Query 045265
Match_columns 345
No_of_seqs 187 out of 1464
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 11:31:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045265.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045265hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03030 cationic peroxidase; 100.0 6E-107 1E-111 781.4 25.8 299 32-338 20-324 (324)
2 cd00693 secretory_peroxidase H 100.0 1.6E-99 4E-104 727.8 25.6 294 36-337 1-298 (298)
3 PF00141 peroxidase: Peroxidas 100.0 1.5E-71 3.2E-76 517.4 9.0 227 55-302 1-230 (230)
4 PLN02608 L-ascorbate peroxidas 100.0 1E-69 2.3E-74 516.4 20.6 233 50-335 13-257 (289)
5 PLN02364 L-ascorbate peroxidas 100.0 7.2E-66 1.6E-70 483.2 19.0 233 39-323 3-248 (250)
6 cd00691 ascorbate_peroxidase A 100.0 1.3E-65 2.7E-70 483.0 19.2 225 49-324 10-252 (253)
7 cd00692 ligninase Ligninase an 100.0 2.7E-65 5.8E-70 494.1 21.7 243 46-341 12-290 (328)
8 PLN02879 L-ascorbate peroxidas 100.0 7.1E-64 1.5E-68 469.1 20.0 219 53-323 18-248 (251)
9 cd00314 plant_peroxidase_like 100.0 2.3E-58 5E-63 434.4 17.8 220 54-319 2-255 (255)
10 cd00649 catalase_peroxidase_1 100.0 1.7E-56 3.6E-61 439.5 20.1 257 53-328 45-401 (409)
11 TIGR00198 cat_per_HPI catalase 100.0 4.3E-54 9.3E-59 446.4 20.9 256 53-325 55-405 (716)
12 PRK15061 catalase/hydroperoxid 100.0 2.7E-50 5.9E-55 415.9 20.3 257 53-328 57-414 (726)
13 cd08201 plant_peroxidase_like_ 100.0 3.2E-51 6.9E-56 383.6 10.1 219 55-319 27-264 (264)
14 cd08200 catalase_peroxidase_2 100.0 2.4E-39 5.3E-44 307.0 16.5 218 57-321 17-296 (297)
15 TIGR00198 cat_per_HPI catalase 100.0 9E-34 2E-38 295.0 15.6 213 59-321 437-709 (716)
16 PRK15061 catalase/hydroperoxid 100.0 1.6E-33 3.4E-38 291.8 16.8 218 57-321 442-721 (726)
17 COG0376 KatG Catalase (peroxid 100.0 2E-31 4.4E-36 265.0 18.3 238 68-321 93-416 (730)
18 COG0376 KatG Catalase (peroxid 99.4 2.5E-12 5.5E-17 129.5 12.0 213 58-321 453-725 (730)
19 PTZ00411 transaldolase-like pr 72.9 33 0.00071 34.1 10.2 63 128-190 161-230 (333)
20 PRK12309 transaldolase/EF-hand 69.6 38 0.00082 34.4 10.0 63 128-190 155-224 (391)
21 TIGR00874 talAB transaldolase. 63.0 55 0.0012 32.3 9.4 64 128-191 149-219 (317)
22 PRK12346 transaldolase A; Prov 58.3 49 0.0011 32.7 8.2 64 128-191 150-220 (316)
23 PF11895 DUF3415: Domain of un 49.4 15 0.00032 29.0 2.4 18 305-322 2-19 (80)
24 PRK05269 transaldolase B; Prov 42.9 1.4E+02 0.0031 29.5 8.7 64 128-191 151-221 (318)
25 PF07172 GRP: Glycine rich pro 30.4 79 0.0017 25.6 3.9 8 1-8 1-8 (95)
26 KOG0400 40S ribosomal protein 29.1 28 0.00061 30.1 1.1 33 174-206 31-64 (151)
27 PF06163 DUF977: Bacterial pro 29.0 73 0.0016 27.4 3.6 23 178-200 16-39 (127)
28 PF14919 MTBP_mid: MDM2-bindin 24.1 1.1E+02 0.0025 30.3 4.4 70 99-196 264-333 (342)
29 cd00957 Transaldolase_TalAB Tr 23.0 67 0.0015 31.7 2.6 66 128-193 149-221 (313)
30 PRK01844 hypothetical protein; 22.2 1.7E+02 0.0036 22.8 4.1 27 55-81 25-51 (72)
31 PF08782 c-SKI_SMAD_bind: c-SK 20.4 32 0.00069 28.2 -0.1 15 77-92 4-18 (96)
No 1
>PLN03030 cationic peroxidase; Provisional
Probab=100.00 E-value=6.3e-107 Score=781.39 Aligned_cols=299 Identities=41% Similarity=0.681 Sum_probs=284.7
Q ss_pred CCCCCCCccccCCCCCChhHHHHHHHHHHHHHhcCCCccchhhhhhhccccCCCCCceeeccCCCcccCCCCCCCCchhH
Q 045265 32 PQPVKLEWHYYKVHNTCDDAEAYIRHQVELFYKHDKTIAPKLLRLLYSDCFVTGCDASILLDRPNSEKTAPQNWGLGAFV 111 (345)
Q Consensus 32 ~~~~~l~~~fY~~~~sCp~~e~iV~~~v~~~~~~d~~~a~~llRL~FHDcfv~GcDgSill~~~~~E~~~~~N~~l~g~~ 111 (345)
++.++|+++||+ +|||++|+||+++|++.+.+|++++|++|||+||||||+||||||||+++..||++++|.+|+||+
T Consensus 20 ~~~~~L~~~fY~--~sCP~aE~iV~~~v~~~~~~d~~~aa~llRL~FHDCfv~GCDaSvLl~~~~~Ek~a~~N~~l~Gf~ 97 (324)
T PLN03030 20 VQGQGTRVGFYS--TTCPQAESIVRKTVQSHFQSNPAIAPGLLRMHFHDCFVRGCDASILIDGSNTEKTALPNLLLRGYD 97 (324)
T ss_pred chhccCccchhh--CcCCCHHHHHHHHHHHHHhhCcccchhhhhhhhhhheecCCceEEeeCCCcccccCCCCcCcchHH
Confidence 455679999999 999999999999999999999999999999999999999999999999766899999999999999
Q ss_pred HHHHHHHHHHhhCCCCCchhhHHhhhchhhhhcCCCCcccccCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHCCCCc
Q 045265 112 LIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPVFTGRRDGMTSTKESV-DLPSPSISWKESLACFQSKGLDV 190 (345)
Q Consensus 112 ~I~~iK~~le~~cp~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~-~lP~p~~~~~~l~~~F~~~Glt~ 190 (345)
+|+.||++||++||++|||||||||||||||+++|||.|+|++||||+++|.+.++ +||.|+.++++|++.|+++||+.
T Consensus 98 ~i~~iK~~~e~~CPg~VSCADilalAarDaV~~~gGP~~~v~~GRrDg~~s~~~~~~~LP~p~~~~~~l~~~F~~~Gl~~ 177 (324)
T PLN03030 98 VIDDAKTQLEAACPGVVSCADILALAARDSVVLTNGLTWPVPTGRRDGRVSLASDASNLPGFTDSIDVQKQKFAAKGLNT 177 (324)
T ss_pred HHHHHHHHHHhhCCCcccHHHHHHHHhhccccccCCCceeeeccccCCCCCCcccccCCcCCCCCHHHHHHHHHHcCCCH
Confidence 99999999999999999999999999999999999999999999999999887777 89999999999999999999999
Q ss_pred cchhhhcccccccccccccccccccccCCCC-CCCCCCCHHHHHHHhccCCCCCCCCCCCCcccCCCCCCCCcccchHHH
Q 045265 191 QDMVTLLGAHTMGQTRCRYIVDRLYNYKNTG-KPDPSMNTTLLNRLRKECPPRTRKGQSDPLVYLNPETGSSYRFSESYY 269 (345)
Q Consensus 191 ~elVaLsGaHTiG~ahc~~f~~Rl~~f~g~~-~~dp~~d~~y~~~L~~~Cp~~~~~~~~~~~~~~~lD~~tp~~FDn~Yy 269 (345)
+|||+||||||||++||.+|.+|||||.+++ .+||+|||.|++.|++.||..+ +++ ..+++|+.||.+|||+||
T Consensus 178 ~DlVaLsGAHTiG~ahC~~f~~Rlynf~~~~~~~Dp~~d~~~~~~L~~~Cp~~~--~~~---~~~~lD~~Tp~~FDn~Yy 252 (324)
T PLN03030 178 QDLVTLVGGHTIGTTACQFFRYRLYNFTTTGNGADPSIDASFVPQLQALCPQNG--DGS---RRIALDTGSSNRFDASFF 252 (324)
T ss_pred HHheeeeeccccceeeeeccccccccccCCCCCCCCchhHHHHHHHhccCCCCC--CCC---ccccCCCCCCcccccHHH
Confidence 9999999999999999999999999999875 5899999999999999999633 222 357899999999999999
Q ss_pred HHhhccccccchhhhhccCCcchHHHHHHHhhCH----HHHHHHHHHHHHHhhcCCCCCCCCCcccccccccC
Q 045265 270 SRVKTHEAVLGVDQQLSNGDNNTLQIVDEFAAGF----EDFRKALALSMSRMGSINVLTGKQGEIRRNCRCTN 338 (345)
Q Consensus 270 ~~l~~~~glL~SD~~L~~~d~~t~~~V~~yA~d~----~~F~~~Fa~Am~Km~~lgv~tG~~GeIR~~C~~~n 338 (345)
+||++++|+|+|||+|+ .|++|+++|++||.|+ +.|+++|++||+|||+|+|+||.+|||||+|+++|
T Consensus 253 ~nll~~rGlL~SDq~L~-~d~~T~~~V~~~A~~~~~~~~~F~~~Fa~AmvKMg~i~VlTG~~GEIRk~C~~vN 324 (324)
T PLN03030 253 SNLKNGRGILESDQKLW-TDASTRTFVQRFLGVRGLAGLNFNVEFGRSMVKMSNIGVKTGTNGEIRKVCSAIN 324 (324)
T ss_pred HHHHhcCCCcCCchHhh-cCccHHHHHHHHhcccccchhhhHHHHHHHHHHHccCCCCCCCCCceeccccccC
Confidence 99999999999999999 9999999999999875 59999999999999999999999999999999998
No 2
>cd00693 secretory_peroxidase Horseradish peroxidase and related secretory plant peroxidases. Secretory peroxidases belong to class III of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class III peroxidases are found in the extracellular space or in the vacuole in plants where they have been implicated in hydrogen peroxide detoxification, auxin catabolism and lignin biosynthesis, and stress response. Class III peroxidases contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=1.6e-99 Score=727.77 Aligned_cols=294 Identities=46% Similarity=0.796 Sum_probs=283.1
Q ss_pred CCCccccCCCCCChhHHHHHHHHHHHHHhcCCCccchhhhhhhccccCCCCCceeeccCCC---cccCCCCCCCCchhHH
Q 045265 36 KLEWHYYKVHNTCDDAEAYIRHQVELFYKHDKTIAPKLLRLLYSDCFVTGCDASILLDRPN---SEKTAPQNWGLGAFVL 112 (345)
Q Consensus 36 ~l~~~fY~~~~sCp~~e~iV~~~v~~~~~~d~~~a~~llRL~FHDcfv~GcDgSill~~~~---~E~~~~~N~~l~g~~~ 112 (345)
||+++||+ ++||++|+||+++|++.+.+|++++|++|||+||||||+||||||||+++. +|+++++|.+|+||++
T Consensus 1 ~L~~~~Y~--~sCP~~e~iV~~~v~~~~~~~~~~a~~~lRl~FHDc~v~GcDaSill~~~~~~~~E~~~~~N~~l~g~~~ 78 (298)
T cd00693 1 QLSVGFYS--KSCPNAESIVRSVVRAAVKADPRLAAALLRLHFHDCFVRGCDASVLLDSTANNTSEKDAPPNLSLRGFDV 78 (298)
T ss_pred CCCccccc--CCCCChHHHHHHHHHHHHHhCCCcCchhhhhhhHhhhccCcceeEEecCCCCCchhccCCCCCCcchhHH
Confidence 59999999 999999999999999999999999999999999999999999999999752 8999999999999999
Q ss_pred HHHHHHHHHhhCCCCCchhhHHhhhchhhhhcCCCCcccccCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHCCCCcc
Q 045265 113 IDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPVFTGRRDGMTSTKESV-DLPSPSISWKESLACFQSKGLDVQ 191 (345)
Q Consensus 113 I~~iK~~le~~cp~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~-~lP~p~~~~~~l~~~F~~~Glt~~ 191 (345)
|++||++||+.||++||||||||||||+||+++|||.|+|++||+|+.++.+..+ +||.|+.+++++++.|+++||+++
T Consensus 79 i~~iK~~~e~~cp~~VScADiialAar~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~G~~~~ 158 (298)
T cd00693 79 IDDIKAALEAACPGVVSCADILALAARDAVVLAGGPSYEVPLGRRDGRVSSANDVGNLPSPFFSVSQLISLFASKGLTVT 158 (298)
T ss_pred HHHHHHHHHhhCCCcccHHHHHHHhhhhceeccCCCcccccCCCcCCcccCcccccCCCCcccCHHHHHHHHHHcCCCHH
Confidence 9999999999999999999999999999999999999999999999998877766 899999999999999999999999
Q ss_pred chhhhcccccccccccccccccccccCCCCCCCCCCCHHHHHHHhccCCCCCCCCCCCCcccCCCCCCCCcccchHHHHH
Q 045265 192 DMVTLLGAHTMGQTRCRYIVDRLYNYKNTGKPDPSMNTTLLNRLRKECPPRTRKGQSDPLVYLNPETGSSYRFSESYYSR 271 (345)
Q Consensus 192 elVaLsGaHTiG~ahc~~f~~Rl~~f~g~~~~dp~~d~~y~~~L~~~Cp~~~~~~~~~~~~~~~lD~~tp~~FDn~Yy~~ 271 (345)
|||+|+||||||++||.+|.+|||||+|++.+||+||+.|+..|++.||..+ +++ ..++||+.||.+|||+||+|
T Consensus 159 d~VaL~GaHTiG~~hc~~f~~Rl~~f~g~~~~dp~~~~~~~~~L~~~Cp~~~--~~~---~~~~lD~~Tp~~FDn~Yy~~ 233 (298)
T cd00693 159 DLVALSGAHTIGRAHCSSFSDRLYNFSGTGDPDPTLDPAYAAQLRKKCPAGG--DDD---TLVPLDPGTPNTFDNSYYKN 233 (298)
T ss_pred HheeecccceeeeeecccccccccCCCCCCCCCCCccHHHHHHhcCCCCCCC--CCC---ccccCCCCCCCccccHHHHH
Confidence 9999999999999999999999999999989999999999999999999654 333 57899999999999999999
Q ss_pred hhccccccchhhhhccCCcchHHHHHHHhhCHHHHHHHHHHHHHHhhcCCCCCCCCCccccccccc
Q 045265 272 VKTHEAVLGVDQQLSNGDNNTLQIVDEFAAGFEDFRKALALSMSRMGSINVLTGKQGEIRRNCRCT 337 (345)
Q Consensus 272 l~~~~glL~SD~~L~~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~tG~~GeIR~~C~~~ 337 (345)
++.++|+|+|||+|+ .|++|+++|++||.||+.|+++|++||+||++|+|+||.+||||++|+++
T Consensus 234 l~~~~glL~SD~~L~-~d~~t~~~V~~~A~d~~~F~~~Fa~Am~Kl~~l~v~tg~~GeiR~~C~~~ 298 (298)
T cd00693 234 LLAGRGLLTSDQALL-SDPRTRAIVNRYAANQDAFFRDFAAAMVKMGNIGVLTGSQGEIRKNCRVV 298 (298)
T ss_pred HHhcccCccCCHHhc-cCccHHHHHHHHhhCHHHHHHHHHHHHHHHhhcCCccCCCCccCCccccC
Confidence 999999999999999 99999999999999999999999999999999999999999999999975
No 3
>PF00141 peroxidase: Peroxidase; InterPro: IPR002016 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Most haem peroxidases follow the reaction scheme: Fe3+ + H2O2 --> [Fe4+=O]R' (Compound I) + H2O [Fe4+=O]R' + substrate --> [Fe4+=O]R (Compound II) + oxidised substrate [Fe4+=O]R + substrate --> Fe3+ + H2O + oxidised substrate In this mechanism, the enzyme reacts with one equivalent of H2O2 to give [Fe4+=O]R' (compound I). This is a two-electron oxidation/reduction reaction where H2O2 is reduced to water and the enzyme is oxidised. One oxidising equivalent resides on iron, giving the oxyferryl [] intermediate, while in many peroxidases the porphyrin (R) is oxidised to the porphyrin pi-cation radical (R'). Compound I then oxidises an organic substrate to give a substrate radical []. Haem peroxidases include two superfamilies: one found in bacteria, fungi, plants and the second found in animals. The first one can be viewed as consisting of 3 major classes []. Class I, the intracellular peroxidases, includes: yeast cytochrome c peroxidase (CCP), a soluble protein found in the mitochondrial electron transport chain, where it probably protects against toxic peroxides; ascorbate peroxidase (AP), the main enzyme responsible for hydrogen peroxide removal in chloroplasts and cytosol of higher plants; and bacterial catalase- peroxidases, exhibiting both peroxidase and catalase activities. It is thought that catalase-peroxidase provides protection to cells under oxidative stress []. Class II consists of secretory fungal peroxidases: ligninases, or lignin peroxidases (LiPs), and manganese-dependent peroxidases (MnPs). These are monomeric glycoproteins involved in the degradation of lignin. In MnP, Mn2+ serves as the reducing substrate []. Class II proteins contain four conserved disulphide bridges and two conserved calcium-binding sites. Class III consists of the secretory plant peroxidases, which have multiple tissue-specific functions: e.g., removal of hydrogen peroxide from chloroplasts and cytosol; oxidation of toxic compounds; biosynthesis of the cell wall; defence responses towards wounding; indole-3-acetic acid (IAA) catabolism; ethylene biosynthesis; and so on. Class III proteins are also monomeric glycoproteins, containing four conserved disulphide bridges and two calcium ions, although the placement of the disulphides differs from class II enzymes. The crystal structures of a number of these proteins show that they share the same architecture - two all-alpha domains between which the haem group is embedded. ; GO: 0004601 peroxidase activity, 0020037 heme binding, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 1QPA_B 2DV2_A 2B2R_B 1MWV_B 2FXJ_A 2FXG_A 2B2O_B 1X7U_B 2B2Q_A 2FXH_A ....
Probab=100.00 E-value=1.5e-71 Score=517.38 Aligned_cols=227 Identities=44% Similarity=0.758 Sum_probs=208.6
Q ss_pred HHHHHHHHHhcCCCccchhhhhhhccccC-CCCCceeeccCCCcccCCCCCCCCc-hhHHHHHHHHHHHhhCCCCCchhh
Q 045265 55 IRHQVELFYKHDKTIAPKLLRLLYSDCFV-TGCDASILLDRPNSEKTAPQNWGLG-AFVLIDKIKVVLEQRCPGAVSCSD 132 (345)
Q Consensus 55 V~~~v~~~~~~d~~~a~~llRL~FHDcfv-~GcDgSill~~~~~E~~~~~N~~l~-g~~~I~~iK~~le~~cp~~VScAD 132 (345)
||+.|++++.++++++|+||||+|||||+ +|||||||+.. .|+++++|.||+ ++++|+.||+++|++||++|||||
T Consensus 1 Vr~~v~~~~~~~~~~~~~~lRl~FHDc~~~~GcDgSil~~~--~e~~~~~N~gl~~~~~~i~~ik~~~~~~cp~~VS~AD 78 (230)
T PF00141_consen 1 VRSDVRAAFKKDPTLAPGLLRLAFHDCFVYGGCDGSILLFS--AEKDAPPNRGLRDGFDVIDPIKAKLEAACPGVVSCAD 78 (230)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHTTHTSSSSGGGGST--TGGGSGGGTTHHHHHHHHHHHHHHHCHHSTTTS-HHH
T ss_pred CHHHHHHHHHHCcCccHHHHHHHccccccccccccceeccc--cccccccccCcceeeechhhHHhhhcccccCCCCHHH
Confidence 79999999999999999999999999999 99999999954 799999999998 999999999999999999999999
Q ss_pred HHhhhchhhhhcCCCCcccccCCCCCCCCCCCCCC-CCCCCCCCHHHHHHHHHHCCCCccchhhhccccccccccccccc
Q 045265 133 ILNLATRDAVHMAGAPSYPVFTGRRDGMTSTKESV-DLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQTRCRYIV 211 (345)
Q Consensus 133 ilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~-~lP~p~~~~~~l~~~F~~~Glt~~elVaLsGaHTiG~ahc~~f~ 211 (345)
||+||||+||+.+|||.|+|++||+|++++.+.++ +||.|+.++++|++.|+++|||++|||||+||||||++||.+|.
T Consensus 79 iialAa~~av~~~GGP~~~v~~GR~D~~~s~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~e~VaLsGaHTiG~~~c~~f~ 158 (230)
T PF00141_consen 79 IIALAARDAVELCGGPRIPVPLGRRDGTVSSPSGASNLPSPTDSVDQLLAFFARKGLSAEEMVALSGAHTIGRAHCSSFS 158 (230)
T ss_dssp HHHHHHHHHHHHTTGGHSHBEB-EBB-SSGGHHHHHHSSTTTSHHHHHHHHHHHTT--HHHHHHHHGGGGSTEESGGCTG
T ss_pred HHHHHhhhcccccccccccccccccccccccccccccccccccccchhhhhhhccccchhhhcceecccccccceecccc
Confidence 99999999999999999999999999999999775 79999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCCCCCCCHHHHHHHhccCCCCCCCCCCCCcccCCCCCCCCcccchHHHHHhhccccccchhhhhccCCcc
Q 045265 212 DRLYNYKNTGKPDPSMNTTLLNRLRKECPPRTRKGQSDPLVYLNPETGSSYRFSESYYSRVKTHEAVLGVDQQLSNGDNN 291 (345)
Q Consensus 212 ~Rl~~f~g~~~~dp~~d~~y~~~L~~~Cp~~~~~~~~~~~~~~~lD~~tp~~FDn~Yy~~l~~~~glL~SD~~L~~~d~~ 291 (345)
||| + .+||+||+.|+.. .| ..+ ++ ..+++| ||.+|||+||+++++++|+|+||++|+ .|++
T Consensus 159 -rl~-~----~~dp~~d~~~~~~---~C-~~~---~~---~~~~~d--tp~~fDN~Yy~~ll~~~gll~SD~~L~-~d~~ 219 (230)
T PF00141_consen 159 -RLY-F----PPDPTMDPGYAGQ---NC-NSG---GD---NGVPLD--TPTVFDNSYYKNLLNGRGLLPSDQALL-NDPE 219 (230)
T ss_dssp -GTS-C----SSGTTSTHHHHHH---SS-STS---GC---TCEESS--STTS-SSHHHHHHHHTEEEEHHHHHHH-HSTT
T ss_pred -ccc-c----cccccccccccee---cc-CCC---cc---cccccc--CCCcchhHHHHHHhcCCCcCHHHHHHh-cCHH
Confidence 999 5 4799999999988 99 333 22 356788 999999999999999999999999999 9999
Q ss_pred hHHHHHHHhhC
Q 045265 292 TLQIVDEFAAG 302 (345)
Q Consensus 292 t~~~V~~yA~d 302 (345)
|+++|++||+|
T Consensus 220 t~~~V~~yA~d 230 (230)
T PF00141_consen 220 TRPIVERYAQD 230 (230)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHhcC
Confidence 99999999976
No 4
>PLN02608 L-ascorbate peroxidase
Probab=100.00 E-value=1e-69 Score=516.45 Aligned_cols=233 Identities=25% Similarity=0.355 Sum_probs=210.5
Q ss_pred hHHHHHHHHHHHHHhcCCCccchhhhhhhcccc-------CCCCCceeeccCCCcccCCCCCCCC-chhHHHHHHHHHHH
Q 045265 50 DAEAYIRHQVELFYKHDKTIAPKLLRLLYSDCF-------VTGCDASILLDRPNSEKTAPQNWGL-GAFVLIDKIKVVLE 121 (345)
Q Consensus 50 ~~e~iV~~~v~~~~~~d~~~a~~llRL~FHDcf-------v~GcDgSill~~~~~E~~~~~N~~l-~g~~~I~~iK~~le 121 (345)
+++.+ ++++ ..+.+|++++|.+|||+||||| ++||||||+++ .|+++++|.|| +||++|+.||+++
T Consensus 13 ~~~~~-~~~~-~~~~~d~~~a~~llRLaFHDc~t~d~~~~~gGcDgSIll~---~E~~~~~N~gL~~g~~vid~iK~~~- 86 (289)
T PLN02608 13 EIEKA-RRDL-RALIASKNCAPIMLRLAWHDAGTYDAKTKTGGPNGSIRNE---EEYSHGANNGLKIAIDLCEPVKAKH- 86 (289)
T ss_pred HHHHH-HHHH-HHHHHCCCcHHHHHHHhhhhcCCcCCCCCCCCCCeeeecc---cccCCccccchHHHHHHHHHHHHHc-
Confidence 35444 4445 4477899999999999999999 89999999997 59999999999 5999999999986
Q ss_pred hhCCCCCchhhHHhhhchhhhhcCCCCcccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCccchhhhccccc
Q 045265 122 QRCPGAVSCSDILNLATRDAVHMAGAPSYPVFTGRRDGMTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHT 201 (345)
Q Consensus 122 ~~cp~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~lP~p~~~~~~l~~~F~~~Glt~~elVaLsGaHT 201 (345)
++|||||||+||||+||+++|||.|+|++||+|++++.+.+ +||+|+.+++++++.|+++|||++|||+|+||||
T Consensus 87 ----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~-~LP~p~~~~~~l~~~F~~~Gl~~~D~VaLsGAHT 161 (289)
T PLN02608 87 ----PKITYADLYQLAGVVAVEVTGGPTIDFVPGRKDSNACPEEG-RLPDAKKGAKHLRDVFYRMGLSDKDIVALSGGHT 161 (289)
T ss_pred ----CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCcCCccC-CCcCCCCCHHHHHHHHHHcCCCHHHHhhhccccc
Confidence 48999999999999999999999999999999999987655 8999999999999999999999999999999999
Q ss_pred ccccccccccccccccCCCCCCCCCCCHHHHHHHhccCCCCCCCCCCCCcccCCCCCCCCcccchHHHHHhhcc--ccc-
Q 045265 202 MGQTRCRYIVDRLYNYKNTGKPDPSMNTTLLNRLRKECPPRTRKGQSDPLVYLNPETGSSYRFSESYYSRVKTH--EAV- 278 (345)
Q Consensus 202 iG~ahc~~f~~Rl~~f~g~~~~dp~~d~~y~~~L~~~Cp~~~~~~~~~~~~~~~lD~~tp~~FDn~Yy~~l~~~--~gl- 278 (345)
||++||. |+ +|.| .+ ..||.+|||+||++++.+ +|+
T Consensus 162 iG~ahc~----r~-g~~g--------------------------------~~----~~Tp~~FDN~Yy~~ll~~~~~gll 200 (289)
T PLN02608 162 LGRAHPE----RS-GFDG--------------------------------PW----TKEPLKFDNSYFVELLKGESEGLL 200 (289)
T ss_pred ccccccc----CC-CCCC--------------------------------CC----CCCCCccChHHHHHHHcCCcCCcc
Confidence 9999994 54 3321 11 168999999999999998 788
Q ss_pred -cchhhhhccCCcchHHHHHHHhhCHHHHHHHHHHHHHHhhcCCCCCCCCCccccccc
Q 045265 279 -LGVDQQLSNGDNNTLQIVDEFAAGFEDFRKALALSMSRMGSINVLTGKQGEIRRNCR 335 (345)
Q Consensus 279 -L~SD~~L~~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~tG~~GeIR~~C~ 335 (345)
|+|||+|+ .|++|+++|+.||.||+.|+++|++||+||++|+|+||.+||+.+.-+
T Consensus 201 ~L~SD~~L~-~d~~T~~~V~~fA~~~~~F~~~Fa~Am~Km~~lgvltg~~Ge~~~~~~ 257 (289)
T PLN02608 201 KLPTDKALL-EDPEFRPYVELYAKDEDAFFRDYAESHKKLSELGFTPPSSAFKKKSTS 257 (289)
T ss_pred ccccCHhhh-cChhHHHHHHHHhhCHHHHHHHHHHHHHHHHcCCCCCCCCCcccccCc
Confidence 79999999 999999999999999999999999999999999999999999988653
No 5
>PLN02364 L-ascorbate peroxidase 1
Probab=100.00 E-value=7.2e-66 Score=483.23 Aligned_cols=233 Identities=26% Similarity=0.413 Sum_probs=211.7
Q ss_pred ccccCCCCCChhHHHHHHHHHHHHHhcCCCccchhhhhhhc-----cccCC--CCCceeeccCCCcccCCCCCCCC-chh
Q 045265 39 WHYYKVHNTCDDAEAYIRHQVELFYKHDKTIAPKLLRLLYS-----DCFVT--GCDASILLDRPNSEKTAPQNWGL-GAF 110 (345)
Q Consensus 39 ~~fY~~~~sCp~~e~iV~~~v~~~~~~d~~~a~~llRL~FH-----Dcfv~--GcDgSill~~~~~E~~~~~N~~l-~g~ 110 (345)
.+||...+-|+.+++.++..+++.+ .+++++|.||||+|| ||+++ ||||||.++ +|+++++|.+| ++|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~lRl~FHd~~t~dc~~~~GG~dgSi~~~---~E~~~~~N~gl~~~~ 78 (250)
T PLN02364 3 KNYPTVSEDYKKAVEKCRRKLRGLI-AEKNCAPIMVRLAWHSAGTFDCQSRTGGPFGTMRFD---AEQAHGANSGIHIAL 78 (250)
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHH-hCCCcHHHHHHHHHccccCcCcCCCCCCCCcccccc---ccccCCCccCHHHHH
Confidence 3678767789999999999999988 778999999999999 88876 999999776 59999999999 799
Q ss_pred HHHHHHHHHHHhhCCCCCchhhHHhhhchhhhhcCCCCcccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHH-CCCC
Q 045265 111 VLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPVFTGRRDGMTSTKESVDLPSPSISWKESLACFQS-KGLD 189 (345)
Q Consensus 111 ~~I~~iK~~le~~cp~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~lP~p~~~~~~l~~~F~~-~Glt 189 (345)
++|+.||+++ ++|||||||+||||+||+++|||.|+|++||+|++++.+.+ +||.|+.++++|++.|++ +|||
T Consensus 79 ~~i~~ik~~~-----~~VScADilalAardAV~~~GGP~~~v~~GR~D~~~s~~~~-~lP~p~~~~~~l~~~F~~~~Gl~ 152 (250)
T PLN02364 79 RLLDPIREQF-----PTISFADFHQLAGVVAVEVTGGPDIPFHPGREDKPQPPPEG-RLPDATKGCDHLRDVFAKQMGLS 152 (250)
T ss_pred HHHHHHHHHc-----CCcCHHHHHHHHHHHHHHhcCCCeeCCCCCCCCcccccccC-CCCCCCcCHHHHHHHHHHhcCCC
Confidence 9999999987 48999999999999999999999999999999999988765 799999999999999997 5999
Q ss_pred ccchhhhcccccccccccccccccccccCCCCCCCCCCCHHHHHHHhccCCCCCCCCCCCCcccCCCCCCCCcccchHHH
Q 045265 190 VQDMVTLLGAHTMGQTRCRYIVDRLYNYKNTGKPDPSMNTTLLNRLRKECPPRTRKGQSDPLVYLNPETGSSYRFSESYY 269 (345)
Q Consensus 190 ~~elVaLsGaHTiG~ahc~~f~~Rl~~f~g~~~~dp~~d~~y~~~L~~~Cp~~~~~~~~~~~~~~~lD~~tp~~FDn~Yy 269 (345)
++|||+|+||||||++|| .|+ +|.| .+ + .||.+|||+||
T Consensus 153 ~~d~VaLsGaHTiG~~hc----~r~-~~~g--------------------------------~~---~-~tp~~fDn~Yy 191 (250)
T PLN02364 153 DKDIVALSGAHTLGRCHK----DRS-GFEG--------------------------------AW---T-SNPLIFDNSYF 191 (250)
T ss_pred HHHheeeecceeeccccC----CCC-CCCC--------------------------------CC---C-CCCCccchHHH
Confidence 999999999999999999 454 3321 11 1 68999999999
Q ss_pred HHhhcc--ccccc--hhhhhccCCcchHHHHHHHhhCHHHHHHHHHHHHHHhhcCCCC
Q 045265 270 SRVKTH--EAVLG--VDQQLSNGDNNTLQIVDEFAAGFEDFRKALALSMSRMGSINVL 323 (345)
Q Consensus 270 ~~l~~~--~glL~--SD~~L~~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~ 323 (345)
++|+.+ +|+|. |||+|+ .|++|+.+|+.||.|++.|+++|++||+||++||+-
T Consensus 192 ~~ll~~~~~gll~l~sD~~L~-~d~~T~~~v~~~a~~~~~F~~~Fa~Am~Km~~lg~~ 248 (250)
T PLN02364 192 KELLSGEKEGLLQLVSDKALL-DDPVFRPLVEKYAADEDAFFADYAEAHMKLSELGFA 248 (250)
T ss_pred HHHhcCCcCCCccccchHHHc-cCchHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 999999 89865 999999 999999999999999999999999999999999973
No 6
>cd00691 ascorbate_peroxidase Ascorbate peroxidases and cytochrome C peroxidases. Ascorbate peroxidases are a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Along with related catalase-peroxidases, ascorbate peroxidases belong to class I of the plant superfamily. Ascorbate peroxidases are found in the chloroplasts and/or cytosol of algae and plants, where they have been shown to control the concentration of lethal hydrogen peroxide molecules. The yeast cytochrome c peroxidase is a divergent member of the family; it forms a complex with cytochrome c to catalyze the reduction of hydrogen peroxide to water.
Probab=100.00 E-value=1.3e-65 Score=483.03 Aligned_cols=225 Identities=27% Similarity=0.362 Sum_probs=201.7
Q ss_pred hhHHHHHHHHHHHHHhcCCCccchhhhhhhccccC-------CCCCceeeccCCCcccCCCCCCCC-chhHHHHHHHHHH
Q 045265 49 DDAEAYIRHQVELFYKHDKTIAPKLLRLLYSDCFV-------TGCDASILLDRPNSEKTAPQNWGL-GAFVLIDKIKVVL 120 (345)
Q Consensus 49 p~~e~iV~~~v~~~~~~d~~~a~~llRL~FHDcfv-------~GcDgSill~~~~~E~~~~~N~~l-~g~~~I~~iK~~l 120 (345)
-..++||+++|++.++ +++++|++|||+|||||+ +||||++.+. +|+++++|.+| ++|++|++||+++
T Consensus 10 ~~~~~~V~~~v~~~~~-~~~~~~~llRl~FHDc~~~d~s~~~~G~d~s~~~~---~E~~~~~N~~L~~~~~~i~~iK~~~ 85 (253)
T cd00691 10 AKDLEAARNDIAKLID-DKNCAPILVRLAWHDSGTYDKETKTGGSNGTIRFD---PELNHGANAGLDIARKLLEPIKKKY 85 (253)
T ss_pred HHHHHHHHHHHHHHHH-cCCcHHHHHHHHHHHHhccccccCCCCCCccccch---hhcCCccccchHHHHHHHHHHHHHc
Confidence 3568999999999999 999999999999999985 3334444333 59999999999 7999999999875
Q ss_pred HhhCCCCCchhhHHhhhchhhhhcCCCCcccccCCCCCCCCCCCCCC--CCCCCCCCHHHHHHHHHHCCCCccchhhhcc
Q 045265 121 EQRCPGAVSCSDILNLATRDAVHMAGAPSYPVFTGRRDGMTSTKESV--DLPSPSISWKESLACFQSKGLDVQDMVTLLG 198 (345)
Q Consensus 121 e~~cp~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~--~lP~p~~~~~~l~~~F~~~Glt~~elVaLsG 198 (345)
| +||||||||||||+||+.+|||.|+|++||+|+.++....+ +||.|+.+++++++.|+++|||++|||+|+|
T Consensus 86 ----~-~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~~~lP~p~~~~~~l~~~F~~~Gls~~d~VaLsG 160 (253)
T cd00691 86 ----P-DISYADLWQLAGVVAIEEMGGPKIPFRPGRVDASDPEECPPEGRLPDASKGADHLRDVFYRMGFNDQEIVALSG 160 (253)
T ss_pred ----C-CCCHHHHHHHHHHHHHHHcCCCccCcccCCCCCCcccccCcccCCCCCCCCHHHHHHHHHhcCCCHHHHHHhcc
Confidence 4 79999999999999999999999999999999999886544 7999999999999999999999999999999
Q ss_pred cccccccccccccccccccCCCCCCCCCCCHHHHHHHhccCCCCCCCCCCCCcccCCCCCCCCcccchHHHHHhhcccc-
Q 045265 199 AHTMGQTRCRYIVDRLYNYKNTGKPDPSMNTTLLNRLRKECPPRTRKGQSDPLVYLNPETGSSYRFSESYYSRVKTHEA- 277 (345)
Q Consensus 199 aHTiG~ahc~~f~~Rl~~f~g~~~~dp~~d~~y~~~L~~~Cp~~~~~~~~~~~~~~~lD~~tp~~FDn~Yy~~l~~~~g- 277 (345)
|||||++||.. ++|.| . |..||.+|||+||+||+.++|
T Consensus 161 aHTiG~a~c~~-----~~~~g--------------------------------~----~~~tp~~FDn~Yy~~ll~~~g~ 199 (253)
T cd00691 161 AHTLGRCHKER-----SGYDG--------------------------------P----WTKNPLKFDNSYFKELLEEDWK 199 (253)
T ss_pred cceeecccccC-----CCCCC--------------------------------C----CCCCCCcccHHHHHHHhcCCCc
Confidence 99999999943 23321 0 116899999999999999999
Q ss_pred -------ccchhhhhccCCcchHHHHHHHhhCHHHHHHHHHHHHHHhhcCCCCC
Q 045265 278 -------VLGVDQQLSNGDNNTLQIVDEFAAGFEDFRKALALSMSRMGSINVLT 324 (345)
Q Consensus 278 -------lL~SD~~L~~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~t 324 (345)
+|+||++|+ .|++|+.+|+.||.|+++|+++|++||+||++|||..
T Consensus 200 ~~~~~~~~L~sD~~L~-~d~~t~~~v~~~a~~~~~F~~~Fa~Am~Km~~l~v~~ 252 (253)
T cd00691 200 LPTPGLLMLPTDKALL-EDPKFRPYVELYAKDQDAFFKDYAEAHKKLSELGVPF 252 (253)
T ss_pred cCcCcceechhhHHHH-cCccHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCCCC
Confidence 999999999 9999999999999999999999999999999999864
No 7
>cd00692 ligninase Ligninase and other manganese-dependent fungal peroxidases. Ligninases and related extracellular fungal peroxidases belong to class II of the plant heme-dependent peroxidase superfamily. All members of the superfamily share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Class II peroxidases are fungal glycoproteins that have been implicated in the oxidative breakdown of lignin, the main cell wall component of woody plants. They contain four conserved disulphide bridges and two conserved calcium binding sites.
Probab=100.00 E-value=2.7e-65 Score=494.12 Aligned_cols=243 Identities=23% Similarity=0.291 Sum_probs=218.3
Q ss_pred CCChhHHHHHHHHHHHHHhcCCC---ccchhhhhhhccccC------------CCCCceeeccCCCcccCCCCCCCCchh
Q 045265 46 NTCDDAEAYIRHQVELFYKHDKT---IAPKLLRLLYSDCFV------------TGCDASILLDRPNSEKTAPQNWGLGAF 110 (345)
Q Consensus 46 ~sCp~~e~iV~~~v~~~~~~d~~---~a~~llRL~FHDcfv------------~GcDgSill~~~~~E~~~~~N~~l~g~ 110 (345)
..|+ +|..|++.|++.+..+.. .|+.+|||+|||||+ +|||||||++.+ .|+++++|.||+
T Consensus 12 ~~cc-~~~~v~~dl~~~~~~~~~c~~~a~~~lRL~FHD~~~~~~~~~~~~~~~gGcDgSill~~~-~E~~~~~N~gL~-- 87 (328)
T cd00692 12 AACC-VWFDILDDIQGNLFNGGECGEEAHESLRLTFHDAIGFSPALAAGQFGGGGADGSIVLFDD-IETAFHANIGLD-- 87 (328)
T ss_pred hhhc-chHHHHHHHHHHHhcCCCCchHHHHhHHHhhhcccccccccccCCCCCCCcCceeecCCc-ccccCCCCCCHH--
Confidence 4487 699999999999986554 566799999999996 899999999853 699999999998
Q ss_pred HHHHHHHHHHHhhCCCCCchhhHHhhhchhhhh-cCCCCcccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCC
Q 045265 111 VLIDKIKVVLEQRCPGAVSCSDILNLATRDAVH-MAGAPSYPVFTGRRDGMTSTKESVDLPSPSISWKESLACFQSKGLD 189 (345)
Q Consensus 111 ~~I~~iK~~le~~cp~~VScADilalAar~Av~-~~GGP~~~v~~GR~D~~~s~~~~~~lP~p~~~~~~l~~~F~~~Glt 189 (345)
++|+.||..+|+.| ||||||||||||+||+ +.|||.|+|++||+|++++.+.+ +||.|+.++++|++.|++|||+
T Consensus 88 ~vvd~lk~~~e~~c---VScADiialAa~~AV~~~~GGP~i~v~~GR~D~~~s~~~g-~LP~p~~sv~~l~~~F~~~Gf~ 163 (328)
T cd00692 88 EIVEALRPFHQKHN---VSMADFIQFAGAVAVSNCPGAPRLEFYAGRKDATQPAPDG-LVPEPFDSVDKILARFADAGFS 163 (328)
T ss_pred HHHHHHHHHHHhcC---cCHHHHHHHHHHHHHHhcCCCCcccccCCCCCCCCCCccc-CCCCCCCCHHHHHHHHHHcCCC
Confidence 99999999999998 9999999999999999 67999999999999999998777 8999999999999999999999
Q ss_pred ccchhhhcccccccccccccccccccccCCCCCCCCCCCHHHHHHHhccCCCCCCCCCCCCcccCCCCCCCCcccchHHH
Q 045265 190 VQDMVTLLGAHTMGQTRCRYIVDRLYNYKNTGKPDPSMNTTLLNRLRKECPPRTRKGQSDPLVYLNPETGSSYRFSESYY 269 (345)
Q Consensus 190 ~~elVaLsGaHTiG~ahc~~f~~Rl~~f~g~~~~dp~~d~~y~~~L~~~Cp~~~~~~~~~~~~~~~lD~~tp~~FDn~Yy 269 (345)
++|||+|+||||||++|. +||+++ ..++| .||.+|||+||
T Consensus 164 ~~E~VaLsGAHTiG~a~~---------------~Dps~~------------------------g~p~D-~TP~~FDn~Yf 203 (328)
T cd00692 164 PDELVALLAAHSVAAQDF---------------VDPSIA------------------------GTPFD-STPGVFDTQFF 203 (328)
T ss_pred HHHHhhhcccccccccCC---------------CCCCCC------------------------CCCCC-CCcchhcHHHH
Confidence 999999999999999981 466663 13567 69999999999
Q ss_pred HHhh-cccc-------------------ccchhhhhccCCcchHHHHHHHhhCHHHHHHHHHHHHHHhhcCCCCCCCCCc
Q 045265 270 SRVK-THEA-------------------VLGVDQQLSNGDNNTLQIVDEFAAGFEDFRKALALSMSRMGSINVLTGKQGE 329 (345)
Q Consensus 270 ~~l~-~~~g-------------------lL~SD~~L~~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~tG~~Ge 329 (345)
+|++ ++.+ +|+||++|+ .|++|+.+|++||+||++|+++|++||+||++|||. ..
T Consensus 204 ~~ll~~~~~~~g~~~~~~e~~~~~~g~~~L~SD~~L~-~D~~T~~~v~~fa~dq~~f~~~Fa~Am~KLs~lgv~----~~ 278 (328)
T cd00692 204 IETLLKGTAFPGSGGNQGEVESPLPGEFRLQSDFLLA-RDPRTACEWQSFVNNQAKMNAAFAAAMLKLSLLGQD----NI 278 (328)
T ss_pred HHHHHcCCCCCCccccccccccCccccccccchHHHh-cCCcHHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCC----cc
Confidence 9987 5555 499999999 999999999999999999999999999999999986 34
Q ss_pred ccccccccCCCC
Q 045265 330 IRRNCRCTNADT 341 (345)
Q Consensus 330 IR~~C~~~n~~~ 341 (345)
.+.+|+.|++..
T Consensus 279 ~l~dcs~v~p~~ 290 (328)
T cd00692 279 SLTDCSDVIPPP 290 (328)
T ss_pred hhccCcccCCCC
Confidence 888999998653
No 8
>PLN02879 L-ascorbate peroxidase
Probab=100.00 E-value=7.1e-64 Score=469.13 Aligned_cols=219 Identities=26% Similarity=0.373 Sum_probs=198.1
Q ss_pred HHHHHHHHHHHhcCCCccchhhhhhhccccC-------CCCCceeeccCCCcccCCCCCCCCc-hhHHHHHHHHHHHhhC
Q 045265 53 AYIRHQVELFYKHDKTIAPKLLRLLYSDCFV-------TGCDASILLDRPNSEKTAPQNWGLG-AFVLIDKIKVVLEQRC 124 (345)
Q Consensus 53 ~iV~~~v~~~~~~d~~~a~~llRL~FHDcfv-------~GcDgSill~~~~~E~~~~~N~~l~-g~~~I~~iK~~le~~c 124 (345)
+-++..+.+.+ .+.+.+|.+|||+||||.+ |||||||++. .|+++++|.||+ ++++|+.||+++
T Consensus 18 ~~~~~~~~~~~-~~~~~~p~~vRla~Hdagt~~~~~~~GG~~Gsirf~---~E~~~~~N~gL~~~~~~i~~iK~~~---- 89 (251)
T PLN02879 18 QRCKRKLRGLI-AEKHCAPIVLRLAWHSAGTFDVKTKTGGPFGTIRHP---QELAHDANNGLDIAVRLLDPIKELF---- 89 (251)
T ss_pred HHHHHHHHHHH-hCCCchhHhHHHHHhhhccccCCCCCCCCCeeecCh---hhccCCCcCChHHHHHHHHHHHHHc----
Confidence 34566677766 4579999999999999975 8999999985 599999999998 999999999987
Q ss_pred CCCCchhhHHhhhchhhhhcCCCCcccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCccchhhhcccccccc
Q 045265 125 PGAVSCSDILNLATRDAVHMAGAPSYPVFTGRRDGMTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLGAHTMGQ 204 (345)
Q Consensus 125 p~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~lP~p~~~~~~l~~~F~~~Glt~~elVaLsGaHTiG~ 204 (345)
++|||||||+||||+||+++|||.|+|++||+|+.++.+.+ +||.|+.++++|++.|++|||+++|||+|+||||||+
T Consensus 90 -~~VScADilalAa~~AV~~~GGP~~~~~~GR~D~~~~~~~~-~lP~p~~~~~~l~~~F~~~Gl~~~dlVALsGaHTiG~ 167 (251)
T PLN02879 90 -PILSYADFYQLAGVVAVEITGGPEIPFHPGRLDKVEPPPEG-RLPQATKGVDHLRDVFGRMGLNDKDIVALSGGHTLGR 167 (251)
T ss_pred -CCcCHHHHHHHHHHHHHHhcCCCccCCCCCCCCCCCCCccc-CCCCCCCCHHHHHHHHHHcCCCHHHHeeeeccccccc
Confidence 47999999999999999999999999999999999987766 8999999999999999999999999999999999999
Q ss_pred cccccccccccccCCCCCCCCCCCHHHHHHHhccCCCCCCCCCCCCcccCCCCCCCCcccchHHHHHhhcc--ccc--cc
Q 045265 205 TRCRYIVDRLYNYKNTGKPDPSMNTTLLNRLRKECPPRTRKGQSDPLVYLNPETGSSYRFSESYYSRVKTH--EAV--LG 280 (345)
Q Consensus 205 ahc~~f~~Rl~~f~g~~~~dp~~d~~y~~~L~~~Cp~~~~~~~~~~~~~~~lD~~tp~~FDn~Yy~~l~~~--~gl--L~ 280 (345)
+||. | ++|.| . +| .||.+|||+||++|+.+ +|+ |+
T Consensus 168 ah~~----r-~g~~g--------------------------------~---~d-~tp~~FDN~Yy~~ll~~~~~gll~L~ 206 (251)
T PLN02879 168 CHKE----R-SGFEG--------------------------------A---WT-PNPLIFDNSYFKEILSGEKEGLLQLP 206 (251)
T ss_pred cccc----c-ccCCC--------------------------------C---CC-CCccceeHHHHHHHHcCCcCCCccch
Confidence 9994 3 33321 1 12 68999999999999999 888 68
Q ss_pred hhhhhccCCcchHHHHHHHhhCHHHHHHHHHHHHHHhhcCCCC
Q 045265 281 VDQQLSNGDNNTLQIVDEFAAGFEDFRKALALSMSRMGSINVL 323 (345)
Q Consensus 281 SD~~L~~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~lgv~ 323 (345)
||++|+ .|++|+++|++||.||++|+++|++||+||++||+.
T Consensus 207 SD~aL~-~D~~t~~~V~~~A~d~~~F~~~Fa~Am~KL~~lg~~ 248 (251)
T PLN02879 207 TDKALL-DDPLFLPFVEKYAADEDAFFEDYTEAHLKLSELGFA 248 (251)
T ss_pred hhHHHh-cCCcHHHHHHHHhhCHHHHHHHHHHHHHHHHccCCC
Confidence 999999 999999999999999999999999999999999974
No 9
>cd00314 plant_peroxidase_like Heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX), which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions. Several sub-families can be identified. Class I includes intracellular peroxidases present in fungi, plants, archaea and bacteria, called catalase-peroxidases, that can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. Catalase-peroxidases are typically comprised of two homologous domains that probably arose via a single gene duplication event. Class II includes ligninase and other extracellular fungal peroxidases, while class III is comprised
Probab=100.00 E-value=2.3e-58 Score=434.38 Aligned_cols=220 Identities=28% Similarity=0.385 Sum_probs=202.9
Q ss_pred HHHHHHHHHHhcCCCccchhhhhhhccccCC--------CCCceeeccCCCcccCCCCCCCC-chhHHHHHHHHHHHhhC
Q 045265 54 YIRHQVELFYKHDKTIAPKLLRLLYSDCFVT--------GCDASILLDRPNSEKTAPQNWGL-GAFVLIDKIKVVLEQRC 124 (345)
Q Consensus 54 iV~~~v~~~~~~d~~~a~~llRL~FHDcfv~--------GcDgSill~~~~~E~~~~~N~~l-~g~~~I~~iK~~le~~c 124 (345)
.|++.|++.+.+++++++++|||+|||||+. ||||||++++ |+++++|.+| +++++|+.||+++|.
T Consensus 2 ~v~~~l~~~~~~~~~~~~~llRl~fHD~~~~~~~~~~~gg~dgsi~~~~---e~~~~~N~~l~~~~~~l~~ik~~~~~-- 76 (255)
T cd00314 2 AIKAILEDLITQAGALAGSLLRLAFHDAGTYDIADGKGGGADGSIRFEP---ELDRPENGGLDKALRALEPIKSAYDG-- 76 (255)
T ss_pred hHHHHHHHHHHhCcchHHHHHHHHHHHhccccccCCCCCCCCceEeccc---cccCcccccHHHHHHHHHHHHHHcCC--
Confidence 4788899999999999999999999999996 9999999985 9999999996 799999999999998
Q ss_pred CCCCchhhHHhhhchhhhhcC--CCCcccccCCCCCCCCCC-----CCCCCCCCCCCCHHHHHHHHHHCCCCccchhhhc
Q 045265 125 PGAVSCSDILNLATRDAVHMA--GAPSYPVFTGRRDGMTST-----KESVDLPSPSISWKESLACFQSKGLDVQDMVTLL 197 (345)
Q Consensus 125 p~~VScADilalAar~Av~~~--GGP~~~v~~GR~D~~~s~-----~~~~~lP~p~~~~~~l~~~F~~~Glt~~elVaLs 197 (345)
|++|||||||+||+++||+.+ |||.|+|++||+|+..+. +.+ ++|.|..+++++++.|+++||+++|||||+
T Consensus 77 ~~~vS~ADlialAa~~Av~~~~~ggp~~~~~~GR~D~~~~~~~~p~P~~-~~p~~~~~~~~~~~~F~~~Gl~~~e~VAL~ 155 (255)
T cd00314 77 GNPVSRADLIALAGAVAVESTFGGGPLIPFRFGRLDATEPDLGVPDPEG-LLPNETSSATELRDKFKRMGLSPSELVALS 155 (255)
T ss_pred CCcccHHHHHHHHHHHHHHHhccCCCeeeeCCCCCCCchhhccCCCCCC-CCCCccchHHHHHHHHHHcCCCHHHHHhhc
Confidence 899999999999999999999 999999999999999653 322 788888999999999999999999999999
Q ss_pred -ccccc-cccccccccccccccCCCCCCCCCCCHHHHHHHhccCCCCCCCCCCCCcccCCCCCCCCcccchHHHHHhhcc
Q 045265 198 -GAHTM-GQTRCRYIVDRLYNYKNTGKPDPSMNTTLLNRLRKECPPRTRKGQSDPLVYLNPETGSSYRFSESYYSRVKTH 275 (345)
Q Consensus 198 -GaHTi-G~ahc~~f~~Rl~~f~g~~~~dp~~d~~y~~~L~~~Cp~~~~~~~~~~~~~~~lD~~tp~~FDn~Yy~~l~~~ 275 (345)
||||| |++||..+..|+ |+ +|+.||.+|||+||++++.+
T Consensus 156 ~GaHti~G~~~~~~~~~~~------------------------~~---------------~~~~tp~~fDN~yy~~l~~~ 196 (255)
T cd00314 156 AGAHTLGGKNHGDLLNYEG------------------------SG---------------LWTSTPFTFDNAYFKNLLDM 196 (255)
T ss_pred cCCeeccCcccCCCCCccc------------------------CC---------------CCCCCCCccchHHHHHHhcC
Confidence 99999 999998777664 11 23479999999999999998
Q ss_pred c----------------cccchhhhhccCCcchHHHHHHHhhCHHHHHHHHHHHHHHhhc
Q 045265 276 E----------------AVLGVDQQLSNGDNNTLQIVDEFAAGFEDFRKALALSMSRMGS 319 (345)
Q Consensus 276 ~----------------glL~SD~~L~~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~ 319 (345)
+ ++|+||++|+ .|++|+.+|+.||.|+++|+++|++||+||++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~l~sD~~L~-~d~~t~~~v~~ya~~~~~f~~~Fa~a~~Km~~ 255 (255)
T cd00314 197 NWEWRVGSPDPDGVKGPGLLPSDYALL-SDSETRALVERYASDQEKFFEDFAKAWIKMVN 255 (255)
T ss_pred CcccccCCccCCCcccCCCchhhHHHh-cCHhHHHHHHHHHhCHHHHHHHHHHHHHHHcC
Confidence 8 8999999999 99999999999999999999999999999985
No 10
>cd00649 catalase_peroxidase_1 N-terminal catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms, where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to class I of the plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C
Probab=100.00 E-value=1.7e-56 Score=439.55 Aligned_cols=257 Identities=18% Similarity=0.239 Sum_probs=228.0
Q ss_pred HHHHHHHHHHHhcC--------CCccchhhhhhhccccC-------CCCC-ceeeccCCCcccCCCCCCCCc-hhHHHHH
Q 045265 53 AYIRHQVELFYKHD--------KTIAPKLLRLLYSDCFV-------TGCD-ASILLDRPNSEKTAPQNWGLG-AFVLIDK 115 (345)
Q Consensus 53 ~iV~~~v~~~~~~d--------~~~a~~llRL~FHDcfv-------~GcD-gSill~~~~~E~~~~~N~~l~-g~~~I~~ 115 (345)
+.|++.|++.+... ...+|.+|||+|||+.+ ||++ |+|++++ |++++.|.+|. ++.+++.
T Consensus 45 ~~~~~di~~ll~~s~~~wp~D~g~~gp~lvRlAWh~AgTy~~~d~~GG~ngg~iRf~p---e~~~~~N~gL~~a~~~L~p 121 (409)
T cd00649 45 EALKEDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIADGRGGAGTGQQRFAP---LNSWPDNVNLDKARRLLWP 121 (409)
T ss_pred HHHHHHHHHHHhcccccCccccCCcccceeeeeccccccccCcCCCCCCCCCcccccc---ccCcHhhhhHHHHHHHHHH
Confidence 67888888888753 37999999999999997 8997 7999984 99999999996 8999999
Q ss_pred HHHHHHhhCCCCCchhhHHhhhchhhhhcCCCCcccccCCCCCCCCCC--------------------------------
Q 045265 116 IKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPVFTGRRDGMTST-------------------------------- 163 (345)
Q Consensus 116 iK~~le~~cp~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~-------------------------------- 163 (345)
||++. |..||+||+|+||+.+|||.+|||.|++.+||.|...+.
T Consensus 122 ik~k~----~~~iS~ADL~~LaG~~AiE~~Ggp~ipf~~GR~Da~~~~~~v~wg~~~~~~~~~~~~~~~~l~~pl~a~~m 197 (409)
T cd00649 122 IKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPDEDVYWGPEKEWLADKRYSGDRDLENPLAAVQM 197 (409)
T ss_pred HHHHc----CCCccHHHHHHHHHHHHHHHcCCCcccccCCCCccCCCccccccCcchhcccccccccchhhccchhhhhc
Confidence 99875 456999999999999999999999999999999996532
Q ss_pred ------CCCC-CCCCCCCCHHHHHHHHHHCCCCccchhhh-cccccccccccccccccccccCCCCCCCCCCCHHHHHHH
Q 045265 164 ------KESV-DLPSPSISWKESLACFQSKGLDVQDMVTL-LGAHTMGQTRCRYIVDRLYNYKNTGKPDPSMNTTLLNRL 235 (345)
Q Consensus 164 ------~~~~-~lP~p~~~~~~l~~~F~~~Glt~~elVaL-sGaHTiG~ahc~~f~~Rl~~f~g~~~~dp~~d~~y~~~L 235 (345)
+++. .||+|..++.+|++.|.+||||++||||| +||||||++||..|.+||. +||.+++.|++.|
T Consensus 198 gliyv~Pegp~gLPdP~~sa~~LR~~F~RmGlnd~E~VAL~sGAHTiGkaHc~~~~~rlg-------~dP~~~~~~~~gL 270 (409)
T cd00649 198 GLIYVNPEGPDGNPDPLAAAKDIRETFARMAMNDEETVALIAGGHTFGKTHGAGPASHVG-------PEPEAAPIEQQGL 270 (409)
T ss_pred cccccCCCCCCCCCCCccCHHHHHHHHHHcCCCHHHHeeeccCCcceeecCcccccccCC-------CCCCcCHHHHHhh
Confidence 2344 69999999999999999999999999999 5999999999999999983 6999999999999
Q ss_pred h--ccCCCCCCCCCCCCcccCCCC---CCCCcccchHHHHHhhc------------------------------------
Q 045265 236 R--KECPPRTRKGQSDPLVYLNPE---TGSSYRFSESYYSRVKT------------------------------------ 274 (345)
Q Consensus 236 ~--~~Cp~~~~~~~~~~~~~~~lD---~~tp~~FDn~Yy~~l~~------------------------------------ 274 (345)
+ ++||.+.+ +++ ....+| +.||.+|||+||++|++
T Consensus 271 gw~~~Cp~g~g-~~t---~~sglDG~Wt~tP~~FDN~YF~nLl~~eW~~~~~p~g~~Q~~~~~~~~~~~~~d~~~~~~~~ 346 (409)
T cd00649 271 GWKNSYGTGKG-KDT---ITSGLEGAWTPTPTKWDNNYLKNLFGYEWELTKSPAGAWQWVPKNAAGENTVPDAHDPSKKH 346 (409)
T ss_pred cccccCCCCCC-CCC---ccccCCCCCCCCcchhhHHHHHHHHhccceeccCCCCcccccccCccccccCCCcccccccc
Confidence 6 89997541 122 244677 68999999999999998
Q ss_pred cccccchhhhhccCCcchHHHHHHHhhCHHHHHHHHHHHHHHh--hcCCCCCCCCC
Q 045265 275 HEAVLGVDQQLSNGDNNTLQIVDEFAAGFEDFRKALALSMSRM--GSINVLTGKQG 328 (345)
Q Consensus 275 ~~glL~SD~~L~~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km--~~lgv~tG~~G 328 (345)
+.++|+||++|+ .|++|+++|++||.|+++||++|++||+|| +.+|+++-.-|
T Consensus 347 ~~gmL~SD~aL~-~Dp~tr~iV~~yA~d~~~Ff~dFA~A~~KL~hrdmgp~~~~~g 401 (409)
T cd00649 347 APMMLTTDLALR-FDPEYEKISRRFLENPDEFADAFAKAWFKLTHRDMGPKSRYLG 401 (409)
T ss_pred CcccchhhHhhh-cCccHHHHHHHHhcCHHHHHHHHHHHHHHHccccCCchhhhcC
Confidence 568999999999 999999999999999999999999999999 68999886655
No 11
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=4.3e-54 Score=446.36 Aligned_cols=256 Identities=18% Similarity=0.221 Sum_probs=223.6
Q ss_pred HHHHHHHHHHHhcC--------CCccchhhhhhhccccC-------CCCC-ceeeccCCCcccCCCCCCCCc-hhHHHHH
Q 045265 53 AYIRHQVELFYKHD--------KTIAPKLLRLLYSDCFV-------TGCD-ASILLDRPNSEKTAPQNWGLG-AFVLIDK 115 (345)
Q Consensus 53 ~iV~~~v~~~~~~d--------~~~a~~llRL~FHDcfv-------~GcD-gSill~~~~~E~~~~~N~~l~-g~~~I~~ 115 (345)
+.|++.|++.+... ...+|.+|||+||++.+ |||+ |+|++.+ |++++.|.+|. ++.+++.
T Consensus 55 ~a~~~dl~~l~~~s~~wwpad~g~ygp~~vRlAWHsAgTYr~~d~rGGa~gg~iRf~P---~~sw~~N~~Ldka~~lL~p 131 (716)
T TIGR00198 55 AAVKQDLKHLMTDSQSWWPADWGHYGGLFIRMAWHAAGTYRIADGRGGAATGNQRFAP---LNSWPDNVNLDKARRLLWP 131 (716)
T ss_pred HHHHHHHHHHHhcCcccCccccCCcceeeeeeeccccccccCCCCCCCCCCCceeccc---ccCchhhhhHHHHHHHHHH
Confidence 45888888888763 37999999999999997 8985 7999985 99999999995 8999999
Q ss_pred HHHHHHhhCCCCCchhhHHhhhchhhhhcCCCCcccccCCCCCCCCCC--------------------------------
Q 045265 116 IKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPVFTGRRDGMTST-------------------------------- 163 (345)
Q Consensus 116 iK~~le~~cp~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~-------------------------------- 163 (345)
||+ +||++|||||||+||+++||+.+|||.|+|.+||+|+..+.
T Consensus 132 Ik~----kyp~~VS~ADLivLAG~vAVE~~Ggp~i~f~~GR~D~~~~~~d~~~g~e~~~l~~~~~~~~~l~~p~a~~~~G 207 (716)
T TIGR00198 132 IKK----KYGNKLSWADLIILAGTVAYESMGLKVFGFAGGREDIWEPDKDIYWGAEKEWLTSSREDRESLENPLAATEMG 207 (716)
T ss_pred HHH----HCCCceeHHHHHHHHHHHHHHHhCCCccCCCCCCCCCCCcccccccccccchhhccccccccccccchhhhcc
Confidence 997 49999999999999999999999999999999999994321
Q ss_pred -----CCCC-CCCCCCCCHHHHHHHHHHCCCCccchhhhc-ccccccccccccccccccccCCCCCCCCCCCHHHHHHHh
Q 045265 164 -----KESV-DLPSPSISWKESLACFQSKGLDVQDMVTLL-GAHTMGQTRCRYIVDRLYNYKNTGKPDPSMNTTLLNRLR 236 (345)
Q Consensus 164 -----~~~~-~lP~p~~~~~~l~~~F~~~Glt~~elVaLs-GaHTiG~ahc~~f~~Rl~~f~g~~~~dp~~d~~y~~~L~ 236 (345)
++++ .+|.|..++++|++.|.+||||++|||||+ ||||||++||.+|.+|| ++||++++.|++.|+
T Consensus 208 liyvnpeg~~~lPdP~~sa~~Lrd~F~rmGLnd~EmVALiaGaHTiGkaHc~s~~~rl-------g~dP~~~~~~~~gLg 280 (716)
T TIGR00198 208 LIYVNPEGPDGHPDPLCTAQDIRTTFARMGMNDEETVALIAGGHTVGKCHGAGPAELI-------GPDPEGAPIEEQGLG 280 (716)
T ss_pred ccccCcccccCCCCCCCCHHHHHHHHHHcCCChHHHeeeecCceeccccCCCcccccC-------CCCCCcCHHHHHHhc
Confidence 2344 699999999999999999999999999995 99999999999999998 279999999999999
Q ss_pred ccCCCCCCCCCCCCcccCCCC---CCCCcccchHHHHHhhcc----------------------------------cccc
Q 045265 237 KECPPRTRKGQSDPLVYLNPE---TGSSYRFSESYYSRVKTH----------------------------------EAVL 279 (345)
Q Consensus 237 ~~Cp~~~~~~~~~~~~~~~lD---~~tp~~FDn~Yy~~l~~~----------------------------------~glL 279 (345)
.+||.+.+.+.. .....+| +.||.+|||+||+||+.+ .++|
T Consensus 281 ~~c~~~~g~g~d--t~~sglDG~wT~TP~~FDN~YF~nLl~~~w~~~~s~~g~~q~~~~~~~~~~p~~~~~~~~~~~~mL 358 (716)
T TIGR00198 281 WHNQYGKGVGRD--TMTSGLEVAWTTTPTQWDNGYFYMLFNYEWELKKSPAGAWQWEAVDAPEIIPDVEDPNKKHNPIML 358 (716)
T ss_pred ccCCCCCCCCCC--cccccCCCCCCCCCCccchHHHHHHhcCCceeeecCCCCceeeecccccccccccccccccccCcc
Confidence 999864311111 0234566 689999999999999975 6899
Q ss_pred chhhhhccCCcchHHHHHHHhhCHHHHHHHHHHHHHHhh--cCCCCCC
Q 045265 280 GVDQQLSNGDNNTLQIVDEFAAGFEDFRKALALSMSRMG--SINVLTG 325 (345)
Q Consensus 280 ~SD~~L~~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~--~lgv~tG 325 (345)
+||++|. .|++|+++|+.||.|+++|+++|++||+||+ .+|++.-
T Consensus 359 ~SDlaL~-~Dp~~r~iVe~yA~d~~~F~~dFA~Aw~KL~~~d~gp~~~ 405 (716)
T TIGR00198 359 DADLALR-FDPEFRKISRRFLREPDYFAEAFAKAWFKLTHRDMGPKSR 405 (716)
T ss_pred chhHHhc-cCccHHHHHHHHhcCHHHHHHHHHHHHHHHcccccCchhh
Confidence 9999999 9999999999999999999999999999999 4665543
No 12
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=2.7e-50 Score=415.95 Aligned_cols=257 Identities=18% Similarity=0.252 Sum_probs=222.9
Q ss_pred HHHHHHHHHHHhcC--------CCccchhhhhhhccccC-------CCCC-ceeeccCCCcccCCCCCCCCc-hhHHHHH
Q 045265 53 AYIRHQVELFYKHD--------KTIAPKLLRLLYSDCFV-------TGCD-ASILLDRPNSEKTAPQNWGLG-AFVLIDK 115 (345)
Q Consensus 53 ~iV~~~v~~~~~~d--------~~~a~~llRL~FHDcfv-------~GcD-gSill~~~~~E~~~~~N~~l~-g~~~I~~ 115 (345)
+.|++.|.+.+... ...+|.+|||+||++.+ |||+ |+|++.+ |++++.|.+|. ++.+++.
T Consensus 57 ~a~k~di~~l~~~sqdwwpaD~g~ygp~~vRlAWH~AgTYr~~d~rGGangg~iRf~p---e~~w~~N~gL~ka~~~L~p 133 (726)
T PRK15061 57 EALKKDLKALMTDSQDWWPADYGHYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFAP---LNSWPDNVNLDKARRLLWP 133 (726)
T ss_pred HHHHHHHHHHHhcccccccccCCCccceeeeeeecccccccCcCCCCCCCCCcccCcc---cccchhhhhHHHHHHHHHH
Confidence 56888888888753 37999999999999997 8997 7999984 99999999996 8999999
Q ss_pred HHHHHHhhCCCCCchhhHHhhhchhhhhcCCCCcccccCCCCCCCCCC--------------------------------
Q 045265 116 IKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPVFTGRRDGMTST-------------------------------- 163 (345)
Q Consensus 116 iK~~le~~cp~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~-------------------------------- 163 (345)
||++. |..||+||+|+||+..|||.+|||.|++..||.|...+.
T Consensus 134 ik~ky----~~~iS~ADLi~LaG~vAiE~~Ggp~i~f~~GR~D~~~~~~~v~wg~e~~~l~~~~r~~~~~~l~~pl~a~~ 209 (726)
T PRK15061 134 IKQKY----GNKISWADLMILAGNVALESMGFKTFGFAGGREDVWEPEEDVYWGPEKEWLGGDERYSGERDLENPLAAVQ 209 (726)
T ss_pred HHHHh----CCCccHHHHHHHHHHHHHHHcCCCccCcCCCCCCCcCCccccccCccccccccccccccccccccchhhhh
Confidence 99875 557999999999999999999999999999999986432
Q ss_pred -------CCCC-CCCCCCCCHHHHHHHHHHCCCCccchhhhc-ccccccccccccccccccccCCCCCCCCCCCHHHHHH
Q 045265 164 -------KESV-DLPSPSISWKESLACFQSKGLDVQDMVTLL-GAHTMGQTRCRYIVDRLYNYKNTGKPDPSMNTTLLNR 234 (345)
Q Consensus 164 -------~~~~-~lP~p~~~~~~l~~~F~~~Glt~~elVaLs-GaHTiG~ahc~~f~~Rl~~f~g~~~~dp~~d~~y~~~ 234 (345)
++++ .+|+|..++.+|++.|.+||||++|||||+ ||||||++||..|.+|| ++||.+++.|++.
T Consensus 210 mgliyvnpegp~glPdP~~sa~~lR~tF~RMGmnDeEtVALiaGgHT~GkaHca~~~~rl-------gpdP~~a~~~~qg 282 (726)
T PRK15061 210 MGLIYVNPEGPNGNPDPLAAARDIRETFARMAMNDEETVALIAGGHTFGKTHGAGDASHV-------GPEPEAAPIEEQG 282 (726)
T ss_pred ccceecCCCCCCCCCCcccCHHHHHHHHHHcCCCHHHheeeccCCceeeeCCCcCccccc-------CCCCCcCHHHHHh
Confidence 2233 489999999999999999999999999995 99999999999999998 2799999999999
Q ss_pred Hh--ccCCCCCCCCCCCCcccCCCC---CCCCcccchHHHHHhhcc----------------------------------
Q 045265 235 LR--KECPPRTRKGQSDPLVYLNPE---TGSSYRFSESYYSRVKTH---------------------------------- 275 (345)
Q Consensus 235 L~--~~Cp~~~~~~~~~~~~~~~lD---~~tp~~FDn~Yy~~l~~~---------------------------------- 275 (345)
|. +.||.+.+ +++ ....+| +.||.+|||+||++|+.+
T Consensus 283 Lgw~~~c~~g~g-~dt---~tsGldG~Wt~tPt~fDN~YF~nLl~~~W~~~~sp~G~~qw~~~~~~~~~~~pd~~~~~~~ 358 (726)
T PRK15061 283 LGWKNSYGSGKG-ADT---ITSGLEGAWTTTPTQWDNGYFENLFGYEWELTKSPAGAWQWVPKDGAAEDTVPDAHDPSKK 358 (726)
T ss_pred ccccccCCCCCC-CCC---ccccCCCCCCCCcchhhHHHHHHHhhCcceeccCCCccccccccCccccccCCcccccccc
Confidence 85 89997431 122 234566 689999999999999985
Q ss_pred --ccccchhhhhccCCcchHHHHHHHhhCHHHHHHHHHHHHHHhhc--CCCCCCCCC
Q 045265 276 --EAVLGVDQQLSNGDNNTLQIVDEFAAGFEDFRKALALSMSRMGS--INVLTGKQG 328 (345)
Q Consensus 276 --~glL~SD~~L~~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~--lgv~tG~~G 328 (345)
.++|+||++|. .||+|+++|++||.|+++|+++|++||+||++ +|+++-.-|
T Consensus 359 ~~~~MLtSD~AL~-~DP~~r~iV~~fA~d~~~F~~~FA~A~~KL~hrdmgp~~ry~g 414 (726)
T PRK15061 359 HAPTMLTTDLALR-FDPEYEKISRRFLENPEEFADAFARAWFKLTHRDMGPKSRYLG 414 (726)
T ss_pred cCcccccccHHhh-cCCcHHHHHHHHhcCHHHHHHHHHHHHHHHcccCCCchhhhcC
Confidence 58999999999 99999999999999999999999999999954 776554433
No 13
>cd08201 plant_peroxidase_like_1 Uncharacterized family of plant peroxidase-like proteins. This is a subgroup of heme-dependent peroxidases similar to plant peroxidases. Along with animal peroxidases, these enzymes belong to a group of peroxidases containing a heme prosthetic group (ferriprotoporphyrin IX) which catalyzes a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. The plant peroxidase-like superfamily is found in all three kingdoms of life and carries out a variety of biosynthetic and degradative functions.
Probab=100.00 E-value=3.2e-51 Score=383.65 Aligned_cols=219 Identities=20% Similarity=0.282 Sum_probs=180.9
Q ss_pred HHHHHHHHHhcCCCccchhhhhhhcccc-------CCCCCceeeccCCCcccC-CCCCCCCchhHHHHHHHHHHHhhCCC
Q 045265 55 IRHQVELFYKHDKTIAPKLLRLLYSDCF-------VTGCDASILLDRPNSEKT-APQNWGLGAFVLIDKIKVVLEQRCPG 126 (345)
Q Consensus 55 V~~~v~~~~~~d~~~a~~llRL~FHDcf-------v~GcDgSill~~~~~E~~-~~~N~~l~g~~~I~~iK~~le~~cp~ 126 (345)
|...-......+++++++||||+||||| ++||||||+++...+|+. .+.|.+|++|+.|+.+
T Consensus 27 v~~c~~~~~~~~~~~aa~~LRL~FHDc~t~~~~~g~gGcDgSIlle~~~~En~G~~~n~~l~~~~~i~~~---------- 96 (264)
T cd08201 27 VTPCTDCAPGPGRQAAAEWLRTAFHDMATHNVDDGTGGLDASIQYELDRPENIGSGFNTTLNFFVNFYSP---------- 96 (264)
T ss_pred cccccccCcCCCccHHHHHHHHHHHhhcCcccCCCCCCCCcceeecCCChhhccCchhhccccceeeccC----------
Confidence 3333344556788999999999999999 899999999985447776 4566678888877543
Q ss_pred CCchhhHHhhhchhhhhcCCCCcccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCccchhhhcc-ccccccc
Q 045265 127 AVSCSDILNLATRDAVHMAGAPSYPVFTGRRDGMTSTKESVDLPSPSISWKESLACFQSKGLDVQDMVTLLG-AHTMGQT 205 (345)
Q Consensus 127 ~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~lP~p~~~~~~l~~~F~~~Glt~~elVaLsG-aHTiG~a 205 (345)
+||||||||||+|+||+.+|||.|+|++||+|++++.+.+ ||.|+.++++|++.|++|||+++|||+|+| |||||++
T Consensus 97 ~VScADiialAa~~AV~~~GGP~i~v~~GR~Da~~s~~~g--lP~P~~~v~~l~~~Fa~~Gfs~~DmVaLsggaHTiG~a 174 (264)
T cd08201 97 RSSMADLIAMGVVTSVASCGGPVVPFRAGRIDATEAGQAG--VPEPQTDLGTTTESFRRQGFSTSEMIALVACGHTLGGV 174 (264)
T ss_pred ccCHHHHHHHHHHHHHHHcCCCeecccccCCCcccccccc--CCCCccCHHHHHHHHHHcCCChHHHheeecCCeeeeec
Confidence 5999999999999999999999999999999999988764 999999999999999999999999999995 9999999
Q ss_pred ccccccccccccCCCCCCCCCCCHHHHHHHhccCCCCCCCCCCCCcccCCCCCCCCcccchHHHHHhhccc--c------
Q 045265 206 RCRYIVDRLYNYKNTGKPDPSMNTTLLNRLRKECPPRTRKGQSDPLVYLNPETGSSYRFSESYYSRVKTHE--A------ 277 (345)
Q Consensus 206 hc~~f~~Rl~~f~g~~~~dp~~d~~y~~~L~~~Cp~~~~~~~~~~~~~~~lD~~tp~~FDn~Yy~~l~~~~--g------ 277 (345)
||..|.++.- |.. ..+ ...++| .||.+|||+||.+++.+. +
T Consensus 175 hc~~f~~~~~---------~g~------------------~~~---~~~p~d-stp~~FDn~~f~E~l~g~~~~~L~~~~ 223 (264)
T cd08201 175 HSEDFPEIVP---------PGS------------------VPD---TVLQFF-DTTIQFDNKVVTEYLSGTTNNPLVVGP 223 (264)
T ss_pred ccccchhhcC---------Ccc------------------ccC---CCCCCC-CCccccchHHHHHHhcCCCCCceeecC
Confidence 9999888742 100 000 123566 899999999999999874 2
Q ss_pred --ccchhhhhccCCcchHHHHHHHhhCHHHHHHHHHHHHHHhhc
Q 045265 278 --VLGVDQQLSNGDNNTLQIVDEFAAGFEDFRKALALSMSRMGS 319 (345)
Q Consensus 278 --lL~SD~~L~~~d~~t~~~V~~yA~d~~~F~~~Fa~Am~Km~~ 319 (345)
.+.||..++..|. ...++..| +++.|.+.++..+.||.+
T Consensus 224 ~~~~~sd~r~f~~d~--n~t~~~l~-~~~~f~~~c~~~~~~mi~ 264 (264)
T cd08201 224 NNTTNSDLRIFSSDG--NVTMNELA-SPDTFQKTCADILQRMID 264 (264)
T ss_pred CCCccchhhheecCc--cHHHHHhc-ChHHHHHHHHHHHHHHhC
Confidence 3589999994443 34557777 799999999999999974
No 14
>cd08200 catalase_peroxidase_2 C-terminal non-catalytic domain of catalase-peroxidases. This is a subgroup of heme-dependent peroxidases of the plant superfamily that share a heme prosthetic group and catalyze a multistep oxidative reaction involving hydrogen peroxide as the electron acceptor. Catalase-peroxidases can exhibit both catalase and broad-spectrum peroxidase activities depending on the steady-state concentration of hydrogen peroxide. These enzymes are found in many archaeal and bacterial organisms where they neutralize potentially lethal hydrogen peroxide molecules generated during photosynthesis or stationary phase. Along with related intracellular fungal and plant peroxidases, catalase-peroxidases belong to plant peroxidase superfamily. Unlike the eukaryotic enzymes, they are typically comprised of two homologous domains that probably arose via a single gene duplication event. The heme binding motif is present only in the N-terminal domain; the function of the C-terminal do
Probab=100.00 E-value=2.4e-39 Score=306.99 Aligned_cols=218 Identities=17% Similarity=0.225 Sum_probs=179.6
Q ss_pred HHHHHHHhcCCCccchhhhhhhccccC-------CCCCce-eeccCCCcccCCCCCCC--Cc-hhHHHHHHHHHHHh-hC
Q 045265 57 HQVELFYKHDKTIAPKLLRLLYSDCFV-------TGCDAS-ILLDRPNSEKTAPQNWG--LG-AFVLIDKIKVVLEQ-RC 124 (345)
Q Consensus 57 ~~v~~~~~~d~~~a~~llRL~FHDcfv-------~GcDgS-ill~~~~~E~~~~~N~~--l~-g~~~I~~iK~~le~-~c 124 (345)
+.+++.+......++.++||+||++.+ ||++|+ |.+.+ |++++.|.+ |. .+.+++.||++... .-
T Consensus 17 ~~lk~~i~~~gl~~~~lvrlAWhsAgTyr~sd~rGGaNGariRl~p---e~~w~~N~~~~L~~~~~~Le~ik~~~~~~~~ 93 (297)
T cd08200 17 AALKAKILASGLTVSELVSTAWASASTFRNSDKRGGANGARIRLAP---QKDWEVNEPEELAKVLAVLEGIQKEFNESQS 93 (297)
T ss_pred HHHHHHHHhcCCcHHHHHHHhhhccccccCCCCCCCCCcccccCcc---ccCcCccCcHHHHHHHHHHHHHHHHhccccc
Confidence 557777777778999999999999997 899998 88884 999999998 85 89999999998742 11
Q ss_pred CC-CCchhhHHhhhchhhhhcCCC-----CcccccCCCCCCCCCCCCC----CCCCCCC------------CCHHHHHHH
Q 045265 125 PG-AVSCSDILNLATRDAVHMAGA-----PSYPVFTGRRDGMTSTKES----VDLPSPS------------ISWKESLAC 182 (345)
Q Consensus 125 p~-~VScADilalAar~Av~~~GG-----P~~~v~~GR~D~~~s~~~~----~~lP~p~------------~~~~~l~~~ 182 (345)
++ .||+||+|+||+..|||.+|| |.|++.+||.|...+.... ..+|.+. .+.+.|++.
T Consensus 94 ~~~~vS~ADLivLaG~vAiE~agg~ag~~p~Ipf~pGR~Da~~~~td~~sf~~l~P~adg~rny~~~~~~~~~~~~Lrd~ 173 (297)
T cd08200 94 GGKKVSLADLIVLGGCAAVEKAAKDAGVDIKVPFTPGRTDATQEQTDVESFEVLEPKADGFRNYLKKGYRVPPEEMLVDK 173 (297)
T ss_pred CCccccHHHHHHHHhHHHHHHHHhccCCCceeccCCCCCCcccCCCCcccccccCCCCcccccccccCCCCCHHHHHHHH
Confidence 22 699999999999999999999 9999999999998753221 0345332 245789999
Q ss_pred HHHCCCCccchhhhcccc-cccccccccccccccccCCCCCCCCCCCHHHHHHHhccCCCCCCCCCCCCcccCCCCCCCC
Q 045265 183 FQSKGLDVQDMVTLLGAH-TMGQTRCRYIVDRLYNYKNTGKPDPSMNTTLLNRLRKECPPRTRKGQSDPLVYLNPETGSS 261 (345)
Q Consensus 183 F~~~Glt~~elVaLsGaH-TiG~ahc~~f~~Rl~~f~g~~~~dp~~d~~y~~~L~~~Cp~~~~~~~~~~~~~~~lD~~tp 261 (345)
|.++|||++|||||+||| ++|..|..+ + .| .| +.+|
T Consensus 174 f~rlglsd~EmvaL~Gg~r~lG~~~~~s-------~------------------------~G--------~w----T~~p 210 (297)
T cd08200 174 AQLLTLTAPEMTVLVGGLRVLGANYGGS-------K------------------------HG--------VF----TDRP 210 (297)
T ss_pred HHhCCCChHHHhheecchhhcccCCCCC-------C------------------------CC--------CC----cCCC
Confidence 999999999999999998 699876311 0 01 23 2789
Q ss_pred cccchHHHHHhhccc--------------------c-----ccchhhhhccCCcchHHHHHHHhhC--HHHHHHHHHHHH
Q 045265 262 YRFSESYYSRVKTHE--------------------A-----VLGVDQQLSNGDNNTLQIVDEFAAG--FEDFRKALALSM 314 (345)
Q Consensus 262 ~~FDn~Yy~~l~~~~--------------------g-----lL~SD~~L~~~d~~t~~~V~~yA~d--~~~F~~~Fa~Am 314 (345)
.+|||.||+||+... | .+.+|..|. .|++.+++|+.||.| +++||+||++||
T Consensus 211 ~~f~N~fF~nLLd~~~~W~~~~~~~~~~~~~dr~~g~~~~~~t~~Dl~l~-sd~~~R~~ve~YA~dd~~~~F~~DF~~A~ 289 (297)
T cd08200 211 GVLTNDFFVNLLDMSTEWKPADEDDGLFEGRDRKTGEVKWTATRVDLVFG-SNSELRAVAEVYASDDAQEKFVKDFVAAW 289 (297)
T ss_pred CccccHHHHHHhcccceeeecCCCCCceeeccCCCCceeeccChhhhhhc-cCHHHHHHHHHHhcccchhHHHHHHHHHH
Confidence 999999999999520 1 268899999 999999999999998 999999999999
Q ss_pred HHhhcCC
Q 045265 315 SRMGSIN 321 (345)
Q Consensus 315 ~Km~~lg 321 (345)
.||+++.
T Consensus 290 ~Klmeld 296 (297)
T cd08200 290 TKVMNLD 296 (297)
T ss_pred HHHHhcC
Confidence 9999874
No 15
>TIGR00198 cat_per_HPI catalase/peroxidase HPI. Note that the translation PID:g296476 from accession X71420 from Rhodobacter capsulatus B10 contains extensive frameshift differences from the rest of the orthologous family.
Probab=100.00 E-value=9e-34 Score=294.97 Aligned_cols=213 Identities=18% Similarity=0.245 Sum_probs=172.1
Q ss_pred HHHHHhcCCCccchhhhhhhccccC-------CCCCce-eeccCCCcccCCCCC--CCCc-hhHHHHHHHHHHHhhCCCC
Q 045265 59 VELFYKHDKTIAPKLLRLLYSDCFV-------TGCDAS-ILLDRPNSEKTAPQN--WGLG-AFVLIDKIKVVLEQRCPGA 127 (345)
Q Consensus 59 v~~~~~~d~~~a~~llRL~FHDcfv-------~GcDgS-ill~~~~~E~~~~~N--~~l~-g~~~I~~iK~~le~~cp~~ 127 (345)
+++.+....-..+.|+|++||++.+ ||++|+ |+|.+ |++++.| .+|. .+.+++.||++... ..
T Consensus 437 lk~~i~~sgl~~~~lVr~AWhsA~Tyr~sd~rGGaNGariRl~p---e~~w~~N~p~gL~~vl~~Le~Ik~~f~~---~~ 510 (716)
T TIGR00198 437 LKQQILASGLSVSELVCTAWASASTFRSSDYRGGANGARIRLEP---QKNWPVNEPTRLAKVLAVLEKIQAEFAK---GP 510 (716)
T ss_pred HHHHHHhcCCcHHHHHHHhhhhcccccCCCCCCCCCcceeecch---hcCcccCCHHHHHHHHHHHHHHHHHcCC---Cc
Confidence 3333555566789999999999997 899998 88884 9999999 7885 89999999987632 26
Q ss_pred CchhhHHhhhchhhhhcC---CCC--cccccCCCCCCCCCCCCCC-CC---CCC------------CCCHHHHHHHHHHC
Q 045265 128 VSCSDILNLATRDAVHMA---GAP--SYPVFTGRRDGMTSTKESV-DL---PSP------------SISWKESLACFQSK 186 (345)
Q Consensus 128 VScADilalAar~Av~~~---GGP--~~~v~~GR~D~~~s~~~~~-~l---P~p------------~~~~~~l~~~F~~~ 186 (345)
||.||+|+||+..|||.+ ||| .+++.+||.|.+....... .. |.+ ....+.|++.|.++
T Consensus 511 vS~ADLivLaG~vAVE~aa~~gG~~~~Vpf~pGR~Da~~~~td~~~~~~l~p~adgfRn~~~~~~~~~~~~~l~d~a~~l 590 (716)
T TIGR00198 511 VSLADLIVLGGGAAVEKAALDAGISVNVPFLPGRVDATQAMTDAESFTPLEPIADGFRNYLKRDYAVTPEELLLDKAQLL 590 (716)
T ss_pred ccHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCccccCCCCccccccCCCCCcccchhccccccCCHHHHHHHHHHhC
Confidence 999999999999999988 898 5788999999987532111 11 211 23456789999999
Q ss_pred CCCccchhhhcccc-cccccccccccccccccCCCCCCCCCCCHHHHHHHhccCCCCCCCCCCCCcccCCCCCCCCcccc
Q 045265 187 GLDVQDMVTLLGAH-TMGQTRCRYIVDRLYNYKNTGKPDPSMNTTLLNRLRKECPPRTRKGQSDPLVYLNPETGSSYRFS 265 (345)
Q Consensus 187 Glt~~elVaLsGaH-TiG~ahc~~f~~Rl~~f~g~~~~dp~~d~~y~~~L~~~Cp~~~~~~~~~~~~~~~lD~~tp~~FD 265 (345)
|||+.|||||+||| ++|+.|..+ + .| .|+ .+|.+||
T Consensus 591 glt~~EmvaL~Gg~r~lG~~~~~s-------~------------------------~G--------~~T----~~p~~f~ 627 (716)
T TIGR00198 591 TLTAPEMTVLIGGMRVLGANHGGS-------K------------------------HG--------VFT----DRVGVLS 627 (716)
T ss_pred CCChHHHHheecchhhccccCCCC-------C------------------------CC--------CCc----CCCCccc
Confidence 99999999999995 999988311 0 01 232 7899999
Q ss_pred hHHHHHhhccc--------------------c---c--cchhhhhccCCcchHHHHHHHhhCH--HHHHHHHHHHHHHhh
Q 045265 266 ESYYSRVKTHE--------------------A---V--LGVDQQLSNGDNNTLQIVDEFAAGF--EDFRKALALSMSRMG 318 (345)
Q Consensus 266 n~Yy~~l~~~~--------------------g---l--L~SD~~L~~~d~~t~~~V~~yA~d~--~~F~~~Fa~Am~Km~ 318 (345)
|.||+||+... | + ..+|..|. +|++.+++|+.||+|+ ++|++||++||.|++
T Consensus 628 NdfF~~LLd~~~~w~~~~~~~~~~~~~dr~tg~~~~~~t~~Dl~~~-sd~~lra~aE~YA~dd~~~~F~~DF~~Aw~Klm 706 (716)
T TIGR00198 628 NDFFVNLLDMAYEWRAADNNRYLFEGGDRQTGEVKWTATRVDLVFG-SNSILRAVAEVYAQDDAREKFVKDFVAAWTKVM 706 (716)
T ss_pred cHHHHHHhcCCceeeecCCCCceeeeecCCCCceeeccChhheeec-cCHHHHHHHHHHhcccccchHHHHHHHHHHHHH
Confidence 99999998621 1 2 27899999 9999999999999997 899999999999999
Q ss_pred cCC
Q 045265 319 SIN 321 (345)
Q Consensus 319 ~lg 321 (345)
+++
T Consensus 707 ~ld 709 (716)
T TIGR00198 707 NLD 709 (716)
T ss_pred hCC
Confidence 987
No 16
>PRK15061 catalase/hydroperoxidase HPI(I); Provisional
Probab=100.00 E-value=1.6e-33 Score=291.82 Aligned_cols=218 Identities=15% Similarity=0.192 Sum_probs=179.1
Q ss_pred HHHHHHHhcCCCccchhhhhhhccccC-------CCCCce-eeccCCCcccCCCCCC--CCc-hhHHHHHHHHHHHhhC-
Q 045265 57 HQVELFYKHDKTIAPKLLRLLYSDCFV-------TGCDAS-ILLDRPNSEKTAPQNW--GLG-AFVLIDKIKVVLEQRC- 124 (345)
Q Consensus 57 ~~v~~~~~~d~~~a~~llRL~FHDcfv-------~GcDgS-ill~~~~~E~~~~~N~--~l~-g~~~I~~iK~~le~~c- 124 (345)
..+++.+....-..+.|+|++||++.+ ||++|+ |+|.+ |++++.|. +|. .+++++.||++.+..-
T Consensus 442 ~~lk~~i~~~gl~~~~LVr~AWhsA~Tyr~sd~rGGaNGarIRl~P---q~~w~~N~p~~L~~vl~~LE~Ik~~f~~~~~ 518 (726)
T PRK15061 442 AALKAKILASGLSVSELVSTAWASASTFRGSDKRGGANGARIRLAP---QKDWEVNEPAQLAKVLAVLEGIQAEFNAAQS 518 (726)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHhhcccccCCCCCCCCCccceeccc---ccCccccCHHHHHHHHHHHHHHHHHHhhccC
Confidence 456677777777889999999999997 899998 99984 99999999 885 8999999999986432
Q ss_pred -CCCCchhhHHhhhchhhhhcC---CC--CcccccCCCCCCCCCCCCCC----CCCCCC------------CCHHHHHHH
Q 045265 125 -PGAVSCSDILNLATRDAVHMA---GA--PSYPVFTGRRDGMTSTKESV----DLPSPS------------ISWKESLAC 182 (345)
Q Consensus 125 -p~~VScADilalAar~Av~~~---GG--P~~~v~~GR~D~~~s~~~~~----~lP~p~------------~~~~~l~~~ 182 (345)
...||.||+|+||+..|||.+ || |.|++.+||.|.+....... .+|.+. ...+.|++.
T Consensus 519 ~~~~vS~ADLivLaG~vAIE~aa~~aG~~~~VPf~pGR~Da~~~~td~esf~~l~P~Adgfrny~~~~~~~~~e~~L~d~ 598 (726)
T PRK15061 519 GGKKVSLADLIVLGGNAAVEQAAKAAGHDVTVPFTPGRTDATQEQTDVESFAVLEPKADGFRNYLKKGYSVSPEELLVDK 598 (726)
T ss_pred CCCceeHHHHHHHHHHHHHHHHHHhCCCCcccCcCCCCCCcccCCCCcccccccCCCCccccccccccCCCCHHHHHHHH
Confidence 125999999999999999988 68 99999999999987532211 456533 234799999
Q ss_pred HHHCCCCccchhhhcccc-cccccccccccccccccCCCCCCCCCCCHHHHHHHhccCCCCCCCCCCCCcccCCCCCCCC
Q 045265 183 FQSKGLDVQDMVTLLGAH-TMGQTRCRYIVDRLYNYKNTGKPDPSMNTTLLNRLRKECPPRTRKGQSDPLVYLNPETGSS 261 (345)
Q Consensus 183 F~~~Glt~~elVaLsGaH-TiG~ahc~~f~~Rl~~f~g~~~~dp~~d~~y~~~L~~~Cp~~~~~~~~~~~~~~~lD~~tp 261 (345)
|.++|||+.|||||+||| ++|..|-.+ + .| .|+ .+|
T Consensus 599 a~~lglt~~EmvaL~Gg~r~Lg~~~~~S-------~------------------------~G--------~~T----~~p 635 (726)
T PRK15061 599 AQLLTLTAPEMTVLVGGLRVLGANYGGS-------K------------------------HG--------VFT----DRP 635 (726)
T ss_pred HHhCCCChHHHhheecchhhcccCCCCC-------C------------------------CC--------CCc----CCC
Confidence 999999999999999997 688876211 0 01 232 789
Q ss_pred cccchHHHHHhhccc--------------------c---c--cchhhhhccCCcchHHHHHHHhhC--HHHHHHHHHHHH
Q 045265 262 YRFSESYYSRVKTHE--------------------A---V--LGVDQQLSNGDNNTLQIVDEFAAG--FEDFRKALALSM 314 (345)
Q Consensus 262 ~~FDn~Yy~~l~~~~--------------------g---l--L~SD~~L~~~d~~t~~~V~~yA~d--~~~F~~~Fa~Am 314 (345)
.+|||.||+||+... | + +.+|..|. +|++.|++|+.||.| +++|++||++||
T Consensus 636 ~~fsNdfFvnLLdm~~~W~~~~~~~~~ye~~Dr~tg~~~~~~t~~Dlvfg-sds~lRa~aEvYA~dd~~~kF~~DF~~Aw 714 (726)
T PRK15061 636 GVLTNDFFVNLLDMGTEWKPTDEDEEVYEGRDRKTGEVKWTATRVDLVFG-SNSQLRALAEVYASDDAKEKFVRDFVAAW 714 (726)
T ss_pred CccccHHHHHHhcCCceeeecCCCCCceeeccCCCcceeeccChhheecc-cCHHHHHHHHHHhcccchhHHHHHHHHHH
Confidence 999999999999520 1 1 47899999 999999999999999 999999999999
Q ss_pred HHhhcCC
Q 045265 315 SRMGSIN 321 (345)
Q Consensus 315 ~Km~~lg 321 (345)
.|+++++
T Consensus 715 ~Kvmeld 721 (726)
T PRK15061 715 TKVMNLD 721 (726)
T ss_pred HHHHhCC
Confidence 9999987
No 17
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.97 E-value=2e-31 Score=265.04 Aligned_cols=238 Identities=18% Similarity=0.231 Sum_probs=195.8
Q ss_pred CccchhhhhhhccccC-------CCCC-ceeeccCCCcccCCCCCCCCc-hhHHHHHHHHHHHhhCCCCCchhhHHhhhc
Q 045265 68 TIAPKLLRLLYSDCFV-------TGCD-ASILLDRPNSEKTAPQNWGLG-AFVLIDKIKVVLEQRCPGAVSCSDILNLAT 138 (345)
Q Consensus 68 ~~a~~llRL~FHDcfv-------~GcD-gSill~~~~~E~~~~~N~~l~-g~~~I~~iK~~le~~cp~~VScADilalAa 138 (345)
..+|.+|||+||-+.+ ||.. |..++. .+.++|.|.+|+ ++.++..||++. +..+|+||+|.|++
T Consensus 93 hYGplfIRmAWHsAGTYRi~DGRGGa~~G~qRFa---PlnSWPDN~nLDKarRLLWPIKkKY----G~kiSWaDL~iLaG 165 (730)
T COG0376 93 HYGPLFIRMAWHSAGTYRIGDGRGGAGGGQQRFA---PLNSWPDNANLDKARRLLWPIKKKY----GRKISWADLIILAG 165 (730)
T ss_pred ccccceeeeeecccCceecccCCCCCCCCceecc---cccCCCcccchHHHHHHhhhHhHhh----cccccHhHhhhhhc
Confidence 4889999999999987 5554 466666 488999999996 999999999875 56899999999999
Q ss_pred hhhhhcCCCCcccccCCCCCCCCCCC--------------------------------------CCC-CCCCCCCCHHHH
Q 045265 139 RDAVHMAGAPSYPVFTGRRDGMTSTK--------------------------------------ESV-DLPSPSISWKES 179 (345)
Q Consensus 139 r~Av~~~GGP~~~v~~GR~D~~~s~~--------------------------------------~~~-~lP~p~~~~~~l 179 (345)
..|++.+|++++.+..||.|...+.. +++ ..|+|..++.++
T Consensus 166 nvAlEsMGfktfGFa~GR~D~wepd~dvyWG~e~~wl~d~Ry~~~~~Le~PlaavqMGLIYVNPEGpng~PDpl~aA~dI 245 (730)
T COG0376 166 NVALESMGFKTFGFAGGREDVWEPDEDVYWGSEKTWLGDERYSGDRDLENPLAAVQMGLIYVNPEGPNGNPDPLAAARDI 245 (730)
T ss_pred hhhhhhcCCccccccCCCCcCCCCccccccCccccccccccccccccccCchhhheeeeEEeCCCCCCCCCChhhhHHHH
Confidence 99999999999999999999876543 455 689999999999
Q ss_pred HHHHHHCCCCccchhhhc-ccccccccccccccccccccCCCCCCCCCCCHHHHHHHh--ccCCCCCCCCCCCCcccCCC
Q 045265 180 LACFQSKGLDVQDMVTLL-GAHTMGQTRCRYIVDRLYNYKNTGKPDPSMNTTLLNRLR--KECPPRTRKGQSDPLVYLNP 256 (345)
Q Consensus 180 ~~~F~~~Glt~~elVaLs-GaHTiG~ahc~~f~~Rl~~f~g~~~~dp~~d~~y~~~L~--~~Cp~~~~~~~~~~~~~~~l 256 (345)
+..|++|+++++|.|||+ ||||+|++|...-.+.+ +++|.-.+.-.+.|- ++|..+.+ .++.+..+...
T Consensus 246 RetFaRMaMNDeETVALiaGGHtfGKtHGag~a~~v-------g~ePe~a~ie~qGlGW~~~~g~G~G-~dtitsGlE~~ 317 (730)
T COG0376 246 RETFARMAMNDEETVALIAGGHTFGKTHGAGPASNV-------GPEPEAAPIEQQGLGWANTYGSGKG-PDTITSGLEGA 317 (730)
T ss_pred HHHHHHhcCCcHhhhhhhhcccccccccCCCchhhc-------CCCccccchhhhccccccccCCCcC-ccccccccccc
Confidence 999999999999999997 79999999975522222 467776666666664 45543331 12212234455
Q ss_pred CCCCCcccchHHHHHhhcc-----------------------------------ccccchhhhhccCCcchHHHHHHHhh
Q 045265 257 ETGSSYRFSESYYSRVKTH-----------------------------------EAVLGVDQQLSNGDNNTLQIVDEFAA 301 (345)
Q Consensus 257 D~~tp~~FDn~Yy~~l~~~-----------------------------------~glL~SD~~L~~~d~~t~~~V~~yA~ 301 (345)
+..||++|||+||.+|+.. -.||++|.+|. -||..+++.++|.+
T Consensus 318 Wt~tPT~w~n~ff~~Lf~yEWeltksPAGa~Qw~~k~~~~~~~pd~~dp~~~~~p~MlttDlaLr-~DP~Y~kIs~rf~e 396 (730)
T COG0376 318 WTTTPTQWSNEFFENLFNYEWELTKSPAGAWQWDAKSAAAETIPDAHDPSKKHGPMMLTTDLALR-FDPEYEKISRRFLE 396 (730)
T ss_pred CCCCcchhhhHHHHHHhccceeeecCCCccccccccCccccCCCCCCCcccccCceeeccchhhh-cChHHHHHHHHHHh
Confidence 6789999999999999863 15899999999 99999999999999
Q ss_pred CHHHHHHHHHHHHHHhhcCC
Q 045265 302 GFEDFRKALALSMSRMGSIN 321 (345)
Q Consensus 302 d~~~F~~~Fa~Am~Km~~lg 321 (345)
|++.|.+.|++||.||.+-+
T Consensus 397 ~pd~F~~~FArAWfKLtHRD 416 (730)
T COG0376 397 DPDEFADAFARAWFKLTHRD 416 (730)
T ss_pred CHHHHHHHHHHHHHHHhhcc
Confidence 99999999999999998743
No 18
>COG0376 KatG Catalase (peroxidase I) [Inorganic ion transport and metabolism]
Probab=99.39 E-value=2.5e-12 Score=129.46 Aligned_cols=213 Identities=18% Similarity=0.246 Sum_probs=153.9
Q ss_pred HHHHHHhcCCCccchhhhhhhccccC-------CCCCc-eeeccCCCcccCCCCCC--CCc-hhHHHHHHHHHHHhhCCC
Q 045265 58 QVELFYKHDKTIAPKLLRLLYSDCFV-------TGCDA-SILLDRPNSEKTAPQNW--GLG-AFVLIDKIKVVLEQRCPG 126 (345)
Q Consensus 58 ~v~~~~~~d~~~a~~llRL~FHDcfv-------~GcDg-Sill~~~~~E~~~~~N~--~l~-g~~~I~~iK~~le~~cp~ 126 (345)
.++..+....-....|+-.+|-.+-+ ||.+| -|.|.+ .++++.|. -|. -+.+++.|.+..+ .
T Consensus 453 ~lK~~IlasgLsvs~lVstAWaSAsTfRgsDkRGGaNGaRirLaP---qkdWevN~P~~l~kvl~~le~iq~~fn----k 525 (730)
T COG0376 453 ALKAKILASGLSVSQLVSTAWASASTFRGSDKRGGANGARIRLAP---QKDWEVNQPAELAKVLAVLEKIQKEFN----K 525 (730)
T ss_pred HHHHHHHHccCCHHHHHHHHHHhhhhccCCcccCCcCcceEeecc---cccCCCCCHHHHHHHHHHHHHHHHHhc----C
Confidence 45566666666677888888887765 78888 588884 89999996 443 6888888888876 4
Q ss_pred CCchhhHHhhhchhhhhcC---CCCcc--cccCCCCCCCCCCCCCC---CC-CC------------CCCCHHHHHHHHHH
Q 045265 127 AVSCSDILNLATRDAVHMA---GAPSY--PVFTGRRDGMTSTKESV---DL-PS------------PSISWKESLACFQS 185 (345)
Q Consensus 127 ~VScADilalAar~Av~~~---GGP~~--~v~~GR~D~~~s~~~~~---~l-P~------------p~~~~~~l~~~F~~ 185 (345)
.||.||+|+|++..|||.+ +|-.+ ++..||.|+........ .| |- ...+-+-|++.-+-
T Consensus 526 kvSlADlIVL~G~a~ie~AAk~aG~~v~VPF~pGR~DA~qeqtDv~sf~~LeP~aDGfRNy~~~~~~~~pe~~LvDkAql 605 (730)
T COG0376 526 KVSLADLIVLGGNAAVEKAAKAAGFSVTVPFAPGRTDASQEQTDVESFAVLEPIADGFRNYVKKDYVLTPEELLVDKAQL 605 (730)
T ss_pred ccchhHheeecchHHHHHHHHhcCceeeeccCCCCcccchhhcchhhhhcccccchhhhhhccCCCcCCHHHHHHHHHHH
Confidence 7999999999999999854 66654 56699999876432110 11 21 11234567788888
Q ss_pred CCCCccchhhhccccc-ccccccccccccccccCCCCCCCCCCCHHHHHHHhccCCCCCCCCCCCCcccCCCCCCCCccc
Q 045265 186 KGLDVQDMVTLLGAHT-MGQTRCRYIVDRLYNYKNTGKPDPSMNTTLLNRLRKECPPRTRKGQSDPLVYLNPETGSSYRF 264 (345)
Q Consensus 186 ~Glt~~elVaLsGaHT-iG~ahc~~f~~Rl~~f~g~~~~dp~~d~~y~~~L~~~Cp~~~~~~~~~~~~~~~lD~~tp~~F 264 (345)
.+||.-||++|.||-. +|. ||.|+. .+ .++ ..|..+
T Consensus 606 L~LtapemtVLiGGlRvLg~-----------n~g~s~--------------------~G--------VfT----~~pg~L 642 (730)
T COG0376 606 LTLTAPEMTVLIGGLRVLGA-----------NYGGSK--------------------HG--------VFT----DRPGVL 642 (730)
T ss_pred hccCCccceEEEcceEeecc-----------CCCCCc--------------------cc--------eec----cCcccc
Confidence 9999999999998863 443 332210 01 121 467788
Q ss_pred chHHHHHhhcc----------c----------cc-----cchhhhhccCCcchHHHHHHHhhC--HHHHHHHHHHHHHHh
Q 045265 265 SESYYSRVKTH----------E----------AV-----LGVDQQLSNGDNNTLQIVDEFAAG--FEDFRKALALSMSRM 317 (345)
Q Consensus 265 Dn~Yy~~l~~~----------~----------gl-----L~SD~~L~~~d~~t~~~V~~yA~d--~~~F~~~Fa~Am~Km 317 (345)
.|.||.||+.. + |- -..|..+- +++..|.+.+.||.+ +++|.+||+.||.|.
T Consensus 643 tndFFvnLlDM~~~W~~~~~~~~~feg~DrktG~~kwt~trvDLvfG-sns~LRA~aEVYa~dda~ekFv~DFvaaw~kV 721 (730)
T COG0376 643 TNDFFVNLLDMGTEWKPTDDARGLFEGRDRKTGEVKWTATRVDLVFG-SNSELRALAEVYASDDAKEKFVKDFVAAWTKV 721 (730)
T ss_pred cchhhhhhhhccceeeeccccccceeccccccCceEeeeeEEeEEec-CcHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 88888888762 1 21 14577666 888999999999974 899999999999999
Q ss_pred hcCC
Q 045265 318 GSIN 321 (345)
Q Consensus 318 ~~lg 321 (345)
+++.
T Consensus 722 Mn~D 725 (730)
T COG0376 722 MNLD 725 (730)
T ss_pred hccc
Confidence 9875
No 19
>PTZ00411 transaldolase-like protein; Provisional
Probab=72.85 E-value=33 Score=34.15 Aligned_cols=63 Identities=21% Similarity=0.261 Sum_probs=36.8
Q ss_pred CchhhHHhhhchhhh--hcCCCCcccccCCCCCCCCCCCCCC-CCCC-C---CCCHHHHHHHHHHCCCCc
Q 045265 128 VSCSDILNLATRDAV--HMAGAPSYPVFTGRRDGMTSTKESV-DLPS-P---SISWKESLACFQSKGLDV 190 (345)
Q Consensus 128 VScADilalAar~Av--~~~GGP~~~v~~GR~D~~~s~~~~~-~lP~-p---~~~~~~l~~~F~~~Glt~ 190 (345)
|.|-=.+.|....|+ ..+|-..+..+.||.+...-.+... ..+. . -..+.++.+.|++.|+..
T Consensus 161 I~~N~TlvFS~~QA~aaaeAGa~~ISPfVGRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~g~~T 230 (333)
T PTZ00411 161 IHCNLTLLFSFAQAVACAQAGVTLISPFVGRILDWYKKPEKAESYVGAQDPGVISVTKIYNYYKKHGYKT 230 (333)
T ss_pred CceeEeEecCHHHHHHHHHcCCCEEEeecchHHHhcccccccccccccCCchHHHHHHHHHHHHHcCCCe
Confidence 444444444444443 3458888999999986543222211 2222 1 235678888999988754
No 20
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=69.64 E-value=38 Score=34.40 Aligned_cols=63 Identities=17% Similarity=0.237 Sum_probs=39.1
Q ss_pred CchhhHHhhhchhhh--hcCCCCcccccCCCCCCCCCCCCCC-CCCCCCC----CHHHHHHHHHHCCCCc
Q 045265 128 VSCSDILNLATRDAV--HMAGAPSYPVFTGRRDGMTSTKESV-DLPSPSI----SWKESLACFQSKGLDV 190 (345)
Q Consensus 128 VScADilalAar~Av--~~~GGP~~~v~~GR~D~~~s~~~~~-~lP~p~~----~~~~l~~~F~~~Glt~ 190 (345)
|.|-=.+.+....|+ ..+|-..+..+.||.|...-...+. .+|...+ .+.++.+.|++.|+..
T Consensus 155 I~~n~TlvFS~~QA~aaaeAGa~~ISPfVgRi~dw~~~~~g~~~~~~~~dpGv~~v~~i~~~~~~~~~~T 224 (391)
T PRK12309 155 IHCNLTLLFGFHQAIACAEAGVTLISPFVGRILDWYKKETGRDSYPGAEDPGVQSVTQIYNYYKKFGYKT 224 (391)
T ss_pred CceeeeeecCHHHHHHHHHcCCCEEEeecchhhhhhhhccCCCccccccchHHHHHHHHHHHHHhcCCCc
Confidence 554444555555444 3458889999999988743322222 2443332 4778888999988754
No 21
>TIGR00874 talAB transaldolase. This family includes the majority of known and predicted transaldolase sequences, including E. coli TalA and TalB. It excluded two other families. The first includes E. coli transaldolase-like protein TalC. The second family includes the putative transaldolases of Helicobacter pylori and Mycobacterium tuberculosis.
Probab=63.00 E-value=55 Score=32.33 Aligned_cols=64 Identities=16% Similarity=0.183 Sum_probs=37.4
Q ss_pred CchhhHHhhhchhhh--hcCCCCcccccCCCCCCCCCCCCCC-CC----CCCCCCHHHHHHHHHHCCCCcc
Q 045265 128 VSCSDILNLATRDAV--HMAGAPSYPVFTGRRDGMTSTKESV-DL----PSPSISWKESLACFQSKGLDVQ 191 (345)
Q Consensus 128 VScADilalAar~Av--~~~GGP~~~v~~GR~D~~~s~~~~~-~l----P~p~~~~~~l~~~F~~~Glt~~ 191 (345)
|+|-=.+.|....|+ ..+|-..+..+.||.|-..-...+. .. -++-..+.++.+.|++.|+..+
T Consensus 149 I~vN~TliFS~~Qa~aaa~AGa~~ISPFVgRi~dw~~~~~g~~~~~~~~d~Gv~~v~~i~~~~k~~g~~T~ 219 (317)
T TIGR00874 149 IHCNLTLLFSFVQAIACAEAKVTLISPFVGRILDWYKAATGKKEYSIEEDPGVASVKKIYNYYKKHGYPTE 219 (317)
T ss_pred CceeeeeecCHHHHHHHHHcCCCEEEeecchHhHhhhhccCccccccccCchHHHHHHHHHHHHHcCCCcE
Confidence 443333444444433 3468889999999987632211110 11 1233467888889999998654
No 22
>PRK12346 transaldolase A; Provisional
Probab=58.25 E-value=49 Score=32.68 Aligned_cols=64 Identities=14% Similarity=0.155 Sum_probs=39.4
Q ss_pred CchhhHHhhhchhhh--hcCCCCcccccCCCCCCCCCCCCCC-CCCC----CCCCHHHHHHHHHHCCCCcc
Q 045265 128 VSCSDILNLATRDAV--HMAGAPSYPVFTGRRDGMTSTKESV-DLPS----PSISWKESLACFQSKGLDVQ 191 (345)
Q Consensus 128 VScADilalAar~Av--~~~GGP~~~v~~GR~D~~~s~~~~~-~lP~----p~~~~~~l~~~F~~~Glt~~ 191 (345)
|+|-=.+.|....|+ ..+|-..+..+.||.|...-...+. .++. +-..+.++.+.|++.|+..+
T Consensus 150 I~~n~TliFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~T~ 220 (316)
T PRK12346 150 INCNLTLLFSFAQARACAEAGVFLISPFVGRIYDWYQARKPMDPYVVEEDPGVKSVRNIYDYYKQHRYETI 220 (316)
T ss_pred CceeEEEecCHHHHHHHHHcCCCEEEecccHHHHhhhhccccccccccCCChHHHHHHHHHHHHHcCCCcE
Confidence 555555566555554 3568889999999988643221111 1222 22457788889999887543
No 23
>PF11895 DUF3415: Domain of unknown function (DUF3415); InterPro: IPR024589 Peroxidases are haem-containing enzymes that use hydrogen peroxide as the electron acceptor to catalyse a number of oxidative reactions. Peroxidases are found in bacteria, fungi, plants and animals. Fungal ligninases are extracellular haem enzymes involved in the degradation of lignin. They include lignin peroxidases (LiPs), manganese-dependent peroxidases (MnPs) and versatile peroxidases, which combine the substrate-specificity characteristics of the other two []. In MnP, Mn2+ serves as the reducing substrate []. It is commonly thought that the plant polymer lignin is the second most abundant organic compound on Earth, exceeded only by cellulose. Higher plants synthesise vast quantities of insoluble macromolecules, including lignins. Lignin is an amorphous three-dimensional aromatic biopolymer composed of oxyphenylpropane units. Biodegradation of lignins is slow - it is probable that their decomposition is the rate-limiting step in the biospheric carbon-oxygen cycle, which is mediated almost entirely by the catabolic activities of microorganisms. The white-rot fungi are able extensively to decompose all the important structural components of wood, including both cellulose and lignin. Under the proper environmental conditions, white-rot fungi completely degrade all structural components of lignin, with ultimate formation of CO2 and H2O. The first step in lignin degradation is depolymerisation, catalysed by the LiPs (ligninases). LiPs are secreted, along with hydrogen peroxide (H2O2), by white-rot fungi under conditions of nutrient limitation. The enzymes are not only important in lignin biodegradation, but are also potentially valuable in chemical waste disposal because of their ability to degrade environmental pollutants []. To date, 3D structures have been determined for LiP [] and MnP [] from Phanerochaete chrysosporium (White-rot fungus), and for the fungal peroxidase from Arthromyces ramosus []. All these proteins share the same architecture and consist of 2 all-alpha domains, between which is embedded the haem group. The helical topography of LiPs is nearly identical to that of yeast cytochrome c peroxidase (CCP) [], despite the former having 4 disulphide bonds, which are absent in CCP (MnP has an additional disulphide bond at the C terminus). This uncharacterised C-terminal domain is found in fungal ligninases. It is about 80 amino acids in length and associated with Pfam:PF00141.; PDB: 1B85_B 1B82_A 1B80_A 1YYG_A 1YZP_A 1MNP_A 1MN1_A 1YZR_A 1MN2_A 3M8M_A ....
Probab=49.37 E-value=15 Score=29.03 Aligned_cols=18 Identities=11% Similarity=0.357 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHhhcCCC
Q 045265 305 DFRKALALSMSRMGSINV 322 (345)
Q Consensus 305 ~F~~~Fa~Am~Km~~lgv 322 (345)
...+.|..||.||+.||-
T Consensus 2 ~m~~~F~~am~KlavLG~ 19 (80)
T PF11895_consen 2 KMQSAFKAAMAKLAVLGH 19 (80)
T ss_dssp HHHHHHHHHHHHHCTTTS
T ss_pred hHHHHHHHHHHHHHHhcC
Confidence 356899999999999974
No 24
>PRK05269 transaldolase B; Provisional
Probab=42.88 E-value=1.4e+02 Score=29.46 Aligned_cols=64 Identities=16% Similarity=0.187 Sum_probs=37.9
Q ss_pred CchhhHHhhhchhhh--hcCCCCcccccCCCCCCCCCCCCCC-CC----CCCCCCHHHHHHHHHHCCCCcc
Q 045265 128 VSCSDILNLATRDAV--HMAGAPSYPVFTGRRDGMTSTKESV-DL----PSPSISWKESLACFQSKGLDVQ 191 (345)
Q Consensus 128 VScADilalAar~Av--~~~GGP~~~v~~GR~D~~~s~~~~~-~l----P~p~~~~~~l~~~F~~~Glt~~ 191 (345)
|+|-=.+.|....|+ ..+|-..+..+.||.|...-...+. .. -++-..+.++.+.|++.|+..+
T Consensus 151 I~vn~TlvFs~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~~~Gv~~v~~i~~~~k~~~~~t~ 221 (318)
T PRK05269 151 INCNLTLLFSFAQARACAEAGVFLISPFVGRILDWYKKNTGKKEYAPAEDPGVVSVTKIYNYYKKHGYKTV 221 (318)
T ss_pred CceeEeEecCHHHHHHHHHcCCCEEEeeccHHHHHhhhcccccccCcCCCcHHHHHHHHHHHHHHcCCCce
Confidence 444444444444443 3458888999999988542211110 11 1133457888899999998765
No 25
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=30.41 E-value=79 Score=25.65 Aligned_cols=8 Identities=25% Similarity=0.351 Sum_probs=3.9
Q ss_pred CCCCchHH
Q 045265 1 MGSDPRFV 8 (345)
Q Consensus 1 ~~~~~~~~ 8 (345)
|.|-..++
T Consensus 1 MaSK~~ll 8 (95)
T PF07172_consen 1 MASKAFLL 8 (95)
T ss_pred CchhHHHH
Confidence 55555333
No 26
>KOG0400 consensus 40S ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=29.08 E-value=28 Score=30.11 Aligned_cols=33 Identities=30% Similarity=0.380 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHCCCCccchhh-hcccccccccc
Q 045265 174 ISWKESLACFQSKGLDVQDMVT-LLGAHTMGQTR 206 (345)
Q Consensus 174 ~~~~~l~~~F~~~Glt~~elVa-LsGaHTiG~ah 206 (345)
+++.+.+-.|++|||++.++=+ |--+|-||+++
T Consensus 31 ddvkeqI~K~akKGltpsqIGviLRDshGi~q~r 64 (151)
T KOG0400|consen 31 DDVKEQIYKLAKKGLTPSQIGVILRDSHGIGQVR 64 (151)
T ss_pred HHHHHHHHHHHHcCCChhHceeeeecccCcchhh
Confidence 4566777799999999998754 55999999875
No 27
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=28.97 E-value=73 Score=27.37 Aligned_cols=23 Identities=17% Similarity=0.413 Sum_probs=15.2
Q ss_pred HHHHHHHHCC-CCccchhhhcccc
Q 045265 178 ESLACFQSKG-LDVQDMVTLLGAH 200 (345)
Q Consensus 178 ~l~~~F~~~G-lt~~elVaLsGaH 200 (345)
.+++.=+..| +|..||+++.|+|
T Consensus 16 rIvElVRe~GRiTi~ql~~~TGas 39 (127)
T PF06163_consen 16 RIVELVREHGRITIKQLVAKTGAS 39 (127)
T ss_pred HHHHHHHHcCCccHHHHHHHHCCC
Confidence 4445555555 5788888888775
No 28
>PF14919 MTBP_mid: MDM2-binding
Probab=24.11 E-value=1.1e+02 Score=30.29 Aligned_cols=70 Identities=26% Similarity=0.302 Sum_probs=47.0
Q ss_pred cCCCCCCCCchhHHHHHHHHHHHhhCCCCCchhhHHhhhchhhhhcCCCCcccccCCCCCCCCCCCCCCCCCCCCCCHHH
Q 045265 99 KTAPQNWGLGAFVLIDKIKVVLEQRCPGAVSCSDILNLATRDAVHMAGAPSYPVFTGRRDGMTSTKESVDLPSPSISWKE 178 (345)
Q Consensus 99 ~~~~~N~~l~g~~~I~~iK~~le~~cp~~VScADilalAar~Av~~~GGP~~~v~~GR~D~~~s~~~~~~lP~p~~~~~~ 178 (345)
.+||+-.-|+.+|.++++|++... +--..-+ +-.+|++|+...+.. -.++.+
T Consensus 264 ~eWPER~VLQNlEn~ek~kQK~R~--~~l~~Ss-------------------eqLLG~Kdg~r~s~t-------LLDAkE 315 (342)
T PF14919_consen 264 LEWPERHVLQNLENFEKAKQKMRT--GSLPRSS-------------------EQLLGHKDGQRDSVT-------LLDAKE 315 (342)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHhc--ccCCCCH-------------------HHhcCCCCCCCCCcc-------cccHHH
Confidence 345555556789999999998753 1100112 334889998765443 247899
Q ss_pred HHHHHHHCCCCccchhhh
Q 045265 179 SLACFQSKGLDVQDMVTL 196 (345)
Q Consensus 179 l~~~F~~~Glt~~elVaL 196 (345)
|+..|..-||-.-|+--|
T Consensus 316 LLK~FT~dGlPvgDLQPL 333 (342)
T PF14919_consen 316 LLKYFTSDGLPVGDLQPL 333 (342)
T ss_pred HHhhcCCCCcccCcCccc
Confidence 999999999988876443
No 29
>cd00957 Transaldolase_TalAB Transaldolases including both TalA and TalB. The enzyme catalyses the reversible transfer of a dyhydroxyacetone moiety, derived from fructose-6-phosphate to erythrose-4-phosphate yielding sedoheptulose-7-phosphate and glyceraldehyde-3-phosphate. The catalytic mechanism is similar to other class I aldolases. The enzyme is found in the non-oxidative branch of the pentose phosphate pathway and forms a dimer in solution.
Probab=22.97 E-value=67 Score=31.67 Aligned_cols=66 Identities=20% Similarity=0.208 Sum_probs=39.3
Q ss_pred CchhhHHhhhchhhh--hcCCCCcccccCCCCCCCCCCCCCC-CCCC----CCCCHHHHHHHHHHCCCCccch
Q 045265 128 VSCSDILNLATRDAV--HMAGAPSYPVFTGRRDGMTSTKESV-DLPS----PSISWKESLACFQSKGLDVQDM 193 (345)
Q Consensus 128 VScADilalAar~Av--~~~GGP~~~v~~GR~D~~~s~~~~~-~lP~----p~~~~~~l~~~F~~~Glt~~el 193 (345)
|+|-=.+.|....|+ ..+|-..+..+.||.|-..-...+. ..+. +-..+.++.+.|++.|+..+=|
T Consensus 149 I~vn~TlvFS~~Qa~~aa~AGa~~ISPfVgRi~d~~~~~~~~~~~~~~~d~Gv~~v~~i~~~~~~~~~~T~vm 221 (313)
T cd00957 149 IHCNLTLLFSFAQAVACAEAGVTLISPFVGRILDWYKKHSGDKAYTAEEDPGVASVKKIYNYYKKFGYKTKVM 221 (313)
T ss_pred CceeeeeecCHHHHHHHHHcCCCEEEeecchHHHhhhhccccccCCccCCcHHHHHHHHHHHHHHcCCCcEEE
Confidence 555545555555444 3458788899999987542211110 1111 2245788888999999875433
No 30
>PRK01844 hypothetical protein; Provisional
Probab=22.20 E-value=1.7e+02 Score=22.75 Aligned_cols=27 Identities=11% Similarity=0.328 Sum_probs=22.8
Q ss_pred HHHHHHHHHhcCCCccchhhhhhhccc
Q 045265 55 IRHQVELFYKHDKTIAPKLLRLLYSDC 81 (345)
Q Consensus 55 V~~~v~~~~~~d~~~a~~llRL~FHDc 81 (345)
-|+.+++.++++|.+-...||..|--.
T Consensus 25 ark~~~k~lk~NPpine~mir~Mm~QM 51 (72)
T PRK01844 25 ARKYMMNYLQKNPPINEQMLKMMMMQM 51 (72)
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHh
Confidence 677888999999999999999887644
No 31
>PF08782 c-SKI_SMAD_bind: c-SKI Smad4 binding domain; InterPro: IPR014890 c-SKI is an oncoprotein that inhibits TGF-beta signalling through interaction with Smad proteins []. This protein binds to Smad4 [].; GO: 0005634 nucleus; PDB: 1MR1_C.
Probab=20.45 E-value=32 Score=28.16 Aligned_cols=15 Identities=40% Similarity=1.143 Sum_probs=9.6
Q ss_pred hhccccCCCCCceeec
Q 045265 77 LYSDCFVTGCDASILL 92 (345)
Q Consensus 77 ~FHDcfv~GcDgSill 92 (345)
.+|+|| +||.|+..-
T Consensus 4 V~HeC~-g~c~G~f~P 18 (96)
T PF08782_consen 4 VYHECF-GGCRGSFIP 18 (96)
T ss_dssp EEE-ST-T-EEEEE-G
T ss_pred eEEeec-CccceEech
Confidence 479998 799998864
Done!