.6 Score=48.19 Aligned_cols=33 Identities=21% Similarity=0.220 Sum_probs=22.1
Q ss_pred ceEEEccCCChHHHHHHHHHHHHHhcCCeEEEE
Q 045263 534 NRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFM 566 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val~ail~~l~~g~qvlil 566 (742)
.+++.||+|+|||.++-..+......+...+.+
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~ 81 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRI 81 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEE
T ss_pred EEEEECCCCcCHHHHHHHHHHHHcCCCcceEEe
Confidence 689999999999988765544433333334433
No 236
>4ecq_A DNA polymerase ETA; transferase-DNA complex; HET: DNA DTP; 1.50A {Homo sapiens} PDB: 3mr2_A* 3mr4_A* 3mr5_A* 3si8_A* 4dl2_A* 4dl3_A* 4dl4_A* 4dl5_A* 4dl6_A* 4dl7_A* 3mr3_A* 4ecr_A* 4ecs_A* 4ect_A* 4ecu_A* 4ecv_A* 4ecw_A* 4ecx_A* 4ecy_A* 4ecz_A* ...
Probab=82.11 E-value=0.51 Score=52.36 Aligned_cols=36 Identities=19% Similarity=0.211 Sum_probs=30.4
Q ss_pred ccCCcCCCCCHHHHHH-HHhCCCCCHhHHhhcCCCcce
Q 045263 209 KCISCVPGLSKRLYHQ-LENCGFYTLRKLLHHFPRTYA 245 (742)
Q Consensus 209 ~~I~~LkGVG~k~~~~-L~klGI~Tv~DLL~~fPrrYe 245 (742)
.||..|.|||+++.+. |+++||+|+.||.. +|+...
T Consensus 253 lpv~~l~GiG~~~~~~lL~~lGI~TigdLa~-~~~~~L 289 (435)
T 4ecq_A 253 MPIRKIRSLGGKLGASVIEILGIEYMGELTQ-FTESQL 289 (435)
T ss_dssp CBGGGSTTCSSHHHHHHHHHHTCCBGGGGGG-SCHHHH
T ss_pred CCHHHhcCCCHHHHHHHHHHcCCCcHHHHhh-CCHHHH
Confidence 5999999999998665 89999999999875 466554
No 237
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=81.78 E-value=2.4 Score=51.98 Aligned_cols=90 Identities=10% Similarity=0.085 Sum_probs=64.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhh------------------hhccCCCC------------CcEEEEEeCCCChHHHH
Q 045263 560 GYQAAFMVPTELLATQHYEHLLKLL------------------DNMEEDKH------------KPKIALLTGSTPVKQSR 609 (742)
Q Consensus 560 g~qvlilaPT~~La~Q~~~~l~~~l------------------~~~~~~~~------------~i~V~ll~G~~~~~er~ 609 (742)
+.+++|.++++.-++++++.+.... ..+..... ...|+.+||+++..+|.
T Consensus 343 ~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~ 422 (1010)
T 2xgj_A 343 YNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKE 422 (1010)
T ss_dssp CCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHH
T ss_pred CCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHH
Confidence 4589999999999888877665410 00000000 01388999999999999
Q ss_pred HHHHHhhcCCccEEEechHHHhhccccCCccEEEEeCCcccc
Q 045263 610 MIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQRFG 651 (742)
Q Consensus 610 ~i~~~l~~G~~~IVVgT~~~l~~~v~~~~l~LVIIDEaHrfG 651 (742)
.+...+.+|.++|+|+|.. +...+.+....+ ||+...+|+
T Consensus 423 ~ve~~F~~G~ikVLVAT~~-la~GIDiP~~~v-VI~~~~kfd 462 (1010)
T 2xgj_A 423 VIEILFQEGFLKVLFATET-FSIGLNMPAKTV-VFTSVRKWD 462 (1010)
T ss_dssp HHHHHHHTTCCSEEEEEGG-GGGSTTCCBSEE-EESCSEEEC
T ss_pred HHHHHHhcCCCcEEEEehH-hhccCCCCCceE-EEeCCcccC
Confidence 9999999999999999964 445778888765 566555543
No 238
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.74 E-value=1.5 Score=48.89 Aligned_cols=41 Identities=24% Similarity=0.216 Sum_probs=27.2
Q ss_pred hcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEccc
Q 045263 526 DLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPT 569 (742)
Q Consensus 526 ~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT 569 (742)
.+.-..|..+||+||+|+|||..+-..+-+. |...+.+...
T Consensus 237 ~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~---~~~fi~vs~s 277 (467)
T 4b4t_H 237 TLGIDPPKGILLYGPPGTGKTLCARAVANRT---DATFIRVIGS 277 (467)
T ss_dssp HHTCCCCSEEEECSCTTSSHHHHHHHHHHHH---TCEEEEEEGG
T ss_pred HCCCCCCCceEeeCCCCCcHHHHHHHHHhcc---CCCeEEEEhH
Confidence 3334456789999999999998765544432 5555555443
No 239
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=81.70 E-value=7.7 Score=44.87 Aligned_cols=99 Identities=7% Similarity=0.001 Sum_probs=70.0
Q ss_pred cCCChHHHHHHHHHHHHH--hcCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhc
Q 045263 540 DVGCGKTVVAFLACMEVI--GSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQT 617 (742)
Q Consensus 540 ~TGSGKT~val~ail~~l--~~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~ 617 (742)
+..|||..+... ++..+ ..+.+++|.+.+...++.+.+.+.. .+ +.+..++|+++.++|..+.+.+.+
T Consensus 395 ~~~s~K~~~l~~-ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~----~g-----~~~~~l~G~~~~~~R~~~i~~F~~ 464 (644)
T 1z3i_X 395 PQLSGKMLVLDY-ILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRN----RR-----YLYVRLDGTMSIKKRAKIVERFNN 464 (644)
T ss_dssp GGGSHHHHHHHH-HHHHHHHHCCCEEEEEESCHHHHHHHHHHHHH----HT-----CCEEEECSSCCHHHHHHHHHHHHS
T ss_pred cccChHHHHHHH-HHHHHhhcCCCEEEEEEccHHHHHHHHHHHHH----CC-----CCEEEEeCCCCHHHHHHHHHHhcC
Confidence 345888765433 33333 3478999999998877766555443 34 678899999999999999999999
Q ss_pred CCcc--EEEechHHHhhccccCCccEEEEeCCc
Q 045263 618 GDIT--LVIGTHSLIAEKVEFSALRLAIVDEQQ 648 (742)
Q Consensus 618 G~~~--IVVgT~~~l~~~v~~~~l~LVIIDEaH 648 (742)
|+.. +++.+.......+.+.....||+=+.+
T Consensus 465 ~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~ 497 (644)
T 1z3i_X 465 PSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPD 497 (644)
T ss_dssp TTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCC
T ss_pred CCCCcEEEEEecccccCCcccccCCEEEEECCC
Confidence 8664 444444555567788888888875544
No 240
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=81.69 E-value=9.9 Score=34.88 Aligned_cols=34 Identities=12% Similarity=0.252 Sum_probs=24.9
Q ss_pred ccccCCcEEEEEEEEeecCCCceeEEeeceeeecCc
Q 045263 335 GKHKVGEFVCVSGKVRAMRSNNHYEMREYNIDVLKD 370 (742)
Q Consensus 335 ~~l~~G~~v~v~GKv~~~~~~~~~~m~~~~~e~l~~ 370 (742)
..|++|+.+.|.|+++.+++. .++.-..+..+++
T Consensus 83 ~~~~~g~yVrV~G~v~~f~g~--~qi~~~~ir~v~d 116 (136)
T 4gop_B 83 SEIRNNVYVRVLGTLKSFQNR--RSISSGHMRPVID 116 (136)
T ss_dssp CSCCTTCEEEEEEEEEEETTE--EEEEESEEEECSS
T ss_pred cccCCCCEEEEEEEEEEeCCE--EEEEEEEEEECCC
Confidence 679999999999999998754 4554444554544
No 241
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=81.59 E-value=3.3 Score=45.78 Aligned_cols=36 Identities=19% Similarity=0.092 Sum_probs=30.1
Q ss_pred CCceEEEccCCChHHHHHHHHHHHHHhc-CCeEEEEc
Q 045263 532 PMNRLLQGDVGCGKTVVAFLACMEVIGS-GYQAAFMV 567 (742)
Q Consensus 532 ~~~~LL~a~TGSGKT~val~ail~~l~~-g~qvlila 567 (742)
+..+++.|+.|+|||.++...+...... |++++++.
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd 136 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVS 136 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 4567888999999999988887777777 99998875
No 242
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=81.58 E-value=1.3 Score=47.49 Aligned_cols=50 Identities=24% Similarity=0.224 Sum_probs=37.4
Q ss_pred HHHHHHH--hcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcccH
Q 045263 519 AISEIIW--DLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTE 570 (742)
Q Consensus 519 aI~~I~~--~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT~ 570 (742)
.++.++. ++..+. ..+|.|++|||||..++..+......|..++|+.-..
T Consensus 48 ~LD~~Lg~GGl~~G~--iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~ 99 (349)
T 2zr9_A 48 SLDVALGIGGLPRGR--VIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH 99 (349)
T ss_dssp HHHHHTSSSSEETTS--EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred HHHHHhccCCccCCe--EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 3455554 443333 6899999999999999888888888888888886443
No 243
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=81.21 E-value=1.9 Score=43.59 Aligned_cols=21 Identities=29% Similarity=0.374 Sum_probs=17.2
Q ss_pred CceEEEccCCChHHHHHHHHH
Q 045263 533 MNRLLQGDVGCGKTVVAFLAC 553 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~ai 553 (742)
.+++|.|++|+|||.++-...
T Consensus 30 ~~vll~G~~GtGKt~la~~i~ 50 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLH 50 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEECCCCCcHHHHHHHHH
Confidence 589999999999998765443
No 244
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=81.15 E-value=3.8 Score=46.54 Aligned_cols=89 Identities=10% Similarity=0.078 Sum_probs=64.4
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCcc--EEEechHHHhhcccc
Q 045263 559 SGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDIT--LVIGTHSLIAEKVEF 636 (742)
Q Consensus 559 ~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~--IVVgT~~~l~~~v~~ 636 (742)
.+.+++|.++++.-|+.+++.|.+........+ .-.+..++|+.+. ++..+++.+++|+.+ +|+.|...+...+.+
T Consensus 438 ~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~-~~~~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDi 515 (590)
T 3h1t_A 438 RFAKTIVFCVDQEHADEMRRALNNLNSDLSRKH-PDYVARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGVDA 515 (590)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTC-TTSEEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTCCC
T ss_pred CCccEEEEECCHHHHHHHHHHHHHhhhhhhccC-CCeEEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCccc
Confidence 357999999999999999999987754321001 1236778888753 588888999997644 455454556668899
Q ss_pred CCccEEEEeCCcc
Q 045263 637 SALRLAIVDEQQR 649 (742)
Q Consensus 637 ~~l~LVIIDEaHr 649 (742)
.++.+||++..-.
T Consensus 516 p~v~~Vi~~~~~~ 528 (590)
T 3h1t_A 516 PTCKNVVLARVVN 528 (590)
T ss_dssp TTEEEEEEESCCC
T ss_pred hheeEEEEEecCC
Confidence 9999999977643
No 245
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.99 E-value=1.6 Score=48.28 Aligned_cols=39 Identities=23% Similarity=0.225 Sum_probs=27.0
Q ss_pred CCCCCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEccc
Q 045263 528 KQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPT 569 (742)
Q Consensus 528 ~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT 569 (742)
.-..|..+||+||+|+|||..+-..+-+. +...+.+...
T Consensus 212 Gi~~prGvLLyGPPGTGKTlLAkAiA~e~---~~~fi~v~~s 250 (437)
T 4b4t_I 212 GIKPPKGVILYGAPGTGKTLLAKAVANQT---SATFLRIVGS 250 (437)
T ss_dssp TCCCCSEEEEESSTTTTHHHHHHHHHHHH---TCEEEEEESG
T ss_pred CCCCCCCCceECCCCchHHHHHHHHHHHh---CCCEEEEEHH
Confidence 34446689999999999999775555433 6555555543
No 246
>1b22_A DNA repair protein RAD51; DNA binding, riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.60.4.1
Probab=80.62 E-value=0.37 Score=43.64 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=28.1
Q ss_pred ccCCcCC--CCCHHHHHHHHhCCCCCHhHHhhcCC
Q 045263 209 KCISCVP--GLSKRLYHQLENCGFYTLRKLLHHFP 241 (742)
Q Consensus 209 ~~I~~Lk--GVG~k~~~~L~klGI~Tv~DLL~~fP 241 (742)
.||..|+ |||+..+++|.+.|++|++++...=|
T Consensus 23 ~~I~~L~~~GIg~~~i~kL~eAG~~Tve~va~a~~ 57 (114)
T 1b22_A 23 QPISRLEQCGINANDVKKLEEAGFHTVEAVAYAPK 57 (114)
T ss_dssp CCHHHHHHTTCSHHHHHHHHTTCCSSGGGBTSSBH
T ss_pred ccHHHHHhcCCCHHHHHHHHHcCcCcHHHHHhCCH
Confidence 3667777 99999999999999999999976633
No 247
>1coo_A RNA polymerase alpha subunit; transcription regulation, nucleotidyl transferase; NMR {Escherichia coli} SCOP: a.60.3.1 PDB: 2jzb_A
Probab=80.40 E-value=0.66 Score=40.86 Aligned_cols=36 Identities=17% Similarity=0.254 Sum_probs=32.1
Q ss_pred cchhhhccCCcCCCCCHHHHHHHHhCCCCCHhHHhhc
Q 045263 203 IEPLLDKCISCVPGLSKRLYHQLENCGFYTLRKLLHH 239 (742)
Q Consensus 203 ~~~~L~~~I~~LkGVG~k~~~~L~klGI~Tv~DLL~~ 239 (742)
+...|..||..| +++.+..+.|++.||+||.||+.+
T Consensus 18 ~~~~l~~~Ie~L-~LSvRs~NcLkragI~Tv~dL~~~ 53 (98)
T 1coo_A 18 FDPILLRPVDDL-ELTVRSANCLKAEAIHYIGDLVQR 53 (98)
T ss_dssp CCHHHHSBGGGG-TCCTTTHHHHHTTTCCBHHHHHTS
T ss_pred HHHHhcCcHHHh-CCCHHHHHHHHHcCCCcHHHHHhC
Confidence 345678899999 599999999999999999999987
No 248
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=80.29 E-value=4.5 Score=47.36 Aligned_cols=77 Identities=12% Similarity=0.087 Sum_probs=62.7
Q ss_pred EEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhc--CCccEEEechHHHhhccccCCcc
Q 045263 563 AAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQT--GDITLVIGTHSLIAEKVEFSALR 640 (742)
Q Consensus 563 vlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~--G~~~IVVgT~~~l~~~v~~~~l~ 640 (742)
.+++++|+.-++++++.+.+. + ..+..+||+++..+|..+.+.+.+ |..+|+|+|.. +...+.+ ++.
T Consensus 323 ~iIf~~s~~~ie~la~~L~~~----g-----~~v~~lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi-~e~GlDi-~v~ 391 (677)
T 3rc3_A 323 DCIVCFSKNDIYSVSRQIEIR----G-----LESAVIYGSLPPGTKLAQAKKFNDPNDPCKILVATDA-IGMGLNL-SIR 391 (677)
T ss_dssp EEEECSSHHHHHHHHHHHHHT----T-----CCCEEECTTSCHHHHHHHHHHHHCTTSSCCEEEECGG-GGSSCCC-CBS
T ss_pred CEEEEcCHHHHHHHHHHHHhc----C-----CCeeeeeccCCHHHHHHHHHHHHccCCCeEEEEeCcH-HHCCcCc-Ccc
Confidence 456688888788777777763 3 679999999999999999999998 88999999964 4457788 899
Q ss_pred EEEEeCCccc
Q 045263 641 LAIVDEQQRF 650 (742)
Q Consensus 641 LVIIDEaHrf 650 (742)
+||.-...++
T Consensus 392 ~VI~~~~~k~ 401 (677)
T 3rc3_A 392 RIIFYSLIKP 401 (677)
T ss_dssp EEEESCSBC-
T ss_pred EEEECCcccc
Confidence 9999888765
No 249
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=80.09 E-value=1.6 Score=44.36 Aligned_cols=26 Identities=27% Similarity=0.263 Sum_probs=20.2
Q ss_pred CCCCCceEEEccCCChHHHHHHHHHH
Q 045263 529 QPVPMNRLLQGDVGCGKTVVAFLACM 554 (742)
Q Consensus 529 ~~~~~~~LL~a~TGSGKT~val~ail 554 (742)
...+.++||.||+|+|||.++-..+.
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~ 86 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAE 86 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHH
Confidence 44556899999999999988755444
No 250
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=79.62 E-value=1.6 Score=44.12 Aligned_cols=36 Identities=22% Similarity=0.259 Sum_probs=30.6
Q ss_pred CCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEc
Q 045263 532 PMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMV 567 (742)
Q Consensus 532 ~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlila 567 (742)
..++++.++.|+|||..++..+......|+.++++.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d 41 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGV 41 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEE
Confidence 368899999999999999988888888898886543
No 251
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=79.44 E-value=1.9 Score=45.53 Aligned_cols=43 Identities=19% Similarity=0.201 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHHhcCCCC--CCceEEEccCCChHHHHHHHHHHH
Q 045263 513 TSSQLSAISEIIWDLKQPV--PMNRLLQGDVGCGKTVVAFLACME 555 (742)
Q Consensus 513 t~~Q~~aI~~I~~~~~~~~--~~~~LL~a~TGSGKT~val~ail~ 555 (742)
.+.+.+++..+......+. +..+||.||+|+|||.++-..+..
T Consensus 49 ~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~ 93 (368)
T 3uk6_A 49 QLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQA 93 (368)
T ss_dssp CHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 4444455444444333322 247999999999999877655443
No 252
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=79.37 E-value=1.4 Score=46.44 Aligned_cols=59 Identities=12% Similarity=0.138 Sum_probs=37.5
Q ss_pred HHHHHH-hcCCCCCCceEEEccCCChHHHHHHHHHHHHHhc------CCeEEEEcccHHH-HHHHHHHH
Q 045263 520 ISEIIW-DLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGS------GYQAAFMVPTELL-ATQHYEHL 580 (742)
Q Consensus 520 I~~I~~-~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~------g~qvlilaPT~~L-a~Q~~~~l 580 (742)
++.++. ++..+ ...+|.|++|+|||..++..+..+... +..++|+.-...+ .+++.+.+
T Consensus 96 LD~~L~GGl~~G--~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~ 162 (324)
T 2z43_A 96 LDGLLAGGIETR--TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMA 162 (324)
T ss_dssp HHHHTTTSEETT--SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHH
T ss_pred HHHhcCCCCCCC--cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHH
Confidence 444442 33333 368999999999999988877765444 5678887644322 34444433
No 253
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=79.02 E-value=1.8 Score=47.28 Aligned_cols=41 Identities=20% Similarity=0.235 Sum_probs=29.6
Q ss_pred CceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcccHHHH
Q 045263 533 MNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLA 573 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT~~La 573 (742)
.+.++.|+||||||...-..+...+..|..++++=|.-++.
T Consensus 54 ~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkge~~ 94 (437)
T 1e9r_A 54 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDML 94 (437)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCchh
Confidence 47899999999999986445555566676666666655553
No 254
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=78.99 E-value=3.9 Score=47.26 Aligned_cols=71 Identities=14% Similarity=0.083 Sum_probs=55.9
Q ss_pred hcCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhhccccC
Q 045263 558 GSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFS 637 (742)
Q Consensus 558 ~~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~~v~~~ 637 (742)
..+.+++|.++|+.-++.+++.|.+. + +++..+||. ++..+++.+.+|+.+|+|+|.. +...+.+.
T Consensus 353 ~~~~~~LVF~~s~~~a~~l~~~L~~~----g-----~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv-~~rGiDi~ 418 (618)
T 2whx_A 353 DYQGKTVWFVPSIKAGNDIANCLRKS----G-----KRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDI-SEMGANFR 418 (618)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHHT----T-----CCEEEECTT----THHHHTTHHHHSCCSEEEECGG-GGTTCCCC
T ss_pred hCCCCEEEEECChhHHHHHHHHHHHc----C-----CcEEEEChH----HHHHHHHhhcCCCcEEEEECcH-HHcCcccC
Confidence 35789999999999999998888764 3 678899984 5666778889999999999964 44466664
Q ss_pred CccEEE
Q 045263 638 ALRLAI 643 (742)
Q Consensus 638 ~l~LVI 643 (742)
+.+||
T Consensus 419 -v~~VI 423 (618)
T 2whx_A 419 -AGRVI 423 (618)
T ss_dssp -CSEEE
T ss_pred -ceEEE
Confidence 77763
No 255
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=78.87 E-value=2.3 Score=42.48 Aligned_cols=34 Identities=38% Similarity=0.509 Sum_probs=22.7
Q ss_pred CCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEc
Q 045263 531 VPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMV 567 (742)
Q Consensus 531 ~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlila 567 (742)
.+..++|.||+|+|||.++-..+... +...+.+.
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~~~ 71 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA---QVPFLAMA 71 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH---TCCEEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEec
Confidence 34578999999999998765444322 44444443
No 256
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=78.70 E-value=3.2 Score=45.74 Aligned_cols=71 Identities=17% Similarity=0.128 Sum_probs=55.5
Q ss_pred hcCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhhccccC
Q 045263 558 GSGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFS 637 (742)
Q Consensus 558 ~~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~~v~~~ 637 (742)
..+.++++.+||+.-++++++.+.+. + +.+..+||... ..+++.+.+|+.+|+|+|. .+...+.+.
T Consensus 186 ~~~~~~lVF~~s~~~a~~l~~~L~~~----g-----~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~-v~~~GiDip 251 (451)
T 2jlq_A 186 DYQGKTVWFVPSIKAGNDIANCLRKS----G-----KRVIQLSRKTF----DTEYPKTKLTDWDFVVTTD-ISEMGANFR 251 (451)
T ss_dssp HCCSCEEEECSSHHHHHHHHHHHHTT----T-----CCEEEECTTTH----HHHGGGGGSSCCSEEEECG-GGGSSCCCC
T ss_pred hCCCCEEEEcCCHHHHHHHHHHHHHc----C-----CeEEECCHHHH----HHHHHhhccCCceEEEECC-HHHhCcCCC
Confidence 34679999999999999888887653 3 67888998654 3566788999999999995 445577777
Q ss_pred CccEEE
Q 045263 638 ALRLAI 643 (742)
Q Consensus 638 ~l~LVI 643 (742)
+ .+||
T Consensus 252 ~-~~VI 256 (451)
T 2jlq_A 252 A-GRVI 256 (451)
T ss_dssp C-SEEE
T ss_pred C-CEEE
Confidence 7 7776
No 257
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=78.42 E-value=1.1 Score=44.14 Aligned_cols=25 Identities=24% Similarity=0.228 Sum_probs=19.7
Q ss_pred CCceEEEccCCChHHHHHHHHHHHH
Q 045263 532 PMNRLLQGDVGCGKTVVAFLACMEV 556 (742)
Q Consensus 532 ~~~~LL~a~TGSGKT~val~ail~~ 556 (742)
+|-.++.|++|||||..+...+...
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~~ 29 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMAND 29 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4678999999999999876554443
No 258
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=77.35 E-value=27 Score=42.59 Aligned_cols=83 Identities=16% Similarity=0.151 Sum_probs=62.1
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhh-----------------------------------hhccCCCCCcEEEEEeCCCC
Q 045263 560 GYQAAFMVPTELLATQHYEHLLKLL-----------------------------------DNMEEDKHKPKIALLTGSTP 604 (742)
Q Consensus 560 g~qvlilaPT~~La~Q~~~~l~~~l-----------------------------------~~~~~~~~~i~V~ll~G~~~ 604 (742)
..++++.++++.-+++.++.+.+.. ..+. ..+..+||+++
T Consensus 336 ~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~-----~gi~~~H~gl~ 410 (997)
T 4a4z_A 336 LLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLE-----RGIAVHHGGLL 410 (997)
T ss_dssp CCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHT-----TTEEEECTTSC
T ss_pred CCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhh-----cCeeeecCCCC
Confidence 4689999999988887776653310 0011 24889999999
Q ss_pred hHHHHHHHHHhhcCCccEEEechHHHhhccccCCccEEEEeCCcc
Q 045263 605 VKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAIVDEQQR 649 (742)
Q Consensus 605 ~~er~~i~~~l~~G~~~IVVgT~~~l~~~v~~~~l~LVIIDEaHr 649 (742)
..+|..+...+.+|..+|+|+|... ...+.+.+ ..||+.....
T Consensus 411 ~~~R~~v~~~F~~G~~kVLvAT~~~-a~GIDiP~-~~VVi~~~~k 453 (997)
T 4a4z_A 411 PIVKELIEILFSKGFIKVLFATETF-AMGLNLPT-RTVIFSSIRK 453 (997)
T ss_dssp HHHHHHHHHHHHTTCCSEEEECTHH-HHSCCCCC-SEEEESCSEE
T ss_pred HHHHHHHHHHHHCCCCcEEEEchHh-hCCCCCCC-ceEEEecccc
Confidence 9999999999999999999999753 44778888 6666654444
No 259
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=77.28 E-value=2 Score=43.69 Aligned_cols=34 Identities=29% Similarity=0.303 Sum_probs=22.8
Q ss_pred CCCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEE
Q 045263 530 PVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFM 566 (742)
Q Consensus 530 ~~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlil 566 (742)
..+..++|.||+|+|||.++-..+.. .+...+.+
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~---~~~~~~~v 82 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATE---TNATFIRV 82 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHH---TTCEEEEE
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHH---hCCCEEEE
Confidence 34568999999999999876544332 24444444
No 260
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=77.20 E-value=2.1 Score=45.62 Aligned_cols=23 Identities=39% Similarity=0.419 Sum_probs=18.6
Q ss_pred CCceEEEccCCChHHHHHHHHHH
Q 045263 532 PMNRLLQGDVGCGKTVVAFLACM 554 (742)
Q Consensus 532 ~~~~LL~a~TGSGKT~val~ail 554 (742)
+.++|+.||+|+|||.++-..+.
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~ 73 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLAR 73 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 45899999999999997755443
No 261
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=77.16 E-value=1.4 Score=46.20 Aligned_cols=39 Identities=26% Similarity=0.205 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHH
Q 045263 516 QLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACM 554 (742)
Q Consensus 516 Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail 554 (742)
|..++..+...+..+...++++.||+|+|||.++-..+-
T Consensus 42 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~ 80 (353)
T 1sxj_D 42 QDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTK 80 (353)
T ss_dssp CCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 445556666655555444699999999999987654443
No 262
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=77.06 E-value=1.9 Score=45.49 Aligned_cols=40 Identities=23% Similarity=0.154 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHH
Q 045263 516 QLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACME 555 (742)
Q Consensus 516 Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~ 555 (742)
|..++..+......+...+.++.||+|+|||..+-..+-.
T Consensus 30 ~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~ 69 (340)
T 1sxj_C 30 QNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALARE 69 (340)
T ss_dssp CHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 5566666655554544335899999999999877555443
No 263
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ...
Probab=76.88 E-value=1.3 Score=47.33 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=27.1
Q ss_pred cCCcCCCCCHHHHHHHHhCCCCCHhHHhhc
Q 045263 210 CISCVPGLSKRLYHQLENCGFYTLRKLLHH 239 (742)
Q Consensus 210 ~I~~LkGVG~k~~~~L~klGI~Tv~DLL~~ 239 (742)
.+..++||||+++++|-+.||.|++||...
T Consensus 99 ~l~~V~GiGpk~a~~l~~~Gi~tledL~~a 128 (335)
T 2fmp_A 99 FLTRVSGIGPSAARKFVDEGIKTLEDLRKN 128 (335)
T ss_dssp HHTTSTTCCHHHHHHHHHTTCCSHHHHHTC
T ss_pred HHhCCCCCCHHHHHHHHHcCCCCHHHHHHh
Confidence 567799999999999977799999999985
No 264
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=76.69 E-value=1.7 Score=45.05 Aligned_cols=35 Identities=26% Similarity=0.343 Sum_probs=24.6
Q ss_pred CCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcc
Q 045263 531 VPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVP 568 (742)
Q Consensus 531 ~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaP 568 (742)
.|..+||+||+|+|||.++-..+... |..++.+..
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~ 69 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM---GINPIMMSA 69 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH---TCCCEEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeH
Confidence 34578999999999998876554433 555555543
No 265
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=76.56 E-value=1.9 Score=40.14 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=21.5
Q ss_pred CceEEEccCCChHHHHHHHHHHHHHhcCCeEEE
Q 045263 533 MNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAF 565 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~ail~~l~~g~qvli 565 (742)
..++|.|++|+|||..+-..+-.....|.++++
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~ 69 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAY 69 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEE
Confidence 378999999999998765544433333433333
No 266
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=76.48 E-value=12 Score=46.30 Aligned_cols=83 Identities=11% Similarity=0.070 Sum_probs=59.7
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhhhhccCC------------------CC------------CcEEEEEeCCCChHHHH
Q 045263 560 GYQAAFMVPTELLATQHYEHLLKLLDNMEED------------------KH------------KPKIALLTGSTPVKQSR 609 (742)
Q Consensus 560 g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~------------------~~------------~i~V~ll~G~~~~~er~ 609 (742)
+.+++|.++++.-+++++..+....-..... .. ...|+.+||+++..+|.
T Consensus 441 ~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~ 520 (1108)
T 3l9o_A 441 YNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKE 520 (1108)
T ss_dssp CCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHH
T ss_pred CCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHH
Confidence 4689999999999998887765421110000 00 01289999999999999
Q ss_pred HHHHHhhcCCccEEEechHHHhhccccCCccEEE
Q 045263 610 MIRKDLQTGDITLVIGTHSLIAEKVEFSALRLAI 643 (742)
Q Consensus 610 ~i~~~l~~G~~~IVVgT~~~l~~~v~~~~l~LVI 643 (742)
.+...+.+|..+|+|+|.. +...+.+.++.+||
T Consensus 521 ~v~~~F~~G~ikVLVAT~v-la~GIDiP~v~~VI 553 (1108)
T 3l9o_A 521 VIEILFQEGFLKVLFATET-FSIGLNMPAKTVVF 553 (1108)
T ss_dssp HHHHHHHHTCCCEEEEESC-CCSCCCC--CEEEE
T ss_pred HHHHHHhCCCCeEEEECcH-HhcCCCCCCceEEE
Confidence 9999999999999999964 34467788888855
No 267
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=76.34 E-value=34 Score=38.47 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=29.7
Q ss_pred CCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcc
Q 045263 532 PMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVP 568 (742)
Q Consensus 532 ~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaP 568 (742)
+..+++.|.+|+|||.++...+......|.+++++..
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 4467899999999999887777666677888888875
No 268
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=76.04 E-value=2.8 Score=43.10 Aligned_cols=48 Identities=10% Similarity=0.131 Sum_probs=33.2
Q ss_pred HHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhc-CCeEEEEcc
Q 045263 519 AISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGS-GYQAAFMVP 568 (742)
Q Consensus 519 aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~-g~qvlilaP 568 (742)
+++.+.-++..+. -++|.|++|+|||..+...+...... |..++++..
T Consensus 24 ~Ld~i~~~l~~G~--~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 24 GINDKTLGARGGE--VIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp THHHHHCSBCTTC--EEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred HHHHHhcCCCCCe--EEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 4566665555543 67899999999998876665555444 667877653
No 269
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=75.81 E-value=1.3 Score=46.41 Aligned_cols=35 Identities=14% Similarity=0.278 Sum_probs=29.9
Q ss_pred ccCCcCCCCCHHHHHHHHhCCCCCHhHHhhcCCCc
Q 045263 209 KCISCVPGLSKRLYHQLENCGFYTLRKLLHHFPRT 243 (742)
Q Consensus 209 ~~I~~LkGVG~k~~~~L~klGI~Tv~DLL~~fPrr 243 (742)
.+|..|+|+++..+++|++.||+|++|++..-|..
T Consensus 3 ~~~~~l~gi~~~~~~kL~~~gi~t~~~~~~~~~~~ 37 (322)
T 2i1q_A 3 DNLTDLPGVGPSTAEKLVEAGYIDFMKIATATVGE 37 (322)
T ss_dssp --CTTSTTCCHHHHHHHHHHTCCSHHHHHTCCHHH
T ss_pred ccHhhcCCCCHHHHHHHHHcCCCcHHHHHhCCHHH
Confidence 47889999999999999999999999999876543
No 270
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=75.77 E-value=1.5 Score=48.56 Aligned_cols=71 Identities=17% Similarity=0.133 Sum_probs=53.6
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhhccccCC
Q 045263 559 SGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSA 638 (742)
Q Consensus 559 ~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~~v~~~~ 638 (742)
.+.+++|.+|++.-++.+++.+.+. + +.+..++|. ++..+++.+.+|+.+|+|+|.. +...+.+.+
T Consensus 189 ~~~~~LVF~~s~~~~~~l~~~L~~~----g-----~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v-~~~GiDip~ 254 (459)
T 2z83_A 189 YAGKTVWFVASVKMGNEIAMCLQRA----G-----KKVIQLNRK----SYDTEYPKCKNGDWDFVITTDI-SEMGANFGA 254 (459)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHT----T-----CCEEEESTT----CCCCCGGGSSSCCCSEEEESSC-C---CCCSC
T ss_pred cCCCEEEEeCChHHHHHHHHHHHhc----C-----CcEEecCHH----HHHHHHhhccCCCceEEEECCh-HHhCeecCC
Confidence 4789999999999999988888764 3 678899985 4445666788999999999953 444677777
Q ss_pred ccEEEE
Q 045263 639 LRLAIV 644 (742)
Q Consensus 639 l~LVII 644 (742)
.+||-
T Consensus 255 -~~VI~ 259 (459)
T 2z83_A 255 -SRVID 259 (459)
T ss_dssp -SEEEE
T ss_pred -CEEEE
Confidence 66663
No 271
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=74.80 E-value=2.5 Score=43.89 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=19.1
Q ss_pred CCCCceEEEccCCChHHHHHHHHHH
Q 045263 530 PVPMNRLLQGDVGCGKTVVAFLACM 554 (742)
Q Consensus 530 ~~~~~~LL~a~TGSGKT~val~ail 554 (742)
..+..++|.||+|+|||.++-..+-
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~ 71 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIAN 71 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHH
T ss_pred CCCceEEEECCCCcCHHHHHHHHHH
Confidence 3445799999999999987754443
No 272
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=74.62 E-value=11 Score=41.51 Aligned_cols=35 Identities=26% Similarity=0.266 Sum_probs=27.4
Q ss_pred CceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEc
Q 045263 533 MNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMV 567 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~ail~~l~~g~qvlila 567 (742)
..+.+.|+.|+|||.++...+......|.+++++.
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd 133 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEee
Confidence 35678899999999987776666666688888775
No 273
>2bcq_A DNA polymerase lambda; misalignment, extrahelical, mutagenesis, mutation, deletion, streisinger, slippage, transferase, lyase/DNA complex; HET: DNA; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1xsl_A* 2bcr_A* 2bcs_A* 2bcu_A* 2bcv_A* 2gws_A* 3c5g_A* 3c5f_A* 2pfn_A* 1xsp_A* 1xsn_A* 2pfo_A* 2pfp_A* 2pfq_A* 3hw8_A* 3hwt_A* 1rzt_A* 3hx0_A* 3mdc_A* 3mda_A* ...
Probab=74.05 E-value=1.8 Score=46.35 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=25.0
Q ss_pred CcCCCCCHHHHHHHHhCCCCCHhHHhhc
Q 045263 212 SCVPGLSKRLYHQLENCGFYTLRKLLHH 239 (742)
Q Consensus 212 ~~LkGVG~k~~~~L~klGI~Tv~DLL~~ 239 (742)
..++||||+++++|-+.||.|++||...
T Consensus 99 ~~v~GiG~k~a~~l~~~Gi~tledL~~a 126 (335)
T 2bcq_A 99 SNIWGAGTKTAQMWYQQGFRSLEDIRSQ 126 (335)
T ss_dssp HTSTTCCHHHHHHHHHTTCCSHHHHHHH
T ss_pred hcCCCcCHHHHHHHHHcCCCCHHHHHHH
Confidence 4689999999999977799999999864
No 274
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=73.95 E-value=2 Score=43.35 Aligned_cols=26 Identities=35% Similarity=0.443 Sum_probs=19.3
Q ss_pred CCCCCceEEEccCCChHHHHHHHHHH
Q 045263 529 QPVPMNRLLQGDVGCGKTVVAFLACM 554 (742)
Q Consensus 529 ~~~~~~~LL~a~TGSGKT~val~ail 554 (742)
...+..++|.||+|+|||.++-..+.
T Consensus 41 ~~~~~~vll~G~~GtGKT~la~~la~ 66 (268)
T 2r62_A 41 AKIPKGVLLVGPPGTGKTLLAKAVAG 66 (268)
T ss_dssp CCCCSCCCCBCSSCSSHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCcHHHHHHHHHH
Confidence 33445789999999999987754433
No 275
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=73.85 E-value=1.4 Score=46.04 Aligned_cols=19 Identities=32% Similarity=0.300 Sum_probs=16.2
Q ss_pred ceEEEccCCChHHHHHHHH
Q 045263 534 NRLLQGDVGCGKTVVAFLA 552 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val~a 552 (742)
++++.||+|+|||..+-..
T Consensus 48 ~vll~G~pGtGKT~la~~l 66 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTL 66 (331)
T ss_dssp CEEEESCCCHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHH
Confidence 7899999999999876543
No 276
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=73.35 E-value=3 Score=43.56 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=17.8
Q ss_pred CCceEEEccCCChHHHHHHHHH
Q 045263 532 PMNRLLQGDVGCGKTVVAFLAC 553 (742)
Q Consensus 532 ~~~~LL~a~TGSGKT~val~ai 553 (742)
+.+++|.|++|+|||.++-...
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~ 46 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALH 46 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHH
T ss_pred CCcEEEECCCCchHHHHHHHHH
Confidence 4589999999999998765443
No 277
>2ihm_A POL MU, DNA polymerase MU; helix-turn-helix, transferase/DNA complex; HET: DNA D3T; 2.40A {Mus musculus}
Probab=73.22 E-value=1.5 Score=47.41 Aligned_cols=28 Identities=21% Similarity=0.210 Sum_probs=25.4
Q ss_pred cCCcCCCCCHHHHHHHHhCCCCCHhHHh
Q 045263 210 CISCVPGLSKRLYHQLENCGFYTLRKLL 237 (742)
Q Consensus 210 ~I~~LkGVG~k~~~~L~klGI~Tv~DLL 237 (742)
.+..++|||||++++|-+.||.|++||.
T Consensus 103 ~l~~I~GvG~kta~~l~~~Gi~tledL~ 130 (360)
T 2ihm_A 103 LFTQVFGVGVKTANRWYQEGLRTLDELR 130 (360)
T ss_dssp HHHTSTTCCHHHHHHHHHTTCCSHHHHH
T ss_pred HHhCCCCCCHHHHHHHHHcCCCCHHHHH
Confidence 4567999999999999777999999999
No 278
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=72.93 E-value=3.8 Score=42.77 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=17.8
Q ss_pred CCCceEEEccCCChHHHHHHHH
Q 045263 531 VPMNRLLQGDVGCGKTVVAFLA 552 (742)
Q Consensus 531 ~~~~~LL~a~TGSGKT~val~a 552 (742)
.+.+++|.||+|+|||.++-..
T Consensus 54 ~~~~vll~G~~GtGKT~la~~i 75 (338)
T 3pfi_A 54 CLDHILFSGPAGLGKTTLANII 75 (338)
T ss_dssp CCCCEEEECSTTSSHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHH
Confidence 3457999999999999876544
No 279
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=72.78 E-value=3.3 Score=41.49 Aligned_cols=23 Identities=35% Similarity=0.533 Sum_probs=18.0
Q ss_pred CCCceEEEccCCChHHHHHHHHH
Q 045263 531 VPMNRLLQGDVGCGKTVVAFLAC 553 (742)
Q Consensus 531 ~~~~~LL~a~TGSGKT~val~ai 553 (742)
.+..++|.||+|+|||.++-..+
T Consensus 44 ~~~~vll~G~~GtGKT~la~~la 66 (257)
T 1lv7_A 44 IPKGVLMVGPPGTGKTLLAKAIA 66 (257)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHH
T ss_pred CCCeEEEECcCCCCHHHHHHHHH
Confidence 34578999999999998765443
No 280
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=72.78 E-value=3.4 Score=43.19 Aligned_cols=36 Identities=22% Similarity=0.234 Sum_probs=27.4
Q ss_pred CCceEEEccCCChHHHHHHHHHHHHH-hcCCeEEEEc
Q 045263 532 PMNRLLQGDVGCGKTVVAFLACMEVI-GSGYQAAFMV 567 (742)
Q Consensus 532 ~~~~LL~a~TGSGKT~val~ail~~l-~~g~qvlila 567 (742)
+..+++.|++|+|||.++...+.... ..|.+++++.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 44788999999999988766665554 3687887774
No 281
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=72.46 E-value=4.2 Score=38.56 Aligned_cols=35 Identities=26% Similarity=0.309 Sum_probs=25.9
Q ss_pred CCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEE
Q 045263 532 PMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFM 566 (742)
Q Consensus 532 ~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlil 566 (742)
++.+++.|+.|||||.++-......-..|..+.++
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~ 47 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL 47 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 45789999999999998766555544456666655
No 282
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=72.20 E-value=17 Score=37.42 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=23.8
Q ss_pred ccccCCcEEEEEEEEeecCCCceeEEeeceeeecC
Q 045263 335 GKHKVGEFVCVSGKVRAMRSNNHYEMREYNIDVLK 369 (742)
Q Consensus 335 ~~l~~G~~v~v~GKv~~~~~~~~~~m~~~~~e~l~ 369 (742)
..|++|+.|.|.|+++.+++. .|+.-..+..++
T Consensus 118 ~~~~~G~yVrV~G~v~~f~g~--~qi~i~~ir~v~ 150 (270)
T 2pi2_A 118 TVVPPETYVKVAGHLRSFQNK--KSLVAFKIMPLE 150 (270)
T ss_dssp CCCCTTCEEEEEEEEEEETTE--EEEEEEEEEECS
T ss_pred hcCCCCCEEEEEEEEEecCCe--eEEEEEEEEecC
Confidence 568999999999999998754 554433444443
No 283
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=72.01 E-value=2.4 Score=50.10 Aligned_cols=41 Identities=27% Similarity=0.301 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHH
Q 045263 515 SQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACME 555 (742)
Q Consensus 515 ~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~ 555 (742)
.|...+..+...+.+..+.++||.||+|+|||.++-..+..
T Consensus 184 G~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~ 224 (758)
T 3pxi_A 184 GRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQ 224 (758)
T ss_dssp CCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHH
T ss_pred CchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 35555666655554555568999999999999987555444
No 284
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=71.00 E-value=5.8 Score=49.04 Aligned_cols=76 Identities=16% Similarity=0.228 Sum_probs=60.5
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEE-EEeCCCChHHHHHHHHHhhcCCccEEEec---hHHHhhcc
Q 045263 559 SGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIA-LLTGSTPVKQSRMIRKDLQTGDITLVIGT---HSLIAEKV 634 (742)
Q Consensus 559 ~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~-ll~G~~~~~er~~i~~~l~~G~~~IVVgT---~~~l~~~v 634 (742)
.+.+++|.+|++.-++.+++.+... + +.+. .+||. +.. ++.+.+|+.+|+|+| ...+...+
T Consensus 308 ~~~~~LVF~~s~~~a~~l~~~L~~~----g-----~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~TdvlarGI 372 (1104)
T 4ddu_A 308 FRDGILIFAQTEEEGKELYEYLKRF----K-----FNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKLTRGV 372 (1104)
T ss_dssp HCSSEEEEESSSHHHHHHHHHHHHT----T-----CCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHHCCSC
T ss_pred cCCCEEEEECcHHHHHHHHHHHHhC----C-----CCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCeeEecC
Confidence 3689999999999999888877763 3 6777 78882 444 888999999999995 46677789
Q ss_pred ccCC-ccEEEEeCCcc
Q 045263 635 EFSA-LRLAIVDEQQR 649 (742)
Q Consensus 635 ~~~~-l~LVIIDEaHr 649 (742)
.+.+ +++||.=..-+
T Consensus 373 Dip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 373 DLPERIKYVIFWGTPS 388 (1104)
T ss_dssp CCTTTCCEEEEESCCE
T ss_pred cCCCCCCEEEEECCCC
Confidence 9999 99999765554
No 285
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=70.80 E-value=2.1 Score=45.87 Aligned_cols=35 Identities=23% Similarity=0.396 Sum_probs=31.6
Q ss_pred ccCCcCCCCCHHHHHHHHhCCCCCHhHHhhcCCCc
Q 045263 209 KCISCVPGLSKRLYHQLENCGFYTLRKLLHHFPRT 243 (742)
Q Consensus 209 ~~I~~LkGVG~k~~~~L~klGI~Tv~DLL~~fPrr 243 (742)
.+|..|+||++..+++|++.||+|++|++..=|+.
T Consensus 35 ~~l~~l~Gi~~~~~~kL~~ag~~t~~~~~~~~~~~ 69 (349)
T 1pzn_A 35 RSIEDLPGVGPATAEKLREAGYDTLEAIAVASPIE 69 (349)
T ss_dssp CCSSCCTTCCHHHHHHHHTTTCCSHHHHHTCCHHH
T ss_pred ccHHHcCCCCHHHHHHHHHcCCCcHHHHHhCCHHH
Confidence 48999999999999999999999999999876654
No 286
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=70.77 E-value=3.1 Score=40.85 Aligned_cols=35 Identities=14% Similarity=0.130 Sum_probs=25.4
Q ss_pred ceEEEccCCChHHHHHHHHHHHHHh------cCCeEEEEcc
Q 045263 534 NRLLQGDVGCGKTVVAFLACMEVIG------SGYQAAFMVP 568 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val~ail~~l~------~g~qvlilaP 568 (742)
..+|.||+|+|||..+...+...+. .+..++++.-
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~ 66 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDT 66 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEEC
Confidence 6799999999999988776664333 2456777653
No 287
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=70.63 E-value=5.9 Score=37.91 Aligned_cols=22 Identities=36% Similarity=0.448 Sum_probs=17.2
Q ss_pred CceEEEccCCChHHHHHHHHHH
Q 045263 533 MNRLLQGDVGCGKTVVAFLACM 554 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~ail 554 (742)
..++|.||+|+|||..+-..+.
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999987654443
No 288
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=70.61 E-value=1.8 Score=39.87 Aligned_cols=20 Identities=35% Similarity=0.346 Sum_probs=16.9
Q ss_pred CceEEEccCCChHHHHHHHH
Q 045263 533 MNRLLQGDVGCGKTVVAFLA 552 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~a 552 (742)
|.++|.|++|||||.++-..
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 56899999999999887554
No 289
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=70.57 E-value=3.2 Score=44.31 Aligned_cols=34 Identities=29% Similarity=0.311 Sum_probs=23.4
Q ss_pred CCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEc
Q 045263 531 VPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMV 567 (742)
Q Consensus 531 ~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlila 567 (742)
.+..+||.||+|+|||.++-..+.. .+...+.+-
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~---~~~~~~~i~ 149 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQ---SGATFFSIS 149 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHH---TTCEEEEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHH---cCCeEEEEe
Confidence 3468999999999999887554432 255555443
No 290
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=70.55 E-value=4.1 Score=43.84 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=26.8
Q ss_pred CceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcc
Q 045263 533 MNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVP 568 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaP 568 (742)
.+.++.|++|||||...-..+......|.+++++=|
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~ 71 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDP 71 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEES
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 478999999999998876666666666666555543
No 291
>1jms_A Terminal deoxynucleotidyltransferase; polymerase; 2.36A {Mus musculus} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1kdh_A* 1kej_A*
Probab=70.51 E-value=1.9 Score=47.02 Aligned_cols=29 Identities=24% Similarity=0.296 Sum_probs=25.9
Q ss_pred cCCcCCCCCHHHHHHHHhCCCCCHhHHhh
Q 045263 210 CISCVPGLSKRLYHQLENCGFYTLRKLLH 238 (742)
Q Consensus 210 ~I~~LkGVG~k~~~~L~klGI~Tv~DLL~ 238 (742)
.+..++|||||++++|-+.||.|++||..
T Consensus 122 ~l~~I~GvGpk~a~~ly~~Gi~tledL~~ 150 (381)
T 1jms_A 122 LFTSVFGVGLKTAEKWFRMGFRTLSKIQS 150 (381)
T ss_dssp HHHTSTTCCHHHHHHHHHTTCCSHHHHHH
T ss_pred HHHccCCCCHHHHHHHHHcCCCcHHHHHh
Confidence 45578999999999997779999999996
No 292
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=70.50 E-value=5.2 Score=37.52 Aligned_cols=36 Identities=17% Similarity=0.136 Sum_probs=24.9
Q ss_pred ceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcccH
Q 045263 534 NRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTE 570 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT~ 570 (742)
.++|.|+.|||||.++-......-..|..+.++ |+-
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~-~~~ 38 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKII-NYG 38 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEE-EHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEE-ECC
Confidence 578999999999988765554433345556665 543
No 293
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=70.31 E-value=3.5 Score=44.04 Aligned_cols=23 Identities=39% Similarity=0.439 Sum_probs=18.2
Q ss_pred CCceEEEccCCChHHHHHHHHHH
Q 045263 532 PMNRLLQGDVGCGKTVVAFLACM 554 (742)
Q Consensus 532 ~~~~LL~a~TGSGKT~val~ail 554 (742)
+.++++.||+|+|||.++-..+.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~ 94 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAK 94 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999987754443
No 294
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=70.12 E-value=2.8 Score=43.95 Aligned_cols=39 Identities=15% Similarity=-0.027 Sum_probs=24.7
Q ss_pred HHHHHHHHHHhc-CCCCCCceEEEccCCChHHHHHHHHHH
Q 045263 516 QLSAISEIIWDL-KQPVPMNRLLQGDVGCGKTVVAFLACM 554 (742)
Q Consensus 516 Q~~aI~~I~~~~-~~~~~~~~LL~a~TGSGKT~val~ail 554 (742)
|..++..+.... ..+...+.++.||+|+|||..+-..+-
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 19 NEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHH
T ss_pred CHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHH
Confidence 444555555544 333333489999999999987654433
No 295
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=70.04 E-value=5 Score=40.10 Aligned_cols=53 Identities=17% Similarity=0.296 Sum_probs=32.2
Q ss_pred CchHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHH
Q 045263 496 GWSSLTKKLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLA 552 (742)
Q Consensus 496 ~~~~l~~~~~~~lpf~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~a 552 (742)
.|..+ ..|++--++.+... ..++..+.++. +.....++.||+|+|||..+...
T Consensus 26 ~w~~I-~~~l~yq~~~~~~f-~~~l~~~~~~i--Pkkn~ili~GPPGtGKTt~a~al 78 (212)
T 1tue_A 26 DWRPI-VQFLRYQQIEFITF-LGALKSFLKGT--PKKNCLVFCGPANTGKSYFGMSF 78 (212)
T ss_dssp CSHHH-HHHHHHTTCCHHHH-HHHHHHHHHTC--TTCSEEEEESCGGGCHHHHHHHH
T ss_pred CHHHH-HHHHHHcCcCHHHH-HHHHHHHHhcC--CcccEEEEECCCCCCHHHHHHHH
Confidence 35544 34444445555445 55666666643 22235899999999999876443
No 296
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=69.96 E-value=3.1 Score=44.27 Aligned_cols=49 Identities=14% Similarity=0.220 Sum_probs=33.6
Q ss_pred HHHHHH-hcCCCCCCceEEEccCCChHHHHHHHHHHHHHh------cCCeEEEEcccH
Q 045263 520 ISEIIW-DLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIG------SGYQAAFMVPTE 570 (742)
Q Consensus 520 I~~I~~-~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~------~g~qvlilaPT~ 570 (742)
++.++. ++..+ ...+|.|++|+|||..++..+..+.. .+..++|+.-..
T Consensus 111 LD~~LgGGl~~G--~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 111 FDKLLGGGIESM--AITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp HHHHTTSSBCSS--EEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred HHHHhcCCCCCC--eEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 455553 33332 36799999999999998877776544 366788886544
No 297
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=69.86 E-value=4.3 Score=45.56 Aligned_cols=36 Identities=31% Similarity=0.333 Sum_probs=24.1
Q ss_pred CCCCCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEE
Q 045263 528 KQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFM 566 (742)
Q Consensus 528 ~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlil 566 (742)
....+..+||.||+|+|||.++-..... .+...+.+
T Consensus 234 g~~~~~~vLL~GppGtGKT~lAraia~~---~~~~fv~v 269 (489)
T 3hu3_A 234 GVKPPRGILLYGPPGTGKTLIARAVANE---TGAFFFLI 269 (489)
T ss_dssp TCCCCCEEEEECSTTSSHHHHHHHHHHH---CSSEEEEE
T ss_pred CCCCCCcEEEECcCCCCHHHHHHHHHHH---hCCCEEEE
Confidence 3445568999999999999977544332 25544444
No 298
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=69.72 E-value=4.5 Score=44.65 Aligned_cols=35 Identities=37% Similarity=0.414 Sum_probs=23.4
Q ss_pred CCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEc
Q 045263 532 PMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMV 567 (742)
Q Consensus 532 ~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlila 567 (742)
+.++|+.||+|+|||.++-..+.. +......+.+.
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~-l~~~~~~~~~~ 97 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQE-LGSKVPFCPMV 97 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH-HCTTSCEEEEE
T ss_pred CCeEEEECCCcCCHHHHHHHHHHH-hCCCceEEEEe
Confidence 357999999999999887655443 32224444444
No 299
>1wjj_A Hypothetical protein F20O9.120; DNA-binding protein-related, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: b.40.4.3
Probab=69.63 E-value=26 Score=32.84 Aligned_cols=23 Identities=13% Similarity=0.135 Sum_probs=18.5
Q ss_pred ccccCCCCCe-EEEEEEEEEeecc
Q 045263 250 AQIDLDDGQY-FIFIGEIISSRGM 272 (742)
Q Consensus 250 ~i~~l~~Ge~-vti~G~V~~~~~~ 272 (742)
.+.++++|.. +++.|+|++....
T Consensus 18 kI~dL~pg~~~v~l~~kVl~~~~v 41 (145)
T 1wjj_A 18 KVEQLKPGTTGHTLTVKVIEANIV 41 (145)
T ss_dssp CSTTCCTTCCCEEEEEEEEEEEEC
T ss_pred EHHHcCCCCCceEEEEEEEEcccc
Confidence 4788999876 7999999987533
No 300
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=69.55 E-value=5.3 Score=43.95 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhc-CCeEEEE
Q 045263 512 LTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGS-GYQAAFM 566 (742)
Q Consensus 512 Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~-g~qvlil 566 (742)
+.+.+..++..+.. .. ...++|.||||||||...- +++..+.. ...+++.
T Consensus 151 ~~~~~~~~L~~l~~--~~--ggii~I~GpnGSGKTTlL~-allg~l~~~~g~I~~~ 201 (418)
T 1p9r_A 151 MTAHNHDNFRRLIK--RP--HGIILVTGPTGSGKSTTLY-AGLQELNSSERNILTV 201 (418)
T ss_dssp CCHHHHHHHHHHHT--SS--SEEEEEECSTTSCHHHHHH-HHHHHHCCTTSCEEEE
T ss_pred CCHHHHHHHHHHHH--hc--CCeEEEECCCCCCHHHHHH-HHHhhcCCCCCEEEEe
Confidence 46677778887742 12 2368999999999997543 33444432 3445544
No 301
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=69.12 E-value=5 Score=43.14 Aligned_cols=34 Identities=29% Similarity=0.224 Sum_probs=23.3
Q ss_pred CCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcc
Q 045263 532 PMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVP 568 (742)
Q Consensus 532 ~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaP 568 (742)
+.++||.||+|+|||.++-..+.. .+..++.+-+
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~---~~~~~~~v~~ 181 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAE---SNATFFNISA 181 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHH---TTCEEEEECS
T ss_pred CceEEEECCCCCCHHHHHHHHHHh---hcCcEEEeeH
Confidence 458999999999999877554332 3555555443
No 302
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=69.11 E-value=3 Score=49.18 Aligned_cols=32 Identities=22% Similarity=0.255 Sum_probs=22.5
Q ss_pred ceEEEccCCChHHHHHHHHHHHHHhcCCeEEE
Q 045263 534 NRLLQGDVGCGKTVVAFLACMEVIGSGYQAAF 565 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val~ail~~l~~g~qvli 565 (742)
++++.||+|+|||.++-.........+...+.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~ 554 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIR 554 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEE
Confidence 58999999999999886655544444444433
No 303
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=68.86 E-value=6.7 Score=46.99 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHH
Q 045263 515 SQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVI 557 (742)
Q Consensus 515 ~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l 557 (742)
.|...+..+..-+.+..+.+++|.||+|+|||.++-..+....
T Consensus 174 Gr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~ 216 (854)
T 1qvr_A 174 GRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIV 216 (854)
T ss_dssp SCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHh
Confidence 4445555555544444456889999999999987765555443
No 304
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=68.71 E-value=10 Score=36.54 Aligned_cols=36 Identities=17% Similarity=0.104 Sum_probs=23.6
Q ss_pred CCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEE
Q 045263 531 VPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFM 566 (742)
Q Consensus 531 ~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlil 566 (742)
.+.-+.|.|+.|||||.++-...-..-..|..+.++
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 345678999999999987654443322345556554
No 305
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=68.60 E-value=4.6 Score=42.44 Aligned_cols=35 Identities=17% Similarity=0.172 Sum_probs=26.7
Q ss_pred CceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEc
Q 045263 533 MNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMV 567 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~ail~~l~~g~qvlila 567 (742)
.-+++.|++|+|||.++...+......|.+++++.
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 35689999999999887666655556677887765
No 306
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=68.33 E-value=4.4 Score=45.58 Aligned_cols=33 Identities=33% Similarity=0.387 Sum_probs=23.3
Q ss_pred CCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEc
Q 045263 532 PMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMV 567 (742)
Q Consensus 532 ~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlila 567 (742)
+..+||.||+|+|||.++-..+-.. |..++.+-
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l---~~~~i~in 109 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQN 109 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHT---TCEEEEEC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc---CCCEEEEe
Confidence 3578999999999998776554432 55555553
No 307
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=68.24 E-value=3.1 Score=43.52 Aligned_cols=62 Identities=15% Similarity=0.280 Sum_probs=37.8
Q ss_pred HHHHHHH-hcCCCCCCceEEEccCCChHHHHHHHHHHHHH------------hcC----CeEEEEcccHHH-HHHHHHHH
Q 045263 519 AISEIIW-DLKQPVPMNRLLQGDVGCGKTVVAFLACMEVI------------GSG----YQAAFMVPTELL-ATQHYEHL 580 (742)
Q Consensus 519 aI~~I~~-~~~~~~~~~~LL~a~TGSGKT~val~ail~~l------------~~g----~qvlilaPT~~L-a~Q~~~~l 580 (742)
.++.++. ++..+ ...+|.|++|+|||..++..+..+. ..| ..++|+.-...+ .+++.+.+
T Consensus 86 ~LD~~l~GGl~~g--~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~ 163 (322)
T 2i1q_A 86 ELDSVLGGGLESQ--SVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMA 163 (322)
T ss_dssp HHHHHTTSSEETT--EEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHH
T ss_pred hHHHhcCCCccCC--eEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHH
Confidence 3555553 33332 3679999999999999887776542 224 577777644332 44554444
Q ss_pred HH
Q 045263 581 LK 582 (742)
Q Consensus 581 ~~ 582 (742)
..
T Consensus 164 ~~ 165 (322)
T 2i1q_A 164 EH 165 (322)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 308
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=68.21 E-value=2 Score=48.55 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=16.6
Q ss_pred ceEEEccCCChHHHHHHHHH
Q 045263 534 NRLLQGDVGCGKTVVAFLAC 553 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val~ai 553 (742)
+++|.||+|+|||..+-...
T Consensus 43 ~VLL~GpPGtGKT~LAraLa 62 (500)
T 3nbx_X 43 SVFLLGPPGIAKSLIARRLK 62 (500)
T ss_dssp EEEEECCSSSSHHHHHHHGG
T ss_pred eeEeecCchHHHHHHHHHHH
Confidence 88999999999998764443
No 309
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=67.95 E-value=6.5 Score=40.03 Aligned_cols=46 Identities=17% Similarity=0.223 Sum_probs=30.0
Q ss_pred ceEEEccCCChHHHHHHHHHHHHHhcC-----------CeEEEEcccHHHHHHHHHHHH
Q 045263 534 NRLLQGDVGCGKTVVAFLACMEVIGSG-----------YQAAFMVPTELLATQHYEHLL 581 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val~ail~~l~~g-----------~qvlilaPT~~La~Q~~~~l~ 581 (742)
-.+|.|++|||||..+...+... ..| ..++++.-...+ .++..++.
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~~~-~~g~~~~g~~~~~~~~v~~~~~e~~~-~~~~~r~~ 88 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAAQI-AGGPDLLEVGELPTGPVIYLPAEDPP-TAIHHRLH 88 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH-HTCCCTTCCCCCCCCCEEEEESSSCH-HHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH-hcCCCcCCCccCCCccEEEEECCCCH-HHHHHHHH
Confidence 67999999999999877666543 343 567777644333 34433443
No 310
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=67.61 E-value=1.9 Score=45.11 Aligned_cols=21 Identities=29% Similarity=0.317 Sum_probs=17.0
Q ss_pred CceEEEccCCChHHHHHHHHH
Q 045263 533 MNRLLQGDVGCGKTVVAFLAC 553 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~ai 553 (742)
.++||.||+|+|||.++-...
T Consensus 46 ~~vLl~G~~GtGKT~la~~la 66 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALA 66 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHH
Confidence 469999999999998765443
No 311
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=67.34 E-value=4.4 Score=41.63 Aligned_cols=29 Identities=38% Similarity=0.528 Sum_probs=19.6
Q ss_pred HHhcCCCCCCceEEEccCCChHHHHHHHH
Q 045263 524 IWDLKQPVPMNRLLQGDVGCGKTVVAFLA 552 (742)
Q Consensus 524 ~~~~~~~~~~~~LL~a~TGSGKT~val~a 552 (742)
++++.-..+..++|.||+|||||..+-..
T Consensus 36 l~~~~l~~~~GvlL~Gp~GtGKTtLakal 64 (274)
T 2x8a_A 36 FKALGLVTPAGVLLAGPPGCGKTLLAKAV 64 (274)
T ss_dssp HHHTTCCCCSEEEEESSTTSCHHHHHHHH
T ss_pred HHHcCCCCCCeEEEECCCCCcHHHHHHHH
Confidence 33333333446899999999999876443
No 312
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=66.49 E-value=5.1 Score=40.56 Aligned_cols=35 Identities=17% Similarity=0.140 Sum_probs=25.1
Q ss_pred CCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEE
Q 045263 532 PMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFM 566 (742)
Q Consensus 532 ~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlil 566 (742)
++.+++.|++|||||.++-......-..|..++++
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~ 38 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVL 38 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEE
Confidence 35789999999999998766554433457666644
No 313
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=66.38 E-value=4.9 Score=40.16 Aligned_cols=22 Identities=41% Similarity=0.533 Sum_probs=17.0
Q ss_pred CCCceEEEccCCChHHHHHHHH
Q 045263 531 VPMNRLLQGDVGCGKTVVAFLA 552 (742)
Q Consensus 531 ~~~~~LL~a~TGSGKT~val~a 552 (742)
.+..++|.||+|+|||..+-..
T Consensus 48 ~~~g~ll~G~~G~GKTtl~~~i 69 (254)
T 1ixz_A 48 IPKGVLLVGPPGVGKTHLARAV 69 (254)
T ss_dssp CCSEEEEECCTTSSHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHH
Confidence 3446899999999999766443
No 314
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=66.23 E-value=3 Score=42.70 Aligned_cols=22 Identities=36% Similarity=0.394 Sum_probs=17.7
Q ss_pred CCceEEEccCCChHHHHHHHHH
Q 045263 532 PMNRLLQGDVGCGKTVVAFLAC 553 (742)
Q Consensus 532 ~~~~LL~a~TGSGKT~val~ai 553 (742)
+..++|.||+|+|||.++-..+
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la 75 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVA 75 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHH
Confidence 4578999999999998765443
No 315
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=66.00 E-value=3.5 Score=45.57 Aligned_cols=36 Identities=28% Similarity=0.261 Sum_probs=29.8
Q ss_pred CCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEc
Q 045263 532 PMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMV 567 (742)
Q Consensus 532 ~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlila 567 (742)
+..+++.|++|+|||.++...+......|++++++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 457899999999999988777776667788888875
No 316
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=65.98 E-value=4 Score=40.10 Aligned_cols=34 Identities=24% Similarity=0.114 Sum_probs=28.3
Q ss_pred CceEEEccCCChHHHHHHHHHHHHHhcCCeEEEE
Q 045263 533 MNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFM 566 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~ail~~l~~g~qvlil 566 (742)
|.+.+.+.-|+|||.+++..+......|++|+++
T Consensus 1 mkI~vs~kGGvGKTt~a~~LA~~la~~g~~Vlli 34 (254)
T 3kjh_A 1 MKLAVAGKGGVGKTTVAAGLIKIMASDYDKIYAV 34 (254)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHTTTCSCEEEE
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 3455688899999999988888777889999887
No 317
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=65.86 E-value=4.8 Score=51.79 Aligned_cols=49 Identities=16% Similarity=0.151 Sum_probs=37.8
Q ss_pred HHHHHHH--hcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEccc
Q 045263 519 AISEIIW--DLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPT 569 (742)
Q Consensus 519 aI~~I~~--~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT 569 (742)
.++.++. ++..+ ...+|.|++|||||..++..+...+..|.+++|+.-.
T Consensus 21 ~LD~lL~~GGi~~G--~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te 71 (1706)
T 3cmw_A 21 SLDIALGAGGLPMG--RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 71 (1706)
T ss_dssp HHHHHTSSSSEETT--SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred HHHHHhhcCCcCCC--eEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEec
Confidence 3444443 34333 4889999999999999999988888889999998644
No 318
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=65.82 E-value=3.3 Score=43.53 Aligned_cols=23 Identities=30% Similarity=0.245 Sum_probs=18.2
Q ss_pred CCceEEEccCCChHHHHHHHHHH
Q 045263 532 PMNRLLQGDVGCGKTVVAFLACM 554 (742)
Q Consensus 532 ~~~~LL~a~TGSGKT~val~ail 554 (742)
+..+||.||+|+|||..+-..+.
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CceEEEECCCCccHHHHHHHHHH
Confidence 35789999999999987754443
No 319
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=65.78 E-value=6.2 Score=37.11 Aligned_cols=34 Identities=26% Similarity=0.227 Sum_probs=23.5
Q ss_pred CceEEEccCCChHHHHHHHHHHHHHhcCCeEEEE
Q 045263 533 MNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFM 566 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~ail~~l~~g~qvlil 566 (742)
|.++|.|+.|||||.++-......-..|..++..
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~ 34 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLY 34 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4578999999999988765544433346665544
No 320
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=65.71 E-value=14 Score=37.85 Aligned_cols=36 Identities=17% Similarity=0.380 Sum_probs=26.8
Q ss_pred CCCceE-EEc-cCCChHHHHHHHHHHHHHhcCCeEEEE
Q 045263 531 VPMNRL-LQG-DVGCGKTVVAFLACMEVIGSGYQAAFM 566 (742)
Q Consensus 531 ~~~~~L-L~a-~TGSGKT~val~ail~~l~~g~qvlil 566 (742)
.+++++ +.+ ..|.|||.++...+......|++|+++
T Consensus 80 ~~~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLI 117 (271)
T 3bfv_A 80 SAVQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIV 117 (271)
T ss_dssp CCCCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 344544 443 468999999888877777889999887
No 321
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=65.54 E-value=6.9 Score=40.29 Aligned_cols=23 Identities=35% Similarity=0.377 Sum_probs=18.1
Q ss_pred CCceEEEccCCChHHHHHHHHHH
Q 045263 532 PMNRLLQGDVGCGKTVVAFLACM 554 (742)
Q Consensus 532 ~~~~LL~a~TGSGKT~val~ail 554 (742)
+.+++|.||+|+|||.++-....
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~ 60 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAH 60 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999987655433
No 322
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=65.31 E-value=5.9 Score=41.84 Aligned_cols=35 Identities=23% Similarity=0.152 Sum_probs=27.0
Q ss_pred CceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEc
Q 045263 533 MNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMV 567 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~ail~~l~~g~qvlila 567 (742)
..+.+.|+.|+|||.++...+......|++++++.
T Consensus 106 ~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 106 NIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 35788999999999887666655556688888874
No 323
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=64.81 E-value=5.9 Score=38.92 Aligned_cols=35 Identities=29% Similarity=0.302 Sum_probs=24.8
Q ss_pred ceEEEccCCChHHHHHHHHHHHHH-hcCCeEEEEcc
Q 045263 534 NRLLQGDVGCGKTVVAFLACMEVI-GSGYQAAFMVP 568 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val~ail~~l-~~g~qvlilaP 568 (742)
.+.|.||+|||||..+...+...+ ..+..++++.-
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 679999999999987765553333 55666666653
No 324
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=64.73 E-value=4.2 Score=38.33 Aligned_cols=22 Identities=36% Similarity=0.348 Sum_probs=18.0
Q ss_pred CceEEEccCCChHHHHHHHHHH
Q 045263 533 MNRLLQGDVGCGKTVVAFLACM 554 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~ail 554 (742)
.++++.|++|||||.++-..+.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999998765543
No 325
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=64.67 E-value=4.8 Score=49.92 Aligned_cols=48 Identities=25% Similarity=0.356 Sum_probs=36.3
Q ss_pred eEEEccCCChHHHHHHHHHHHHHhc---CCeEEEEcccHHHHHHHHHHHHHh
Q 045263 535 RLLQGDVGCGKTVVAFLACMEVIGS---GYQAAFMVPTELLATQHYEHLLKL 583 (742)
Q Consensus 535 ~LL~a~TGSGKT~val~ail~~l~~---g~qvlilaPT~~La~Q~~~~l~~~ 583 (742)
.+|.|..|||||.+.+.-+...+.. +.+++++||... .-++.+++...
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~-TFt~~~rl~~~ 54 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQM-TFLMEYELAKT 54 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGG-HHHHHHHHTCC
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcc-cHHHHHHHHHh
Confidence 5899999999999999888887766 468999999874 33344444443
No 326
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=64.62 E-value=2.9 Score=39.16 Aligned_cols=21 Identities=19% Similarity=0.172 Sum_probs=17.1
Q ss_pred CceEEEccCCChHHHHHHHHH
Q 045263 533 MNRLLQGDVGCGKTVVAFLAC 553 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~ai 553 (742)
+.++|.|+.|||||.++-...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La 24 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQ 24 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468999999999998875543
No 327
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=64.59 E-value=5.7 Score=51.89 Aligned_cols=44 Identities=18% Similarity=0.172 Sum_probs=36.6
Q ss_pred CceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHH
Q 045263 533 MNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHY 577 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT~~La~Q~~ 577 (742)
.++++.|++|||||..+...+.+.+..|..++|+.=. ++.++++
T Consensus 1082 ~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~e-e~~~~L~ 1125 (2050)
T 3cmu_A 1082 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE-HALDPIY 1125 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTT-SCCCHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEcc-ccHHHHH
Confidence 4899999999999999999999999999999998643 3444444
No 328
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=64.54 E-value=11 Score=40.06 Aligned_cols=37 Identities=22% Similarity=0.229 Sum_probs=29.1
Q ss_pred CCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEc
Q 045263 531 VPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMV 567 (742)
Q Consensus 531 ~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlila 567 (742)
....+.+.|.+|+|||..+...+......|.+++++.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 3457899999999999987766666666788887775
No 329
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=64.40 E-value=4 Score=39.58 Aligned_cols=22 Identities=36% Similarity=0.283 Sum_probs=17.8
Q ss_pred CceEEEccCCChHHHHHHHHHH
Q 045263 533 MNRLLQGDVGCGKTVVAFLACM 554 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~ail 554 (742)
|+++|.|+.|||||.++-..+.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999988765443
No 330
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=64.25 E-value=4.3 Score=38.62 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=18.4
Q ss_pred CCCceEEEccCCChHHHHHHHHH
Q 045263 531 VPMNRLLQGDVGCGKTVVAFLAC 553 (742)
Q Consensus 531 ~~~~~LL~a~TGSGKT~val~ai 553 (742)
.+++++|.|+.|||||.++-...
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La 31 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIA 31 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999998875443
No 331
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=64.21 E-value=6.9 Score=36.98 Aligned_cols=34 Identities=21% Similarity=0.174 Sum_probs=23.2
Q ss_pred CceEEEccCCChHHHHHHHHHHHHHhcCCeEEEE
Q 045263 533 MNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFM 566 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~ail~~l~~g~qvlil 566 (742)
|.+.+.|+.|||||.++-...-..-..|..++..
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 3578999999999998766554443447666543
No 332
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=63.38 E-value=4.6 Score=45.58 Aligned_cols=31 Identities=23% Similarity=0.314 Sum_probs=19.9
Q ss_pred CceEEEccCCChHHHHHHHHHHHHHhcCCeEE
Q 045263 533 MNRLLQGDVGCGKTVVAFLACMEVIGSGYQAA 564 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~ail~~l~~g~qvl 564 (742)
.+++|.||||||||... .+++..+....+.+
T Consensus 261 ~~i~I~GptGSGKTTlL-~aL~~~i~~~~gii 291 (511)
T 2oap_1 261 FSAIVVGETASGKTTTL-NAIMMFIPPDAKVV 291 (511)
T ss_dssp CCEEEEESTTSSHHHHH-HHHGGGSCTTCCEE
T ss_pred CEEEEECCCCCCHHHHH-HHHHhhCCCCCCEE
Confidence 37899999999999654 33444443333333
No 333
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=63.12 E-value=14 Score=38.28 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=25.1
Q ss_pred eEEEcc-CCChHHHHHHHHHHHHHhcCCeEEEE
Q 045263 535 RLLQGD-VGCGKTVVAFLACMEVIGSGYQAAFM 566 (742)
Q Consensus 535 ~LL~a~-TGSGKT~val~ail~~l~~g~qvlil 566 (742)
+++.+. .|.|||.++...+......|++|+++
T Consensus 107 I~vts~kgG~GKTtva~nLA~~lA~~G~rVLLI 139 (299)
T 3cio_A 107 LMITGATPDSGKTFVSSTLAAVIAQSDQKVLFI 139 (299)
T ss_dssp EEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEECCCCCCChHHHHHHHHHHHHhCCCcEEEE
Confidence 445544 68999999888777777789999988
No 334
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=62.67 E-value=3.8 Score=39.79 Aligned_cols=21 Identities=33% Similarity=0.309 Sum_probs=17.4
Q ss_pred CceEEEccCCChHHHHHHHHH
Q 045263 533 MNRLLQGDVGCGKTVVAFLAC 553 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~ai 553 (742)
|+++|.|+.|||||.++-..+
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 578999999999998875543
No 335
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=62.51 E-value=5.6 Score=38.15 Aligned_cols=25 Identities=32% Similarity=0.287 Sum_probs=19.9
Q ss_pred CCCCceEEEccCCChHHHHHHHHHH
Q 045263 530 PVPMNRLLQGDVGCGKTVVAFLACM 554 (742)
Q Consensus 530 ~~~~~~LL~a~TGSGKT~val~ail 554 (742)
..+|.++|.|+.|||||.++-...-
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4467899999999999998755543
No 336
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=62.07 E-value=8.3 Score=45.31 Aligned_cols=42 Identities=26% Similarity=0.263 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHH
Q 045263 515 SQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEV 556 (742)
Q Consensus 515 ~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~ 556 (742)
.|...+..+.+.+....+.+++|.|++|+|||.++-..+...
T Consensus 190 Gr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 190 GREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 344555555555555556689999999999998876554443
No 337
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=61.81 E-value=6.5 Score=39.98 Aligned_cols=21 Identities=43% Similarity=0.509 Sum_probs=16.6
Q ss_pred CCceEEEccCCChHHHHHHHH
Q 045263 532 PMNRLLQGDVGCGKTVVAFLA 552 (742)
Q Consensus 532 ~~~~LL~a~TGSGKT~val~a 552 (742)
+..++|.||+|+|||..+-..
T Consensus 73 ~~gvll~Gp~GtGKTtl~~~i 93 (278)
T 1iy2_A 73 PKGVLLVGPPGVGKTHLARAV 93 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHH
T ss_pred CCeEEEECCCcChHHHHHHHH
Confidence 445899999999999876443
No 338
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=61.76 E-value=12 Score=43.69 Aligned_cols=67 Identities=12% Similarity=0.014 Sum_probs=52.0
Q ss_pred cCCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEechHHHhhccccCC
Q 045263 559 SGYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGTHSLIAEKVEFSA 638 (742)
Q Consensus 559 ~g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT~~~l~~~v~~~~ 638 (742)
.+.+++|.++|+.-++++++.+.+. + +.+..+||+++..++ .++..+|+|+|.. +...+.+.
T Consensus 395 ~~~~vLVFv~Tr~~ae~la~~L~~~----g-----~~v~~lHG~l~q~er-------~~~~~~VLVATdV-aerGIDId- 456 (666)
T 3o8b_A 395 RGGRHLIFCHSKKKCDELAAKLSGL----G-----INAVAYYRGLDVSVI-------PTIGDVVVVATDA-LMTGYTGD- 456 (666)
T ss_dssp SSSEEEEECSCHHHHHHHHHHHHTT----T-----CCEEEECTTSCGGGS-------CSSSCEEEEECTT-HHHHCCCC-
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHhC----C-----CcEEEecCCCCHHHH-------HhCCCcEEEECCh-HHccCCCC-
Confidence 5789999999999999988887753 3 689999999987653 2455699999964 44466665
Q ss_pred ccEEE
Q 045263 639 LRLAI 643 (742)
Q Consensus 639 l~LVI 643 (742)
+++||
T Consensus 457 V~~VI 461 (666)
T 3o8b_A 457 FDSVI 461 (666)
T ss_dssp BSEEE
T ss_pred CcEEE
Confidence 88877
No 339
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=61.65 E-value=8.4 Score=36.96 Aligned_cols=34 Identities=15% Similarity=0.117 Sum_probs=24.0
Q ss_pred ceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEc
Q 045263 534 NRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMV 567 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val~ail~~l~~g~qvlila 567 (742)
-+.+.|+.|||||......+-..-..|.++.++.
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 4678999999999876555444445577766665
No 340
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=61.65 E-value=4 Score=37.95 Aligned_cols=21 Identities=29% Similarity=0.069 Sum_probs=16.7
Q ss_pred CceEEEccCCChHHHHHHHHH
Q 045263 533 MNRLLQGDVGCGKTVVAFLAC 553 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~ai 553 (742)
+.+++.|++|||||.++-...
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~ 23 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFI 23 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHH
Confidence 457899999999998775443
No 341
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=61.64 E-value=1.7 Score=45.87 Aligned_cols=35 Identities=29% Similarity=0.527 Sum_probs=0.0
Q ss_pred ccCCcCCCCCHHHHHHHHhCCCCCHhHHhhcCCCc
Q 045263 209 KCISCVPGLSKRLYHQLENCGFYTLRKLLHHFPRT 243 (742)
Q Consensus 209 ~~I~~LkGVG~k~~~~L~klGI~Tv~DLL~~fPrr 243 (742)
.+|+.|+||++...++|++.||+|++|++..=|..
T Consensus 12 ~~~~~l~g~~~~~~~~l~~~g~~t~~~~~~~~~~~ 46 (324)
T 2z43_A 12 KTINDLPGISQTVINKLIEAGYSSLETLAVASPQD 46 (324)
T ss_dssp -----------------------------------
T ss_pred ccHHHcCCCCHHHHHHHHHcCCCcHHHHHcCCHHH
Confidence 38999999999999999999999999999766554
No 342
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=61.44 E-value=9.2 Score=36.63 Aligned_cols=36 Identities=17% Similarity=0.149 Sum_probs=25.4
Q ss_pred CCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEE
Q 045263 531 VPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFM 566 (742)
Q Consensus 531 ~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlil 566 (742)
.++.++|.|+.|||||.++-......-..+..+..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~ 43 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL 43 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEe
Confidence 356789999999999998766554433446666444
No 343
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=61.39 E-value=13 Score=46.30 Aligned_cols=53 Identities=17% Similarity=0.235 Sum_probs=45.2
Q ss_pred ceEEEccCCChHHHHHHHHHHHHHhc-C-----------CeEEEEcccHHHHHHHHHHHHHhhhh
Q 045263 534 NRLLQGDVGCGKTVVAFLACMEVIGS-G-----------YQAAFMVPTELLATQHYEHLLKLLDN 586 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val~ail~~l~~-g-----------~qvlilaPT~~La~Q~~~~l~~~l~~ 586 (742)
..+|.|.-|||||.+...-++..+.. | .++|+|+=|+.=|..+.+++.+.+..
T Consensus 18 ~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L~~ 82 (1180)
T 1w36_B 18 ERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIHE 82 (1180)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHHHH
Confidence 56999999999999998888888853 2 38999999999999999998887653
No 344
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=60.98 E-value=7.6 Score=41.28 Aligned_cols=43 Identities=26% Similarity=0.298 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHH-HhcC-C--CCCCceEE--EccCCChHHHHHHHHHHH
Q 045263 513 TSSQLSAISEII-WDLK-Q--PVPMNRLL--QGDVGCGKTVVAFLACME 555 (742)
Q Consensus 513 t~~Q~~aI~~I~-~~~~-~--~~~~~~LL--~a~TGSGKT~val~ail~ 555 (742)
+..+.+.+...+ .... . ..+..++| .|+.|+|||..+-..+-.
T Consensus 27 R~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~ 75 (412)
T 1w5s_A 27 RRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKR 75 (412)
T ss_dssp SCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHH
Confidence 445555565555 4321 1 23457888 999999999887655443
No 345
>3koj_A Uncharacterized protein YCF41; single-strand binding protein family, PF00436, SNR59A, NESG, structural genomics, PSI-2; 1.90A {Synechococcus elongatus pcc 6301}
Probab=60.77 E-value=40 Score=29.87 Aligned_cols=73 Identities=10% Similarity=0.219 Sum_probs=43.4
Q ss_pred CeEEEEEEEEEeeccc-cCCC-ceEEEEEEeeeeccCCCCCCcceeeecCCCceeEEEEEeeeeecccccccchhHhhhc
Q 045263 258 QYFIFIGEIISSRGMK-AGCS-FSFLEVIVGCEIADTETTSGDEVVNIDSGQKKKIYLHLKKFFRGTRFTSIPFLKSIEG 335 (742)
Q Consensus 258 e~vti~G~V~~~~~~~-~~~~-~~~l~v~v~~~~~~~~~~~~~~~~~~~~g~~~~i~l~~~~ff~~~~Ffn~pfl~~~~~ 335 (742)
..|++.|++.+-...+ ...+ ..+.++.|... ... +++ . + .|++.+.|-+. -..+.+
T Consensus 12 ~~v~LiGrL~~DPelR~t~~g~~~va~f~lAv~-~~~----------~~~-~--t------~fi~vv~wgk~--AE~~~~ 69 (108)
T 3koj_A 12 NSCILQATVVEAPQLRYAQDNQTPVAEMVVQFP-GLS----------SKD-A--P------ARLKVVGWGAV--AQELQD 69 (108)
T ss_dssp EEEEEEEEEEEEEEEEECTTSSSEEEEEEEEEC-C----------------C--C------EEEEEEEETHH--HHHHHH
T ss_pred ceEEEEEEECCCCEEEEeCCCCEEEEEEEEEEC-Ccc----------cCC-C--c------EEEEEEEEhHH--HHHHHH
Confidence 4589999998765544 3334 67777777642 110 111 1 1 34444445322 122356
Q ss_pred cccCCcEEEEEEEEeec
Q 045263 336 KHKVGEFVCVSGKVRAM 352 (742)
Q Consensus 336 ~l~~G~~v~v~GKv~~~ 352 (742)
.+++|+.|+|.|++...
T Consensus 70 yl~KG~~V~VeGrL~~r 86 (108)
T 3koj_A 70 RCRLNDEVVLEGRLRIN 86 (108)
T ss_dssp HCCTTCEEEEEEEEEEE
T ss_pred hCCCCCEEEEEEEEEee
Confidence 79999999999999764
No 346
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=60.36 E-value=5.7 Score=38.78 Aligned_cols=24 Identities=25% Similarity=0.167 Sum_probs=19.0
Q ss_pred CCCceEEEccCCChHHHHHHHHHH
Q 045263 531 VPMNRLLQGDVGCGKTVVAFLACM 554 (742)
Q Consensus 531 ~~~~~LL~a~TGSGKT~val~ail 554 (742)
.+|.++|.|+.|||||.++-..+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 357889999999999988755443
No 347
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=60.35 E-value=5.2 Score=39.44 Aligned_cols=22 Identities=27% Similarity=0.224 Sum_probs=17.8
Q ss_pred CceEEEccCCChHHHHHHHHHH
Q 045263 533 MNRLLQGDVGCGKTVVAFLACM 554 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~ail 554 (742)
|..++.||+||||+..+-..+-
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~ 22 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAK 22 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 6789999999999987755543
No 348
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=60.29 E-value=6.8 Score=48.17 Aligned_cols=74 Identities=20% Similarity=0.246 Sum_probs=55.2
Q ss_pred CCeEEEEcccHHHHHHHHHHHHHhhhhccCCCCCcEEEEEeCCCChHHHHHHHHHhhcCCccEEEec---hHHHhhcccc
Q 045263 560 GYQAAFMVPTELLATQHYEHLLKLLDNMEEDKHKPKIALLTGSTPVKQSRMIRKDLQTGDITLVIGT---HSLIAEKVEF 636 (742)
Q Consensus 560 g~qvlilaPT~~La~Q~~~~l~~~l~~~~~~~~~i~V~ll~G~~~~~er~~i~~~l~~G~~~IVVgT---~~~l~~~v~~ 636 (742)
+.+++|.++|+.-++.+++.|.+. +++..+||+.. .+++.+++|+.+|+|+| ...+...+.+
T Consensus 275 ~~~~LVF~~t~~~a~~l~~~L~~~----------~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGIDi 339 (1054)
T 1gku_B 275 GTGGIIYARTGEEAEEIYESLKNK----------FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLDL 339 (1054)
T ss_dssp CSCEEEEESSHHHHHHHHHTTTTS----------SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSCC
T ss_pred CCCEEEEEcCHHHHHHHHHHHhhc----------cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEecccc
Confidence 688999999998888777765543 36888999874 45567889999999996 5667678899
Q ss_pred CCc-cEEEEeCCc
Q 045263 637 SAL-RLAIVDEQQ 648 (742)
Q Consensus 637 ~~l-~LVIIDEaH 648 (742)
.++ ++||.-..-
T Consensus 340 p~VI~~VI~~~~P 352 (1054)
T 1gku_B 340 PERIRFAVFVGCP 352 (1054)
T ss_dssp TTTCCEEEEESCC
T ss_pred CCcccEEEEeCCC
Confidence 994 999976555
No 349
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=60.22 E-value=5.7 Score=41.69 Aligned_cols=20 Identities=40% Similarity=0.537 Sum_probs=16.4
Q ss_pred ceEEEccCCChHHHHHHHHH
Q 045263 534 NRLLQGDVGCGKTVVAFLAC 553 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val~ai 553 (742)
..++.||.|+|||.++-..+
T Consensus 40 ~~ll~G~~G~GKT~la~~la 59 (373)
T 1jr3_A 40 AYLFSGTRGVGKTSIARLLA 59 (373)
T ss_dssp EEEEESCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57999999999998775443
No 350
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=59.99 E-value=6.5 Score=38.38 Aligned_cols=24 Identities=21% Similarity=0.290 Sum_probs=19.3
Q ss_pred CCCceEEEccCCChHHHHHHHHHH
Q 045263 531 VPMNRLLQGDVGCGKTVVAFLACM 554 (742)
Q Consensus 531 ~~~~~LL~a~TGSGKT~val~ail 554 (742)
.++.++|.|+.|||||.++-..+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999988765543
No 351
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7
Probab=59.86 E-value=5.6 Score=32.57 Aligned_cols=29 Identities=17% Similarity=0.362 Sum_probs=22.4
Q ss_pred cCCcCCCCCHHHHHHHHh-CCCCCHhHHhh
Q 045263 210 CISCVPGLSKRLYHQLEN-CGFYTLRKLLH 238 (742)
Q Consensus 210 ~I~~LkGVG~k~~~~L~k-lGI~Tv~DLL~ 238 (742)
.+..+||||+++++.+-+ .++.+++||..
T Consensus 28 ~L~~ipGIG~~~A~~Il~~r~~~s~~eL~~ 57 (75)
T 2duy_A 28 ELMALPGIGPVLARRIVEGRPYARVEDLLK 57 (75)
T ss_dssp HHTTSTTCCHHHHHHHHHTCCCSSGGGGGG
T ss_pred HHHhCCCCCHHHHHHHHHHcccCCHHHHHh
Confidence 356789999999998844 57777777764
No 352
>3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis}
Probab=59.82 E-value=29 Score=30.75 Aligned_cols=76 Identities=13% Similarity=0.243 Sum_probs=43.9
Q ss_pred eEEEEEEEEEeeccc-cCCCceEEEEEEeeeeccCCCCCCcceeeecCCCceeEEEEEeeeeecccccccchhHhhhccc
Q 045263 259 YFIFIGEIISSRGMK-AGCSFSFLEVIVGCEIADTETTSGDEVVNIDSGQKKKIYLHLKKFFRGTRFTSIPFLKSIEGKH 337 (742)
Q Consensus 259 ~vti~G~V~~~~~~~-~~~~~~~l~v~v~~~~~~~~~~~~~~~~~~~~g~~~~i~l~~~~ff~~~~Ffn~pfl~~~~~~l 337 (742)
.|++.|+|..-...+ ...+..+.++.|.+..... +.+|...+ .|++.+.|... ...+.+.+
T Consensus 7 ~v~l~G~l~~dpe~r~t~~G~~v~~f~la~~~~~~----------~~~g~~~t------~~~~v~~wg~~--Ae~~~~~l 68 (116)
T 3vdy_A 7 QVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFK----------NASGEIEA------DYVNCTLWRKT--AENTALYC 68 (116)
T ss_dssp CEEEEEEESSCCEEEECTTSCEEEEEEEEEECSSC----------CSSSCCCE------EEEEEEEEHHH--HHHHHHHC
T ss_pred EEEEEEEEccCcEEEECCCCCEEEEEEEEEecccc----------CCCCcccc------EEEEEEEECHH--HHHHHHhC
Confidence 588999998654333 3446677777776422111 12232223 34444444321 12234668
Q ss_pred cCCcEEEEEEEEeec
Q 045263 338 KVGEFVCVSGKVRAM 352 (742)
Q Consensus 338 ~~G~~v~v~GKv~~~ 352 (742)
++|+.|.|.|++...
T Consensus 69 ~KG~~V~V~G~l~~~ 83 (116)
T 3vdy_A 69 QKGSLVGVSGRIQTR 83 (116)
T ss_dssp CTTCEEEEEEEEEEE
T ss_pred CCCCEEEEEEEEEee
Confidence 999999999999753
No 353
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=59.79 E-value=3.7 Score=49.22 Aligned_cols=33 Identities=21% Similarity=0.220 Sum_probs=22.3
Q ss_pred ceEEEccCCChHHHHHHHHHHHHHhcCCeEEEE
Q 045263 534 NRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFM 566 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val~ail~~l~~g~qvlil 566 (742)
.+++.||+|+|||.++-.........+...+.+
T Consensus 590 ~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i 622 (854)
T 1qvr_A 590 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRI 622 (854)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEE
Confidence 689999999999988765544433334444433
No 354
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=59.73 E-value=9.7 Score=38.85 Aligned_cols=18 Identities=28% Similarity=0.329 Sum_probs=15.0
Q ss_pred CceEEEccCCChHHHHHH
Q 045263 533 MNRLLQGDVGCGKTVVAF 550 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val 550 (742)
..++|.||+|||||...-
T Consensus 26 ~~v~i~Gp~GsGKSTll~ 43 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIA 43 (261)
T ss_dssp EEEEEECSTTCSHHHHHH
T ss_pred CEEEEECCCCccHHHHHH
Confidence 368999999999997643
No 355
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=59.63 E-value=9.4 Score=35.79 Aligned_cols=35 Identities=23% Similarity=0.227 Sum_probs=23.1
Q ss_pred CCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEE
Q 045263 532 PMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFM 566 (742)
Q Consensus 532 ~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlil 566 (742)
++.+.|.|+.|||||.++-...-..-..|..++.+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~ 39 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL 39 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEE
Confidence 35788999999999987654443322246555544
No 356
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=59.58 E-value=5.7 Score=36.64 Aligned_cols=22 Identities=32% Similarity=0.300 Sum_probs=17.7
Q ss_pred CceEEEccCCChHHHHHHHHHH
Q 045263 533 MNRLLQGDVGCGKTVVAFLACM 554 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~ail 554 (742)
|.++|.|+.|||||.++-....
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999988755443
No 357
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=59.37 E-value=4.1 Score=45.22 Aligned_cols=22 Identities=41% Similarity=0.528 Sum_probs=18.0
Q ss_pred CCceEEEccCCChHHHHHHHHH
Q 045263 532 PMNRLLQGDVGCGKTVVAFLAC 553 (742)
Q Consensus 532 ~~~~LL~a~TGSGKT~val~ai 553 (742)
+.++|+.||+|+|||.++-..+
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA 71 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLA 71 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHH
Confidence 4689999999999998765443
No 358
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=59.00 E-value=4.4 Score=43.40 Aligned_cols=21 Identities=24% Similarity=0.316 Sum_probs=17.6
Q ss_pred ceEEEccCCChHHHHHHHHHH
Q 045263 534 NRLLQGDVGCGKTVVAFLACM 554 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val~ail 554 (742)
.++|.||||||||.++...+.
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~ 62 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAA 62 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 679999999999998766554
No 359
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=58.92 E-value=6.8 Score=36.72 Aligned_cols=22 Identities=18% Similarity=0.113 Sum_probs=17.5
Q ss_pred CceEEEccCCChHHHHHHHHHH
Q 045263 533 MNRLLQGDVGCGKTVVAFLACM 554 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~ail 554 (742)
+.++|.|+.|||||.++-....
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999998755443
No 360
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=58.82 E-value=10 Score=39.69 Aligned_cols=36 Identities=22% Similarity=0.107 Sum_probs=24.8
Q ss_pred CCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEc
Q 045263 532 PMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMV 567 (742)
Q Consensus 532 ~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlila 567 (742)
+..+.+.||+|||||...-..+...-..++++++..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g 137 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCA 137 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 446789999999999876554443334466676664
No 361
>1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=58.80 E-value=26 Score=31.05 Aligned_cols=73 Identities=18% Similarity=0.141 Sum_probs=42.9
Q ss_pred ccccCCCCCe-EEEEEEEEEeecc---cc-CCCceEEEEEEeeeeccCCCCCCcceeeecCCCceeEEEEEeeeeecccc
Q 045263 250 AQIDLDDGQY-FIFIGEIISSRGM---KA-GCSFSFLEVIVGCEIADTETTSGDEVVNIDSGQKKKIYLHLKKFFRGTRF 324 (742)
Q Consensus 250 ~i~~l~~Ge~-vti~G~V~~~~~~---~~-~~~~~~l~v~v~~~~~~~~~~~~~~~~~~~~g~~~~i~l~~~~ff~~~~F 324 (742)
+|++|.++.. ++|.|+|++.... .. ++...++.+.+. |++| .|... .|
T Consensus 6 ~Is~L~p~~~~w~I~~rV~~k~~~r~~~~~~~~g~~~~~~L~----------------De~G---~I~at--------~~ 58 (114)
T 1ynx_A 6 AIEQLSPYQNVWTIKARVSYKGEIKTWHNQRGDGKLFNVNFL----------------DTSG---EIRAT--------AF 58 (114)
T ss_dssp CGGGCCTTTCCCEEEEEEEEEEEEEEEECSSCEEEEEEEEEE----------------ETTE---EEEEE--------EC
T ss_pred EHHHCCCCCCceEEEEEEEEeccceEEecCCCCceEEEEEEE----------------CCCC---eEEEE--------EC
Confidence 6889999885 8999999976332 11 122345555554 3344 24321 12
Q ss_pred cccchhHhhhccccCCcEEEEEE-EEee
Q 045263 325 TSIPFLKSIEGKHKVGEFVCVSG-KVRA 351 (742)
Q Consensus 325 fn~pfl~~~~~~l~~G~~v~v~G-Kv~~ 351 (742)
+ .....+...|++|+.|.|+| +|+.
T Consensus 59 -~-~~~~~f~~~l~eG~vy~Is~~~V~~ 84 (114)
T 1ynx_A 59 -N-DFATKFNEILQEGKVYYVSKAKLQP 84 (114)
T ss_dssp -H-HHHHHHHHHSCSSSEEEEESCEEEE
T ss_pred -H-HHHHHHHhhcccCcEEEECCcEEEE
Confidence 2 12222346799999999986 4544
No 362
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=58.53 E-value=2 Score=45.70 Aligned_cols=44 Identities=18% Similarity=0.216 Sum_probs=0.0
Q ss_pred cccchhhhccCCcCC--CCCHHHHHHHHhCCCCCHhHHhhcCCCcc
Q 045263 201 ASIEPLLDKCISCVP--GLSKRLYHQLENCGFYTLRKLLHHFPRTY 244 (742)
Q Consensus 201 ~~~~~~L~~~I~~Lk--GVG~k~~~~L~klGI~Tv~DLL~~fPrrY 244 (742)
.+++.....+|+.|+ ||++...++|++.||+|++|++..=|..-
T Consensus 17 ~~~~~~~~~~~~~l~~~g~~~~~~~~l~~~g~~t~~~~~~~~~~~l 62 (343)
T 1v5w_A 17 QDEEESLFQDIDLLQKHGINVADIKKLKSVGICTIKGIQMTTRRAL 62 (343)
T ss_dssp ----------------------------------------------
T ss_pred hcccccccCcHHHHhhCCCCHHHHHHHHHcCCCcHHHHHhCCHHHH
Confidence 344433445899999 99999999999999999999996655443
No 363
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=58.52 E-value=6.2 Score=36.33 Aligned_cols=20 Identities=30% Similarity=0.258 Sum_probs=16.5
Q ss_pred ceEEEccCCChHHHHHHHHH
Q 045263 534 NRLLQGDVGCGKTVVAFLAC 553 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val~ai 553 (742)
.++|.|+.|||||.++-...
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~ 22 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLS 22 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 57899999999998875544
No 364
>3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe}
Probab=58.26 E-value=52 Score=31.17 Aligned_cols=33 Identities=30% Similarity=0.506 Sum_probs=22.9
Q ss_pred ccccCCcEEEEEEEEeecCCCceeEEeeceeeecC
Q 045263 335 GKHKVGEFVCVSGKVRAMRSNNHYEMREYNIDVLK 369 (742)
Q Consensus 335 ~~l~~G~~v~v~GKv~~~~~~~~~~m~~~~~e~l~ 369 (742)
..+.+|+.+.|.|.++.+++. .|+.-..+..++
T Consensus 95 ~~l~~G~~VrV~G~v~~fr~~--rqI~~~~i~~v~ 127 (159)
T 3kf6_A 95 ISMSPGNVVCVFGKINSFRSE--VELIAQSFEELR 127 (159)
T ss_dssp TTCCTTCEEEEEEEEECSSSS--CEEEEEEEEEEC
T ss_pred ccCCCCCEEEEEEEEEeeCCE--EEEEEEEEEECC
Confidence 458999999999999998754 444333343443
No 365
>3k7u_C MP18 RNA editing complex protein; OB-fold, RNA-editing proteins, kinetoplastids, system, RNA binding protein; 2.10A {Trypanosoma brucei} PDB: 3k80_D 3stb_D
Probab=57.80 E-value=58 Score=30.48 Aligned_cols=77 Identities=19% Similarity=0.244 Sum_probs=45.3
Q ss_pred CeEEEEEEEEEeeccccCCCceEEEEEEeeeeccCCCCCCcceeeecCCC---ceeEEEEEeeeeecccccccchhHhhh
Q 045263 258 QYFIFIGEIISSRGMKAGCSFSFLEVIVGCEIADTETTSGDEVVNIDSGQ---KKKIYLHLKKFFRGTRFTSIPFLKSIE 334 (742)
Q Consensus 258 e~vti~G~V~~~~~~~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~~~~g~---~~~i~l~~~~ff~~~~Ffn~pfl~~~~ 334 (742)
..|++.|++..-..... .+..+.++.|.+...+. +.+|. ..+ .||+.+.|-. .+-..+.
T Consensus 7 NkV~LiGrLg~DPer~t-~G~~va~FslAv~~~~~----------~~~Ge~~~~~t------~w~~vv~wgk-~lAe~~~ 68 (148)
T 3k7u_C 7 NSVTLVGVVHDIQSGFV-YEDAVTQFTLTTTSIDT----------THPTQEVVVEK------DHHTIRCFGE-LFSAEVK 68 (148)
T ss_dssp CCEEEEEEEEEEEEEES-SSSEEEEEEEEEECC---------------------CE------EEEEEEEESH-HHHHHHH
T ss_pred cEEEEEEEeccCCEeee-CCcEEEEEEEEECCcee----------cCCCCEEcccc------EEEEEEEECc-HHHHHHH
Confidence 35899999987654334 66777777776432111 11121 112 4555555532 2223345
Q ss_pred ccccCCcEEEEEEEEeec
Q 045263 335 GKHKVGEFVCVSGKVRAM 352 (742)
Q Consensus 335 ~~l~~G~~v~v~GKv~~~ 352 (742)
+.+++|+.|+|.|++...
T Consensus 69 ~yl~KG~~V~VeGrL~~r 86 (148)
T 3k7u_C 69 QKVKEGNVVCVNGRLRLS 86 (148)
T ss_dssp HHCCTTCEEEEEEEEEEC
T ss_pred hhCCCCCEEEEEEEEEee
Confidence 779999999999999864
No 366
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=57.63 E-value=6.2 Score=38.38 Aligned_cols=22 Identities=27% Similarity=0.220 Sum_probs=17.8
Q ss_pred CceEEEccCCChHHHHHHHHHH
Q 045263 533 MNRLLQGDVGCGKTVVAFLACM 554 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~ail 554 (742)
|+++|.|+.|||||.++-..+.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999988755543
No 367
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=57.62 E-value=6.6 Score=36.80 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=18.4
Q ss_pred CceEEEccCCChHHHHHHHHHHH
Q 045263 533 MNRLLQGDVGCGKTVVAFLACME 555 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~ail~ 555 (742)
+.++|.|+.|||||.++-.....
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999887655443
No 368
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=57.26 E-value=7.3 Score=36.61 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=17.7
Q ss_pred CceEEEccCCChHHHHHHHHHH
Q 045263 533 MNRLLQGDVGCGKTVVAFLACM 554 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~ail 554 (742)
+.++|.|+.|||||.++-....
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999998755443
No 369
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=57.23 E-value=5.6 Score=41.88 Aligned_cols=21 Identities=38% Similarity=0.510 Sum_probs=17.0
Q ss_pred CceEEEccCCChHHHHHHHHH
Q 045263 533 MNRLLQGDVGCGKTVVAFLAC 553 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~ai 553 (742)
..+++.||+|+|||..+-..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia 72 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIA 72 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHH
Confidence 478999999999998765443
No 370
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=57.13 E-value=6.2 Score=37.04 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=17.6
Q ss_pred CCceEEEccCCChHHHHHHHHH
Q 045263 532 PMNRLLQGDVGCGKTVVAFLAC 553 (742)
Q Consensus 532 ~~~~LL~a~TGSGKT~val~ai 553 (742)
++.++|.|++|||||.++-...
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999998875443
No 371
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=57.07 E-value=6.3 Score=36.54 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=16.4
Q ss_pred CceEEEccCCChHHHHHHHH
Q 045263 533 MNRLLQGDVGCGKTVVAFLA 552 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~a 552 (742)
+.+.|.|+.|||||.++-..
T Consensus 5 ~~i~l~G~~GsGKSTl~~~L 24 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQL 24 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHH
Confidence 47899999999999876443
No 372
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=57.00 E-value=4.9 Score=39.11 Aligned_cols=44 Identities=16% Similarity=0.213 Sum_probs=27.6
Q ss_pred eEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHH
Q 045263 535 RLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLK 582 (742)
Q Consensus 535 ~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT~~La~Q~~~~l~~ 582 (742)
.+|.|++|||||..+...+.. |.++++++.....-..+.+++..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~----~~~~~yiaT~~~~d~e~~~rI~~ 45 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD----APQVLYIATSQILDDEMAARIQH 45 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS----CSSEEEEECCCC------CHHHH
T ss_pred EEEECCCCCcHHHHHHHHHhc----CCCeEEEecCCCCCHHHHHHHHH
Confidence 589999999999877654432 67889998765543444444443
No 373
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=56.78 E-value=7.2 Score=37.50 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=17.9
Q ss_pred CceEEEccCCChHHHHHHHHHH
Q 045263 533 MNRLLQGDVGCGKTVVAFLACM 554 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~ail 554 (742)
+.++|.|++|||||.++-..+-
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3789999999999998765543
No 374
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=56.76 E-value=3.5 Score=43.98 Aligned_cols=32 Identities=16% Similarity=0.153 Sum_probs=23.5
Q ss_pred ceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcc
Q 045263 534 NRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVP 568 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaP 568 (742)
..+|.||+|+|||..+...+.. .|.+++|+.-
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~---~G~~VlyIs~ 156 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEA---LGGKDKYATV 156 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHH---HHTTSCCEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHh---CCCCEEEEEe
Confidence 4599999999999988776654 4555555543
No 375
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=56.56 E-value=11 Score=36.44 Aligned_cols=33 Identities=27% Similarity=0.330 Sum_probs=26.7
Q ss_pred EEEccCCChHHHHHHHHHHHHHhcCCeEEEEcc
Q 045263 536 LLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVP 568 (742)
Q Consensus 536 LL~a~TGSGKT~val~ail~~l~~g~qvlilaP 568 (742)
+.....|+|||.+++..+......|++++++=|
T Consensus 6 v~s~kgGvGKTt~a~nLa~~la~~G~rVll~dp 38 (224)
T 1byi_A 6 VTGTDTEVGKTVASCALLQAAKAAGYRTAGYKP 38 (224)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcc
Confidence 444568999999998888877788999999755
No 376
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=56.47 E-value=9.7 Score=40.99 Aligned_cols=20 Identities=25% Similarity=0.250 Sum_probs=15.9
Q ss_pred CceEEEccCCChHHHHHHHH
Q 045263 533 MNRLLQGDVGCGKTVVAFLA 552 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~a 552 (742)
..++|.||||||||...-..
T Consensus 137 ~~i~ivG~~GsGKTTll~~l 156 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASM 156 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 46899999999999765433
No 377
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus}
Probab=56.18 E-value=7 Score=36.19 Aligned_cols=29 Identities=14% Similarity=0.211 Sum_probs=23.7
Q ss_pred cCCcCCCCCHHHHHHHHh-CCCCCHhHHhh
Q 045263 210 CISCVPGLSKRLYHQLEN-CGFYTLRKLLH 238 (742)
Q Consensus 210 ~I~~LkGVG~k~~~~L~k-lGI~Tv~DLL~ 238 (742)
.+..||||||+++++.-+ -.+.+++||+.
T Consensus 64 eL~~LpGiGp~~A~~II~~GpF~svedL~~ 93 (134)
T 1s5l_U 64 AFIQYRGLYPTLAKLIVKNAPYESVEDVLN 93 (134)
T ss_dssp GGGGSTTCTHHHHHHHHHTCCCSSGGGGGG
T ss_pred HHHHCCCCCHHHHHHHHHcCCCCCHHHHHh
Confidence 455699999999999865 46899999985
No 378
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=56.17 E-value=52 Score=32.75 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=18.2
Q ss_pred CCCceEEEccCCChHHHHHHHHH
Q 045263 531 VPMNRLLQGDVGCGKTVVAFLAC 553 (742)
Q Consensus 531 ~~~~~LL~a~TGSGKT~val~ai 553 (742)
.++.+++.|++|||||.++-...
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~ 53 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQ 53 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35678999999999998765543
No 379
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=56.10 E-value=10 Score=39.77 Aligned_cols=34 Identities=21% Similarity=0.303 Sum_probs=28.8
Q ss_pred ceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEc
Q 045263 534 NRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMV 567 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val~ail~~l~~g~qvlila 567 (742)
-.+..|..|.|||.++...+......|++++++-
T Consensus 16 i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 49 (324)
T 3zq6_A 16 FVFIGGKGGVGKTTISAATALWMARSGKKTLVIS 49 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEe
Confidence 3477789999999999888888888899998875
No 380
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=55.97 E-value=9.2 Score=42.76 Aligned_cols=38 Identities=26% Similarity=0.297 Sum_probs=24.6
Q ss_pred cCCCCCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEc
Q 045263 527 LKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMV 567 (742)
Q Consensus 527 ~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlila 567 (742)
+....|..++|.||+|+|||..+-..+-.. +...+.+.
T Consensus 44 ~g~~~p~gvLL~GppGtGKT~Laraia~~~---~~~f~~is 81 (476)
T 2ce7_A 44 IGARMPKGILLVGPPGTGKTLLARAVAGEA---NVPFFHIS 81 (476)
T ss_dssp TTCCCCSEEEEECCTTSSHHHHHHHHHHHH---TCCEEEEE
T ss_pred cCCCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCeeeCC
Confidence 333445679999999999998765444322 44454443
No 381
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=55.92 E-value=6.7 Score=36.95 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=17.9
Q ss_pred CCceEEEccCCChHHHHHHHHH
Q 045263 532 PMNRLLQGDVGCGKTVVAFLAC 553 (742)
Q Consensus 532 ~~~~LL~a~TGSGKT~val~ai 553 (742)
++.+++.|+.|||||.++-...
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~ 26 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALA 26 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999998875544
No 382
>3pgz_A Single-stranded DNA-binding protein; ssgcid, single-strand binding protein, structural genomics center for infectious disease; 2.10A {Bartonella henselae}
Probab=55.50 E-value=40 Score=33.02 Aligned_cols=80 Identities=13% Similarity=0.223 Sum_probs=43.4
Q ss_pred CeEEEEEEEEEeeccc-cCCCceEEEEEEeeeeccCCCCCCcceeeecCCCceeEEEEEeeeeecccccccchhHhhhcc
Q 045263 258 QYFIFIGEIISSRGMK-AGCSFSFLEVIVGCEIADTETTSGDEVVNIDSGQKKKIYLHLKKFFRGTRFTSIPFLKSIEGK 336 (742)
Q Consensus 258 e~vti~G~V~~~~~~~-~~~~~~~l~v~v~~~~~~~~~~~~~~~~~~~~g~~~~i~l~~~~ff~~~~Ffn~pfl~~~~~~ 336 (742)
..|++.|+|..-..++ ...+..+.++.|.+.....+ .++|... . -..||+.+.|-. ..-..+.+.
T Consensus 27 NkV~LiGrLg~DPElR~t~~G~~Va~FsLAvnr~~kd---------~~~Ge~~--e--~Tdwi~Vvawgk-~lAe~~~~y 92 (193)
T 3pgz_A 27 NKVILIGNLGADPEIRRLNSGDQVANLRIATSESWRD---------RNTNERK--E--RTEWHNIVIFNE-NLVKVVEQY 92 (193)
T ss_dssp EEEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEECC---------C-----E--E--EEEEEEEEECCH-HHHHHHHHH
T ss_pred CEEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceec---------cCCCcee--e--eeEEEEEEEECH-HHHHHHHhh
Confidence 3589999998653333 34556777777664322110 0122211 0 124565555531 111223467
Q ss_pred ccCCcEEEEEEEEee
Q 045263 337 HKVGEFVCVSGKVRA 351 (742)
Q Consensus 337 l~~G~~v~v~GKv~~ 351 (742)
|++|+.|+|.|++..
T Consensus 93 L~KGs~V~VeGrL~t 107 (193)
T 3pgz_A 93 LKKGSKIYIEGQLQT 107 (193)
T ss_dssp CCTTCEEEEEEEEEE
T ss_pred cCCCCEEEEEEEEEE
Confidence 999999999999975
No 383
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=55.45 E-value=6.9 Score=39.55 Aligned_cols=21 Identities=29% Similarity=0.290 Sum_probs=16.9
Q ss_pred ceEEEccCCChHHHHHHHHHH
Q 045263 534 NRLLQGDVGCGKTVVAFLACM 554 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val~ail 554 (742)
.++|.|++|||||.++...+-
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 468999999999998765543
No 384
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=55.37 E-value=6.1 Score=42.01 Aligned_cols=21 Identities=29% Similarity=0.311 Sum_probs=17.4
Q ss_pred ceEEEccCCChHHHHHHHHHH
Q 045263 534 NRLLQGDVGCGKTVVAFLACM 554 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val~ail 554 (742)
.++|.||||||||.++...+.
T Consensus 7 ~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 579999999999988765544
No 385
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=55.36 E-value=12 Score=35.67 Aligned_cols=33 Identities=12% Similarity=0.035 Sum_probs=23.3
Q ss_pred CCceEEEccCCChHHHHHHHHHHHHHhcCCeEE
Q 045263 532 PMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAA 564 (742)
Q Consensus 532 ~~~~LL~a~TGSGKT~val~ail~~l~~g~qvl 564 (742)
++.++|.|+.|||||.++-...-..-..+..+.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~ 42 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVK 42 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEE
Confidence 467899999999999987655544333455553
No 386
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=55.26 E-value=9.4 Score=40.94 Aligned_cols=17 Identities=29% Similarity=0.417 Sum_probs=14.6
Q ss_pred ceEEEccCCChHHHHHH
Q 045263 534 NRLLQGDVGCGKTVVAF 550 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val 550 (742)
.++|.||||||||...-
T Consensus 125 ~i~I~GptGSGKTTlL~ 141 (356)
T 3jvv_A 125 LVLVTGPTGSGKSTTLA 141 (356)
T ss_dssp EEEEECSTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 78999999999997643
No 387
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=55.24 E-value=8.6 Score=40.12 Aligned_cols=35 Identities=23% Similarity=0.205 Sum_probs=27.1
Q ss_pred CceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEc
Q 045263 533 MNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMV 567 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~ail~~l~~g~qvlila 567 (742)
..+.+.|+.|+|||.++...+......|.+++++.
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~ 133 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVG 133 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 35678899999999887766666566788888775
No 388
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=55.17 E-value=8.3 Score=36.14 Aligned_cols=22 Identities=36% Similarity=0.377 Sum_probs=17.7
Q ss_pred CceEEEccCCChHHHHHHHHHH
Q 045263 533 MNRLLQGDVGCGKTVVAFLACM 554 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~ail 554 (742)
..+++.|+.|||||.++-....
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 4789999999999988765443
No 389
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=55.14 E-value=10 Score=39.90 Aligned_cols=33 Identities=15% Similarity=0.200 Sum_probs=28.6
Q ss_pred ceEEEccCCChHHHHHHHHHHHHHhcCCeEEEE
Q 045263 534 NRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFM 566 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val~ail~~l~~g~qvlil 566 (742)
-.+..|..|.|||.++...+......|++++++
T Consensus 21 i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllv 53 (329)
T 2woo_A 21 WIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLI 53 (329)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEE
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 457789999999999988888888889999887
No 390
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=55.05 E-value=15 Score=36.96 Aligned_cols=31 Identities=23% Similarity=0.444 Sum_probs=25.5
Q ss_pred EEEccCCChHHHHHHHHHHHHHhcCCeEEEE
Q 045263 536 LLQGDVGCGKTVVAFLACMEVIGSGYQAAFM 566 (742)
Q Consensus 536 LL~a~TGSGKT~val~ail~~l~~g~qvlil 566 (742)
+..+..|.|||.++...+......|++++++
T Consensus 23 v~s~kGGvGKTT~a~nLA~~la~~G~~Vlli 53 (262)
T 2ph1_A 23 VMSGKGGVGKSTVTALLAVHYARQGKKVGIL 53 (262)
T ss_dssp EECSSSCTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEcCCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 4456789999999988877777789999886
No 391
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=54.74 E-value=6.5 Score=38.63 Aligned_cols=22 Identities=23% Similarity=0.333 Sum_probs=17.9
Q ss_pred CCceEEEccCCChHHHHHHHHH
Q 045263 532 PMNRLLQGDVGCGKTVVAFLAC 553 (742)
Q Consensus 532 ~~~~LL~a~TGSGKT~val~ai 553 (742)
++.++|.|++|||||.++-..+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4678999999999998875443
No 392
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=54.64 E-value=12 Score=38.51 Aligned_cols=62 Identities=8% Similarity=-0.001 Sum_probs=40.0
Q ss_pred HHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHHHHh
Q 045263 520 ISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHLLKL 583 (742)
Q Consensus 520 I~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT~~La~Q~~~~l~~~ 583 (742)
+++++.+ .-......|+.|++|+|||..++.-+...+.+|-+++++.-.+ -..|+.+++..+
T Consensus 10 LD~~l~G-Gl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~e-~~~~l~~~~~~~ 71 (260)
T 3bs4_A 10 LDREIGK-IKKHSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSISY-PLQLIIRILSRF 71 (260)
T ss_dssp HHHHHCC-BCTTCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECSS-CHHHHHHHHHHT
T ss_pred HHHHhCC-CCCCCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEeC-CHHHHHHHHHHc
Confidence 4555543 1112235688889999999777777777888899999887543 234455555443
No 393
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=54.54 E-value=8.5 Score=36.86 Aligned_cols=22 Identities=27% Similarity=0.356 Sum_probs=17.7
Q ss_pred CCceEEEccCCChHHHHHHHHH
Q 045263 532 PMNRLLQGDVGCGKTVVAFLAC 553 (742)
Q Consensus 532 ~~~~LL~a~TGSGKT~val~ai 553 (742)
++.++|.|+.|||||.++-...
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~ 39 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIA 39 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999998875443
No 394
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=54.25 E-value=6.5 Score=41.64 Aligned_cols=21 Identities=29% Similarity=0.300 Sum_probs=17.0
Q ss_pred ceEEEccCCChHHHHHHHHHH
Q 045263 534 NRLLQGDVGCGKTVVAFLACM 554 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val~ail 554 (742)
-++|.||||||||.++...+.
T Consensus 12 ~i~i~GptgsGKt~la~~La~ 32 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRK 32 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 468899999999988766554
No 395
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=54.11 E-value=12 Score=39.17 Aligned_cols=35 Identities=17% Similarity=0.121 Sum_probs=24.6
Q ss_pred CceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEc
Q 045263 533 MNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMV 567 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~ail~~l~~g~qvlila 567 (742)
.-+.+.|++|||||...-..+-..-..++++++..
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g 135 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 135 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 35789999999999876554443334566777764
No 396
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=54.07 E-value=12 Score=35.95 Aligned_cols=31 Identities=19% Similarity=0.141 Sum_probs=21.0
Q ss_pred CCceEEEccCCChHHHHHHHHHHHHHhcCCe
Q 045263 532 PMNRLLQGDVGCGKTVVAFLACMEVIGSGYQ 562 (742)
Q Consensus 532 ~~~~LL~a~TGSGKT~val~ail~~l~~g~q 562 (742)
+..+.|.|+.|||||.++-..+-..-..|.-
T Consensus 25 g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~ 55 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTLACALNQMLYQKGKL 55 (200)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCce
Confidence 3478899999999998875544333334543
No 397
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=54.07 E-value=25 Score=36.24 Aligned_cols=28 Identities=11% Similarity=0.036 Sum_probs=23.7
Q ss_pred ccCCChHHHHHHHHHHHHHhcCCeEEEE
Q 045263 539 GDVGCGKTVVAFLACMEVIGSGYQAAFM 566 (742)
Q Consensus 539 a~TGSGKT~val~ail~~l~~g~qvlil 566 (742)
+..|.|||.+++..+......|++|+++
T Consensus 100 ~kgG~GKTtva~nLA~~lA~~G~rVLLI 127 (286)
T 3la6_A 100 VSPSIGMTFVCANLAAVISQTNKRVLLI 127 (286)
T ss_dssp SSSSSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCCCCcHHHHHHHHHHHHHhCCCCEEEE
Confidence 4568999999988887777889999988
No 398
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=53.94 E-value=7.2 Score=39.07 Aligned_cols=24 Identities=17% Similarity=0.124 Sum_probs=19.7
Q ss_pred CCCceEEEccCCChHHHHHHHHHH
Q 045263 531 VPMNRLLQGDVGCGKTVVAFLACM 554 (742)
Q Consensus 531 ~~~~~LL~a~TGSGKT~val~ail 554 (742)
.+|.++|.|+.|||||.++-...-
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999988765543
No 399
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=53.79 E-value=13 Score=42.40 Aligned_cols=34 Identities=18% Similarity=0.342 Sum_probs=29.0
Q ss_pred CceEEEccCCChHHHHHHHHHHHHHhcCCeEEEE
Q 045263 533 MNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFM 566 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~ail~~l~~g~qvlil 566 (742)
.-.++.|..|.|||.++...+......|++++++
T Consensus 9 ~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlv 42 (589)
T 1ihu_A 9 PYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLV 42 (589)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEE
Confidence 3568889999999999988888888889999884
No 400
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=53.71 E-value=7.8 Score=44.44 Aligned_cols=36 Identities=28% Similarity=0.292 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHH
Q 045263 516 QLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLAC 553 (742)
Q Consensus 516 Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ai 553 (742)
|..+++.+......+. .++|.||+|+|||.++-..+
T Consensus 46 ~~~~l~~l~~~i~~g~--~vll~Gp~GtGKTtlar~ia 81 (604)
T 3k1j_A 46 QEHAVEVIKTAANQKR--HVLLIGEPGTGKSMLGQAMA 81 (604)
T ss_dssp CHHHHHHHHHHHHTTC--CEEEECCTTSSHHHHHHHHH
T ss_pred chhhHhhccccccCCC--EEEEEeCCCCCHHHHHHHHh
Confidence 4556666655554443 88999999999998764443
No 401
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=53.66 E-value=12 Score=36.34 Aligned_cols=35 Identities=17% Similarity=0.169 Sum_probs=23.7
Q ss_pred CCceEEEccCCChHHHHHHHHHHHHH-hcCCeEEEE
Q 045263 532 PMNRLLQGDVGCGKTVVAFLACMEVI-GSGYQAAFM 566 (742)
Q Consensus 532 ~~~~LL~a~TGSGKT~val~ail~~l-~~g~qvlil 566 (742)
++.+++.|+.|||||.++-...-..- ..|..++++
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~ 60 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRL 60 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEE
Confidence 45789999999999987755443322 346555555
No 402
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=53.61 E-value=8.4 Score=36.42 Aligned_cols=22 Identities=18% Similarity=0.099 Sum_probs=17.7
Q ss_pred CceEEEccCCChHHHHHHHHHH
Q 045263 533 MNRLLQGDVGCGKTVVAFLACM 554 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~ail 554 (742)
+.++|.|+.|||||.++-...-
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999988755443
No 403
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=53.52 E-value=8.9 Score=37.86 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=19.6
Q ss_pred CCCceEEEccCCChHHHHHHHHHHH
Q 045263 531 VPMNRLLQGDVGCGKTVVAFLACME 555 (742)
Q Consensus 531 ~~~~~LL~a~TGSGKT~val~ail~ 555 (742)
.++++++.|++|||||.++-..+..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~ 39 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKN 39 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999887655443
No 404
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=53.46 E-value=6.5 Score=41.75 Aligned_cols=21 Identities=19% Similarity=0.224 Sum_probs=16.9
Q ss_pred ceEEEccCCChHHHHHHHHHH
Q 045263 534 NRLLQGDVGCGKTVVAFLACM 554 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val~ail 554 (742)
-++|.||||||||.++...+.
T Consensus 5 ~i~i~GptgsGKt~la~~La~ 25 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAK 25 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 468899999999988766543
No 405
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=53.38 E-value=11 Score=38.89 Aligned_cols=52 Identities=19% Similarity=0.012 Sum_probs=30.9
Q ss_pred HHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHH
Q 045263 500 LTKKLLRALPYSLTSSQL-SAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACM 554 (742)
Q Consensus 500 l~~~~~~~lpf~Lt~~Q~-~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail 554 (742)
..-.|++..+|. +.+- .++..+++.. .+....+++.||+|+|||..+...+.
T Consensus 74 ~i~~~l~~qg~~--~~~~~~~l~~~l~~~-~~~~n~~~l~GppgtGKt~~a~ala~ 126 (267)
T 1u0j_A 74 RIYKILELNGYD--PQYAASVFLGWATKK-FGKRNTIWLFGPATTGKTNIAEAIAH 126 (267)
T ss_dssp HHHHHHHHTTCC--HHHHHHHHHHHHTTC-STTCCEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHcCCC--HHHHHHHHHHHHhCC-CCCCcEEEEECCCCCCHHHHHHHHHh
Confidence 345556666665 4442 2344445431 12223589999999999988764443
No 406
>3ulp_A Single-strand binding protein; OB-fold, DNA binding, single-stranded DNA, apicoplast, DNA B protein-DNA complex; HET: DNA; 2.10A {Plasmodium falciparum}
Probab=53.34 E-value=55 Score=29.32 Aligned_cols=79 Identities=13% Similarity=0.139 Sum_probs=43.6
Q ss_pred eEEEEEEEEEeeccc-cCCCceEEEEEEeeeeccCCCCCCcceeeecCCCceeEEEEEeeeeecccccccchhHhhhccc
Q 045263 259 YFIFIGEIISSRGMK-AGCSFSFLEVIVGCEIADTETTSGDEVVNIDSGQKKKIYLHLKKFFRGTRFTSIPFLKSIEGKH 337 (742)
Q Consensus 259 ~vti~G~V~~~~~~~-~~~~~~~l~v~v~~~~~~~~~~~~~~~~~~~~g~~~~i~l~~~~ff~~~~Ffn~pfl~~~~~~l 337 (742)
.|++.|++.+-...+ ...+..+.++.|.+.....+ .++|... . -..||+.+.|- ...-..+.+.+
T Consensus 8 ~v~l~Grl~~dpelr~t~~G~~v~~f~lA~~~~~~~---------~~~G~~~--~--~t~~~~v~~wg-~~~Ae~~~~~l 73 (124)
T 3ulp_A 8 KIMLIGRVGCEPDIKILNGGDKVATFSLATNEFWRD---------RNTNELK--S--KTDWHRIVVYD-QNIVDLIDKYL 73 (124)
T ss_dssp EEEEEEEECSCCEEEECTTSCEEEEEEEEEEEEEEC---------TTTCCEE--E--EEEEEEEEECC-HHHHHHHHHHC
T ss_pred EEEEEEEECCCcEEEECCCCCEEEEEEEEEccceec---------ccCCcEe--c--ccEEEEEEEEE-chHHHHHHhhc
Confidence 588999998654333 34556677766654221110 0123210 0 02455555553 01112244679
Q ss_pred cCCcEEEEEEEEee
Q 045263 338 KVGEFVCVSGKVRA 351 (742)
Q Consensus 338 ~~G~~v~v~GKv~~ 351 (742)
++|+.|+|.|++..
T Consensus 74 ~KG~~V~V~G~L~~ 87 (124)
T 3ulp_A 74 RKGRRVYVQGSLHT 87 (124)
T ss_dssp CTTCEEEEEEEEEE
T ss_pred CCCCEEEEEEEEEe
Confidence 99999999999974
No 407
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=53.30 E-value=12 Score=39.75 Aligned_cols=33 Identities=18% Similarity=0.315 Sum_probs=28.2
Q ss_pred eEEEccCCChHHHHHHHHHHHHHhcCCeEEEEc
Q 045263 535 RLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMV 567 (742)
Q Consensus 535 ~LL~a~TGSGKT~val~ail~~l~~g~qvlila 567 (742)
.+..+..|.|||.++...+......|++++++-
T Consensus 29 ~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 61 (349)
T 3ug7_A 29 IMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVS 61 (349)
T ss_dssp EEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred EEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 467788999999999888888788899998885
No 408
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=53.29 E-value=7.2 Score=38.08 Aligned_cols=23 Identities=26% Similarity=0.242 Sum_probs=18.5
Q ss_pred CCceEEEccCCChHHHHHHHHHH
Q 045263 532 PMNRLLQGDVGCGKTVVAFLACM 554 (742)
Q Consensus 532 ~~~~LL~a~TGSGKT~val~ail 554 (742)
.|.++|.|+.|||||.++-..+.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46889999999999988755543
No 409
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=53.28 E-value=8.2 Score=36.56 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=17.4
Q ss_pred CceEEEccCCChHHHHHHHHHH
Q 045263 533 MNRLLQGDVGCGKTVVAFLACM 554 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~ail 554 (742)
|.++|.|+.|||||.++-...-
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCccCHHHHHHHHHH
Confidence 4678999999999987655443
No 410
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=53.22 E-value=15 Score=37.41 Aligned_cols=28 Identities=11% Similarity=0.059 Sum_probs=23.3
Q ss_pred ccCCChHHHHHHHHHHHHHhcCCeEEEE
Q 045263 539 GDVGCGKTVVAFLACMEVIGSGYQAAFM 566 (742)
Q Consensus 539 a~TGSGKT~val~ail~~l~~g~qvlil 566 (742)
+.-|.|||.++...+......|++|+++
T Consensus 44 ~KGGvGKTT~a~nLA~~la~~G~rVlli 71 (298)
T 2oze_A 44 FKGGVGKSKLSTMFAYLTDKLNLKVLMI 71 (298)
T ss_dssp SSSSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCchHHHHHHHHHHHHHhCCCeEEEE
Confidence 4789999999887777777789999885
No 411
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=53.04 E-value=8.7 Score=36.21 Aligned_cols=23 Identities=17% Similarity=0.096 Sum_probs=18.4
Q ss_pred CCceEEEccCCChHHHHHHHHHH
Q 045263 532 PMNRLLQGDVGCGKTVVAFLACM 554 (742)
Q Consensus 532 ~~~~LL~a~TGSGKT~val~ail 554 (742)
++.++|.|+.|||||.++-...-
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999998755543
No 412
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=53.04 E-value=6 Score=37.19 Aligned_cols=22 Identities=23% Similarity=0.205 Sum_probs=17.9
Q ss_pred CCceEEEccCCChHHHHHHHHH
Q 045263 532 PMNRLLQGDVGCGKTVVAFLAC 553 (742)
Q Consensus 532 ~~~~LL~a~TGSGKT~val~ai 553 (742)
++.+++.|+.|||||.++-...
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999998875544
No 413
>3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii}
Probab=53.04 E-value=47 Score=31.32 Aligned_cols=78 Identities=13% Similarity=0.217 Sum_probs=43.9
Q ss_pred CeEEEEEEEEEeeccc-cCCCceEEEEEEeeeeccCCCCCCcceeeec-CCCceeEEEEEeeeeecccccccchhHhhhc
Q 045263 258 QYFIFIGEIISSRGMK-AGCSFSFLEVIVGCEIADTETTSGDEVVNID-SGQKKKIYLHLKKFFRGTRFTSIPFLKSIEG 335 (742)
Q Consensus 258 e~vti~G~V~~~~~~~-~~~~~~~l~v~v~~~~~~~~~~~~~~~~~~~-~g~~~~i~l~~~~ff~~~~Ffn~pfl~~~~~ 335 (742)
..|++.|+|..-...+ ...+..+.++.|.+.... .+. +|.... -..||+.+.|-.. ...+.+
T Consensus 9 N~V~LiGrL~~dPelr~t~~G~~v~~f~lA~~~~~----------~d~~~Ge~~e----~t~~i~vv~wg~~--Ae~~~~ 72 (158)
T 3tqy_A 9 NKVILIGNLGQDPEVRYTPNGNAVANVTLATSTTW----------RDKQTGELQE----RTEWHRIAFFNRL--AEIVGE 72 (158)
T ss_dssp EEEEEEEEESSSCEEEECTTCCEEEEEEEEEEEEE----------ECTTTCCEEE----EEEEEEEEEETHH--HHHHHH
T ss_pred CEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCce----------eccCCCCEee----eeEEEEEEEEhHH--HHHHHh
Confidence 3589999998653333 344566777776642211 111 232110 0145554445321 122446
Q ss_pred cccCCcEEEEEEEEee
Q 045263 336 KHKVGEFVCVSGKVRA 351 (742)
Q Consensus 336 ~l~~G~~v~v~GKv~~ 351 (742)
.|++|+.|+|.|++..
T Consensus 73 ~l~KG~~V~VeG~L~~ 88 (158)
T 3tqy_A 73 YLRKGSKIYIEGSLRT 88 (158)
T ss_dssp HCCTTCEEEEEEEEEE
T ss_pred hcCCCCEEEEEEEEEe
Confidence 6999999999999975
No 414
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U*
Probab=52.88 E-value=7.8 Score=33.91 Aligned_cols=30 Identities=17% Similarity=0.213 Sum_probs=24.4
Q ss_pred cCCcCCCCCHHHHHHHH-hCCCCCHhHHhhc
Q 045263 210 CISCVPGLSKRLYHQLE-NCGFYTLRKLLHH 239 (742)
Q Consensus 210 ~I~~LkGVG~k~~~~L~-klGI~Tv~DLL~~ 239 (742)
.+..|||||+++++..- .-++.+++||+..
T Consensus 27 eL~~lpGIG~~~A~~IV~~GpF~s~edL~~V 57 (97)
T 3arc_U 27 AFIQYRGLYPTLAKLIVKNAPYESVEDVLNI 57 (97)
T ss_dssp GGGGSTTCTTHHHHHHHHHCCCSSGGGGGGC
T ss_pred HHhHCCCCCHHHHHHHHHcCCCCCHHHHHhc
Confidence 46679999999999884 4578999999865
No 415
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=52.66 E-value=6.9 Score=38.89 Aligned_cols=19 Identities=37% Similarity=0.560 Sum_probs=15.6
Q ss_pred ceEEEccCCChHHHHHHHH
Q 045263 534 NRLLQGDVGCGKTVVAFLA 552 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val~a 552 (742)
.++|.||||+|||..++..
T Consensus 36 ~ilI~GpsGsGKStLA~~L 54 (205)
T 2qmh_A 36 GVLITGDSGVGKSETALEL 54 (205)
T ss_dssp EEEEECCCTTTTHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5799999999999766544
No 416
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A*
Probab=52.65 E-value=4.8 Score=32.18 Aligned_cols=20 Identities=15% Similarity=0.330 Sum_probs=15.4
Q ss_pred cCCcCCCCCHHHHHHH-HhCC
Q 045263 210 CISCVPGLSKRLYHQL-ENCG 229 (742)
Q Consensus 210 ~I~~LkGVG~k~~~~L-~klG 229 (742)
.++.||||||++.+.| +..|
T Consensus 5 ~L~~IpGIG~kr~~~LL~~Fg 25 (63)
T 2a1j_A 5 FLLKMPGVNAKNCRSLMHHVK 25 (63)
T ss_dssp HHHTSTTCCHHHHHHHHHHCS
T ss_pred HHHcCCCCCHHHHHHHHHHcC
Confidence 4567999999998887 4444
No 417
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=52.64 E-value=14 Score=39.15 Aligned_cols=37 Identities=19% Similarity=0.212 Sum_probs=25.6
Q ss_pred CCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEc
Q 045263 531 VPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMV 567 (742)
Q Consensus 531 ~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlila 567 (742)
.+.-+.+.||+|||||...-..+...-..++++++..
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g 164 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAA 164 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEe
Confidence 3457899999999999876554444444566776663
No 418
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=52.55 E-value=6.7 Score=45.09 Aligned_cols=17 Identities=29% Similarity=0.409 Sum_probs=15.0
Q ss_pred ceEEEccCCChHHHHHH
Q 045263 534 NRLLQGDVGCGKTVVAF 550 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val 550 (742)
++|+.||+|+|||..+-
T Consensus 329 ~vLL~GppGtGKT~LAr 345 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQ 345 (595)
T ss_dssp CEEEEESSCCTHHHHHH
T ss_pred ceEEECCCchHHHHHHH
Confidence 79999999999998653
No 419
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=52.31 E-value=8.3 Score=41.47 Aligned_cols=39 Identities=15% Similarity=0.190 Sum_probs=26.9
Q ss_pred CCHHHHHHHHH----HHHhcCCCCCCceEEEccCCChHHHHHH
Q 045263 512 LTSSQLSAISE----IIWDLKQPVPMNRLLQGDVGCGKTVVAF 550 (742)
Q Consensus 512 Lt~~Q~~aI~~----I~~~~~~~~~~~~LL~a~TGSGKT~val 550 (742)
....|.++++. +....-.+....++..|.||||||.+..
T Consensus 57 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 99 (355)
T 1goj_A 57 MSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMM 99 (355)
T ss_dssp TTCCHHHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHHHT
T ss_pred CCCccHHHHHHHHHHHHHHHhCCCcceEEEECCCCCCcceEee
Confidence 45567776654 3334445555678999999999998764
No 420
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB: 2ccz_A
Probab=52.25 E-value=1.4e+02 Score=27.34 Aligned_cols=78 Identities=10% Similarity=0.090 Sum_probs=45.9
Q ss_pred CeEEEEEEEEEeeccc-cCCCceEEEEEEeeeeccCCCCCCcceeeecCCCceeEEEEEeeeeecccccccchhHhhhcc
Q 045263 258 QYFIFIGEIISSRGMK-AGCSFSFLEVIVGCEIADTETTSGDEVVNIDSGQKKKIYLHLKKFFRGTRFTSIPFLKSIEGK 336 (742)
Q Consensus 258 e~vti~G~V~~~~~~~-~~~~~~~l~v~v~~~~~~~~~~~~~~~~~~~~g~~~~i~l~~~~ff~~~~Ffn~pfl~~~~~~ 336 (742)
..|++.|++..-...| ...+..+.++.|..... .+++|..... ..|++.+.|-.. ...+.+.
T Consensus 20 NkViLiGrL~~DPElRyTpsG~~Va~ftLA~~~~-----------~~~~G~~~~~----~~~i~vv~wGk~--AE~~~~y 82 (134)
T 1v1q_A 20 NRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSV-----------QEEAGFHRQA----WCQMPVIVSGHE--NQAITHS 82 (134)
T ss_dssp EEEEEEEEEEEEEEEEECTTCCEEEEEEEEEEEE-----------EEETTEEEEE----EEEEEEEEESTG--GGGGGTT
T ss_pred eEEEEEEEECcCCceEECCCCCEEEEEEEEEeCc-----------CcCCCCEecc----eEEEEEEEEhHH--HHHHHHh
Confidence 3689999998765444 34567777777764211 1222321111 124444445321 1223466
Q ss_pred ccCCcEEEEEEEEeec
Q 045263 337 HKVGEFVCVSGKVRAM 352 (742)
Q Consensus 337 l~~G~~v~v~GKv~~~ 352 (742)
+++|..|+|.|++...
T Consensus 83 l~KGs~V~VeGrL~tr 98 (134)
T 1v1q_A 83 ITVGSRITVQGFISCH 98 (134)
T ss_dssp CCTTCEEEEEEEEEEE
T ss_pred cCCCCEEEEEEEEEEE
Confidence 8999999999999864
No 421
>3mfi_A DNA polymerase ETA; DNA damage, DNA repair, DNA replication, DNA synthesis, NUCL binding, magnesium; HET: DNA DOC TTD DTP; 1.76A {Saccharomyces cerevisiae} PDB: 3mfh_A* 3oha_A* 3ohb_A* 2r8j_A* 2r8k_A* 2wtf_A* 2xgp_A* 2xgq_A* 1jih_A*
Probab=52.08 E-value=5.3 Score=45.22 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=29.5
Q ss_pred hhhh---ccCCcCCCCCHHHHHHHHhC-CC---CCHhHHhhcCCC
Q 045263 205 PLLD---KCISCVPGLSKRLYHQLENC-GF---YTLRKLLHHFPR 242 (742)
Q Consensus 205 ~~L~---~~I~~LkGVG~k~~~~L~kl-GI---~Tv~DLL~~fPr 242 (742)
..|. .||..|.|||+++++.|+++ || +|+.|+-..+|.
T Consensus 300 ~fL~~~~lPV~~l~GIG~~t~~~L~~llGI~~~~ti~~i~~l~~~ 344 (520)
T 3mfi_A 300 DFLDCGKFEITSFWTLGGVLGKELIDVLDLPHENSIKHIRETWPD 344 (520)
T ss_dssp HHHTSSSCCGGGSTTCSSHHHHHHHHHTTCCSSSHHHHHHHHSCS
T ss_pred HHhhccCCcHHHhcCCCHHHHHHHHHhcCCCcccchhhhhhccCC
Confidence 3555 59999999999999999998 99 787554444443
No 422
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=52.00 E-value=13 Score=38.60 Aligned_cols=34 Identities=26% Similarity=0.296 Sum_probs=25.8
Q ss_pred ceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEc
Q 045263 534 NRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMV 567 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val~ail~~l~~g~qvlila 567 (742)
.+.+.|+.|+|||.++...+......|.+++++-
T Consensus 100 ~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 100 LWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (295)
T ss_dssp EEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 5667799999999887666655556678887774
No 423
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=51.82 E-value=9.8 Score=35.52 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=17.2
Q ss_pred ceEEEccCCChHHHHHHHHHH
Q 045263 534 NRLLQGDVGCGKTVVAFLACM 554 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val~ail 554 (742)
+++|.|+.|||||.++-..+-
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 689999999999988755543
No 424
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=51.80 E-value=8.9 Score=37.05 Aligned_cols=36 Identities=19% Similarity=0.151 Sum_probs=23.4
Q ss_pred ceEEEccCCChHHHHHHHHHHHHHh------cCCeEEEEccc
Q 045263 534 NRLLQGDVGCGKTVVAFLACMEVIG------SGYQAAFMVPT 569 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val~ail~~l~------~g~qvlilaPT 569 (742)
-+.|.||+|||||..+...+..... .+..++++-..
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~ 68 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 68 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECC
Confidence 6799999999999876555433222 13456666543
No 425
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=51.73 E-value=15 Score=49.41 Aligned_cols=50 Identities=22% Similarity=0.272 Sum_probs=35.1
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHH
Q 045263 501 TKKLLRALPYSLTSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLA 552 (742)
Q Consensus 501 ~~~~~~~lpf~Lt~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~a 552 (742)
........++.+++.+..-+-.+.+-+... ..++|+||||||||.++-..
T Consensus 894 i~~~~~~~~l~~~~~~~~K~~ql~e~~~~r--~gvmlvGptgsGKTt~~~~L 943 (2695)
T 4akg_A 894 LKDAGQRSGFSMSEEFLKKCMQFYYMQKTQ--QALILVGKAGCGKTATWKTV 943 (2695)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHHHHHHHHHC--SEEEEECSTTSSHHHHHHHH
T ss_pred HHHHHHHcCCcccHHHHHHHHHHHHHHHhc--ceEEEECCCCCCHHHHHHHH
Confidence 344456678888888866666665544322 46899999999999986433
No 426
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=51.65 E-value=11 Score=35.91 Aligned_cols=23 Identities=26% Similarity=0.104 Sum_probs=18.3
Q ss_pred CceEEEccCCChHHHHHHHHHHH
Q 045263 533 MNRLLQGDVGCGKTVVAFLACME 555 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~ail~ 555 (742)
+.+++.|+.|||||.++-.....
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 57899999999999887655443
No 427
>2kz3_A Putative uncharacterized protein RAD51L3; RAD51D, homologous recombination, unknown function; NMR {Homo sapiens}
Probab=51.52 E-value=12 Score=31.66 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=26.7
Q ss_pred CCcCCCCCHHHHHHHHhCCCCCHhHHhhcCC
Q 045263 211 ISCVPGLSKRLYHQLENCGFYTLRKLLHHFP 241 (742)
Q Consensus 211 I~~LkGVG~k~~~~L~klGI~Tv~DLL~~fP 241 (742)
+.-.||+.+...+.|++.||.|+.|++.-=|
T Consensus 6 ~~~~p~Lse~~~~~L~~~~I~Tv~Dfl~~d~ 36 (83)
T 2kz3_A 6 VGLCPGLTEEMIQLLRSHRIKTVVDLVSADL 36 (83)
T ss_dssp TTSSTTCCHHHHHHHHHTTCCCHHHHTTSCH
T ss_pred cccCCCCCHHHHHHHHHCCCCCHHHHHhCCH
Confidence 4455999999999999999999999987544
No 428
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=51.48 E-value=8.2 Score=42.33 Aligned_cols=22 Identities=18% Similarity=0.132 Sum_probs=17.8
Q ss_pred CceEEEccCCChHHHHHHHHHH
Q 045263 533 MNRLLQGDVGCGKTVVAFLACM 554 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~ail 554 (742)
....|.||+|+|||..+...+-
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar 196 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQ 196 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHH
Confidence 3789999999999998765443
No 429
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=51.44 E-value=10 Score=35.03 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=17.5
Q ss_pred CceEEEccCCChHHHHHHHHHH
Q 045263 533 MNRLLQGDVGCGKTVVAFLACM 554 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~ail 554 (742)
+.++|.|+.|||||.++-...-
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999988755443
No 430
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=51.11 E-value=17 Score=36.27 Aligned_cols=29 Identities=17% Similarity=0.162 Sum_probs=24.5
Q ss_pred cCCChHHHHHHHHHHHHHhcCCeEEEEcc
Q 045263 540 DVGCGKTVVAFLACMEVIGSGYQAAFMVP 568 (742)
Q Consensus 540 ~TGSGKT~val~ail~~l~~g~qvlilaP 568 (742)
+||+|||.+.+..+......|.++.++=|
T Consensus 13 ~t~vGKT~vt~~L~~~l~~~G~~V~~~KP 41 (228)
T 3of5_A 13 DTEVGKTYISTKLIEVCEHQNIKSLCLKP 41 (228)
T ss_dssp SSSSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred CCCCCHHHHHHHHHHHHHHCCCeeEEecc
Confidence 47999999998888877788998888765
No 431
>3lgj_A Single-stranded DNA-binding protein; niaid, CAT scratch fever, rochalimaea, LYME disease, ALS collaborative crystallography, DNA replication; 2.50A {Bartonella henselae}
Probab=51.00 E-value=35 Score=32.61 Aligned_cols=78 Identities=17% Similarity=0.152 Sum_probs=42.5
Q ss_pred eEEEEEEEEEeeccc-cCCCceEEEEEEeeeeccCCCCCCcceeeecCCCc--eeEEEEEeeeeecccccccchhHhhhc
Q 045263 259 YFIFIGEIISSRGMK-AGCSFSFLEVIVGCEIADTETTSGDEVVNIDSGQK--KKIYLHLKKFFRGTRFTSIPFLKSIEG 335 (742)
Q Consensus 259 ~vti~G~V~~~~~~~-~~~~~~~l~v~v~~~~~~~~~~~~~~~~~~~~g~~--~~i~l~~~~ff~~~~Ffn~pfl~~~~~ 335 (742)
.|++.|+|..-...+ ...+..+.++.|.+.....+ .++|.. .+ .|++.+.|.. ..-..+.+
T Consensus 25 kV~LiGrL~~DPelr~t~~G~~v~~FslAv~~~~~~---------~~~Ge~~~~t------~~i~vv~wg~-~lAe~~~~ 88 (169)
T 3lgj_A 25 KVMLIGYLGDDPESKTMTSGAEVVNFRMATFESYMN---------KNTHQKVEKT------EWHSVVVFNP-HFAKIALQ 88 (169)
T ss_dssp EEEEEEEESSCCEEEECTTSCEEEEEEEEEEC---------------------CE------EEEEEEECCH-HHHHHHHH
T ss_pred EEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceec---------ccCCcccccc------EEEEEEEeCH-HHHHHHHH
Confidence 589999998653333 34556677776664221110 011211 12 4555445532 11223456
Q ss_pred cccCCcEEEEEEEEeec
Q 045263 336 KHKVGEFVCVSGKVRAM 352 (742)
Q Consensus 336 ~l~~G~~v~v~GKv~~~ 352 (742)
.|++|+.|+|.|++...
T Consensus 89 ~l~KG~~V~VeGrL~~r 105 (169)
T 3lgj_A 89 YLHKGSKVYIEGKLQTR 105 (169)
T ss_dssp HCCTTCEEEEEEEEEEE
T ss_pred hCCCCCEEEEEEEEEEE
Confidence 79999999999999753
No 432
>2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori}
Probab=50.89 E-value=45 Score=30.46 Aligned_cols=77 Identities=12% Similarity=0.103 Sum_probs=43.3
Q ss_pred eEEEEEEEEEeeccc-cCCCceEEEEEEeeeeccCCCCCCcceeeecCCCceeEEEEEeeeeecccccccchhHhhhccc
Q 045263 259 YFIFIGEIISSRGMK-AGCSFSFLEVIVGCEIADTETTSGDEVVNIDSGQKKKIYLHLKKFFRGTRFTSIPFLKSIEGKH 337 (742)
Q Consensus 259 ~vti~G~V~~~~~~~-~~~~~~~l~v~v~~~~~~~~~~~~~~~~~~~~g~~~~i~l~~~~ff~~~~Ffn~pfl~~~~~~l 337 (742)
.|++.|+|..-...+ ...+..+.++.|.+.... .+.+|....- ..||..+.|-.. ...+.+.+
T Consensus 4 ~V~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~----------~~~~G~~~~~----t~~~~v~~wg~~--Ae~~~~~l 67 (134)
T 2vw9_A 4 KVIMVGRLTRNVELKYLPSGSAAATIGLATSRRF----------KKQDGTLGEE----VCFIDARLFGRT--AEIANQYL 67 (134)
T ss_dssp CEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEE----------ECSSSCEEEE----EEEEEEEEEHHH--HHHHHHHC
T ss_pred EEEEEEEECCCCEEEECCCCCEEEEEEEEEeCCe----------ECCCCCCccc----cEEEEEEEEcHH--HHHHHHhC
Confidence 488999997654333 345566777766642211 1122321000 145554445321 12344679
Q ss_pred cCCcEEEEEEEEee
Q 045263 338 KVGEFVCVSGKVRA 351 (742)
Q Consensus 338 ~~G~~v~v~GKv~~ 351 (742)
++|+.|.|.|++..
T Consensus 68 ~KG~~V~V~G~L~~ 81 (134)
T 2vw9_A 68 SKGSSVLIEGRLTY 81 (134)
T ss_dssp CTTCEEEEEEEEEE
T ss_pred CCCCEEEEEEEEEe
Confidence 99999999999975
No 433
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=50.88 E-value=9 Score=36.62 Aligned_cols=21 Identities=19% Similarity=0.112 Sum_probs=16.8
Q ss_pred CCceEEEccCCChHHHHHHHH
Q 045263 532 PMNRLLQGDVGCGKTVVAFLA 552 (742)
Q Consensus 532 ~~~~LL~a~TGSGKT~val~a 552 (742)
++.++|.|+.|||||.++-..
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L 35 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKL 35 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHH
Confidence 456899999999999877443
No 434
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=50.74 E-value=8.3 Score=36.58 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=18.5
Q ss_pred CCCceEEEccCCChHHHHHHHHH
Q 045263 531 VPMNRLLQGDVGCGKTVVAFLAC 553 (742)
Q Consensus 531 ~~~~~LL~a~TGSGKT~val~ai 553 (742)
.++.+.|.|++|||||.++-...
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La 29 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLR 29 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHH
Confidence 45678999999999998875544
No 435
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=50.46 E-value=9.4 Score=37.52 Aligned_cols=22 Identities=36% Similarity=0.353 Sum_probs=17.7
Q ss_pred CceEEEccCCChHHHHHHHHHH
Q 045263 533 MNRLLQGDVGCGKTVVAFLACM 554 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~ail 554 (742)
|.+++.|+.|||||.++-....
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999988755543
No 436
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=50.26 E-value=14 Score=36.11 Aligned_cols=32 Identities=22% Similarity=0.262 Sum_probs=25.7
Q ss_pred EEEccCCChHHHHHHHHHHHHHhcCCeEEEEc
Q 045263 536 LLQGDVGCGKTVVAFLACMEVIGSGYQAAFMV 567 (742)
Q Consensus 536 LL~a~TGSGKT~val~ail~~l~~g~qvlila 567 (742)
+..+..|+|||.+++..+......|++++++=
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (237)
T 1g3q_A 7 IVSGKGGTGKTTVTANLSVALGDRGRKVLAVD 38 (237)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EecCCCCCCHHHHHHHHHHHHHhcCCeEEEEe
Confidence 34567799999998888777777899999874
No 437
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=50.14 E-value=8.4 Score=36.86 Aligned_cols=17 Identities=35% Similarity=0.718 Sum_probs=14.6
Q ss_pred CceEEEccCCChHHHHH
Q 045263 533 MNRLLQGDVGCGKTVVA 549 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~va 549 (742)
|.+.|.||+|||||...
T Consensus 1 ~~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLV 17 (178)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46789999999999765
No 438
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=50.12 E-value=7.9 Score=41.40 Aligned_cols=39 Identities=15% Similarity=0.148 Sum_probs=26.6
Q ss_pred CCCHHHHHHHHHH----HHhcCCCCCCceEEEccCCChHHHHH
Q 045263 511 SLTSSQLSAISEI----IWDLKQPVPMNRLLQGDVGCGKTVVA 549 (742)
Q Consensus 511 ~Lt~~Q~~aI~~I----~~~~~~~~~~~~LL~a~TGSGKT~va 549 (742)
.....|.++++.+ .+..-.+....++..|.||||||.+.
T Consensus 59 ~~~~~Q~~vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 101 (344)
T 4a14_A 59 AEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTM 101 (344)
T ss_dssp CTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEESSTTSSHHHHH
T ss_pred ecCcchhHHHHHHHHHHHHHHHhhcCeeEEEecccCCCceEee
Confidence 3556677776653 23333444456799999999999886
No 439
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=50.08 E-value=16 Score=36.45 Aligned_cols=32 Identities=19% Similarity=0.245 Sum_probs=26.3
Q ss_pred EEEccCCChHHHHHHHHHHHHHhcCCeEEEEc
Q 045263 536 LLQGDVGCGKTVVAFLACMEVIGSGYQAAFMV 567 (742)
Q Consensus 536 LL~a~TGSGKT~val~ail~~l~~g~qvlila 567 (742)
+..+..|+|||.+++..+......|++++++=
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (263)
T 1hyq_A 7 VASGKGGTGKTTITANLGVALAQLGHDVTIVD 38 (263)
T ss_dssp EEESSSCSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EECCCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 45678899999998888777777899999874
No 440
>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...
Probab=50.01 E-value=3.4 Score=42.14 Aligned_cols=28 Identities=14% Similarity=0.316 Sum_probs=0.0
Q ss_pred cCCcCCCCCHHHHHHHHhCCCCCHhHHh
Q 045263 210 CISCVPGLSKRLYHQLENCGFYTLRKLL 237 (742)
Q Consensus 210 ~I~~LkGVG~k~~~~L~klGI~Tv~DLL 237 (742)
.+..|+||||++++.|-+.||.|+.+|.
T Consensus 16 ~L~~IpGIGpk~a~~Ll~~gf~sve~L~ 43 (241)
T 1vq8_Y 16 ELTDISGVGPSKAESLREAGFESVEDVR 43 (241)
T ss_dssp ----------------------------
T ss_pred HHhcCCCCCHHHHHHHHHcCCCCHHHHH
Confidence 6778999999999998766999999885
No 441
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=49.72 E-value=9.7 Score=36.22 Aligned_cols=20 Identities=30% Similarity=0.336 Sum_probs=16.3
Q ss_pred CceEEEccCCChHHHHHHHH
Q 045263 533 MNRLLQGDVGCGKTVVAFLA 552 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~a 552 (742)
+.+.|.|++|||||.++-..
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L 26 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRI 26 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHH
Confidence 47889999999999876443
No 442
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=49.40 E-value=16 Score=39.36 Aligned_cols=35 Identities=17% Similarity=0.121 Sum_probs=24.7
Q ss_pred CceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEc
Q 045263 533 MNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMV 567 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~ail~~l~~g~qvlila 567 (742)
.-+.+.|++|||||...-..+-..-..++++++..
T Consensus 158 ~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g 192 (359)
T 2og2_A 158 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 192 (359)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred eEEEEEcCCCChHHHHHHHHHhhccccCCEEEEec
Confidence 35789999999999876554443334566777764
No 443
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=49.29 E-value=6.8 Score=41.98 Aligned_cols=38 Identities=26% Similarity=0.226 Sum_probs=23.7
Q ss_pred CCHHHHHHHHHHH----HhcCCCCCCceEEEccCCChHHHHH
Q 045263 512 LTSSQLSAISEII----WDLKQPVPMNRLLQGDVGCGKTVVA 549 (742)
Q Consensus 512 Lt~~Q~~aI~~I~----~~~~~~~~~~~LL~a~TGSGKT~va 549 (742)
....|.++++.+. +..-.+....++..|.||||||.+.
T Consensus 71 ~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 71 ATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSM 112 (344)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHHTCCEEEEEESSTTSSHHHHH
T ss_pred CCCCHHHHHHhhccchhhHhhCCCceEEEEecCCCCCCCeEE
Confidence 4455665555432 2222233346799999999999875
No 444
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=49.27 E-value=17 Score=38.11 Aligned_cols=33 Identities=12% Similarity=0.140 Sum_probs=23.7
Q ss_pred HHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHH
Q 045263 517 LSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFL 551 (742)
Q Consensus 517 ~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ 551 (742)
..+++.+.-....+. .+.|.||+|||||...-+
T Consensus 113 ~~vL~~vsl~i~~Ge--~vaIvGpsGsGKSTLl~l 145 (305)
T 2v9p_A 113 INALKLWLKGIPKKN--CLAFIGPPNTGKSMLCNS 145 (305)
T ss_dssp HHHHHHHHHTCTTCS--EEEEECSSSSSHHHHHHH
T ss_pred hhhhccceEEecCCC--EEEEECCCCCcHHHHHHH
Confidence 456777766555543 778999999999976543
No 445
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=49.19 E-value=9 Score=36.26 Aligned_cols=19 Identities=21% Similarity=0.310 Sum_probs=15.4
Q ss_pred ceEEEccCCChHHHHHHHH
Q 045263 534 NRLLQGDVGCGKTVVAFLA 552 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val~a 552 (742)
-+.|.||+|||||.++-..
T Consensus 7 ~i~i~GpsGsGKSTL~~~L 25 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTL 25 (180)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5789999999999876443
No 446
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=49.12 E-value=11 Score=38.85 Aligned_cols=23 Identities=35% Similarity=0.418 Sum_probs=18.1
Q ss_pred CCCceEEEccCCChHHHHHHHHH
Q 045263 531 VPMNRLLQGDVGCGKTVVAFLAC 553 (742)
Q Consensus 531 ~~~~~LL~a~TGSGKT~val~ai 553 (742)
.++.++|.|+.|||||.++-..+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~ 54 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIF 54 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35578999999999998765443
No 447
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=48.80 E-value=9.3 Score=37.09 Aligned_cols=21 Identities=19% Similarity=0.219 Sum_probs=17.1
Q ss_pred CceEEEccCCChHHHHHHHHH
Q 045263 533 MNRLLQGDVGCGKTVVAFLAC 553 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~ai 553 (742)
+.+.|.|++|||||.++-...
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~ 26 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMA 26 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 468899999999998775443
No 448
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=48.80 E-value=12 Score=40.86 Aligned_cols=47 Identities=9% Similarity=0.128 Sum_probs=0.0
Q ss_pred HHHHHHH-HhcCCCCCCceEEEccCCChHHHHHHHHHHHHHh------cCCeEEEE
Q 045263 518 SAISEII-WDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIG------SGYQAAFM 566 (742)
Q Consensus 518 ~aI~~I~-~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~------~g~qvlil 566 (742)
..++.++ .++..+. .+.|.|+.|||||..+...++.... .+..++++
T Consensus 165 ~~LD~lLgGGI~~Ge--i~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyi 218 (400)
T 3lda_A 165 KNLDTLLGGGVETGS--ITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYI 218 (400)
T ss_dssp HHHHHHTTTSEETTS--EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEE
T ss_pred hhHHHHhcCCcCCCc--EEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEE
No 449
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=48.72 E-value=7.4 Score=37.35 Aligned_cols=21 Identities=19% Similarity=0.108 Sum_probs=16.4
Q ss_pred ceEEEccCCChHHHHHHHHHH
Q 045263 534 NRLLQGDVGCGKTVVAFLACM 554 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val~ail 554 (742)
-+.+.|+.|||||..+-..+-
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 468999999999987655443
No 450
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=48.58 E-value=16 Score=41.03 Aligned_cols=46 Identities=20% Similarity=0.151 Sum_probs=31.9
Q ss_pred ceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEcccHHHHHHHHHHH
Q 045263 534 NRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMVPTELLATQHYEHL 580 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val~ail~~l~~g~qvlilaPT~~La~Q~~~~l 580 (742)
.++|.|++|||||..+...+......|.+++++++... ..|+...+
T Consensus 283 i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~-~~~l~~~~ 328 (525)
T 1tf7_A 283 IILATGATGTGKTLLVSRFVENACANKERAILFAYEES-RAQLLRNA 328 (525)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSC-HHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHH
Confidence 67899999999998876665555556777888876543 23444443
No 451
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=48.56 E-value=8.8 Score=40.76 Aligned_cols=39 Identities=18% Similarity=0.127 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHH----HHhcCCCCCCceEEEccCCChHHHHHH
Q 045263 512 LTSSQLSAISEI----IWDLKQPVPMNRLLQGDVGCGKTVVAF 550 (742)
Q Consensus 512 Lt~~Q~~aI~~I----~~~~~~~~~~~~LL~a~TGSGKT~val 550 (742)
+...|.++++.+ .++.-.+....++..|.||||||.+..
T Consensus 54 ~~~sQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 96 (325)
T 1bg2_A 54 SSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTME 96 (325)
T ss_dssp TTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred CCCCHHHHHHHHhhhhHHHHhCCCeEEEEEECCCCCCCceEec
Confidence 555677766554 233334444568999999999998864
No 452
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=48.55 E-value=9.9 Score=36.51 Aligned_cols=22 Identities=27% Similarity=0.357 Sum_probs=17.2
Q ss_pred CCceEEEccCCChHHHHHHHHH
Q 045263 532 PMNRLLQGDVGCGKTVVAFLAC 553 (742)
Q Consensus 532 ~~~~LL~a~TGSGKT~val~ai 553 (742)
+..+.|.|+.|||||.++-..+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~ 50 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVA 50 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3478999999999998765443
No 453
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=48.54 E-value=11 Score=36.64 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=16.4
Q ss_pred CceEEEccCCChHHHHHHHHH
Q 045263 533 MNRLLQGDVGCGKTVVAFLAC 553 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~ai 553 (742)
.-++|.||+|||||.++-..+
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~ 29 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVF 29 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred cEEEEECcCCCCHHHHHHHHH
Confidence 357899999999998765443
No 454
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=48.49 E-value=13 Score=35.26 Aligned_cols=30 Identities=27% Similarity=0.327 Sum_probs=24.8
Q ss_pred EccCCChHHHHHHHHHHHHHhcCCeEEEEc
Q 045263 538 QGDVGCGKTVVAFLACMEVIGSGYQAAFMV 567 (742)
Q Consensus 538 ~a~TGSGKT~val~ail~~l~~g~qvlila 567 (742)
.+.-|+|||.++...+......|++++++=
T Consensus 8 s~kgG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 8 NPKGGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp CSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eCCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 356789999999888887778899998884
No 455
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=48.48 E-value=10 Score=36.56 Aligned_cols=22 Identities=18% Similarity=0.116 Sum_probs=17.4
Q ss_pred CCceEEEccCCChHHHHHHHHH
Q 045263 532 PMNRLLQGDVGCGKTVVAFLAC 553 (742)
Q Consensus 532 ~~~~LL~a~TGSGKT~val~ai 553 (742)
++.++|.|++|||||.++-..+
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~ 33 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVL 33 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 3578999999999998765443
No 456
>2w9m_A Polymerase X; SAXS, DNA repair, DNA polymerase, DNA replication; 2.46A {Deinococcus radiodurans}
Probab=48.42 E-value=8.3 Score=44.16 Aligned_cols=33 Identities=21% Similarity=0.109 Sum_probs=27.8
Q ss_pred hhccCCcCCCCCHHHHHHHHhCCCCCHhHHhhc
Q 045263 207 LDKCISCVPGLSKRLYHQLENCGFYTLRKLLHH 239 (742)
Q Consensus 207 L~~~I~~LkGVG~k~~~~L~klGI~Tv~DLL~~ 239 (742)
.+..+..++|||||++..+-+.||.|++||...
T Consensus 95 ~~~~L~~v~GVGpk~A~~i~~~G~~s~edL~~a 127 (578)
T 2w9m_A 95 GLLDLLGVRGLGPKKIRSLWLAGIDSLERLREA 127 (578)
T ss_dssp HHHHHTTSTTCCHHHHHHHHHTTCCSHHHHHHH
T ss_pred HHHHHhCCCCcCHHHHHHHHHcCCCCHHHHHHH
Confidence 344678899999999999866699999999875
No 457
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=48.36 E-value=6.7 Score=36.64 Aligned_cols=22 Identities=27% Similarity=0.259 Sum_probs=13.8
Q ss_pred CCceEEEccCCChHHHHHHHHH
Q 045263 532 PMNRLLQGDVGCGKTVVAFLAC 553 (742)
Q Consensus 532 ~~~~LL~a~TGSGKT~val~ai 553 (742)
++.++|.|+.|||||.++-...
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CCEEEEECCC----CHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4678999999999998875543
No 458
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=48.33 E-value=15 Score=36.31 Aligned_cols=31 Identities=19% Similarity=0.299 Sum_probs=25.6
Q ss_pred EEEccCCChHHHHHHHHHHHHHhcCCeEEEE
Q 045263 536 LLQGDVGCGKTVVAFLACMEVIGSGYQAAFM 566 (742)
Q Consensus 536 LL~a~TGSGKT~val~ail~~l~~g~qvlil 566 (742)
+..+..|+|||.+++..+......|++++++
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~~Vlli 37 (260)
T 3q9l_A 7 VTSGKGGVGKTTSSAAIATGLAQKGKKTVVI 37 (260)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EECCCCCCcHHHHHHHHHHHHHhCCCcEEEE
Confidence 4456788999999988887777889999986
No 459
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=48.26 E-value=10 Score=40.71 Aligned_cols=40 Identities=18% Similarity=0.162 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHHH---HhcCCCCCCceEEEccCCChHHHHHH
Q 045263 511 SLTSSQLSAISEII---WDLKQPVPMNRLLQGDVGCGKTVVAF 550 (742)
Q Consensus 511 ~Lt~~Q~~aI~~I~---~~~~~~~~~~~LL~a~TGSGKT~val 550 (742)
.+...|.++++++. ...-.+....++..|.||||||.+..
T Consensus 62 ~~~~~Q~~vf~~v~~lv~~~l~G~n~tifAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 62 EPSHTNKEIFEEIRQLVQSSLDGYNVCIFAYGQTGSGKTYTML 104 (349)
T ss_dssp CTTCCHHHHHHHHHHHHHGGGTTCEEEEEEECSTTSSHHHHHH
T ss_pred CCCccHHHHHHHHHHHHHHHHCCcceeEEEeCCCCCCCceEeC
Confidence 34555666665542 33334444567899999999998874
No 460
>3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A*
Probab=48.24 E-value=41 Score=36.73 Aligned_cols=71 Identities=15% Similarity=0.235 Sum_probs=42.1
Q ss_pred cccCCCCCeEEEEEEEEEeeccccCCCceEEEEEEeeeeccCCCCCCcceeeecCCCceeEEEEEeeeeecccccccchh
Q 045263 251 QIDLDDGQYFIFIGEIISSRGMKAGCSFSFLEVIVGCEIADTETTSGDEVVNIDSGQKKKIYLHLKKFFRGTRFTSIPFL 330 (742)
Q Consensus 251 i~~l~~Ge~vti~G~V~~~~~~~~~~~~~~l~v~v~~~~~~~~~~~~~~~~~~~~g~~~~i~l~~~~ff~~~~Ffn~pfl 330 (742)
+.++++...+.+.|+|.+......+++ .+++ + .|+.+ .+.+ ..|+ ...-+
T Consensus 278 i~~~~~~~~~~v~G~V~~~P~~~~GGH-V~f~--l----------------~d~~~-----~i~c-~aye-----ptk~f 327 (402)
T 3au7_A 278 VHRLENYRSYRLRGRVTLEPYDIEGGH-VFFE--I----------------DTKFG-----SVKC-AAFE-----PTKQF 327 (402)
T ss_dssp CSSCCTTCEEEEEEEEEEEEEEETTTE-EEEE--E----------------EETTE-----EEEE-EECG-----GGTTH
T ss_pred ccccccCceEEEEEEEecCcEeccCce-EEEE--E----------------EcCCC-----EEEE-EEEc-----cchHH
Confidence 477889999999999998722221221 1111 1 12111 2333 2333 22223
Q ss_pred HhhhccccCCcEEEEEEEEee
Q 045263 331 KSIEGKHKVGEFVCVSGKVRA 351 (742)
Q Consensus 331 ~~~~~~l~~G~~v~v~GKv~~ 351 (742)
+.+.+.|.+||.|.++|.++.
T Consensus 328 r~~vr~L~~GD~V~v~G~v~~ 348 (402)
T 3au7_A 328 RNVIRLLRKGDVVEVYGSMKK 348 (402)
T ss_dssp HHHHTTCCTTCEEEEEEEEET
T ss_pred HHHHhcCCCCCEEEEEEeecC
Confidence 446688999999999999875
No 461
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=48.19 E-value=18 Score=38.57 Aligned_cols=16 Identities=31% Similarity=0.588 Sum_probs=14.2
Q ss_pred ceEEEccCCChHHHHH
Q 045263 534 NRLLQGDVGCGKTVVA 549 (742)
Q Consensus 534 ~~LL~a~TGSGKT~va 549 (742)
.++|.|+||||||...
T Consensus 177 ~i~ivG~sGsGKSTll 192 (361)
T 2gza_A 177 VIVVAGETGSGKTTLM 192 (361)
T ss_dssp CEEEEESSSSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 8899999999999754
No 462
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=48.16 E-value=9.3 Score=41.63 Aligned_cols=39 Identities=23% Similarity=0.210 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHH----HHhcCCCCCCceEEEccCCChHHHHHH
Q 045263 512 LTSSQLSAISEI----IWDLKQPVPMNRLLQGDVGCGKTVVAF 550 (742)
Q Consensus 512 Lt~~Q~~aI~~I----~~~~~~~~~~~~LL~a~TGSGKT~val 550 (742)
....|.++++.+ ....-.+....++..|.||||||.+..
T Consensus 75 ~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM~ 117 (388)
T 3bfn_A 75 ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTML 117 (388)
T ss_dssp TTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHHT
T ss_pred CCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEee
Confidence 455676666653 233334554567899999999998763
No 463
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=48.10 E-value=6.4 Score=46.96 Aligned_cols=36 Identities=28% Similarity=0.282 Sum_probs=24.0
Q ss_pred CCCCCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEc
Q 045263 529 QPVPMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMV 567 (742)
Q Consensus 529 ~~~~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlila 567 (742)
...|..+||+||+|+|||.++-..+- +.|...+.+-
T Consensus 235 ~~~p~GILL~GPPGTGKT~LAraiA~---elg~~~~~v~ 270 (806)
T 3cf2_A 235 VKPPRGILLYGPPGTGKTLIARAVAN---ETGAFFFLIN 270 (806)
T ss_dssp CCCCCEEEEECCTTSCHHHHHHHHHT---TTTCEEEEEE
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHH---HhCCeEEEEE
Confidence 34466899999999999987754332 2255554443
No 464
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=47.97 E-value=30 Score=33.26 Aligned_cols=19 Identities=26% Similarity=0.324 Sum_probs=15.2
Q ss_pred CCceEEEccCCChHHHHHH
Q 045263 532 PMNRLLQGDVGCGKTVVAF 550 (742)
Q Consensus 532 ~~~~LL~a~TGSGKT~val 550 (742)
+..+.|.|++|||||..+-
T Consensus 22 g~~v~I~G~sGsGKSTl~~ 40 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSN 40 (208)
T ss_dssp CEEEEEECCTTSCTHHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 3467899999999997653
No 465
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A
Probab=47.82 E-value=76 Score=27.50 Aligned_cols=77 Identities=10% Similarity=0.121 Sum_probs=43.0
Q ss_pred eEEEEEEEEEeeccc-cCCCceEEEEEEeeeeccCCCCCCcceeeecCCCceeEEEEEeeeeecccccccchhHhhhccc
Q 045263 259 YFIFIGEIISSRGMK-AGCSFSFLEVIVGCEIADTETTSGDEVVNIDSGQKKKIYLHLKKFFRGTRFTSIPFLKSIEGKH 337 (742)
Q Consensus 259 ~vti~G~V~~~~~~~-~~~~~~~l~v~v~~~~~~~~~~~~~~~~~~~~g~~~~i~l~~~~ff~~~~Ffn~pfl~~~~~~l 337 (742)
.|++.|++..-...+ ...+..+.++.+..... ..+++-...++ .|++.+.|-.. ...+.+.+
T Consensus 4 ~v~L~G~l~~dpelR~t~~G~~v~~f~lA~~~~-----------~~~~~~~r~~~----~~~~vv~~g~~--Ae~~~~~l 66 (104)
T 1txy_A 4 RLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSV-----------QEEAGFHRQAW----CQMPVIVSGHE--NQAITHSI 66 (104)
T ss_dssp EEEEEEEEEEEEEEEECTTSCEEEEEEEEEEEE-----------EEETTEEEEEE----EEEEEEEESST--THHHHTTC
T ss_pred EEEEEEEECCCceEEECCCCCEEEEEEEEEeCc-----------cccCCceecee----EEEEEEEEhHH--HHHHHhhC
Confidence 588999998765444 34566777777764210 01112111121 12333344221 12234679
Q ss_pred cCCcEEEEEEEEeec
Q 045263 338 KVGEFVCVSGKVRAM 352 (742)
Q Consensus 338 ~~G~~v~v~GKv~~~ 352 (742)
++|+.+.|.|++...
T Consensus 67 ~KG~~V~V~G~L~~~ 81 (104)
T 1txy_A 67 TVGSRITVQGFISCH 81 (104)
T ss_dssp CTTCEEEEEEEEEC-
T ss_pred CCCCEEEEEEEEEec
Confidence 999999999999864
No 466
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=47.69 E-value=10 Score=40.66 Aligned_cols=39 Identities=15% Similarity=0.191 Sum_probs=25.6
Q ss_pred CCHHHHHHHHHHH---HhcCCCCCCceEEEccCCChHHHHHH
Q 045263 512 LTSSQLSAISEII---WDLKQPVPMNRLLQGDVGCGKTVVAF 550 (742)
Q Consensus 512 Lt~~Q~~aI~~I~---~~~~~~~~~~~LL~a~TGSGKT~val 550 (742)
+...|.++++++. ...-.+....++..|.||||||.+..
T Consensus 62 ~~~~Q~~Vy~~v~~lv~~~l~G~n~tifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 62 QQDTNVDVFKEVGQLVQSSLDGYNVCIFAYGQTGSGKTFTML 103 (347)
T ss_dssp TTCCHHHHHHHHHHHHGGGGGTCCEEEEEECCTTSSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHhcCCceeEEEEECCCCCCCcEecc
Confidence 4555666665542 22223444567899999999998864
No 467
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=47.34 E-value=10 Score=40.54 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=17.1
Q ss_pred ceEEEccCCChHHHHHHHHHH
Q 045263 534 NRLLQGDVGCGKTVVAFLACM 554 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val~ail 554 (742)
.++|.||||||||.++...+.
T Consensus 9 lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEECCCcCcHHHHHHHHHH
Confidence 478999999999998765544
No 468
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=47.19 E-value=18 Score=36.50 Aligned_cols=32 Identities=22% Similarity=0.273 Sum_probs=25.6
Q ss_pred EEccCCChHHHHHHHHHHHHHhcCCeEEEEcc
Q 045263 537 LQGDVGCGKTVVAFLACMEVIGSGYQAAFMVP 568 (742)
Q Consensus 537 L~a~TGSGKT~val~ail~~l~~g~qvlilaP 568 (742)
.-.+||+|||.+.+..+......|.++.++=|
T Consensus 27 tgT~t~vGKT~vs~gL~~~L~~~G~~V~~fKP 58 (242)
T 3qxc_A 27 SATNTNAGKTTCARLLAQYCNACGVKTILLKP 58 (242)
T ss_dssp EESSTTSSHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred EeCCCCCcHHHHHHHHHHHHHhCCCceEEEee
Confidence 33468999999988888777788999988854
No 469
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=47.11 E-value=10 Score=36.01 Aligned_cols=36 Identities=14% Similarity=0.186 Sum_probs=23.7
Q ss_pred CCceEEEccCCChHHHHHHHHHHHHHhcCCeEEEE-ccc
Q 045263 532 PMNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFM-VPT 569 (742)
Q Consensus 532 ~~~~LL~a~TGSGKT~val~ail~~l~~g~qvlil-aPT 569 (742)
++.++|.|+.|||||.++-...-.. .|..++.+ .|+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l--~g~~~~~~~~~~ 40 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI--PANTIKYLNFPQ 40 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS--CGGGEEEEESSC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH--CCCceEEEecCC
Confidence 4678999999999998875544322 34544443 344
No 470
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=47.00 E-value=10 Score=35.65 Aligned_cols=20 Identities=35% Similarity=0.391 Sum_probs=16.0
Q ss_pred CceEEEccCCChHHHHHHHH
Q 045263 533 MNRLLQGDVGCGKTVVAFLA 552 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~a 552 (742)
..++|.|+.|||||.++-..
T Consensus 10 ~~i~l~G~~GsGKSTl~~~L 29 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEAL 29 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHH
Confidence 46789999999999875443
No 471
>3im1_A Protein SNU246, PRE-mRNA-splicing helicase BRR2; ATPase, RNA helicase, rnpase, RNA unwindase, molecular model mRNA splicing; 1.65A {Saccharomyces cerevisiae} PDB: 3im2_A* 3hib_A
Probab=46.79 E-value=11 Score=39.69 Aligned_cols=31 Identities=10% Similarity=0.304 Sum_probs=28.4
Q ss_pred hccCCcCCCCCHHHHHHHHhCCCCCHhHHhh
Q 045263 208 DKCISCVPGLSKRLYHQLENCGFYTLRKLLH 238 (742)
Q Consensus 208 ~~~I~~LkGVG~k~~~~L~klGI~Tv~DLL~ 238 (742)
+.|+..|||||+..+++|.+.||.|+.||..
T Consensus 156 ~~pL~Qlp~i~~~~~~~l~~~~i~s~~~l~~ 186 (328)
T 3im1_A 156 DNPLRQIPHFNNKILEKCKEINVETVYDIMA 186 (328)
T ss_dssp SCGGGGSTTCCHHHHHHHHHTTCCSHHHHHH
T ss_pred CCceeCCCCCCHHHHHHHHhCCCCCHHHHhc
Confidence 4689999999999999999999999999864
No 472
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=46.79 E-value=12 Score=34.50 Aligned_cols=22 Identities=27% Similarity=0.320 Sum_probs=17.9
Q ss_pred CceEEEccCCChHHHHHHHHHH
Q 045263 533 MNRLLQGDVGCGKTVVAFLACM 554 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~ail 554 (742)
.+++|.|..|||||.++-....
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 3789999999999998765543
No 473
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=46.50 E-value=8.7 Score=41.36 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=26.9
Q ss_pred CCCHHHHHHHHHHHH----hcCCCCCCceEEEccCCChHHHHHH
Q 045263 511 SLTSSQLSAISEIIW----DLKQPVPMNRLLQGDVGCGKTVVAF 550 (742)
Q Consensus 511 ~Lt~~Q~~aI~~I~~----~~~~~~~~~~LL~a~TGSGKT~val 550 (742)
.+...|.++++.+.. ..-.+....++..|.||||||.+..
T Consensus 64 ~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~ 107 (359)
T 1x88_A 64 GASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTME 107 (359)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSSHHHHHT
T ss_pred eccCchhHHHHHHHHHhHHHHhCCCceEEEEeCCCCCCCceEEe
Confidence 356667777665432 2223444567899999999998764
No 474
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=46.47 E-value=10 Score=36.48 Aligned_cols=19 Identities=26% Similarity=0.268 Sum_probs=15.3
Q ss_pred CceEEEccCCChHHHHHHH
Q 045263 533 MNRLLQGDVGCGKTVVAFL 551 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~ 551 (742)
..+.|.|++|||||.++-.
T Consensus 7 ~~i~i~G~~GsGKSTl~~~ 25 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQA 25 (211)
T ss_dssp EEEEEEESTTSSHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH
Confidence 4578999999999987543
No 475
>1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima}
Probab=46.42 E-value=41 Score=31.63 Aligned_cols=77 Identities=16% Similarity=0.251 Sum_probs=41.6
Q ss_pred CeEEEEEEEEEeeccc-cCCCceEEEEEEeeee-ccCCCCCCcceeeecCCCce-eEEEEEeeeeecccccccchhHhhh
Q 045263 258 QYFIFIGEIISSRGMK-AGCSFSFLEVIVGCEI-ADTETTSGDEVVNIDSGQKK-KIYLHLKKFFRGTRFTSIPFLKSIE 334 (742)
Q Consensus 258 e~vti~G~V~~~~~~~-~~~~~~~l~v~v~~~~-~~~~~~~~~~~~~~~~g~~~-~i~l~~~~ff~~~~Ffn~pfl~~~~ 334 (742)
..|++.|+|.+-...+ ...+..+.++.|.+.. ... +.+|... + .|++.+.|... ...+.
T Consensus 17 N~V~LiGrL~~DPelr~t~~G~~va~f~lAv~~r~~~----------~~~Ge~~~t------~~~~v~~wg~~--Ae~~~ 78 (153)
T 1z9f_A 17 NKIILIGRLVRDPEERYTLSGTPVTTFTIAVDRVPRK----------NAPDDAQTT------DFFRIVTFGRL--AEFAR 78 (153)
T ss_dssp CCEEEEEEESSCCEEEECC--CEEEEEEEEEEC---------------------CE------EEEEEEEEHHH--HHHHH
T ss_pred eEEEEEEEECCCCEEEECCCCCEEEEEEEEEcCCccc----------cCCCCEeee------EEEEEEEECHH--HHHHH
Confidence 4589999998653333 3445667777766422 111 1122211 2 34554445321 22345
Q ss_pred ccccCCcEEEEEEEEeec
Q 045263 335 GKHKVGEFVCVSGKVRAM 352 (742)
Q Consensus 335 ~~l~~G~~v~v~GKv~~~ 352 (742)
+.+++|+.|+|.|++...
T Consensus 79 ~~l~KG~~V~VeGrL~~~ 96 (153)
T 1z9f_A 79 TYLTKGRLVLVEGEMRMR 96 (153)
T ss_dssp HHCCTTCEEEEEEEEEEE
T ss_pred hhCCCCCEEEEEEEEEec
Confidence 679999999999999763
No 476
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=46.40 E-value=9.9 Score=40.82 Aligned_cols=38 Identities=21% Similarity=0.176 Sum_probs=25.0
Q ss_pred CCHHHHHHHHHH----HHhcCCCCCCceEEEccCCChHHHHH
Q 045263 512 LTSSQLSAISEI----IWDLKQPVPMNRLLQGDVGCGKTVVA 549 (742)
Q Consensus 512 Lt~~Q~~aI~~I----~~~~~~~~~~~~LL~a~TGSGKT~va 549 (742)
....|.++++++ ....-.+....++..|.||||||.+.
T Consensus 66 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm 107 (350)
T 2vvg_A 66 QTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTM 107 (350)
T ss_dssp TTCCHHHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEEe
Confidence 455666665542 23323344457799999999999876
No 477
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=46.37 E-value=25 Score=41.20 Aligned_cols=21 Identities=33% Similarity=0.420 Sum_probs=17.3
Q ss_pred ceEEEccCCChHHHHHHHHHH
Q 045263 534 NRLLQGDVGCGKTVVAFLACM 554 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val~ail 554 (742)
++++.||+|+|||.++-..+.
T Consensus 490 ~~ll~G~~GtGKT~la~~la~ 510 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSK 510 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHH
Confidence 689999999999988754443
No 478
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=45.88 E-value=10 Score=40.97 Aligned_cols=40 Identities=20% Similarity=0.072 Sum_probs=26.5
Q ss_pred CCCHHHHHHHHHHH----HhcCCCCCCceEEEccCCChHHHHHH
Q 045263 511 SLTSSQLSAISEII----WDLKQPVPMNRLLQGDVGCGKTVVAF 550 (742)
Q Consensus 511 ~Lt~~Q~~aI~~I~----~~~~~~~~~~~LL~a~TGSGKT~val 550 (742)
.+...|.++++++. .+.-.+....++..|.||||||.+..
T Consensus 60 ~~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 103 (365)
T 2y65_A 60 KPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTME 103 (365)
T ss_dssp CTTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred cCCCCHHHHHHHhhhhHHHHHhCCCceEEEeecCCCCCCceEEe
Confidence 35566766665542 23334444567999999999998863
No 479
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=45.82 E-value=7.9 Score=41.76 Aligned_cols=40 Identities=18% Similarity=0.193 Sum_probs=25.5
Q ss_pred CCCHHHHHHHHHHH----H-hcCCCCCCceEEEccCCChHHHHHH
Q 045263 511 SLTSSQLSAISEII----W-DLKQPVPMNRLLQGDVGCGKTVVAF 550 (742)
Q Consensus 511 ~Lt~~Q~~aI~~I~----~-~~~~~~~~~~LL~a~TGSGKT~val 550 (742)
.....|.++++.+. . .+..+....++..|.||||||.+..
T Consensus 59 ~~~~~Q~~Vy~~~~~plv~~~~~~G~n~tifAYGqTGSGKTyTM~ 103 (360)
T 1ry6_A 59 DDTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTML 103 (360)
T ss_dssp CTTCCHHHHHHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHHHH
T ss_pred cCCCCHHHHHHHHhhhhhhhhccCCceeEEEeeCCCCCCCCEEEe
Confidence 35667777776532 1 1222332346899999999998764
No 480
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=45.73 E-value=21 Score=40.62 Aligned_cols=33 Identities=24% Similarity=0.388 Sum_probs=28.7
Q ss_pred ceEEEccCCChHHHHHHHHHHHHHhcCCeEEEE
Q 045263 534 NRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFM 566 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val~ail~~l~~g~qvlil 566 (742)
..+..+..|.|||.++...+......|.+++++
T Consensus 329 ~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllv 361 (589)
T 1ihu_A 329 LIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLT 361 (589)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEecCCCCChhhHHHHHHHHHHHCCCcEEEE
Confidence 467789999999999988888888889999886
No 481
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=45.67 E-value=20 Score=37.13 Aligned_cols=22 Identities=23% Similarity=0.478 Sum_probs=17.0
Q ss_pred CCCCceEEEccCCChHHHHHHH
Q 045263 530 PVPMNRLLQGDVGCGKTVVAFL 551 (742)
Q Consensus 530 ~~~~~~LL~a~TGSGKT~val~ 551 (742)
..+.-+.|.|++|||||.++-.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~ 50 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQ 50 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHH
Confidence 3445678999999999987643
No 482
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=45.59 E-value=12 Score=40.14 Aligned_cols=39 Identities=23% Similarity=0.239 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHH----HHhcCCCCCCceEEEccCCChHHHHHH
Q 045263 512 LTSSQLSAISEI----IWDLKQPVPMNRLLQGDVGCGKTVVAF 550 (742)
Q Consensus 512 Lt~~Q~~aI~~I----~~~~~~~~~~~~LL~a~TGSGKT~val 550 (742)
....|.++++.+ .+..-.+....++..|.||||||.+..
T Consensus 82 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~ 124 (355)
T 3lre_A 82 ETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTML 124 (355)
T ss_dssp TTCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHT
T ss_pred CCCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeec
Confidence 444566665443 333334555568999999999998863
No 483
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=45.49 E-value=17 Score=36.07 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=26.5
Q ss_pred ceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEc
Q 045263 534 NRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMV 567 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val~ail~~l~~g~qvlila 567 (742)
..++.|..|+|||..+...+.... .|.+++++-
T Consensus 16 i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd 48 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVN 48 (262)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEe
Confidence 568899999999988776666555 788888876
No 484
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=45.48 E-value=10 Score=41.03 Aligned_cols=39 Identities=21% Similarity=0.171 Sum_probs=25.1
Q ss_pred CCHHHHHHHHHH----HHhcCCCCCCceEEEccCCChHHHHHH
Q 045263 512 LTSSQLSAISEI----IWDLKQPVPMNRLLQGDVGCGKTVVAF 550 (742)
Q Consensus 512 Lt~~Q~~aI~~I----~~~~~~~~~~~~LL~a~TGSGKT~val 550 (742)
+...|.++++++ ....-.+....++..|.||||||.+..
T Consensus 78 ~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~ 120 (372)
T 3b6u_A 78 WNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTME 120 (372)
T ss_dssp TTCCHHHHHHHTHHHHHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred CcCchHHHHHHHHHHHHHHHhCCCeeeEEeecCCCCCCCEeEe
Confidence 455666665543 222223444567899999999998763
No 485
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=45.39 E-value=11 Score=40.55 Aligned_cols=39 Identities=21% Similarity=0.112 Sum_probs=26.3
Q ss_pred CCHHHHHHHHHH----HHhcCCCCCCceEEEccCCChHHHHHH
Q 045263 512 LTSSQLSAISEI----IWDLKQPVPMNRLLQGDVGCGKTVVAF 550 (742)
Q Consensus 512 Lt~~Q~~aI~~I----~~~~~~~~~~~~LL~a~TGSGKT~val 550 (742)
....|.++++.+ .+..-.+....++..|.||||||.+..
T Consensus 54 ~~~tQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~ 96 (349)
T 1t5c_A 54 GNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMM 96 (349)
T ss_dssp TTSCHHHHHHHTTHHHHHHHHTTCCEEEEEEESTTSSHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCccceeeecCCCCCCCeEEe
Confidence 555677766553 233334444567999999999998863
No 486
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=45.38 E-value=18 Score=34.72 Aligned_cols=34 Identities=21% Similarity=0.343 Sum_probs=21.9
Q ss_pred CceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEc
Q 045263 533 MNRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMV 567 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~ail~~l~~g~qvlila 567 (742)
..+++.|.+|+|||......+... ....++.++.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~-~~~~~~~~i~ 64 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI-GNEVKIGAML 64 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH-TTTSCEEEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh-ccCCeEEEEe
Confidence 478999999999997654444332 2334555543
No 487
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=45.36 E-value=11 Score=41.29 Aligned_cols=40 Identities=15% Similarity=0.203 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHHHH---HhcCCCCCCceEEEccCCChHHHHHH
Q 045263 511 SLTSSQLSAISEII---WDLKQPVPMNRLLQGDVGCGKTVVAF 550 (742)
Q Consensus 511 ~Lt~~Q~~aI~~I~---~~~~~~~~~~~LL~a~TGSGKT~val 550 (742)
.+...|.++++++. ...-.+....++..|.||||||.+..
T Consensus 117 ~~~~~Q~~Vf~~v~~lv~~~l~G~N~tifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 117 DQQDTNVDVFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTML 159 (403)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHTTCCEEEEEESCTTSSHHHHHH
T ss_pred CCCCchHHHHHHHHHHHHHHhCCcceEEEEECCCCCCCceEeC
Confidence 46667777776643 22223444567899999999999874
No 488
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=45.30 E-value=19 Score=37.02 Aligned_cols=33 Identities=15% Similarity=0.044 Sum_probs=27.2
Q ss_pred ceEEEccCCChHHHHHHHHHHHHHhcCCeEEEE
Q 045263 534 NRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFM 566 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val~ail~~l~~g~qvlil 566 (742)
.+.+.+.-|+|||.+++..+......|++|+++
T Consensus 43 vI~v~~KGGvGKTT~a~nLA~~La~~G~~Vlli 75 (307)
T 3end_A 43 VFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQI 75 (307)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCccHHHHHHHHHHHHHHCCCeEEEE
Confidence 345558899999999988887777889999887
No 489
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=45.22 E-value=9.8 Score=41.75 Aligned_cols=41 Identities=17% Similarity=0.020 Sum_probs=26.9
Q ss_pred CCCHHHHHHHHHH----HHhcCCCCCCceEEEccCCChHHHHHHH
Q 045263 511 SLTSSQLSAISEI----IWDLKQPVPMNRLLQGDVGCGKTVVAFL 551 (742)
Q Consensus 511 ~Lt~~Q~~aI~~I----~~~~~~~~~~~~LL~a~TGSGKT~val~ 551 (742)
.....|.++++.+ ....-.+....++..|.||||||.+..-
T Consensus 130 ~~~~tQ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM~G 174 (410)
T 1v8k_A 130 DETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGG 174 (410)
T ss_dssp CTTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHHC
T ss_pred ecCCChhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEeec
Confidence 3556677766543 2332334445678999999999988643
No 490
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=45.08 E-value=20 Score=36.42 Aligned_cols=31 Identities=16% Similarity=0.221 Sum_probs=25.7
Q ss_pred EEEccCCChHHHHHHHHHHHHHhcCCeEEEE
Q 045263 536 LLQGDVGCGKTVVAFLACMEVIGSGYQAAFM 566 (742)
Q Consensus 536 LL~a~TGSGKT~val~ail~~l~~g~qvlil 566 (742)
.+.+.-|+|||.++...+......|++|+++
T Consensus 6 avs~KGGvGKTT~a~nLA~~La~~G~rVlli 36 (289)
T 2afh_E 6 AIYGKGGIGKSTTTQNLVAALAEMGKKVMIV 36 (289)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEeCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 4467889999999988877777789999886
No 491
>1qvc_A Single stranded DNA binding protein monomer; beta-barrel; 2.20A {Escherichia coli} SCOP: b.40.4.3 PDB: 1kaw_A 1eyg_A 1sru_A
Probab=45.02 E-value=56 Score=30.23 Aligned_cols=76 Identities=12% Similarity=0.213 Sum_probs=42.7
Q ss_pred eEEEEEEEEEeeccc-cCCCceEEEEEEeeeeccCCCCCCcceeeecCCCc--eeEEEEEeeeeecccccccchhHhhhc
Q 045263 259 YFIFIGEIISSRGMK-AGCSFSFLEVIVGCEIADTETTSGDEVVNIDSGQK--KKIYLHLKKFFRGTRFTSIPFLKSIEG 335 (742)
Q Consensus 259 ~vti~G~V~~~~~~~-~~~~~~~l~v~v~~~~~~~~~~~~~~~~~~~~g~~--~~i~l~~~~ff~~~~Ffn~pfl~~~~~ 335 (742)
.|++.|+|..-...+ ...+..+.++.|.+.....+ .++|.. .+ .||..+.|-. -...+.+
T Consensus 7 ~v~L~GrL~~dPelr~t~~G~~v~~f~lA~~~~~~~---------~~~Ge~~~~t------~~~~v~~wg~--~Ae~~~~ 69 (145)
T 1qvc_A 7 KVILVGNLGQDPEVRYMPNGGAVANITLATSESWRD---------KATGEMKEQT------EWHRVVLFGK--LAEVASE 69 (145)
T ss_dssp EEEEEEEESSCCEEECCSSSCCEEEEEEEECCCCSC---------CSSSSCCCCC------EEEEEEEETH--HHHHHHH
T ss_pred EEEEEEEeCCCCEEEECCCCCEEEEEEEEEcCCccc---------ccCCcEeccc------EEEEEEEehH--HHHHHHH
Confidence 588999998654333 34456677777764221110 011211 12 3444344422 1222446
Q ss_pred cccCCcEEEEEEEEee
Q 045263 336 KHKVGEFVCVSGKVRA 351 (742)
Q Consensus 336 ~l~~G~~v~v~GKv~~ 351 (742)
.|++|+.|.|.|++..
T Consensus 70 ~l~KG~~V~V~G~L~~ 85 (145)
T 1qvc_A 70 YLRKGSQVYIEGQLRT 85 (145)
T ss_dssp HCCTTCEEEEEEEEEE
T ss_pred hcCCCCEEEEEEEEEe
Confidence 7999999999999975
No 492
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=44.97 E-value=11 Score=35.96 Aligned_cols=19 Identities=42% Similarity=0.746 Sum_probs=15.7
Q ss_pred ceEEEccCCChHHHHHHHH
Q 045263 534 NRLLQGDVGCGKTVVAFLA 552 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val~a 552 (742)
.+.|.|+.|||||.++-..
T Consensus 3 ~i~i~G~~GsGKSTl~~~L 21 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMF 21 (204)
T ss_dssp EEEEEECTTSSHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHH
Confidence 5789999999999876444
No 493
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=44.88 E-value=21 Score=38.35 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=18.5
Q ss_pred cCCCCCCceEEEccCCChHHHHHH
Q 045263 527 LKQPVPMNRLLQGDVGCGKTVVAF 550 (742)
Q Consensus 527 ~~~~~~~~~LL~a~TGSGKT~val 550 (742)
+..+...+++|.|+.|+|||.++-
T Consensus 19 i~~g~~~~i~l~G~~G~GKTTl~~ 42 (359)
T 2ga8_A 19 IEDNYRVCVILVGSPGSGKSTIAE 42 (359)
T ss_dssp TTTCSCEEEEEECCTTSSHHHHHH
T ss_pred hccCCeeEEEEECCCCCcHHHHHH
Confidence 334444578999999999998874
No 494
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=44.86 E-value=13 Score=34.49 Aligned_cols=20 Identities=35% Similarity=0.335 Sum_probs=16.3
Q ss_pred CceEEEccCCChHHHHHHHH
Q 045263 533 MNRLLQGDVGCGKTVVAFLA 552 (742)
Q Consensus 533 ~~~LL~a~TGSGKT~val~a 552 (742)
+.++|.|+.|||||.++-..
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l 28 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEV 28 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHH
Confidence 46789999999999876544
No 495
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=44.77 E-value=11 Score=35.74 Aligned_cols=19 Identities=21% Similarity=0.232 Sum_probs=15.4
Q ss_pred ceEEEccCCChHHHHHHHH
Q 045263 534 NRLLQGDVGCGKTVVAFLA 552 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val~a 552 (742)
-+.|.||+|||||.++-..
T Consensus 9 ii~l~Gp~GsGKSTl~~~L 27 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRAL 27 (205)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHH
Confidence 5789999999999875443
No 496
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=44.68 E-value=16 Score=38.68 Aligned_cols=34 Identities=15% Similarity=0.200 Sum_probs=28.8
Q ss_pred ceEEEccCCChHHHHHHHHHHHHHhcCCeEEEEc
Q 045263 534 NRLLQGDVGCGKTVVAFLACMEVIGSGYQAAFMV 567 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val~ail~~l~~g~qvlila 567 (742)
-.++.|.-|.|||.++...+......|++++++-
T Consensus 18 i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid 51 (334)
T 3iqw_A 18 WIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLS 51 (334)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEE
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEE
Confidence 4577889999999999888887778899998885
No 497
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=44.48 E-value=16 Score=35.84 Aligned_cols=42 Identities=24% Similarity=0.216 Sum_probs=26.7
Q ss_pred CHHHHHHHHHHHHhcCCCCCCceEEEccCCChHHHHHHHHHHHHHhcC
Q 045263 513 TSSQLSAISEIIWDLKQPVPMNRLLQGDVGCGKTVVAFLACMEVIGSG 560 (742)
Q Consensus 513 t~~Q~~aI~~I~~~~~~~~~~~~LL~a~TGSGKT~val~ail~~l~~g 560 (742)
+..|..+++.+..+ ..+.|.||.|||||...-..+-....+|
T Consensus 9 ~~g~~~~l~~i~~G------e~~~liG~nGsGKSTLl~~l~Gl~p~~G 50 (208)
T 3b85_A 9 TLGQKHYVDAIDTN------TIVFGLGPAGSGKTYLAMAKAVQALQSK 50 (208)
T ss_dssp SHHHHHHHHHHHHC------SEEEEECCTTSSTTHHHHHHHHHHHHTT
T ss_pred CHhHHHHHHhccCC------CEEEEECCCCCCHHHHHHHHhcCCCcCC
Confidence 44567777776442 2578999999999977533322233444
No 498
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=44.46 E-value=12 Score=40.92 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=17.4
Q ss_pred ceEEEccCCChHHHHHHHHHHH
Q 045263 534 NRLLQGDVGCGKTVVAFLACME 555 (742)
Q Consensus 534 ~~LL~a~TGSGKT~val~ail~ 555 (742)
.++|.||||||||.++...+..
T Consensus 4 ~i~i~GptgsGKttla~~La~~ 25 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQK 25 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHHHH
Confidence 4689999999999887665543
No 499
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=44.33 E-value=8.2 Score=41.08 Aligned_cols=21 Identities=24% Similarity=0.245 Sum_probs=16.5
Q ss_pred CCCCceEEEccCCChHHHHHH
Q 045263 530 PVPMNRLLQGDVGCGKTVVAF 550 (742)
Q Consensus 530 ~~~~~~LL~a~TGSGKT~val 550 (742)
+....++..|.||||||.+..
T Consensus 79 G~n~tifAYGqTGSGKTyTm~ 99 (330)
T 2h58_A 79 GFNVCIFAYGQTGAGKTYTME 99 (330)
T ss_dssp TCCEEEEEESSTTSSHHHHHT
T ss_pred CCEEEEEeECCCCCCCcEEEe
Confidence 334467899999999998764
No 500
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=44.23 E-value=19 Score=36.01 Aligned_cols=31 Identities=16% Similarity=0.163 Sum_probs=25.3
Q ss_pred EEEccCCChHHHHHHHHHHHHHhcCCeEEEE
Q 045263 536 LLQGDVGCGKTVVAFLACMEVIGSGYQAAFM 566 (742)
Q Consensus 536 LL~a~TGSGKT~val~ail~~l~~g~qvlil 566 (742)
.+.+.-|.|||.++...+......|++++++
T Consensus 5 ~vs~KGGvGKTT~a~nLA~~la~~G~~Vlli 35 (269)
T 1cp2_A 5 AIYGKGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EEecCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 3467889999999888777777789999885
Done!