BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045267
(482 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VCE|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VCH|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
pdb|2VG8|A Chain A, Characterization And Engineering Of The Bifunctional N-
And O-Glucosyltransferase Involved In Xenobiotic
Metabolism In Plants
Length = 480
Score = 573 bits (1478), Expect = e-164, Method: Compositional matrix adjust.
Identities = 284/476 (59%), Positives = 354/476 (74%), Gaps = 11/476 (2%)
Query: 5 LQAQAAPHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPPSEAQKSTLESLP 64
++ PH+ ++PSPGMGHLIPL+EFAKRLVH H VTF I +GPPS+AQ++ L+SLP
Sbjct: 1 MEESKTPHVAIIPSPGMGHLIPLVEFAKRLVHLHGLTVTFVIAGEGPPSKAQRTVLDSLP 60
Query: 65 SSINSVFLP-VSLNDVAEDARAETVISLTVLRSLPCLRQEXXXXXXXXXX-XXXXXXXFG 122
SSI+SVFLP V L D++ R E+ ISLTV RS P LR+ FG
Sbjct: 61 SSISSVFLPPVDLTDLSSSTRIESRISLTVTRSNPELRKVFDSFVEGGRLPTALVVDLFG 120
Query: 123 TDAFDVAQEFNISPYIFYPSTAMCLSLFLHLEKLDQMVPRDCEYRDMSEPVQIPGCIPVH 182
TDAFDVA EF++ PYIFYP+TA LS FLHL KLD+ V CE+R+++EP+ +PGC+PV
Sbjct: 121 TDAFDVAVEFHVPPYIFYPTTANVLSFFLHLPKLDETV--SCEFRELTEPLMLPGCVPVA 178
Query: 183 GGYLLDPVQDRKNEAYRWVLHHAKRYKLAEGIIVNSFTDLEGGALKALQHQDEPG--KPP 240
G LDP QDRK++AY+W+LH+ KRYK AEGI+VN+F +LE A+KALQ EPG KPP
Sbjct: 179 GKDFLDPAQDRKDDAYKWLLHNTKRYKEAEGILVNTFFELEPNAIKALQ---EPGLDKPP 235
Query: 241 VYPVGPLVKTGSTAESKNEG--CLKWLDDQPXXXXXXXXXXXXXTLSCEQLNELALGLEM 298
VYPVGPLV G + E CLKWLD+QP TL+CEQLNELALGL
Sbjct: 236 VYPVGPLVNIGKQEAKQTEESECLKWLDNQPLGSVLYVSFGSGGTLTCEQLNELALGLAD 295
Query: 299 SEQRFLWVVRSPNNAANSTFFSVNSHKDPYDFLPKGFLDRTKGRGMLVPSWAPQAQVLSH 358
SEQRFLWV+RSP+ ANS++F +S DP FLP GFL+RTK RG ++P WAPQAQVL+H
Sbjct: 296 SEQRFLWVIRSPSGIANSSYFDSHSQTDPLTFLPPGFLERTKKRGFVIPFWAPQAQVLAH 355
Query: 359 GSTGGFLCHCGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENGIVG 418
STGGFL HCGWNS LESVV+G+PLIAWPLYAEQKMNAV+L+ED++ ALRP+A ++G+V
Sbjct: 356 PSTGGFLTHCGWNSTLESVVSGIPLIAWPLYAEQKMNAVLLSEDIRAALRPRAGDDGLVR 415
Query: 419 RDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKWNNNE 474
R+E+A+VVK LMEGE+GK VRNKMK+LK+AA VL ++G+STKALS +A KW ++
Sbjct: 416 REEVARVVKGLMEGEEGKGVRNKMKELKEAACRVLKDDGTSTKALSLVALKWKAHK 471
>pdb|2ACW|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
pdb|2ACW|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed
With Udp-Glucose
Length = 465
Score = 195 bits (496), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 151/469 (32%), Positives = 229/469 (48%), Gaps = 38/469 (8%)
Query: 13 IVLLPSPGMGHLIPLIEFAKRLVH--RHHFLVTFFIPSDGPP--SEAQKSTLESLPSSIN 68
++ +P+PG+GHL +EFAK L + ++ ++ F I G P KS L S P I
Sbjct: 12 LIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQPQ-IQ 70
Query: 69 SVFLPVSLNDVAEDARAETVISLTVLRSLPCLRQEXXXXXXXXXXXXXXXXXFGTDAFDV 128
+ LP E ++ LT L SL + F DV
Sbjct: 71 LIDLPEVEPPPQELLKSPEFYILTFLESLIPHVKATIKTILSNKVVGLVLDFFCVSMIDV 130
Query: 129 AQEFNISPYIFYPSTAMCLSLFLHLEKLDQMVPRDCEYRDMSEPVQIPGCIPVHGGYLLD 188
EF I Y+F S LSL L L+ D RD + + IPG +L
Sbjct: 131 GNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRD-HQLLNIPGISNQVPSNVLP 189
Query: 189 PVQDRKNEAYRWVLHHAKRYKLAEGIIVNSFTDLEGGALKALQHQDEPGKPPVYPVGPLV 248
K+ Y A+R++ +GIIVN+F+DLE ++ AL DE PP+Y VGPL+
Sbjct: 190 DACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEK-IPPIYAVGPLL 248
Query: 249 KTGST-----AESKNEGCLKWLDDQPXXXXXXX-XXXXXXTLSCEQLNELALGLEMSEQR 302
+++++ LKWLD+QP + Q+ E+ALGL+ S R
Sbjct: 249 DLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVR 308
Query: 303 FLWVVRSPNNAANSTFFSVNSHKDPYDFLPKGFLD--RTKGRGMLVPSWAPQAQVLSHGS 360
FLW +N+A F P+GFL+ +G+GM+ WAPQ +VL+H +
Sbjct: 309 FLW-----SNSAEKKVF------------PEGFLEWMELEGKGMIC-GWAPQVEVLAHKA 350
Query: 361 TGGFLCHCGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTED--VKLALRPKANENG-IV 417
GGF+ HCGWNS+LES+ GVP++ WP+YAEQ++NA L ++ V L LR + +V
Sbjct: 351 IGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVV 410
Query: 418 GRDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQL 466
+EI K +K LM+ + V K++++K+ + + + GSS ++ +L
Sbjct: 411 AAEEIEKGLKDLMDKDS--IVHKKVQEMKEMSRNAVVDGGSSLISVGKL 457
>pdb|2ACV|A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1
pdb|2ACV|B Chain B, Crystal Structure Of Medicago Truncatula Ugt71g1
Length = 463
Score = 195 bits (495), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 151/469 (32%), Positives = 229/469 (48%), Gaps = 38/469 (8%)
Query: 13 IVLLPSPGMGHLIPLIEFAKRLVH--RHHFLVTFFIPSDGPP--SEAQKSTLESLPSSIN 68
++ +P+PG+GHL +EFAK L + ++ ++ F I G P KS L S P I
Sbjct: 12 LIFIPAPGIGHLASALEFAKLLTNHDKNLYITVFCIKFPGMPFADSYIKSVLASQPQ-IQ 70
Query: 69 SVFLPVSLNDVAEDARAETVISLTVLRSLPCLRQEXXXXXXXXXXXXXXXXXFGTDAFDV 128
+ LP E ++ LT L SL + F DV
Sbjct: 71 LIDLPEVEPPPQELLKSPEFYILTFLESLIPHVKATIKTILSNKVVGLVLDFFCVSMIDV 130
Query: 129 AQEFNISPYIFYPSTAMCLSLFLHLEKLDQMVPRDCEYRDMSEPVQIPGCIPVHGGYLLD 188
EF I Y+F S LSL L L+ D RD + + IPG +L
Sbjct: 131 GNEFGIPSYLFLTSNVGFLSLMLSLKNRQIEEVFDDSDRD-HQLLNIPGISNQVPSNVLP 189
Query: 189 PVQDRKNEAYRWVLHHAKRYKLAEGIIVNSFTDLEGGALKALQHQDEPGKPPVYPVGPLV 248
K+ Y A+R++ +GIIVN+F+DLE ++ AL DE PP+Y VGPL+
Sbjct: 190 DACFNKDGGYIAYYKLAERFRDTKGIIVNTFSDLEQSSIDALYDHDEK-IPPIYAVGPLL 248
Query: 249 KTGST-----AESKNEGCLKWLDDQPXXXXXXX-XXXXXXTLSCEQLNELALGLEMSEQR 302
+++++ LKWLD+QP + Q+ E+ALGL+ S R
Sbjct: 249 DLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQIREIALGLKHSGVR 308
Query: 303 FLWVVRSPNNAANSTFFSVNSHKDPYDFLPKGFLD--RTKGRGMLVPSWAPQAQVLSHGS 360
FLW +N+A F P+GFL+ +G+GM+ WAPQ +VL+H +
Sbjct: 309 FLW-----SNSAEKKVF------------PEGFLEWMELEGKGMIC-GWAPQVEVLAHKA 350
Query: 361 TGGFLCHCGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTED--VKLALRPKANENG-IV 417
GGF+ HCGWNS+LES+ GVP++ WP+YAEQ++NA L ++ V L LR + +V
Sbjct: 351 IGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDYRKGSDVV 410
Query: 418 GRDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQL 466
+EI K +K LM+ + V K++++K+ + + + GSS ++ +L
Sbjct: 411 AAEEIEKGLKDLMDKDS--IVHKKVQEMKEMSRNAVVDGGSSLISVGKL 457
>pdb|2PQ6|A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights
Into The Structural Basis Of A Multifunctional (Iso)
Flavonoid Glycosyltransferase
Length = 482
Score = 149 bits (377), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 129/519 (24%), Positives = 209/519 (40%), Gaps = 109/519 (21%)
Query: 7 AQAAPHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTF---------FIPSDGP------ 51
A PH+V++P P GH+ PL + AK L+H F +TF + S GP
Sbjct: 5 ANRKPHVVMIPYPVQGHINPLFKLAK-LLHLRGFHITFVNTEYNHKRLLKSRGPKAFDGF 63
Query: 52 -------------PSEAQKSTLESLPSSINSV---FLPVSLNDVAEDARAETVISLTVLR 95
P E + +P+ SV FL + + V +T L
Sbjct: 64 TDFNFESIPDGLTPMEGDGDVSQDVPTLCQSVRKNFLKPYCELLTRLNHSTNVPPVTCLV 123
Query: 96 SLPCLRQEXXXXXXXXXXXXXXXXXFGTDAFDVAQEFNISPYIFYPSTAMCLSLFLHLEK 155
S C+ + A+EF + +++ S+A L +H
Sbjct: 124 SDCCM----------------------SFTIQAAEEFELPNVLYFSSSACSLLNVMHFRS 161
Query: 156 LDQ--MVPRDCEYRDMSEPVQIPGC-------IPVHGGYLLDPVQDR------KNEAYRW 200
+ ++P ++D E GC IP + L + D + +
Sbjct: 162 FVERGIIP----FKD--ESYLTNGCLETKVDWIPGLKNFRLKDIVDFIRTTNPNDIMLEF 215
Query: 201 VLHHAKRYKLAEGIIVNSFTDLEGGALKALQHQDEPGKPPVYPVGPL------------- 247
+ A R I++N+F +LE + AL P +YP+GPL
Sbjct: 216 FIEVADRVNKDTTILLNTFNELESDVINALSST----IPSIYPIGPLPSLLKQTPQIHQL 271
Query: 248 VKTGSTAESKNEGCLKWLDDQPXXXXXXXXXXXXXTLSCEQLNELALGLEMSEQRFLWVV 307
S ++ CL WL+ + ++ EQL E A GL ++ FLW++
Sbjct: 272 DSLDSNLWKEDTECLDWLESKEPGSVVYVNFGSTTVMTPEQLLEFAWGLANCKKSFLWII 331
Query: 308 RSPNNAANSTFFSVNSHKDPYDFLPKGFLDRTKGRGMLVPSWAPQAQVLSHGSTGGFLCH 367
R S FS F + RG L+ SW PQ +VL+H S GGFL H
Sbjct: 332 RPDLVIGGSVIFS------------SEFTNEIADRG-LIASWCPQDKVLNHPSIGGFLTH 378
Query: 368 CGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENGIVGRDEIAKVVK 427
CGWNS ES+ GVP++ WP +A+Q + + + ++ + N V R+E+AK++
Sbjct: 379 CGWNSTTESICAGVPMLCWPFFADQPTDCRFICNEWEIGMEIDTN----VKREELAKLIN 434
Query: 428 ALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQL 466
++ G++GK+++ K +LK A G S L+++
Sbjct: 435 EVIAGDKGKKMKQKAMELKKKAEENTRPGGCSYMNLNKV 473
>pdb|3HBF|A Chain A, Structure Of Ugt78g1 Complexed With Myricetin And Udp
pdb|3HBJ|A Chain A, Structure Of Ugt78g1 Complexed With Udp
Length = 454
Score = 131 bits (329), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 75/224 (33%), Positives = 114/224 (50%), Gaps = 21/224 (9%)
Query: 244 VGPL-VKTGSTAESKNEGCLKWLDDQPXXXXXXXXXXXXXTLSCEQLNELALGLEMSEQR 302
VGP + T S GCL+WLD T +L LA LE
Sbjct: 245 VGPFNLTTPQRKVSDEHGCLEWLDQHENSSVVYISFGSVVTPPPHELTALAESLEECGFP 304
Query: 303 FLWVVRSPNNAANSTFFSVNSHKDPYDFLPKGFLDRTKGRGMLVPSWAPQAQVLSHGSTG 362
F+W R DP + LPKGFL+RTK +G +V +WAPQ ++L H S G
Sbjct: 305 FIWSFRG----------------DPKEKLPKGFLERTKTKGKIV-AWAPQVEILKHSSVG 347
Query: 363 GFLCHCGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENGIVGRDEI 422
FL H GWNSVLE +V GVP+I+ P + +Q +N ++ +++ + +NG++ ++ I
Sbjct: 348 VFLTHSGWNSVLECIVGGVPMISRPFFGDQGLNTILTESVLEIGV---GVDNGVLTKESI 404
Query: 423 AKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQL 466
K ++ M E+G +R K+ LK++A + +NG+S + L
Sbjct: 405 KKALELTMSSEKGGIMRQKIVKLKESAFKAVEQNGTSAMDFTTL 448
>pdb|2C1X|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C1Z|A Chain A, Structure And Activity Of A Flavonoid 3-O
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
pdb|2C9Z|A Chain A, Structure And Activity Of A Flavonoid 3-0
Glucosyltransferase Reveals The Basis For Plant Natural
Product Modification
Length = 456
Score = 125 bits (314), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 94/352 (26%), Positives = 165/352 (46%), Gaps = 31/352 (8%)
Query: 125 AFDVAQEFNISPYIFYPSTAMCLSLFLHLEKLDQMVP-RDCEYRDMSEPVQIPGCIPVHG 183
A D+A E ++ F+ + LS ++++++ + + + R+ IPG V
Sbjct: 125 AADMAAEMGVAWLPFWTAGPNSLSTHVYIDEIREKIGVSGIQGREDELLNFIPGMSKVRF 184
Query: 184 GYLLDP-VQDRKNEAYRWVLHH-AKRYKLAEGIIVNSFTDLEGGALKALQHQDEPGKPPV 241
L + V N + +LH + A + +NSF +L+ L+ + +
Sbjct: 185 RDLQEGIVFGNLNSLFSRMLHRMGQVLPKATAVFINSFEELDDSLTNDLKSKLKT----Y 240
Query: 242 YPVGPL-VKTGSTAESKNEGCLKWLDDQPXXXXXXXXXXXXXTLSCEQLNELALGLEMSE 300
+GP + T GCL+WL ++ T ++ L+ LE S
Sbjct: 241 LNIGPFNLITPPPVVPNTTGCLQWLKERKPTSVVYISFGTVTTPPPAEVVALSEALEASR 300
Query: 301 QRFLWVVRSPNNAANSTFFSVNSHKDPYDFLPKGFLDRTKGRGMLVPSWAPQAQVLSHGS 360
F+W +R LP+GFL++T+G GM+VP WAPQA+VL+H +
Sbjct: 301 VPFIWSLRDKARV----------------HLPEGFLEKTRGYGMVVP-WAPQAEVLAHEA 343
Query: 361 TGGFLCHCGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENGIVGRD 420
G F+ HCGWNS+ ESV GVPLI P + +Q++N ++ + +++ +R E G+ +
Sbjct: 344 VGAFVTHCGWNSLWESVAGGVPLICRPFFGDQRLNGRMVEDVLEIGVR---IEGGVFTKS 400
Query: 421 EIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTK---ALSQLASK 469
+ ++ E+GK++R ++ L++ A + GSST+ L L SK
Sbjct: 401 GLMSCFDQILSQEKGKKLRENLRALRETADRAVGPKGSSTENFITLVDLVSK 452
>pdb|2O6L|A Chain A, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
pdb|2O6L|B Chain B, Crystal Structure Of The Udp-Glucuronic Acid Binding
Domain Of The Human Drug Metabolizing
Udp-Glucuronosyltransferase 2b7
Length = 170
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 31/57 (54%)
Query: 339 TKGRGMLVPSWAPQAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAWPLYAEQKMN 395
T G + W PQ +L H T F+ H G N + E++ +G+P + PL+A+Q N
Sbjct: 65 TLGLNTRLYKWIPQNDLLGHPKTRAFITHGGANGIYEAIYHGIPXVGIPLFADQPDN 121
>pdb|2IYA|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYA|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 424
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%), Gaps = 2/56 (3%)
Query: 346 VPSWAPQAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTE 401
V W PQ +L+ S F+ H G S +E++ N VP++A P AEQ MNA + E
Sbjct: 309 VHQWVPQLDILTKASA--FITHAGMGSTMEALSNAVPMVAVPQIAEQTMNAERIVE 362
>pdb|2IYF|A Chain A, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
pdb|2IYF|B Chain B, The Crystal Structure Of Macrolide Glycosyltransferases: A
Blueprint For Antibiotic Engineering
Length = 430
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 346 VPSWAPQAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAWPLYAEQKMNAVIL 399
V W PQ +L F+ H G E + P+IA P +Q NA +L
Sbjct: 287 VHDWVPQLAILRQADL--FVTHAGAGGSQEGLATATPMIAVPQAVDQFGNADML 338
>pdb|1E7P|A Chain A, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|D Chain D, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|2BS3|A Chain A, Glu C180-> Gln Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS3|D Chain D, Glu C180-> Gln Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS4|A Chain A, Glu C180-> Ile Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|2BS4|D Chain D, Glu C180-> Ile Variant Quinol:fumarate Reductase From
Wolinella Succinogenes
pdb|1E7P|G Chain G, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|1E7P|J Chain J, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 656
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 9/98 (9%)
Query: 369 GWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENGIVGRDEIAKVVKA 428
G NSV E+VV G +I +AE N ++ L K E + G++ K +
Sbjct: 406 GGNSVSEAVVAG--MIVGEYFAEHCAN-------TQVDLETKTLEKFVKGQEAYMKSLVE 456
Query: 429 LMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQL 466
E +++N+MKD+ D + + KA+ +L
Sbjct: 457 SKGTEDVFKIKNRMKDVMDDNVGIFRDGPHLEKAVKEL 494
>pdb|2BS2|A Chain A, Quinol:fumarate Reductase From Wolinella Succinogenes
pdb|2BS2|D Chain D, Quinol:fumarate Reductase From Wolinella Succinogenes
Length = 660
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 9/98 (9%)
Query: 369 GWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENGIVGRDEIAKVVKA 428
G NSV E+VV G +I +AE N ++ L K E + G++ K +
Sbjct: 406 GGNSVSEAVVAG--MIVGEYFAEHCAN-------TQVDLETKTLEKFVKGQEAYMKSLVE 456
Query: 429 LMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQL 466
E +++N+MKD+ D + + KA+ +L
Sbjct: 457 SKGTEDVFKIKNRMKDVMDDNVGIFRDGPHLEKAVKEL 494
>pdb|1QLB|A Chain A, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
pdb|1QLB|D Chain D, Respiratory Complex Ii-Like Fumarate Reductase From
Wolinella Succinogenes
Length = 656
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 46/107 (42%), Gaps = 12/107 (11%)
Query: 369 GWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENGIVGRDEIAKVVKA 428
G NSV E+VV G +I +AE N ++ L K E + G++ K +
Sbjct: 406 GGNSVSEAVVAG--MIVGEYFAEHCAN-------TQVDLETKTLEKFVKGQEAYMKSLVE 456
Query: 429 LMEGEQGKEVRNKMKDLKDAAAAVLSEN---GSSTKALSQLASKWNN 472
E +++N+MKD+ D + + S K L +L K N
Sbjct: 457 SKGTEDVFKIKNRMKDVMDDNVGIFRDGPHLEKSVKELEELYKKSKN 503
>pdb|3IA7|A Chain A, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
pdb|3IA7|B Chain B, Crystal Structure Of Calg4, The Calicheamicin
Glycosyltransferase
Length = 402
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 349 WAPQAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAWPLYAEQ 392
W P VL+H L H +VLE+ GVPL+ P +A +
Sbjct: 288 WIPFHSVLAHARAC--LTHGTTGAVLEAFAAGVPLVLVPHFATE 329
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,843,644
Number of Sequences: 62578
Number of extensions: 548437
Number of successful extensions: 1250
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1210
Number of HSP's gapped (non-prelim): 22
length of query: 482
length of database: 14,973,337
effective HSP length: 103
effective length of query: 379
effective length of database: 8,527,803
effective search space: 3232037337
effective search space used: 3232037337
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)