BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045265
(345 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PA2|A Chain A, Arabidopsis Thaliana Peroxidase A2
pdb|1QO4|A Chain A, Arabidopsis Thaliana Peroxidase A2 At Room Temperature
Length = 306
Score = 209 bits (531), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 120/312 (38%), Positives = 174/312 (55%), Gaps = 14/312 (4%)
Query: 35 VKLEWHYYKVHNTCDDAEAYIRHQVELFYKHDKTIAPKLLRLLYSDCFVTGCDASILLDR 94
++L +Y TC +A A +R ++ + D I L+RL + DCFV GCDASILLD
Sbjct: 1 MQLNATFYS--GTCPNASAIVRSTIQQALQSDTRIGASLIRLHFHDCFVNGCDASILLDD 58
Query: 95 PNS---EKTAPQNWGLG-AFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSY 150
S EK A N F ++D IK LE CPG VSCSD+L LA+ +V +AG PS+
Sbjct: 59 TGSIQSEKNAGPNVNSARGFNVVDNIKTALENACPGVVSCSDVLALASEASVSLAGGPSW 118
Query: 151 PVFTGRRDGMTSTKESVD--LPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
V GRRD +T+ + +PSP S F + GL+ D+V L GAHT G+ RC
Sbjct: 119 TVLLGRRDSLTANLAGANSSIPSPIESLSNITFKFSAVGLNTNDLVALSGAHTFGRARCG 178
Query: 209 YIVDRLYNYKNTGKPDPSMNTTLLNRLRKECPPRTRKGQSDPLVYLNPETGXXXXXXXXX 268
+RL+N+ TG PDP++N+TLL+ L++ CP + G + + L+ T
Sbjct: 179 VFNNRLFNFSGTGNPDPTLNSTLLSTLQQLCP---QNGSASTITNLDLST--PDAFDNNY 233
Query: 269 XXXVKTHEAVLGVDQQL-SNGDNNTLQIVDEFAAGFEDFRKALALSMSRMGSINVLTGKQ 327
+++++ +L DQ+L S ++T+ IV FA+ F +A A SM MG+I+ LTG
Sbjct: 234 FANLQSNDGLLQSDQELFSTTGSSTIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSN 293
Query: 328 GEIRRNCRCTNA 339
GEIR +C+ N
Sbjct: 294 GEIRLDCKKVNG 305
>pdb|3ATJ|A Chain A, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|3ATJ|B Chain B, Heme Ligand Mutant Of Recombinant Horseradish Peroxidase
In Complex With Benzhydroxamic Acid
pdb|1GWT|A Chain A, Recombinant Horseradish Peroxidase C1a Phe221met
Length = 309
Score = 198 bits (503), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 115/316 (36%), Positives = 176/316 (55%), Gaps = 16/316 (5%)
Query: 35 VKLEWHYYKVHNTCDDAEAYIRHQVELFYKHDKTIAPKLLRLLYSDCFVTGCDASILLDR 94
++L +Y N+C + +R + + D IA +LRL + DCFV GCDASILLD
Sbjct: 1 MQLTPTFYD--NSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDN 58
Query: 95 PNSEKTAPQNWGLG----AFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSY 150
S +T +G F +ID++K +E CP VSC+D+L +A + +V +AG PS+
Sbjct: 59 TTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSW 118
Query: 151 PVFTGRRDGMTSTKE--SVDLPSPSISWKESLACFQSKGLD-VQDMVTLLGAHTMGQTRC 207
V GRRD + + + + +LP+P + + F++ GL+ D+V L G HT G+ +C
Sbjct: 119 RVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQC 178
Query: 208 RYIVDRLYNYKNTGKPDPSMNTTLLNRLRKECPPRTRKGQSDPLVYLNPETGXXXXXXXX 267
R+I+DRLYN+ NTG PDP++NTT L LR CP G LV ++ T
Sbjct: 179 RFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDMDLRT--PTIFDNK 233
Query: 268 XXXXVKTHEAVLGVDQQLSNGDN--NTLQIVDEFAAGFEDFRKALALSMSRMGSINVLTG 325
++ + ++ DQ+L + N +T+ +V FA + F A +M RMG+I LTG
Sbjct: 234 YYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTG 293
Query: 326 KQGEIRRNCRCTNADT 341
QG+IR NCR N+++
Sbjct: 294 TQGQIRLNCRVVNSNS 309
>pdb|4ATJ|A Chain A, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
pdb|4ATJ|B Chain B, Distal Heme Pocket Mutant (H42e) Of Recombinant
Horseradish Peroxidase In Complex With Benzhydroxamic
Acid
Length = 309
Score = 198 bits (503), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 115/316 (36%), Positives = 175/316 (55%), Gaps = 16/316 (5%)
Query: 35 VKLEWHYYKVHNTCDDAEAYIRHQVELFYKHDKTIAPKLLRLLYSDCFVTGCDASILLDR 94
++L +Y N+C + +R + + D IA +LRL + DCFV GCDASILLD
Sbjct: 1 MQLTPTFYD--NSCPNVSNIVRDTIVNELRSDPRIAASILRLHFEDCFVNGCDASILLDN 58
Query: 95 PNSEKTAPQNWGLG----AFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSY 150
S +T +G F +ID++K +E CP VSC+D+L +A + +V +AG PS+
Sbjct: 59 TTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSW 118
Query: 151 PVFTGRRDGMTSTKE--SVDLPSPSISWKESLACFQSKGLD-VQDMVTLLGAHTMGQTRC 207
V GRRD + + + + +LP+P + + F++ GL+ D+V L G HT G+ +C
Sbjct: 119 RVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQC 178
Query: 208 RYIVDRLYNYKNTGKPDPSMNTTLLNRLRKECPPRTRKGQSDPLVYLNPETGXXXXXXXX 267
R+I+DRLYN+ NTG PDP++NTT L LR CP G LV + T
Sbjct: 179 RFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRT--PTIFDNK 233
Query: 268 XXXXVKTHEAVLGVDQQLSNGDN--NTLQIVDEFAAGFEDFRKALALSMSRMGSINVLTG 325
++ + ++ DQ+L + N +T+ +V FA + F A +M RMG+I LTG
Sbjct: 234 YYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTG 293
Query: 326 KQGEIRRNCRCTNADT 341
QG+IR NCR N+++
Sbjct: 294 TQGQIRLNCRVVNSNS 309
>pdb|6ATJ|A Chain A, Recombinant Horseradish Peroxidase C Complex With Ferulic
Acid
pdb|7ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a Complex With
Cyanide And Ferulic Acid
pdb|1H5D|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-11% Dose)
pdb|1H5E|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (11-22% Dose)
pdb|1H5F|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (22-33% Dose)
pdb|1H5G|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (33-44% Dose)
pdb|1H5I|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (56-67% Dose)
pdb|1H5J|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (67-78% Dose)
pdb|1H5K|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (78-89% Dose)
pdb|1H5M|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (0-100% Dose)
pdb|1H55|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Ii
pdb|1H57|A Chain A, Structure Of Horseradish Peroxidase C1a Compound Iii
pdb|1H58|A Chain A, Structure Of Ferrous Horseradish Peroxidase C1a
pdb|1H5A|A Chain A, Structure Of Ferric Horseradish Peroxidase C1a In Complex
With Acetate
pdb|1H5C|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (100-200% Dose)
pdb|1H5H|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (44-56% Dose)
pdb|1H5L|A Chain A, X-Ray Induced Reduction Of Horseradish Peroxidase C1a
Compound Iii (89-100% Dose)
Length = 308
Score = 197 bits (502), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 113/305 (37%), Positives = 170/305 (55%), Gaps = 14/305 (4%)
Query: 46 NTCDDAEAYIRHQVELFYKHDKTIAPKLLRLLYSDCFVTGCDASILLDRPNSEKTAPQNW 105
N+C + +R + + D IA +LRL + DCFV GCDASILLD S +T +
Sbjct: 9 NSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAF 68
Query: 106 GLG----AFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPVFTGRRDGMT 161
G F +ID++K +E CP VSC+D+L +A + +V +AG PS+ V GRRD +
Sbjct: 69 GNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQ 128
Query: 162 STKE--SVDLPSPSISWKESLACFQSKGLD-VQDMVTLLGAHTMGQTRCRYIVDRLYNYK 218
+ + + +LP+P + + F++ GL+ D+V L G HT G+ +CR+I+DRLYN+
Sbjct: 129 AFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFS 188
Query: 219 NTGKPDPSMNTTLLNRLRKECPPRTRKGQSDPLVYLNPETGXXXXXXXXXXXXVKTHEAV 278
NTG PDP++NTT L LR CP G LV + T ++ + +
Sbjct: 189 NTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRT--PTIFDNKYYVNLEEQKGL 243
Query: 279 LGVDQQLSNGDN--NTLQIVDEFAAGFEDFRKALALSMSRMGSINVLTGKQGEIRRNCRC 336
+ DQ+L + N +T+ +V FA + F A +M RMG+I LTG QG+IR NCR
Sbjct: 244 IQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRV 303
Query: 337 TNADT 341
N+++
Sbjct: 304 VNSNS 308
>pdb|1W4W|A Chain A, Ferric Horseradish Peroxidase C1a In Complex With Formate
pdb|1W4Y|A Chain A, Ferrous Horseradish Peroxidase C1a In Complex With Carbon
Monoxide
Length = 323
Score = 197 bits (501), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 113/305 (37%), Positives = 170/305 (55%), Gaps = 14/305 (4%)
Query: 46 NTCDDAEAYIRHQVELFYKHDKTIAPKLLRLLYSDCFVTGCDASILLDRPNSEKTAPQNW 105
N+C + +R + + D IA +LRL + DCFV GCDASILLD S +T +
Sbjct: 9 NSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAF 68
Query: 106 GLG----AFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPVFTGRRDGMT 161
G F +ID++K +E CP VSC+D+L +A + +V +AG PS+ V GRRD +
Sbjct: 69 GNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQ 128
Query: 162 STKE--SVDLPSPSISWKESLACFQSKGLD-VQDMVTLLGAHTMGQTRCRYIVDRLYNYK 218
+ + + +LP+P + + F++ GL+ D+V L G HT G+ +CR+I+DRLYN+
Sbjct: 129 AFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFS 188
Query: 219 NTGKPDPSMNTTLLNRLRKECPPRTRKGQSDPLVYLNPETGXXXXXXXXXXXXVKTHEAV 278
NTG PDP++NTT L LR CP G LV + T ++ + +
Sbjct: 189 NTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRT--PTIFDNKYYVNLEEQKGL 243
Query: 279 LGVDQQLSNGDN--NTLQIVDEFAAGFEDFRKALALSMSRMGSINVLTGKQGEIRRNCRC 336
+ DQ+L + N +T+ +V FA + F A +M RMG+I LTG QG+IR NCR
Sbjct: 244 IQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRV 303
Query: 337 TNADT 341
N+++
Sbjct: 304 VNSNS 308
>pdb|2ATJ|A Chain A, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
pdb|2ATJ|B Chain B, Recombinant Horseradish Peroxidase Complex With
Benzhydroxamic Acid
Length = 308
Score = 197 bits (501), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 115/315 (36%), Positives = 174/315 (55%), Gaps = 16/315 (5%)
Query: 35 VKLEWHYYKVHNTCDDAEAYIRHQVELFYKHDKTIAPKLLRLLYSDCFVTGCDASILLDR 94
++L +Y N+C + +R + + D IA +LRL + DCFV GCDASILLD
Sbjct: 1 MQLTPTFYD--NSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDN 58
Query: 95 PNSEKTAPQNWGLG----AFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSY 150
S +T +G F +ID++K +E CP VSC+D+L +A + +V +AG PS+
Sbjct: 59 TTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSW 118
Query: 151 PVFTGRRDGMTSTKE--SVDLPSPSISWKESLACFQSKGLD-VQDMVTLLGAHTMGQTRC 207
V GRRD + + + + +LP+P + + F++ GL+ D+V L G HT G+ +C
Sbjct: 119 RVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQC 178
Query: 208 RYIVDRLYNYKNTGKPDPSMNTTLLNRLRKECPPRTRKGQSDPLVYLNPETGXXXXXXXX 267
R+I+DRLYN+ NTG PDP++NTT L LR CP G LV + T
Sbjct: 179 RFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRT--PTIFDNK 233
Query: 268 XXXXVKTHEAVLGVDQQLSNGDN--NTLQIVDEFAAGFEDFRKALALSMSRMGSINVLTG 325
++ + ++ DQ+L + N +T+ +V FA + F A +M RMG+I LTG
Sbjct: 234 YYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTG 293
Query: 326 KQGEIRRNCRCTNAD 340
QG+IR NCR N++
Sbjct: 294 TQGQIRLNCRVVNSN 308
>pdb|2YLJ|A Chain A, Horse Radish Peroxidase, Mutant S167y
Length = 306
Score = 197 bits (501), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 113/303 (37%), Positives = 168/303 (55%), Gaps = 14/303 (4%)
Query: 46 NTCDDAEAYIRHQVELFYKHDKTIAPKLLRLLYSDCFVTGCDASILLDRPNSEKTAPQNW 105
N+C + +R + + D IA +LRL + DCFV GCDASILLD S +T +
Sbjct: 9 NSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAF 68
Query: 106 GLG----AFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPVFTGRRDGMT 161
G F +ID++K +E CP VSC+D+L +A + +V +AG PS+ V GRRD +
Sbjct: 69 GNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQ 128
Query: 162 STKE--SVDLPSPSISWKESLACFQSKGLD-VQDMVTLLGAHTMGQTRCRYIVDRLYNYK 218
+ + + +LP+P + + F++ GL+ D+V L G HT G+ +CR+I+DRLYN+
Sbjct: 129 AFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALYGGHTFGKNQCRFIMDRLYNFS 188
Query: 219 NTGKPDPSMNTTLLNRLRKECPPRTRKGQSDPLVYLNPETGXXXXXXXXXXXXVKTHEAV 278
NTG PDP++NTT L LR CP G LV + T ++ + +
Sbjct: 189 NTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRT--PTIFDNKYYVNLEEQKGL 243
Query: 279 LGVDQQLSNGDN--NTLQIVDEFAAGFEDFRKALALSMSRMGSINVLTGKQGEIRRNCRC 336
+ DQ+L + N +T+ +V FA + F A +M RMG+I LTG QG+IR NCR
Sbjct: 244 IQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRV 303
Query: 337 TNA 339
N+
Sbjct: 304 VNS 306
>pdb|1GWO|A Chain A, Recombinant Horseradish Peroxidase C1a Ala170gln
Length = 309
Score = 197 bits (500), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 115/316 (36%), Positives = 174/316 (55%), Gaps = 16/316 (5%)
Query: 35 VKLEWHYYKVHNTCDDAEAYIRHQVELFYKHDKTIAPKLLRLLYSDCFVTGCDASILLDR 94
++L +Y N+C + +R + + D IA +LRL + DCFV GCDASILLD
Sbjct: 1 MQLTPTFYD--NSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDN 58
Query: 95 PNSEKTAPQNWGLG----AFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSY 150
S +T +G F +ID++K +E CP VSC+D+L +A + +V +AG PS+
Sbjct: 59 TTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSW 118
Query: 151 PVFTGRRDGMTSTKE--SVDLPSPSISWKESLACFQSKGLD-VQDMVTLLGAHTMGQTRC 207
V GRRD + + + + +LP P + + F++ GL+ D+V L G HT G+ +C
Sbjct: 119 RVPLGRRDSLQAFLDLANANLPQPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQC 178
Query: 208 RYIVDRLYNYKNTGKPDPSMNTTLLNRLRKECPPRTRKGQSDPLVYLNPETGXXXXXXXX 267
R+I+DRLYN+ NTG PDP++NTT L LR CP G LV + T
Sbjct: 179 RFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRT--PTIFDNK 233
Query: 268 XXXXVKTHEAVLGVDQQLSNGDN--NTLQIVDEFAAGFEDFRKALALSMSRMGSINVLTG 325
++ + ++ DQ+L + N +T+ +V FA + F A +M RMG+I LTG
Sbjct: 234 YYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTG 293
Query: 326 KQGEIRRNCRCTNADT 341
QG+IR NCR N+++
Sbjct: 294 TQGQIRLNCRVVNSNS 309
>pdb|1GWU|A Chain A, Recombinant Horseradish Peroxidase C1a Ala140gly
Length = 309
Score = 197 bits (500), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 115/316 (36%), Positives = 174/316 (55%), Gaps = 16/316 (5%)
Query: 35 VKLEWHYYKVHNTCDDAEAYIRHQVELFYKHDKTIAPKLLRLLYSDCFVTGCDASILLDR 94
++L +Y N+C + +R + + D IA +LRL + DCFV GCDASILLD
Sbjct: 1 MQLTPTFYD--NSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDN 58
Query: 95 PNSEKTAPQNWGLG----AFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSY 150
S +T +G F +ID++K +E CP VSC+D+L +A + +V +AG PS+
Sbjct: 59 TTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSW 118
Query: 151 PVFTGRRDGMTSTKE--SVDLPSPSISWKESLACFQSKGLD-VQDMVTLLGAHTMGQTRC 207
V GRRD + + + + +LP P + + F++ GL+ D+V L G HT G+ +C
Sbjct: 119 RVPLGRRDSLQAFLDLANANLPGPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQC 178
Query: 208 RYIVDRLYNYKNTGKPDPSMNTTLLNRLRKECPPRTRKGQSDPLVYLNPETGXXXXXXXX 267
R+I+DRLYN+ NTG PDP++NTT L LR CP G LV + T
Sbjct: 179 RFIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRT--PTIFDNK 233
Query: 268 XXXXVKTHEAVLGVDQQLSNGDN--NTLQIVDEFAAGFEDFRKALALSMSRMGSINVLTG 325
++ + ++ DQ+L + N +T+ +V FA + F A +M RMG+I LTG
Sbjct: 234 YYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTG 293
Query: 326 KQGEIRRNCRCTNADT 341
QG+IR NCR N+++
Sbjct: 294 TQGQIRLNCRVVNSNS 309
>pdb|1ATJ|A Chain A, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|B Chain B, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|C Chain C, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|D Chain D, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|E Chain E, Recombinant Horseradish Peroxidase C1a
pdb|1ATJ|F Chain F, Recombinant Horseradish Peroxidase C1a
pdb|1HCH|A Chain A, Structure Of Horseradish Peroxidase C1a Compound I
Length = 306
Score = 197 bits (500), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 113/303 (37%), Positives = 168/303 (55%), Gaps = 14/303 (4%)
Query: 46 NTCDDAEAYIRHQVELFYKHDKTIAPKLLRLLYSDCFVTGCDASILLDRPNSEKTAPQNW 105
N+C + +R + + D IA +LRL + DCFV GCDASILLD S +T +
Sbjct: 9 NSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAF 68
Query: 106 GLG----AFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPVFTGRRDGMT 161
G F +ID++K +E CP VSC+D+L +A + +V +AG PS+ V GRRD +
Sbjct: 69 GNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQ 128
Query: 162 STKE--SVDLPSPSISWKESLACFQSKGLD-VQDMVTLLGAHTMGQTRCRYIVDRLYNYK 218
+ + + +LP+P + + F++ GL+ D+V L G HT G+ +CR+I+DRLYN+
Sbjct: 129 AFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFS 188
Query: 219 NTGKPDPSMNTTLLNRLRKECPPRTRKGQSDPLVYLNPETGXXXXXXXXXXXXVKTHEAV 278
NTG PDP++NTT L LR CP G LV + T ++ + +
Sbjct: 189 NTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRT--PTIFDNKYYVNLEEQKGL 243
Query: 279 LGVDQQLSNGDN--NTLQIVDEFAAGFEDFRKALALSMSRMGSINVLTGKQGEIRRNCRC 336
+ DQ+L + N +T+ +V FA + F A +M RMG+I LTG QG+IR NCR
Sbjct: 244 IQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRV 303
Query: 337 TNA 339
N+
Sbjct: 304 VNS 306
>pdb|1GW2|A Chain A, Recombinant Horseradish Peroxidase C1a Thr171ser In
Complex With Ferulic Acid
Length = 308
Score = 196 bits (498), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 112/305 (36%), Positives = 170/305 (55%), Gaps = 14/305 (4%)
Query: 46 NTCDDAEAYIRHQVELFYKHDKTIAPKLLRLLYSDCFVTGCDASILLDRPNSEKTAPQNW 105
N+C + +R + + D IA +LRL + DCFV GCDASILLD S +T +
Sbjct: 9 NSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDNTTSFRTEKDAF 68
Query: 106 GLG----AFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPVFTGRRDGMT 161
G F +ID++K +E CP VSC+D+L +A + +V +AG PS+ V GRRD +
Sbjct: 69 GNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQ 128
Query: 162 STKE--SVDLPSPSISWKESLACFQSKGLD-VQDMVTLLGAHTMGQTRCRYIVDRLYNYK 218
+ + + +LP+P + + F++ GL+ D+V L G H+ G+ +CR+I+DRLYN+
Sbjct: 129 AFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHSFGKNQCRFIMDRLYNFS 188
Query: 219 NTGKPDPSMNTTLLNRLRKECPPRTRKGQSDPLVYLNPETGXXXXXXXXXXXXVKTHEAV 278
NTG PDP++NTT L LR CP G LV + T ++ + +
Sbjct: 189 NTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRT--PTIFDNKYYVNLEEQKGL 243
Query: 279 LGVDQQLSNGDN--NTLQIVDEFAAGFEDFRKALALSMSRMGSINVLTGKQGEIRRNCRC 336
+ DQ+L + N +T+ +V FA + F A +M RMG+I LTG QG+IR NCR
Sbjct: 244 IQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRV 303
Query: 337 TNADT 341
N+++
Sbjct: 304 VNSNS 308
>pdb|1GX2|A Chain A, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
pdb|1GX2|B Chain B, Recombinant Horseradish Peroxidase Phe209ser Complex With
Benzhydroxamic Acid
Length = 309
Score = 195 bits (496), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 115/316 (36%), Positives = 174/316 (55%), Gaps = 16/316 (5%)
Query: 35 VKLEWHYYKVHNTCDDAEAYIRHQVELFYKHDKTIAPKLLRLLYSDCFVTGCDASILLDR 94
++L +Y N+C + +R + + D IA +LRL + DCFV GCDASILLD
Sbjct: 1 MQLTPTFYD--NSCPNVSNIVRDTIVNELRSDPRIAASILRLHFHDCFVNGCDASILLDN 58
Query: 95 PNSEKTAPQNWGLG----AFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSY 150
S +T +G F +ID++K +E CP VSC+D+L +A + +V +AG PS+
Sbjct: 59 TTSFRTEKDAFGNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSW 118
Query: 151 PVFTGRRDGMTSTKE--SVDLPSPSISWKESLACFQSKGLD-VQDMVTLLGAHTMGQTRC 207
V GRRD + + + + +LP+P + + F++ GL+ D+V L G HT G+ +C
Sbjct: 119 RVPLGRRDSLQAFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQC 178
Query: 208 RYIVDRLYNYKNTGKPDPSMNTTLLNRLRKECPPRTRKGQSDPLVYLNPETGXXXXXXXX 267
R I+DRLYN+ NTG PDP++NTT L LR CP G LV + T
Sbjct: 179 RSIMDRLYNFSNTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRT--PTIFDNK 233
Query: 268 XXXXVKTHEAVLGVDQQLSNGDN--NTLQIVDEFAAGFEDFRKALALSMSRMGSINVLTG 325
++ + ++ DQ+L + N +T+ +V FA + F A +M RMG+I LTG
Sbjct: 234 YYVNLEEQKGLIQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTG 293
Query: 326 KQGEIRRNCRCTNADT 341
QG+IR NCR N+++
Sbjct: 294 TQGQIRLNCRVVNSNS 309
>pdb|1KZM|A Chain A, Distal Heme Pocket Mutant (r38s/h42e) Of Recombinant
Horseradish Peroxidase C (hrp C)
Length = 308
Score = 195 bits (496), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 112/305 (36%), Positives = 169/305 (55%), Gaps = 14/305 (4%)
Query: 46 NTCDDAEAYIRHQVELFYKHDKTIAPKLLRLLYSDCFVTGCDASILLDRPNSEKTAPQNW 105
N+C + +R + + D IA +L L + DCFV GCDASILLD S +T +
Sbjct: 9 NSCPNVSNIVRDTIVNELRSDPRIAASILSLHFEDCFVNGCDASILLDNTTSFRTEKDAF 68
Query: 106 GLG----AFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPVFTGRRDGMT 161
G F +ID++K +E CP VSC+D+L +A + +V +AG PS+ V GRRD +
Sbjct: 69 GNANSARGFPVIDRMKAAVESACPRTVSCADLLTIAAQQSVTLAGGPSWRVPLGRRDSLQ 128
Query: 162 STKE--SVDLPSPSISWKESLACFQSKGLD-VQDMVTLLGAHTMGQTRCRYIVDRLYNYK 218
+ + + +LP+P + + F++ GL+ D+V L G HT G+ +CR+I+DRLYN+
Sbjct: 129 AFLDLANANLPAPFFTLPQLKDSFRNVGLNRSSDLVALSGGHTFGKNQCRFIMDRLYNFS 188
Query: 219 NTGKPDPSMNTTLLNRLRKECPPRTRKGQSDPLVYLNPETGXXXXXXXXXXXXVKTHEAV 278
NTG PDP++NTT L LR CP G LV + T ++ + +
Sbjct: 189 NTGLPDPTLNTTYLQTLRGLCP---LNGNLSALVDFDLRT--PTIFDNKYYVNLEEQKGL 243
Query: 279 LGVDQQLSNGDN--NTLQIVDEFAAGFEDFRKALALSMSRMGSINVLTGKQGEIRRNCRC 336
+ DQ+L + N +T+ +V FA + F A +M RMG+I LTG QG+IR NCR
Sbjct: 244 IQSDQELFSSPNATDTIPLVRSFANSTQTFFNAFVEAMDRMGNITPLTGTQGQIRLNCRV 303
Query: 337 TNADT 341
N+++
Sbjct: 304 VNSNS 308
>pdb|4A5G|A Chain A, Raphanus Sativus Anionic Peroxidase.
pdb|4A5G|B Chain B, Raphanus Sativus Anionic Peroxidase
Length = 308
Score = 194 bits (492), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 119/311 (38%), Positives = 172/311 (55%), Gaps = 14/311 (4%)
Query: 36 KLEWHYYKVHNTCDDAEAYIRHQVELFYKHDKTIAPKLLRLLYSDCFVTGCDASILLDRP 95
L +Y TC +A A +R V+ ++ D I L+RL + DCFV GCDASILLD
Sbjct: 3 SLNATFYA--GTCPNASAMVRTIVQQAFQSDSRIGASLIRLHFHDCFVLGCDASILLDNS 60
Query: 96 NS---EKTAPQNWGLG-AFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYP 151
S EK A N F ++D IK LE CPG VSC+D+L LA++ +V ++G PS+
Sbjct: 61 GSIISEKNAGPNANSARGFNVVDNIKTALENACPGVVSCTDVLALASQASVSLSGGPSWT 120
Query: 152 VFTGRRDGMTSTKESVD--LPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCRY 209
V GRRD +T+ + + +PSP+ + F + GL+ D+V L GAHT G+ C
Sbjct: 121 VDLGRRDTLTANQAGANSSIPSPTQGLSNITSKFSAVGLNTNDLVALSGAHTFGRATCGV 180
Query: 210 IVDRLYNYKNTGKPDPSMNTTLLNRLRKECPPRTRKGQSDPLVYLNPETGXXXXXXXXXX 269
+RL+N+ G PDP++NTTLL+ L++ CP + R S L P+
Sbjct: 181 FSNRLFNFSGKGNPDPTLNTTLLSTLQELCPQKGRGSGSTNLDLSTPDA-----FDNNYF 235
Query: 270 XXVKTHEAVLGVDQQL-SNGDNNTLQIVDEFAAGFEDFRKALALSMSRMGSINVLTGKQG 328
++++ +L DQ+L S + T+ IV FA+ F +A A SM MG+I+ LTG G
Sbjct: 236 TNLQSNNGLLQSDQELFSTTGSATIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSSG 295
Query: 329 EIRRNCRCTNA 339
EIR +C+ TN
Sbjct: 296 EIRLDCKKTNG 306
>pdb|1QGJ|A Chain A, Arabidopsis Thaliana Peroxidase N
pdb|1QGJ|B Chain B, Arabidopsis Thaliana Peroxidase N
Length = 300
Score = 187 bits (474), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 108/297 (36%), Positives = 159/297 (53%), Gaps = 12/297 (4%)
Query: 47 TCDDAEAYIRHQVELFYKHDKTIAPKLLRLLYSDCFVTGCDASILLDRPNSEKTAPQNWG 106
+C + +R QV + K + +A L+RL + DCFV GCDAS+LLD +SEK A N
Sbjct: 10 SCPNLVQIVRKQVAIALKAEIRMAASLIRLHFHDCFVNGCDASLLLDGADSEKLAIPNIN 69
Query: 107 LG-AFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPVFTGRRDGMTSTKE 165
F +ID IK +E CPG VSC+DIL LA RD+V ++G P + V GR+DG+ + +
Sbjct: 70 SARGFEVIDTIKAAVENACPGVVSCADILTLAARDSVVLSGGPGWRVALGRKDGLVANQN 129
Query: 166 SV-DLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCRYIVDRLYNYKNTGKPD 224
S +LPSP +A F + L++ D+V L GAHT GQ +C +RL+N+ G PD
Sbjct: 130 SANNLPSPFEPLDAIIAKFVAVNLNITDVVALSGAHTFGQAKCAVFSNRLFNFTGAGNPD 189
Query: 225 PSMNTTLLNRLRKECPPRTRKGQSDPLVYLNPETGXXXXXXXXXXXXVKTHEAVLGVDQQ 284
++ T+LL+ L+ CP + PL +T + + +L DQ
Sbjct: 190 ATLETSLLSNLQTVCPLGGNSNITAPLDRSTTDT-----FDNNYFKNLLEGKGLLSSDQI 244
Query: 285 LSNGD---NNTLQIVDEFAAGFEDFRKALALSMSRMGSINVLTGKQGEIRRNCRCTN 338
L + D N T ++V+ ++ F + +M RMG N+ G GE+R NCR N
Sbjct: 245 LFSSDLAVNTTKKLVEAYSRSQSLFFRDFTCAMIRMG--NISNGASGEVRTNCRVIN 299
>pdb|1FHF|A Chain A, The Structure Of Soybean Peroxidase
pdb|1FHF|B Chain B, The Structure Of Soybean Peroxidase
pdb|1FHF|C Chain C, The Structure Of Soybean Peroxidase
Length = 304
Score = 176 bits (447), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 107/281 (38%), Positives = 150/281 (53%), Gaps = 12/281 (4%)
Query: 66 DKTIAPKLLRLLYSDCFVTGCDASILL---DRPNSEKTA-PQNWGLGAFVLIDKIKVVLE 121
D I L+RL + DCFV GCD S+LL D SE+ A P + +++ IK +E
Sbjct: 29 DPRIGASLMRLHFHDCFVQGCDGSVLLNNTDTIESEQDALPNINSIRGLDVVNDIKTAVE 88
Query: 122 QRCPGAVSCSDILNLATRDAVHMAGAPSYPVFTGRRDGMTS--TKESVDLPSPSISWKES 179
CP VSC+DIL +A A + G P +PV GRRD +T+ T + +LP+P + +
Sbjct: 89 NSCPDTVSCADILAIAAEIASVLGGGPGWPVPLGRRDSLTANRTLANQNLPAPFFNLTQL 148
Query: 180 LACFQSKGLDVQDMVTLLGAHTMGQTRCRYIVDRLYNYKNTGKPDPSMNTTLLNRLRKEC 239
A F +GL+ D+VTL G HT G+ RC ++RLYN+ NTG PDP++NTT L LR C
Sbjct: 149 KASFAVQGLNTLDLVTLSGGHTFGRARCSTFINRLYNFSNTGNPDPTLNTTYLEVLRARC 208
Query: 240 PPRTRKGQSDPLVYLNPETGXXXXXXXXXXXXVKTHEAVLGVDQQL-SNGDNNTLQIVDE 298
P + D L L+ T + +L DQ+L S +T+ IV+
Sbjct: 209 P---QNATGDNLTNLDLST--PDQFDNRYYSNLLQLNGLLQSDQELFSTPGADTIPIVNS 263
Query: 299 FAAGFEDFRKALALSMSRMGSINVLTGKQGEIRRNCRCTNA 339
F++ F +SM +MG+I VLTG +GEIR C N
Sbjct: 264 FSSNQNTFFSNFRVSMIKMGNIGVLTGDEGEIRLQCNFVNG 304
>pdb|1BGP|A Chain A, Crystal Structure Of Barley Grain Peroxidase 1
Length = 309
Score = 168 bits (426), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 120/316 (37%), Positives = 166/316 (52%), Gaps = 33/316 (10%)
Query: 37 LEWHYYKVHNTCDDAEAYIRHQVELFYKHDKTIAPKLLRLLYSDCFVTGCDASILLDRPN 96
L + +Y TC AE+ +R V+ + D +A LLRL + DCFV GCDAS+LLD
Sbjct: 9 LSFDFY--WQTCPRAESIVREFVQEAVRKDIGLAAGLLRLHFHDCFVQGCDASVLLDGSA 66
Query: 97 S---EKTAPQNWGL--GAFVLIDKIKVVLEQRCPGA-VSCSDILNLATRDAVHMAGAPSY 150
+ E+ AP N L AF ++ I+ LE+ C GA VSCSDIL LA RD+V ++G P Y
Sbjct: 67 TGPGEQQAPPNLTLRPSAFKAVNDIRDRLERECRGAVVSCSDILALAARDSVVVSGGPDY 126
Query: 151 PVFTGRRD--GMTSTKESV-DLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRC 207
V GRRD ST++ + DLP PS + + LA GLD D+VT+ G HT+G C
Sbjct: 127 RVPLGRRDSRSFASTQDVLSDLPGPSSNVQSLLALLGRLGLDATDLVTISGGHTIGLAHC 186
Query: 208 RYIVDRLYNYKNTGKPDPSMNTTLLNRLRKECPP-----RTRKGQSDPLVYLNPETGXXX 262
DRL+ +PDP+++ T L+RL++ CP RT P V+ N
Sbjct: 187 SSFEDRLFP-----RPDPTISPTFLSRLKRTCPAKGTDRRTVLDVRTPNVFDN------- 234
Query: 263 XXXXXXXXXVKTHEAVLGVDQQLSNGDNNTLQIVDEFAAGFEDFRKALALSMSRMGSINV 322
+ E + DQ L + T IV+ FA +DF + +S+ +MG + V
Sbjct: 235 ----KYYIDLVNREGLFVSDQDLFT-NAITRPIVERFAQSQQDFFEQFGVSIGKMGQMRV 289
Query: 323 LTGKQGEIRRNCRCTN 338
T QGE+RRNC N
Sbjct: 290 RTSDQGEVRRNCSVRN 305
>pdb|1SCH|A Chain A, Peanut Peroxidase
pdb|1SCH|B Chain B, Peanut Peroxidase
Length = 294
Score = 166 bits (421), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 107/308 (34%), Positives = 153/308 (49%), Gaps = 21/308 (6%)
Query: 37 LEWHYYKVHNTCDDAEAYIRHQVELFYKHDKTIAPKLLRLLYSDCFVTGCDASILLDRPN 96
L ++Y C +A + I+ V + + LLRL + DCFV GCDAS+LLD +
Sbjct: 2 LSSNFYATK--CPNALSTIKSAVNSAVAKEARMGASLLRLHFHDCFVQGCDASVLLDDTS 59
Query: 97 S---EKTA-PQNWGLGAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
+ EKTA P + F +ID IK +E CPG VSC+DIL +A RD+V G S+ V
Sbjct: 60 NFTGEKTAGPNANSIRGFEVIDTIKSQVESLCPGVVSCADILAVAARDSVVALGGASWNV 119
Query: 153 FTGRRDGMTSTKESV--DLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCRYI 210
GRRD T++ S DLP+P + ++ F +KG +++VTL GAHT+GQ +C
Sbjct: 120 LLGRRDSTTASLSSANSDLPAPFFNLSGLISAFSNKGFTTKELVTLSGAHTIGQAQCTAF 179
Query: 211 VDRLYNYKNTGKPDPSMNTTLLNRLRKECPPRTRKGQSDPLVYLNPETGXXXXXXXXXXX 270
R+YN N DP T L+ CP P P
Sbjct: 180 RTRIYNESNI---DP----TYAKSLQANCPSVGGDTNLSPFDVTTPN-----KFDNAYYI 227
Query: 271 XVKTHEAVLGVDQQLSNGDNNTLQIVDEFAAGFEDFRKALALSMSRMGSINVLTGKQGEI 330
++ + +L DQQL NG + Q+ ++ F +M +MG+++ LTG G+I
Sbjct: 228 NLRNKKGLLHSDQQLFNGVSTDSQVT-AYSNNAATFNTDFGNAMIKMGNLSPLTGTSGQI 286
Query: 331 RRNCRCTN 338
R NCR TN
Sbjct: 287 RTNCRKTN 294
>pdb|3HDL|A Chain A, Crystal Structure Of Highly Glycosylated Peroxidase From
Royal Palm Tree
Length = 304
Score = 163 bits (413), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 104/309 (33%), Positives = 158/309 (51%), Gaps = 12/309 (3%)
Query: 37 LEWHYYKVHNTCDDAEAYIRHQVELFYKHDKTIAPKLLRLLYSDCFVTGCDASILLDRP- 95
L+ +Y + +C AE+ ++ V + ++ IAP L+R+ + DCFV GCDAS+LLD
Sbjct: 2 LQIGFY--NTSCPTAESLVQQAVAAAFANNSGIAPGLIRMHFHDCFVRGCDASVLLDSTA 59
Query: 96 --NSEKTA-PQNWGLGAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
+EK A P N L F +I K +E CP VSC+DIL A RD+ ++AG +Y V
Sbjct: 60 NNTAEKDAIPNNPSLRGFEVITAAKSAVEAACPQTVSCADILAFAARDSANLAGNITYQV 119
Query: 153 FTGRRDGMTS--TKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCRYI 210
+GRRDG S ++ + +PSP + + + F +K L +MVTL GAH++G C
Sbjct: 120 PSGRRDGTVSLASEANAQIPSPLFNATQLINSFANKTLTADEMVTLSGAHSIGVAHCSSF 179
Query: 211 VDRLYNYKNTGKPDPSMNTTLLNRLRKECPPRTRKGQSDPLVYLNPETGXXXXXXXXXXX 270
+RLYN+ + DP+++ + LR CP + + + ++ +
Sbjct: 180 TNRLYNFNSGSGIDPTLSPSYAALLRNTCPANSTRFTP---ITVSLDIITPSVLDNMYYT 236
Query: 271 XVKTHEAVLGVDQQLSNGDNNTLQIVDEFAAGFEDFRKALALSMSRMGSINVLTGKQGEI 330
V+ +L DQ L + N V A + A +M +MG I VLTG QGEI
Sbjct: 237 GVQLTLGLLTSDQALVT-EANLSAAVKANAMNLTAWASKFAQAMVKMGQIEVLTGTQGEI 295
Query: 331 RRNCRCTNA 339
R NC N+
Sbjct: 296 RTNCSVVNS 304
>pdb|3RIW|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
pdb|3RIW|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Mutant C197t
Length = 271
Score = 45.8 bits (107), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 66/162 (40%), Gaps = 11/162 (6%)
Query: 55 IRHQVELFYKHDKTIAPKLLRLLYS-----DCFVTGCDASILLDRPNSEKTAPQNWGLGA 109
+R +E + P L+RL + DCF + R E N GL
Sbjct: 12 LRADIEDMISEKLELGPSLIRLAWHEAASYDCFKKDGSPNSASMRFKPECLYAGNKGLD- 70
Query: 110 FVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPVFTGRRDGMTSTKESVD- 168
+ K L+++ P +S +D+ LA A+ G P+ P GR D + D
Sbjct: 71 --IPRKALETLKKKYP-QISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDG 127
Query: 169 -LPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCRY 209
LP S + F+ G + Q+ V L+GAHT G+T +
Sbjct: 128 RLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGETHIEF 169
>pdb|4GED|A Chain A, Crystal Structure Of The Leishmania Major
Peroxidase-Cytochrome C Complex
Length = 268
Score = 43.9 bits (102), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 65/162 (40%), Gaps = 11/162 (6%)
Query: 55 IRHQVELFYKHDKTIAPKLLRLLYS-----DCFVTGCDASILLDRPNSEKTAPQNWGLGA 109
+R +E + P L+RL + DCF + R E N GL
Sbjct: 11 LRADIEDMISEKLELGPSLIRLAWHEAASYDCFKKDGSPNSASMRFKPECLYAGNKGLD- 69
Query: 110 FVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPVFTGRRDGMTSTKESVD- 168
+ K L+++ P +S +D+ LA A+ G P+ P GR D + D
Sbjct: 70 --IPRKALETLKKKYP-QISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDG 126
Query: 169 -LPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCRY 209
LP S + F+ G + Q+ V L+GAHT G+ +
Sbjct: 127 RLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGECHIEF 168
>pdb|3RIV|A Chain A, The Crystal Structure Of Leishmania Major Peroxidase
pdb|3RIV|B Chain B, The Crystal Structure Of Leishmania Major Peroxidase
Length = 271
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 65/162 (40%), Gaps = 11/162 (6%)
Query: 55 IRHQVELFYKHDKTIAPKLLRLLYS-----DCFVTGCDASILLDRPNSEKTAPQNWGLGA 109
+R +E + P L+RL + DCF + R E N GL
Sbjct: 12 LRADIEDMISEKLELGPSLIRLAWHEAASYDCFKKDGSPNSASMRFKPECLYAGNKGLD- 70
Query: 110 FVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPVFTGRRDGMTSTKESVD- 168
+ K L+++ P +S +D+ LA A+ G P+ P GR D + D
Sbjct: 71 --IPRKALETLKKKYP-QISYADLWVLAAYVAIEYMGGPTIPFCWGRVDAKDGSVCGPDG 127
Query: 169 -LPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCRY 209
LP S + F+ G + Q+ V L+GAHT G+ +
Sbjct: 128 RLPDGSKTQSHVREVFRRLGFNDQETVALIGAHTCGECHIEF 169
>pdb|1IYN|A Chain A, Crystal Structure Of Chloroplastic Ascorbate Peroxidase
From Tobacco Plants And Structural Insights For Its
Instability
Length = 295
Score = 42.0 bits (97), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 12/88 (13%)
Query: 127 AVSCSDILNLATRDAVHMAGAPSYPVFTGRRDGMTSTKE--------SVDLPSPSISWKE 178
V+ +D+ LA+ A+ AG P P+ GR D +T ++ PSP+ ++
Sbjct: 86 GVTYADLFQLASATAIEEAGGPKIPMKYGRVD-VTEPEQCPEEGRLPDAGPPSPAQHLRD 144
Query: 179 SLACFQSKGLDVQDMVTLLGAHTMGQTR 206
F GL+ +++V L GAHT+G++R
Sbjct: 145 ---VFYRMGLNDKEIVALSGAHTLGRSR 169
>pdb|1JCI|A Chain A, Stabilization Of The Engineered Cation-Binding Loop In
Cytochrome C Peroxidase (Ccp)
Length = 294
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 62/148 (41%), Gaps = 10/148 (6%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 72 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 126
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCRYIV 211
GR D +T ++ LP FQ ++ +++V L+GAHT+G+T +
Sbjct: 127 RCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHLK--- 183
Query: 212 DRLYNYKNTGKPDPSMNTTLLNRLRKEC 239
+ Y T P+ N+ LN L ++
Sbjct: 184 NSGYEGPWTANPNVFDNSFYLNLLNEDW 211
>pdb|1APX|A Chain A, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|B Chain B, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|C Chain C, Crystal Structure Of Recombinant Ascorbate Peroxidase
pdb|1APX|D Chain D, Crystal Structure Of Recombinant Ascorbate Peroxidase
Length = 249
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 128 VSCSDILNLATRDAVHMAGAPSYPVFTGRRDGMTSTKESVDLPSPSISWKESLACF-QSK 186
VS +D LA AV + G P P GR D E LP + F ++
Sbjct: 90 VSYADFYQLAGVVAVEITGGPEVPFHPGREDKPEPPPEG-RLPDATKGSDHLRDVFGKAM 148
Query: 187 GLDVQDMVTLLGAHTMG 203
GL QD+V L G HT+G
Sbjct: 149 GLSDQDIVALSGGHTIG 165
>pdb|1SOG|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m2
Length = 294
Score = 37.0 bits (84), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 72 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 126
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAHT+G+T +
Sbjct: 127 RCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHLK 183
>pdb|1JDR|A Chain A, Crystal Structure Of A Proximal Domain Potassium Binding
Variant Of Cytochrome C Peroxidase
Length = 294
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 72 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 126
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAHT+G+T +
Sbjct: 127 RCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHLK 183
>pdb|1KRJ|A Chain A, Engineering Calcium-Binding Site Into Cytochrome C
Peroxidase (Ccp)
Length = 294
Score = 37.0 bits (84), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 72 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 126
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAHT+G+T +
Sbjct: 127 RCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHTLGKTHLK 183
>pdb|2GGN|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHC|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHD|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHE|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2VCN|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant W41a
pdb|2VNX|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a After Exposure To A High Dose Of X-Rays
pdb|2VNZ|X Chain X, Crystal Structure Of Dithinonite Reduced Soybean Ascorbate
Peroxidase Mutant W41a.
pdb|2VO2|X Chain X, Crystal Structure Of Soybean Ascorbate Peroxidase Mutant
W41a Subjected To Low Dose X-Rays
pdb|2WD4|A Chain A, Ascorbate Peroxidase As A Heme Oxygenase: W41a Variant
Product With T-Butyl Peroxide
Length = 261
Score = 36.2 bits (82), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 128 VSCSDILNLATRDAVHMAGAPSYPVFTGRRDGMTSTKESVDLPSPSISWKESLACF-QSK 186
+S +D LA AV + G P P GR D E LP + F ++
Sbjct: 102 LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEG-RLPDATKGSDHLRDVFGKAM 160
Query: 187 GLDVQDMVTLLGAHTMG 203
GL QD+V L G HT+G
Sbjct: 161 GLTDQDIVALSGGHTIG 177
>pdb|3ZCY|A Chain A, Ascorbate Peroxidase W41a-h42y Mutant
Length = 249
Score = 36.2 bits (82), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 128 VSCSDILNLATRDAVHMAGAPSYPVFTGRRDGMTSTKESVDLPSPSISWKESLACF-QSK 186
+S +D LA AV + G P P GR D E LP + F ++
Sbjct: 90 LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEG-RLPDATKGSDHLRDVFGKAM 148
Query: 187 GLDVQDMVTLLGAHTMG 203
GL QD+V L G HT+G
Sbjct: 149 GLTDQDIVALSGGHTIG 165
>pdb|3ZCG|A Chain A, Ascorbate Peroxidase W41a-h42c Mutant
Length = 261
Score = 35.8 bits (81), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 128 VSCSDILNLATRDAVHMAGAPSYPVFTGRRDGMTSTKESVDLPSPSISWKESLACF-QSK 186
+S +D LA AV + G P P GR D E LP + F ++
Sbjct: 102 LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEG-RLPDATKGSDHLRDVFGKAM 160
Query: 187 GLDVQDMVTLLGAHTMG 203
GL QD+V L G HT+G
Sbjct: 161 GLTDQDIVALSGGHTIG 177
>pdb|3ZCH|A Chain A, Ascorbate Peroxidase W41a-h42m Mutant
Length = 261
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 128 VSCSDILNLATRDAVHMAGAPSYPVFTGRRDGMTSTKESVDLPSPSISWKESLACF-QSK 186
+S +D LA AV + G P P GR D E LP + F ++
Sbjct: 102 LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEG-RLPDATKGSDHLRDVFGKAM 160
Query: 187 GLDVQDMVTLLGAHTMG 203
GL QD+V L G HT+G
Sbjct: 161 GLTDQDIVALSGGHTIG 177
>pdb|1OAF|A Chain A, Ascobate Peroxidase From Soybean Cytosol In Complex With
Ascorbate
pdb|1OAG|A Chain A, Ascorbate Peroxidase From Soybean Cytosol
pdb|1V0H|X Chain X, Ascobate Peroxidase From Soybean Cytosol In Complex With
Salicylhydroxamic Acid
pdb|2GHH|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
pdb|2GHK|X Chain X, Conformational Mobility In The Active Site Of A Heme
Peroxidase
Length = 261
Score = 35.8 bits (81), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 128 VSCSDILNLATRDAVHMAGAPSYPVFTGRRDGMTSTKESVDLPSPSISWKESLACF-QSK 186
+S +D LA AV + G P P GR D E LP + F ++
Sbjct: 102 LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEG-RLPDATKGSDHLRDVFGKAM 160
Query: 187 GLDVQDMVTLLGAHTMG 203
GL QD+V L G HT+G
Sbjct: 161 GLTDQDIVALSGGHTIG 177
>pdb|2VCF|X Chain X, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase
Length = 264
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 128 VSCSDILNLATRDAVHMAGAPSYPVFTGRRDGMTSTKESVDLPSPSISWKESLACF-QSK 186
+S +D LA AV + G P P GR D E LP + F ++
Sbjct: 102 LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEG-RLPDATKGSDHLRDVFGKAM 160
Query: 187 GLDVQDMVTLLGAHTMG 203
GL QD+V L G HT+G
Sbjct: 161 GLTDQDIVALSGGHTIG 177
>pdb|2Y6B|A Chain A, Ascorbate Peroxidase R38k Mutant
Length = 249
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 128 VSCSDILNLATRDAVHMAGAPSYPVFTGRRDGMTSTKESVDLPSPSISWKESLACF-QSK 186
+S +D LA AV + G P P GR D E LP + F ++
Sbjct: 90 LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEG-RLPDATKGSDHLRDVFGKAM 148
Query: 187 GLDVQDMVTLLGAHTMG 203
GL QD+V L G HT+G
Sbjct: 149 GLTDQDIVALSGGHTIG 165
>pdb|2XIF|A Chain A, The Structure Of Ascorbate Peroxidase Compound Ii
pdb|2XIH|A Chain A, The Structure Of Ascorbate Peroxidase Compound Iii
pdb|2XI6|A Chain A, The Structure Of Ascorbate Peroxidase Compound I
pdb|2XJ6|A Chain A, The Structure Of Ferrous Ascorbate Peroxidase
Length = 249
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 128 VSCSDILNLATRDAVHMAGAPSYPVFTGRRDGMTSTKESVDLPSPSISWKESLACF-QSK 186
+S +D LA AV + G P P GR D E LP + F ++
Sbjct: 90 LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEG-RLPDATKGSDHLRDVFGKAM 148
Query: 187 GLDVQDMVTLLGAHTMG 203
GL QD+V L G HT+G
Sbjct: 149 GLTDQDIVALSGGHTIG 165
>pdb|1S6V|A Chain A, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
pdb|1S6V|C Chain C, Structure Of A Cytochrome C Peroxidase-Cytochrome C Site
Specific Cross-Link
Length = 294
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 72 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 126
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAH +G+T +
Sbjct: 127 RAGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLK 183
>pdb|2VCS|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytosolic Soybean
Ascorbate Peroxidase Mutant H42a
Length = 261
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 128 VSCSDILNLATRDAVHMAGAPSYPVFTGRRDGMTSTKESVDLPSPSISWKESLACF-QSK 186
+S +D LA AV + G P P GR D E LP + F ++
Sbjct: 102 LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEG-RLPDATKGSDHLRDVFGKAM 160
Query: 187 GLDVQDMVTLLGAHTMG 203
GL QD+V L G HT+G
Sbjct: 161 GLTDQDIVALSGGHTIG 177
>pdb|2CL4|X Chain X, Ascorbate Peroxidase R172a Mutant
Length = 261
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 128 VSCSDILNLATRDAVHMAGAPSYPVFTGRRDGMTSTKESVDLPSPSISWKESLACF-QSK 186
+S +D LA AV + G P P GR D E LP + F ++
Sbjct: 102 LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEG-RLPDATKGSDHLRDVFGKAM 160
Query: 187 GLDVQDMVTLLGAHTMG 203
GL QD+V L G HT+G
Sbjct: 161 GLTDQDIVALSGGHTIG 177
>pdb|1CYF|A Chain A, Identifying The Physiological Electron Transfer Site Of
Cytochrome C Peroxidase By Structure-Based Engineering
Length = 296
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 74 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 128
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAH +G+T +
Sbjct: 129 RAGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 185
>pdb|2Y6A|A Chain A, Ascorbate Peroxidase R38a Mutant
Length = 249
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 128 VSCSDILNLATRDAVHMAGAPSYPVFTGRRDGMTSTKESVDLPSPSISWKESLACF-QSK 186
+S +D LA AV + G P P GR D E LP + F ++
Sbjct: 90 LSYADFYQLAGVVAVEVTGGPEVPFHPGREDKPEPPPEG-RLPDATKGSDHLRDVFGKAM 148
Query: 187 GLDVQDMVTLLGAHTMG 203
GL QD+V L G HT+G
Sbjct: 149 GLTDQDIVALSGGHTIG 165
>pdb|1KXN|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 289
Score = 35.4 bits (80), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 54/144 (37%), Gaps = 17/144 (11%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 69 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 123
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCRYIV 211
GR D +T ++ LP FQ ++ +++V L+GAH +G+T
Sbjct: 124 RCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL---- 179
Query: 212 DRLYNYKNTGKPDPSMNTTLLNRL 235
KN+G N N
Sbjct: 180 ------KNSGYEGGGANNVFTNEF 197
>pdb|2X07|A Chain A, Cytochrome C Peroxidase: Engineered Ascorbate Binding Site
pdb|2X08|A Chain A, Cytochrome C Peroxidase: Ascorbate Bound To The Engineered
Ascorbate Binding Site
Length = 293
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 71 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 125
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAH +G+T +
Sbjct: 126 RCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLK 182
>pdb|2XJ5|A Chain A, The Structure Of Cytochrome C Peroxidase Compound Ii
pdb|2XJ8|A Chain A, The Structure Of Ferrous Cytochrome C Peroxidase
Length = 294
Score = 35.4 bits (80), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 72 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 126
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAH +G+T +
Sbjct: 127 RCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLK 183
>pdb|3M23|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M25|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M26|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M27|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M28|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M29|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2A|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2B|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2C|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2D|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2E|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2F|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2G|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2H|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
pdb|3M2I|A Chain A, Crystallographic And Single Crystal Spectral Analysis Of
The Peroxidase Ferryl Intermediate
Length = 291
Score = 35.0 bits (79), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 69 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 123
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAH +G+T +
Sbjct: 124 RCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLK 180
>pdb|1STQ|A Chain A, Cyrstal Structure Of Cytochrome C Peroxidase Mutant:
Ccpk2m3
Length = 294
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 72 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 126
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L GAHT+G+T +
Sbjct: 127 RCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALSGAHTLGKTHLK 183
>pdb|3E2O|A Chain A, Crystal Structure Of Cytochrome C Peroxidase, N184r Mutant
Length = 294
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 72 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 126
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAH +G+T +
Sbjct: 127 RCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLK 183
>pdb|3R98|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
pdb|3R99|A Chain A, Joint Neutron And X-Ray Structure Of Cytochrome C
Peroxidase
Length = 293
Score = 35.0 bits (79), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 71 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 125
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAH +G+T +
Sbjct: 126 RCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLK 182
>pdb|1KXM|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Transfer Pathway Excised To Form A
Ligand Binding Channel
Length = 290
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 54/144 (37%), Gaps = 17/144 (11%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 70 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 124
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCRYIV 211
GR D +T ++ LP FQ ++ +++V L+GAH +G+T
Sbjct: 125 RCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHL---- 180
Query: 212 DRLYNYKNTGKPDPSMNTTLLNRL 235
KN+G N N
Sbjct: 181 ------KNSGYEGGGANNVFTNEF 198
>pdb|2XIL|A Chain A, The Structure Of Cytochrome C Peroxidase Compound I
Length = 294
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 72 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 126
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAH +G+T +
Sbjct: 127 RCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLK 183
>pdb|1BEJ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 35.0 bits (79), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 69 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 123
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAH +G+T +
Sbjct: 124 RCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 180
>pdb|1BEQ|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
pdb|1BES|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 69 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 123
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAH +G+T +
Sbjct: 124 RCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 180
>pdb|1BEM|A Chain A, Interaction Between Proximal And Distals Regions Of
Cytochrome C Peroxidase
Length = 291
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 69 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 123
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAH +G+T +
Sbjct: 124 RCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 180
>pdb|1CPG|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 35.0 bits (79), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 74 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 128
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAH +G+T +
Sbjct: 129 RCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 185
>pdb|1KOK|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase
(Mpccp)
pdb|1ZBY|A Chain A, High-resolution Crystal Structure Of Native (resting)
Cytochrome C Peroxidase (ccp)
pdb|1ZBZ|A Chain A, High-Resolution Crystal Structure Of Compound I
Intermediate Of Cytochrome C Peroxidase (Ccp)
pdb|1S73|A Chain A, Crystal Structure Of Mesopone Cytochrome C Peroxidase (R-
Isomer) [mpccp-R]
pdb|1SBM|A Chain A, Crystal Structure Of Reduced Mesopone Cytochrome C
Peroxidase (R-Isomer)
pdb|1Z53|A Chain A, The 1.13 Angstrom Structure Of Iron-Free Cytochrome C
Peroxidase
pdb|1SDQ|A Chain A, Structure Of Reduced-No Adduct Of Mesopone Cytochrome C
Peroxidase
pdb|2B0Z|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82i Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B10|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82s Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B11|C Chain C, Crystal Structure Of The Protein-Protein Complex Between
F82w Cytochrome C And Cytochrome C Peroxidase
pdb|2B12|A Chain A, Crystal Structure Of The Protein-Protein Complex Between
F82y Cytochrome C And Cytochrome C Peroxidase
pdb|2CYP|A Chain A, Crystal Structure Of Yeast Cytochrome C Peroxidase Refined
At 1.7-Angstroms Resolution
pdb|2YCG|A Chain A, Structure Of Unreduced Ferric Cytochrome C Peroxidase
Obtained By Multicrystal Method
Length = 294
Score = 35.0 bits (79), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 72 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 126
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAH +G+T +
Sbjct: 127 RCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLK 183
>pdb|3EXB|A Chain A, Crystal Structure Of Cytochrome C Peroxidase With A
Proposed Electron Pathway Excised In A Complex With A
Peptide Wire
Length = 295
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 75 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 129
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAH +G+T +
Sbjct: 130 RCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 186
>pdb|1MK8|A Chain A, Crystal Structure Of A Mutant Cytochrome C Peroxidase
Showing A Novel Trp-Tyr Covalent Cross-Link
pdb|1MKQ|A Chain A, Crystal Structure Of The Mutant Variant Of Cytochrome C
Peroxidase In The 'open' Uncross-Linked Form
pdb|1MKR|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase (Plate Like Crystals)
pdb|1ML2|A Chain A, Crystal Structure Of A Mutant Variant Of Cytochrome C
Peroxidase With Zn(Ii)-(20-Oxo-Protoporphyrin Ix)
Length = 294
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 72 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 126
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAH +G+T +
Sbjct: 127 RCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLK 183
>pdb|2ANZ|A Chain A, Cytochrome C Peroxidase In Complex With
2,6-Diaminopyridine
pdb|1AC4|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2,3,4-Trimethyl-1,3-Thiazole)
pdb|1AC8|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (3,4,5-Trimethylthiazole)
pdb|1AEB|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Methylthiazole)
pdb|1AED|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3,4-
Dimethylthiazole)
pdb|1AEE|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Aniline)
pdb|1AEF|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (3-
Aminopyridine)
pdb|1AEG|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (4-
Aminopyridine)
pdb|1AEH|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-4-
Methylthiazole)
pdb|1AEJ|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (1-
Vinylimidazole)
pdb|1AEK|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Indoline)
pdb|1AEM|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazo[1,2-
A]pyridine)
pdb|1AEN|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-Amino-5-
Methylthiazole)
pdb|1AEO|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (2-
Aminopyridine)
pdb|1AEQ|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (2-Ethylimidazole)
pdb|1AES|A Chain A, Specificity Of Ligand Binding To A Buried Polar Cavity At
The Active Site Of Cytochrome C Peroxidase (Imidazole)
pdb|1AET|A Chain A, Variation In The Strength Of A Ch To O Hydrogen Bond In An
Artificial Protein Cavity (1-Methylimidazole)
pdb|1AEU|A Chain A, Specificity Of Ligand Binding In A Polar Cavity Of
Cytochrome C Peroxidase (2-Methylimidazole)
pdb|1AEV|A Chain A, Introduction Of Novel Substrate Oxidation Into Cytochrome
C Peroxidase By Cavity Complementation: Oxidation Of 2-
Aminothiazole And Covalent Modification Of The Enzyme
(2- Aminothiazole)
Length = 294
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 72 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 126
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAH +G+T +
Sbjct: 127 RCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 183
>pdb|1CCK|A Chain A, Altering Substrate Specificity Of Cytochrome C Peroxidase
Towards A Small Molecular Substrate Peroxidase By
Substituting Tyrosine For Phe 202
Length = 291
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 69 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 123
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAH +G+T +
Sbjct: 124 RCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 180
>pdb|4CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 74 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 128
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAH +G+T +
Sbjct: 129 RCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 185
>pdb|1DCC|A Chain A, 2.2 Angstrom Structure Of Oxyperoxidase: A Model For The
Enzyme:peroxide Complex
pdb|3CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 74 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 128
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAH +G+T +
Sbjct: 129 RCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 185
>pdb|2RBU|X Chain X, Cytochrome C Peroxidase In Complex With
Cyclopentane-Carboximidamide
pdb|2RBV|X Chain X, Cytochrome C Peroxidase In Complex With
(1-Methyl-1h-Pyrrol-2-Yl)- Methylamine
pdb|2RBW|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1,2-dimethyl-1h-pyridin- 5-amine
pdb|2RBY|X Chain X, 1-methyl-5-imidazolecarboxaldehyde In Complex With
Cytochrome C Peroxidase W191g
pdb|2RBZ|X Chain X, Cytochrome C Peroxidase W191g In Complex 3-Methoxypyridine
pdb|2RC0|X Chain X, Cytochrome C Peroxidase W191g In Complex With 2-Imino-4-
Methylpiperdine
pdb|2RC2|X Chain X, Cytochrome C Peroxidase W191g In Complex With
1-Methyl-2-Vinyl- Pyridinium
pdb|2RBT|X Chain X, N-Methylbenzylamine In Complex With Cytochrome C
Peroxidase W191g
pdb|2RBX|X Chain X, Cytochrome C Peroxidase W191g In Complex With
Pyrimidine-2,4,6- Triamine.
pdb|2RC1|X Chain X, Cytochrome C Peroxidase W191g In Complex With
2,4,5-Trimethyl-3- Oxazoline
Length = 292
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 70 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 124
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAH +G+T +
Sbjct: 125 RCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 181
>pdb|2V2E|A Chain A, Structure Of Isoniazid (Inh) Bound To Cytochrome C
Peroxidase Mutant N184r Y36a
Length = 294
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 72 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 126
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAH +G+T +
Sbjct: 127 RCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLK 183
>pdb|2V23|A Chain A, Structure Of Cytochrome C Peroxidase Mutant N184r Y36a
pdb|4A6Z|A Chain A, Cytochrome C Peroxidase With Bound Guaiacol
Length = 296
Score = 35.0 bits (79), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 74 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 128
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAH +G+T +
Sbjct: 129 RCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLK 185
>pdb|1A2G|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 35.0 bits (79), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 69 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 123
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAH +G+T +
Sbjct: 124 RCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 180
>pdb|1EBE|A Chain A, Laue Diffraction Study On The Structure Of Cytochrome C
Peroxidase Compound I
Length = 294
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 72 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 126
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAH +G+T +
Sbjct: 127 RCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLK 183
>pdb|2AQD|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,5-
Diaminopyridine
pdb|2AS1|A Chain A, Cytochrome C Peroxidase In Complex With Thiopheneamidine
pdb|2AS2|A Chain A, Cytochrome C Peroxidase In Complex With 2-Iminopiperidine
pdb|2AS3|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
pdb|2AS4|A Chain A, Cytochrome C Peroxidase In Complex With 3-Fluorocatechol
pdb|2AS6|A Chain A, Cytochrome C Peroxidase In Complex With Cyclopentylamine
pdb|2EUN|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2,4-
Diaminopyrimidine
pdb|2EUO|A Chain A, Cytochrome C Peroxidase (ccp) In Complex With 1-methyl-1-
Lambda-5-pyridin-3-yl-amine
pdb|2EUP|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-5-
Picoline
pdb|2EUQ|A Chain A, Cytochrome C Peroxydase (Ccp) In Complex With 3-
Thienylmethylamine
pdb|2EUR|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 4-
Pyridylcarbinol
pdb|2EUS|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With Benzylamine
pdb|2EUT|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With 2-Amino-4-
Picoline
pdb|2EUU|A Chain A, Cytochrome C Peroxidase (Ccp) In Complex With
1h-Imidazol-2- Ylmethanol
pdb|1AA4|A Chain A, Specificity Of Ligand Binding In A Buried Polar Cavity Of
Cytochrome C Peroxidase
pdb|1CMP|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMQ|A Chain A, Small Molecule Binding To An Artificially Created Cavity
At The Active Site Of Cytochrome C Peroxidase
pdb|1CMT|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
pdb|1RYC|A Chain A, Cytochrome C Peroxidase W191g From Saccharomyces
Cerevisiae
pdb|2Y5A|A Chain A, Cytochrome C Peroxidase (Ccp) W191g Bound To
3-Aminopyridine
Length = 294
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 72 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 126
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAH +G+T +
Sbjct: 127 RCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 183
>pdb|1BVA|A Chain A, Manganese Binding Mutant In Cytochrome C Peroxidase
Length = 294
Score = 35.0 bits (79), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 72 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 126
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAH +G+T +
Sbjct: 127 RCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 183
>pdb|1CMU|A Chain A, The Role Of Aspartate-235 In The Binding Of Cations To An
Artificial Cavity At The Radical Site Of Cytochrome C
Peroxidase
Length = 294
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 72 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 126
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAH +G+T +
Sbjct: 127 RCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 183
>pdb|3E2N|A Chain A, Engineering Ascorbate Peroxidase Activity Into Cytochrome
C Peroxidase
Length = 287
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 65 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 119
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAH +G+T +
Sbjct: 120 RCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLK 176
>pdb|1CPD|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPE|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
pdb|1CPF|A Chain A, A Cation Binding Motif Stabilizes The Compound I Radical
Of Cytochrome C Peroxidase
Length = 296
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 74 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 128
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAH +G+T +
Sbjct: 129 RCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 185
>pdb|4A71|A Chain A, Cytochrome C Peroxidase In Complex With Phenol
Length = 296
Score = 35.0 bits (79), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 74 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 128
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAH +G+T +
Sbjct: 129 RCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLK 185
>pdb|1CCL|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 69 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 123
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAH +G+T +
Sbjct: 124 RCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 180
>pdb|1BEP|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
pdb|1BJ9|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 69 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 123
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAH +G+T +
Sbjct: 124 RCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 180
>pdb|2CEP|A Chain A, Role Of Met-230 In Intramolecular Electron Transfer
Between The Oxyferryl Heme And Trp 191 In Cytochrome C
Peroxidase Compound Ii
Length = 296
Score = 35.0 bits (79), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 74 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 128
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAH +G+T +
Sbjct: 129 RCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 185
>pdb|1CCA|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 75 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 129
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAH +G+T +
Sbjct: 130 RCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 186
>pdb|2IA8|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
pdb|2ICV|A Chain A, Kinetic And Crystallographic Studies Of A Redesigned
Manganese-Binding Site In Cytochrome C Peroxidase
Length = 291
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 69 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 123
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAH +G+T +
Sbjct: 124 RCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTELK 180
>pdb|2GB8|A Chain A, Solution Structure Of The Complex Between Yeast Iso-1-
Cytochrome C And Yeast Cytochrome C Peroxidase
pdb|2JTI|A Chain A, Solution Structure Of The Yeast Iso-1-Cytochrome C (T12a)
: Yeast Cytochrome C Peroxidase Complex
Length = 294
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 72 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 126
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAH +G+T +
Sbjct: 127 RCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 183
>pdb|2PCB|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCB|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|A Chain A, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|2PCC|C Chain C, Crystal Structure Of A Complex Between Electron Transfer
Partners, Cytochrome C Peroxidase And Cytochrome C
pdb|1U74|A Chain A, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U74|C Chain C, Electron Transfer Complex Between Cytochrome C And
Cytochrome C Peroxidase
pdb|1U75|A Chain A, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|1U75|C Chain C, Electron Transfer Complex Between Horse Heart Cytochrome C
And Zinc- Porphyrin Substituted Cytochrome C Peroxidase
pdb|2BCN|A Chain A, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|2BCN|C Chain C, Solvent Isotope Effects On Interfacial Protein Electron
Transfer Between Cytochrome C And Cytochrome C
Peroxidase
pdb|1CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 35.0 bits (79), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 74 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 128
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAH +G+T +
Sbjct: 129 RCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 185
>pdb|2CCP|A Chain A, X-Ray Structures Of Recombinant Yeast Cytochrome C
Peroxidase And Three Heme-Cleft Mutants Prepared By
Site-Directed Mutagenesis
Length = 296
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 74 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 128
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAH +G+T +
Sbjct: 129 RCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 185
>pdb|1DJ1|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase
pdb|1DJ5|A Chain A, Crystal Structure Of R48a Mutant Of Cytochrome C
Peroxidase With N-Hydroxyguanidine Bound
Length = 291
Score = 35.0 bits (79), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 69 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 123
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAH +G+T +
Sbjct: 124 RCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 180
>pdb|1CCI|A Chain A, How Flexible Are Proteins? Trapping Of A Flexible Loop
pdb|1CCJ|A Chain A, Conformer Selection By Ligand Binding Observed With
Protein Crystallography
Length = 294
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 72 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 126
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAH +G+T +
Sbjct: 127 RCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 183
>pdb|7CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 74 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 128
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAH +G+T +
Sbjct: 129 RCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 185
>pdb|1BEK|A Chain A, Effect Of Unnatural Heme Substitution On Kinetics Of
Electron Transfer In Cytochrome C Peroxidase
Length = 291
Score = 35.0 bits (79), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 69 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 123
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAH +G+T +
Sbjct: 124 RCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 180
>pdb|6CCP|A Chain A, Effect Of Arginine-48 Replacement On The Reaction Between
Cytochrome C Peroxidase And Hydrogen Peroxide
Length = 296
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 74 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 128
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAH +G+T +
Sbjct: 129 RCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 185
>pdb|1CCB|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 35.0 bits (79), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 75 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 129
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAH +G+T +
Sbjct: 130 RCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 186
>pdb|1CCC|A Chain A, The Asp-His-Fe Triad Of Cytochrome C Peroxidase Controls
The Reduction Potential, Electronic Structure, And
Coupling Of The Tryptophan Free-Radical To The Heme
Length = 297
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 75 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 129
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAH +G+T +
Sbjct: 130 RCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 186
>pdb|5CCP|A Chain A, Histidine 52 Is A Critical Residue For Rapid Formation Of
Cytochrome C Peroxidase Compound I
Length = 296
Score = 35.0 bits (79), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 74 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 128
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAH +G+T +
Sbjct: 129 RCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 185
>pdb|4A7M|A Chain A, Cytochrome C Peroxidase S81w Mutant
Length = 296
Score = 34.7 bits (78), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 74 RFKKEFNDPWNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 128
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAH +G+T +
Sbjct: 129 RCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLK 185
>pdb|4A78|A Chain A, Cytochrome C Peroxidase M119w In Complex With Guiacol
Length = 296
Score = 34.7 bits (78), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 74 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEWQGPKIPW 128
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAH +G+T +
Sbjct: 129 RCGRVDTPEDTTPDNGRLPDADKDADYVRTFFQRLNMNDREVVALMGAHALGKTHLK 185
>pdb|3CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 34.3 bits (77), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 72 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 126
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAH +G+T +
Sbjct: 127 RCGRVDTPEDTTPDNGRLPDYDKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 183
>pdb|4CCX|A Chain A, Altering Substrate Specificity At The Heme Edge Of
Cytochrome C Peroxidase
Length = 294
Score = 34.3 bits (77), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 49/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 72 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 126
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GAH +G+T +
Sbjct: 127 RCGRVDTPEDTTPDNGRLPDMDKDAGYVRTFFQRLNMNDREVVALMGAHALGKTHLK 183
>pdb|1A2F|A Chain A, Probing The Strength And Character Of An Asp-His-X
Hydrogen Bond By Introducing Buried Charges
Length = 291
Score = 33.1 bits (74), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 48/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 69 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 123
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L GAH +G+T +
Sbjct: 124 RCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALKGAHALGKTHLK 180
>pdb|3QML|C Chain C, The Structural Analysis Of Sil1-Bip Complex Reveals The
Mechanism For Sil1 To Function As A Novel Nucleotide
Exchange Factor
pdb|3QML|D Chain D, The Structural Analysis Of Sil1-Bip Complex Reveals The
Mechanism For Sil1 To Function As A Novel Nucleotide
Exchange Factor
Length = 315
Score = 32.3 bits (72), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Query: 175 SWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCRYIVDRLYNYKNTGKPDPSMNTTLLNR 234
+W +L Q + Q+MV ++ + R D LYN K K D ++N LN
Sbjct: 209 NWSSNL---QEWANEFQEMVQ---NKSIDELHTRTFFDTLYNLKKIFKSDITINKGFLNW 262
Query: 235 LRKECPPR 242
L ++C R
Sbjct: 263 LAQQCKAR 270
>pdb|2RSL|A Chain A, Refinement Of Gamma Delta Resolvase Reveals A Strikingly
Flexible Molecule
pdb|2RSL|B Chain B, Refinement Of Gamma Delta Resolvase Reveals A Strikingly
Flexible Molecule
pdb|2RSL|C Chain C, Refinement Of Gamma Delta Resolvase Reveals A Strikingly
Flexible Molecule
pdb|1GDR|A Chain A, Model For A Dna Mediated Synaptic Complex Suggested By
Crystal Packing Of Gamma Delta Resolvase Subunits
Length = 140
Score = 32.0 bits (71), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 3/120 (2%)
Query: 134 LNLATRDAVHMAGAPSYPVFTGRRDGMTSTKESVDLPSPSISWKESLAC--FQSKGLDVQ 191
L++ R A+ AG + +FT + G +S ++ +DL + + + G D
Sbjct: 16 LDIQVR-ALKDAGVKANRIFTDKASGSSSDRKGLDLLRMKVEEGDVILVKKLDRLGRDTA 74
Query: 192 DMVTLLGAHTMGQTRCRYIVDRLYNYKNTGKPDPSMNTTLLNRLRKECPPRTRKGQSDPL 251
DM+ L+ R+I D + GK ++ + + R+ RT +G+ + +
Sbjct: 75 DMIQLIKEFDAQGVSIRFIDDGISTDGEMGKMVVTILSAVAQAERQRILERTNEGRQEAM 134
>pdb|1ZR2|A Chain A, Structure Of A Synaptic Gamma-Delta Resolvase Tetramer
Covalently Linked To Two Cleaved Dnas
pdb|1ZR2|B Chain B, Structure Of A Synaptic Gamma-Delta Resolvase Tetramer
Covalently Linked To Two Cleaved Dnas
pdb|1ZR4|A Chain A, Structure Of A Synaptic Gamma-Delta Resolvase Tetramer
Covalently Linked To Two Cleaved Dnas
pdb|1ZR4|B Chain B, Structure Of A Synaptic Gamma-Delta Resolvase Tetramer
Covalently Linked To Two Cleaved Dnas
pdb|1ZR4|E Chain E, Structure Of A Synaptic Gamma-Delta Resolvase Tetramer
Covalently Linked To Two Cleaved Dnas
pdb|1ZR4|D Chain D, Structure Of A Synaptic Gamma-Delta Resolvase Tetramer
Covalently Linked To Two Cleaved Dnas
Length = 183
Score = 31.6 bits (70), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 7/122 (5%)
Query: 134 LNLATRDAVHMAGAPSYPVFTGRRDGMTSTKESVDLPSPSISWKESLACFQSK----GLD 189
L++ R A+ AG + +FT + G +S ++ +DL + KE K G D
Sbjct: 16 LDIQVR-ALKDAGVKANRIFTDKASGSSSDRKGLDLLRMKV--KEGDVILVKKLDRLGRD 72
Query: 190 VQDMVTLLGAHTMGQTRCRYIVDRLYNYKNTGKPDPSMNTTLLNRLRKECPPRTRKGQSD 249
DM+ L+ R+I D + GK ++ + + R+ RT +G+ +
Sbjct: 73 TADMIQLIKEFDAQGVSIRFIDDGISTDSYIGKMVVTILSAVAQAERQRILQRTNEGRQE 132
Query: 250 PL 251
+
Sbjct: 133 AM 134
>pdb|1GDT|A Chain A, Crystal Structure Of A Site-Specific Recombinase, Gamma-
Delta Resolvase Complexed With A 34 Bp Cleavage Site
pdb|1GDT|B Chain B, Crystal Structure Of A Site-Specific Recombinase, Gamma-
Delta Resolvase Complexed With A 34 Bp Cleavage Site
Length = 183
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 51/120 (42%), Gaps = 3/120 (2%)
Query: 134 LNLATRDAVHMAGAPSYPVFTGRRDGMTSTKESVDLPSPSISWKESLAC--FQSKGLDVQ 191
L++ R A+ AG + +FT + G +S ++ +DL + + + G D
Sbjct: 16 LDIQVR-ALKDAGVKANRIFTDKASGSSSDRKGLDLLRMKVEEGDVILVKKLDRLGRDTA 74
Query: 192 DMVTLLGAHTMGQTRCRYIVDRLYNYKNTGKPDPSMNTTLLNRLRKECPPRTRKGQSDPL 251
DM+ L+ R+I D + GK ++ + + R+ RT +G+ + +
Sbjct: 75 DMIQLIKEFDAQGVSIRFIDDGISTDGEMGKMVVTILSAVAQAERQRILERTNEGRQEAM 134
>pdb|2GM4|A Chain A, An Activated, Tetrameric Gamma-Delta Resolvase: Hin
Chimaera Bound To Cleaved Dna
pdb|2GM4|B Chain B, An Activated, Tetrameric Gamma-Delta Resolvase: Hin
Chimaera Bound To Cleaved Dna
Length = 183
Score = 31.2 bits (69), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 7/122 (5%)
Query: 134 LNLATRDAVHMAGAPSYPVFTGRRDGMTSTKESVDLPSPSISWKESLACFQSK----GLD 189
L++ R A+ AG + +FT + G +S ++ +DL + KE K G D
Sbjct: 16 LDIQVR-ALKDAGVKANRIFTDKASGSSSDRKGLDLLRMKV--KEGDVILVKKLDRLGRD 72
Query: 190 VQDMVTLLGAHTMGQTRCRYIVDRLYNYKNTGKPDPSMNTTLLNRLRKECPPRTRKGQSD 249
DM+ L+ R+I D + G+ ++ + + R+ RT +G+ +
Sbjct: 73 TADMIQLIKEFDAQGVSIRFIDDSIDTSSAMGRMVVTILSAVAQAERQRILQRTNEGRQE 132
Query: 250 PL 251
+
Sbjct: 133 AM 134
>pdb|1CCE|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
pdb|1CCG|A Chain A, Construction Of A Bis-Aquo Heme Enzyme And Replacement
With Exogenous Ligand
Length = 291
Score = 31.2 bits (69), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 69 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 123
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GA +G+T +
Sbjct: 124 RCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAGALGKTHLK 180
>pdb|1DS4|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
Ph 6, 100k
pdb|1DSG|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 5, Room Temperature.
pdb|1DSO|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 6, Room Temperature.
pdb|1DSP|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex At
Ph 7, Room Temperature
Length = 292
Score = 31.2 bits (69), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 7/117 (5%)
Query: 94 RPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPV 152
R E P N GL F ++ I + P +S D+ +L AV P P
Sbjct: 70 RFKKEFNDPSNAGLQNGFKFLEPI----HKEFP-WISSGDLFSLGGVTAVQEMQGPKIPW 124
Query: 153 FTGRRDG-MTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCR 208
GR D +T ++ LP FQ ++ +++V L+GA +G+T +
Sbjct: 125 RCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRLNMNDREVVALMGAGALGKTHLK 181
>pdb|1DSE|A Chain A, Cytochrome C Peroxidase H175g Mutant, Imidazole Complex,
With Phosphate Bound, Ph 6, 100k
Length = 292
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 128 VSCSDILNLATRDAVHMAGAPSYPVFTGRRDG-MTSTKESVDLPSPSISWKESLACFQSK 186
+S D+ +L AV P P GR D +T ++ LP FQ
Sbjct: 100 ISSGDLFSLGGVTAVQEMQGPKIPWRCGRVDTPEDTTPDNGRLPDADKDAGYVRTFFQRL 159
Query: 187 GLDVQDMVTLLGAHTMGQTRCR 208
++ +++V L+GA +G+T +
Sbjct: 160 NMNDREVVALMGAGALGKTHLK 181
>pdb|2GM5|A Chain A, An Activated, Truncated Gamma-Delta Resolvase Tetramer
pdb|2GM5|B Chain B, An Activated, Truncated Gamma-Delta Resolvase Tetramer
pdb|2GM5|C Chain C, An Activated, Truncated Gamma-Delta Resolvase Tetramer
pdb|2GM5|D Chain D, An Activated, Truncated Gamma-Delta Resolvase Tetramer
Length = 139
Score = 30.0 bits (66), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 51/122 (41%), Gaps = 7/122 (5%)
Query: 134 LNLATRDAVHMAGAPSYPVFTGRRDGMTSTKESVDLPSPSISWKESLACFQSK----GLD 189
L++ R A+ AG + +FT + G +S ++ +DL + KE K G D
Sbjct: 15 LDIQVR-ALKDAGVKANRIFTDKASGSSSDRKGLDLLRXKV--KEGDVILVKKLDHLGRD 71
Query: 190 VQDMVTLLGAHTMGQTRCRYIVDRLYNYKNTGKPDPSMNTTLLNRLRKECPPRTRKGQSD 249
D + L+ R+I D + GK ++ + + R+ RT +G+ +
Sbjct: 72 TADXIQLIKEFDAQGVSIRFIDDGISTDSYIGKXVVTILSAVAQAERQRILERTNEGRQE 131
Query: 250 PL 251
+
Sbjct: 132 AM 133
>pdb|1X54|A Chain A, Crystal Structure Of Asparaginyl-trna Synthetase From
Pyrococcus Horikoshii Complexed With
Asparaginyl-adenylate
pdb|1X55|A Chain A, Crystal Structure Of Asparaginyl-Trna Synthetase From
Pyrococcus Horikoshii Complexed With
Asparaginyl-Adenylate Analogue
pdb|1X56|A Chain A, Crystal Structure Of Asparaginyl-Trna Synthetase From
Pyrococcus Horikoshii
Length = 434
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 157 RDGMTSTKESVDLPSPSISWKESLACFQSKGLDVQ 191
RD +T+ K + + P P IS+ E++ QSKG++V+
Sbjct: 266 RDDLTTLK-NTEPPFPRISYDEAIDILQSKGVNVE 299
>pdb|1LY8|A Chain A, The Crystal Structure Of A Mutant Enzyme Of Coprinus
Cinereus Peroxidase Provides An Understanding Of Its
Increased Thermostability And Insight Into Modelling Of
Protein Structures
pdb|1LY8|B Chain B, The Crystal Structure Of A Mutant Enzyme Of Coprinus
Cinereus Peroxidase Provides An Understanding Of Its
Increased Thermostability And Insight Into Modelling Of
Protein Structures
Length = 343
Score = 28.9 bits (63), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 11/115 (9%)
Query: 91 LLDRPNSEKTAPQNWGLGAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSY 150
++ N E P N GL D ++ + VS D++ A AV M+ P
Sbjct: 79 IIAHSNIELAFPANGGL-----TDTVEALRAVGINHGVSFGDLIQFAA--AVGMSNCPGS 131
Query: 151 P---VFTGRRDGMTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTM 202
P TGR + + S+ +P P + L F G ++V LL AH++
Sbjct: 132 PRLEFLTGRSNSSQPSPPSL-IPGPGNTVTAILDRFGDAGFSPDEVVDLLAAHSL 185
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,639,232
Number of Sequences: 62578
Number of extensions: 379991
Number of successful extensions: 1025
Number of sequences better than 100.0: 104
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 79
Number of HSP's that attempted gapping in prelim test: 924
Number of HSP's gapped (non-prelim): 104
length of query: 345
length of database: 14,973,337
effective HSP length: 100
effective length of query: 245
effective length of database: 8,715,537
effective search space: 2135306565
effective search space used: 2135306565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)