Query 045267
Match_columns 482
No_of_seqs 128 out of 1227
Neff 9.4
Searched_HMMs 46136
Date Fri Mar 29 11:31:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045267.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045267hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02992 coniferyl-alcohol glu 100.0 8.9E-64 1.9E-68 504.9 41.8 454 10-473 5-470 (481)
2 PLN03015 UDP-glucosyl transfer 100.0 5.4E-63 1.2E-67 496.3 42.4 455 8-470 1-466 (470)
3 PLN02208 glycosyltransferase f 100.0 5.9E-63 1.3E-67 497.3 41.0 425 10-473 4-440 (442)
4 PLN02863 UDP-glucoronosyl/UDP- 100.0 8.6E-63 1.9E-67 500.7 42.0 445 9-475 8-474 (477)
5 PLN00164 glucosyltransferase; 100.0 1.6E-62 3.5E-67 500.3 43.1 455 8-474 1-475 (480)
6 PLN02207 UDP-glycosyltransfera 100.0 3.7E-62 8E-67 492.2 43.2 443 8-473 1-466 (468)
7 PLN02410 UDP-glucoronosyl/UDP- 100.0 5.9E-62 1.3E-66 491.3 44.5 435 8-473 5-451 (451)
8 PLN02173 UDP-glucosyl transfer 100.0 6.9E-62 1.5E-66 488.5 42.7 419 10-471 5-447 (449)
9 PLN02670 transferase, transfer 100.0 3.3E-62 7.2E-67 493.1 40.5 441 9-474 5-467 (472)
10 PLN02210 UDP-glucosyl transfer 100.0 1.7E-61 3.7E-66 489.8 41.6 429 10-471 8-454 (456)
11 PLN03004 UDP-glycosyltransfera 100.0 1E-61 2.2E-66 487.6 38.8 437 8-461 1-450 (451)
12 PLN02764 glycosyltransferase f 100.0 3.7E-61 8E-66 481.7 41.8 431 9-477 4-450 (453)
13 PLN02562 UDP-glycosyltransfera 100.0 5.3E-61 1.1E-65 485.7 42.3 429 10-471 6-448 (448)
14 PLN02555 limonoid glucosyltran 100.0 6.1E-61 1.3E-65 485.6 41.1 443 10-475 7-472 (480)
15 PLN00414 glycosyltransferase f 100.0 7.7E-61 1.7E-65 482.5 40.7 426 10-476 4-444 (446)
16 PLN02554 UDP-glycosyltransfera 100.0 1.2E-60 2.7E-65 488.4 42.5 450 10-474 2-480 (481)
17 PLN02534 UDP-glycosyltransfera 100.0 1.3E-60 2.7E-65 483.9 41.5 442 10-473 8-487 (491)
18 PLN03007 UDP-glucosyltransfera 100.0 2.6E-60 5.6E-65 486.6 42.9 443 10-473 5-481 (482)
19 PLN02152 indole-3-acetate beta 100.0 6.7E-60 1.5E-64 474.9 40.6 432 8-470 1-454 (455)
20 PLN02448 UDP-glycosyltransfera 100.0 2.1E-59 4.5E-64 477.7 41.8 433 7-472 7-457 (459)
21 PLN02167 UDP-glycosyltransfera 100.0 2.1E-59 4.5E-64 478.6 41.7 447 8-474 1-474 (475)
22 PHA03392 egt ecdysteroid UDP-g 100.0 3.4E-47 7.4E-52 390.4 35.3 395 12-473 22-468 (507)
23 PF00201 UDPGT: UDP-glucoronos 100.0 7.5E-49 1.6E-53 408.8 8.9 380 12-451 2-425 (500)
24 TIGR01426 MGT glycosyltransfer 100.0 3.7E-42 8E-47 347.5 31.1 385 16-471 1-391 (392)
25 cd03784 GT1_Gtf_like This fami 100.0 1.9E-42 4.1E-47 351.0 26.7 381 11-467 1-399 (401)
26 COG1819 Glycosyl transferases, 100.0 1.3E-39 2.8E-44 325.8 25.1 390 10-473 1-402 (406)
27 KOG1192 UDP-glucuronosyl and U 100.0 1.2E-38 2.6E-43 332.1 23.8 391 10-451 5-438 (496)
28 PRK12446 undecaprenyldiphospho 99.9 2.9E-25 6.3E-30 219.4 28.2 323 11-444 2-335 (352)
29 PF13528 Glyco_trans_1_3: Glyc 99.9 1.1E-23 2.3E-28 206.9 26.0 308 11-429 1-317 (318)
30 COG0707 MurG UDP-N-acetylgluco 99.9 4.6E-21 9.9E-26 187.5 29.5 315 11-433 1-325 (357)
31 TIGR00661 MJ1255 conserved hyp 99.9 3.1E-21 6.7E-26 189.3 25.4 306 12-433 1-315 (321)
32 PRK00726 murG undecaprenyldiph 99.8 3.3E-18 7.1E-23 170.8 29.7 343 11-471 2-356 (357)
33 cd03785 GT1_MurG MurG is an N- 99.8 1.6E-16 3.4E-21 158.2 27.5 312 12-433 1-325 (350)
34 TIGR00215 lpxB lipid-A-disacch 99.7 3.1E-16 6.7E-21 157.4 20.1 347 11-468 6-384 (385)
35 COG4671 Predicted glycosyl tra 99.7 5.9E-15 1.3E-19 137.9 25.9 342 7-433 6-366 (400)
36 TIGR01133 murG undecaprenyldip 99.7 8E-15 1.7E-19 145.8 27.6 77 351-433 243-322 (348)
37 PRK13609 diacylglycerol glucos 99.7 8.6E-15 1.9E-19 147.4 22.1 173 270-479 201-378 (380)
38 PRK00025 lpxB lipid-A-disaccha 99.6 1.9E-14 4.1E-19 144.9 21.0 108 352-471 255-376 (380)
39 TIGR03590 PseG pseudaminic aci 99.6 4.7E-14 1E-18 135.1 16.8 104 272-398 171-278 (279)
40 PF04101 Glyco_tran_28_C: Glyc 99.5 1.6E-15 3.5E-20 134.3 0.4 86 342-433 55-145 (167)
41 PRK13608 diacylglycerol glucos 99.5 2.2E-11 4.7E-16 122.9 27.9 165 270-471 201-370 (391)
42 PLN02605 monogalactosyldiacylg 99.4 9.4E-12 2E-16 125.3 20.0 112 342-470 265-379 (382)
43 TIGR03492 conserved hypothetic 99.4 3.7E-11 8E-16 120.8 21.8 108 344-468 281-394 (396)
44 PF03033 Glyco_transf_28: Glyc 99.3 2.6E-12 5.7E-17 109.9 4.4 123 13-145 1-133 (139)
45 cd03814 GT1_like_2 This family 99.2 1.2E-08 2.6E-13 101.2 28.1 111 341-470 246-363 (364)
46 PLN02871 UDP-sulfoquinovose:DA 99.2 2.9E-08 6.2E-13 102.8 29.2 140 273-444 264-413 (465)
47 cd03800 GT1_Sucrose_synthase T 99.1 7.4E-08 1.6E-12 97.2 28.7 81 341-433 282-369 (398)
48 COG3980 spsG Spore coat polysa 99.1 9.2E-09 2E-13 94.0 19.0 143 271-444 158-302 (318)
49 cd03818 GT1_ExpC_like This fam 99.1 3.7E-07 8E-12 92.5 33.1 83 341-433 280-367 (396)
50 cd03823 GT1_ExpE7_like This fa 99.1 2.4E-07 5.3E-12 91.5 30.1 81 341-433 242-330 (359)
51 cd03794 GT1_wbuB_like This fam 99.1 1.2E-07 2.6E-12 94.5 27.2 82 340-433 273-366 (394)
52 PRK05749 3-deoxy-D-manno-octul 99.1 4.6E-08 1E-12 100.0 24.1 72 353-433 314-389 (425)
53 cd03801 GT1_YqgM_like This fam 99.0 3.1E-07 6.8E-12 90.4 28.9 112 340-470 254-373 (374)
54 cd03817 GT1_UGDG_like This fam 99.0 3E-07 6.5E-12 91.2 27.3 80 341-433 258-344 (374)
55 PRK10307 putative glycosyl tra 99.0 1.1E-06 2.3E-11 89.6 30.8 116 342-474 284-409 (412)
56 cd03808 GT1_cap1E_like This fa 99.0 2.4E-06 5.2E-11 84.0 31.7 81 341-433 245-330 (359)
57 cd03825 GT1_wcfI_like This fam 99.0 5.4E-07 1.2E-11 89.7 27.2 113 342-472 244-364 (365)
58 TIGR00236 wecB UDP-N-acetylglu 99.0 5.8E-08 1.3E-12 97.2 20.0 106 342-468 255-363 (365)
59 cd04962 GT1_like_5 This family 99.0 1.3E-06 2.8E-11 87.3 29.5 112 341-471 252-369 (371)
60 cd03816 GT1_ALG1_like This fam 98.9 8.7E-07 1.9E-11 90.3 28.3 91 342-446 294-399 (415)
61 cd03786 GT1_UDP-GlcNAc_2-Epime 98.9 4.1E-08 8.9E-13 98.1 17.9 131 271-433 198-338 (363)
62 cd03798 GT1_wlbH_like This fam 98.9 2.8E-06 6E-11 84.0 29.2 111 341-471 258-375 (377)
63 cd03795 GT1_like_4 This family 98.9 1.1E-06 2.5E-11 87.0 25.6 131 273-433 192-333 (357)
64 cd03820 GT1_amsD_like This fam 98.9 2.8E-06 6E-11 83.1 27.7 81 341-433 234-320 (348)
65 cd03796 GT1_PIG-A_like This fa 98.8 4.2E-06 9.1E-11 84.8 28.3 114 341-474 249-369 (398)
66 PF04007 DUF354: Protein of un 98.8 8.1E-06 1.8E-10 79.5 27.5 295 19-430 8-308 (335)
67 cd03805 GT1_ALG2_like This fam 98.8 3.1E-05 6.6E-10 78.2 31.5 80 341-433 279-365 (392)
68 PRK14089 ipid-A-disaccharide s 98.7 1.9E-06 4E-11 84.6 21.4 159 272-468 168-346 (347)
69 cd03821 GT1_Bme6_like This fam 98.7 1.7E-05 3.7E-10 78.5 28.6 81 341-433 261-346 (375)
70 TIGR03449 mycothiol_MshA UDP-N 98.7 3.8E-05 8.1E-10 78.0 31.0 112 341-472 282-401 (405)
71 TIGR02472 sucr_P_syn_N sucrose 98.7 3.2E-05 7E-10 79.4 30.7 112 341-470 316-438 (439)
72 cd03822 GT1_ecORF704_like This 98.7 1.7E-05 3.7E-10 78.6 27.5 109 341-469 246-364 (366)
73 cd03811 GT1_WabH_like This fam 98.6 9.2E-06 2E-10 79.5 23.0 81 341-433 245-333 (353)
74 cd03799 GT1_amsK_like This is 98.6 3.8E-05 8.3E-10 76.0 27.4 81 341-433 235-328 (355)
75 cd03802 GT1_AviGT4_like This f 98.6 2.7E-05 5.8E-10 76.5 25.6 105 341-469 223-333 (335)
76 cd05844 GT1_like_7 Glycosyltra 98.6 5E-05 1.1E-09 75.7 27.5 81 341-433 244-337 (367)
77 PRK09922 UDP-D-galactose:(gluc 98.6 1.7E-05 3.7E-10 79.2 23.9 145 273-447 181-342 (359)
78 cd03819 GT1_WavL_like This fam 98.6 7.7E-05 1.7E-09 73.9 27.7 96 341-446 245-346 (355)
79 TIGR03087 stp1 sugar transfera 98.6 8.4E-06 1.8E-10 82.6 20.8 111 340-470 278-394 (397)
80 COG1519 KdtA 3-deoxy-D-manno-o 98.5 4.9E-05 1.1E-09 74.4 23.9 98 343-450 301-405 (419)
81 TIGR03568 NeuC_NnaA UDP-N-acet 98.5 3.1E-05 6.6E-10 77.4 22.6 129 271-430 201-337 (365)
82 TIGR02468 sucrsPsyn_pln sucros 98.4 0.00038 8.2E-09 76.7 30.1 94 341-444 547-650 (1050)
83 cd03807 GT1_WbnK_like This fam 98.4 0.00045 9.7E-09 68.0 28.7 108 342-469 251-363 (365)
84 KOG3349 Predicted glycosyltran 98.4 1.4E-06 3E-11 72.1 7.9 121 273-413 5-136 (170)
85 cd04951 GT1_WbdM_like This fam 98.4 0.00015 3.2E-09 71.9 24.2 110 341-470 244-358 (360)
86 cd04955 GT1_like_6 This family 98.4 0.00056 1.2E-08 67.9 28.2 108 341-470 247-362 (363)
87 PLN02275 transferase, transfer 98.4 0.00095 2.1E-08 67.0 29.8 75 342-430 286-371 (371)
88 TIGR03088 stp2 sugar transfera 98.3 0.00068 1.5E-08 67.9 27.9 113 342-472 255-372 (374)
89 cd03812 GT1_CapH_like This fam 98.3 0.00034 7.3E-09 69.4 25.3 80 341-433 248-332 (358)
90 PF02350 Epimerase_2: UDP-N-ac 98.3 7.3E-06 1.6E-10 81.0 12.9 131 269-432 178-318 (346)
91 PRK15427 colanic acid biosynth 98.3 0.00069 1.5E-08 68.8 26.9 114 341-472 278-405 (406)
92 TIGR02149 glgA_Coryne glycogen 98.2 0.0013 2.9E-08 66.1 27.5 114 343-472 261-386 (388)
93 TIGR02470 sucr_synth sucrose s 98.2 0.0071 1.5E-07 65.3 33.7 80 341-430 618-707 (784)
94 cd03809 GT1_mtfB_like This fam 98.2 0.00023 5E-09 70.4 21.6 88 340-444 251-345 (365)
95 PLN02846 digalactosyldiacylgly 98.2 0.0014 3.1E-08 66.8 27.1 101 345-472 287-391 (462)
96 PF02684 LpxB: Lipid-A-disacch 98.1 0.00033 7.1E-09 69.4 19.8 100 351-460 253-365 (373)
97 COG0381 WecB UDP-N-acetylgluco 98.1 0.0002 4.2E-09 69.7 17.3 109 342-471 262-373 (383)
98 cd03792 GT1_Trehalose_phosphor 98.1 0.0047 1E-07 61.9 27.8 112 341-472 251-371 (372)
99 PRK01021 lpxB lipid-A-disaccha 98.1 0.0035 7.6E-08 65.2 26.6 182 240-449 382-589 (608)
100 PRK15179 Vi polysaccharide bio 98.1 0.014 3E-07 62.9 31.7 112 341-469 573-690 (694)
101 COG0763 LpxB Lipid A disacchar 98.1 0.0012 2.7E-08 64.1 21.4 198 241-470 158-379 (381)
102 PRK00654 glgA glycogen synthas 98.0 0.00077 1.7E-08 69.8 21.4 103 354-473 352-463 (466)
103 PLN02949 transferase, transfer 98.0 0.015 3.3E-07 59.9 29.9 113 341-473 334-457 (463)
104 PLN00142 sucrose synthase 97.9 0.011 2.3E-07 64.1 27.3 61 363-433 669-737 (815)
105 cd04950 GT1_like_1 Glycosyltra 97.9 0.015 3.1E-07 58.5 26.4 110 341-473 253-372 (373)
106 TIGR02095 glgA glycogen/starch 97.9 0.0056 1.2E-07 63.6 24.1 112 341-472 345-472 (473)
107 PLN02501 digalactosyldiacylgly 97.8 0.031 6.8E-07 59.0 28.6 76 343-433 602-682 (794)
108 cd03806 GT1_ALG11_like This fa 97.8 0.0053 1.1E-07 62.7 23.1 80 341-433 304-393 (419)
109 cd03804 GT1_wbaZ_like This fam 97.8 0.00079 1.7E-08 66.8 16.8 127 274-433 197-327 (351)
110 cd03791 GT1_Glycogen_synthase_ 97.8 0.0077 1.7E-07 62.6 24.3 116 341-470 350-474 (476)
111 PRK10125 putative glycosyl tra 97.8 0.012 2.7E-07 59.6 24.9 140 287-472 256-404 (405)
112 COG5017 Uncharacterized conser 97.6 0.00061 1.3E-08 55.7 9.0 79 348-431 54-141 (161)
113 TIGR02918 accessory Sec system 97.6 0.014 3.1E-07 60.8 21.5 116 341-470 375-497 (500)
114 PLN02316 synthase/transferase 97.5 0.11 2.5E-06 57.8 28.2 115 342-472 900-1033(1036)
115 cd04946 GT1_AmsK_like This fam 97.5 0.0022 4.7E-08 65.2 14.3 112 341-467 288-406 (407)
116 PRK15484 lipopolysaccharide 1, 97.4 0.012 2.7E-07 59.1 18.0 114 341-472 256-377 (380)
117 cd03813 GT1_like_3 This family 97.3 0.033 7.3E-07 57.8 21.3 81 341-433 353-443 (475)
118 cd01635 Glycosyltransferase_GT 97.3 0.024 5.1E-07 51.6 18.0 49 341-391 160-216 (229)
119 PF13844 Glyco_transf_41: Glyc 97.2 0.0053 1.1E-07 62.3 13.4 137 270-433 283-431 (468)
120 cd04949 GT1_gtfA_like This fam 97.2 0.058 1.3E-06 53.8 21.0 98 341-447 260-361 (372)
121 PRK15490 Vi polysaccharide bio 97.1 0.21 4.5E-06 52.1 23.4 114 341-472 454-575 (578)
122 PF13692 Glyco_trans_1_4: Glyc 97.0 0.0032 7E-08 52.9 7.8 80 341-432 52-135 (135)
123 PF00534 Glycos_transf_1: Glyc 97.0 0.0051 1.1E-07 54.1 9.3 81 341-433 72-159 (172)
124 PRK09814 beta-1,6-galactofuran 96.8 0.0076 1.7E-07 59.5 9.9 111 342-469 207-332 (333)
125 PF06722 DUF1205: Protein of u 96.6 0.0026 5.6E-08 50.1 3.9 58 255-312 24-86 (97)
126 PRK14099 glycogen synthase; Pr 96.5 0.86 1.9E-05 47.4 23.2 40 8-48 1-46 (485)
127 COG1817 Uncharacterized protei 96.0 1.5 3.3E-05 41.7 19.5 107 18-143 7-114 (346)
128 PF13579 Glyco_trans_4_4: Glyc 95.7 0.021 4.5E-07 48.9 5.6 95 26-141 6-104 (160)
129 COG3914 Spy Predicted O-linked 95.7 0.31 6.7E-06 50.0 14.2 133 270-427 428-573 (620)
130 PHA01633 putative glycosyl tra 95.5 0.19 4.1E-06 49.3 12.0 86 341-433 200-308 (335)
131 PF13477 Glyco_trans_4_2: Glyc 95.4 0.16 3.5E-06 42.7 10.0 103 12-141 1-107 (139)
132 PRK10017 colanic acid biosynth 94.9 0.67 1.4E-05 47.2 14.0 86 353-450 322-408 (426)
133 PF08660 Alg14: Oligosaccharid 94.7 0.38 8.2E-06 42.3 10.4 115 16-139 3-127 (170)
134 PF12000 Glyco_trans_4_3: Gkyc 94.3 0.55 1.2E-05 41.1 10.3 92 39-141 3-96 (171)
135 KOG4626 O-linked N-acetylgluco 94.2 1.8 4E-05 45.0 15.0 123 270-412 757-890 (966)
136 PHA01630 putative group 1 glyc 94.2 2.4 5.1E-05 41.7 15.9 109 348-472 196-330 (331)
137 PRK14098 glycogen synthase; Pr 94.0 1.1 2.3E-05 46.8 13.8 116 341-473 361-486 (489)
138 TIGR02193 heptsyl_trn_I lipopo 93.9 3.7 7.9E-05 40.0 16.6 39 12-50 1-40 (319)
139 PF13524 Glyco_trans_1_2: Glyc 93.6 0.74 1.6E-05 35.6 9.0 82 367-467 9-91 (92)
140 TIGR02400 trehalose_OtsA alpha 92.5 1.2 2.6E-05 45.9 11.1 105 346-471 340-455 (456)
141 TIGR02201 heptsyl_trn_III lipo 92.5 11 0.00024 37.2 17.7 106 12-138 1-108 (344)
142 PF01975 SurE: Survival protei 92.0 0.44 9.6E-06 42.9 6.4 40 11-52 1-40 (196)
143 cd03789 GT1_LPS_heptosyltransf 91.7 13 0.00027 35.5 18.0 38 12-49 1-39 (279)
144 PF13439 Glyco_transf_4: Glyco 89.7 4.1 8.9E-05 35.0 10.5 30 20-50 11-40 (177)
145 cd03788 GT1_TPS Trehalose-6-Ph 87.3 1.1 2.5E-05 46.2 5.9 104 346-470 345-459 (460)
146 COG0496 SurE Predicted acid ph 86.9 4.4 9.6E-05 37.7 8.8 110 11-142 1-126 (252)
147 COG4370 Uncharacterized protei 86.7 2.9 6.2E-05 39.7 7.5 104 348-467 301-408 (412)
148 TIGR03713 acc_sec_asp1 accesso 85.6 2 4.4E-05 44.9 6.7 92 342-450 409-507 (519)
149 PRK02261 methylaspartate mutas 84.9 2 4.2E-05 36.3 5.1 42 8-50 1-42 (137)
150 PLN02939 transferase, transfer 84.1 16 0.00035 40.9 12.8 115 341-472 836-966 (977)
151 PF06258 Mito_fiss_Elm1: Mitoc 83.9 12 0.00026 36.4 10.7 59 351-412 221-283 (311)
152 PRK02797 4-alpha-L-fucosyltran 82.8 32 0.00069 33.2 12.7 80 342-429 206-291 (322)
153 PF07429 Glyco_transf_56: 4-al 81.7 34 0.00074 33.5 12.6 82 342-431 245-332 (360)
154 PRK13932 stationary phase surv 81.6 18 0.00039 34.0 10.5 40 10-52 5-44 (257)
155 COG0438 RfaG Glycosyltransfera 79.4 57 0.0012 30.8 16.6 81 341-433 256-343 (381)
156 COG1703 ArgK Putative periplas 78.5 6.6 0.00014 37.5 6.5 41 11-52 52-92 (323)
157 TIGR02398 gluc_glyc_Psyn gluco 77.6 32 0.00069 35.8 11.9 110 344-473 364-483 (487)
158 PF04464 Glyphos_transf: CDP-G 77.6 5.1 0.00011 39.9 6.1 114 342-467 252-368 (369)
159 PRK13933 stationary phase surv 77.3 31 0.00067 32.4 10.7 39 11-52 1-39 (253)
160 PRK01077 cobyrinic acid a,c-di 76.7 23 0.00049 36.5 10.6 38 10-48 3-41 (451)
161 cd03793 GT1_Glycogen_synthase_ 76.0 11 0.00023 39.8 7.9 80 351-433 467-553 (590)
162 PF02951 GSH-S_N: Prokaryotic 74.0 5.1 0.00011 32.8 4.0 37 11-48 1-40 (119)
163 COG0003 ArsA Predicted ATPase 74.0 35 0.00076 33.3 10.5 41 11-52 2-43 (322)
164 PF00551 Formyl_trans_N: Formy 73.8 31 0.00067 30.5 9.5 34 11-48 1-36 (181)
165 PRK13934 stationary phase surv 73.7 49 0.0011 31.3 11.0 39 11-52 1-39 (266)
166 PF06925 MGDG_synth: Monogalac 73.7 2.7 5.8E-05 36.8 2.6 40 102-141 79-124 (169)
167 COG2894 MinD Septum formation 73.0 13 0.00027 34.0 6.5 36 13-49 4-41 (272)
168 PRK13931 stationary phase surv 72.9 32 0.0007 32.4 9.7 27 26-52 15-43 (261)
169 PRK05595 replicative DNA helic 72.9 4 8.7E-05 42.0 4.0 38 12-49 203-240 (444)
170 PF01012 ETF: Electron transfe 72.2 14 0.00029 32.1 6.7 109 14-140 3-121 (164)
171 KOG2941 Beta-1,4-mannosyltrans 72.1 1E+02 0.0023 30.2 22.7 124 10-146 12-142 (444)
172 PLN03063 alpha,alpha-trehalose 72.1 12 0.00026 41.6 7.6 99 354-473 371-478 (797)
173 TIGR00715 precor6x_red precorr 71.9 5.9 0.00013 37.3 4.5 33 11-49 1-33 (256)
174 PRK10916 ADP-heptose:LPS hepto 71.8 45 0.00097 32.9 11.1 104 11-138 1-106 (348)
175 PRK10422 lipopolysaccharide co 71.4 34 0.00073 33.9 10.1 107 10-138 5-113 (352)
176 PRK13935 stationary phase surv 70.9 48 0.001 31.1 10.2 39 11-52 1-39 (253)
177 KOG0853 Glycosyltransferase [C 69.4 8.1 0.00018 39.7 5.1 66 367-444 377-442 (495)
178 PRK05986 cob(I)alamin adenolsy 69.3 9.8 0.00021 34.0 5.1 105 9-123 21-126 (191)
179 cd02067 B12-binding B12 bindin 69.0 7.8 0.00017 31.5 4.2 36 12-48 1-36 (119)
180 PRK08760 replicative DNA helic 69.0 4.7 0.0001 41.8 3.5 40 12-51 231-270 (476)
181 PRK00346 surE 5'(3')-nucleotid 68.7 61 0.0013 30.4 10.4 39 11-52 1-39 (250)
182 PRK06321 replicative DNA helic 68.4 29 0.00062 36.0 9.0 38 13-50 229-266 (472)
183 PF05159 Capsule_synth: Capsul 67.6 36 0.00077 32.2 9.0 43 343-388 184-226 (269)
184 PRK06849 hypothetical protein; 67.3 29 0.00062 34.9 8.8 36 9-49 3-38 (389)
185 PRK04885 ppnK inorganic polyph 66.9 8.7 0.00019 36.4 4.5 53 358-432 35-93 (265)
186 COG1618 Predicted nucleotide k 66.2 18 0.0004 31.3 5.8 37 10-47 5-41 (179)
187 PF02374 ArsA_ATPase: Anion-tr 66.0 29 0.00062 33.7 8.1 40 12-52 2-42 (305)
188 cd00984 DnaB_C DnaB helicase C 65.2 43 0.00094 30.9 9.0 41 12-52 15-55 (242)
189 PRK14501 putative bifunctional 64.7 24 0.00053 38.8 8.2 112 345-473 345-463 (726)
190 PRK06718 precorrin-2 dehydroge 64.7 92 0.002 28.1 10.6 145 271-451 11-164 (202)
191 PF02441 Flavoprotein: Flavopr 64.3 9.2 0.0002 31.7 3.8 36 11-48 1-36 (129)
192 PRK14077 pnk inorganic polypho 64.1 11 0.00023 36.3 4.6 55 356-432 62-120 (287)
193 PRK05748 replicative DNA helic 63.5 15 0.00032 37.9 5.9 39 12-50 205-243 (448)
194 PRK05647 purN phosphoribosylgl 63.2 57 0.0012 29.4 8.9 35 11-48 2-37 (200)
195 PRK02155 ppnK NAD(+)/NADH kina 63.0 12 0.00026 36.0 4.8 54 357-432 62-119 (291)
196 PHA02542 41 41 helicase; Provi 62.7 6.6 0.00014 40.6 3.1 37 13-50 193-229 (473)
197 PRK00090 bioD dithiobiotin syn 62.1 62 0.0013 29.4 9.3 33 13-46 2-35 (222)
198 PRK05636 replicative DNA helic 61.1 25 0.00054 36.8 7.0 38 13-50 268-305 (505)
199 cd01974 Nitrogenase_MoFe_beta 60.9 56 0.0012 33.5 9.5 28 109-139 374-401 (435)
200 cd00550 ArsA_ATPase Oxyanion-t 60.2 90 0.002 29.3 10.2 37 13-50 3-39 (254)
201 PRK05973 replicative DNA helic 60.0 34 0.00075 31.8 7.0 38 12-50 66-103 (237)
202 PF07355 GRDB: Glycine/sarcosi 59.0 18 0.00039 35.4 5.1 46 94-139 62-117 (349)
203 COG0052 RpsB Ribosomal protein 58.6 39 0.00083 31.4 6.9 32 112-143 156-189 (252)
204 PRK01911 ppnK inorganic polyph 58.3 16 0.00035 35.2 4.7 56 355-432 61-120 (292)
205 PF02142 MGS: MGS-like domain 57.7 19 0.00042 28.0 4.3 82 27-137 2-94 (95)
206 KOG3339 Predicted glycosyltran 57.6 1.2E+02 0.0026 26.9 9.3 24 14-37 41-64 (211)
207 PF04127 DFP: DNA / pantothena 57.6 15 0.00034 32.6 4.2 39 10-49 3-53 (185)
208 TIGR00087 surE 5'/3'-nucleotid 57.4 71 0.0015 29.9 8.7 38 11-52 1-39 (244)
209 cd07039 TPP_PYR_POX Pyrimidine 57.2 1.1E+02 0.0025 26.4 9.6 27 361-387 64-96 (164)
210 TIGR00665 DnaB replicative DNA 57.1 18 0.00039 37.1 5.2 41 12-52 197-237 (434)
211 PRK10964 ADP-heptose:LPS hepto 57.1 66 0.0014 31.3 9.0 39 11-49 1-40 (322)
212 PRK02649 ppnK inorganic polyph 56.8 17 0.00036 35.3 4.5 54 357-432 67-124 (305)
213 PRK07773 replicative DNA helic 55.8 12 0.00026 42.2 3.9 126 13-142 220-376 (886)
214 TIGR03600 phage_DnaB phage rep 55.7 1.4E+02 0.0031 30.3 11.5 39 12-50 196-234 (421)
215 PF00448 SRP54: SRP54-type pro 55.6 82 0.0018 28.3 8.6 40 12-52 3-42 (196)
216 PF02702 KdpD: Osmosensitive K 55.6 17 0.00037 32.7 4.0 40 10-50 5-44 (211)
217 COG2109 BtuR ATP:corrinoid ade 55.5 1.5E+02 0.0033 26.4 10.6 98 12-123 30-133 (198)
218 PRK06904 replicative DNA helic 55.3 75 0.0016 33.0 9.3 38 13-50 224-261 (472)
219 TIGR00347 bioD dethiobiotin sy 55.2 1.2E+02 0.0025 26.1 9.4 27 18-45 6-32 (166)
220 COG0552 FtsY Signal recognitio 55.2 62 0.0013 31.6 8.0 49 12-61 141-191 (340)
221 cd00561 CobA_CobO_BtuR ATP:cor 54.9 1.4E+02 0.0031 25.8 11.1 99 12-123 4-106 (159)
222 cd01425 RPS2 Ribosomal protein 54.9 41 0.0009 30.1 6.5 33 111-143 126-160 (193)
223 cd03466 Nitrogenase_NifN_2 Nit 54.8 1.1E+02 0.0023 31.4 10.3 32 105-139 365-396 (429)
224 smart00851 MGS MGS-like domain 54.8 78 0.0017 24.1 7.3 34 104-137 47-89 (90)
225 PRK05406 LamB/YcsF family prot 54.8 39 0.00085 31.4 6.4 109 16-138 35-163 (246)
226 COG2120 Uncharacterized protei 54.2 18 0.00038 33.7 4.1 40 7-47 7-46 (237)
227 COG2910 Putative NADH-flavin r 54.1 15 0.00032 32.6 3.2 33 11-48 1-33 (211)
228 PRK08506 replicative DNA helic 53.8 22 0.00047 36.9 5.2 38 12-50 194-231 (472)
229 TIGR00639 PurN phosphoribosylg 53.8 1.6E+02 0.0036 26.2 10.5 34 11-48 1-36 (190)
230 PRK12569 hypothetical protein; 53.8 36 0.00078 31.6 5.9 109 16-138 38-166 (245)
231 PF02310 B12-binding: B12 bind 53.7 27 0.00059 28.1 4.9 35 12-47 2-36 (121)
232 TIGR02919 accessory Sec system 53.3 31 0.00067 35.4 6.1 80 342-433 328-412 (438)
233 PRK12342 hypothetical protein; 53.2 21 0.00046 33.5 4.5 102 22-142 31-145 (254)
234 PRK03378 ppnK inorganic polyph 53.2 20 0.00043 34.5 4.4 56 355-432 60-119 (292)
235 cd07035 TPP_PYR_POX_like Pyrim 53.0 96 0.0021 26.2 8.4 27 362-388 61-93 (155)
236 TIGR02195 heptsyl_trn_II lipop 52.8 1E+02 0.0023 30.0 9.7 102 12-137 1-104 (334)
237 PRK00784 cobyric acid synthase 52.7 1.6E+02 0.0035 30.7 11.4 35 12-47 4-39 (488)
238 PRK07004 replicative DNA helic 52.6 68 0.0015 33.1 8.5 39 13-51 216-254 (460)
239 PRK08305 spoVFB dipicolinate s 52.3 18 0.00039 32.5 3.7 39 10-49 5-43 (196)
240 PRK04539 ppnK inorganic polyph 52.3 19 0.00041 34.7 4.2 54 357-432 67-124 (296)
241 COG0541 Ffh Signal recognition 52.1 1E+02 0.0022 31.4 9.1 59 11-72 101-161 (451)
242 PF00731 AIRC: AIR carboxylase 51.9 97 0.0021 26.5 7.9 139 273-451 2-148 (150)
243 PRK06749 replicative DNA helic 51.6 65 0.0014 32.9 8.1 37 13-50 189-225 (428)
244 PLN02929 NADH kinase 51.3 16 0.00034 35.2 3.4 66 357-432 63-137 (301)
245 PRK03372 ppnK inorganic polyph 51.2 21 0.00046 34.6 4.3 55 356-432 70-128 (306)
246 PRK03359 putative electron tra 50.6 28 0.0006 32.8 4.9 104 22-142 32-148 (256)
247 PRK12311 rpsB 30S ribosomal pr 50.2 82 0.0018 30.8 8.1 33 111-143 151-185 (326)
248 PF03746 LamB_YcsF: LamB/YcsF 50.0 24 0.00052 32.8 4.2 111 14-138 31-161 (242)
249 PF04413 Glycos_transf_N: 3-De 49.9 73 0.0016 28.3 7.3 100 13-141 24-126 (186)
250 PRK13789 phosphoribosylamine-- 49.8 43 0.00092 34.2 6.5 33 10-48 4-36 (426)
251 PRK15408 autoinducer 2-binding 49.7 1E+02 0.0022 30.3 9.0 31 111-141 79-113 (336)
252 PRK01185 ppnK inorganic polyph 49.3 25 0.00055 33.4 4.4 53 358-432 52-105 (271)
253 PRK10867 signal recognition pa 49.0 1.3E+02 0.0028 30.9 9.6 42 11-52 101-142 (433)
254 PRK07236 hypothetical protein; 49.0 15 0.00031 36.9 3.0 36 5-46 1-36 (386)
255 PRK02231 ppnK inorganic polyph 48.9 20 0.00044 34.1 3.7 57 353-431 37-97 (272)
256 PF08433 KTI12: Chromatin asso 48.7 2.1E+02 0.0046 27.2 10.6 106 13-151 4-115 (270)
257 cd01981 Pchlide_reductase_B Pc 48.5 1.1E+02 0.0024 31.2 9.4 33 106-141 364-396 (430)
258 PF02606 LpxK: Tetraacyldisacc 48.3 68 0.0015 31.4 7.4 36 13-49 40-75 (326)
259 COG2185 Sbm Methylmalonyl-CoA 48.2 29 0.00063 29.3 4.1 40 8-48 10-49 (143)
260 TIGR01283 nifE nitrogenase mol 47.9 1.3E+02 0.0029 31.0 9.9 29 108-139 391-419 (456)
261 COG1663 LpxK Tetraacyldisaccha 47.8 46 0.00099 32.5 5.9 35 13-48 52-86 (336)
262 TIGR01917 gly_red_sel_B glycin 47.7 32 0.0007 34.6 4.9 48 93-140 57-114 (431)
263 PF01210 NAD_Gly3P_dh_N: NAD-d 47.6 13 0.00029 31.9 2.1 32 12-49 1-32 (157)
264 TIGR01918 various_sel_PB selen 47.3 33 0.00071 34.5 4.9 47 94-140 58-114 (431)
265 TIGR00379 cobB cobyrinic acid 47.1 3E+02 0.0065 28.3 12.2 105 13-143 2-120 (449)
266 PLN02935 Bifunctional NADH kin 46.9 27 0.00059 36.0 4.4 53 357-432 261-318 (508)
267 PRK09165 replicative DNA helic 46.7 30 0.00065 36.1 4.9 39 13-51 220-272 (497)
268 PRK12726 flagellar biosynthesi 46.1 1.9E+02 0.0041 29.2 9.9 41 11-52 207-247 (407)
269 cd01968 Nitrogenase_NifE_I Nit 46.0 1.5E+02 0.0032 30.1 9.7 27 109-138 353-379 (410)
270 COG1435 Tdk Thymidine kinase [ 45.8 77 0.0017 28.4 6.5 36 13-49 7-42 (201)
271 PRK11889 flhF flagellar biosyn 45.8 1.9E+02 0.0041 29.4 9.9 40 11-51 242-281 (436)
272 COG0859 RfaF ADP-heptose:LPS h 45.7 1.4E+02 0.003 29.3 9.2 101 11-144 176-281 (334)
273 PRK13196 pyrrolidone-carboxyla 45.6 38 0.00082 30.9 4.8 25 11-35 2-28 (211)
274 PRK14075 pnk inorganic polypho 45.6 32 0.0007 32.4 4.5 53 358-432 41-94 (256)
275 cd01122 GP4d_helicase GP4d_hel 45.0 1.1E+02 0.0023 28.9 8.1 39 12-50 32-70 (271)
276 PRK14478 nitrogenase molybdenu 44.9 1.3E+02 0.0028 31.3 9.2 27 109-138 390-416 (475)
277 TIGR00959 ffh signal recogniti 44.9 80 0.0017 32.3 7.5 41 12-52 101-141 (428)
278 PRK06249 2-dehydropantoate 2-r 44.8 23 0.00051 34.4 3.6 35 8-48 3-37 (313)
279 PRK01231 ppnK inorganic polyph 44.4 37 0.0008 32.8 4.8 54 357-432 61-118 (295)
280 cd02070 corrinoid_protein_B12- 44.2 44 0.00096 30.1 5.1 38 10-48 82-119 (201)
281 PRK03501 ppnK inorganic polyph 44.0 34 0.00073 32.4 4.3 54 358-432 39-97 (264)
282 COG1797 CobB Cobyrinic acid a, 43.3 2.5E+02 0.0055 28.6 10.3 39 13-52 3-43 (451)
283 PRK08840 replicative DNA helic 43.0 42 0.00091 34.7 5.2 38 13-50 220-257 (464)
284 TIGR02015 BchY chlorophyllide 42.9 1.9E+02 0.0041 29.5 9.9 29 109-140 352-380 (422)
285 cd01124 KaiC KaiC is a circadi 42.8 1.5E+02 0.0032 25.8 8.3 37 13-50 2-38 (187)
286 PRK13982 bifunctional SbtC-lik 42.8 58 0.0012 33.7 6.1 41 8-49 254-306 (475)
287 PRK10916 ADP-heptose:LPS hepto 42.6 1.8E+02 0.004 28.5 9.7 103 11-141 181-288 (348)
288 TIGR01196 edd 6-phosphoglucona 42.6 2.1E+02 0.0045 30.4 10.0 112 4-144 58-180 (601)
289 PF12146 Hydrolase_4: Putative 42.6 51 0.0011 24.6 4.4 35 11-46 16-50 (79)
290 PRK06067 flagellar accessory p 42.5 32 0.0007 31.7 4.0 38 11-49 26-63 (234)
291 TIGR03878 thermo_KaiC_2 KaiC d 42.0 94 0.002 29.3 7.1 37 12-49 38-74 (259)
292 TIGR02655 circ_KaiC circadian 41.8 1.4E+02 0.0031 31.0 9.0 38 12-50 265-302 (484)
293 PRK14098 glycogen synthase; Pr 41.6 38 0.00083 35.3 4.8 38 10-48 5-48 (489)
294 cd01965 Nitrogenase_MoFe_beta_ 41.4 1.7E+02 0.0038 29.8 9.5 31 106-139 365-395 (428)
295 cd07038 TPP_PYR_PDC_IPDC_like 41.1 1.5E+02 0.0033 25.5 7.8 28 361-388 60-93 (162)
296 COG4394 Uncharacterized protei 40.9 2.5E+02 0.0054 26.9 9.2 174 280-475 182-370 (370)
297 TIGR02201 heptsyl_trn_III lipo 40.3 3.1E+02 0.0067 26.8 10.9 103 11-142 182-288 (344)
298 TIGR00110 ilvD dihydroxy-acid 40.2 1.9E+02 0.0041 30.4 9.3 47 98-144 75-125 (535)
299 COG0801 FolK 7,8-dihydro-6-hyd 40.1 62 0.0013 28.0 4.9 34 273-306 3-36 (160)
300 PRK13011 formyltetrahydrofolat 40.1 2.5E+02 0.0054 26.9 9.7 38 9-48 88-125 (286)
301 cd01121 Sms Sms (bacterial rad 40.0 1E+02 0.0022 30.9 7.2 37 12-49 84-120 (372)
302 PRK03708 ppnK inorganic polyph 40.0 38 0.00082 32.3 4.1 53 358-432 57-112 (277)
303 PRK07206 hypothetical protein; 39.5 62 0.0013 32.8 5.9 32 12-49 4-35 (416)
304 TIGR02195 heptsyl_trn_II lipop 39.1 2.5E+02 0.0055 27.2 10.0 101 10-142 174-279 (334)
305 cd02071 MM_CoA_mut_B12_BD meth 39.0 54 0.0012 26.8 4.4 37 12-49 1-37 (122)
306 PRK05632 phosphate acetyltrans 38.9 2.5E+02 0.0055 30.7 10.7 35 12-47 4-39 (684)
307 TIGR02370 pyl_corrinoid methyl 38.7 58 0.0013 29.2 4.9 39 10-49 84-122 (197)
308 cd07037 TPP_PYR_MenD Pyrimidin 38.6 98 0.0021 26.8 6.1 27 361-387 61-93 (162)
309 PRK04940 hypothetical protein; 38.5 66 0.0014 28.5 5.0 32 112-143 60-92 (180)
310 PF13499 EF-hand_7: EF-hand do 38.4 24 0.00052 24.9 1.9 57 409-469 9-65 (66)
311 cd00532 MGS-like MGS-like doma 38.4 1.6E+02 0.0035 23.5 7.0 83 23-138 10-104 (112)
312 PRK09620 hypothetical protein; 38.4 47 0.001 30.7 4.3 38 10-48 3-52 (229)
313 TIGR01470 cysG_Nterm siroheme 38.3 3E+02 0.0065 24.8 11.1 95 353-452 64-165 (205)
314 PRK06732 phosphopantothenate-- 38.1 38 0.00081 31.3 3.6 36 11-47 1-48 (229)
315 TIGR01162 purE phosphoribosyla 38.1 2.3E+02 0.005 24.4 8.1 32 417-452 116-147 (156)
316 COG2874 FlaH Predicted ATPases 38.1 71 0.0015 29.2 5.1 36 13-49 31-66 (235)
317 PRK11823 DNA repair protein Ra 38.0 1.4E+02 0.003 30.8 8.1 37 12-49 82-118 (446)
318 PRK09054 phosphogluconate dehy 37.8 2.6E+02 0.0055 29.9 9.8 112 4-144 59-181 (603)
319 TIGR00682 lpxK tetraacyldisacc 37.8 1.2E+02 0.0025 29.6 7.1 34 14-48 34-67 (311)
320 PRK14076 pnk inorganic polypho 37.7 41 0.00089 35.8 4.3 53 358-432 348-404 (569)
321 PF06564 YhjQ: YhjQ protein; 37.6 3.5E+02 0.0075 25.3 12.5 33 13-46 4-37 (243)
322 PF01075 Glyco_transf_9: Glyco 37.2 53 0.0011 30.4 4.6 99 270-386 104-208 (247)
323 PRK11914 diacylglycerol kinase 37.0 68 0.0015 31.0 5.5 26 363-388 67-96 (306)
324 PF06626 DUF1152: Protein of u 36.6 83 0.0018 30.3 5.7 34 14-48 1-34 (297)
325 PF00282 Pyridoxal_deC: Pyrido 36.5 65 0.0014 32.2 5.3 68 363-432 106-191 (373)
326 PF05225 HTH_psq: helix-turn-h 36.1 59 0.0013 21.3 3.3 26 418-445 1-26 (45)
327 COG2102 Predicted ATPases of P 35.9 37 0.0008 31.0 3.1 31 108-138 82-117 (223)
328 PRK12448 dihydroxy-acid dehydr 35.5 1.8E+02 0.0039 31.0 8.3 47 98-144 97-147 (615)
329 PLN02470 acetolactate synthase 35.2 90 0.002 33.4 6.5 91 277-387 2-109 (585)
330 TIGR00416 sms DNA repair prote 35.2 1.3E+02 0.0029 31.0 7.4 37 12-49 96-132 (454)
331 PF08542 Rep_fac_C: Replicatio 35.1 1.5E+02 0.0032 22.4 6.0 50 416-473 2-51 (89)
332 TIGR02852 spore_dpaB dipicolin 35.0 44 0.00096 29.8 3.4 37 12-49 2-38 (187)
333 TIGR00708 cobA cob(I)alamin ad 35.0 3.2E+02 0.0068 24.0 10.6 33 12-45 7-39 (173)
334 TIGR02699 archaeo_AfpA archaeo 35.0 47 0.001 29.3 3.5 36 13-49 2-38 (174)
335 PRK12825 fabG 3-ketoacyl-(acyl 35.0 89 0.0019 28.4 5.8 38 6-48 2-39 (249)
336 PF00862 Sucrose_synth: Sucros 34.9 78 0.0017 32.8 5.4 121 21-142 296-433 (550)
337 COG1484 DnaC DNA replication p 34.8 67 0.0014 30.2 4.8 38 10-48 105-142 (254)
338 PRK10490 sensor protein KdpD; 34.8 1.1E+02 0.0024 34.7 7.3 40 10-50 24-63 (895)
339 COG3660 Predicted nucleoside-d 34.5 3E+02 0.0066 26.1 8.7 38 348-386 234-271 (329)
340 PRK00994 F420-dependent methyl 34.5 64 0.0014 29.7 4.3 36 108-143 56-97 (277)
341 COG2861 Uncharacterized protei 34.4 34 0.00074 31.5 2.6 39 97-138 137-178 (250)
342 PRK06719 precorrin-2 dehydroge 34.0 52 0.0011 28.3 3.7 36 7-48 10-45 (157)
343 cd01141 TroA_d Periplasmic bin 33.2 58 0.0013 28.6 4.0 31 110-140 67-99 (186)
344 COG0859 RfaF ADP-heptose:LPS h 33.0 2.1E+02 0.0046 28.0 8.3 106 10-138 1-107 (334)
345 COG1090 Predicted nucleoside-d 32.9 3.7E+02 0.0079 25.7 9.1 20 29-49 13-32 (297)
346 cd01980 Chlide_reductase_Y Chl 32.7 3.4E+02 0.0073 27.6 9.9 29 109-140 347-375 (416)
347 COG3563 KpsC Capsule polysacch 32.6 2.3E+02 0.005 29.2 8.1 149 285-475 165-317 (671)
348 PRK07313 phosphopantothenoylcy 32.4 54 0.0012 29.1 3.5 37 11-49 2-38 (182)
349 PRK10416 signal recognition pa 32.0 3.4E+02 0.0073 26.5 9.3 40 11-51 115-154 (318)
350 COG1066 Sms Predicted ATP-depe 32.0 64 0.0014 32.5 4.2 35 13-49 96-130 (456)
351 KOG3125 Thymidine kinase [Nucl 31.7 2.5E+02 0.0054 25.2 7.3 95 271-410 26-137 (234)
352 PRK01175 phosphoribosylformylg 31.7 4.5E+02 0.0097 24.8 11.3 37 8-48 1-37 (261)
353 COG2159 Predicted metal-depend 31.6 1.9E+02 0.0041 27.9 7.4 28 282-309 139-166 (293)
354 PF03308 ArgK: ArgK protein; 31.4 57 0.0012 30.7 3.6 39 10-49 29-67 (266)
355 COG4088 Predicted nucleotide k 31.2 64 0.0014 29.3 3.7 36 12-48 3-38 (261)
356 COG1348 NifH Nitrogenase subun 31.0 1.3E+02 0.0029 27.9 5.7 41 11-52 2-42 (278)
357 PRK14477 bifunctional nitrogen 30.8 3.1E+02 0.0066 31.3 9.9 31 108-141 385-415 (917)
358 PRK06276 acetolactate synthase 30.7 2.1E+02 0.0045 30.6 8.3 27 361-387 64-96 (586)
359 COG2085 Predicted dinucleotide 30.5 75 0.0016 28.8 4.1 33 11-49 2-34 (211)
360 PRK06522 2-dehydropantoate 2-r 30.2 52 0.0011 31.5 3.4 31 11-47 1-31 (304)
361 cd01715 ETF_alpha The electron 30.1 1.1E+02 0.0023 26.6 5.1 39 101-139 72-113 (168)
362 CHL00072 chlL photochlorophyll 30.0 90 0.002 30.0 5.0 38 11-49 1-38 (290)
363 COG2210 Peroxiredoxin family p 30.0 86 0.0019 26.3 4.0 34 13-47 6-39 (137)
364 TIGR02237 recomb_radB DNA repa 29.9 4E+02 0.0086 23.7 9.8 37 12-49 14-50 (209)
365 PRK06027 purU formyltetrahydro 29.9 4.2E+02 0.0092 25.4 9.5 108 9-142 88-196 (286)
366 TIGR00147 lipid kinase, YegS/R 29.9 1.5E+02 0.0032 28.4 6.4 26 363-388 60-91 (293)
367 COG1422 Predicted membrane pro 29.5 1.8E+02 0.0039 26.1 6.2 82 372-470 24-107 (201)
368 cd02032 Bchl_like This family 29.4 85 0.0018 29.5 4.7 37 11-48 1-37 (267)
369 PRK00039 ruvC Holliday junctio 29.4 1.1E+02 0.0023 26.7 4.8 41 102-142 51-106 (164)
370 cd02069 methionine_synthase_B1 29.3 1E+02 0.0022 28.1 4.9 39 10-49 88-126 (213)
371 PRK06029 3-octaprenyl-4-hydrox 29.2 69 0.0015 28.5 3.7 38 11-49 2-39 (185)
372 TIGR01281 DPOR_bchL light-inde 29.1 89 0.0019 29.4 4.7 35 11-46 1-35 (268)
373 PF06792 UPF0261: Uncharacteri 29.0 3.9E+02 0.0085 27.0 9.2 97 270-391 184-281 (403)
374 cd00983 recA RecA is a bacter 28.9 1.4E+02 0.003 29.3 6.0 40 12-52 57-96 (325)
375 PF06506 PrpR_N: Propionate ca 28.8 65 0.0014 28.3 3.5 28 361-389 35-62 (176)
376 PRK11064 wecC UDP-N-acetyl-D-m 28.7 71 0.0015 32.5 4.2 34 8-47 1-34 (415)
377 PRK14569 D-alanyl-alanine synt 28.6 1E+02 0.0023 29.6 5.2 38 8-46 1-42 (296)
378 PLN02939 transferase, transfer 28.5 91 0.002 35.2 5.1 40 9-49 480-525 (977)
379 PF07015 VirC1: VirC1 protein; 28.4 1.7E+02 0.0038 27.0 6.1 43 13-56 4-47 (231)
380 TIGR02012 tigrfam_recA protein 28.2 1.5E+02 0.0033 29.0 6.1 38 12-50 57-94 (321)
381 TIGR03446 mycothiol_Mca mycoth 27.9 2.4E+02 0.0052 27.0 7.3 19 100-118 109-127 (283)
382 PRK07710 acetolactate synthase 27.9 2E+02 0.0044 30.6 7.7 27 361-387 79-111 (571)
383 PRK08322 acetolactate synthase 27.9 2.2E+02 0.0047 30.1 7.9 27 361-387 64-96 (547)
384 PRK09219 xanthine phosphoribos 27.8 1.3E+02 0.0028 26.8 5.2 32 108-139 46-79 (189)
385 cd01452 VWA_26S_proteasome_sub 27.7 3.1E+02 0.0068 24.4 7.6 62 11-73 109-173 (187)
386 cd00501 Peptidase_C15 Pyroglut 27.6 2.1E+02 0.0044 25.6 6.6 26 11-36 1-28 (194)
387 PRK13234 nifH nitrogenase redu 27.5 91 0.002 30.0 4.5 37 11-48 5-41 (295)
388 PF05728 UPF0227: Uncharacteri 27.5 1E+02 0.0022 27.4 4.5 31 115-145 62-93 (187)
389 PRK12475 thiamine/molybdopteri 27.5 3.1E+02 0.0067 27.0 8.3 34 7-46 21-55 (338)
390 PRK09739 hypothetical protein; 27.2 1.4E+02 0.0031 26.6 5.5 38 8-46 1-41 (199)
391 PRK13236 nitrogenase reductase 27.0 95 0.0021 29.9 4.5 38 10-48 6-43 (296)
392 TIGR00173 menD 2-succinyl-5-en 27.0 3.3E+02 0.0072 27.7 8.8 26 361-386 64-95 (432)
393 PLN02727 NAD kinase 26.9 85 0.0019 35.1 4.5 54 357-432 742-799 (986)
394 PRK10422 lipopolysaccharide co 26.9 2.4E+02 0.0052 27.8 7.5 98 271-386 183-287 (352)
395 PRK07313 phosphopantothenoylcy 26.8 4.5E+02 0.0097 23.2 10.3 51 380-431 113-179 (182)
396 PRK13054 lipid kinase; Reviewe 26.8 1.3E+02 0.0027 29.0 5.4 26 363-388 59-92 (300)
397 PF08844 DUF1815: Domain of un 26.7 3E+02 0.0066 21.3 6.6 26 24-50 16-41 (105)
398 PRK06270 homoserine dehydrogen 26.7 3.6E+02 0.0078 26.5 8.7 59 351-410 80-150 (341)
399 COG0287 TyrA Prephenate dehydr 26.7 4.2E+02 0.0092 25.3 8.8 36 10-51 3-38 (279)
400 COG0467 RAD55 RecA-superfamily 26.7 92 0.002 29.2 4.3 41 11-52 24-64 (260)
401 PF01993 MTD: methylene-5,6,7, 26.6 89 0.0019 28.9 3.8 35 109-143 56-96 (276)
402 PF08323 Glyco_transf_5: Starc 26.5 49 0.0011 30.9 2.4 27 22-49 17-43 (245)
403 COG0240 GpsA Glycerol-3-phosph 26.5 83 0.0018 30.7 3.9 32 11-48 2-33 (329)
404 TIGR00725 conserved hypothetic 26.4 57 0.0012 28.2 2.6 37 352-388 84-123 (159)
405 PRK11519 tyrosine kinase; Prov 26.4 5E+02 0.011 28.6 10.5 37 12-49 527-565 (719)
406 PRK13896 cobyrinic acid a,c-di 26.3 7.2E+02 0.016 25.5 11.1 36 12-48 3-39 (433)
407 PRK10964 ADP-heptose:LPS hepto 26.3 1.4E+02 0.003 28.9 5.7 120 283-431 193-321 (322)
408 TIGR03880 KaiC_arch_3 KaiC dom 26.2 1.6E+02 0.0035 26.7 5.8 38 12-50 18-55 (224)
409 PRK13337 putative lipid kinase 26.1 1.8E+02 0.0039 28.0 6.3 26 363-388 60-91 (304)
410 PRK00885 phosphoribosylamine-- 26.1 1.1E+02 0.0024 31.1 5.1 31 11-46 1-31 (420)
411 PRK08293 3-hydroxybutyryl-CoA 26.1 70 0.0015 30.6 3.4 34 9-48 2-35 (287)
412 PTZ00318 NADH dehydrogenase-li 25.7 70 0.0015 32.6 3.6 38 8-51 8-45 (424)
413 PRK00911 dihydroxy-acid dehydr 25.7 4.4E+02 0.0096 27.8 9.2 46 98-143 95-144 (552)
414 PRK12724 flagellar biosynthesi 25.5 3E+02 0.0066 28.1 7.8 41 11-52 224-265 (432)
415 PRK13011 formyltetrahydrofolat 25.5 5.4E+02 0.012 24.7 9.3 76 358-446 194-271 (286)
416 PRK13057 putative lipid kinase 25.4 1.1E+02 0.0025 29.1 4.8 30 357-388 49-82 (287)
417 PF14336 DUF4392: Domain of un 25.2 1.1E+02 0.0024 29.4 4.6 42 10-52 40-89 (291)
418 TIGR03837 efp_adjacent_2 conse 25.0 83 0.0018 31.2 3.6 32 17-48 7-38 (371)
419 cd01967 Nitrogenase_MoFe_alpha 24.9 4.3E+02 0.0093 26.6 9.1 28 110-140 353-380 (406)
420 COG3349 Uncharacterized conser 24.9 69 0.0015 33.1 3.2 33 11-49 1-33 (485)
421 KOG1432 Predicted DNA repair e 24.6 1.1E+02 0.0024 29.9 4.4 44 99-142 87-143 (379)
422 PRK14619 NAD(P)H-dependent gly 24.4 82 0.0018 30.5 3.6 33 10-48 4-36 (308)
423 PRK12921 2-dehydropantoate 2-r 24.3 76 0.0016 30.4 3.4 31 11-47 1-31 (305)
424 TIGR00730 conserved hypothetic 24.2 1.5E+02 0.0032 26.2 4.8 36 352-387 89-133 (178)
425 TIGR01007 eps_fam capsular exo 24.1 1.6E+02 0.0035 26.2 5.3 40 8-48 14-55 (204)
426 PRK13010 purU formyltetrahydro 24.0 5.4E+02 0.012 24.7 9.0 62 363-431 201-264 (289)
427 cd01985 ETF The electron trans 23.9 1.3E+02 0.0029 26.3 4.6 36 103-138 82-120 (181)
428 PLN02172 flavin-containing mon 23.9 68 0.0015 33.2 3.0 41 1-47 1-41 (461)
429 PRK04761 ppnK inorganic polyph 23.8 52 0.0011 30.8 2.0 27 359-387 26-56 (246)
430 PF02776 TPP_enzyme_N: Thiamin 23.8 1.6E+02 0.0034 25.6 5.0 26 363-388 67-98 (172)
431 PRK12827 short chain dehydroge 23.7 1.1E+02 0.0023 28.0 4.1 35 8-47 4-38 (249)
432 TIGR03877 thermo_KaiC_1 KaiC d 23.6 2.8E+02 0.006 25.5 6.9 39 12-51 23-61 (237)
433 cd01976 Nitrogenase_MoFe_alpha 23.4 83 0.0018 32.1 3.6 32 106-140 363-394 (421)
434 cd01714 ETF_beta The electron 23.4 1.2E+02 0.0027 27.2 4.3 39 100-138 96-140 (202)
435 cd00757 ThiF_MoeB_HesA_family 23.3 3.8E+02 0.0081 24.5 7.7 34 6-45 17-51 (228)
436 COG1927 Mtd Coenzyme F420-depe 23.3 1.3E+02 0.0029 27.0 4.2 39 106-144 54-98 (277)
437 PRK08155 acetolactate synthase 23.3 2.4E+02 0.0052 30.0 7.2 80 287-387 14-109 (564)
438 PRK10353 3-methyl-adenine DNA 23.0 3.6E+02 0.0079 24.0 7.0 75 385-466 22-119 (187)
439 cd02034 CooC The accessory pro 22.9 1.7E+02 0.0038 23.6 4.7 37 12-49 1-37 (116)
440 PF02844 GARS_N: Phosphoribosy 22.9 90 0.0019 24.7 2.8 32 106-137 56-90 (100)
441 PRK08229 2-dehydropantoate 2-r 22.8 83 0.0018 30.8 3.3 32 11-48 3-34 (341)
442 COG2039 Pcp Pyrrolidone-carbox 22.7 3.6E+02 0.0079 24.1 6.7 27 11-37 1-29 (207)
443 PRK05299 rpsB 30S ribosomal pr 22.7 1.5E+02 0.0033 27.9 4.9 32 111-142 156-189 (258)
444 CHL00076 chlB photochlorophyll 22.7 99 0.0021 32.5 4.0 34 104-140 366-399 (513)
445 PRK05858 hypothetical protein; 22.7 3.6E+02 0.0078 28.4 8.3 26 362-387 69-100 (542)
446 PRK13059 putative lipid kinase 22.6 2.3E+02 0.005 27.1 6.3 26 363-388 59-90 (295)
447 COG0223 Fmt Methionyl-tRNA for 22.5 2.5E+02 0.0054 27.3 6.3 37 10-52 1-37 (307)
448 PRK08223 hypothetical protein; 22.5 3.4E+02 0.0073 26.1 7.2 35 5-45 22-57 (287)
449 PF01695 IstB_IS21: IstB-like 22.5 1.5E+02 0.0032 26.1 4.5 37 11-48 48-84 (178)
450 COG0162 TyrS Tyrosyl-tRNA synt 22.5 85 0.0018 31.7 3.3 34 13-48 37-73 (401)
451 cd01840 SGNH_hydrolase_yrhL_li 22.4 1.3E+02 0.0029 25.3 4.2 38 271-309 51-88 (150)
452 TIGR00877 purD phosphoribosyla 22.4 3E+02 0.0065 27.8 7.5 33 11-49 1-33 (423)
453 TIGR01917 gly_red_sel_B glycin 22.4 6.3E+02 0.014 25.7 9.1 49 98-146 322-377 (431)
454 PF03693 RHH_2: Uncharacterise 22.3 1.9E+02 0.0041 21.8 4.4 50 418-473 29-78 (80)
455 PRK05920 aromatic acid decarbo 22.3 1E+02 0.0022 27.9 3.5 37 11-49 4-40 (204)
456 PRK13185 chlL protochlorophyll 22.3 1.4E+02 0.003 28.1 4.7 36 12-48 4-39 (270)
457 TIGR01501 MthylAspMutase methy 22.2 1.8E+02 0.004 24.3 4.7 38 11-49 2-39 (134)
458 COG1748 LYS9 Saccharopine dehy 22.1 5.5E+02 0.012 25.9 8.8 32 11-48 2-34 (389)
459 PRK12829 short chain dehydroge 22.0 1.5E+02 0.0033 27.3 4.9 39 4-47 5-43 (264)
460 COG0503 Apt Adenine/guanine ph 22.0 2E+02 0.0044 25.3 5.3 33 106-138 47-81 (179)
461 PRK02910 light-independent pro 22.0 1.1E+02 0.0024 32.2 4.2 34 104-140 354-387 (519)
462 PF10093 DUF2331: Uncharacteri 21.9 99 0.0021 30.8 3.5 32 17-48 7-38 (374)
463 COG2086 FixA Electron transfer 21.8 1.6E+02 0.0034 27.8 4.7 98 27-141 42-146 (260)
464 PRK13055 putative lipid kinase 21.7 2.6E+02 0.0056 27.4 6.5 26 363-388 62-93 (334)
465 PF12169 DNA_pol3_gamma3: DNA 21.6 3.2E+02 0.0069 22.6 6.3 50 416-473 12-61 (143)
466 cd01491 Ube1_repeat1 Ubiquitin 21.6 6.7E+02 0.015 24.0 9.1 37 4-46 13-50 (286)
467 PF03446 NAD_binding_2: NAD bi 21.6 82 0.0018 27.1 2.7 30 11-46 2-31 (163)
468 PF06180 CbiK: Cobalt chelatas 21.4 1.5E+02 0.0031 28.1 4.5 38 272-309 2-42 (262)
469 KOG0832 Mitochondrial/chloropl 21.4 84 0.0018 28.8 2.7 112 20-142 90-205 (251)
470 PRK09354 recA recombinase A; P 21.3 3E+02 0.0066 27.2 6.8 40 12-52 62-101 (349)
471 KOG0100 Molecular chaperones G 21.1 1.5E+02 0.0032 29.8 4.4 50 379-429 499-552 (663)
472 TIGR01918 various_sel_PB selen 21.1 6.4E+02 0.014 25.7 8.9 49 98-146 322-377 (431)
473 COG0143 MetG Methionyl-tRNA sy 21.0 1.4E+02 0.003 31.7 4.6 38 11-49 5-52 (558)
474 CHL00067 rps2 ribosomal protei 20.9 2.2E+02 0.0047 26.3 5.4 33 111-143 160-194 (230)
475 COG2205 KdpD Osmosensitive K+ 20.9 3.6E+02 0.0077 30.0 7.5 42 10-52 22-63 (890)
476 COG0151 PurD Phosphoribosylami 20.8 3.1E+02 0.0066 27.8 6.6 29 11-45 1-29 (428)
477 COG0569 TrkA K+ transport syst 20.7 1.1E+02 0.0024 28.1 3.5 32 11-48 1-32 (225)
478 KOG0345 ATP-dependent RNA heli 20.7 2E+02 0.0043 29.6 5.3 22 347-370 326-347 (567)
479 COG0129 IlvD Dihydroxyacid deh 20.4 4.1E+02 0.0089 28.2 7.7 45 99-143 107-155 (575)
480 PLN02293 adenine phosphoribosy 20.3 2.4E+02 0.0052 25.1 5.4 30 109-138 59-90 (187)
481 PRK08277 D-mannonate oxidoredu 20.3 1.3E+02 0.0028 28.2 4.0 42 1-47 1-42 (278)
482 COG2099 CobK Precorrin-6x redu 20.3 6.7E+02 0.015 23.6 8.3 38 389-427 182-220 (257)
483 PF05690 ThiG: Thiazole biosyn 20.3 1.4E+02 0.0029 27.7 3.8 46 383-429 124-174 (247)
484 TIGR01278 DPOR_BchB light-inde 20.2 1.3E+02 0.0027 31.7 4.2 35 104-141 356-390 (511)
485 PF10727 Rossmann-like: Rossma 20.1 1.8E+02 0.0039 24.0 4.3 37 6-48 6-42 (127)
486 PRK05579 bifunctional phosphop 20.1 1.2E+02 0.0026 30.7 3.8 40 8-49 4-43 (399)
487 TIGR01011 rpsB_bact ribosomal 20.0 2.1E+02 0.0045 26.4 5.1 32 111-142 154-187 (225)
No 1
>PLN02992 coniferyl-alcohol glucosyltransferase
Probab=100.00 E-value=8.9e-64 Score=504.85 Aligned_cols=454 Identities=41% Similarity=0.745 Sum_probs=341.9
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCCchhhhhhhhcCCCceeEEEec-CCCCCCC-cchhhHH
Q 045267 10 APHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPPSEAQKSTLESLPSSINSVFLP-VSLNDVA-EDARAET 87 (482)
Q Consensus 10 ~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~-~~~~~~~ 87 (482)
+.||+++|+|++||++|++.||+.|+.++|+.|||++++.+..... ..... ..++++..+| +..++++ .+.....
T Consensus 5 ~pHVvl~P~paqGHi~P~l~LAk~La~~~g~~vT~v~t~~n~~~~~-~~~~~--~~~i~~~~lp~p~~~glp~~~~~~~~ 81 (481)
T PLN02992 5 KPHAAMFSSPGMGHVIPVIELGKRLSANHGFHVTVFVLETDAASAQ-SKFLN--STGVDIVGLPSPDISGLVDPSAHVVT 81 (481)
T ss_pred CcEEEEeCCcccchHHHHHHHHHHHHhCCCcEEEEEeCCCchhhhh-hcccc--CCCceEEECCCccccCCCCCCccHHH
Confidence 5699999999999999999999999733499999999997643211 11111 1258888888 5555554 3332222
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhCCCccEEEeCCCCccHHHHHHHcCCccEEEccchHHHHHHHhhhhhhhccCCCCCccc
Q 045267 88 VISLTVLRSLPCLRQELTSLVAKATVAALVVDLFGTDAFDVAQEFNISPYIFYPSTAMCLSLFLHLEKLDQMVPRDCEYR 167 (482)
Q Consensus 88 ~~~~~~~~~~~~l~~~l~~~~~~~~pD~vi~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (482)
.+........+.+++.++++ ..+|++||+|.+.+|+..+|+++|||++.|+++++..++.+.+.+....... .+..
T Consensus 82 ~~~~~~~~~~~~~~~~l~~~--~~~p~cvV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~~~~~~--~~~~ 157 (481)
T PLN02992 82 KIGVIMREAVPTLRSKIAEM--HQKPTALIVDLFGTDALCLGGEFNMLTYIFIASNARFLGVSIYYPTLDKDIK--EEHT 157 (481)
T ss_pred HHHHHHHHhHHHHHHHHHhc--CCCCeEEEECCcchhHHHHHHHcCCCEEEEecCcHHHHHHHHhhhhhccccc--cccc
Confidence 23222333334444444432 2378999999999999999999999999999999988776665543222111 1100
Q ss_pred CCCCcccCCCCCccccCCCCcccccccchHHHHHHHHHhhcccccEEEEcCccccchhHHHHhhhcC---CCCCCCeEee
Q 045267 168 DMSEPVQIPGCIPVHGGYLLDPVQDRKNEAYRWVLHHAKRYKLAEGIIVNSFTDLEGGALKALQHQD---EPGKPPVYPV 244 (482)
Q Consensus 168 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~---~p~~p~~~~v 244 (482)
....++.+|++.+++..+++..+.+.....+..+.+.......++++++|||.+||..+.+++.... +...+.++.|
T Consensus 158 ~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~l~~l~~~~~~~~~~~~~v~~V 237 (481)
T PLN02992 158 VQRKPLAMPGCEPVRFEDTLDAYLVPDEPVYRDFVRHGLAYPKADGILVNTWEEMEPKSLKSLQDPKLLGRVARVPVYPI 237 (481)
T ss_pred cCCCCcccCCCCccCHHHhhHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHhhccccccccCCceEEe
Confidence 0112445788877777777765444333345556666666778899999999999999998886420 1012469999
Q ss_pred ccCcCCCCCCccccccccccccCCCCCcEEEEeccCCCCCCHHHHHHHHHHHHhcCCceEEEEeCCCCCCC-CcccccCC
Q 045267 245 GPLVKTGSTAESKNEGCLKWLDDQPLGSVLFVSFGSGGTLSCEQLNELALGLEMSEQRFLWVVRSPNNAAN-STFFSVNS 323 (482)
Q Consensus 245 Gp~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~-~~~~~~~~ 323 (482)
||++..... ...+++|.+||+.++++++|||||||+..++.+++.++..+|+.++++|||++..+..... ..+++...
T Consensus 238 GPl~~~~~~-~~~~~~c~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW~~r~~~~~~~~~~~~~~~~ 316 (481)
T PLN02992 238 GPLCRPIQS-SKTDHPVLDWLNKQPNESVLYISFGSGGSLSAKQLTELAWGLEMSQQRFVWVVRPPVDGSACSAYFSANG 316 (481)
T ss_pred cCccCCcCC-CcchHHHHHHHHcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCEEEEEeCCcccccccccccCcc
Confidence 999764321 1234569999999988999999999999999999999999999999999999974311000 00010000
Q ss_pred ---CCCCCCCCchhHHhhhcCCCeeeccccchhhhhhcccccccccccCchhHHHHhhcCCcEeeccccccchhhHHHHH
Q 045267 324 ---HKDPYDFLPKGFLDRTKGRGMLVPSWAPQAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAWPLYAEQKMNAVILT 400 (482)
Q Consensus 324 ---~~~~~~~lp~~~~~~~~~~~v~~~~~ipq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~ 400 (482)
..+..+.+|++|.++.+++|+++.+|+||.+||+|++|++||||||+||+.||+++|||||++|+++||+.||++++
T Consensus 317 ~~~~~~~~~~lp~~f~eR~~~rg~vv~~W~PQ~~iL~h~~vg~FitH~G~nS~~Eal~~GVP~l~~P~~~DQ~~na~~~~ 396 (481)
T PLN02992 317 GETRDNTPEYLPEGFVSRTHDRGFVVPSWAPQAEILAHQAVGGFLTHCGWSSTLESVVGGVPMIAWPLFAEQNMNAALLS 396 (481)
T ss_pred cccccchhhhCCHHHHHHhcCCCEEEeecCCHHHHhCCcccCeeEecCchhHHHHHHHcCCCEEecCccchhHHHHHHHH
Confidence 00112358999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred -hhcceeeeeccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHh--hcCCchHHHHHHHHHHHhhc
Q 045267 401 -EDVKLALRPKANENGIVGRDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVL--SENGSSTKALSQLASKWNNN 473 (482)
Q Consensus 401 -~~~G~G~~l~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~--~~~g~~~~~~~~~~~~~~~~ 473 (482)
+ +|+|+.++.. ++.++.++|+++|+++|.++.|+++|++++++++++++|+ ++|||+.+++++|++.++.-
T Consensus 397 ~~-~g~gv~~~~~-~~~~~~~~l~~av~~vm~~~~g~~~r~~a~~~~~~a~~Av~~~~GGSS~~~l~~~v~~~~~~ 470 (481)
T PLN02992 397 DE-LGIAVRSDDP-KEVISRSKIEALVRKVMVEEEGEEMRRKVKKLRDTAEMSLSIDGGGVAHESLCRVTKECQRF 470 (481)
T ss_pred HH-hCeeEEecCC-CCcccHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHH
Confidence 7 9999999752 1348999999999999998778899999999999999999 46999999999999988654
No 2
>PLN03015 UDP-glucosyl transferase
Probab=100.00 E-value=5.4e-63 Score=496.26 Aligned_cols=455 Identities=38% Similarity=0.714 Sum_probs=339.4
Q ss_pred ccCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCCchhhhhhhhcC--CCceeEEEec-CCCCCC-Ccch
Q 045267 8 QAAPHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPPSEAQKSTLESL--PSSINSVFLP-VSLNDV-AEDA 83 (482)
Q Consensus 8 ~~~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~-~~~~~~-~~~~ 83 (482)
|.+.||+++|+|++||++|++.||+.|+.++|..|||+++..+............. ..++++..+| ...+++ +.+.
T Consensus 1 ~~~pHvvl~P~p~qGHi~P~l~LAk~La~~~g~~vT~v~t~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~~l~~~~~ 80 (470)
T PLN03015 1 MDQPHALLVASPGLGHLIPILELGNRLSSVLNIHVTILAVTSGSSSPTETEAIHAAAARTTCQITEIPSVDVDNLVEPDA 80 (470)
T ss_pred CCCcEEEEECCcccccHHHHHHHHHHHHhCCCCeEEEEECCCchhhhccccccccccCCCceEEEECCCCccccCCCCCc
Confidence 56779999999999999999999999986559999999877544311001111111 1258999998 443443 3222
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHhhCCCccEEEeCCCCccHHHHHHHcCCc-cEEEccchHHHHHHHhhhhhhhccCCC
Q 045267 84 RAETVISLTVLRSLPCLRQELTSLVAKATVAALVVDLFGTDAFDVAQEFNIS-PYIFYPSTAMCLSLFLHLEKLDQMVPR 162 (482)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pD~vi~D~~~~~~~~~A~~lgIP-~v~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (482)
.....+........+.+.+.++++ ..+|++||+|.+.+|+..+|+++||| ++.|+++.++..+.+++.+.......
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~l--~~~~~ciV~D~f~~w~~~vA~~lgIP~~~~f~~~~a~~~~~~~~l~~~~~~~~- 157 (470)
T PLN03015 81 TIFTKMVVKMRAMKPAVRDAVKSM--KRKPTVMIVDFFGTALMSIADDVGVTAKYVYIPSHAWFLAVMVYLPVLDTVVE- 157 (470)
T ss_pred cHHHHHHHHHHhchHHHHHHHHhc--CCCCeEEEEcCCcHHHHHHHHHcCCCEEEEEcCHHHHHHHHHHhhhhhhcccc-
Confidence 222223333333333344444332 13689999999999999999999999 58888888877766666554322111
Q ss_pred CCcccCCCCcccCCCCCccccCCCCcccccccchHHHHHHHHHhhcccccEEEEcCccccchhHHHHhhhcC---CCCCC
Q 045267 163 DCEYRDMSEPVQIPGCIPVHGGYLLDPVQDRKNEAYRWVLHHAKRYKLAEGIIVNSFTDLEGGALKALQHQD---EPGKP 239 (482)
Q Consensus 163 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~---~p~~p 239 (482)
.+..+...++.+|+++++...+++..+.++....+..+.+.......++++++|||++||..+.+++.... +-..+
T Consensus 158 -~~~~~~~~~~~vPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~a~gvlvNTf~eLE~~~~~~l~~~~~~~~~~~~ 236 (470)
T PLN03015 158 -GEYVDIKEPLKIPGCKPVGPKELMETMLDRSDQQYKECVRSGLEVPMSDGVLVNTWEELQGNTLAALREDMELNRVMKV 236 (470)
T ss_pred -cccCCCCCeeeCCCCCCCChHHCCHhhcCCCcHHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhhcccccccCC
Confidence 11111123455799888888888876544433335555566666788999999999999999998887521 00124
Q ss_pred CeEeeccCcCCCCCCccccccccccccCCCCCcEEEEeccCCCCCCHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCccc
Q 045267 240 PVYPVGPLVKTGSTAESKNEGCLKWLDDQPLGSVLFVSFGSGGTLSCEQLNELALGLEMSEQRFLWVVRSPNNAANSTFF 319 (482)
Q Consensus 240 ~~~~vGp~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~ 319 (482)
.++.|||++..... ...+++|.+||+.++++++|||||||+...+.+++.++..+|+.++++|||++..+.....+
T Consensus 237 ~v~~VGPl~~~~~~-~~~~~~~~~WLd~~~~~sVvyvsFGS~~~~~~~q~~ela~gl~~s~~~FlWv~r~~~~~~~~--- 312 (470)
T PLN03015 237 PVYPIGPIVRTNVH-VEKRNSIFEWLDKQGERSVVYVCLGSGGTLTFEQTVELAWGLELSGQRFVWVLRRPASYLGA--- 312 (470)
T ss_pred ceEEecCCCCCccc-ccchHHHHHHHHhCCCCCEEEEECCcCCcCCHHHHHHHHHHHHhCCCcEEEEEecCcccccc---
Confidence 69999999843211 12235799999999999999999999999999999999999999999999999743210000
Q ss_pred ccCCCCCCCCCCchhHHhhhcCCCeeeccccchhhhhhcccccccccccCchhHHHHhhcCCcEeeccccccchhhHHHH
Q 045267 320 SVNSHKDPYDFLPKGFLDRTKGRGMLVPSWAPQAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAWPLYAEQKMNAVIL 399 (482)
Q Consensus 320 ~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~ipq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv 399 (482)
...+..+..+.+|++|.++.+.+++++.+|+||.+||+|++|++||||||+||+.||+++|||||++|++.||+.||+++
T Consensus 313 ~~~~~~~~~~~lp~~f~er~~~rGl~v~~W~PQ~~vL~h~~vg~fvtH~GwnS~~Eai~~GvP~v~~P~~~DQ~~na~~~ 392 (470)
T PLN03015 313 SSSDDDQVSASLPEGFLDRTRGVGLVVTQWAPQVEILSHRSIGGFLSHCGWSSVLESLTKGVPIVAWPLYAEQWMNATLL 392 (470)
T ss_pred ccccccchhhcCChHHHHhhccCceEEEecCCHHHHhccCccCeEEecCCchhHHHHHHcCCCEEecccccchHHHHHHH
Confidence 00000012235899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhcceeeeecc-CCCCccCHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Q 045267 400 TEDVKLALRPKA-NENGIVGRDEIAKVVKALMEG--EQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKW 470 (482)
Q Consensus 400 ~~~~G~G~~l~~-~~~~~~~~~~l~~ai~~vl~~--~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~ 470 (482)
++++|+|+++.. .+++.++.++|+++|+++|.+ ++|+++|+||++|++++++|+.+|||+++++++|++++
T Consensus 393 ~~~~gvg~~~~~~~~~~~v~~e~i~~~v~~lm~~~~eeg~~~R~ra~~lk~~a~~Av~eGGSS~~nl~~~~~~~ 466 (470)
T PLN03015 393 TEEIGVAVRTSELPSEKVIGREEVASLVRKIVAEEDEEGQKIRAKAEEVRVSSERAWSHGGSSYNSLFEWAKRC 466 (470)
T ss_pred HHHhCeeEEecccccCCccCHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHhc
Confidence 544999999952 223359999999999999963 45789999999999999999999999999999999886
No 3
>PLN02208 glycosyltransferase family protein
Probab=100.00 E-value=5.9e-63 Score=497.30 Aligned_cols=425 Identities=23% Similarity=0.380 Sum_probs=328.3
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCCchhhhhhhhcCCCceeEEEec-CCCCCCCcchhhH--
Q 045267 10 APHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPPSEAQKSTLESLPSSINSVFLP-VSLNDVAEDARAE-- 86 (482)
Q Consensus 10 ~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~-- 86 (482)
++||+++|+++.||++|++.||+.|+++ ||+|||++++.+..... . ....+.++++..++ ...++++.+.+..
T Consensus 4 ~~hvv~~P~paqGHi~P~l~LAk~La~~-G~~VT~vtt~~~~~~i~--~-~~a~~~~i~~~~l~~p~~dgLp~g~~~~~~ 79 (442)
T PLN02208 4 KFHAFMFPWFAFGHMIPFLHLANKLAEK-GHRVTFLLPKKAQKQLE--H-HNLFPDSIVFHPLTIPPVNGLPAGAETTSD 79 (442)
T ss_pred CCEEEEecCccccHHHHHHHHHHHHHhC-CCEEEEEeccchhhhhh--c-ccCCCCceEEEEeCCCCccCCCCCcccccc
Confidence 6799999999999999999999999987 99999999876543211 1 11123357777776 3235666654322
Q ss_pred --HHHHHHHHhhhHHHHHHHHHHhhCCCccEEEeCCCCccHHHHHHHcCCccEEEccchHHHHHHHhhhhhhhccCCCCC
Q 045267 87 --TVISLTVLRSLPCLRQELTSLVAKATVAALVVDLFGTDAFDVAQEFNISPYIFYPSTAMCLSLFLHLEKLDQMVPRDC 164 (482)
Q Consensus 87 --~~~~~~~~~~~~~l~~~l~~~~~~~~pD~vi~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (482)
..+...+....+.+.+.+++++++.++|+||+|. ..|+..+|+++|||++.|+++++...+ +.+.+. ....
T Consensus 80 l~~~l~~~~~~~~~~~~~~l~~~L~~~~~~cVV~D~-~~wa~~vA~e~giP~~~f~~~~a~~~~-~~~~~~--~~~~--- 152 (442)
T PLN02208 80 IPISMDNLLSEALDLTRDQVEAAVRALRPDLIFFDF-AQWIPEMAKEHMIKSVSYIIVSATTIA-HTHVPG--GKLG--- 152 (442)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEECC-cHhHHHHHHHhCCCEEEEEhhhHHHHH-HHccCc--cccC---
Confidence 1233344445667777788877777899999994 788999999999999999999887654 433321 0000
Q ss_pred cccCCCCcccCCCCCc----cccCCCCcccccccchHHHHHHHHH-hhcccccEEEEcCccccchhHHHHhhhcCCCCCC
Q 045267 165 EYRDMSEPVQIPGCIP----VHGGYLLDPVQDRKNEAYRWVLHHA-KRYKLAEGIIVNSFTDLEGGALKALQHQDEPGKP 239 (482)
Q Consensus 165 ~~~~~~~~~~~p~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~p~~p 239 (482)
..+|++++ +...+++.. ......+..+.... .....++++++|||.+||..+.+++.. +..|
T Consensus 153 --------~~~pglp~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~vl~Ntf~eLE~~~~~~~~~---~~~~ 219 (442)
T PLN02208 153 --------VPPPGYPSSKVLFRENDAHAL--ATLSIFYKRLYHQITTGLKSCDVIALRTCKEIEGKFCDYISR---QYHK 219 (442)
T ss_pred --------CCCCCCCCcccccCHHHcCcc--cccchHHHHHHHHHHhhhccCCEEEEECHHHHHHHHHHHHHh---hcCC
Confidence 11355533 233444421 11222234444333 345678899999999999999888864 3447
Q ss_pred CeEeeccCcCCCCCCccccccccccccCCCCCcEEEEeccCCCCCCHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCccc
Q 045267 240 PVYPVGPLVKTGSTAESKNEGCLKWLDDQPLGSVLFVSFGSGGTLSCEQLNELALGLEMSEQRFLWVVRSPNNAANSTFF 319 (482)
Q Consensus 240 ~~~~vGp~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~ 319 (482)
+++.|||++.......+.+++|.+||+.++++++|||||||+..++.+++.++..+++..+.+++|+++.+...
T Consensus 220 ~v~~vGpl~~~~~~~~~~~~~~~~wLd~~~~~sVvyvSfGS~~~l~~~q~~e~~~~l~~s~~pf~wv~r~~~~~------ 293 (442)
T PLN02208 220 KVLLTGPMFPEPDTSKPLEEQWSHFLSGFPPKSVVFCSLGSQIILEKDQFQELCLGMELTGLPFLIAVKPPRGS------ 293 (442)
T ss_pred CEEEEeecccCcCCCCCCHHHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHhCCCcEEEEEeCCCcc------
Confidence 99999999865432234578899999999989999999999999999999999999988999999999864210
Q ss_pred ccCCCCCCCCCCchhHHhhhcCCCeeeccccchhhhhhcccccccccccCchhHHHHhhcCCcEeeccccccchhhHHHH
Q 045267 320 SVNSHKDPYDFLPKGFLDRTKGRGMLVPSWAPQAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAWPLYAEQKMNAVIL 399 (482)
Q Consensus 320 ~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~ipq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv 399 (482)
....+.+|++|+++.++.|+++.+|+||.+||+|++|++||||||+||++||+++|||||++|+++||+.||+++
T Consensus 294 -----~~~~~~lp~~f~~r~~~~g~~v~~W~PQ~~iL~H~~v~~FvtHcG~nS~~Eai~~GVP~l~~P~~~DQ~~na~~~ 368 (442)
T PLN02208 294 -----STVQEGLPEGFEERVKGRGVVWGGWVQQPLILDHPSIGCFVNHCGPGTIWESLVSDCQMVLIPFLSDQVLFTRLM 368 (442)
T ss_pred -----cchhhhCCHHHHHHHhcCCcEeeccCCHHHHhcCCccCeEEccCCchHHHHHHHcCCCEEecCcchhhHHHHHHH
Confidence 011246899999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred HhhcceeeeeccCCCCccCHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhc
Q 045267 400 TEDVKLALRPKANENGIVGRDEIAKVVKALMEGEQ--GKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKWNNN 473 (482)
Q Consensus 400 ~~~~G~G~~l~~~~~~~~~~~~l~~ai~~vl~~~~--~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~~ 473 (482)
++++|+|+.++.++++.++.++|+++|+++|.++. |+++|++++++++.+. ++||+++++++|++.+++.
T Consensus 369 ~~~~g~gv~~~~~~~~~~~~~~l~~ai~~~m~~~~e~g~~~r~~~~~~~~~~~----~~gsS~~~l~~~v~~l~~~ 440 (442)
T PLN02208 369 TEEFEVSVEVSREKTGWFSKESLSNAIKSVMDKDSDLGKLVRSNHTKLKEILV----SPGLLTGYVDKFVEELQEY 440 (442)
T ss_pred HHHhceeEEeccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHh----cCCcHHHHHHHHHHHHHHh
Confidence 66599999998654456999999999999998753 7789999999999985 5889999999999998753
No 4
>PLN02863 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=8.6e-63 Score=500.70 Aligned_cols=445 Identities=31% Similarity=0.537 Sum_probs=339.1
Q ss_pred cCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCCchhhhhhhhcCCCceeEEEec-CCCCCCCcchhhHH
Q 045267 9 AAPHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPPSEAQKSTLESLPSSINSVFLP-VSLNDVAEDARAET 87 (482)
Q Consensus 9 ~~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~ 87 (482)
.++||+++|+|++||++|++.||+.|+.+ |+.|||++++.+... ....... ..++++..+| +...++|.+.+...
T Consensus 8 ~~~HVvl~PfpaqGHi~P~l~LAk~La~~-G~~VTfv~T~~n~~~--~~~~~~~-~~~i~~~~lp~P~~~~lPdG~~~~~ 83 (477)
T PLN02863 8 AGTHVLVFPFPAQGHMIPLLDLTHRLALR-GLTITVLVTPKNLPF--LNPLLSK-HPSIETLVLPFPSHPSIPSGVENVK 83 (477)
T ss_pred CCCEEEEecCcccchHHHHHHHHHHHHhC-CCEEEEEeCCCcHHH--Hhhhccc-CCCeeEEeCCCCCcCCCCCCCcChh
Confidence 46899999999999999999999999887 999999999976542 1111111 1258888887 55566666654322
Q ss_pred H----HHHHHHhhhHHHHHHHHHHhhC--CCccEEEeCCCCccHHHHHHHcCCccEEEccchHHHHHHHhhhhhhhccCC
Q 045267 88 V----ISLTVLRSLPCLRQELTSLVAK--ATVAALVVDLFGTDAFDVAQEFNISPYIFYPSTAMCLSLFLHLEKLDQMVP 161 (482)
Q Consensus 88 ~----~~~~~~~~~~~l~~~l~~~~~~--~~pD~vi~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~ 161 (482)
. ....+......+.+.+.+++++ .+|++||+|.+.+|+..+|+++|||++.|++++++.++.+.+.... .+
T Consensus 84 ~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~p~cvI~D~f~~Wa~dVA~e~GIP~~~F~t~sA~~~~~~~~~~~~---~~ 160 (477)
T PLN02863 84 DLPPSGFPLMIHALGELYAPLLSWFRSHPSPPVAIISDMFLGWTQNLACQLGIRRFVFSPSGAMALSIMYSLWRE---MP 160 (477)
T ss_pred hcchhhHHHHHHHHHHhHHHHHHHHHhCCCCCeEEEEcCchHhHHHHHHHcCCCEEEEeccCHHHHHHHHHHhhc---cc
Confidence 2 1222333334445555555543 4679999999999999999999999999999999988887765421 11
Q ss_pred CCCcccCCCCc---ccCCCCCccccCCCCccccc--ccchHHHHHHHHHhhcccccEEEEcCccccchhHHHHhhhcCCC
Q 045267 162 RDCEYRDMSEP---VQIPGCIPVHGGYLLDPVQD--RKNEAYRWVLHHAKRYKLAEGIIVNSFTDLEGGALKALQHQDEP 236 (482)
Q Consensus 162 ~~~~~~~~~~~---~~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~p 236 (482)
......+.... ..+|++.+++..+++..+.. ........+.+.......++++++|||++||..+.+++....
T Consensus 161 ~~~~~~~~~~~~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~-- 238 (477)
T PLN02863 161 TKINPDDQNEILSFSKIPNCPKYPWWQISSLYRSYVEGDPAWEFIKDSFRANIASWGLVVNSFTELEGIYLEHLKKEL-- 238 (477)
T ss_pred ccccccccccccccCCCCCCCCcChHhCchhhhccCccchHHHHHHHHHhhhccCCEEEEecHHHHHHHHHHHHHhhc--
Confidence 00000011111 13688777787877765431 112223333344444566778999999999999998887631
Q ss_pred CCCCeEeeccCcCCCCC---------C-ccccccccccccCCCCCcEEEEeccCCCCCCHHHHHHHHHHHHhcCCceEEE
Q 045267 237 GKPPVYPVGPLVKTGST---------A-ESKNEGCLKWLDDQPLGSVLFVSFGSGGTLSCEQLNELALGLEMSEQRFLWV 306 (482)
Q Consensus 237 ~~p~~~~vGp~~~~~~~---------~-~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~ 306 (482)
..++++.|||++..... + ...+++|.+||+.++++++|||||||+...+.+++.+++.+|+.++.+|||+
T Consensus 239 ~~~~v~~IGPL~~~~~~~~~~~~~~~~~~~~~~~~~~WLd~~~~~svVyvsfGS~~~~~~~~~~ela~gL~~~~~~flw~ 318 (477)
T PLN02863 239 GHDRVWAVGPILPLSGEKSGLMERGGPSSVSVDDVMTWLDTCEDHKVVYVCFGSQVVLTKEQMEALASGLEKSGVHFIWC 318 (477)
T ss_pred CCCCeEEeCCCcccccccccccccCCcccccHHHHHHHHhcCCCCceEEEEeeceecCCHHHHHHHHHHHHhCCCcEEEE
Confidence 22579999999753210 0 1124578999999998999999999999999999999999999999999999
Q ss_pred EeCCCCCCCCcccccCCCCCCCCCCchhHHhhhcCCCeeeccccchhhhhhcccccccccccCchhHHHHhhcCCcEeec
Q 045267 307 VRSPNNAANSTFFSVNSHKDPYDFLPKGFLDRTKGRGMLVPSWAPQAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAW 386 (482)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~ipq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~ 386 (482)
++.+.... .....+|++|.++..++|+++.+|+||.+||+|++|++||||||+||++||+++|||||++
T Consensus 319 ~~~~~~~~-----------~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~ 387 (477)
T PLN02863 319 VKEPVNEE-----------SDYSNIPSGFEDRVAGRGLVIRGWAPQVAILSHRAVGAFLTHCGWNSVLEGLVAGVPMLAW 387 (477)
T ss_pred ECCCcccc-----------cchhhCCHHHHHHhccCCEEecCCCCHHHHhcCCCcCeEEecCCchHHHHHHHcCCCEEeC
Confidence 97532100 1124589999999999999999999999999999999999999999999999999999999
Q ss_pred cccccchhhHHHHHhhcceeeeeccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHH
Q 045267 387 PLYAEQKMNAVILTEDVKLALRPKANENGIVGRDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQL 466 (482)
Q Consensus 387 P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~ 466 (482)
|++.||+.||+++++++|+|+++...+++..+.+++.++|+++|.+ +++||+||+++++.+++|+.+|||+++++++|
T Consensus 388 P~~~DQ~~na~~v~~~~gvG~~~~~~~~~~~~~~~v~~~v~~~m~~--~~~~r~~a~~l~e~a~~Av~~gGSS~~~l~~~ 465 (477)
T PLN02863 388 PMAADQFVNASLLVDELKVAVRVCEGADTVPDSDELARVFMESVSE--NQVERERAKELRRAALDAIKERGSSVKDLDGF 465 (477)
T ss_pred CccccchhhHHHHHHhhceeEEeccCCCCCcCHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 9999999999997643899999964333447899999999999942 24999999999999999999999999999999
Q ss_pred HHHHhhccC
Q 045267 467 ASKWNNNEG 475 (482)
Q Consensus 467 ~~~~~~~~~ 475 (482)
++.+++...
T Consensus 466 v~~i~~~~~ 474 (477)
T PLN02863 466 VKHVVELGL 474 (477)
T ss_pred HHHHHHhcc
Confidence 999986653
No 5
>PLN00164 glucosyltransferase; Provisional
Probab=100.00 E-value=1.6e-62 Score=500.32 Aligned_cols=455 Identities=40% Similarity=0.703 Sum_probs=341.1
Q ss_pred ccCCEEEEEcCCCCCChHHHHHHHHHHHhcCC----CEEEEEcCCCCCCc--hhhhhhhhc-C--CCceeEEEecCCCCC
Q 045267 8 QAAPHIVLLPSPGMGHLIPLIEFAKRLVHRHH----FLVTFFIPSDGPPS--EAQKSTLES-L--PSSINSVFLPVSLND 78 (482)
Q Consensus 8 ~~~~~ili~~~~~~GH~~P~l~La~~L~~r~G----H~Vt~~~~~~~~~~--~~~~~~~~~-~--~~~~~~~~l~~~~~~ 78 (482)
|+|.||+++|++++||++|++.||+.|+.+ | +.|||++++.+... ......... . ..++++..+|...
T Consensus 1 ~~~~HVVlvPfpaqGHi~P~l~LAk~La~~-g~~~~~~vT~~~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~-- 77 (480)
T PLN00164 1 MAAPTVVLLPVWGSGHLMSMLEAGKRLLAS-SGGGALSLTVLVMPPPTPESASEVAAHVRREAASGLDIRFHHLPAVE-- 77 (480)
T ss_pred CCCCEEEEeCCcchhHHHHHHHHHHHHHhC-CCCCcEEEEEEEcCCCccchhHHHHHHHhhcccCCCCEEEEECCCCC--
Confidence 567899999999999999999999999887 6 79999998765431 011111110 1 1158888888321
Q ss_pred CCcchhhHHHHHHHHHhhhHHHHHHHHHHhhCC--CccEEEeCCCCccHHHHHHHcCCccEEEccchHHHHHHHhhhhhh
Q 045267 79 VAEDARAETVISLTVLRSLPCLRQELTSLVAKA--TVAALVVDLFGTDAFDVAQEFNISPYIFYPSTAMCLSLFLHLEKL 156 (482)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~pD~vi~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~ 156 (482)
.+.+.+....+ +......+...+++++++. ++++||+|.+.+|+..+|+++|||++.|+++++..++.+.+.+..
T Consensus 78 ~p~~~e~~~~~---~~~~~~~~~~~l~~~L~~l~~pv~cIV~D~f~~Wa~dVA~elgIP~v~F~t~sA~~~~~~~~~~~~ 154 (480)
T PLN00164 78 PPTDAAGVEEF---ISRYIQLHAPHVRAAIAGLSCPVAALVVDFFCTPLLDVARELAVPAYVYFTSTAAMLALMLRLPAL 154 (480)
T ss_pred CCCccccHHHH---HHHHHHhhhHHHHHHHHhcCCCceEEEECCcchhHHHHHHHhCCCEEEEECccHHHHHHHhhhhhh
Confidence 23232222222 1212234444455544432 469999999999999999999999999999999988887776543
Q ss_pred hccCCCCCcccCCCCcccCCCCCccccCCCCcccccccchHHHHHHHHHhhcccccEEEEcCccccchhHHHHhhhcC-C
Q 045267 157 DQMVPRDCEYRDMSEPVQIPGCIPVHGGYLLDPVQDRKNEAYRWVLHHAKRYKLAEGIIVNSFTDLEGGALKALQHQD-E 235 (482)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~-~ 235 (482)
..... ..+.....++.+|++.+++..+++..+.......+..+.........++++++|||++||+.+.+++.... .
T Consensus 155 ~~~~~--~~~~~~~~~~~iPGlp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~ 232 (480)
T PLN00164 155 DEEVA--VEFEEMEGAVDVPGLPPVPASSLPAPVMDKKSPNYAWFVYHGRRFMEAAGIIVNTAAELEPGVLAAIADGRCT 232 (480)
T ss_pred ccccc--CcccccCcceecCCCCCCChHHCCchhcCCCcHHHHHHHHHHHhhhhcCEEEEechHHhhHHHHHHHHhcccc
Confidence 22211 11111112345788877888888876544332234444445566677889999999999999998887631 1
Q ss_pred CC--CCCeEeeccCcCCCC--CCccccccccccccCCCCCcEEEEeccCCCCCCHHHHHHHHHHHHhcCCceEEEEeCCC
Q 045267 236 PG--KPPVYPVGPLVKTGS--TAESKNEGCLKWLDDQPLGSVLFVSFGSGGTLSCEQLNELALGLEMSEQRFLWVVRSPN 311 (482)
Q Consensus 236 p~--~p~~~~vGp~~~~~~--~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~ 311 (482)
++ .|+++.|||++.... .....+++|.+||+.++++++|||||||+...+.+++.+++.+|+.++.+|||++..+.
T Consensus 233 ~~~~~~~v~~vGPl~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~q~~ela~gL~~s~~~flWv~~~~~ 312 (480)
T PLN00164 233 PGRPAPTVYPIGPVISLAFTPPAEQPPHECVRWLDAQPPASVVFLCFGSMGFFDAPQVREIAAGLERSGHRFLWVLRGPP 312 (480)
T ss_pred ccCCCCceEEeCCCccccccCCCccchHHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 11 258999999974321 11234567999999999999999999999999999999999999999999999998542
Q ss_pred CCCCCcccccCCCCCCCCCCchhHHhhhcCCCeeeccccchhhhhhcccccccccccCchhHHHHhhcCCcEeecccccc
Q 045267 312 NAANSTFFSVNSHKDPYDFLPKGFLDRTKGRGMLVPSWAPQAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAWPLYAE 391 (482)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~ipq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~D 391 (482)
..+. . ..++.+..+.+|++|.++.+++++++.+|+||.+||+|++|++|||||||||+.||+++|||||++|+++|
T Consensus 313 ~~~~---~-~~~~~~~~~~lp~~~~~~~~~~g~~v~~w~PQ~~iL~h~~vg~fvtH~GwnS~~Eai~~GVP~l~~P~~~D 388 (480)
T PLN00164 313 AAGS---R-HPTDADLDELLPEGFLERTKGRGLVWPTWAPQKEILAHAAVGGFVTHCGWNSVLESLWHGVPMAPWPLYAE 388 (480)
T ss_pred cccc---c-cccccchhhhCChHHHHHhcCCCeEEeecCCHHHHhcCcccCeEEeecccchHHHHHHcCCCEEeCCcccc
Confidence 1000 0 00000112348999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhHHHHHhhcceeeeeccCC--CCccCHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHH
Q 045267 392 QKMNAVILTEDVKLALRPKANE--NGIVGRDEIAKVVKALMEGE--QGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLA 467 (482)
Q Consensus 392 Q~~na~rv~~~~G~G~~l~~~~--~~~~~~~~l~~ai~~vl~~~--~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~ 467 (482)
|+.||+++++.+|+|+.+...+ ++.++.++|+++|+++|.++ +|+.+|++|+++++++++|+.+|||+++++++|+
T Consensus 389 Q~~Na~~~~~~~gvG~~~~~~~~~~~~~~~e~l~~av~~vm~~~~~~~~~~r~~a~~~~~~~~~a~~~gGSS~~~l~~~v 468 (480)
T PLN00164 389 QHLNAFELVADMGVAVAMKVDRKRDNFVEAAELERAVRSLMGGGEEEGRKAREKAAEMKAACRKAVEEGGSSYAALQRLA 468 (480)
T ss_pred chhHHHHHHHHhCeEEEeccccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 9999998754389999986431 23479999999999999875 3778999999999999999999999999999999
Q ss_pred HHHhhcc
Q 045267 468 SKWNNNE 474 (482)
Q Consensus 468 ~~~~~~~ 474 (482)
++++.+-
T Consensus 469 ~~~~~~~ 475 (480)
T PLN00164 469 REIRHGA 475 (480)
T ss_pred HHHHhcc
Confidence 9998653
No 6
>PLN02207 UDP-glycosyltransferase
Probab=100.00 E-value=3.7e-62 Score=492.22 Aligned_cols=443 Identities=30% Similarity=0.572 Sum_probs=333.1
Q ss_pred ccCCEEEEEcCCCCCChHHHHHHHHHHHhcCC--CEEEEEcCCCCCCchhhhhhhh---cCCCceeEEEec-CCCCCCCc
Q 045267 8 QAAPHIVLLPSPGMGHLIPLIEFAKRLVHRHH--FLVTFFIPSDGPPSEAQKSTLE---SLPSSINSVFLP-VSLNDVAE 81 (482)
Q Consensus 8 ~~~~~ili~~~~~~GH~~P~l~La~~L~~r~G--H~Vt~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~-~~~~~~~~ 81 (482)
|++.||+++|+++.||++|++.||+.|+.+ | ..|||++++.+... ....... ....+++|..+| ......+.
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~lA~~La~~-gg~~~vT~~~t~~~~~~-~~~~~~~~~~~~~~~i~~~~lp~~~~~~~~~ 78 (468)
T PLN02207 1 MRNAELIFIPTPTVGHLVPFLEFARRLIEQ-DDRIRITILLMKLQGQS-HLDTYVKSIASSQPFVRFIDVPELEEKPTLG 78 (468)
T ss_pred CCCcEEEEeCCcchhhHHHHHHHHHHHHhC-CCCeEEEEEEcCCCcch-hhHHhhhhccCCCCCeEEEEeCCCCCCCccc
Confidence 667899999999999999999999999887 7 99999998875421 0111111 111258999998 33211111
Q ss_pred ch-hhHHHHHHHHHhhhHHHHHHHHHHhhC----CCc-cEEEeCCCCccHHHHHHHcCCccEEEccchHHHHHHHhhhhh
Q 045267 82 DA-RAETVISLTVLRSLPCLRQELTSLVAK----ATV-AALVVDLFGTDAFDVAQEFNISPYIFYPSTAMCLSLFLHLEK 155 (482)
Q Consensus 82 ~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~----~~p-D~vi~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~ 155 (482)
+. +....+........+.+++.+.+++++ .+| ++||+|.+.+|+..+|+++|||++.|+++++..++.+.+.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~pv~cvV~D~~~~w~~~vA~~~gip~~~f~~~~a~~~~~~~~~~~ 158 (468)
T PLN02207 79 GTQSVEAYVYDVIEKNIPLVRNIVMDILSSLALDGVKVKGFVADFFCLPMIDVAKDVSLPFYVFLTTNSGFLAMMQYLAD 158 (468)
T ss_pred cccCHHHHHHHHHHhcchhHHHHHHHHHHHhccCCCCeEEEEECCcchHHHHHHHHhCCCEEEEECccHHHHHHHHHhhh
Confidence 11 112222233333333334455555432 234 899999999999999999999999999999988887776653
Q ss_pred hhccCCCCCc-ccCCCCcccCCCC-CccccCCCCcccccccchHHHHHHHHHhhcccccEEEEcCccccchhHHHHhhhc
Q 045267 156 LDQMVPRDCE-YRDMSEPVQIPGC-IPVHGGYLLDPVQDRKNEAYRWVLHHAKRYKLAEGIIVNSFTDLEGGALKALQHQ 233 (482)
Q Consensus 156 ~~~~~~~~~~-~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~ 233 (482)
...... .. ......++.+|++ .++...+++..+.... .+..+.+.......++++++||+++||..+..++..
T Consensus 159 ~~~~~~--~~~~~~~~~~~~vPgl~~~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~~~~vlvNtf~~LE~~~~~~~~~- 233 (468)
T PLN02207 159 RHSKDT--SVFVRNSEEMLSIPGFVNPVPANVLPSALFVED--GYDAYVKLAILFTKANGILVNSSFDIEPYSVNHFLD- 233 (468)
T ss_pred cccccc--ccCcCCCCCeEECCCCCCCCChHHCcchhcCCc--cHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHHh-
Confidence 321110 00 0000123457887 5788888887653221 144455555567788999999999999998888755
Q ss_pred CCCCCCCeEeeccCcCCCCCCc-----cccccccccccCCCCCcEEEEeccCCCCCCHHHHHHHHHHHHhcCCceEEEEe
Q 045267 234 DEPGKPPVYPVGPLVKTGSTAE-----SKNEGCLKWLDDQPLGSVLFVSFGSGGTLSCEQLNELALGLEMSEQRFLWVVR 308 (482)
Q Consensus 234 ~~p~~p~~~~vGp~~~~~~~~~-----~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~ 308 (482)
++..|+++.|||++....... ..+++|.+||+.++++++|||||||+...+.+++.++..+|+.++++|||++.
T Consensus 234 -~~~~p~v~~VGPl~~~~~~~~~~~~~~~~~~~~~WLd~~~~~sVVyvSfGS~~~~~~~q~~ela~~l~~~~~~flW~~r 312 (468)
T PLN02207 234 -EQNYPSVYAVGPIFDLKAQPHPEQDLARRDELMKWLDDQPEASVVFLCFGSMGRLRGPLVKEIAHGLELCQYRFLWSLR 312 (468)
T ss_pred -ccCCCcEEEecCCcccccCCCCccccchhhHHHHHHhcCCCCcEEEEEeccCcCCCHHHHHHHHHHHHHCCCcEEEEEe
Confidence 345679999999986432111 12257999999999899999999999999999999999999999999999998
Q ss_pred CCCCCCCCcccccCCCCCCCCCCchhHHhhhcCCCeeeccccchhhhhhcccccccccccCchhHHHHhhcCCcEeeccc
Q 045267 309 SPNNAANSTFFSVNSHKDPYDFLPKGFLDRTKGRGMLVPSWAPQAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAWPL 388 (482)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~ipq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~ 388 (482)
.+.. ...+.+|++|+++.+.++ .+++|+||.+||+|++|++||||||+||+.||+++|||||++|+
T Consensus 313 ~~~~-------------~~~~~lp~~f~er~~~~g-~i~~W~PQ~~IL~H~~vg~FvTH~GwnS~~Eai~~GVP~l~~P~ 378 (468)
T PLN02207 313 TEEV-------------TNDDLLPEGFLDRVSGRG-MICGWSPQVEILAHKAVGGFVSHCGWNSIVESLWFGVPIVTWPM 378 (468)
T ss_pred CCCc-------------cccccCCHHHHhhcCCCe-EEEEeCCHHHHhcccccceeeecCccccHHHHHHcCCCEEecCc
Confidence 5321 112358999998887555 56699999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHhhcceeeeeccC----CCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHH
Q 045267 389 YAEQKMNAVILTEDVKLALRPKAN----ENGIVGRDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALS 464 (482)
Q Consensus 389 ~~DQ~~na~rv~~~~G~G~~l~~~----~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~ 464 (482)
++||+.||+++++.+|+|+.+..+ .++.++.++|+++|+++|.+ ++++||+||+++++.+++|+.+|||++++++
T Consensus 379 ~~DQ~~Na~~~~~~~gvGv~~~~~~~~~~~~~v~~e~i~~av~~vm~~-~~~~~r~~a~~l~~~a~~A~~~GGSS~~~l~ 457 (468)
T PLN02207 379 YAEQQLNAFLMVKELKLAVELKLDYRVHSDEIVNANEIETAIRCVMNK-DNNVVRKRVMDISQMIQRATKNGGSSFAAIE 457 (468)
T ss_pred cccchhhHHHHHHHhCceEEEecccccccCCcccHHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHhcCCCcHHHHHH
Confidence 999999999866558999977421 12246999999999999963 3569999999999999999999999999999
Q ss_pred HHHHHHhhc
Q 045267 465 QLASKWNNN 473 (482)
Q Consensus 465 ~~~~~~~~~ 473 (482)
+|+++++..
T Consensus 458 ~~v~~~~~~ 466 (468)
T PLN02207 458 KFIHDVIGI 466 (468)
T ss_pred HHHHHHHhc
Confidence 999998764
No 7
>PLN02410 UDP-glucoronosyl/UDP-glucosyl transferase family protein
Probab=100.00 E-value=5.9e-62 Score=491.26 Aligned_cols=435 Identities=30% Similarity=0.461 Sum_probs=327.7
Q ss_pred ccCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCCchhhhhhhhcCCCceeEEEecCCCCCCCcc----h
Q 045267 8 QAAPHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPPSEAQKSTLESLPSSINSVFLPVSLNDVAED----A 83 (482)
Q Consensus 8 ~~~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~ 83 (482)
.++.||+++|++++||++|++.||+.|+.+ |+.|||++++.+... . . .. ..++++..+|. ++|.+ .
T Consensus 5 ~~~~HVvlvPfpaqGHi~P~l~LAk~La~~-G~~VT~v~T~~n~~~--~--~-~~-~~~i~~~~ip~---glp~~~~~~~ 74 (451)
T PLN02410 5 PARRRVVLVPVPAQGHISPMMQLAKTLHLK-GFSITIAQTKFNYFS--P--S-DD-FTDFQFVTIPE---SLPESDFKNL 74 (451)
T ss_pred CCCCEEEEECCCccccHHHHHHHHHHHHcC-CCEEEEEeCcccccc--c--c-cC-CCCeEEEeCCC---CCCccccccc
Confidence 346799999999999999999999999887 999999999876431 0 0 11 12588888772 22221 1
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHhh--CCCccEEEeCCCCccHHHHHHHcCCccEEEccchHHHHHHHhhhhhhhcc--
Q 045267 84 RAETVISLTVLRSLPCLRQELTSLVA--KATVAALVVDLFGTDAFDVAQEFNISPYIFYPSTAMCLSLFLHLEKLDQM-- 159 (482)
Q Consensus 84 ~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~pD~vi~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~-- 159 (482)
.....+........+.+.+.++++.. ..++++||+|.+.+|+..+|+++|||++.|++++++..+.+.+.+.....
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~p~~cVI~D~f~~Wa~dvA~~lgIP~v~F~t~~a~~~~~~~~~~~~~~~~~ 154 (451)
T PLN02410 75 GPIEFLHKLNKECQVSFKDCLGQLVLQQGNEIACVVYDEFMYFAEAAAKEFKLPNVIFSTTSATAFVCRSVFDKLYANNV 154 (451)
T ss_pred CHHHHHHHHHHHhHHHHHHHHHHHHhccCCCcEEEEECCcchHHHHHHHHcCCCEEEEEccCHHHHHHHHHHHHHHhccC
Confidence 11122222222334455555555432 23569999999999999999999999999999998887766654332221
Q ss_pred -CCCCCcccCCCCcccCCCCCccccCCCCcccccccchHHHHHHHHHhhcccccEEEEcCccccchhHHHHhhhcCCCCC
Q 045267 160 -VPRDCEYRDMSEPVQIPGCIPVHGGYLLDPVQDRKNEAYRWVLHHAKRYKLAEGIIVNSFTDLEGGALKALQHQDEPGK 238 (482)
Q Consensus 160 -~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~p~~ 238 (482)
.+... ... .....+|++++++..+++.............+ ........++++++|||++||..+.+++... ..
T Consensus 155 ~~~~~~-~~~-~~~~~iPg~~~~~~~dlp~~~~~~~~~~~~~~-~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~---~~ 228 (451)
T PLN02410 155 LAPLKE-PKG-QQNELVPEFHPLRCKDFPVSHWASLESIMELY-RNTVDKRTASSVIINTASCLESSSLSRLQQQ---LQ 228 (451)
T ss_pred CCCccc-ccc-CccccCCCCCCCChHHCcchhcCCcHHHHHHH-HHHhhcccCCEEEEeChHHhhHHHHHHHHhc---cC
Confidence 01000 000 11234688877777777654322211112222 2222356788999999999999999888753 12
Q ss_pred CCeEeeccCcCCCCCC---ccccccccccccCCCCCcEEEEeccCCCCCCHHHHHHHHHHHHhcCCceEEEEeCCCCCCC
Q 045267 239 PPVYPVGPLVKTGSTA---ESKNEGCLKWLDDQPLGSVLFVSFGSGGTLSCEQLNELALGLEMSEQRFLWVVRSPNNAAN 315 (482)
Q Consensus 239 p~~~~vGp~~~~~~~~---~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~ 315 (482)
++++.|||++...... .....+|.+||+.++++++|||||||+...+.+++.++..+|+.++++|+|++..+...
T Consensus 229 ~~v~~vGpl~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gLe~s~~~FlWv~r~~~~~-- 306 (451)
T PLN02410 229 IPVYPIGPLHLVASAPTSLLEENKSCIEWLNKQKKNSVIFVSLGSLALMEINEVMETASGLDSSNQQFLWVIRPGSVR-- 306 (451)
T ss_pred CCEEEecccccccCCCccccccchHHHHHHHhCCCCcEEEEEccccccCCHHHHHHHHHHHHhcCCCeEEEEccCccc--
Confidence 4799999997543211 12234578999999999999999999999999999999999999999999999843210
Q ss_pred CcccccCCCCCCCCCCchhHHhhhcCCCeeeccccchhhhhhcccccccccccCchhHHHHhhcCCcEeeccccccchhh
Q 045267 316 STFFSVNSHKDPYDFLPKGFLDRTKGRGMLVPSWAPQAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAWPLYAEQKMN 395 (482)
Q Consensus 316 ~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~ipq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~n 395 (482)
++ +....+|++|+++.++.+ ++.+|+||.+||+|++|++||||||+||+.||+++|||||++|++.||+.|
T Consensus 307 ------~~--~~~~~lp~~f~er~~~~g-~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~DQ~~n 377 (451)
T PLN02410 307 ------GS--EWIESLPKEFSKIISGRG-YIVKWAPQKEVLSHPAVGGFWSHCGWNSTLESIGEGVPMICKPFSSDQKVN 377 (451)
T ss_pred ------cc--chhhcCChhHHHhccCCe-EEEccCCHHHHhCCCccCeeeecCchhHHHHHHHcCCCEEeccccccCHHH
Confidence 00 112358999999987665 556999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcceeeeeccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhc
Q 045267 396 AVILTEDVKLALRPKANENGIVGRDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKWNNN 473 (482)
Q Consensus 396 a~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~~ 473 (482)
|+++++.+|+|+.+. .. +++++|+++|+++|.+++|++||++|+++++++++|+.+|||+.+++++|+++++++
T Consensus 378 a~~~~~~~~~G~~~~-~~---~~~~~v~~av~~lm~~~~~~~~r~~a~~l~~~~~~a~~~gGsS~~~l~~fv~~~~~~ 451 (451)
T PLN02410 378 ARYLECVWKIGIQVE-GD---LDRGAVERAVKRLMVEEEGEEMRKRAISLKEQLRASVISGGSSHNSLEEFVHFMRTL 451 (451)
T ss_pred HHHHHHHhCeeEEeC-Cc---ccHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhC
Confidence 999987469999997 34 999999999999998877889999999999999999999999999999999998763
No 8
>PLN02173 UDP-glucosyl transferase family protein
Probab=100.00 E-value=6.9e-62 Score=488.53 Aligned_cols=419 Identities=29% Similarity=0.459 Sum_probs=324.5
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCCchhhhhhhhcCCCceeEEEecCCCCCCCcc-hh----
Q 045267 10 APHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPPSEAQKSTLESLPSSINSVFLPVSLNDVAED-AR---- 84 (482)
Q Consensus 10 ~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~---- 84 (482)
+.||+++|++++||++|++.||+.|+.+ |+.|||++++.+... +......++++..+|. ++|.+ .+
T Consensus 5 ~~hvv~~P~paqGHi~P~l~lAk~La~~-G~~vT~v~t~~~~~~-----~~~~~~~~i~~~~ipd---glp~~~~~~~~~ 75 (449)
T PLN02173 5 RGHVLAVPFPSQGHITPIRQFCKRLHSK-GFKTTHTLTTFIFNT-----IHLDPSSPISIATISD---GYDQGGFSSAGS 75 (449)
T ss_pred CcEEEEecCcccccHHHHHHHHHHHHcC-CCEEEEEECCchhhh-----cccCCCCCEEEEEcCC---CCCCcccccccC
Confidence 3599999999999999999999999887 999999999865431 1111123588888872 33331 11
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHhhCCCc-cEEEeCCCCccHHHHHHHcCCccEEEccchHHHHHHHhhhhhhhccCCCC
Q 045267 85 AETVISLTVLRSLPCLRQELTSLVAKATV-AALVVDLFGTDAFDVAQEFNISPYIFYPSTAMCLSLFLHLEKLDQMVPRD 163 (482)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~p-D~vi~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (482)
....+........+.+.+.++++....+| ++||+|.+.+|+..+|+++|||++.|+++++.....+.+ +.... .
T Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~Pv~cvV~D~f~~Wa~dVA~elgIP~v~F~~~~a~~~~~~~~-~~~~~--~-- 150 (449)
T PLN02173 76 VPEYLQNFKTFGSKTVADIIRKHQSTDNPITCIVYDSFMPWALDLAREFGLAAAPFFTQSCAVNYINYL-SYINN--G-- 150 (449)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhhccCCCceEEEECCcchhHHHHHHHhCCCEEEEechHHHHHHHHHh-HHhcc--C--
Confidence 11111112123334444444443222356 999999999999999999999999999988777655443 11110 0
Q ss_pred CcccCCCCcccCCCCCccccCCCCcccccc--cchHHHHHHHHHhhcccccEEEEcCccccchhHHHHhhhcCCCCCCCe
Q 045267 164 CEYRDMSEPVQIPGCIPVHGGYLLDPVQDR--KNEAYRWVLHHAKRYKLAEGIIVNSFTDLEGGALKALQHQDEPGKPPV 241 (482)
Q Consensus 164 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~p~~p~~ 241 (482)
...+.+|+++++...+++..+... ....+..+.+.......++++++|||++||..+.+++... +.+
T Consensus 151 ------~~~~~~pg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~-----~~v 219 (449)
T PLN02173 151 ------SLTLPIKDLPLLELQDLPTFVTPTGSHLAYFEMVLQQFTNFDKADFVLVNSFHDLDLHENELLSKV-----CPV 219 (449)
T ss_pred ------CccCCCCCCCCCChhhCChhhcCCCCchHHHHHHHHHHhhhccCCEEEEeCHHHhhHHHHHHHHhc-----CCe
Confidence 012346888777777887766432 1223444555566677889999999999999998888542 369
Q ss_pred EeeccCcCCC-------CCCc--------cccccccccccCCCCCcEEEEeccCCCCCCHHHHHHHHHHHHhcCCceEEE
Q 045267 242 YPVGPLVKTG-------STAE--------SKNEGCLKWLDDQPLGSVLFVSFGSGGTLSCEQLNELALGLEMSEQRFLWV 306 (482)
Q Consensus 242 ~~vGp~~~~~-------~~~~--------~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~ 306 (482)
+.|||++... .... ..+++|.+||+.++++++|||||||+...+.+++.++..+| .+.+|+|+
T Consensus 220 ~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~WLd~~~~~svvyvsfGS~~~~~~~~~~ela~gL--s~~~flWv 297 (449)
T PLN02173 220 LTIGPTVPSMYLDQQIKSDNDYDLNLFDLKEAALCTDWLDKRPQGSVVYIAFGSMAKLSSEQMEEIASAI--SNFSYLWV 297 (449)
T ss_pred eEEcccCchhhccccccccccccccccccccchHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHh--cCCCEEEE
Confidence 9999997421 0000 12345889999999999999999999999999999999999 67789999
Q ss_pred EeCCCCCCCCcccccCCCCCCCCCCchhHHhhhcCCCeeeccccchhhhhhcccccccccccCchhHHHHhhcCCcEeec
Q 045267 307 VRSPNNAANSTFFSVNSHKDPYDFLPKGFLDRTKGRGMLVPSWAPQAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAW 386 (482)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~ipq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~ 386 (482)
+..+.. ..+|+++.++..+.|+++.+|+||.+||+|++|++||||||+||++||+.+|||||++
T Consensus 298 vr~~~~----------------~~lp~~~~~~~~~~~~~i~~W~PQ~~iL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~ 361 (449)
T PLN02173 298 VRASEE----------------SKLPPGFLETVDKDKSLVLKWSPQLQVLSNKAIGCFMTHCGWNSTMEGLSLGVPMVAM 361 (449)
T ss_pred Eeccch----------------hcccchHHHhhcCCceEEeCCCCHHHHhCCCccceEEecCccchHHHHHHcCCCEEec
Confidence 975321 2488999999888899999999999999999999999999999999999999999999
Q ss_pred cccccchhhHHHHHhhcceeeeeccCC-CCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHH
Q 045267 387 PLYAEQKMNAVILTEDVKLALRPKANE-NGIVGRDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQ 465 (482)
Q Consensus 387 P~~~DQ~~na~rv~~~~G~G~~l~~~~-~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~ 465 (482)
|++.||+.||+++++.+|+|+.+..++ ++.++.++|+++|+++|.+++|+++|+||+++++++++|.++|||+.+++++
T Consensus 362 P~~~DQ~~Na~~v~~~~g~Gv~v~~~~~~~~~~~e~v~~av~~vm~~~~~~~~r~~a~~~~~~a~~Av~~gGSS~~~l~~ 441 (449)
T PLN02173 362 PQWTDQPMNAKYIQDVWKVGVRVKAEKESGIAKREEIEFSIKEVMEGEKSKEMKENAGKWRDLAVKSLSEGGSTDININT 441 (449)
T ss_pred CchhcchHHHHHHHHHhCceEEEeecccCCcccHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 999999999999998469999986543 2457999999999999988778899999999999999999999999999999
Q ss_pred HHHHHh
Q 045267 466 LASKWN 471 (482)
Q Consensus 466 ~~~~~~ 471 (482)
|+++++
T Consensus 442 ~v~~~~ 447 (449)
T PLN02173 442 FVSKIQ 447 (449)
T ss_pred HHHHhc
Confidence 999875
No 9
>PLN02670 transferase, transferring glycosyl groups
Probab=100.00 E-value=3.3e-62 Score=493.06 Aligned_cols=441 Identities=28% Similarity=0.448 Sum_probs=337.2
Q ss_pred cCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCCchhhhhhhhcCCCceeEEEec-CCCCCCCcchhhHH
Q 045267 9 AAPHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPPSEAQKSTLESLPSSINSVFLP-VSLNDVAEDARAET 87 (482)
Q Consensus 9 ~~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~ 87 (482)
.+.||+++|++++||++|++.||+.|+.+ |+.|||++++.+... ..........++++..+| +..++++.+.+...
T Consensus 5 ~~~HVvl~P~paqGHi~P~l~LAk~La~~-G~~vT~v~t~~n~~~--~~~~~~~~~~~i~~~~lp~p~~dglp~~~~~~~ 81 (472)
T PLN02670 5 EVLHVAMFPWLAMGHLIPFLRLSKLLAQK-GHKISFISTPRNLHR--LPKIPSQLSSSITLVSFPLPSVPGLPSSAESST 81 (472)
T ss_pred CCcEEEEeCChhhhHHHHHHHHHHHHHhC-CCEEEEEeCCchHHh--hhhccccCCCCeeEEECCCCccCCCCCCccccc
Confidence 35799999999999999999999999988 999999999976542 111111123358999998 55566775433222
Q ss_pred HH----HHHHHhhhHHHHHHHHHHhhCCCccEEEeCCCCccHHHHHHHcCCccEEEccchHHHHHHHhhhhhhhccCCCC
Q 045267 88 VI----SLTVLRSLPCLRQELTSLVAKATVAALVVDLFGTDAFDVAQEFNISPYIFYPSTAMCLSLFLHLEKLDQMVPRD 163 (482)
Q Consensus 88 ~~----~~~~~~~~~~l~~~l~~~~~~~~pD~vi~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (482)
.+ ...+......+.+.+++++++.++++||+|.+.+|+..+|+++|||++.|+++++...+.+.+........
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~cvI~D~f~~wa~~vA~~~gIP~~~f~~~~a~~~~~~~~~~~~~~~~--- 158 (472)
T PLN02670 82 DVPYTKQQLLKKAFDLLEPPLTTFLETSKPDWIIYDYASHWLPSIAAELGISKAFFSLFTAATLSFIGPPSSLMEGG--- 158 (472)
T ss_pred ccchhhHHHHHHHHHHhHHHHHHHHHhCCCcEEEECCcchhHHHHHHHcCCCEEEEehhhHHHHHHHhhhHhhhhcc---
Confidence 11 12334455567777777777678999999999999999999999999999999888777765332111110
Q ss_pred CcccCCCCcc-cCCCCCc------cccCCCCccccc--ccchHHHHHHHHHhhcccccEEEEcCccccchhHHHHhhhcC
Q 045267 164 CEYRDMSEPV-QIPGCIP------VHGGYLLDPVQD--RKNEAYRWVLHHAKRYKLAEGIIVNSFTDLEGGALKALQHQD 234 (482)
Q Consensus 164 ~~~~~~~~~~-~~p~~~~------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~ 234 (482)
......... .+|++.| +...+++..+.. .....+..+.+.......++++++|||++||..+.+++...
T Consensus 159 -~~~~~~~~~~~~p~~~P~~~~~~~~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~gvlvNTf~eLE~~~l~~l~~~- 236 (472)
T PLN02670 159 -DLRSTAEDFTVVPPWVPFESNIVFRYHEVTKYVEKTEEDETGPSDSVRFGFAIGGSDVVIIRSSPEFEPEWFDLLSDL- 236 (472)
T ss_pred -cCCCccccccCCCCcCCCCccccccHHHhhHHHhccCccchHHHHHHHHHhhcccCCEEEEeCHHHHhHHHHHHHHHh-
Confidence 111111111 2455433 223355544421 11122344445555567788999999999999999998753
Q ss_pred CCCCCCeEeeccCcCCC-C--CCc----cccccccccccCCCCCcEEEEeccCCCCCCHHHHHHHHHHHHhcCCceEEEE
Q 045267 235 EPGKPPVYPVGPLVKTG-S--TAE----SKNEGCLKWLDDQPLGSVLFVSFGSGGTLSCEQLNELALGLEMSEQRFLWVV 307 (482)
Q Consensus 235 ~p~~p~~~~vGp~~~~~-~--~~~----~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~ 307 (482)
..+.++.|||+.... . ... ..+++|.+||+.++++++|||||||+..++.+++.++..+|+.++++|||++
T Consensus 237 --~~~~v~~VGPl~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gl~~s~~~FlWv~ 314 (472)
T PLN02670 237 --YRKPIIPIGFLPPVIEDDEEDDTIDVKGWVRIKEWLDKQRVNSVVYVALGTEASLRREEVTELALGLEKSETPFFWVL 314 (472)
T ss_pred --hCCCeEEEecCCccccccccccccccchhHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEE
Confidence 124799999997531 1 101 1125688999999889999999999999999999999999999999999999
Q ss_pred eCCCCCCCCcccccCCCCCCCCCCchhHHhhhcCCCeeeccccchhhhhhcccccccccccCchhHHHHhhcCCcEeecc
Q 045267 308 RSPNNAANSTFFSVNSHKDPYDFLPKGFLDRTKGRGMLVPSWAPQAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAWP 387 (482)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~ipq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P 387 (482)
...... +.+....+|++|.++.+.+++++.+|+||.+||+|++|++||||||+||++||+++|||||++|
T Consensus 315 r~~~~~----------~~~~~~~lp~~f~~~~~~rG~vv~~W~PQ~~IL~H~~v~~FvtHcGwnS~~Eai~~GVP~l~~P 384 (472)
T PLN02670 315 RNEPGT----------TQNALEMLPDGFEERVKGRGMIHVGWVPQVKILSHESVGGFLTHCGWNSVVEGLGFGRVLILFP 384 (472)
T ss_pred cCCccc----------ccchhhcCChHHHHhccCCCeEEeCcCCHHHHhcCcccceeeecCCcchHHHHHHcCCCEEeCc
Confidence 853210 0022345899999999999999999999999999999999999999999999999999999999
Q ss_pred ccccchhhHHHHHhhcceeeeeccCC-CCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHH
Q 045267 388 LYAEQKMNAVILTEDVKLALRPKANE-NGIVGRDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQL 466 (482)
Q Consensus 388 ~~~DQ~~na~rv~~~~G~G~~l~~~~-~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~ 466 (482)
++.||+.||+++++ +|+|+.++..+ ++.++.++|+++|+++|.++.|++||+||+++++.+++ .+....++++|
T Consensus 385 ~~~DQ~~Na~~v~~-~g~Gv~l~~~~~~~~~~~e~i~~av~~vm~~~~g~~~r~~a~~l~~~~~~----~~~~~~~~~~~ 459 (472)
T PLN02670 385 VLNEQGLNTRLLHG-KKLGLEVPRDERDGSFTSDSVAESVRLAMVDDAGEEIRDKAKEMRNLFGD----MDRNNRYVDEL 459 (472)
T ss_pred chhccHHHHHHHHH-cCeeEEeeccccCCcCcHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHhC----cchhHHHHHHH
Confidence 99999999999999 99999997533 34589999999999999887778999999999999995 78888999999
Q ss_pred HHHHhhcc
Q 045267 467 ASKWNNNE 474 (482)
Q Consensus 467 ~~~~~~~~ 474 (482)
++++.++-
T Consensus 460 ~~~l~~~~ 467 (472)
T PLN02670 460 VHYLRENR 467 (472)
T ss_pred HHHHHHhc
Confidence 99998765
No 10
>PLN02210 UDP-glucosyl transferase
Probab=100.00 E-value=1.7e-61 Score=489.79 Aligned_cols=429 Identities=23% Similarity=0.417 Sum_probs=321.0
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHH--HHhcCCCEEEEEcCCCCCCchhhhhhhhcCCCceeEEEecCCCCCCCcchhhHH
Q 045267 10 APHIVLLPSPGMGHLIPLIEFAKR--LVHRHHFLVTFFIPSDGPPSEAQKSTLESLPSSINSVFLPVSLNDVAEDARAET 87 (482)
Q Consensus 10 ~~~ili~~~~~~GH~~P~l~La~~--L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 87 (482)
+.||+++|+|++||++|++.||+. |++| |++|||++++.+.+. ....... ...+++..++ ++++.+...
T Consensus 8 ~~hvv~~P~pa~GHi~P~l~La~~L~L~~~-G~~VT~v~t~~~~~~--~~~~~~~-~~~~~~~~~~---~glp~~~~~-- 78 (456)
T PLN02210 8 ETHVLMVTLAFQGHINPMLKLAKHLSLSSK-NLHFTLATTEQARDL--LSTVEKP-RRPVDLVFFS---DGLPKDDPR-- 78 (456)
T ss_pred CCEEEEeCCcccccHHHHHHHHHHHHhhcC-CcEEEEEeccchhhh--hccccCC-CCceEEEECC---CCCCCCccc--
Confidence 469999999999999999999999 5576 999999999976442 1111110 1134544443 344443311
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhCCCccEEEeCCCCccHHHHHHHcCCccEEEccchHHHHHHHhhhhhhhccCCCCCccc
Q 045267 88 VISLTVLRSLPCLRQELTSLVAKATVAALVVDLFGTDAFDVAQEFNISPYIFYPSTAMCLSLFLHLEKLDQMVPRDCEYR 167 (482)
Q Consensus 88 ~~~~~~~~~~~~l~~~l~~~~~~~~pD~vi~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (482)
.....+......+...+++++++.+||+||+|.+.+|+..+|+++|||.+.|++.++..++.+.+........+ . ..
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~vI~D~~~~w~~~vA~~lgIP~~~f~~~sa~~~~~~~~~~~~~~~~~--~-~~ 155 (456)
T PLN02210 79 APETLLKSLNKVGAKNLSKIIEEKRYSCIISSPFTPWVPAVAAAHNIPCAILWIQACGAYSVYYRYYMKTNSFP--D-LE 155 (456)
T ss_pred CHHHHHHHHHHhhhHHHHHHHhcCCCcEEEECCcchhHHHHHHHhCCCEEEEecccHHHHHHHHhhhhccCCCC--c-cc
Confidence 11122222233444556666666689999999999999999999999999999988887776665432111111 0 11
Q ss_pred CCCCcccCCCCCccccCCCCcccccccchHHHHHHHHH-hhcccccEEEEcCccccchhHHHHhhhcCCCCCCCeEeecc
Q 045267 168 DMSEPVQIPGCIPVHGGYLLDPVQDRKNEAYRWVLHHA-KRYKLAEGIIVNSFTDLEGGALKALQHQDEPGKPPVYPVGP 246 (482)
Q Consensus 168 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~p~~p~~~~vGp 246 (482)
+....+.+|++.++...+++..+.......+..+.... .....++++++|||.++|..+.+++... +++++|||
T Consensus 156 ~~~~~~~~Pgl~~~~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~-----~~v~~VGP 230 (456)
T PLN02210 156 DLNQTVELPALPLLEVRDLPSFMLPSGGAHFNNLMAEFADCLRYVKWVLVNSFYELESEIIESMADL-----KPVIPIGP 230 (456)
T ss_pred ccCCeeeCCCCCCCChhhCChhhhcCCchHHHHHHHHHHHhcccCCEEEEeCHHHHhHHHHHHHhhc-----CCEEEEcc
Confidence 11122446887767777777655443332233333223 3455678999999999999998887652 47999999
Q ss_pred CcCC-----CCCC---------ccccccccccccCCCCCcEEEEeccCCCCCCHHHHHHHHHHHHhcCCceEEEEeCCCC
Q 045267 247 LVKT-----GSTA---------ESKNEGCLKWLDDQPLGSVLFVSFGSGGTLSCEQLNELALGLEMSEQRFLWVVRSPNN 312 (482)
Q Consensus 247 ~~~~-----~~~~---------~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~ 312 (482)
++.. .... +..+++|.+|++.++++++|||||||+...+.+++.++..+|+..+.+|||+++....
T Consensus 231 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~e~a~~l~~~~~~flw~~~~~~~ 310 (456)
T PLN02210 231 LVSPFLLGDDEEETLDGKNLDMCKSDDCCMEWLDKQARSSVVYISFGSMLESLENQVETIAKALKNRGVPFLWVIRPKEK 310 (456)
T ss_pred cCchhhcCcccccccccccccccccchHHHHHHhCCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCEEEEEeCCcc
Confidence 9742 1100 1234568899999998999999999998899999999999999999999999975321
Q ss_pred CCCCcccccCCCCCCCCCCchhHHhhhcCCCeeeccccchhhhhhcccccccccccCchhHHHHhhcCCcEeeccccccc
Q 045267 313 AANSTFFSVNSHKDPYDFLPKGFLDRTKGRGMLVPSWAPQAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAWPLYAEQ 392 (482)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~ipq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ 392 (482)
...++++.++....+.++.+|+||.+||+|++|++||||||+||++||+++|||||++|+++||
T Consensus 311 ----------------~~~~~~~~~~~~~~~g~v~~w~PQ~~iL~h~~vg~FitH~G~nS~~Eai~~GVP~v~~P~~~DQ 374 (456)
T PLN02210 311 ----------------AQNVQVLQEMVKEGQGVVLEWSPQEKILSHMAISCFVTHCGWNSTIETVVAGVPVVAYPSWTDQ 374 (456)
T ss_pred ----------------ccchhhHHhhccCCCeEEEecCCHHHHhcCcCcCeEEeeCCcccHHHHHHcCCCEEeccccccc
Confidence 1133556666532334567999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHhhcceeeeeccCC-CCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHh
Q 045267 393 KMNAVILTEDVKLALRPKANE-NGIVGRDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKWN 471 (482)
Q Consensus 393 ~~na~rv~~~~G~G~~l~~~~-~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~ 471 (482)
+.||+++++.+|+|+.+...+ ++.++.++|+++|+++|.+++|+++|+||++|++.+++|+.+|||+.+++++|+++++
T Consensus 375 ~~na~~~~~~~g~G~~l~~~~~~~~~~~~~l~~av~~~m~~~~g~~~r~~a~~l~~~a~~Av~~gGSS~~~l~~~v~~~~ 454 (456)
T PLN02210 375 PIDARLLVDVFGIGVRMRNDAVDGELKVEEVERCIEAVTEGPAAADIRRRAAELKHVARLALAPGGSSARNLDLFISDIT 454 (456)
T ss_pred HHHHHHHHHHhCeEEEEeccccCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 999999986589999986432 3459999999999999988778889999999999999999999999999999999875
No 11
>PLN03004 UDP-glycosyltransferase
Probab=100.00 E-value=1e-61 Score=487.56 Aligned_cols=437 Identities=38% Similarity=0.687 Sum_probs=323.4
Q ss_pred ccCCEEEEEcCCCCCChHHHHHHHHHHHhcCC--CEEEEE--cCCCCCCchh--hhhhhhcCCCceeEEEecCC--CCCC
Q 045267 8 QAAPHIVLLPSPGMGHLIPLIEFAKRLVHRHH--FLVTFF--IPSDGPPSEA--QKSTLESLPSSINSVFLPVS--LNDV 79 (482)
Q Consensus 8 ~~~~~ili~~~~~~GH~~P~l~La~~L~~r~G--H~Vt~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~--~~~~ 79 (482)
|.+.||+++|++++||++|++.||+.|+.+ | +.||+. +++.+..... ....... ..++++..+|.. .++.
T Consensus 1 ~~~~Hvvl~P~p~qGHi~P~l~LA~~La~~-g~~~~vti~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~lp~~~~~~~~ 78 (451)
T PLN03004 1 MGEEAIVLYPAPPIGHLVSMVELGKTILSK-NPSLSIHIILVPPPYQPESTATYISSVSSS-FPSITFHHLPAVTPYSSS 78 (451)
T ss_pred CCCcEEEEeCCcccchHHHHHHHHHHHHhC-CCceEEEEEEecCcchhhhhhhhhccccCC-CCCeEEEEcCCCCCCCCc
Confidence 567899999999999999999999999887 8 556664 4443222100 0011111 125899988822 1121
Q ss_pred Ccch-hhHHHHHHHHHhhhHHHHHHHHHHhhCCCccEEEeCCCCccHHHHHHHcCCccEEEccchHHHHHHHhhhhhhhc
Q 045267 80 AEDA-RAETVISLTVLRSLPCLRQELTSLVAKATVAALVVDLFGTDAFDVAQEFNISPYIFYPSTAMCLSLFLHLEKLDQ 158 (482)
Q Consensus 80 ~~~~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pD~vi~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~ 158 (482)
.... .....+........+.+.+.+.++....++++||+|.+.+|+..+|+++|||++.|++++++.++.+.+.+....
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~pv~cII~D~~~~Wa~~vA~~lgIP~v~F~t~sA~~~~~~~~~~~~~~ 158 (451)
T PLN03004 79 STSRHHHESLLLEILCFSNPSVHRTLFSLSRNFNVRAMIIDFFCTAVLDITADFTFPVYFFYTSGAACLAFSFYLPTIDE 158 (451)
T ss_pred cccccCHHHHHHHHHHhhhHHHHHHHHhcCCCCCceEEEECCcchhHHHHHHHhCCCEEEEeCHhHHHHHHHHHHHhccc
Confidence 1111 111122222233344455555544222245999999999999999999999999999999998888877654322
Q ss_pred cCCCCCcccCCCCcccCCCCCccccCCCCcccccccchHHHHHHHHHhhcccccEEEEcCccccchhHHHHhhhcCCCCC
Q 045267 159 MVPRDCEYRDMSEPVQIPGCIPVHGGYLLDPVQDRKNEAYRWVLHHAKRYKLAEGIIVNSFTDLEGGALKALQHQDEPGK 238 (482)
Q Consensus 159 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~p~~ 238 (482)
..+. ....+ ..++.+|+++++...+++..+..+....+..+.+.......++++++|||++||..+.+++.... ..
T Consensus 159 ~~~~-~~~~~-~~~v~iPg~p~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vl~NTf~eLE~~~l~~l~~~~--~~ 234 (451)
T PLN03004 159 TTPG-KNLKD-IPTVHIPGVPPMKGSDMPKAVLERDDEVYDVFIMFGKQLSKSSGIIINTFDALENRAIKAITEEL--CF 234 (451)
T ss_pred cccc-ccccc-CCeecCCCCCCCChHHCchhhcCCchHHHHHHHHHHHhhcccCeeeeeeHHHhHHHHHHHHHhcC--CC
Confidence 1110 00111 12345788887888888876654433334455555566677889999999999999998886521 12
Q ss_pred CCeEeeccCcCCCC-C-C-ccccccccccccCCCCCcEEEEeccCCCCCCHHHHHHHHHHHHhcCCceEEEEeCCCCCCC
Q 045267 239 PPVYPVGPLVKTGS-T-A-ESKNEGCLKWLDDQPLGSVLFVSFGSGGTLSCEQLNELALGLEMSEQRFLWVVRSPNNAAN 315 (482)
Q Consensus 239 p~~~~vGp~~~~~~-~-~-~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~ 315 (482)
++++.|||++.... . . ...+.+|.+||+.++++++|||||||+...+.+++.++..+|+.++++|||++..+...
T Consensus 235 ~~v~~vGPl~~~~~~~~~~~~~~~~c~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~~FlW~~r~~~~~-- 312 (451)
T PLN03004 235 RNIYPIGPLIVNGRIEDRNDNKAVSCLNWLDSQPEKSVVFLCFGSLGLFSKEQVIEIAVGLEKSGQRFLWVVRNPPEL-- 312 (451)
T ss_pred CCEEEEeeeccCccccccccchhhHHHHHHHhCCCCceEEEEecccccCCHHHHHHHHHHHHHCCCCEEEEEcCCccc--
Confidence 57999999975321 1 0 11234688999999989999999999999999999999999999999999999853110
Q ss_pred CcccccCCCCCCCC-CCchhHHhhhcCCCeeeccccchhhhhhcccccccccccCchhHHHHhhcCCcEeeccccccchh
Q 045267 316 STFFSVNSHKDPYD-FLPKGFLDRTKGRGMLVPSWAPQAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAWPLYAEQKM 394 (482)
Q Consensus 316 ~~~~~~~~~~~~~~-~lp~~~~~~~~~~~v~~~~~ipq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~ 394 (482)
..+..... .+|++|+++.++.|+++.+|+||.+||+|+++++||||||+||+.||+++|||||++|++.||+.
T Consensus 313 ------~~~~~~~~~~lp~gf~er~~~~g~~v~~W~PQ~~iL~H~~v~~FvTH~G~nS~lEal~~GVP~v~~P~~~DQ~~ 386 (451)
T PLN03004 313 ------EKTELDLKSLLPEGFLSRTEDKGMVVKSWAPQVPVLNHKAVGGFVTHCGWNSILEAVCAGVPMVAWPLYAEQRF 386 (451)
T ss_pred ------cccccchhhhCChHHHHhccCCcEEEEeeCCHHHHhCCCccceEeccCcchHHHHHHHcCCCEEeccccccchh
Confidence 00000112 38999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhcceeeeeccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHH
Q 045267 395 NAVILTEDVKLALRPKANENGIVGRDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTK 461 (482)
Q Consensus 395 na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~ 461 (482)
||+++++++|+|+.++..+++.++.++|+++|+++|.|+ +||++++++++..+.|+.+|||+++
T Consensus 387 na~~~~~~~g~g~~l~~~~~~~~~~e~l~~av~~vm~~~---~~r~~a~~~~~~a~~Av~~GGSS~~ 450 (451)
T PLN03004 387 NRVMIVDEIKIAISMNESETGFVSSTEVEKRVQEIIGEC---PVRERTMAMKNAAELALTETGSSHT 450 (451)
T ss_pred hHHHHHHHhCceEEecCCcCCccCHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 999998548999999764334589999999999999876 9999999999999999999999864
No 12
>PLN02764 glycosyltransferase family protein
Probab=100.00 E-value=3.7e-61 Score=481.66 Aligned_cols=431 Identities=21% Similarity=0.385 Sum_probs=326.0
Q ss_pred cCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCCchhhhhhhhcCCCc--eeEEEecCCCCCCCcchhhH
Q 045267 9 AAPHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPPSEAQKSTLESLPSS--INSVFLPVSLNDVAEDARAE 86 (482)
Q Consensus 9 ~~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~~~ 86 (482)
.++||+++|++++||++|++.||+.|+.+ |+.|||++++.+... .... ...+.+ +.+..+| ..++++.+.+..
T Consensus 4 ~~~Hvvl~P~paqGHi~P~l~LAk~La~~-g~~vT~~tt~~~~~~--~~~~-~~~~~~~~v~~~~~p-~~~glp~g~e~~ 78 (453)
T PLN02764 4 LKFHVLMYPWFATGHMTPFLFLANKLAEK-GHTVTFLLPKKALKQ--LEHL-NLFPHNIVFRSVTVP-HVDGLPVGTETV 78 (453)
T ss_pred CCcEEEEECCcccccHHHHHHHHHHHHhC-CCEEEEEeCcchhhh--hccc-ccCCCCceEEEEECC-CcCCCCCccccc
Confidence 36899999999999999999999999877 999999999876442 1111 111213 4444454 234666553321
Q ss_pred ----HHHHHHHHhhhHHHHHHHHHHhhCCCccEEEeCCCCccHHHHHHHcCCccEEEccchHHHHHHHhhhhhhhccCCC
Q 045267 87 ----TVISLTVLRSLPCLRQELTSLVAKATVAALVVDLFGTDAFDVAQEFNISPYIFYPSTAMCLSLFLHLEKLDQMVPR 162 (482)
Q Consensus 87 ----~~~~~~~~~~~~~l~~~l~~~~~~~~pD~vi~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (482)
......+......++..+++++++.+||+||+|. .+|+..+|+++|||++.|+++++..++.+.. +. ...
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~~iV~D~-~~w~~~vA~~~gIP~~~f~~~~a~~~~~~~~-~~--~~~-- 152 (453)
T PLN02764 79 SEIPVTSADLLMSAMDLTRDQVEVVVRAVEPDLIFFDF-AHWIPEVARDFGLKTVKYVVVSASTIASMLV-PG--GEL-- 152 (453)
T ss_pred ccCChhHHHHHHHHHHHhHHHHHHHHHhCCCCEEEECC-chhHHHHHHHhCCCEEEEEcHHHHHHHHHhc-cc--ccC--
Confidence 1112223334446667777777666889999996 8899999999999999999999987766642 10 000
Q ss_pred CCcccCCCCcccCCCCCc----cccCCCCcccc-cc--cchHHHHHHHHH-hhcccccEEEEcCccccchhHHHHhhhcC
Q 045267 163 DCEYRDMSEPVQIPGCIP----VHGGYLLDPVQ-DR--KNEAYRWVLHHA-KRYKLAEGIIVNSFTDLEGGALKALQHQD 234 (482)
Q Consensus 163 ~~~~~~~~~~~~~p~~~~----~~~~~~~~~~~-~~--~~~~~~~~~~~~-~~~~~~~~~~~~s~~~l~~~~~~~~~~~~ 234 (482)
. ..+|+++. ++..+++.... .. ....+..+.... .....++++++|||++||..+.+++...
T Consensus 153 -------~--~~~pglp~~~v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~vlvNTf~eLE~~~~~~~~~~- 222 (453)
T PLN02764 153 -------G--VPPPGYPSSKVLLRKQDAYTMKNLEPTNTIDVGPNLLERVTTSLMNSDVIAIRTAREIEGNFCDYIEKH- 222 (453)
T ss_pred -------C--CCCCCCCCCcccCcHhhCcchhhcCCCccchhHHHHHHHHHHhhccCCEEEEeccHHhhHHHHHHHHhh-
Confidence 0 11255431 33344443211 01 001122333333 4567788999999999999999888752
Q ss_pred CCCCCCeEeeccCcCCCCCCccccccccccccCCCCCcEEEEeccCCCCCCHHHHHHHHHHHHhcCCceEEEEeCCCCCC
Q 045267 235 EPGKPPVYPVGPLVKTGSTAESKNEGCLKWLDDQPLGSVLFVSFGSGGTLSCEQLNELALGLEMSEQRFLWVVRSPNNAA 314 (482)
Q Consensus 235 ~p~~p~~~~vGp~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~ 314 (482)
..++++.|||++.........+++|.+|||.++++++|||||||+...+.+++.++..+|+..+.+|+|++..+...
T Consensus 223 --~~~~v~~VGPL~~~~~~~~~~~~~cl~WLD~q~~~sVvyvsfGS~~~~~~~q~~ela~gL~~s~~pflwv~r~~~~~- 299 (453)
T PLN02764 223 --CRKKVLLTGPVFPEPDKTRELEERWVKWLSGYEPDSVVFCALGSQVILEKDQFQELCLGMELTGSPFLVAVKPPRGS- 299 (453)
T ss_pred --cCCcEEEeccCccCccccccchhHHHHHHhCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCeEEEEeCCCCC-
Confidence 12479999999754321112346799999999999999999999999999999999999999999999999853221
Q ss_pred CCcccccCCCCCCCCCCchhHHhhhcCCCeeeccccchhhhhhcccccccccccCchhHHHHhhcCCcEeeccccccchh
Q 045267 315 NSTFFSVNSHKDPYDFLPKGFLDRTKGRGMLVPSWAPQAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAWPLYAEQKM 394 (482)
Q Consensus 315 ~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~ipq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~ 394 (482)
. +..+.+|++|+++.+++++++.+|+||.+||+|++|++||||||+||+.||+++|||||++|++.||+.
T Consensus 300 --------~--~~~~~lp~~f~~r~~grG~v~~~W~PQ~~vL~h~~v~~FvtH~G~nS~~Eal~~GVP~l~~P~~~DQ~~ 369 (453)
T PLN02764 300 --------S--TIQEALPEGFEERVKGRGVVWGGWVQQPLILSHPSVGCFVSHCGFGSMWESLLSDCQIVLVPQLGDQVL 369 (453)
T ss_pred --------c--chhhhCCcchHhhhccCCcEEeCCCCHHHHhcCcccCeEEecCCchHHHHHHHcCCCEEeCCcccchHH
Confidence 0 113469999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhcceeeeeccCCCCccCHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhh
Q 045267 395 NAVILTEDVKLALRPKANENGIVGRDEIAKVVKALMEGE--QGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKWNN 472 (482)
Q Consensus 395 na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~vl~~~--~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~ 472 (482)
||+++++++|+|+.+..++++.++.++|+++|+++|.++ .|+++|+++++++++++ ++||+.+++++|++++++
T Consensus 370 na~~l~~~~g~gv~~~~~~~~~~~~e~i~~av~~vm~~~~~~g~~~r~~a~~~~~~~~----~~GSS~~~l~~lv~~~~~ 445 (453)
T PLN02764 370 NTRLLSDELKVSVEVAREETGWFSKESLRDAINSVMKRDSEIGNLVKKNHTKWRETLA----SPGLLTGYVDNFIESLQD 445 (453)
T ss_pred HHHHHHHHhceEEEeccccCCccCHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHH
Confidence 999996549999998643223489999999999999874 37789999999999997 689999999999999999
Q ss_pred ccCCC
Q 045267 473 NEGKP 477 (482)
Q Consensus 473 ~~~~~ 477 (482)
..+++
T Consensus 446 ~~~~~ 450 (453)
T PLN02764 446 LVSGT 450 (453)
T ss_pred hcccc
Confidence 87765
No 13
>PLN02562 UDP-glycosyltransferase
Probab=100.00 E-value=5.3e-61 Score=485.73 Aligned_cols=429 Identities=25% Similarity=0.399 Sum_probs=320.5
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCCchhhhhhhhcCCCceeEEEecCCCC-CCCcchhhHHH
Q 045267 10 APHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPPSEAQKSTLESLPSSINSVFLPVSLN-DVAEDARAETV 88 (482)
Q Consensus 10 ~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~ 88 (482)
+.||+++|+|++||++|++.||+.|+.+ |++|||++++.+... ....... ..++++..+|...+ +.+. . ...
T Consensus 6 ~~HVVlvPfPaqGHi~PmL~LAk~Las~-G~~VT~vtt~~~~~~--~~~~~~~-~~~i~~v~lp~g~~~~~~~--~-~~~ 78 (448)
T PLN02562 6 RPKIILVPYPAQGHVTPMLKLASAFLSR-GFEPVVITPEFIHRR--ISATLDP-KLGITFMSISDGQDDDPPR--D-FFS 78 (448)
T ss_pred CcEEEEEcCccccCHHHHHHHHHHHHhC-CCEEEEEeCcchhhh--hhhccCC-CCCEEEEECCCCCCCCccc--c-HHH
Confidence 4599999999999999999999999987 999999998875441 1111111 12588888883222 1111 1 111
Q ss_pred HHHHHH-hhhHHHHHHHHHHhhCCCccEEEeCCCCccHHHHHHHcCCccEEEccchHHHHHHHhhhhhhhccCCCCC-cc
Q 045267 89 ISLTVL-RSLPCLRQELTSLVAKATVAALVVDLFGTDAFDVAQEFNISPYIFYPSTAMCLSLFLHLEKLDQMVPRDC-EY 166 (482)
Q Consensus 89 ~~~~~~-~~~~~l~~~l~~~~~~~~pD~vi~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 166 (482)
+...+. ...+.+.+.++++....++++||+|.+.+|+..+|+++|||++.|+++.+..++.+.+.+........+. ..
T Consensus 79 l~~a~~~~~~~~l~~ll~~l~~~~pv~cvI~D~~~~w~~~vA~~~giP~~~f~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 158 (448)
T PLN02562 79 IENSMENTMPPQLERLLHKLDEDGEVACMVVDLLASWAIGVADRCGVPVAGFWPVMLAAYRLIQAIPELVRTGLISETGC 158 (448)
T ss_pred HHHHHHHhchHHHHHHHHHhcCCCCcEEEEECCccHhHHHHHHHhCCCEEEEechhHHHHHHHHHHHHHhhccccccccc
Confidence 222221 2233344444333111234899999999999999999999999999998887777665543221100000 00
Q ss_pred cCCCCc-ccCCCCCccccCCCCcccccc--cchHHHHHHHHHhhcccccEEEEcCccccchhHHHHhhh-cCCCCCCCeE
Q 045267 167 RDMSEP-VQIPGCIPVHGGYLLDPVQDR--KNEAYRWVLHHAKRYKLAEGIIVNSFTDLEGGALKALQH-QDEPGKPPVY 242 (482)
Q Consensus 167 ~~~~~~-~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~-~~~p~~p~~~ 242 (482)
.....+ ..+|++++++..+++..+... ....+..+.+.......++++++|||.+||..+.+.+.. .++|..|+++
T Consensus 159 ~~~~~~~~~~Pg~~~l~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~~~~~~~~~v~ 238 (448)
T PLN02562 159 PRQLEKICVLPEQPLLSTEDLPWLIGTPKARKARFKFWTRTLERTKSLRWILMNSFKDEEYDDVKNHQASYNNGQNPQIL 238 (448)
T ss_pred cccccccccCCCCCCCChhhCcchhcCCCcchHHHHHHHHHHhccccCCEEEEcChhhhCHHHHHHHHhhhccccCCCEE
Confidence 001112 246887777778888755322 222355555666667778899999999999987776653 2455668999
Q ss_pred eeccCcCCCCC----C--ccccccccccccCCCCCcEEEEeccCCC-CCCHHHHHHHHHHHHhcCCceEEEEeCCCCCCC
Q 045267 243 PVGPLVKTGST----A--ESKNEGCLKWLDDQPLGSVLFVSFGSGG-TLSCEQLNELALGLEMSEQRFLWVVRSPNNAAN 315 (482)
Q Consensus 243 ~vGp~~~~~~~----~--~~~~~~~~~~l~~~~~~~~v~vs~GS~~-~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~ 315 (482)
.|||++..... . .+.+.+|.+||+.++++++|||||||+. ..+.+++.+++.+|+.++.+|||++..+.
T Consensus 239 ~iGpl~~~~~~~~~~~~~~~~~~~c~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~l~~~l~~~g~~fiW~~~~~~---- 314 (448)
T PLN02562 239 QIGPLHNQEATTITKPSFWEEDMSCLGWLQEQKPNSVIYISFGSWVSPIGESNVRTLALALEASGRPFIWVLNPVW---- 314 (448)
T ss_pred EecCcccccccccCCCccccchHHHHHHHhcCCCCceEEEEecccccCCCHHHHHHHHHHHHHCCCCEEEEEcCCc----
Confidence 99999865321 1 1223457799999998899999999985 67899999999999999999999997532
Q ss_pred CcccccCCCCCCCCCCchhHHhhhcCCCeeeccccchhhhhhcccccccccccCchhHHHHhhcCCcEeeccccccchhh
Q 045267 316 STFFSVNSHKDPYDFLPKGFLDRTKGRGMLVPSWAPQAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAWPLYAEQKMN 395 (482)
Q Consensus 316 ~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~ipq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~n 395 (482)
.+.+|++|.++.. .|+++++|+||.+||+|++|++||||||+||++||+++|||||++|+++||+.|
T Consensus 315 ------------~~~l~~~~~~~~~-~~~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~GvP~l~~P~~~DQ~~n 381 (448)
T PLN02562 315 ------------REGLPPGYVERVS-KQGKVVSWAPQLEVLKHQAVGCYLTHCGWNSTMEAIQCQKRLLCYPVAGDQFVN 381 (448)
T ss_pred ------------hhhCCHHHHHHhc-cCEEEEecCCHHHHhCCCccceEEecCcchhHHHHHHcCCCEEeCCcccchHHH
Confidence 1247889888875 466778999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcceeeeeccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHh
Q 045267 396 AVILTEDVKLALRPKANENGIVGRDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKWN 471 (482)
Q Consensus 396 a~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~ 471 (482)
|+++++.+|+|+.+. + ++.++|+++|+++|.|+ +||+||++++++++++ .+||||++++++|+++++
T Consensus 382 a~~~~~~~g~g~~~~--~---~~~~~l~~~v~~~l~~~---~~r~~a~~l~~~~~~~-~~gGSS~~nl~~~v~~~~ 448 (448)
T PLN02562 382 CAYIVDVWKIGVRIS--G---FGQKEVEEGLRKVMEDS---GMGERLMKLRERAMGE-EARLRSMMNFTTLKDELK 448 (448)
T ss_pred HHHHHHHhCceeEeC--C---CCHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHhC
Confidence 999987469998884 4 89999999999999886 9999999999999876 567999999999999874
No 14
>PLN02555 limonoid glucosyltransferase
Probab=100.00 E-value=6.1e-61 Score=485.56 Aligned_cols=443 Identities=27% Similarity=0.457 Sum_probs=329.9
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCCchhh-hhhhhc--CCC---ceeEEEecCCCCCCCcch
Q 045267 10 APHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPPSEAQ-KSTLES--LPS---SINSVFLPVSLNDVAEDA 83 (482)
Q Consensus 10 ~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~-~~~~~~--~~~---~~~~~~l~~~~~~~~~~~ 83 (482)
+.||+++|+|++||++|++.||+.|+.+ |..|||++++.+...... ...... ... .+.|..+| +++|.+.
T Consensus 7 ~~HVv~~PfpaqGHi~Pml~lA~~La~~-G~~vT~v~T~~~~~~~~~a~~~~~~~~~~~~~~~i~~~~~p---dglp~~~ 82 (480)
T PLN02555 7 LVHVMLVSFPGQGHVNPLLRLGKLLASK-GLLVTFVTTESWGKKMRQANKIQDGVLKPVGDGFIRFEFFE---DGWAEDD 82 (480)
T ss_pred CCEEEEECCcccccHHHHHHHHHHHHhC-CCeEEEEeccchhhhhhccccccccccccCCCCeEEEeeCC---CCCCCCc
Confidence 4699999999999999999999999887 999999999865542110 001000 011 13444333 2333322
Q ss_pred h----hHHHHHHHHHhhhHHHHHHHHHHhhCCCc-cEEEeCCCCccHHHHHHHcCCccEEEccchHHHHHHHhhhhhhhc
Q 045267 84 R----AETVISLTVLRSLPCLRQELTSLVAKATV-AALVVDLFGTDAFDVAQEFNISPYIFYPSTAMCLSLFLHLEKLDQ 158 (482)
Q Consensus 84 ~----~~~~~~~~~~~~~~~l~~~l~~~~~~~~p-D~vi~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~ 158 (482)
+ ....+........+.+.+.++++....+| ++||+|.+.+|+..+|+++|||.+.|++++++..+.+.+.+...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pv~ciV~D~~~~wa~~vA~~~gIP~~~F~t~~a~~~~~~~~~~~~~- 161 (480)
T PLN02555 83 PRRQDLDLYLPQLELVGKREIPNLVKRYAEQGRPVSCLINNPFIPWVCDVAEELGIPSAVLWVQSCACFSAYYHYYHGL- 161 (480)
T ss_pred ccccCHHHHHHHHHHhhhHHHHHHHHHHhccCCCceEEEECCcchHHHHHHHHcCCCeEEeecccHHHHHHHHHHhhcC-
Confidence 1 11111111112333444444433222344 99999999999999999999999999999999888877653210
Q ss_pred cCCCCCcccCCCCcccCCCCCccccCCCCccccc--ccchHHHHHHHHHhhcccccEEEEcCccccchhHHHHhhhcCCC
Q 045267 159 MVPRDCEYRDMSEPVQIPGCIPVHGGYLLDPVQD--RKNEAYRWVLHHAKRYKLAEGIIVNSFTDLEGGALKALQHQDEP 236 (482)
Q Consensus 159 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~p 236 (482)
.+.+.. .+...++.+|+++++...+++..+.. .....++.+.+.......++++++|||++||..+..++...
T Consensus 162 -~~~~~~-~~~~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l~~~--- 236 (480)
T PLN02555 162 -VPFPTE-TEPEIDVQLPCMPLLKYDEIPSFLHPSSPYPFLRRAILGQYKNLDKPFCILIDTFQELEKEIIDYMSKL--- 236 (480)
T ss_pred -CCcccc-cCCCceeecCCCCCcCHhhCcccccCCCCchHHHHHHHHHHHhcccCCEEEEEchHHHhHHHHHHHhhC---
Confidence 110000 00012345799877888888876532 22233455556666777889999999999999988888652
Q ss_pred CCCCeEeeccCcCCCC---C---C--ccccccccccccCCCCCcEEEEeccCCCCCCHHHHHHHHHHHHhcCCceEEEEe
Q 045267 237 GKPPVYPVGPLVKTGS---T---A--ESKNEGCLKWLDDQPLGSVLFVSFGSGGTLSCEQLNELALGLEMSEQRFLWVVR 308 (482)
Q Consensus 237 ~~p~~~~vGp~~~~~~---~---~--~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~ 308 (482)
.| ++.|||+..... . . +..+++|.+||+.++++++|||||||+...+.+++.+++.+|+..+.+|||++.
T Consensus 237 -~~-v~~iGPl~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~~~~~q~~ela~~l~~~~~~flW~~~ 314 (480)
T PLN02555 237 -CP-IKPVGPLFKMAKTPNSDVKGDISKPADDCIEWLDSKPPSSVVYISFGTVVYLKQEQIDEIAYGVLNSGVSFLWVMR 314 (480)
T ss_pred -CC-EEEeCcccCccccccccccccccccchhHHHHHhCCCCCceeEEEeccccCCCHHHHHHHHHHHHhcCCeEEEEEe
Confidence 34 999999975321 1 0 123567899999999889999999999999999999999999999999999997
Q ss_pred CCCCCCCCcccccCCCCCCCCCCchhHHhhhcCCCeeeccccchhhhhhcccccccccccCchhHHHHhhcCCcEeeccc
Q 045267 309 SPNNAANSTFFSVNSHKDPYDFLPKGFLDRTKGRGMLVPSWAPQAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAWPL 388 (482)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~ipq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~ 388 (482)
..... +. ...+.+|+++.++.+. |+++++|+||.+||.|++|++||||||+||+.||+++|||||++|+
T Consensus 315 ~~~~~---------~~-~~~~~lp~~~~~~~~~-~g~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Eai~~GVP~l~~P~ 383 (480)
T PLN02555 315 PPHKD---------SG-VEPHVLPEEFLEKAGD-KGKIVQWCPQEKVLAHPSVACFVTHCGWNSTMEALSSGVPVVCFPQ 383 (480)
T ss_pred cCccc---------cc-chhhcCChhhhhhcCC-ceEEEecCCHHHHhCCCccCeEEecCCcchHHHHHHcCCCEEeCCC
Confidence 43110 00 1123588899887754 5567799999999999999999999999999999999999999999
Q ss_pred cccchhhHHHHHhhcceeeeeccC--CCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHH
Q 045267 389 YAEQKMNAVILTEDVKLALRPKAN--ENGIVGRDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQL 466 (482)
Q Consensus 389 ~~DQ~~na~rv~~~~G~G~~l~~~--~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~ 466 (482)
++||+.||+++++.+|+|+++... +++.++.++|+++|+++|.+++|+++|+||++|++++++|+.+|||+++++++|
T Consensus 384 ~~DQ~~Na~~~~~~~gvGv~l~~~~~~~~~v~~~~v~~~v~~vm~~~~g~~~r~ra~~l~~~a~~A~~egGSS~~~l~~~ 463 (480)
T PLN02555 384 WGDQVTDAVYLVDVFKTGVRLCRGEAENKLITREEVAECLLEATVGEKAAELKQNALKWKEEAEAAVAEGGSSDRNFQEF 463 (480)
T ss_pred ccccHHHHHHHHHHhCceEEccCCccccCcCcHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 999999999998846999999531 122489999999999999887788999999999999999999999999999999
Q ss_pred HHHHhhccC
Q 045267 467 ASKWNNNEG 475 (482)
Q Consensus 467 ~~~~~~~~~ 475 (482)
++++++..+
T Consensus 464 v~~i~~~~~ 472 (480)
T PLN02555 464 VDKLVRKSV 472 (480)
T ss_pred HHHHHhccc
Confidence 999988744
No 15
>PLN00414 glycosyltransferase family protein
Probab=100.00 E-value=7.7e-61 Score=482.49 Aligned_cols=426 Identities=23% Similarity=0.405 Sum_probs=324.2
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCCchhhhhhhhcCCCceeEEEec-CCCCCCCcchhhHHH
Q 045267 10 APHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPPSEAQKSTLESLPSSINSVFLP-VSLNDVAEDARAETV 88 (482)
Q Consensus 10 ~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~ 88 (482)
+.||+++|+|++||++|++.||+.|+++ |++|||++++.+... .... ...+.++++..++ +..+++|.+.+....
T Consensus 4 ~~HVvlvPfpaqGHi~PmL~LAk~Las~-G~~VT~vtt~~~~~~--i~~~-~~~~~~i~~~~i~lP~~dGLP~g~e~~~~ 79 (446)
T PLN00414 4 KFHAFMYPWFGFGHMIPYLHLANKLAEK-GHRVTFFLPKKAHKQ--LQPL-NLFPDSIVFEPLTLPPVDGLPFGAETASD 79 (446)
T ss_pred CCEEEEecCcccchHHHHHHHHHHHHhC-CCEEEEEeCCchhhh--hccc-ccCCCceEEEEecCCCcCCCCCccccccc
Confidence 5799999999999999999999999988 999999998865432 1111 1122357887776 444667765433211
Q ss_pred ----HHHHHHhhhHHHHHHHHHHhhCCCccEEEeCCCCccHHHHHHHcCCccEEEccchHHHHHHHhhhhhhhccCCCCC
Q 045267 89 ----ISLTVLRSLPCLRQELTSLVAKATVAALVVDLFGTDAFDVAQEFNISPYIFYPSTAMCLSLFLHLEKLDQMVPRDC 164 (482)
Q Consensus 89 ----~~~~~~~~~~~l~~~l~~~~~~~~pD~vi~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (482)
+...+......+.+.++++++..+||+||+|. .+|+..+|+++|||++.|+++++...+.+.+ +... ..
T Consensus 80 l~~~~~~~~~~a~~~l~~~l~~~L~~~~p~cVV~D~-~~wa~~vA~~lgIP~~~F~~~~a~~~~~~~~-~~~~--~~--- 152 (446)
T PLN00414 80 LPNSTKKPIFDAMDLLRDQIEAKVRALKPDLIFFDF-VHWVPEMAKEFGIKSVNYQIISAACVAMVLA-PRAE--LG--- 152 (446)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECC-chhHHHHHHHhCCCEEEEecHHHHHHHHHhC-cHhh--cC---
Confidence 23334555567777888877777899999996 8899999999999999999999987776654 2110 00
Q ss_pred cccCCCCcccCCCCCc----cccCCC--CcccccccchHHHHHHHHHhhcccccEEEEcCccccchhHHHHhhhcCCCCC
Q 045267 165 EYRDMSEPVQIPGCIP----VHGGYL--LDPVQDRKNEAYRWVLHHAKRYKLAEGIIVNSFTDLEGGALKALQHQDEPGK 238 (482)
Q Consensus 165 ~~~~~~~~~~~p~~~~----~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~p~~ 238 (482)
..+|+++. ++..+. +..+ ... ...+.+.......++++++|||.+||..+.+++... ..
T Consensus 153 --------~~~pg~p~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~~~~~---~~ 217 (446)
T PLN00414 153 --------FPPPDYPLSKVALRGHDANVCSLF-ANS---HELFGLITKGLKNCDVVSIRTCVELEGNLCDFIERQ---CQ 217 (446)
T ss_pred --------CCCCCCCCCcCcCchhhcccchhh-ccc---HHHHHHHHHhhccCCEEEEechHHHHHHHHHHHHHh---cC
Confidence 01244321 111111 1111 111 122333344566788999999999999999888762 22
Q ss_pred CCeEeeccCcCCCCC--CccccccccccccCCCCCcEEEEeccCCCCCCHHHHHHHHHHHHhcCCceEEEEeCCCCCCCC
Q 045267 239 PPVYPVGPLVKTGST--AESKNEGCLKWLDDQPLGSVLFVSFGSGGTLSCEQLNELALGLEMSEQRFLWVVRSPNNAANS 316 (482)
Q Consensus 239 p~~~~vGp~~~~~~~--~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~ 316 (482)
+.++.|||+...... ....+++|.+|||.++++++|||||||+...+.+++.++..+|+..+.+|+|++..+...
T Consensus 218 ~~v~~VGPl~~~~~~~~~~~~~~~~~~WLD~q~~~sVvyvsfGS~~~~~~~q~~e~a~gL~~s~~~Flwvvr~~~~~--- 294 (446)
T PLN00414 218 RKVLLTGPMLPEPQNKSGKPLEDRWNHWLNGFEPGSVVFCAFGTQFFFEKDQFQEFCLGMELTGLPFLIAVMPPKGS--- 294 (446)
T ss_pred CCeEEEcccCCCcccccCcccHHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHHcCCCeEEEEecCCCc---
Confidence 479999999754321 111235688999999999999999999999999999999999999999999999764210
Q ss_pred cccccCCCCCCCCCCchhHHhhhcCCCeeeccccchhhhhhcccccccccccCchhHHHHhhcCCcEeeccccccchhhH
Q 045267 317 TFFSVNSHKDPYDFLPKGFLDRTKGRGMLVPSWAPQAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAWPLYAEQKMNA 396 (482)
Q Consensus 317 ~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~ipq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na 396 (482)
+ +..+.+|++|+++.+++++++.+|+||.+||+|++|++||||||+||++||+++|||||++|++.||+.||
T Consensus 295 -----~---~~~~~lp~~f~~r~~~~g~vv~~w~PQ~~vL~h~~v~~fvtH~G~nS~~Ea~~~GvP~l~~P~~~dQ~~na 366 (446)
T PLN00414 295 -----S---TVQEALPEGFEERVKGRGIVWEGWVEQPLILSHPSVGCFVNHCGFGSMWESLVSDCQIVFIPQLADQVLIT 366 (446)
T ss_pred -----c---cchhhCChhHHHHhcCCCeEEeccCCHHHHhcCCccceEEecCchhHHHHHHHcCCCEEecCcccchHHHH
Confidence 0 12246899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcceeeeeccCCCCccCHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcc
Q 045267 397 VILTEDVKLALRPKANENGIVGRDEIAKVVKALMEGE--QGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKWNNNE 474 (482)
Q Consensus 397 ~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~vl~~~--~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~~~ 474 (482)
+++++++|+|+.+...+++.+++++|+++++++|.++ .++++|++++++++.+.+ +||++ ..+++|++++++..
T Consensus 367 ~~~~~~~g~g~~~~~~~~~~~~~~~i~~~v~~~m~~~~e~g~~~r~~a~~~~~~~~~---~gg~s-s~l~~~v~~~~~~~ 442 (446)
T PLN00414 367 RLLTEELEVSVKVQREDSGWFSKESLRDTVKSVMDKDSEIGNLVKRNHKKLKETLVS---PGLLS-GYADKFVEALENEV 442 (446)
T ss_pred HHHHHHhCeEEEeccccCCccCHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHc---CCCcH-HHHHHHHHHHHHhc
Confidence 9996449999999754334599999999999999874 267899999999999864 66634 45999999998765
Q ss_pred CC
Q 045267 475 GK 476 (482)
Q Consensus 475 ~~ 476 (482)
+.
T Consensus 443 ~~ 444 (446)
T PLN00414 443 NN 444 (446)
T ss_pred cc
Confidence 53
No 16
>PLN02554 UDP-glycosyltransferase family protein
Probab=100.00 E-value=1.2e-60 Score=488.38 Aligned_cols=450 Identities=36% Similarity=0.604 Sum_probs=334.3
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHhcCC--CEEEEEcCCCCCCc-hhhhhhhhcC----CCceeEEEecCCCCCCCcc
Q 045267 10 APHIVLLPSPGMGHLIPLIEFAKRLVHRHH--FLVTFFIPSDGPPS-EAQKSTLESL----PSSINSVFLPVSLNDVAED 82 (482)
Q Consensus 10 ~~~ili~~~~~~GH~~P~l~La~~L~~r~G--H~Vt~~~~~~~~~~-~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~ 82 (482)
|+||+++|++++||++|++.||+.|+.+ | ..|||++++.+... .......... ..++++..+|..... +..
T Consensus 2 ~~hvvl~P~paqGHi~P~l~LAk~La~~-G~~~~vT~v~t~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lp~~~~~-~~~ 79 (481)
T PLN02554 2 KIELVFIPSPGIGHLRPTVELAKLLVDS-DDRLSITVIIIPSRSGDDASSSAYIASLSASSEDRLRYEVISAGDQP-TTE 79 (481)
T ss_pred ceEEEEeCCcchhhHHHHHHHHHHHHhC-CCCEEEEEEeCCCccchhhhhhhhhhhcccCCCCCeEEEEcCCCCCC-ccc
Confidence 5699999999999999999999999887 8 88999998876431 0001111111 225899998822211 111
Q ss_pred hhhHHHHHHHHHhhhHHHHHHHHHHhhC-----CCc-cEEEeCCCCccHHHHHHHcCCccEEEccchHHHHHHHhhhhhh
Q 045267 83 ARAETVISLTVLRSLPCLRQELTSLVAK-----ATV-AALVVDLFGTDAFDVAQEFNISPYIFYPSTAMCLSLFLHLEKL 156 (482)
Q Consensus 83 ~~~~~~~~~~~~~~~~~l~~~l~~~~~~-----~~p-D~vi~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~ 156 (482)
. . .+...+....+.+.+.+++++++ .+| ++||+|.+.+|+..+|+++|||++.|+++++..++.+.+.+..
T Consensus 80 ~--~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~pv~cvV~D~f~~wa~dvA~~lgIP~~~F~t~sa~~~~~~~~~~~~ 156 (481)
T PLN02554 80 D--P-TFQSYIDNQKPKVRDAVAKLVDDSSTPSSPRLAGFVVDMFCTSMIDVANEFGVPSYMFYTSNATFLGLQLHVQML 156 (481)
T ss_pred c--h-HHHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEECCcchhHHHHHHHhCCCEEEEeCCcHHHHHHHHhhhhh
Confidence 1 1 23333334455556666665432 134 8999999999999999999999999999999998888776553
Q ss_pred hccCCCC-CcccCCCCcccCCCCC-ccccCCCCcccccccchHHHHHHHHHhhcccccEEEEcCccccchhHHHHhhhcC
Q 045267 157 DQMVPRD-CEYRDMSEPVQIPGCI-PVHGGYLLDPVQDRKNEAYRWVLHHAKRYKLAEGIIVNSFTDLEGGALKALQHQD 234 (482)
Q Consensus 157 ~~~~~~~-~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~ 234 (482)
......+ .+..+...++.+|++. |++..+++..+..+ ..+..+.+.......++++++||+.+||..+..++.+.+
T Consensus 157 ~~~~~~~~~~~~~~~~~v~iPgl~~pl~~~dlp~~~~~~--~~~~~~~~~~~~~~~~~gvlvNt~~eLe~~~~~~l~~~~ 234 (481)
T PLN02554 157 YDEKKYDVSELEDSEVELDVPSLTRPYPVKCLPSVLLSK--EWLPLFLAQARRFREMKGILVNTVAELEPQALKFFSGSS 234 (481)
T ss_pred ccccccCccccCCCCceeECCCCCCCCCHHHCCCcccCH--HHHHHHHHHHHhcccCCEEEEechHHHhHHHHHHHHhcc
Confidence 2210000 0111111234578873 77777887655432 234455556667788899999999999999999988742
Q ss_pred CCCCCCeEeeccCcC-CCCC---CccccccccccccCCCCCcEEEEeccCCCCCCHHHHHHHHHHHHhcCCceEEEEeCC
Q 045267 235 EPGKPPVYPVGPLVK-TGST---AESKNEGCLKWLDDQPLGSVLFVSFGSGGTLSCEQLNELALGLEMSEQRFLWVVRSP 310 (482)
Q Consensus 235 ~p~~p~~~~vGp~~~-~~~~---~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~ 310 (482)
+..|+++.|||++. .... ....+++|.+|++.++++++|||||||+...+.+++.+++.+|+.++++|||+++..
T Consensus 235 -~~~~~v~~vGpl~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~la~~l~~~~~~flW~~~~~ 313 (481)
T PLN02554 235 -GDLPPVYPVGPVLHLENSGDDSKDEKQSEILRWLDEQPPKSVVFLCFGSMGGFSEEQAREIAIALERSGHRFLWSLRRA 313 (481)
T ss_pred -cCCCCEEEeCCCccccccccccccccchHHHHHHhcCCCCcEEEEeccccccCCHHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 13468999999943 2211 123456899999999888999999999999999999999999999999999999753
Q ss_pred CCCCCCccccc-CCCCCCCCCCchhHHhhhcCCCeeeccccchhhhhhcccccccccccCchhHHHHhhcCCcEeecccc
Q 045267 311 NNAANSTFFSV-NSHKDPYDFLPKGFLDRTKGRGMLVPSWAPQAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAWPLY 389 (482)
Q Consensus 311 ~~~~~~~~~~~-~~~~~~~~~lp~~~~~~~~~~~v~~~~~ipq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~ 389 (482)
... ....+ ++..+..+.+|++|.++.++.. ++++|+||.+||+|++|++||||||+||+.||+++|||||++|++
T Consensus 314 ~~~---~~~~~~~~~~~~~~~lp~~~~~r~~~~g-~v~~W~PQ~~iL~H~~v~~FvtH~G~nS~~Ea~~~GVP~l~~P~~ 389 (481)
T PLN02554 314 SPN---IMKEPPGEFTNLEEILPEGFLDRTKDIG-KVIGWAPQVAVLAKPAIGGFVTHCGWNSILESLWFGVPMAAWPLY 389 (481)
T ss_pred ccc---ccccccccccchhhhCChHHHHHhccCc-eEEeeCCHHHHhCCcccCcccccCccchHHHHHHcCCCEEecCcc
Confidence 110 00000 0000111236999998886554 566999999999999999999999999999999999999999999
Q ss_pred ccchhhHH-HHHhhcceeeeeccC--------CCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchH
Q 045267 390 AEQKMNAV-ILTEDVKLALRPKAN--------ENGIVGRDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSST 460 (482)
Q Consensus 390 ~DQ~~na~-rv~~~~G~G~~l~~~--------~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~ 460 (482)
+||+.||+ ++++ +|+|+.++.. +++.++.++|+++|+++|.++ ++||+||+++++.+++|+.+|||+.
T Consensus 390 ~DQ~~Na~~~v~~-~g~Gv~l~~~~~~~~~~~~~~~~~~e~l~~av~~vm~~~--~~~r~~a~~l~~~~~~av~~gGss~ 466 (481)
T PLN02554 390 AEQKFNAFEMVEE-LGLAVEIRKYWRGDLLAGEMETVTAEEIERGIRCLMEQD--SDVRKRVKEMSEKCHVALMDGGSSH 466 (481)
T ss_pred ccchhhHHHHHHH-hCceEEeeccccccccccccCeEcHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHhcCCChHH
Confidence 99999995 5777 9999998641 112489999999999999732 3899999999999999999999999
Q ss_pred HHHHHHHHHHhhcc
Q 045267 461 KALSQLASKWNNNE 474 (482)
Q Consensus 461 ~~~~~~~~~~~~~~ 474 (482)
+++++|+++++.+.
T Consensus 467 ~~l~~lv~~~~~~~ 480 (481)
T PLN02554 467 TALKKFIQDVTKNI 480 (481)
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999998874
No 17
>PLN02534 UDP-glycosyltransferase
Probab=100.00 E-value=1.3e-60 Score=483.87 Aligned_cols=442 Identities=30% Similarity=0.496 Sum_probs=329.9
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCCchhhhhhhhc---CCCceeEEEec-CCC-CCCCcchh
Q 045267 10 APHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPPSEAQKSTLES---LPSSINSVFLP-VSL-NDVAEDAR 84 (482)
Q Consensus 10 ~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~-~~~-~~~~~~~~ 84 (482)
+.||+++|++++||++|++.||+.|+.+ |+.|||++++.+... ....... ....++|..+| +.. +++|.+.+
T Consensus 8 ~~Hvv~vPfpaqGHi~P~l~LAk~La~~-G~~vT~v~t~~n~~~--~~~~~~~~~~~~~~i~~~~lp~p~~~dglp~~~~ 84 (491)
T PLN02534 8 QLHFVLIPLMAQGHMIPMIDMARLLAER-GVIVSLVTTPQNASR--FAKTIDRARESGLPIRLVQIPFPCKEVGLPIGCE 84 (491)
T ss_pred CCEEEEECCCCcchHHHHHHHHHHHHhC-CCeEEEEECCCcHHH--HhhhhhhccccCCCeEEEEcCCCCccCCCCCCcc
Confidence 5799999999999999999999999887 999999999876542 1111110 01138898888 332 46665533
Q ss_pred hHH-----HHHHHHHhhhHHHHHHHHHHhhC--CCccEEEeCCCCccHHHHHHHcCCccEEEccchHHHHHHHhhhhhhh
Q 045267 85 AET-----VISLTVLRSLPCLRQELTSLVAK--ATVAALVVDLFGTDAFDVAQEFNISPYIFYPSTAMCLSLFLHLEKLD 157 (482)
Q Consensus 85 ~~~-----~~~~~~~~~~~~l~~~l~~~~~~--~~pD~vi~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~ 157 (482)
... .+...+......+...+++++++ .+|++||+|.+.+|+..+|+++|||++.|++++++....+.......
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~l~~~l~~lL~~~~~pp~cIV~D~f~~Wa~dVA~~lgIP~v~F~t~~a~~~~~~~~~~~~~ 164 (491)
T PLN02534 85 NLDTLPSRDLLRKFYDAVDKLQQPLERFLEQAKPPPSCIISDKCLSWTSKTAQRFNIPRIVFHGMCCFSLLSSHNIRLHN 164 (491)
T ss_pred ccccCCcHHHHHHHHHHHHHhHHHHHHHHHhcCCCCcEEEECCccHHHHHHHHHhCCCeEEEecchHHHHHHHHHHHHhc
Confidence 211 22223333444566666666654 46899999999999999999999999999998887765543221100
Q ss_pred ccCCCCCcccCCCCcccCCCCCc---cccCCCCcccccccchHHHHHHHHHhh-cccccEEEEcCccccchhHHHHhhhc
Q 045267 158 QMVPRDCEYRDMSEPVQIPGCIP---VHGGYLLDPVQDRKNEAYRWVLHHAKR-YKLAEGIIVNSFTDLEGGALKALQHQ 233 (482)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~l~~~~~~~~~~~ 233 (482)
.... ...-..++.+|++++ +...+++..+... ..+..+...+.. .+.++++++|||++||+.+.+++...
T Consensus 165 ~~~~----~~~~~~~~~iPg~p~~~~l~~~dlp~~~~~~--~~~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~l~~l~~~ 238 (491)
T PLN02534 165 AHLS----VSSDSEPFVVPGMPQSIEITRAQLPGAFVSL--PDLDDVRNKMREAESTAFGVVVNSFNELEHGCAEAYEKA 238 (491)
T ss_pred cccc----CCCCCceeecCCCCccccccHHHCChhhcCc--ccHHHHHHHHHhhcccCCEEEEecHHHhhHHHHHHHHhh
Confidence 0000 000112344677653 5556666543221 112333333332 34567899999999999999888753
Q ss_pred CCCCCCCeEeeccCcCCCCC-------C--cc-ccccccccccCCCCCcEEEEeccCCCCCCHHHHHHHHHHHHhcCCce
Q 045267 234 DEPGKPPVYPVGPLVKTGST-------A--ES-KNEGCLKWLDDQPLGSVLFVSFGSGGTLSCEQLNELALGLEMSEQRF 303 (482)
Q Consensus 234 ~~p~~p~~~~vGp~~~~~~~-------~--~~-~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~ 303 (482)
..++++.|||++..... . .. .+++|.+||+.++++++|||||||+....++++.++..+|+.++.+|
T Consensus 239 ---~~~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~cl~wLd~~~~~sVvyvsfGS~~~~~~~q~~e~a~gl~~~~~~f 315 (491)
T PLN02534 239 ---IKKKVWCVGPVSLCNKRNLDKFERGNKASIDETQCLEWLDSMKPRSVIYACLGSLCRLVPSQLIELGLGLEASKKPF 315 (491)
T ss_pred ---cCCcEEEECcccccccccccccccCCccccchHHHHHHHhcCCCCceEEEEecccccCCHHHHHHHHHHHHhCCCCE
Confidence 22479999999753210 0 01 13468899999999999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCCcccccCCCCCCCCCCchhHHhhhcCCCeeeccccchhhhhhcccccccccccCchhHHHHhhcCCcE
Q 045267 304 LWVVRSPNNAANSTFFSVNSHKDPYDFLPKGFLDRTKGRGMLVPSWAPQAQVLSHGSTGGFLCHCGWNSVLESVVNGVPL 383 (482)
Q Consensus 304 i~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~ipq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~ 383 (482)
+|++..+... .+ .....+|++|.++..+.|+++.+|+||.+||+|+++++||||||+||++||+++||||
T Consensus 316 lW~~r~~~~~--------~~--~~~~~~p~gf~~~~~~~g~~v~~w~pq~~iL~h~~v~~fvtH~G~ns~~ea~~~GvP~ 385 (491)
T PLN02534 316 IWVIKTGEKH--------SE--LEEWLVKENFEERIKGRGLLIKGWAPQVLILSHPAIGGFLTHCGWNSTIEGICSGVPM 385 (491)
T ss_pred EEEEecCccc--------cc--hhhhcCchhhHHhhccCCeeccCCCCHHHHhcCCccceEEecCccHHHHHHHHcCCCE
Confidence 9999843210 00 0011368999999888999999999999999999999999999999999999999999
Q ss_pred eeccccccchhhHHHHHhhcceeeeecc-------CCC--C-ccCHHHHHHHHHHHhc--CCchHHHHHHHHHHHHHHHH
Q 045267 384 IAWPLYAEQKMNAVILTEDVKLALRPKA-------NEN--G-IVGRDEIAKVVKALME--GEQGKEVRNKMKDLKDAAAA 451 (482)
Q Consensus 384 v~~P~~~DQ~~na~rv~~~~G~G~~l~~-------~~~--~-~~~~~~l~~ai~~vl~--~~~~~~~r~~a~~l~~~~~~ 451 (482)
|++|++.||+.||+++++++|+|+++.. +++ | .++.++|+++|+++|. +++|+++|+||++|++.+++
T Consensus 386 v~~P~~~dq~~na~~~~e~~~vGv~~~~~~~~~~~~~~~~~~~v~~eev~~~v~~~m~~~~eeg~~~R~rA~elk~~a~~ 465 (491)
T PLN02534 386 ITWPLFAEQFLNEKLIVEVLRIGVRVGVEVPVRWGDEERVGVLVKKDEVEKAVKTLMDDGGEEGERRRRRAQELGVMARK 465 (491)
T ss_pred EeccccccHHHHHHHHHHhhcceEEecccccccccccccccCccCHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999876999998742 111 2 4899999999999997 34578999999999999999
Q ss_pred HhhcCCchHHHHHHHHHHHhhc
Q 045267 452 VLSENGSSTKALSQLASKWNNN 473 (482)
Q Consensus 452 a~~~~g~~~~~~~~~~~~~~~~ 473 (482)
|+.+|||+.+++++|++.++..
T Consensus 466 Av~~GGSS~~nl~~fv~~i~~~ 487 (491)
T PLN02534 466 AMELGGSSHINLSILIQDVLKQ 487 (491)
T ss_pred HhcCCCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999753
No 18
>PLN03007 UDP-glucosyltransferase family protein
Probab=100.00 E-value=2.6e-60 Score=486.65 Aligned_cols=443 Identities=29% Similarity=0.492 Sum_probs=322.4
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCCchh-hhhhhhcCCC--ceeEEEec-CCC-CCCCcchh
Q 045267 10 APHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPPSEA-QKSTLESLPS--SINSVFLP-VSL-NDVAEDAR 84 (482)
Q Consensus 10 ~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~l~-~~~-~~~~~~~~ 84 (482)
+.||+++|+|+.||++|++.||+.|+.| ||+|||++++.+..... ....+..... .+++..++ ... +++|.+.+
T Consensus 5 ~~hVvlvp~pa~GHi~P~L~LAk~L~~r-G~~VT~vtt~~~~~~i~~~~a~~~~~~~~~~~~~~~~~~p~~~~glP~g~e 83 (482)
T PLN03007 5 KLHILFFPFMAHGHMIPTLDMAKLFSSR-GAKSTILTTPLNAKIFEKPIEAFKNLNPGLEIDIQIFNFPCVELGLPEGCE 83 (482)
T ss_pred CcEEEEECCCccccHHHHHHHHHHHHhC-CCEEEEEECCCchhhhhhhhhhhcccCCCCcceEEEeeCCCCcCCCCCCcc
Confidence 4699999999999999999999999988 99999999997664211 1111101111 13444444 211 24454322
Q ss_pred hH-----------HHHHHHHHhhhHHHHHHHHHHhhCCCccEEEeCCCCccHHHHHHHcCCccEEEccchHHHHHHHhhh
Q 045267 85 AE-----------TVISLTVLRSLPCLRQELTSLVAKATVAALVVDLFGTDAFDVAQEFNISPYIFYPSTAMCLSLFLHL 153 (482)
Q Consensus 85 ~~-----------~~~~~~~~~~~~~l~~~l~~~~~~~~pD~vi~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~ 153 (482)
.. ..+...+....+.+.+.++++++..+||+||+|.+.+|+..+|+++|||++.|++++++..+.+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~IV~D~~~~w~~~vA~~lgIP~v~f~~~~a~~~~~~~~~ 163 (482)
T PLN03007 84 NVDFITSNNNDDSGDLFLKFLFSTKYFKDQLEKLLETTRPDCLVADMFFPWATEAAEKFGVPRLVFHGTGYFSLCASYCI 163 (482)
T ss_pred cccccccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEECCcchhHHHHHHHhCCCeEEeecccHHHHHHHHHH
Confidence 11 1222223345567778888887777899999999999999999999999999999887766554432
Q ss_pred hhhhccCCCCCcccCCCCcccCCCCCc---cccCCCCcccccccchHHHHHHHHHhhcccccEEEEcCccccchhHHHHh
Q 045267 154 EKLDQMVPRDCEYRDMSEPVQIPGCIP---VHGGYLLDPVQDRKNEAYRWVLHHAKRYKLAEGIIVNSFTDLEGGALKAL 230 (482)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~ 230 (482)
..... .. ........+.+|++++ +...+++.. +........+.........++++++|++.+||..+.+++
T Consensus 164 ~~~~~-~~---~~~~~~~~~~~pg~p~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vl~Nt~~~le~~~~~~~ 237 (482)
T PLN03007 164 RVHKP-QK---KVASSSEPFVIPDLPGDIVITEEQINDA--DEESPMGKFMKEVRESEVKSFGVLVNSFYELESAYADFY 237 (482)
T ss_pred Hhccc-cc---ccCCCCceeeCCCCCCccccCHHhcCCC--CCchhHHHHHHHHHhhcccCCEEEEECHHHHHHHHHHHH
Confidence 11110 00 0000001222455532 222333321 111111122222234566778999999999999988887
Q ss_pred hhcCCCCCCCeEeeccCcCCCCC-------C---ccccccccccccCCCCCcEEEEeccCCCCCCHHHHHHHHHHHHhcC
Q 045267 231 QHQDEPGKPPVYPVGPLVKTGST-------A---ESKNEGCLKWLDDQPLGSVLFVSFGSGGTLSCEQLNELALGLEMSE 300 (482)
Q Consensus 231 ~~~~~p~~p~~~~vGp~~~~~~~-------~---~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~ 300 (482)
.+. ..+.+++|||+...... . ...+.+|.+|++.++++++|||||||+...+.+++.++..+|+.++
T Consensus 238 ~~~---~~~~~~~VGPl~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~svvyvsfGS~~~~~~~~~~~~~~~l~~~~ 314 (482)
T PLN03007 238 KSF---VAKRAWHIGPLSLYNRGFEEKAERGKKANIDEQECLKWLDSKKPDSVIYLSFGSVASFKNEQLFEIAAGLEGSG 314 (482)
T ss_pred Hhc---cCCCEEEEccccccccccccccccCCccccchhHHHHHHhcCCCCceEEEeecCCcCCCHHHHHHHHHHHHHCC
Confidence 653 12369999997643211 0 1124678999999988999999999999888999999999999999
Q ss_pred CceEEEEeCCCCCCCCcccccCCCCCCCCCCchhHHhhhcCCCeeeccccchhhhhhcccccccccccCchhHHHHhhcC
Q 045267 301 QRFLWVVRSPNNAANSTFFSVNSHKDPYDFLPKGFLDRTKGRGMLVPSWAPQAQVLSHGSTGGFLCHCGWNSVLESVVNG 380 (482)
Q Consensus 301 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~ipq~~lL~~~~~~~~I~HGG~gs~~eal~~G 380 (482)
.+|||+++.+... + +..+.+|++|.++..+.|+++.+|+||.+||+|++|++||||||+||++||+++|
T Consensus 315 ~~flw~~~~~~~~----------~-~~~~~lp~~~~~r~~~~g~~v~~w~PQ~~iL~h~~v~~fvtH~G~nS~~Eal~~G 383 (482)
T PLN03007 315 QNFIWVVRKNENQ----------G-EKEEWLPEGFEERTKGKGLIIRGWAPQVLILDHQATGGFVTHCGWNSLLEGVAAG 383 (482)
T ss_pred CCEEEEEecCCcc----------c-chhhcCCHHHHHHhccCCEEEecCCCHHHHhccCccceeeecCcchHHHHHHHcC
Confidence 9999999864210 0 1123589999999999999999999999999999999999999999999999999
Q ss_pred CcEeeccccccchhhHHHHHhhcceeeeeccC-----CCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhc
Q 045267 381 VPLIAWPLYAEQKMNAVILTEDVKLALRPKAN-----ENGIVGRDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSE 455 (482)
Q Consensus 381 vP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~-----~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~ 455 (482)
||||++|+++||+.||+++++.+++|+.+... +.+.+++++|+++|+++|.+++|++||+||+++++.+++|+.+
T Consensus 384 VP~v~~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~~~~~~r~~a~~~~~~a~~a~~~ 463 (482)
T PLN03007 384 LPMVTWPVGAEQFYNEKLVTQVLRTGVSVGAKKLVKVKGDFISREKVEKAVREVIVGEEAEERRLRAKKLAEMAKAAVEE 463 (482)
T ss_pred CCeeeccchhhhhhhHHHHHHhhcceeEeccccccccccCcccHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999887434555544211 1123899999999999999887889999999999999999999
Q ss_pred CCchHHHHHHHHHHHhhc
Q 045267 456 NGSSTKALSQLASKWNNN 473 (482)
Q Consensus 456 ~g~~~~~~~~~~~~~~~~ 473 (482)
|||+++++++|+++++++
T Consensus 464 gGsS~~~l~~~v~~~~~~ 481 (482)
T PLN03007 464 GGSSFNDLNKFMEELNSR 481 (482)
T ss_pred CCcHHHHHHHHHHHHHhc
Confidence 999999999999998864
No 19
>PLN02152 indole-3-acetate beta-glucosyltransferase
Probab=100.00 E-value=6.7e-60 Score=474.90 Aligned_cols=432 Identities=26% Similarity=0.400 Sum_probs=319.4
Q ss_pred ccCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCCchhhhhhhhcC--CCceeEEEecCCCCCCCcchh-
Q 045267 8 QAAPHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPPSEAQKSTLESL--PSSINSVFLPVSLNDVAEDAR- 84 (482)
Q Consensus 8 ~~~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~- 84 (482)
|++.||+++|+++.||++|++.||+.|+.++|+.|||++++.+.. +...... ..++++..++ ++++.+..
T Consensus 1 ~~~~hvv~~P~p~qGHi~P~l~La~~La~~~G~~vT~v~t~~~~~----~~~~~~~~~~~~i~~~~i~---dglp~g~~~ 73 (455)
T PLN02152 1 MAPPHFLLVTFPAQGHVNPSLRFARRLIKTTGTRVTFATCLSVIH----RSMIPNHNNVENLSFLTFS---DGFDDGVIS 73 (455)
T ss_pred CCCcEEEEecCcccccHHHHHHHHHHHhhCCCcEEEEEeccchhh----hhhhccCCCCCCEEEEEcC---CCCCCcccc
Confidence 456799999999999999999999999853499999999885422 1111111 1258888776 33443321
Q ss_pred ----hHHHHHHHHHhhhHHHHHHHHHHhhC-CCccEEEeCCCCccHHHHHHHcCCccEEEccchHHHHHHHhhhhhhhcc
Q 045267 85 ----AETVISLTVLRSLPCLRQELTSLVAK-ATVAALVVDLFGTDAFDVAQEFNISPYIFYPSTAMCLSLFLHLEKLDQM 159 (482)
Q Consensus 85 ----~~~~~~~~~~~~~~~l~~~l~~~~~~-~~pD~vi~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~ 159 (482)
....+........+.+.+.++++... .++++||+|.+.+|+..+|+++|||++.|++++++..+.+++.....
T Consensus 74 ~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~pv~ciV~D~~~~wa~dvA~~lgIP~~~f~t~~a~~~~~~~~~~~~~-- 151 (455)
T PLN02152 74 NTDDVQNRLVNFERNGDKALSDFIEANLNGDSPVTCLIYTILPNWAPKVARRFHLPSVLLWIQPAFVFDIYYNYSTGN-- 151 (455)
T ss_pred ccccHHHHHHHHHHhccHHHHHHHHHhhccCCCceEEEECCccHhHHHHHHHhCCCEEEEECccHHHHHHHHHhhccC--
Confidence 11222333333445555555554322 23599999999999999999999999999999998887776543210
Q ss_pred CCCCCcccCCCCcccCCCCCccccCCCCcccccc--cchHHHHHHHHHhhcc--cccEEEEcCccccchhHHHHhhhcCC
Q 045267 160 VPRDCEYRDMSEPVQIPGCIPVHGGYLLDPVQDR--KNEAYRWVLHHAKRYK--LAEGIIVNSFTDLEGGALKALQHQDE 235 (482)
Q Consensus 160 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~--~~~~~~~~s~~~l~~~~~~~~~~~~~ 235 (482)
...+.+|+++++...+++..+... ....+..+.+...... .++++++|||++||..+..++..
T Consensus 152 ----------~~~~~iPglp~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~--- 218 (455)
T PLN02152 152 ----------NSVFEFPNLPSLEIRDLPSFLSPSNTNKAAQAVYQELMEFLKEESNPKILVNTFDSLEPEFLTAIPN--- 218 (455)
T ss_pred ----------CCeeecCCCCCCchHHCchhhcCCCCchhHHHHHHHHHHHhhhccCCEEEEeChHHhhHHHHHhhhc---
Confidence 013347887777777887765321 1112233333333332 24689999999999999888854
Q ss_pred CCCCCeEeeccCcCCC----CC--C----ccccccccccccCCCCCcEEEEeccCCCCCCHHHHHHHHHHHHhcCCceEE
Q 045267 236 PGKPPVYPVGPLVKTG----ST--A----ESKNEGCLKWLDDQPLGSVLFVSFGSGGTLSCEQLNELALGLEMSEQRFLW 305 (482)
Q Consensus 236 p~~p~~~~vGp~~~~~----~~--~----~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~ 305 (482)
..++.|||++... .. . ...+.++.+||+.++++++|||||||+...+.+++.++..+|+.++.+|||
T Consensus 219 ---~~v~~VGPL~~~~~~~~~~~~~~~~~~~~~~~~~~wLd~~~~~sVvyvsfGS~~~l~~~q~~ela~gL~~s~~~flW 295 (455)
T PLN02152 219 ---IEMVAVGPLLPAEIFTGSESGKDLSVRDQSSSYTLWLDSKTESSVIYVSFGTMVELSKKQIEELARALIEGKRPFLW 295 (455)
T ss_pred ---CCEEEEcccCccccccccccCccccccccchHHHHHhhCCCCCceEEEEecccccCCHHHHHHHHHHHHHcCCCeEE
Confidence 1599999997532 10 0 012347999999999899999999999999999999999999999999999
Q ss_pred EEeCCCCCCCCcccccCCCCCCCCCCchhHHhhhcCCCeeeccccchhhhhhcccccccccccCchhHHHHhhcCCcEee
Q 045267 306 VVRSPNNAANSTFFSVNSHKDPYDFLPKGFLDRTKGRGMLVPSWAPQAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIA 385 (482)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~ipq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~ 385 (482)
++..+.....+ ..+.+ .....+|++|.++.+..+ ++.+|+||.+||+|++|++||||||+||+.||+++|||||+
T Consensus 296 v~r~~~~~~~~--~~~~~--~~~~~~~~~f~e~~~~~g-~v~~W~PQ~~iL~h~~vg~fvtH~G~nS~~Ea~~~GvP~l~ 370 (455)
T PLN02152 296 VITDKLNREAK--IEGEE--ETEIEKIAGFRHELEEVG-MIVSWCSQIEVLRHRAVGCFVTHCGWSSSLESLVLGVPVVA 370 (455)
T ss_pred EEecCcccccc--ccccc--ccccccchhHHHhccCCe-EEEeeCCHHHHhCCcccceEEeeCCcccHHHHHHcCCCEEe
Confidence 99753210000 00000 001135788988876554 56699999999999999999999999999999999999999
Q ss_pred ccccccchhhHHHHHhhcceeeeeccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHH
Q 045267 386 WPLYAEQKMNAVILTEDVKLALRPKANENGIVGRDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQ 465 (482)
Q Consensus 386 ~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~ 465 (482)
+|+++||+.||+++++.+|+|+.+..++++.++.++|+++|+++|.|+ +.+||+||++++++++++..+|||+++++++
T Consensus 371 ~P~~~DQ~~na~~~~~~~~~G~~~~~~~~~~~~~e~l~~av~~vm~~~-~~~~r~~a~~~~~~~~~a~~~ggsS~~nl~~ 449 (455)
T PLN02152 371 FPMWSDQPANAKLLEEIWKTGVRVRENSEGLVERGEIRRCLEAVMEEK-SVELRESAEKWKRLAIEAGGEGGSSDKNVEA 449 (455)
T ss_pred ccccccchHHHHHHHHHhCceEEeecCcCCcCcHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 999999999999999856777777543333479999999999999754 4579999999999999999999999999999
Q ss_pred HHHHH
Q 045267 466 LASKW 470 (482)
Q Consensus 466 ~~~~~ 470 (482)
|++++
T Consensus 450 li~~i 454 (455)
T PLN02152 450 FVKTL 454 (455)
T ss_pred HHHHh
Confidence 99976
No 20
>PLN02448 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.1e-59 Score=477.66 Aligned_cols=433 Identities=31% Similarity=0.510 Sum_probs=320.7
Q ss_pred hccCCEEEEEcCCCCCChHHHHHHHHHHHhcC-CCEEEEEcCCCCCCchhhhhhhhcCCCceeEEEecC-CCCCCCcchh
Q 045267 7 AQAAPHIVLLPSPGMGHLIPLIEFAKRLVHRH-HFLVTFFIPSDGPPSEAQKSTLESLPSSINSVFLPV-SLNDVAEDAR 84 (482)
Q Consensus 7 ~~~~~~ili~~~~~~GH~~P~l~La~~L~~r~-GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~ 84 (482)
.+.+.||+++|+|++||++|++.||++|+.++ ||.|||++++.+..... .... ..+++|..+|. ..++.....+
T Consensus 7 ~~~~~hVvlvp~pa~GHi~P~l~LA~~L~~~~~G~~VT~~~t~~~~~~i~--~~~~--~~gi~fv~lp~~~p~~~~~~~~ 82 (459)
T PLN02448 7 PTTSCHVVAMPYPGRGHINPMMNLCKLLASRKPDILITFVVTEEWLGLIG--SDPK--PDNIRFATIPNVIPSELVRAAD 82 (459)
T ss_pred CCCCcEEEEECCcccccHHHHHHHHHHHHcCCCCcEEEEEeCCchHhHhh--ccCC--CCCEEEEECCCCCCCccccccC
Confidence 45678999999999999999999999997643 99999999987654211 1111 23688888872 1122111111
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHhhC--CCccEEEeCCCCccHHHHHHHcCCccEEEccchHHHHHHHhhhhhhhccCCC
Q 045267 85 AETVISLTVLRSLPCLRQELTSLVAK--ATVAALVVDLFGTDAFDVAQEFNISPYIFYPSTAMCLSLFLHLEKLDQMVPR 162 (482)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~l~~~~~~--~~pD~vi~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (482)
....+..+ ...+...+++++++ .++|+||+|.+.+|+..+|+++|||++.++++++..++.+.+.+........
T Consensus 83 ~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~VI~D~~~~wa~~vA~~lgIP~v~f~~~~a~~~~~~~~~~~~~~~~~~ 158 (459)
T PLN02448 83 FPGFLEAV----MTKMEAPFEQLLDRLEPPVTAIVADTYLFWAVGVGNRRNIPVASLWTMSATFFSVFYHFDLLPQNGHF 158 (459)
T ss_pred HHHHHHHH----HHHhHHHHHHHHHhcCCCcEEEEECCccHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHhhhhhhccCC
Confidence 11112222 22233344444433 3689999999999999999999999999999998777766665432211000
Q ss_pred CCcccC-CCCcc-cCCCCCccccCCCCcccccccchHHHHHHHHHhhcccccEEEEcCccccchhHHHHhhhcCCCCCCC
Q 045267 163 DCEYRD-MSEPV-QIPGCIPVHGGYLLDPVQDRKNEAYRWVLHHAKRYKLAEGIIVNSFTDLEGGALKALQHQDEPGKPP 240 (482)
Q Consensus 163 ~~~~~~-~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~p~~p~ 240 (482)
+..... ....+ .+|++.++...+++..+.+.....++.+.........++++++|||++||+.+.+++... ..++
T Consensus 159 ~~~~~~~~~~~~~~iPg~~~l~~~dlp~~~~~~~~~~~~~~~~~~~~~~~~~~vlvNTf~eLE~~~~~~l~~~---~~~~ 235 (459)
T PLN02448 159 PVELSESGEERVDYIPGLSSTRLSDLPPIFHGNSRRVLKRILEAFSWVPKAQYLLFTSFYELEAQAIDALKSK---FPFP 235 (459)
T ss_pred CCccccccCCccccCCCCCCCChHHCchhhcCCchHHHHHHHHHHhhcccCCEEEEccHHHhhHHHHHHHHhh---cCCc
Confidence 000000 01111 367776677777776554333333555555566667778999999999999988888653 2247
Q ss_pred eEeeccCcCCCCC---C----c-cccccccccccCCCCCcEEEEeccCCCCCCHHHHHHHHHHHHhcCCceEEEEeCCCC
Q 045267 241 VYPVGPLVKTGST---A----E-SKNEGCLKWLDDQPLGSVLFVSFGSGGTLSCEQLNELALGLEMSEQRFLWVVRSPNN 312 (482)
Q Consensus 241 ~~~vGp~~~~~~~---~----~-~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~ 312 (482)
++.|||+...... . . ..+.++.+|++.++++++|||||||+...+.+++.+++.+|+..+.+|||++....
T Consensus 236 ~~~iGP~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~vvyvsfGs~~~~~~~~~~~~~~~l~~~~~~~lw~~~~~~- 314 (459)
T PLN02448 236 VYPIGPSIPYMELKDNSSSSNNEDNEPDYFQWLDSQPEGSVLYVSLGSFLSVSSAQMDEIAAGLRDSGVRFLWVARGEA- 314 (459)
T ss_pred eEEecCcccccccCCCccccccccchhHHHHHHcCCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCCEEEEEcCch-
Confidence 9999999753210 0 0 11247889999998899999999999888899999999999999999999876421
Q ss_pred CCCCcccccCCCCCCCCCCchhHHhhhcCCCeeeccccchhhhhhcccccccccccCchhHHHHhhcCCcEeeccccccc
Q 045267 313 AANSTFFSVNSHKDPYDFLPKGFLDRTKGRGMLVPSWAPQAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAWPLYAEQ 392 (482)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~ipq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ 392 (482)
.++.++.. .|+++.+|+||.+||+|++|++||||||+||+.||+++|||||++|+++||
T Consensus 315 --------------------~~~~~~~~-~~~~v~~w~pQ~~iL~h~~v~~fvtHgG~nS~~eal~~GvP~l~~P~~~DQ 373 (459)
T PLN02448 315 --------------------SRLKEICG-DMGLVVPWCDQLKVLCHSSVGGFWTHCGWNSTLEAVFAGVPMLTFPLFWDQ 373 (459)
T ss_pred --------------------hhHhHhcc-CCEEEeccCCHHHHhccCccceEEecCchhHHHHHHHcCCCEEeccccccc
Confidence 23333332 367788999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHhhcceeeeeccC--CCCccCHHHHHHHHHHHhcCC--chHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHH
Q 045267 393 KMNAVILTEDVKLALRPKAN--ENGIVGRDEIAKVVKALMEGE--QGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLAS 468 (482)
Q Consensus 393 ~~na~rv~~~~G~G~~l~~~--~~~~~~~~~l~~ai~~vl~~~--~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~ 468 (482)
+.||+++++.+|+|+.+... +++.+++++|+++|+++|.++ +|++||+||+++++++++++.+|||+++++++|++
T Consensus 374 ~~na~~v~~~~g~G~~~~~~~~~~~~~~~~~l~~av~~vl~~~~~~~~~~r~~a~~~~~~~~~a~~~gGss~~~l~~~v~ 453 (459)
T PLN02448 374 PLNSKLIVEDWKIGWRVKREVGEETLVGREEIAELVKRFMDLESEEGKEMRRRAKELQEICRGAIAKGGSSDTNLDAFIR 453 (459)
T ss_pred hhhHHHHHHHhCceEEEecccccCCcCcHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 99999998746888887532 123489999999999999874 47899999999999999999999999999999999
Q ss_pred HHhh
Q 045267 469 KWNN 472 (482)
Q Consensus 469 ~~~~ 472 (482)
+++.
T Consensus 454 ~~~~ 457 (459)
T PLN02448 454 DISQ 457 (459)
T ss_pred HHhc
Confidence 9874
No 21
>PLN02167 UDP-glycosyltransferase family protein
Probab=100.00 E-value=2.1e-59 Score=478.58 Aligned_cols=447 Identities=37% Similarity=0.625 Sum_probs=329.1
Q ss_pred ccCCEEEEEcCCCCCChHHHHHHHHHHHhcCCC---EEEEEcCCCCCCchhhhhhhhcC---CCceeEEEecCCCCCCCc
Q 045267 8 QAAPHIVLLPSPGMGHLIPLIEFAKRLVHRHHF---LVTFFIPSDGPPSEAQKSTLESL---PSSINSVFLPVSLNDVAE 81 (482)
Q Consensus 8 ~~~~~ili~~~~~~GH~~P~l~La~~L~~r~GH---~Vt~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~ 81 (482)
|++.||+++|+|++||++|++.||+.|+.+ |. .||++++..+... ..+...... ..+++|..+|.... .+.
T Consensus 1 ~~~~hVv~~PfpaqGHi~P~l~LAk~La~~-G~~~t~vt~~~t~~~~~~-~~~~~~~~~~~~~~~i~~~~lp~~~~-p~~ 77 (475)
T PLN02167 1 KKEAELIFVPFPSTGHILVTIEFAKRLINL-DRRIHTITILYWSLPFAP-QADAFLKSLIASEPRIRLVTLPEVQD-PPP 77 (475)
T ss_pred CCccEEEEeCChhhhhHHHHHHHHHHHHhC-CCCeEEEEEEECCCCcch-hhhHHHhhcccCCCCeEEEECCCCCC-Ccc
Confidence 567799999999999999999999999887 83 5677665433220 011111111 12599999982211 111
Q ss_pred c---h-hhHHHHHHHHHhhhHHHHHHHHHHhhC-----C-CccEEEeCCCCccHHHHHHHcCCccEEEccchHHHHHHHh
Q 045267 82 D---A-RAETVISLTVLRSLPCLRQELTSLVAK-----A-TVAALVVDLFGTDAFDVAQEFNISPYIFYPSTAMCLSLFL 151 (482)
Q Consensus 82 ~---~-~~~~~~~~~~~~~~~~l~~~l~~~~~~-----~-~pD~vi~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~ 151 (482)
. . .....+..+.....+.+++.++++..+ . ++++||+|.+.+|+..+|+++|||++.|+++++..++.+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~pv~cvV~D~f~~Wa~dVA~elgIP~v~F~t~~A~~~~~~~ 157 (475)
T PLN02167 78 MELFVKASEAYILEFVKKMVPLVRDALSTLVSSRDESDSVRVAGLVLDFFCVPLIDVGNEFNLPSYIFLTCNAGFLGMMK 157 (475)
T ss_pred ccccccchHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCeEEEEECCccHHHHHHHHHhCCCEEEEECccHHHHHHHH
Confidence 0 1 111233334444455566666655422 1 3599999999999999999999999999999998888777
Q ss_pred hhhhhhccCCCCCcccCCCCcccCCCC-CccccCCCCcccccccchHHHHHHHHHhhcccccEEEEcCccccchhHHHHh
Q 045267 152 HLEKLDQMVPRDCEYRDMSEPVQIPGC-IPVHGGYLLDPVQDRKNEAYRWVLHHAKRYKLAEGIIVNSFTDLEGGALKAL 230 (482)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~ 230 (482)
+.+........+........++.+||+ .+++..+++..++... .+..+.........++++++|||++||..+.+++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~iPgl~~~l~~~dlp~~~~~~~--~~~~~~~~~~~~~~a~~vlvNTf~eLE~~~~~~l 235 (475)
T PLN02167 158 YLPERHRKTASEFDLSSGEEELPIPGFVNSVPTKVLPPGLFMKE--SYEAWVEIAERFPEAKGILVNSFTELEPNAFDYF 235 (475)
T ss_pred HHHHhccccccccccCCCCCeeECCCCCCCCChhhCchhhhCcc--hHHHHHHHHHhhcccCEeeeccHHHHHHHHHHHH
Confidence 665422211100000000123457887 3577777775443321 2334445556677788999999999999999888
Q ss_pred hhcCCCCCCCeEeeccCcCCCCC---C--ccccccccccccCCCCCcEEEEeccCCCCCCHHHHHHHHHHHHhcCCceEE
Q 045267 231 QHQDEPGKPPVYPVGPLVKTGST---A--ESKNEGCLKWLDDQPLGSVLFVSFGSGGTLSCEQLNELALGLEMSEQRFLW 305 (482)
Q Consensus 231 ~~~~~p~~p~~~~vGp~~~~~~~---~--~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~ 305 (482)
..... ..|+++.|||++..... . ...+.+|.+||+.++++++|||||||+...+.+++.+++.+|+.++.+|||
T Consensus 236 ~~~~~-~~p~v~~vGpl~~~~~~~~~~~~~~~~~~~~~wld~~~~~svvyvsfGS~~~~~~~~~~ela~~l~~~~~~flw 314 (475)
T PLN02167 236 SRLPE-NYPPVYPVGPILSLKDRTSPNLDSSDRDRIMRWLDDQPESSVVFLCFGSLGSLPAPQIKEIAQALELVGCRFLW 314 (475)
T ss_pred Hhhcc-cCCeeEEeccccccccccCCCCCcchhHHHHHHHhcCCCCceEEEeecccccCCHHHHHHHHHHHHhCCCcEEE
Confidence 65211 23689999999764321 0 112257999999999899999999999889999999999999999999999
Q ss_pred EEeCCCCCCCCcccccCCCCCCCCCCchhHHhhhcCCCeeeccccchhhhhhcccccccccccCchhHHHHhhcCCcEee
Q 045267 306 VVRSPNNAANSTFFSVNSHKDPYDFLPKGFLDRTKGRGMLVPSWAPQAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIA 385 (482)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~ipq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~ 385 (482)
+++.+... . ......+|++|.++..+++ ++++|+||.+||+|++|++||||||+||++||+++|||||+
T Consensus 315 ~~~~~~~~---------~-~~~~~~lp~~~~er~~~rg-~v~~w~PQ~~iL~h~~vg~fvtH~G~nS~~Eal~~GvP~l~ 383 (475)
T PLN02167 315 SIRTNPAE---------Y-ASPYEPLPEGFMDRVMGRG-LVCGWAPQVEILAHKAIGGFVSHCGWNSVLESLWFGVPIAT 383 (475)
T ss_pred EEecCccc---------c-cchhhhCChHHHHHhccCe-eeeccCCHHHHhcCcccCeEEeeCCcccHHHHHHcCCCEEe
Confidence 99753210 0 0112358999999998776 45599999999999999999999999999999999999999
Q ss_pred ccccccchhhHHH-HHhhcceeeeeccC---C-CCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchH
Q 045267 386 WPLYAEQKMNAVI-LTEDVKLALRPKAN---E-NGIVGRDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSST 460 (482)
Q Consensus 386 ~P~~~DQ~~na~r-v~~~~G~G~~l~~~---~-~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~ 460 (482)
+|+++||+.||++ +++ +|+|+.+... + ++.+++++|+++|+++|.++ ++||+||+++++.+++++.+|||+.
T Consensus 384 ~P~~~DQ~~na~~~~~~-~g~g~~~~~~~~~~~~~~~~~~~l~~av~~~m~~~--~~~r~~a~~~~~~~~~av~~gGsS~ 460 (475)
T PLN02167 384 WPMYAEQQLNAFTMVKE-LGLAVELRLDYVSAYGEIVKADEIAGAVRSLMDGE--DVPRKKVKEIAEAARKAVMDGGSSF 460 (475)
T ss_pred ccccccchhhHHHHHHH-hCeeEEeecccccccCCcccHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHhCCCcHH
Confidence 9999999999986 667 9999998643 1 12379999999999999764 3899999999999999999999999
Q ss_pred HHHHHHHHHHhhcc
Q 045267 461 KALSQLASKWNNNE 474 (482)
Q Consensus 461 ~~~~~~~~~~~~~~ 474 (482)
+++++|++.++.-+
T Consensus 461 ~~l~~~v~~i~~~~ 474 (475)
T PLN02167 461 VAVKRFIDDLLGDH 474 (475)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999987643
No 22
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=100.00 E-value=3.4e-47 Score=390.40 Aligned_cols=395 Identities=19% Similarity=0.236 Sum_probs=272.8
Q ss_pred EEEE-EcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCCchhhhhhhhcCCCceeEEEecCCCCCCC-----cc-hh
Q 045267 12 HIVL-LPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPPSEAQKSTLESLPSSINSVFLPVSLNDVA-----ED-AR 84 (482)
Q Consensus 12 ~ili-~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~-~~ 84 (482)
||+. +|.++.+|+.-+.+|+++|++| ||+||++++......... ...+++...++...+... .. ..
T Consensus 22 kIl~~~P~~~~SH~~~~~~l~~~La~r-GH~VTvi~p~~~~~~~~~------~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 94 (507)
T PHA03392 22 RILAVFPTPAYSHHSVFKVYVEALAER-GHNVTVIKPTLRVYYASH------LCGNITEIDASLSVEYFKKLVKSSAVFR 94 (507)
T ss_pred cEEEEcCCCCCcHHHHHHHHHHHHHHc-CCeEEEEecccccccccC------CCCCEEEEEcCCChHHHHHHHhhhhHHH
Confidence 4664 4889999999999999999999 999999987632110000 022344444431111000 00 00
Q ss_pred h-------HHH---HHHHHHhhhH-HH-HHHHHHHhh--CCCccEEEeCCCCccHHHHHHHc-CCccEEEccchHHHHHH
Q 045267 85 A-------ETV---ISLTVLRSLP-CL-RQELTSLVA--KATVAALVVDLFGTDAFDVAQEF-NISPYIFYPSTAMCLSL 149 (482)
Q Consensus 85 ~-------~~~---~~~~~~~~~~-~l-~~~l~~~~~--~~~pD~vi~D~~~~~~~~~A~~l-gIP~v~~~~~~~~~~~~ 149 (482)
. ... .........+ .+ ...+.++++ +.++|+||+|.+..++..+|+.+ ++|+|.+++........
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~L~~~~~kFDlvi~e~~~~c~~~la~~~~~~p~i~~ss~~~~~~~~ 174 (507)
T PHA03392 95 KRGVVADSSTVTADNYMGLVRMISDQFDLPNVKNLIANKNNKFDLLVTEAFLDYPLVFSHLFGDAPVIQISSGYGLAENF 174 (507)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHCCHHHHHHHhcCCCceeEEEecccchhHHHHHHHhCCCCEEEEcCCCCchhHH
Confidence 0 000 0000000111 11 122334444 66899999999888888899999 99988776654432111
Q ss_pred HhhhhhhhccCCCCCcccCCCCcccCCCCCccccCCCCccc--ccccchHHHHH----------------HHHH-h----
Q 045267 150 FLHLEKLDQMVPRDCEYRDMSEPVQIPGCIPVHGGYLLDPV--QDRKNEAYRWV----------------LHHA-K---- 206 (482)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~--~~~~~~~~~~~----------------~~~~-~---- 206 (482)
... . +.+. .|.+.|.....+...+ ++|..+.+... .++. .
T Consensus 175 ~~~-----g-----------g~p~-~~syvP~~~~~~~~~Msf~~R~~N~~~~~~~~~~~~~~~~~~~~l~~~~f~~~~~ 237 (507)
T PHA03392 175 ETM-----G-----------AVSR-HPVYYPNLWRSKFGNLNVWETINEIYTELRLYNEFSLLADEQNKLLKQQFGPDTP 237 (507)
T ss_pred Hhh-----c-----------cCCC-CCeeeCCcccCCCCCCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcCCCCC
Confidence 000 0 0111 1455555555454443 56654432111 0111 0
Q ss_pred ----hcccccEEEEcCccccchhHHHHhhhcCCCCCCCeEeeccCcCCCCCCccccccccccccCCCCCcEEEEeccCCC
Q 045267 207 ----RYKLAEGIIVNSFTDLEGGALKALQHQDEPGKPPVYPVGPLVKTGSTAESKNEGCLKWLDDQPLGSVLFVSFGSGG 282 (482)
Q Consensus 207 ----~~~~~~~~~~~s~~~l~~~~~~~~~~~~~p~~p~~~~vGp~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~ 282 (482)
.......+++|+.+.++++ +|..|++++|||++.+.....+.++++++|++..+ +++|||||||+.
T Consensus 238 ~~~~l~~~~~l~lvns~~~~d~~---------rp~~p~v~~vGgi~~~~~~~~~l~~~l~~fl~~~~-~g~V~vS~GS~~ 307 (507)
T PHA03392 238 TIRELRNRVQLLFVNVHPVFDNN---------RPVPPSVQYLGGLHLHKKPPQPLDDYLEEFLNNST-NGVVYVSFGSSI 307 (507)
T ss_pred CHHHHHhCCcEEEEecCccccCC---------CCCCCCeeeecccccCCCCCCCCCHHHHHHHhcCC-CcEEEEECCCCC
Confidence 0112345577777777766 88999999999998754333567899999998875 579999999984
Q ss_pred ---CCCHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCcccccCCCCCCCCCCchhHHhhhcCCCeeeccccchhhhhhcc
Q 045267 283 ---TLSCEQLNELALGLEMSEQRFLWVVRSPNNAANSTFFSVNSHKDPYDFLPKGFLDRTKGRGMLVPSWAPQAQVLSHG 359 (482)
Q Consensus 283 ---~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~ipq~~lL~~~ 359 (482)
..+.+.++.+++|++..+.++||+.+.... . ..+| +|+++.+|+||.++|+|+
T Consensus 308 ~~~~~~~~~~~~~l~a~~~l~~~viw~~~~~~~-------------~--~~~p---------~Nv~i~~w~Pq~~lL~hp 363 (507)
T PHA03392 308 DTNDMDNEFLQMLLRTFKKLPYNVLWKYDGEVE-------------A--INLP---------ANVLTQKWFPQRAVLKHK 363 (507)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCeEEEEECCCcC-------------c--ccCC---------CceEEecCCCHHHHhcCC
Confidence 357788999999999999999999875321 0 1233 489999999999999998
Q ss_pred cccccccccCchhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCCCCccCHHHHHHHHHHHhcCCchHHHH
Q 045267 360 STGGFLCHCGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENGIVGRDEIAKVVKALMEGEQGKEVR 439 (482)
Q Consensus 360 ~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r 439 (482)
.|++||||||+||++||+++|||||++|+++||+.||+|+++ +|+|+.+++.+ +++++|+++|+++++|+ +||
T Consensus 364 ~v~~fItHGG~~s~~Eal~~GvP~v~iP~~~DQ~~Na~rv~~-~G~G~~l~~~~---~t~~~l~~ai~~vl~~~---~y~ 436 (507)
T PHA03392 364 NVKAFVTQGGVQSTDEAIDALVPMVGLPMMGDQFYNTNKYVE-LGIGRALDTVT---VSAAQLVLAIVDVIENP---KYR 436 (507)
T ss_pred CCCEEEecCCcccHHHHHHcCCCEEECCCCccHHHHHHHHHH-cCcEEEeccCC---cCHHHHHHHHHHHhCCH---HHH
Confidence 888999999999999999999999999999999999999999 99999999988 99999999999999997 999
Q ss_pred HHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhc
Q 045267 440 NKMKDLKDAAAAVLSENGSSTKALSQLASKWNNN 473 (482)
Q Consensus 440 ~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~~ 473 (482)
+||+++++.+++. .....++++.-+-.-++..
T Consensus 437 ~~a~~ls~~~~~~--p~~~~~~av~~iE~v~r~~ 468 (507)
T PHA03392 437 KNLKELRHLIRHQ--PMTPLHKAIWYTEHVIRNK 468 (507)
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCC
Confidence 9999999999971 2246677776665555443
No 23
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=100.00 E-value=7.5e-49 Score=408.78 Aligned_cols=380 Identities=23% Similarity=0.301 Sum_probs=227.9
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCCchhhhhhhhcCCCceeEEEec--CCCCCCCcchh-hHH-
Q 045267 12 HIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPPSEAQKSTLESLPSSINSVFLP--VSLNDVAEDAR-AET- 87 (482)
Q Consensus 12 ~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~-~~~- 87 (482)
||+++|. +.||+.++..|+++|++| ||+||++++... ..........+++..++ ....+...... ...
T Consensus 2 kvLv~p~-~~SH~~~~~~l~~~L~~r-GH~VTvl~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (500)
T PF00201_consen 2 KVLVFPM-AYSHFIFMRPLAEELAER-GHNVTVLTPSPS------SSLNPSKPSNIRFETYPDPYPEEEFEEIFPEFISK 73 (500)
T ss_dssp -----------SHHHHHHHHHHHHHH--TTSEEEHHHHH------HT------S-CCEEEE-----TT------TTHHHH
T ss_pred EEEEeCC-CcCHHHHHHHHHHHHHhc-CCceEEEEeecc------cccccccccceeeEEEcCCcchHHHhhhhHHHHHH
Confidence 5888884 789999999999999999 999999987531 11111113356666665 22222221111 000
Q ss_pred ---------HHHHHH---HhhhHHHHHHH---------HHHhhCCCccEEEeCCCCccHHHHHHHcCCccEEEccchHHH
Q 045267 88 ---------VISLTV---LRSLPCLRQEL---------TSLVAKATVAALVVDLFGTDAFDVAQEFNISPYIFYPSTAMC 146 (482)
Q Consensus 88 ---------~~~~~~---~~~~~~l~~~l---------~~~~~~~~pD~vi~D~~~~~~~~~A~~lgIP~v~~~~~~~~~ 146 (482)
.+.... ........... .+.+++.++|++|+|.+..|+..+|+.+++|.+.+.+..+..
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~l~d~~l~~~l~~~~fDlvI~d~f~~c~~~la~~l~iP~i~~~s~~~~~ 153 (500)
T PF00201_consen 74 FFSESSFANSFWEMFKMLNAFFDFFSKSCEDLLSDPELMEQLKSEKFDLVISDAFDPCGLALAHYLGIPVIIISSSTPMY 153 (500)
T ss_dssp HHHHHCCHHHHHHHHHHHHCHHHS----E--EEEETTSTTHHHHHHHCT-EEEEEESSHHHHHHHHHHTHHHHHHCCSCS
T ss_pred HhhhcccchhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhccccceEeeccchhHHHHHHhcCCeEEEecccccc
Confidence 011110 00011111111 111233489999999998888899999999976543322111
Q ss_pred HHHHhhhhhhhccCCCCCcccCC-CCcccCCCCCccccCCCCccc--ccccchHHHHHHHHH--hhcccc-c--EEEEc-
Q 045267 147 LSLFLHLEKLDQMVPRDCEYRDM-SEPVQIPGCIPVHGGYLLDPV--QDRKNEAYRWVLHHA--KRYKLA-E--GIIVN- 217 (482)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~-~--~~~~~- 217 (482)
. ..... +.+. .|++.|...+.++..+ ++|..+.+..+.... ...... + .....
T Consensus 154 --------~---------~~~~~~g~p~-~psyvP~~~s~~~~~msf~~Ri~N~l~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (500)
T PF00201_consen 154 --------D---------LSSFSGGVPS-PPSYVPSMFSDFSDRMSFWQRIKNFLFYLYFRFIFRYFFSPQDKLYKKYFG 215 (500)
T ss_dssp --------C---------CTCCTSCCCT-STTSTTCBCCCSGTTSSSST--TTSHHHHHHHHHHHHGGGS-TTS-EEESS
T ss_pred --------h---------hhhhccCCCC-ChHHhccccccCCCccchhhhhhhhhhhhhhccccccchhhHHHHHhhhcc
Confidence 0 00001 1122 3666666666665554 566555443322111 111100 0 00011
Q ss_pred ---CccccchhHHHHhhh------cCCCCCCCeEeeccCcCCCCCCccccccccccccCCCCCcEEEEeccCCCCCCHH-
Q 045267 218 ---SFTDLEGGALKALQH------QDEPGKPPVYPVGPLVKTGSTAESKNEGCLKWLDDQPLGSVLFVSFGSGGTLSCE- 287 (482)
Q Consensus 218 ---s~~~l~~~~~~~~~~------~~~p~~p~~~~vGp~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~- 287 (482)
+..++.......+.+ .|+|..|+++++|+++..+. .+.+++++.|++...++++|||||||+....++
T Consensus 216 ~~~~~~~~~~~~~l~l~ns~~~ld~prp~~p~v~~vGgl~~~~~--~~l~~~~~~~~~~~~~~~vv~vsfGs~~~~~~~~ 293 (500)
T PF00201_consen 216 FPFSFRELLSNASLVLINSHPSLDFPRPLLPNVVEVGGLHIKPA--KPLPEELWNFLDSSGKKGVVYVSFGSIVSSMPEE 293 (500)
T ss_dssp -GGGCHHHHHHHHHCCSSTEEE----HHHHCTSTTGCGC-S------TCHHHHHHHTSTTTTTEEEEEE-TSSSTT-HHH
T ss_pred cccccHHHHHHHHHHhhhccccCcCCcchhhcccccCccccccc--cccccccchhhhccCCCCEEEEecCcccchhHHH
Confidence 111111222222222 24677789999999987654 467889999999855678999999998654444
Q ss_pred HHHHHHHHHHhcCCceEEEEeCCCCCCCCcccccCCCCCCCCCCchhHHhhhcCCCeeeccccchhhhhhcccccccccc
Q 045267 288 QLNELALGLEMSEQRFLWVVRSPNNAANSTFFSVNSHKDPYDFLPKGFLDRTKGRGMLVPSWAPQAQVLSHGSTGGFLCH 367 (482)
Q Consensus 288 ~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~ipq~~lL~~~~~~~~I~H 367 (482)
..+.++++++.++++|||++.... ...+| .|+++.+|+||.+||+|++|++||||
T Consensus 294 ~~~~~~~~~~~~~~~~iW~~~~~~----------------~~~l~---------~n~~~~~W~PQ~~lL~hp~v~~fitH 348 (500)
T PF00201_consen 294 KLKEIAEAFENLPQRFIWKYEGEP----------------PENLP---------KNVLIVKWLPQNDLLAHPRVKLFITH 348 (500)
T ss_dssp HHHHHHHHHHCSTTEEEEEETCSH----------------GCHHH---------TTEEEESS--HHHHHTSTTEEEEEES
T ss_pred HHHHHHHHHhhCCCcccccccccc----------------ccccc---------ceEEEeccccchhhhhcccceeeeec
Confidence 488899999999999999997521 11223 48899999999999999999999999
Q ss_pred cCchhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Q 045267 368 CGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENGIVGRDEIAKVVKALMEGEQGKEVRNKMKDLKD 447 (482)
Q Consensus 368 GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~ 447 (482)
||+||++||+++|||||++|+++||+.||+++++ .|+|+.++..+ +|.++|.++|+++|+|+ +|++||+++++
T Consensus 349 gG~~s~~Ea~~~gvP~l~~P~~~DQ~~na~~~~~-~G~g~~l~~~~---~~~~~l~~ai~~vl~~~---~y~~~a~~ls~ 421 (500)
T PF00201_consen 349 GGLNSTQEALYHGVPMLGIPLFGDQPRNAARVEE-KGVGVVLDKND---LTEEELRAAIREVLENP---SYKENAKRLSS 421 (500)
T ss_dssp --HHHHHHHHHCT--EEE-GCSTTHHHHHHHHHH-TTSEEEEGGGC----SHHHHHHHHHHHHHSH---HHHHHHHHHHH
T ss_pred cccchhhhhhhccCCccCCCCcccCCccceEEEE-EeeEEEEEecC---CcHHHHHHHHHHHHhhh---HHHHHHHHHHH
Confidence 9999999999999999999999999999999999 99999999998 99999999999999997 99999999999
Q ss_pred HHHH
Q 045267 448 AAAA 451 (482)
Q Consensus 448 ~~~~ 451 (482)
.+++
T Consensus 422 ~~~~ 425 (500)
T PF00201_consen 422 LFRD 425 (500)
T ss_dssp TTT-
T ss_pred HHhc
Confidence 9986
No 24
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=100.00 E-value=3.7e-42 Score=347.50 Aligned_cols=385 Identities=18% Similarity=0.202 Sum_probs=247.7
Q ss_pred EcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCCchhhhhhhhcCCCceeEEEecCCCCC--CCcc---hhhHHHHH
Q 045267 16 LPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPPSEAQKSTLESLPSSINSVFLPVSLND--VAED---ARAETVIS 90 (482)
Q Consensus 16 ~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~---~~~~~~~~ 90 (482)
+.+|+.||++|++.||++|+++ ||+|+|++++.+ +.... ..|+.+..++..... .... ..... +.
T Consensus 1 ~~~p~~Ghv~P~l~lA~~L~~~-Gh~V~~~~~~~~------~~~v~--~~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 70 (392)
T TIGR01426 1 FNIPAHGHVNPTLGVVEELVAR-GHRVTYATTEEF------AERVE--AAGAEFVLYGSALPPPDNPPENTEEEPID-II 70 (392)
T ss_pred CCCCccccccccHHHHHHHHhC-CCeEEEEeCHHH------HHHHH--HcCCEEEecCCcCccccccccccCcchHH-HH
Confidence 3679999999999999999988 999999999843 33344 337888777722111 1111 01111 11
Q ss_pred HHHHhhhHHHHHHHHHHhhCCCccEEEeCCCCccHHHHHHHcCCccEEEccchHHHHHHHhhhhhhhccCCCCCcccCCC
Q 045267 91 LTVLRSLPCLRQELTSLVAKATVAALVVDLFGTDAFDVAQEFNISPYIFYPSTAMCLSLFLHLEKLDQMVPRDCEYRDMS 170 (482)
Q Consensus 91 ~~~~~~~~~l~~~l~~~~~~~~pD~vi~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (482)
..+........+.+.++++..+||+||+|.+.+++..+|+++|||+|.+++.+... . ..+... +
T Consensus 71 ~~~~~~~~~~~~~l~~~~~~~~pDlVi~d~~~~~~~~~A~~~giP~v~~~~~~~~~--~--~~~~~~---~--------- 134 (392)
T TIGR01426 71 EKLLDEAEDVLPQLEEAYKGDRPDLIVYDIASWTGRLLARKWDVPVISSFPTFAAN--E--EFEEMV---S--------- 134 (392)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCEEEECCccHHHHHHHHHhCCCEEEEehhhccc--c--cccccc---c---------
Confidence 11222222222334455566799999999988889999999999999886543211 0 000000 0
Q ss_pred CcccCCCCCccccCCCCcccccccchHHHHHHHHHhhc-ccccEEEEcCccccchhHHHHhhhcCCCCCCCeEeeccCcC
Q 045267 171 EPVQIPGCIPVHGGYLLDPVQDRKNEAYRWVLHHAKRY-KLAEGIIVNSFTDLEGGALKALQHQDEPGKPPVYPVGPLVK 249 (482)
Q Consensus 171 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~l~~~~~~~~~~~~~p~~p~~~~vGp~~~ 249 (482)
+.. +.+.. ...............++.+++....- .....+........-...+..+.+......++++++||+..
T Consensus 135 -~~~-~~~~~--~~~~~~~~~~~~~~~~~~~r~~~gl~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~Gp~~~ 210 (392)
T TIGR01426 135 -PAG-EGSAE--EGAIAERGLAEYVARLSALLEEHGITTPPVEFLAAPRRDLNLVYTPKAFQPAGETFDDSFTFVGPCIG 210 (392)
T ss_pred -ccc-hhhhh--hhccccchhHHHHHHHHHHHHHhCCCCCCHHHHhcCCcCcEEEeCChHhCCCccccCCCeEEECCCCC
Confidence 000 00000 00000000011111122222211100 00000000000000001112222211223458999999875
Q ss_pred CCCCCccccccccccccCCCCCcEEEEeccCCCCCCHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCcccccCCCCCCCC
Q 045267 250 TGSTAESKNEGCLKWLDDQPLGSVLFVSFGSGGTLSCEQLNELALGLEMSEQRFLWVVRSPNNAANSTFFSVNSHKDPYD 329 (482)
Q Consensus 250 ~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (482)
... +..+|....+++++||||+||+.......+..++++++..+.+++|..+.+... ....
T Consensus 211 ~~~-------~~~~~~~~~~~~~~v~vs~Gs~~~~~~~~~~~~~~al~~~~~~~i~~~g~~~~~------------~~~~ 271 (392)
T TIGR01426 211 DRK-------EDGSWERPGDGRPVVLISLGTVFNNQPSFYRTCVEAFRDLDWHVVLSVGRGVDP------------ADLG 271 (392)
T ss_pred Ccc-------ccCCCCCCCCCCCEEEEecCccCCCCHHHHHHHHHHHhcCCCeEEEEECCCCCh------------hHhc
Confidence 432 122366666678899999999876677788889999999999999888654210 0111
Q ss_pred CCchhHHhhhcCCCeeeccccchhhhhhcccccccccccCchhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeee
Q 045267 330 FLPKGFLDRTKGRGMLVPSWAPQAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRP 409 (482)
Q Consensus 330 ~lp~~~~~~~~~~~v~~~~~ipq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l 409 (482)
.+ +.|+.+.+|+||.++|++++ ++|||||+||+.||+++|+|+|++|...||+.||+++++ .|+|..+
T Consensus 272 ~~---------~~~v~~~~~~p~~~ll~~~~--~~I~hgG~~t~~Eal~~G~P~v~~p~~~dq~~~a~~l~~-~g~g~~l 339 (392)
T TIGR01426 272 EL---------PPNVEVRQWVPQLEILKKAD--AFITHGGMNSTMEALFNGVPMVAVPQGADQPMTARRIAE-LGLGRHL 339 (392)
T ss_pred cC---------CCCeEEeCCCCHHHHHhhCC--EEEECCCchHHHHHHHhCCCEEecCCcccHHHHHHHHHH-CCCEEEe
Confidence 12 35888999999999999999 999999999999999999999999999999999999999 9999999
Q ss_pred ccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHh
Q 045267 410 KANENGIVGRDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKWN 471 (482)
Q Consensus 410 ~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~ 471 (482)
...+ +++++|+++|+++|.|+ +|+++++++++++++ .++..++++.+.+.+.
T Consensus 340 ~~~~---~~~~~l~~ai~~~l~~~---~~~~~~~~l~~~~~~----~~~~~~aa~~i~~~~~ 391 (392)
T TIGR01426 340 PPEE---VTAEKLREAVLAVLSDP---RYAERLRKMRAEIRE----AGGARRAADEIEGFLA 391 (392)
T ss_pred cccc---CCHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHH----cCCHHHHHHHHHHhhc
Confidence 8877 99999999999999997 899999999999996 4566677777766543
No 25
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=100.00 E-value=1.9e-42 Score=351.01 Aligned_cols=381 Identities=13% Similarity=0.084 Sum_probs=243.2
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCCchhhhhhhhcCCCceeEEEecCCCCCCCc---------
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPPSEAQKSTLESLPSSINSVFLPVSLNDVAE--------- 81 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------- 81 (482)
|||+|+++|+.||++|+++||++|++| ||+|+|++++.+ +.... ..|+.|..++........
T Consensus 1 mrIl~~~~p~~GHv~P~l~la~~L~~r-Gh~V~~~t~~~~------~~~v~--~~G~~~~~~~~~~~~~~~~~~~~~~~~ 71 (401)
T cd03784 1 MRVLITTIGSRGDVQPLVALAWALRAA-GHEVRVATPPEF------ADLVE--AAGLEFVPVGGDPDELLASPERNAGLL 71 (401)
T ss_pred CeEEEEeCCCcchHHHHHHHHHHHHHC-CCeEEEeeCHhH------HHHHH--HcCCceeeCCCCHHHHHhhhhhccccc
Confidence 689999999999999999999999988 999999999843 23333 346777776621110000
Q ss_pred --chhhHHHHHHHHHhhhHHHHHHHHHHhhCCCccEEEeCCCCccHHHHHHHcCCccEEEccchHHHHHHHhhhhhhhcc
Q 045267 82 --DARAETVISLTVLRSLPCLRQELTSLVAKATVAALVVDLFGTDAFDVAQEFNISPYIFYPSTAMCLSLFLHLEKLDQM 159 (482)
Q Consensus 82 --~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pD~vi~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~ 159 (482)
...........+....+...+.+.+.+++++||+||+|.+.+++..+|+++|||++.+++++....+..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pDlvi~d~~~~~~~~~A~~~giP~v~~~~~~~~~~~~~--------- 142 (401)
T cd03784 72 LLGPGLLLGALRLLRREAEAMLDDLVAAARDWGPDLVVADPLAFAGAVAAEALGIPAVRLLLGPDTPTSAF--------- 142 (401)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCEEEeCcHHHHHHHHHHHhCCCeEEeecccCCccccC---------
Confidence 000111111122222233333334444568999999999888899999999999999887654321000
Q ss_pred CCCCCcccCCCCcccCCCCCccccCCCCccccc-ccchHHHHHHHHHhhcccccEEEE-----cCccccchhHHHHhhhc
Q 045267 160 VPRDCEYRDMSEPVQIPGCIPVHGGYLLDPVQD-RKNEAYRWVLHHAKRYKLAEGIIV-----NSFTDLEGGALKALQHQ 233 (482)
Q Consensus 160 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~s~~~l~~~~~~~~~~~ 233 (482)
+ | +.... ....... ........+.......+...++-. .........++..+...
T Consensus 143 -~--------------~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~ 203 (401)
T cd03784 143 -P--------------P---PLGRA-NLRLYALLEAELWQDLLGAWLRARRRRLGLPPLSLLDGSDVPELYGFSPAVLPP 203 (401)
T ss_pred -C--------------C---ccchH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccccCCCcEEEecCcccCCC
Confidence 0 0 00000 0000000 000000111111111111111100 00000011111111111
Q ss_pred CCCCCCCeEeeccCcCCCCCCccccccccccccCCCCCcEEEEeccCCCCCC-HHHHHHHHHHHHhcCCceEEEEeCCCC
Q 045267 234 DEPGKPPVYPVGPLVKTGSTAESKNEGCLKWLDDQPLGSVLFVSFGSGGTLS-CEQLNELALGLEMSEQRFLWVVRSPNN 312 (482)
Q Consensus 234 ~~p~~p~~~~vGp~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~-~~~~~~~~~al~~~~~~~i~~~~~~~~ 312 (482)
+.+..++..++|......+.....+.++..|++.. +++|||++||+.... ...+..++++++..+.++||+.+....
T Consensus 204 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~--~~~v~v~~Gs~~~~~~~~~~~~~~~a~~~~~~~~i~~~g~~~~ 281 (401)
T cd03784 204 PPDWPRFDLVTGYGFRDVPYNGPPPPELWLFLAAG--RPPVYVGFGSMVVRDPEALARLDVEAVATLGQRAILSLGWGGL 281 (401)
T ss_pred CCCccccCcEeCCCCCCCCCCCCCCHHHHHHHhCC--CCcEEEeCCCCcccCHHHHHHHHHHHHHHcCCeEEEEccCccc
Confidence 12233356677633333222234556677788653 569999999986644 456788999999999999999876432
Q ss_pred CCCCcccccCCCCCCCCCCchhHHhhhcCCCeeeccccchhhhhhcccccccccccCchhHHHHhhcCCcEeeccccccc
Q 045267 313 AANSTFFSVNSHKDPYDFLPKGFLDRTKGRGMLVPSWAPQAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAWPLYAEQ 392 (482)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~ipq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ 392 (482)
. ... .++|+++.+|+||.++|++++ +||||||+||++||+++|||+|++|+..||
T Consensus 282 ~--------------~~~---------~~~~v~~~~~~p~~~ll~~~d--~~I~hgG~~t~~eal~~GvP~v~~P~~~dQ 336 (401)
T cd03784 282 G--------------AED---------LPDNVRVVDFVPHDWLLPRCA--AVVHHGGAGTTAAALRAGVPQLVVPFFGDQ 336 (401)
T ss_pred c--------------ccC---------CCCceEEeCCCCHHHHhhhhh--eeeecCCchhHHHHHHcCCCEEeeCCCCCc
Confidence 1 011 235899999999999999999 999999999999999999999999999999
Q ss_pred hhhHHHHHhhcceeeeeccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHH
Q 045267 393 KMNAVILTEDVKLALRPKANENGIVGRDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLA 467 (482)
Q Consensus 393 ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~ 467 (482)
+.||+++++ +|+|+.++..+ +++++|.++|++++.+ +++++++++++++++ .++..++++.+.
T Consensus 337 ~~~a~~~~~-~G~g~~l~~~~---~~~~~l~~al~~~l~~----~~~~~~~~~~~~~~~----~~g~~~~~~~ie 399 (401)
T cd03784 337 PFWAARVAE-LGAGPALDPRE---LTAERLAAALRRLLDP----PSRRRAAALLRRIRE----EDGVPSAADVIE 399 (401)
T ss_pred HHHHHHHHH-CCCCCCCCccc---CCHHHHHHHHHHHhCH----HHHHHHHHHHHHHHh----ccCHHHHHHHHh
Confidence 999999999 99999999887 9999999999999985 677778888887764 455556665543
No 26
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=100.00 E-value=1.3e-39 Score=325.82 Aligned_cols=390 Identities=19% Similarity=0.206 Sum_probs=238.5
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCCchhhhhhhhcCCCceeEEEecCCCCCCCcch---h-h
Q 045267 10 APHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPPSEAQKSTLESLPSSINSVFLPVSLNDVAEDA---R-A 85 (482)
Q Consensus 10 ~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~-~ 85 (482)
+|||+++..|+.||++|+++||++|.++ ||+|+|+|++.+. ...+ ..|+.|...+.. +...... . .
T Consensus 1 ~mkil~~~~~~~Ghv~p~~aL~~eL~~~-gheV~~~~~~~~~------~~ve--~ag~~f~~~~~~-~~~~~~~~~~~~~ 70 (406)
T COG1819 1 RMKILFVVCGAYGHVNPCLALGKELRRR-GHEVVFASTGKFK------EFVE--AAGLAFVAYPIR-DSELATEDGKFAG 70 (406)
T ss_pred CceEEEEeccccccccchHHHHHHHHhc-CCeEEEEeCHHHH------HHHH--HhCcceeecccc-CChhhhhhhhhhc
Confidence 4789999999999999999999999888 9999999998543 3333 224566666632 1111111 1 0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhhCCCccEEEeCCCCccHHHHHHHcCCccEEEccchHHHHHHHh-hhhhhhccCCCCC
Q 045267 86 ETVISLTVLRSLPCLRQELTSLVAKATVAALVVDLFGTDAFDVAQEFNISPYIFYPSTAMCLSLFL-HLEKLDQMVPRDC 164 (482)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~l~~~~~~~~pD~vi~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 164 (482)
...+... ..........+.+.+.+..||+|+.|.....+ .+++..++|++.............. +.+..
T Consensus 71 ~~~~~~~-~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 140 (406)
T COG1819 71 VKSFRRL-LQQFKKLIRELLELLRELEPDLVVDDARLSLG-LAARLLGIPVVGINVAPYTPLPAAGLPLPPV-------- 140 (406)
T ss_pred cchhHHH-hhhhhhhhHHHHHHHHhcchhhhhcchhhhhh-hhhhhcccchhhhhhhhccCCcccccCcccc--------
Confidence 1111101 11111111122233445699999999866545 8899999998775554332211110 00000
Q ss_pred cccCCCCcccCCCCCccccCCCCcccccccchHHHHHH-HHHhhccccc---EEEEcCccccchhHHHHhhhcCCC--CC
Q 045267 165 EYRDMSEPVQIPGCIPVHGGYLLDPVQDRKNEAYRWVL-HHAKRYKLAE---GIIVNSFTDLEGGALKALQHQDEP--GK 238 (482)
Q Consensus 165 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~s~~~l~~~~~~~~~~~~~p--~~ 238 (482)
...+....+.. +.+.....+....+. ++.... ++...+.... .-+..+-..+... +....+.| ..
T Consensus 141 ---~~~~~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 211 (406)
T COG1819 141 ---GIAGKLPIPLY-PLPPRLVRPLIFARS--WLPKLVVRRNLGLELGLPNIRRLFASGPLLEIA---YTDVLFPPGDRL 211 (406)
T ss_pred ---ccccccccccc-ccChhhccccccchh--hhhhhhhhhhccccccccchHHHhcCCCCcccc---ccccccCCCCCC
Confidence 00000001110 000010110111110 000000 0000000000 0001111111111 11111111 11
Q ss_pred C-CeEeeccCcCCCCCCccccccccccccCCCCCcEEEEeccCCCCCCHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCc
Q 045267 239 P-PVYPVGPLVKTGSTAESKNEGCLKWLDDQPLGSVLFVSFGSGGTLSCEQLNELALGLEMSEQRFLWVVRSPNNAANST 317 (482)
Q Consensus 239 p-~~~~vGp~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~ 317 (482)
| ...++||+..... .+...| ...++++||+|+||.... .++++.+++++..++.++|...+. ..
T Consensus 212 p~~~~~~~~~~~~~~------~~~~~~--~~~d~~~vyvslGt~~~~-~~l~~~~~~a~~~l~~~vi~~~~~-~~----- 276 (406)
T COG1819 212 PFIGPYIGPLLGEAA------NELPYW--IPADRPIVYVSLGTVGNA-VELLAIVLEALADLDVRVIVSLGG-AR----- 276 (406)
T ss_pred CCCcCcccccccccc------ccCcch--hcCCCCeEEEEcCCcccH-HHHHHHHHHHHhcCCcEEEEeccc-cc-----
Confidence 2 4456666654432 222233 233467999999998766 888999999999999999998865 21
Q ss_pred ccccCCCCCCCCCCchhHHhhhcCCCeeeccccchhhhhhcccccccccccCchhHHHHhhcCCcEeeccccccchhhHH
Q 045267 318 FFSVNSHKDPYDFLPKGFLDRTKGRGMLVPSWAPQAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAWPLYAEQKMNAV 397 (482)
Q Consensus 318 ~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~ipq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~ 397 (482)
.....+|. |+++.+|+||.++|++++ +||||||+|||+|||++|||+|++|...||+.||.
T Consensus 277 --------~~~~~~p~---------n~~v~~~~p~~~~l~~ad--~vI~hGG~gtt~eaL~~gvP~vv~P~~~DQ~~nA~ 337 (406)
T COG1819 277 --------DTLVNVPD---------NVIVADYVPQLELLPRAD--AVIHHGGAGTTSEALYAGVPLVVIPDGADQPLNAE 337 (406)
T ss_pred --------cccccCCC---------ceEEecCCCHHHHhhhcC--EEEecCCcchHHHHHHcCCCEEEecCCcchhHHHH
Confidence 11234554 888999999999999999 99999999999999999999999999999999999
Q ss_pred HHHhhcceeeeeccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhc
Q 045267 398 ILTEDVKLALRPKANENGIVGRDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKWNNN 473 (482)
Q Consensus 398 rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~~ 473 (482)
|+++ +|+|..+..++ ++++.|+++|+++|+|+ .|+++++++++.+++ ++| ...+.+.|.+...+.
T Consensus 338 rve~-~G~G~~l~~~~---l~~~~l~~av~~vL~~~---~~~~~~~~~~~~~~~---~~g-~~~~a~~le~~~~~~ 402 (406)
T COG1819 338 RVEE-LGAGIALPFEE---LTEERLRAAVNEVLADD---SYRRAAERLAEEFKE---EDG-PAKAADLLEEFAREK 402 (406)
T ss_pred HHHH-cCCceecCccc---CCHHHHHHHHHHHhcCH---HHHHHHHHHHHHhhh---ccc-HHHHHHHHHHHHhcc
Confidence 9999 99999999988 99999999999999997 999999999999997 455 444444444444443
No 27
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=100.00 E-value=1.2e-38 Score=332.05 Aligned_cols=391 Identities=29% Similarity=0.417 Sum_probs=249.6
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCCchhhhhhhhcCCCceeE---EEec-CC-CCCCCcchh
Q 045267 10 APHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPPSEAQKSTLESLPSSINS---VFLP-VS-LNDVAEDAR 84 (482)
Q Consensus 10 ~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~-~~-~~~~~~~~~ 84 (482)
+.+++++++|+.||++|++.||+.|+++ ||+||++++.......... . ....+.. ...+ .. .+..+.++.
T Consensus 5 ~~~~il~~~p~~sH~~~~~~la~~L~~~-gh~vt~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (496)
T KOG1192|consen 5 KAHNILVPFPGQSHLNPMLQLAKRLAER-GHNVTVVTPSFNALKLSKS-S---KSKSIKKINPPPFEFLTIPDGLPEGWE 79 (496)
T ss_pred cceeEEEECCcccHHHHHHHHHHHHHHc-CCceEEEEeechhcccCCc-c---cceeeeeeecChHHhhhhhhhhccchH
Confidence 4578899999999999999999999998 9999999987543311100 0 0000111 1111 11 123333332
Q ss_pred hH-----HHHHHHHHhhhHHHHHHHHHHh--hCCCccEEEeCCCCccHHHHHHHcC-CccEEEccchHHHHHHHhhhhhh
Q 045267 85 AE-----TVISLTVLRSLPCLRQELTSLV--AKATVAALVVDLFGTDAFDVAQEFN-ISPYIFYPSTAMCLSLFLHLEKL 156 (482)
Q Consensus 85 ~~-----~~~~~~~~~~~~~l~~~l~~~~--~~~~pD~vi~D~~~~~~~~~A~~lg-IP~v~~~~~~~~~~~~~~~~~~~ 156 (482)
.. .............+.+.+..+. ...++|++|+|.+..+...+|.... |+...+.+..........+.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~d~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~g~~~~~~ 159 (496)
T KOG1192|consen 80 DDDLDISESLLELNKTCEDLLRDPLEKLLLLKSEKFDLIISDPFLGLFLLLAIPSFVIPLLSFPTSSAVLLALGLPSPLS 159 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhcCCccEEEechhhHHHHHhcccceEEEeecccCchHHHHhcCCcCccc
Confidence 11 1112222223333444333332 2334999999997666666676664 88888877766654333222111
Q ss_pred hccCCCCCcccCCCCcccCCCCCccccCCCCcccccccchHHHHHH-----------------HHH-hhc----ccccEE
Q 045267 157 DQMVPRDCEYRDMSEPVQIPGCIPVHGGYLLDPVQDRKNEAYRWVL-----------------HHA-KRY----KLAEGI 214 (482)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~-~~~----~~~~~~ 214 (482)
. +|........ ....+.++..+...... ... ... .....+
T Consensus 160 --~---------------~p~~~~~~~~-~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 221 (496)
T KOG1192|consen 160 --Y---------------VPSPFSLSSG-DDMSFPERVPNLIKKDLPSFLFSLSDDRKQDKISKELLGDILNWKPTASGI 221 (496)
T ss_pred --c---------------cCcccCcccc-ccCcHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCCcccccccHHHh
Confidence 0 1111000000 11112222211110000 000 000 111123
Q ss_pred EEcC-ccccchhHHHHhhhcCCCCCCCeEeeccCcCCCCCCccccccccccccCCCCC--cEEEEeccCCC---CCCHHH
Q 045267 215 IVNS-FTDLEGGALKALQHQDEPGKPPVYPVGPLVKTGSTAESKNEGCLKWLDDQPLG--SVLFVSFGSGG---TLSCEQ 288 (482)
Q Consensus 215 ~~~s-~~~l~~~~~~~~~~~~~p~~p~~~~vGp~~~~~~~~~~~~~~~~~~l~~~~~~--~~v~vs~GS~~---~~~~~~ 288 (482)
+.++ +..++.+....+. ++|..|++++|||+......... ..+.+|++..+.. ++|||||||+. ..+.+.
T Consensus 222 ~~~~~~~~ln~~~~~~~~--~~~~~~~v~~IG~l~~~~~~~~~--~~~~~wl~~~~~~~~~vvyvSfGS~~~~~~lp~~~ 297 (496)
T KOG1192|consen 222 IVNASFIFLNSNPLLDFE--PRPLLPKVIPIGPLHVKDSKQKS--PLPLEWLDILDESRHSVVYISFGSMVNSADLPEEQ 297 (496)
T ss_pred hhcCeEEEEccCcccCCC--CCCCCCCceEECcEEecCccccc--cccHHHHHHHhhccCCeEEEECCcccccccCCHHH
Confidence 3333 5555554332222 24567899999999887432222 1344566555544 79999999997 799999
Q ss_pred HHHHHHHHHhc-CCceEEEEeCCCCCCCCcccccCCCCCCCCCCchhHHhhhcCCCeeeccccchhhh-hhccccccccc
Q 045267 289 LNELALGLEMS-EQRFLWVVRSPNNAANSTFFSVNSHKDPYDFLPKGFLDRTKGRGMLVPSWAPQAQV-LSHGSTGGFLC 366 (482)
Q Consensus 289 ~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~ipq~~l-L~~~~~~~~I~ 366 (482)
...++.+++.+ +..|+|++..... ..+++++.++ ...||...+|+||.++ |.|+++++|||
T Consensus 298 ~~~l~~~l~~~~~~~FiW~~~~~~~----------------~~~~~~~~~~-~~~nV~~~~W~PQ~~lll~H~~v~~FvT 360 (496)
T KOG1192|consen 298 KKELAKALESLQGVTFLWKYRPDDS----------------IYFPEGLPNR-GRGNVVLSKWAPQNDLLLDHPAVGGFVT 360 (496)
T ss_pred HHHHHHHHHhCCCceEEEEecCCcc----------------hhhhhcCCCC-CcCceEEecCCCcHHHhcCCCcCcEEEE
Confidence 99999999999 7789999986432 1133444333 3458888899999998 59999999999
Q ss_pred ccCchhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHH
Q 045267 367 HCGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENGIVGRDEIAKVVKALMEGEQGKEVRNKMKDLK 446 (482)
Q Consensus 367 HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~ 446 (482)
|||+|||+|++++|||||++|+++||+.||+++++ .|.|..+.+.+ ++.+.+..++.+++.++ +|++++++++
T Consensus 361 HgG~nSt~E~~~~GvP~v~~Plf~DQ~~Na~~i~~-~g~~~v~~~~~---~~~~~~~~~~~~il~~~---~y~~~~~~l~ 433 (496)
T KOG1192|consen 361 HGGWNSTLESIYSGVPMVCVPLFGDQPLNARLLVR-HGGGGVLDKRD---LVSEELLEAIKEILENE---EYKEAAKRLS 433 (496)
T ss_pred CCcccHHHHHHhcCCceecCCccccchhHHHHHHh-CCCEEEEehhh---cCcHHHHHHHHHHHcCh---HHHHHHHHHH
Confidence 99999999999999999999999999999999999 88888877776 67666999999999997 9999999999
Q ss_pred HHHHH
Q 045267 447 DAAAA 451 (482)
Q Consensus 447 ~~~~~ 451 (482)
+.+++
T Consensus 434 ~~~~~ 438 (496)
T KOG1192|consen 434 EILRD 438 (496)
T ss_pred HHHHc
Confidence 99885
No 28
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=99.95 E-value=2.9e-25 Score=219.45 Aligned_cols=323 Identities=17% Similarity=0.157 Sum_probs=198.3
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCCchhhhhhhhcCCCceeEEEecC-CCCCCCcchhhHHHH
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPPSEAQKSTLESLPSSINSVFLPV-SLNDVAEDARAETVI 89 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~ 89 (482)
++|+|.+.|+.||++|.++||++|.++ ||+|.|++.....+. .+.. ..++.+..++. .... ..........
T Consensus 2 ~~i~~~~GGTGGHi~Pala~a~~l~~~-g~~v~~vg~~~~~e~----~l~~--~~g~~~~~~~~~~l~~-~~~~~~~~~~ 73 (352)
T PRK12446 2 KKIVFTGGGSAGHVTPNLAIIPYLKED-NWDISYIGSHQGIEK----TIIE--KENIPYYSISSGKLRR-YFDLKNIKDP 73 (352)
T ss_pred CeEEEEcCCcHHHHHHHHHHHHHHHhC-CCEEEEEECCCcccc----ccCc--ccCCcEEEEeccCcCC-CchHHHHHHH
Confidence 369999999999999999999999887 999999997654331 1111 22577777762 2111 1011111111
Q ss_pred HHHHHhhhHHHHHHHHHHhhCCCccEEEeCCCCcc--HHHHHHHcCCccEEEccchHHHHHHHhhhhhhhccCCCCCccc
Q 045267 90 SLTVLRSLPCLRQELTSLVAKATVAALVVDLFGTD--AFDVAQEFNISPYIFYPSTAMCLSLFLHLEKLDQMVPRDCEYR 167 (482)
Q Consensus 90 ~~~~~~~~~~l~~~l~~~~~~~~pD~vi~D~~~~~--~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (482)
..... .+.+. ..++++.+||+||....+.. +..+|+.+++|+++.-...
T Consensus 74 ~~~~~----~~~~~-~~i~~~~kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~e~n~------------------------ 124 (352)
T PRK12446 74 FLVMK----GVMDA-YVRIRKLKPDVIFSKGGFVSVPVVIGGWLNRVPVLLHESDM------------------------ 124 (352)
T ss_pred HHHHH----HHHHH-HHHHHhcCCCEEEecCchhhHHHHHHHHHcCCCEEEECCCC------------------------
Confidence 11111 11111 13356779999998774443 4579999999987632211
Q ss_pred CCCCcccCCCCCccccCCCCcccccccchHHHHHHHHHhhcccccEEEEcCccccchhHHHHhhhcCCCCCCCeEeeccC
Q 045267 168 DMSEPVQIPGCIPVHGGYLLDPVQDRKNEAYRWVLHHAKRYKLAEGIIVNSFTDLEGGALKALQHQDEPGKPPVYPVGPL 247 (482)
Q Consensus 168 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~p~~p~~~~vGp~ 247 (482)
.|++ ..+.+.+. .+.+ +.+|++-. ..+. ..+++++|+.
T Consensus 125 -------~~g~------------------~nr~~~~~------a~~v-~~~f~~~~----~~~~------~~k~~~tG~P 162 (352)
T PRK12446 125 -------TPGL------------------ANKIALRF------ASKI-FVTFEEAA----KHLP------KEKVIYTGSP 162 (352)
T ss_pred -------CccH------------------HHHHHHHh------hCEE-EEEccchh----hhCC------CCCeEEECCc
Confidence 1221 01111111 1112 22332211 1111 1368899977
Q ss_pred cCCCCCCccccccccccccCCCCCcEEEEeccCCCCCCH-HHHHHHHHHHHhcCCceEEEEeCCCCCCCCcccccCCCCC
Q 045267 248 VKTGSTAESKNEGCLKWLDDQPLGSVLFVSFGSGGTLSC-EQLNELALGLEMSEQRFLWVVRSPNNAANSTFFSVNSHKD 326 (482)
Q Consensus 248 ~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 326 (482)
+.+...... .+...+.+.-.+++++|+|..||...... +.+..++..+. .+.+++|+.+.+..
T Consensus 163 vr~~~~~~~-~~~~~~~~~l~~~~~~iLv~GGS~Ga~~in~~~~~~l~~l~-~~~~vv~~~G~~~~-------------- 226 (352)
T PRK12446 163 VREEVLKGN-REKGLAFLGFSRKKPVITIMGGSLGAKKINETVREALPELL-LKYQIVHLCGKGNL-------------- 226 (352)
T ss_pred CCccccccc-chHHHHhcCCCCCCcEEEEECCccchHHHHHHHHHHHHhhc-cCcEEEEEeCCchH--------------
Confidence 655432111 11111122223456799999999865443 22334444442 24678888775321
Q ss_pred CCCCCchhHHhhhcCCCeeecccc-c-hhhhhhcccccccccccCchhHHHHhhcCCcEeecccc-----ccchhhHHHH
Q 045267 327 PYDFLPKGFLDRTKGRGMLVPSWA-P-QAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAWPLY-----AEQKMNAVIL 399 (482)
Q Consensus 327 ~~~~lp~~~~~~~~~~~v~~~~~i-p-q~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~-----~DQ~~na~rv 399 (482)
+..... ..++.+..|+ + ..+++..+| ++|||||.+|+.|++++|+|+|++|+. .||..||..+
T Consensus 227 ------~~~~~~--~~~~~~~~f~~~~m~~~~~~ad--lvIsr~G~~t~~E~~~~g~P~I~iP~~~~~~~~~Q~~Na~~l 296 (352)
T PRK12446 227 ------DDSLQN--KEGYRQFEYVHGELPDILAITD--FVISRAGSNAIFEFLTLQKPMLLIPLSKFASRGDQILNAESF 296 (352)
T ss_pred ------HHHHhh--cCCcEEecchhhhHHHHHHhCC--EEEECCChhHHHHHHHcCCCEEEEcCCCCCCCchHHHHHHHH
Confidence 111111 1244556777 4 567999999 999999999999999999999999984 5899999999
Q ss_pred HhhcceeeeeccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHH
Q 045267 400 TEDVKLALRPKANENGIVGRDEIAKVVKALMEGEQGKEVRNKMKD 444 (482)
Q Consensus 400 ~~~~G~G~~l~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~ 444 (482)
++ .|+|..+..++ ++++.|.+++.+++.|+ +.+++++++
T Consensus 297 ~~-~g~~~~l~~~~---~~~~~l~~~l~~ll~~~--~~~~~~~~~ 335 (352)
T PRK12446 297 ER-QGYASVLYEED---VTVNSLIKHVEELSHNN--EKYKTALKK 335 (352)
T ss_pred HH-CCCEEEcchhc---CCHHHHHHHHHHHHcCH--HHHHHHHHH
Confidence 99 99999998887 99999999999999875 245544433
No 29
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=99.93 E-value=1.1e-23 Score=206.89 Aligned_cols=308 Identities=18% Similarity=0.210 Sum_probs=190.1
Q ss_pred CEEEEEcCC-CCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCCchhhhhhhhcCCCceeEEEec-CCCCCCCcchhhHHH
Q 045267 11 PHIVLLPSP-GMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPPSEAQKSTLESLPSSINSVFLP-VSLNDVAEDARAETV 88 (482)
Q Consensus 11 ~~ili~~~~-~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~ 88 (482)
|||+|...+ +.||+.+.++||++| | ||+|+|++.....+ ... + .+....++ ..........+....
T Consensus 1 MkIl~~v~~~G~GH~~R~~~la~~L--r-g~~v~~~~~~~~~~------~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~ 68 (318)
T PF13528_consen 1 MKILFYVQGHGLGHASRCLALARAL--R-GHEVTFITSGPAPE------FLK--P-RFPVREIPGLGPIQENGRLDRWKT 68 (318)
T ss_pred CEEEEEeCCCCcCHHHHHHHHHHHH--c-cCceEEEEcCCcHH------Hhc--c-ccCEEEccCceEeccCCccchHHH
Confidence 678888887 559999999999999 6 99999999774221 111 1 13444444 322221112222222
Q ss_pred HHHHH--HhhhHHHHHHHHHHhhCCCccEEEeCCCCccHHHHHHHcCCccEEEccchHHHHHHHhhhhhhhccCCCCCcc
Q 045267 89 ISLTV--LRSLPCLRQELTSLVAKATVAALVVDLFGTDAFDVAQEFNISPYIFYPSTAMCLSLFLHLEKLDQMVPRDCEY 166 (482)
Q Consensus 89 ~~~~~--~~~~~~l~~~l~~~~~~~~pD~vi~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (482)
+.... ..........+.+++++.+||+||+|. .+.+..+|+..|||++.+........
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~l~~~~pDlVIsD~-~~~~~~aa~~~giP~i~i~~~~~~~~------------------- 128 (318)
T PF13528_consen 69 VRNNIRWLARLARRIRREIRWLREFRPDLVISDF-YPLAALAARRAGIPVIVISNQYWFLH------------------- 128 (318)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEcC-hHHHHHHHHhcCCCEEEEEehHHccc-------------------
Confidence 22111 111122222334556778999999996 44467889999999988766543320
Q ss_pred cCCCCcccCCCCCccccCCCCcccccccchHHHHHHHHHhhcccccEEEEcCccccchhHHHHhhhcCCCCCCCeEeecc
Q 045267 167 RDMSEPVQIPGCIPVHGGYLLDPVQDRKNEAYRWVLHHAKRYKLAEGIIVNSFTDLEGGALKALQHQDEPGKPPVYPVGP 246 (482)
Q Consensus 167 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~p~~p~~~~vGp 246 (482)
+.+ .++.. +........+.... .+..+...+.-++. ... +...+..++||
T Consensus 129 ---------~~~------~~~~~--~~~~~~~~~~~~~~-~~~~~~~~l~~~~~-~~~-----------~~~~~~~~~~p 178 (318)
T PF13528_consen 129 ---------PNF------WLPWD--QDFGRLIERYIDRY-HFPPADRRLALSFY-PPL-----------PPFFRVPFVGP 178 (318)
T ss_pred ---------ccC------Ccchh--hhHHHHHHHhhhhc-cCCcccceecCCcc-ccc-----------cccccccccCc
Confidence 010 00000 00011111111111 12222222333332 111 01225677888
Q ss_pred CcCCCCCCccccccccccccCCCCCcEEEEeccCCCCCCHHHHHHHHHHHHhcC-CceEEEEeCCCCCCCCcccccCCCC
Q 045267 247 LVKTGSTAESKNEGCLKWLDDQPLGSVLFVSFGSGGTLSCEQLNELALGLEMSE-QRFLWVVRSPNNAANSTFFSVNSHK 325 (482)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~ 325 (482)
+..+...... . .+++.|+|++|..... .++++++..+ ..+++. +....
T Consensus 179 ~~~~~~~~~~---------~--~~~~~iLv~~gg~~~~------~~~~~l~~~~~~~~~v~-g~~~~------------- 227 (318)
T PF13528_consen 179 IIRPEIRELP---------P--EDEPKILVYFGGGGPG------DLIEALKALPDYQFIVF-GPNAA------------- 227 (318)
T ss_pred hhcccccccC---------C--CCCCEEEEEeCCCcHH------HHHHHHHhCCCCeEEEE-cCCcc-------------
Confidence 8765432111 1 1345899999975432 6677777777 455544 43321
Q ss_pred CCCCCCchhHHhhhcCCCeeecccc--chhhhhhcccccccccccCchhHHHHhhcCCcEeeccc--cccchhhHHHHHh
Q 045267 326 DPYDFLPKGFLDRTKGRGMLVPSWA--PQAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAWPL--YAEQKMNAVILTE 401 (482)
Q Consensus 326 ~~~~~lp~~~~~~~~~~~v~~~~~i--pq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~--~~DQ~~na~rv~~ 401 (482)
+....|+.+..|. ...++|..|+ ++|+|||+||++|++++|+|+|++|. ..+|..||+++++
T Consensus 228 ------------~~~~~ni~~~~~~~~~~~~~m~~ad--~vIs~~G~~t~~Ea~~~g~P~l~ip~~~~~EQ~~~a~~l~~ 293 (318)
T PF13528_consen 228 ------------DPRPGNIHVRPFSTPDFAELMAAAD--LVISKGGYTTISEALALGKPALVIPRPGQDEQEYNARKLEE 293 (318)
T ss_pred ------------cccCCCEEEeecChHHHHHHHHhCC--EEEECCCHHHHHHHHHcCCCEEEEeCCCCchHHHHHHHHHH
Confidence 0123588888876 3677999999 99999999999999999999999999 6799999999999
Q ss_pred hcceeeeeccCCCCccCHHHHHHHHHHH
Q 045267 402 DVKLALRPKANENGIVGRDEIAKVVKAL 429 (482)
Q Consensus 402 ~~G~G~~l~~~~~~~~~~~~l~~ai~~v 429 (482)
.|+|..++.++ ++++.|+++|+++
T Consensus 294 -~G~~~~~~~~~---~~~~~l~~~l~~~ 317 (318)
T PF13528_consen 294 -LGLGIVLSQED---LTPERLAEFLERL 317 (318)
T ss_pred -CCCeEEccccc---CCHHHHHHHHhcC
Confidence 99999999888 9999999999764
No 30
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=99.90 E-value=4.6e-21 Score=187.46 Aligned_cols=315 Identities=18% Similarity=0.187 Sum_probs=191.4
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHhcCCC-EEEEEcCCCCCCchhhhhhhhcCCCceeEEEecCCCCCCCcchhhHHHH
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRLVHRHHF-LVTFFIPSDGPPSEAQKSTLESLPSSINSVFLPVSLNDVAEDARAETVI 89 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L~~r~GH-~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 89 (482)
++|++...++.||+.|.++|+++|.++ |+ +|.+..+....+. .+.. ..++.++.++...-............
T Consensus 1 ~~ivl~~gGTGGHv~pAlAl~~~l~~~-g~~~v~~~~~~~~~e~----~l~~--~~~~~~~~I~~~~~~~~~~~~~~~~~ 73 (357)
T COG0707 1 KKIVLTAGGTGGHVFPALALAEELAKR-GWEQVIVLGTGDGLEA----FLVK--QYGIEFELIPSGGLRRKGSLKLLKAP 73 (357)
T ss_pred CeEEEEeCCCccchhHHHHHHHHHHhh-CccEEEEeccccccee----eecc--ccCceEEEEecccccccCcHHHHHHH
Confidence 468999999999999999999999998 99 5888765543331 1111 11567777772211111111111111
Q ss_pred HHHHHhhhHHHHHHHHHHhhCCCccEEEeCCCCcc--HHHHHHHcCCccEEEccchHHHHHHHhhhhhhhccCCCCCccc
Q 045267 90 SLTVLRSLPCLRQELTSLVAKATVAALVVDLFGTD--AFDVAQEFNISPYIFYPSTAMCLSLFLHLEKLDQMVPRDCEYR 167 (482)
Q Consensus 90 ~~~~~~~~~~l~~~l~~~~~~~~pD~vi~D~~~~~--~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (482)
.. .......... ++++.+||+||.-.-++. +..+|..+|||+++. +...
T Consensus 74 ~~-~~~~~~~a~~----il~~~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~ih------------------Eqn~------ 124 (357)
T COG0707 74 FK-LLKGVLQARK----ILKKLKPDVVIGTGGYVSGPVGIAAKLLGIPVIIH------------------EQNA------ 124 (357)
T ss_pred HH-HHHHHHHHHH----HHHHcCCCEEEecCCccccHHHHHHHhCCCCEEEE------------------ecCC------
Confidence 11 1122223333 344569999998654444 457888999997762 1111
Q ss_pred CCCCcccCCCCCccccCCCCcccccccchHHHHHHHHHhhcccccEEEEcCccccchhHHHHhhhcCCCCCCCeEeeccC
Q 045267 168 DMSEPVQIPGCIPVHGGYLLDPVQDRKNEAYRWVLHHAKRYKLAEGIIVNSFTDLEGGALKALQHQDEPGKPPVYPVGPL 247 (482)
Q Consensus 168 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~p~~p~~~~vGp~ 247 (482)
.||.. ++...+.. + .+..+|.+.+.. ....+.+.+|-.
T Consensus 125 -------~~G~a------------------nk~~~~~a------~-~V~~~f~~~~~~----------~~~~~~~~tG~P 162 (357)
T COG0707 125 -------VPGLA------------------NKILSKFA------K-KVASAFPKLEAG----------VKPENVVVTGIP 162 (357)
T ss_pred -------Ccchh------------------HHHhHHhh------c-eeeecccccccc----------CCCCceEEecCc
Confidence 23321 11111111 1 122233321110 011258888844
Q ss_pred cCCCCCCccccccccccccCCCCCcEEEEeccCCCCCCH-HHHHHHHHHHHhcCCceEEEEeCCCCCCCCcccccCCCCC
Q 045267 248 VKTGSTAESKNEGCLKWLDDQPLGSVLFVSFGSGGTLSC-EQLNELALGLEMSEQRFLWVVRSPNNAANSTFFSVNSHKD 326 (482)
Q Consensus 248 ~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~-~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 326 (482)
+..+-.. .+..-.... ...++++|+|..||.....- +.+..++..+.. +..+++..+.+.
T Consensus 163 vr~~~~~--~~~~~~~~~-~~~~~~~ilV~GGS~Ga~~ln~~v~~~~~~l~~-~~~v~~~~G~~~--------------- 223 (357)
T COG0707 163 VRPEFEE--LPAAEVRKD-GRLDKKTILVTGGSQGAKALNDLVPEALAKLAN-RIQVIHQTGKND--------------- 223 (357)
T ss_pred ccHHhhc--cchhhhhhh-ccCCCcEEEEECCcchhHHHHHHHHHHHHHhhh-CeEEEEEcCcch---------------
Confidence 3332211 111111111 11156799999999754332 222223333332 356666665532
Q ss_pred CCCCCchhHHhhhcCCC-eeeccccc-hhhhhhcccccccccccCchhHHHHhhcCCcEeeccc-c---ccchhhHHHHH
Q 045267 327 PYDFLPKGFLDRTKGRG-MLVPSWAP-QAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAWPL-Y---AEQKMNAVILT 400 (482)
Q Consensus 327 ~~~~lp~~~~~~~~~~~-v~~~~~ip-q~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~-~---~DQ~~na~rv~ 400 (482)
.+.........+ +.+..|+. ...++..+| ++||++|++|+.|++++|+|+|.+|+ . .||..||..++
T Consensus 224 -----~~~~~~~~~~~~~~~v~~f~~dm~~~~~~AD--LvIsRaGa~Ti~E~~a~g~P~IliP~p~~~~~~Q~~NA~~l~ 296 (357)
T COG0707 224 -----LEELKSAYNELGVVRVLPFIDDMAALLAAAD--LVISRAGALTIAELLALGVPAILVPYPPGADGHQEYNAKFLE 296 (357)
T ss_pred -----HHHHHHHHhhcCcEEEeeHHhhHHHHHHhcc--EEEeCCcccHHHHHHHhCCCEEEeCCCCCccchHHHHHHHHH
Confidence 133444444344 77888888 467899999 99999999999999999999999997 2 48999999999
Q ss_pred hhcceeeeeccCCCCccCHHHHHHHHHHHhcCC
Q 045267 401 EDVKLALRPKANENGIVGRDEIAKVVKALMEGE 433 (482)
Q Consensus 401 ~~~G~G~~l~~~~~~~~~~~~l~~ai~~vl~~~ 433 (482)
+ .|.|..++..+ +|++.|.+.|.+++.++
T Consensus 297 ~-~gaa~~i~~~~---lt~~~l~~~i~~l~~~~ 325 (357)
T COG0707 297 K-AGAALVIRQSE---LTPEKLAELILRLLSNP 325 (357)
T ss_pred h-CCCEEEecccc---CCHHHHHHHHHHHhcCH
Confidence 9 99999999998 99999999999999874
No 31
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=99.89 E-value=3.1e-21 Score=189.33 Aligned_cols=306 Identities=14% Similarity=0.122 Sum_probs=170.6
Q ss_pred EEEEEcCCCC-CChHHHHHHHHHHHhcCCCEEEEEcCCCCCCchhhhhhhhcCCCcee-EEEec-CCCCCCCcchhhHHH
Q 045267 12 HIVLLPSPGM-GHLIPLIEFAKRLVHRHHFLVTFFIPSDGPPSEAQKSTLESLPSSIN-SVFLP-VSLNDVAEDARAETV 88 (482)
Q Consensus 12 ~ili~~~~~~-GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~-~~~~~~~~~~~~~~~ 88 (482)
||++...++. ||+.|.++|+++|. + ||+|+|++..... .+.. ..++. +...| ..........+....
T Consensus 1 ril~~~~g~G~GH~~r~~ala~~L~-~-g~ev~~~~~~~~~------~~~~--~~~~~~~~~~p~~~~~~~~~~~~~~~~ 70 (321)
T TIGR00661 1 KILYSVCGEGFGHTTRSVAIGEALK-N-DYEVSYIASGRSK------NYIS--KYGFKVFETFPGIKLKGEDGKVNIVKT 70 (321)
T ss_pred CEEEEEeccCccHHHHHHHHHHHHh-C-CCeEEEEEcCCHH------Hhhh--hhcCcceeccCCceEeecCCcCcHHHH
Confidence 4777777666 99999999999995 5 9999999866411 1111 11222 22222 111111111111111
Q ss_pred HHHHHHhhhHHHHHHHHHHhhCCCccEEEeCCCCccHHHHHHHcCCccEEEccchHHHHHHHhhhhhhhccCCCCCcccC
Q 045267 89 ISLTVLRSLPCLRQELTSLVAKATVAALVVDLFGTDAFDVAQEFNISPYIFYPSTAMCLSLFLHLEKLDQMVPRDCEYRD 168 (482)
Q Consensus 89 ~~~~~~~~~~~l~~~l~~~~~~~~pD~vi~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (482)
+..........+.+. .+++++.+||+||+|. .+.+..+|+.+|||++.+..+....
T Consensus 71 l~~~~~~~~~~~~~~-~~~l~~~~pDlVi~d~-~~~~~~aA~~~~iP~i~i~~q~~~~---------------------- 126 (321)
T TIGR00661 71 LRNKEYSPKKAIRRE-INIIREYNPDLIISDF-EYSTVVAAKLLKIPVICISNQNYTR---------------------- 126 (321)
T ss_pred HHhhccccHHHHHHH-HHHHHhcCCCEEEECC-chHHHHHHHhcCCCEEEEecchhhc----------------------
Confidence 211000001223232 3455677999999994 6667889999999999766532110
Q ss_pred CCCcccCCCCCccccCCCCcccccccchHHHHHHHHHhhcccccEEEEcCccccchhHHHHhhhcCCCCCCCeE--eecc
Q 045267 169 MSEPVQIPGCIPVHGGYLLDPVQDRKNEAYRWVLHHAKRYKLAEGIIVNSFTDLEGGALKALQHQDEPGKPPVY--PVGP 246 (482)
Q Consensus 169 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~p~~p~~~--~vGp 246 (482)
.|+.. +......+.....+ ......+....+..... ..|... .-+|
T Consensus 127 ------~~~~~------------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~------------~~p~~~~~~~~~ 174 (321)
T TIGR00661 127 ------YPLKT------------DLIVYPTMAALRIF--NERCERFIVPDYPFPYT------------ICPKIIKNMEGP 174 (321)
T ss_pred ------CCccc------------chhHHHHHHHHHHh--ccccceEeeecCCCCCC------------CCccccccCCCc
Confidence 11110 00000011111111 11222222222221110 111110 0011
Q ss_pred CcCCCCCCccccccccccccCCCCCcEEEEeccCCCCCCHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCcccccCCCCC
Q 045267 247 LVKTGSTAESKNEGCLKWLDDQPLGSVLFVSFGSGGTLSCEQLNELALGLEMSEQRFLWVVRSPNNAANSTFFSVNSHKD 326 (482)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 326 (482)
... ....+|... .++.|+|.+|+.. ...++++++..+. +.+++.....
T Consensus 175 ~~~---------~~~~~~~~~--~~~~iLv~~g~~~------~~~l~~~l~~~~~-~~~i~~~~~~-------------- 222 (321)
T TIGR00661 175 LIR---------YDVDDVDNY--GEDYILVYIGFEY------RYKILELLGKIAN-VKFVCYSYEV-------------- 222 (321)
T ss_pred ccc---------hhhhccccC--CCCcEEEECCcCC------HHHHHHHHHhCCC-eEEEEeCCCC--------------
Confidence 111 111122222 2347777777732 2455677777664 2233222111
Q ss_pred CCCCCchhHHhhhcCCCeeeccccc--hhhhhhcccccccccccCchhHHHHhhcCCcEeeccccc--cchhhHHHHHhh
Q 045267 327 PYDFLPKGFLDRTKGRGMLVPSWAP--QAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAWPLYA--EQKMNAVILTED 402 (482)
Q Consensus 327 ~~~~lp~~~~~~~~~~~v~~~~~ip--q~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~--DQ~~na~rv~~~ 402 (482)
....+ +.|+.+.+|.| ..+.|+.++ ++|||||++|++||+++|+|++++|..+ ||..||+.+++
T Consensus 223 ~~~~~---------~~~v~~~~~~~~~~~~~l~~ad--~vI~~~G~~t~~Ea~~~g~P~l~ip~~~~~eQ~~na~~l~~- 290 (321)
T TIGR00661 223 AKNSY---------NENVEIRRITTDNFKELIKNAE--LVITHGGFSLISEALSLGKPLIVIPDLGQFEQGNNAVKLED- 290 (321)
T ss_pred Ccccc---------CCCEEEEECChHHHHHHHHhCC--EEEECCChHHHHHHHHcCCCEEEEcCCCcccHHHHHHHHHH-
Confidence 01112 24788889997 567788999 9999999999999999999999999855 89999999999
Q ss_pred cceeeeeccCCCCccCHHHHHHHHHHHhcCC
Q 045267 403 VKLALRPKANENGIVGRDEIAKVVKALMEGE 433 (482)
Q Consensus 403 ~G~G~~l~~~~~~~~~~~~l~~ai~~vl~~~ 433 (482)
.|+|+.++..+ + ++.+++.++++|+
T Consensus 291 ~g~~~~l~~~~---~---~~~~~~~~~~~~~ 315 (321)
T TIGR00661 291 LGCGIALEYKE---L---RLLEAILDIRNMK 315 (321)
T ss_pred CCCEEEcChhh---H---HHHHHHHhccccc
Confidence 99999998776 5 6666776777776
No 32
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=99.84 E-value=3.3e-18 Score=170.77 Aligned_cols=343 Identities=17% Similarity=0.159 Sum_probs=202.5
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCCchhhhhhhhcCCCceeEEEec-CCCCCCCcchhhHHHH
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPPSEAQKSTLESLPSSINSVFLP-VSLNDVAEDARAETVI 89 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~ 89 (482)
|||+|++.+..||...++.|+++|.++ ||+|++++.+.... ..... ..++++..++ ....+.. ........
T Consensus 2 ~~i~i~~~g~gG~~~~~~~la~~L~~~-g~ev~vv~~~~~~~----~~~~~--~~g~~~~~~~~~~~~~~~-~~~~l~~~ 73 (357)
T PRK00726 2 KKILLAGGGTGGHVFPALALAEELKKR-GWEVLYLGTARGME----ARLVP--KAGIEFHFIPSGGLRRKG-SLANLKAP 73 (357)
T ss_pred cEEEEEcCcchHhhhHHHHHHHHHHhC-CCEEEEEECCCchh----hhccc--cCCCcEEEEeccCcCCCC-hHHHHHHH
Confidence 679999998999999999999999988 99999998754111 11111 1256776666 2211111 11111111
Q ss_pred HHHHHhhhHHHHHHHHHHhhCCCccEEEeCCCC--ccHHHHHHHcCCccEEEccchHHHHHHHhhhhhhhccCCCCCccc
Q 045267 90 SLTVLRSLPCLRQELTSLVAKATVAALVVDLFG--TDAFDVAQEFNISPYIFYPSTAMCLSLFLHLEKLDQMVPRDCEYR 167 (482)
Q Consensus 90 ~~~~~~~~~~l~~~l~~~~~~~~pD~vi~D~~~--~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (482)
... ...... +.+++++.+||+|++.... +.+..+++..++|++......
T Consensus 74 ~~~-~~~~~~----~~~~ik~~~pDvv~~~~~~~~~~~~~~~~~~~~p~v~~~~~~------------------------ 124 (357)
T PRK00726 74 FKL-LKGVLQ----ARKILKRFKPDVVVGFGGYVSGPGGLAARLLGIPLVIHEQNA------------------------ 124 (357)
T ss_pred HHH-HHHHHH----HHHHHHhcCCCEEEECCCcchhHHHHHHHHcCCCEEEEcCCC------------------------
Confidence 111 111222 2334456699999998632 234466777899977421100
Q ss_pred CCCCcccCCCCCccccCCCCcccccccchHHHHHHHHHhhcccccEEEEcCccccchhHHHHhhhcCCCCCCCeEeeccC
Q 045267 168 DMSEPVQIPGCIPVHGGYLLDPVQDRKNEAYRWVLHHAKRYKLAEGIIVNSFTDLEGGALKALQHQDEPGKPPVYPVGPL 247 (482)
Q Consensus 168 ~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~p~~p~~~~vGp~ 247 (482)
.++ + ..+.+.+ .++.++..+-..+ .. . ...+++++|+.
T Consensus 125 -------~~~---------------~---~~r~~~~------~~d~ii~~~~~~~-------~~---~-~~~~i~vi~n~ 162 (357)
T PRK00726 125 -------VPG---------------L---ANKLLAR------FAKKVATAFPGAF-------PE---F-FKPKAVVTGNP 162 (357)
T ss_pred -------Ccc---------------H---HHHHHHH------HhchheECchhhh-------hc---c-CCCCEEEECCC
Confidence 010 0 0011111 1122222211110 00 0 22478888866
Q ss_pred cCCCCCCccccccccccccCCCCCcEEEEeccCCCCCCHHHHHH-HHHHHHhcCC--ceEEEEeCCCCCCCCcccccCCC
Q 045267 248 VKTGSTAESKNEGCLKWLDDQPLGSVLFVSFGSGGTLSCEQLNE-LALGLEMSEQ--RFLWVVRSPNNAANSTFFSVNSH 324 (482)
Q Consensus 248 ~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~-~~~al~~~~~--~~i~~~~~~~~~~~~~~~~~~~~ 324 (482)
+....... +..-..+ ...++.++|++..|+. ....... +.++++.+.. .+++..+.+..
T Consensus 163 v~~~~~~~--~~~~~~~-~~~~~~~~i~~~gg~~---~~~~~~~~l~~a~~~~~~~~~~~~~~G~g~~------------ 224 (357)
T PRK00726 163 VREEILAL--AAPPARL-AGREGKPTLLVVGGSQ---GARVLNEAVPEALALLPEALQVIHQTGKGDL------------ 224 (357)
T ss_pred CChHhhcc--cchhhhc-cCCCCCeEEEEECCcH---hHHHHHHHHHHHHHHhhhCcEEEEEcCCCcH------------
Confidence 54322111 1100111 1112344676665552 2222333 3366665543 33444444311
Q ss_pred CCCCCCCchhHHhhhc-CCCeeeccccc-hhhhhhcccccccccccCchhHHHHhhcCCcEeeccc----cccchhhHHH
Q 045267 325 KDPYDFLPKGFLDRTK-GRGMLVPSWAP-QAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAWPL----YAEQKMNAVI 398 (482)
Q Consensus 325 ~~~~~~lp~~~~~~~~-~~~v~~~~~ip-q~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~----~~DQ~~na~r 398 (482)
+.+.+... +-++.+.+|+. ..++++.++ ++|+|+|.+++.||+++|+|+|++|. .+||..|+..
T Consensus 225 --------~~~~~~~~~~~~v~~~g~~~~~~~~~~~~d--~~i~~~g~~~~~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~~ 294 (357)
T PRK00726 225 --------EEVRAAYAAGINAEVVPFIDDMAAAYAAAD--LVICRAGASTVAELAAAGLPAILVPLPHAADDHQTANARA 294 (357)
T ss_pred --------HHHHHHhhcCCcEEEeehHhhHHHHHHhCC--EEEECCCHHHHHHHHHhCCCEEEecCCCCCcCcHHHHHHH
Confidence 23332332 22377889984 578999999 99999999999999999999999997 3689999999
Q ss_pred HHhhcceeeeeccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHh
Q 045267 399 LTEDVKLALRPKANENGIVGRDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKWN 471 (482)
Q Consensus 399 v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~ 471 (482)
+.+ .|.|..++.++ ++++.|++++.+++.|+ +.+++..+-+.+.. +.++..+.++.+.+.++
T Consensus 295 i~~-~~~g~~~~~~~---~~~~~l~~~i~~ll~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 356 (357)
T PRK00726 295 LVD-AGAALLIPQSD---LTPEKLAEKLLELLSDP---ERLEAMAEAARALG----KPDAAERLADLIEELAR 356 (357)
T ss_pred HHH-CCCEEEEEccc---CCHHHHHHHHHHHHcCH---HHHHHHHHHHHhcC----CcCHHHHHHHHHHHHhh
Confidence 999 99999998877 89999999999999986 66655555444443 46777777777776654
No 33
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=99.78 E-value=1.6e-16 Score=158.18 Aligned_cols=312 Identities=18% Similarity=0.138 Sum_probs=181.4
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCCchhhhhhhhcCCCceeEEEecC-CCCCCCcchhhHHHHH
Q 045267 12 HIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPPSEAQKSTLESLPSSINSVFLPV-SLNDVAEDARAETVIS 90 (482)
Q Consensus 12 ~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~ 90 (482)
+|+|.+.++.||+...+.|++.|.++ ||+|++++....... .... ..++++..++. ...... .........
T Consensus 1 ~~~~~~~~~gG~~~~~~~la~~l~~~-G~ev~v~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 72 (350)
T cd03785 1 RILIAGGGTGGHIFPALALAEELRER-GAEVLFLGTKRGLEA----RLVP--KAGIPLHTIPVGGLRRKG-SLKKLKAPF 72 (350)
T ss_pred CEEEEecCchhhhhHHHHHHHHHHhC-CCEEEEEECCCcchh----hccc--ccCCceEEEEecCcCCCC-hHHHHHHHH
Confidence 48999999999999999999999888 999999987532110 0011 12466666662 221111 111111111
Q ss_pred HHHHhhhHHHHHHHHHHhhCCCccEEEeCCCC--ccHHHHHHHcCCccEEEccchHHHHHHHhhhhhhhccCCCCCcccC
Q 045267 91 LTVLRSLPCLRQELTSLVAKATVAALVVDLFG--TDAFDVAQEFNISPYIFYPSTAMCLSLFLHLEKLDQMVPRDCEYRD 168 (482)
Q Consensus 91 ~~~~~~~~~l~~~l~~~~~~~~pD~vi~D~~~--~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (482)
.. ...... +.+++++.+||+|+++... ..+..+|...++|++..... .
T Consensus 73 ~~-~~~~~~----~~~~i~~~~pDvI~~~~~~~~~~~~~~a~~~~~p~v~~~~~------------------~------- 122 (350)
T cd03785 73 KL-LKGVLQ----ARKILKKFKPDVVVGFGGYVSGPVGLAAKLLGIPLVIHEQN------------------A------- 122 (350)
T ss_pred HH-HHHHHH----HHHHHHhcCCCEEEECCCCcchHHHHHHHHhCCCEEEEcCC------------------C-------
Confidence 11 111122 3344456699999987533 33456788889997742110 0
Q ss_pred CCCcccCCCCCccccCCCCcccccccchHHHHHHHHHhhcccccEEEEcCccccchhHHHHhhhcCCCCCCCeEeeccCc
Q 045267 169 MSEPVQIPGCIPVHGGYLLDPVQDRKNEAYRWVLHHAKRYKLAEGIIVNSFTDLEGGALKALQHQDEPGKPPVYPVGPLV 248 (482)
Q Consensus 169 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~p~~p~~~~vGp~~ 248 (482)
.++ ...++. .+.++.++..+-...+. + ...++.++|...
T Consensus 123 ------~~~-------------------~~~~~~-----~~~~~~vi~~s~~~~~~-----~------~~~~~~~i~n~v 161 (350)
T cd03785 123 ------VPG-------------------LANRLL-----ARFADRVALSFPETAKY-----F------PKDKAVVTGNPV 161 (350)
T ss_pred ------Ccc-------------------HHHHHH-----HHhhCEEEEcchhhhhc-----C------CCCcEEEECCCC
Confidence 011 011110 11233444433222111 0 113677787654
Q ss_pred CCCCCCccccccccccccCCCCCcEEEEeccCCCCCCHHHHHHHHHHHHhc---CCceEEEEeCCCCCCCCcccccCCCC
Q 045267 249 KTGSTAESKNEGCLKWLDDQPLGSVLFVSFGSGGTLSCEQLNELALGLEMS---EQRFLWVVRSPNNAANSTFFSVNSHK 325 (482)
Q Consensus 249 ~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~ 325 (482)
...... ..+ . ...+...+++++|++..|+... ......++++++.+ +..+++..+.+..
T Consensus 162 ~~~~~~-~~~-~-~~~~~~~~~~~~i~~~~g~~~~--~~~~~~l~~a~~~l~~~~~~~~~i~G~g~~------------- 223 (350)
T cd03785 162 REEILA-LDR-E-RARLGLRPGKPTLLVFGGSQGA--RAINEAVPEALAELLRKRLQVIHQTGKGDL------------- 223 (350)
T ss_pred chHHhh-hhh-h-HHhcCCCCCCeEEEEECCcHhH--HHHHHHHHHHHHHhhccCeEEEEEcCCccH-------------
Confidence 322110 011 1 1122222334466666666432 11122233444443 2334445544211
Q ss_pred CCCCCCchhHHhhhc--CCCeeecccc-chhhhhhcccccccccccCchhHHHHhhcCCcEeeccc----cccchhhHHH
Q 045267 326 DPYDFLPKGFLDRTK--GRGMLVPSWA-PQAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAWPL----YAEQKMNAVI 398 (482)
Q Consensus 326 ~~~~~lp~~~~~~~~--~~~v~~~~~i-pq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~----~~DQ~~na~r 398 (482)
+.+.+... ..|+.+.+|+ ...++|..++ ++|+++|.+|+.||+++|+|+|++|. ..+|..|+..
T Consensus 224 -------~~l~~~~~~~~~~v~~~g~~~~~~~~l~~ad--~~v~~sg~~t~~Eam~~G~Pvv~~~~~~~~~~~~~~~~~~ 294 (350)
T cd03785 224 -------EEVKKAYEELGVNYEVFPFIDDMAAAYAAAD--LVISRAGASTVAELAALGLPAILIPLPYAADDHQTANARA 294 (350)
T ss_pred -------HHHHHHHhccCCCeEEeehhhhHHHHHHhcC--EEEECCCHhHHHHHHHhCCCEEEeecCCCCCCcHHHhHHH
Confidence 22222221 3689999998 4677999999 99999999999999999999999986 3578999999
Q ss_pred HHhhcceeeeeccCCCCccCHHHHHHHHHHHhcCC
Q 045267 399 LTEDVKLALRPKANENGIVGRDEIAKVVKALMEGE 433 (482)
Q Consensus 399 v~~~~G~G~~l~~~~~~~~~~~~l~~ai~~vl~~~ 433 (482)
+.+ .|.|..++..+ .++++|.+++.+++.|+
T Consensus 295 l~~-~g~g~~v~~~~---~~~~~l~~~i~~ll~~~ 325 (350)
T cd03785 295 LVK-AGAAVLIPQEE---LTPERLAAALLELLSDP 325 (350)
T ss_pred HHh-CCCEEEEecCC---CCHHHHHHHHHHHhcCH
Confidence 999 89999998766 78999999999999876
No 34
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=99.72 E-value=3.1e-16 Score=157.36 Aligned_cols=347 Identities=14% Similarity=0.078 Sum_probs=193.6
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCCchhhhhhhh-cCCCceeEEEecCCCCCCCcchhhHHHH
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPPSEAQKSTLE-SLPSSINSVFLPVSLNDVAEDARAETVI 89 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 89 (482)
.+|+|.+.++.||++|. +|+++|.++ |++|+|++.... .+.. ..+.++++..++ .-++. +....+
T Consensus 6 ~ki~i~aGgtsGhi~pa-al~~~l~~~-~~~~~~~g~gg~-------~m~~~g~~~~~~~~~l~--v~G~~---~~l~~~ 71 (385)
T TIGR00215 6 PTIALVAGEASGDILGA-GLRQQLKEH-YPNARFIGVAGP-------RMAAEGCEVLYSMEELS--VMGLR---EVLGRL 71 (385)
T ss_pred CeEEEEeCCccHHHHHH-HHHHHHHhc-CCCcEEEEEccH-------HHHhCcCccccChHHhh--hccHH---HHHHHH
Confidence 46999999999999999 999999887 999999985521 0110 111123333333 11211 111112
Q ss_pred HHHHHhhhHHHHHHHHHHhhCCCccEEEe-CCCCccHH--HHHHHcCCccEEEccchHHHHHHHhhhhhhhccCCCCCcc
Q 045267 90 SLTVLRSLPCLRQELTSLVAKATVAALVV-DLFGTDAF--DVAQEFNISPYIFYPSTAMCLSLFLHLEKLDQMVPRDCEY 166 (482)
Q Consensus 90 ~~~~~~~~~~l~~~l~~~~~~~~pD~vi~-D~~~~~~~--~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (482)
... -.....+.+++++.+||+||. |....... .+|+.+|||++.+.+ |-.. .
T Consensus 72 ~~~-----~~~~~~~~~~l~~~kPd~vi~~g~~~~~~~~a~aa~~~gip~v~~i~-P~~w-----------a-------- 126 (385)
T TIGR00215 72 GRL-----LKIRKEVVQLAKQAKPDLLVGIDAPDFNLTKELKKKDPGIKIIYYIS-PQVW-----------A-------- 126 (385)
T ss_pred HHH-----HHHHHHHHHHHHhcCCCEEEEeCCCCccHHHHHHHhhCCCCEEEEeC-CcHh-----------h--------
Confidence 111 112223445566779999995 53222222 388899999875432 1000 0
Q ss_pred cCCCCcccCCCCCccccCCCCcccccccchHHHHHHHHHhhcccccEEEEcCccccchhHHHHhhhcCCCCCCCeEeecc
Q 045267 167 RDMSEPVQIPGCIPVHGGYLLDPVQDRKNEAYRWVLHHAKRYKLAEGIIVNSFTDLEGGALKALQHQDEPGKPPVYPVGP 246 (482)
Q Consensus 167 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~~~~~~~~~p~~p~~~~vGp 246 (482)
+++ +..+.+.+..+ .++. ++ +.+... +... +. +..++|.
T Consensus 127 --------w~~------------------~~~r~l~~~~d------~v~~-~~-~~e~~~---~~~~---g~-~~~~vGn 165 (385)
T TIGR00215 127 --------WRK------------------WRAKKIEKATD------FLLA-IL-PFEKAF---YQKK---NV-PCRFVGH 165 (385)
T ss_pred --------cCc------------------chHHHHHHHHh------Hhhc-cC-CCcHHH---HHhc---CC-CEEEECC
Confidence 010 00111111111 1211 11 112211 1110 12 5667884
Q ss_pred CcCCCCCCc-cccccccccccCCCCCcEEEEeccCCCCCCHHHHHHHHHHHHhc-----CCceEEEEeCCCCCCCCcccc
Q 045267 247 LVKTGSTAE-SKNEGCLKWLDDQPLGSVLFVSFGSGGTLSCEQLNELALGLEMS-----EQRFLWVVRSPNNAANSTFFS 320 (482)
Q Consensus 247 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~~~~~~~ 320 (482)
-..+..... +...+..+-+.-.+++++|.+--||....-......++++++.+ +.++++.......
T Consensus 166 Pv~~~~~~~~~~~~~~r~~lgl~~~~~~Ilvl~GSR~aei~k~~~~ll~a~~~l~~~~p~~~~vi~~~~~~~-------- 237 (385)
T TIGR00215 166 PLLDAIPLYKPDRKSAREKLGIDHNGETLALLPGSRGSEVEKLFPLFLKAAQLLEQQEPDLRRVLPVVNFKR-------- 237 (385)
T ss_pred chhhhccccCCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHhHHHHHHHHHHHHHhCCCeEEEEEeCCchh--------
Confidence 433221100 11111111122223456888877875432223344566555443 2234443322111
Q ss_pred cCCCCCCCCCCchhHHh---hhc-CCCeeeccccchhhhhhcccccccccccCchhHHHHhhcCCcEeec----cccc--
Q 045267 321 VNSHKDPYDFLPKGFLD---RTK-GRGMLVPSWAPQAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAW----PLYA-- 390 (482)
Q Consensus 321 ~~~~~~~~~~lp~~~~~---~~~-~~~v~~~~~ipq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~----P~~~-- 390 (482)
.+.+.+ ... ...+....+ ....++..+| ++|+-.|..|+ |++++|+|+|++ |+..
T Consensus 238 -----------~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~aAD--l~V~~SGt~tl-Ea~a~G~P~Vv~yk~~pl~~~~ 302 (385)
T TIGR00215 238 -----------RLQFEQIKAEYGPDLQLHLIDG-DARKAMFAAD--AALLASGTAAL-EAALIKTPMVVGYRMKPLTFLI 302 (385)
T ss_pred -----------HHHHHHHHHHhCCCCcEEEECc-hHHHHHHhCC--EEeecCCHHHH-HHHHcCCCEEEEEcCCHHHHHH
Confidence 011211 111 112322222 3456899999 99999999988 999999999999 8632
Q ss_pred -------cchhhHHHHHhhcceeeeeccCCCCccCHHHHHHHHHHHhcCC----c-hHHHHHHHHHHHHHHHHHhhcCCc
Q 045267 391 -------EQKMNAVILTEDVKLALRPKANENGIVGRDEIAKVVKALMEGE----Q-GKEVRNKMKDLKDAAAAVLSENGS 458 (482)
Q Consensus 391 -------DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~vl~~~----~-~~~~r~~a~~l~~~~~~a~~~~g~ 458 (482)
+|..|+..+.. .++...+..++ .|++.|.+.+.++|.|+ + .+.+++..+++++.+. ++|.
T Consensus 303 ~~~~~~~~~~~~~nil~~-~~~~pel~q~~---~~~~~l~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~l~----~~~~ 374 (385)
T TIGR00215 303 ARRLVKTDYISLPNILAN-RLLVPELLQEE---CTPHPLAIALLLLLENGLKAYKEMHRERQFFEELRQRIY----CNAD 374 (385)
T ss_pred HHHHHcCCeeeccHHhcC-CccchhhcCCC---CCHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHhc----CCCH
Confidence 38889999999 99999988887 99999999999999986 4 3566666666666664 5788
Q ss_pred hHHHHHHHHH
Q 045267 459 STKALSQLAS 468 (482)
Q Consensus 459 ~~~~~~~~~~ 468 (482)
+.++.+.+.+
T Consensus 375 ~~~~a~~i~~ 384 (385)
T TIGR00215 375 SERAAQAVLE 384 (385)
T ss_pred HHHHHHHHhh
Confidence 8888877654
No 35
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=99.72 E-value=5.9e-15 Score=137.90 Aligned_cols=342 Identities=17% Similarity=0.165 Sum_probs=195.9
Q ss_pred hccCCEEEEEcCCCC--CChHHHHHHHHHHHhcC-CCEEEEEcCCCCCCchhhhhhhhcCCCceeEEEec--CCCC-CCC
Q 045267 7 AQAAPHIVLLPSPGM--GHLIPLIEFAKRLVHRH-HFLVTFFIPSDGPPSEAQKSTLESLPSSINSVFLP--VSLN-DVA 80 (482)
Q Consensus 7 ~~~~~~ili~~~~~~--GH~~P~l~La~~L~~r~-GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~-~~~ 80 (482)
+++++||+|++.-+. ||+..++.||++|++.. |.+|++++...... ....+.|++++.+| ...+ +..
T Consensus 6 ~~~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~Il~IsG~~~~~-------~F~~~~gVd~V~LPsl~k~~~G~~ 78 (400)
T COG4671 6 ASKRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFDILIISGGPPAG-------GFPGPAGVDFVKLPSLIKGDNGEY 78 (400)
T ss_pred hhccceEEEEehhhccchHHHHHHHHHHHHhhcccCceEEEEeCCCccC-------CCCCcccCceEecCceEecCCCce
Confidence 344569999999755 99999999999998742 89999999664322 11225689999999 2221 111
Q ss_pred cchhhHHHHHHHHHhhhHHHHHHHHHHhhCCCccEEEeCCCCccHHHHHHHcCCccEEEccchHHHHHHHhhhhhhhccC
Q 045267 81 EDARAETVISLTVLRSLPCLRQELTSLVAKATVAALVVDLFGTDAFDVAQEFNISPYIFYPSTAMCLSLFLHLEKLDQMV 160 (482)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pD~vi~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~ 160 (482)
...+.-..+.++.. .-.+.+....+..+||++|+|.+.++.. .++ .|.. .+... ..
T Consensus 79 ~~~d~~~~l~e~~~----~Rs~lil~t~~~fkPDi~IVd~~P~Glr---~EL-~ptL-----------~yl~~-----~~ 134 (400)
T COG4671 79 GLVDLDGDLEETKK----LRSQLILSTAETFKPDIFIVDKFPFGLR---FEL-LPTL-----------EYLKT-----TG 134 (400)
T ss_pred eeeecCCCHHHHHH----HHHHHHHHHHHhcCCCEEEEeccccchh---hhh-hHHH-----------HHHhh-----cC
Confidence 11111111222222 2223344445567999999999766421 111 1100 00000 00
Q ss_pred CCCCcccCCCCcccCCCCCccccCCCCcccccccchHHHHHHHHHhhcccccEEEE---cCccccchhHHHHhhhcCCCC
Q 045267 161 PRDCEYRDMSEPVQIPGCIPVHGGYLLDPVQDRKNEAYRWVLHHAKRYKLAEGIIV---NSFTDLEGGALKALQHQDEPG 237 (482)
Q Consensus 161 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~s~~~l~~~~~~~~~~~~~p~ 237 (482)
+ -.--.+++....|+..--. |.+ .... +..+ +..+.+++ +.|++++..+...-. .
T Consensus 135 t--~~vL~lr~i~D~p~~~~~~--------w~~-~~~~----~~I~--r~yD~V~v~GdP~f~d~~~~~~~~~~-----i 192 (400)
T COG4671 135 T--RLVLGLRSIRDIPQELEAD--------WRR-AETV----RLIN--RFYDLVLVYGDPDFYDPLTEFPFAPA-----I 192 (400)
T ss_pred C--cceeehHhhhhchhhhccc--------hhh-hHHH----HHHH--HhheEEEEecCccccChhhcCCccHh-----h
Confidence 0 0000000011111110000 000 0011 1111 11223333 344444433111000 1
Q ss_pred CCCeEeeccCcCCCCCCccccccccccccCCCCCcEEEEeccCCCCCCHHHHHHHHHHHHh-cCCceEEEEeCCCCCCCC
Q 045267 238 KPPVYPVGPLVKTGSTAESKNEGCLKWLDDQPLGSVLFVSFGSGGTLSCEQLNELALGLEM-SEQRFLWVVRSPNNAANS 316 (482)
Q Consensus 238 ~p~~~~vGp~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~-~~~~~i~~~~~~~~~~~~ 316 (482)
..++.|+|.+....+. .+.+ |... +++.-|+||-|- .....+++...+.|-.. .+.+-.|.+-.+.
T Consensus 193 ~~k~~ytG~vq~~~~~-~~~p-----~~~~-pE~~~Ilvs~GG-G~dG~eLi~~~l~A~~~l~~l~~~~~ivtGP----- 259 (400)
T COG4671 193 RAKMRYTGFVQRSLPH-LPLP-----PHEA-PEGFDILVSVGG-GADGAELIETALAAAQLLAGLNHKWLIVTGP----- 259 (400)
T ss_pred hhheeEeEEeeccCcC-CCCC-----CcCC-CccceEEEecCC-ChhhHHHHHHHHHHhhhCCCCCcceEEEeCC-----
Confidence 1278999988222111 1111 1111 444578888886 33455667777776654 3444234332221
Q ss_pred cccccCCCCCCCCCCchhHHhhh-----cCCCeeeccccch-hhhhhcccccccccccCchhHHHHhhcCCcEeecccc-
Q 045267 317 TFFSVNSHKDPYDFLPKGFLDRT-----KGRGMLVPSWAPQ-AQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAWPLY- 389 (482)
Q Consensus 317 ~~~~~~~~~~~~~~lp~~~~~~~-----~~~~v~~~~~ipq-~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~- 389 (482)
.+|+..+++. +.+++.+..|--+ ..++..++ .+|+-||+||++|-|.+|+|.+++|..
T Consensus 260 -------------~MP~~~r~~l~~~A~~~p~i~I~~f~~~~~~ll~gA~--~vVSm~GYNTvCeILs~~k~aLivPr~~ 324 (400)
T COG4671 260 -------------FMPEAQRQKLLASAPKRPHISIFEFRNDFESLLAGAR--LVVSMGGYNTVCEILSFGKPALIVPRAA 324 (400)
T ss_pred -------------CCCHHHHHHHHHhcccCCCeEEEEhhhhHHHHHHhhh--eeeecccchhhhHHHhCCCceEEeccCC
Confidence 2666555444 2478888888874 66888888 999999999999999999999999984
Q ss_pred --ccchhhHHHHHhhcceeeeeccCCCCccCHHHHHHHHHHHhcCC
Q 045267 390 --AEQKMNAVILTEDVKLALRPKANENGIVGRDEIAKVVKALMEGE 433 (482)
Q Consensus 390 --~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~vl~~~ 433 (482)
.+|-.-|.|+++ +|+.-.+-+++ +++..++++|...++.|
T Consensus 325 p~eEQliRA~Rl~~-LGL~dvL~pe~---lt~~~La~al~~~l~~P 366 (400)
T COG4671 325 PREEQLIRAQRLEE-LGLVDVLLPEN---LTPQNLADALKAALARP 366 (400)
T ss_pred CcHHHHHHHHHHHh-cCcceeeCccc---CChHHHHHHHHhcccCC
Confidence 489999999999 99999999998 99999999999999844
No 36
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=99.71 E-value=8e-15 Score=145.75 Aligned_cols=77 Identities=21% Similarity=0.260 Sum_probs=68.8
Q ss_pred chhhhhhcccccccccccCchhHHHHhhcCCcEeecccc---ccchhhHHHHHhhcceeeeeccCCCCccCHHHHHHHHH
Q 045267 351 PQAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAWPLY---AEQKMNAVILTEDVKLALRPKANENGIVGRDEIAKVVK 427 (482)
Q Consensus 351 pq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~---~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~ 427 (482)
...++|+.++ ++|+++|.+++.||+++|+|+|++|.. .+|..|+..+++ .|.|..++..+ .++++|.+++.
T Consensus 243 ~~~~~l~~ad--~~v~~~g~~~l~Ea~~~g~Pvv~~~~~~~~~~~~~~~~~i~~-~~~G~~~~~~~---~~~~~l~~~i~ 316 (348)
T TIGR01133 243 NMAAAYAAAD--LVISRAGASTVAELAAAGVPAILIPYPYAADDQYYNAKFLED-LGAGLVIRQKE---LLPEKLLEALL 316 (348)
T ss_pred CHHHHHHhCC--EEEECCChhHHHHHHHcCCCEEEeeCCCCccchhhHHHHHHH-CCCEEEEeccc---CCHHHHHHHHH
Confidence 4577899999 999999988999999999999999863 478889999999 89999988776 78999999999
Q ss_pred HHhcCC
Q 045267 428 ALMEGE 433 (482)
Q Consensus 428 ~vl~~~ 433 (482)
+++.|+
T Consensus 317 ~ll~~~ 322 (348)
T TIGR01133 317 KLLLDP 322 (348)
T ss_pred HHHcCH
Confidence 999886
No 37
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=99.66 E-value=8.6e-15 Score=147.41 Aligned_cols=173 Identities=18% Similarity=0.230 Sum_probs=114.9
Q ss_pred CCcEEEEeccCCCCCCHHHHHHHHHHHHhc-CCceEEEEeCCCCCCCCcccccCCCCCCCCCCchhHHhhh--cCCCeee
Q 045267 270 LGSVLFVSFGSGGTLSCEQLNELALGLEMS-EQRFLWVVRSPNNAANSTFFSVNSHKDPYDFLPKGFLDRT--KGRGMLV 346 (482)
Q Consensus 270 ~~~~v~vs~GS~~~~~~~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~--~~~~v~~ 346 (482)
+++++++..|+.... ..+..+++++... +.+++++.+.+.. +-+.+++.. .+.++.+
T Consensus 201 ~~~~il~~~G~~~~~--k~~~~li~~l~~~~~~~~viv~G~~~~------------------~~~~l~~~~~~~~~~v~~ 260 (380)
T PRK13609 201 NKKILLIMAGAHGVL--GNVKELCQSLMSVPDLQVVVVCGKNEA------------------LKQSLEDLQETNPDALKV 260 (380)
T ss_pred CCcEEEEEcCCCCCC--cCHHHHHHHHhhCCCcEEEEEeCCCHH------------------HHHHHHHHHhcCCCcEEE
Confidence 345777777876432 2355677777554 3455555443210 001222221 1257889
Q ss_pred ccccch-hhhhhcccccccccccCchhHHHHhhcCCcEeec-cccccchhhHHHHHhhcceeeeeccCCCCccCHHHHHH
Q 045267 347 PSWAPQ-AQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAW-PLYAEQKMNAVILTEDVKLALRPKANENGIVGRDEIAK 424 (482)
Q Consensus 347 ~~~ipq-~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~-P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ 424 (482)
.+|+++ .+++..+| ++|+.+|..|+.||+++|+|+|+. |..+.+..|+..+++ .|+|+.. -++++|.+
T Consensus 261 ~g~~~~~~~l~~~aD--~~v~~~gg~t~~EA~a~g~PvI~~~~~~g~~~~n~~~~~~-~G~~~~~-------~~~~~l~~ 330 (380)
T PRK13609 261 FGYVENIDELFRVTS--CMITKPGGITLSEAAALGVPVILYKPVPGQEKENAMYFER-KGAAVVI-------RDDEEVFA 330 (380)
T ss_pred EechhhHHHHHHhcc--EEEeCCCchHHHHHHHhCCCEEECCCCCCcchHHHHHHHh-CCcEEEE-------CCHHHHHH
Confidence 999986 57999999 999999988999999999999985 677788899999998 8998864 36799999
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhccCCCcc
Q 045267 425 VVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKWNNNEGKPCS 479 (482)
Q Consensus 425 ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~ 479 (482)
+|.++++|+ +.+++..+ ..++ .....+.++.++.+.+.+.....+.+|
T Consensus 331 ~i~~ll~~~---~~~~~m~~---~~~~-~~~~~s~~~i~~~i~~~~~~~~~~~~~ 378 (380)
T PRK13609 331 KTEALLQDD---MKLLQMKE---AMKS-LYLPEPADHIVDDILAENHVEPNLAQS 378 (380)
T ss_pred HHHHHHCCH---HHHHHHHH---HHHH-hCCCchHHHHHHHHHHhhhhhhhhHhh
Confidence 999999886 44333332 2222 113456667777776666554445544
No 38
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=99.64 E-value=1.9e-14 Score=144.93 Aligned_cols=108 Identities=12% Similarity=0.167 Sum_probs=72.8
Q ss_pred hhhhhhcccccccccccCchhHHHHhhcCCcEeeccccc--------cchhh-----HHHHHhhcceeeeeccCCCCccC
Q 045267 352 QAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAWPLYA--------EQKMN-----AVILTEDVKLALRPKANENGIVG 418 (482)
Q Consensus 352 q~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~--------DQ~~n-----a~rv~~~~G~G~~l~~~~~~~~~ 418 (482)
-..++..+| ++|+.+|.+++ ||+++|+|+|.+|-.. .|..| +..+.+ .+++..+...+ .+
T Consensus 255 ~~~~~~~aD--l~v~~sG~~~l-Ea~a~G~PvI~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~---~~ 327 (380)
T PRK00025 255 KREAMAAAD--AALAASGTVTL-ELALLKVPMVVGYKVSPLTFWIAKRLVKVPYVSLPNLLAG-RELVPELLQEE---AT 327 (380)
T ss_pred HHHHHHhCC--EEEECccHHHH-HHHHhCCCEEEEEccCHHHHHHHHHHHcCCeeehHHHhcC-CCcchhhcCCC---CC
Confidence 467889999 99999999888 9999999999985332 22222 234444 44444455555 79
Q ss_pred HHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHh
Q 045267 419 RDEIAKVVKALMEGEQ-GKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKWN 471 (482)
Q Consensus 419 ~~~l~~ai~~vl~~~~-~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~ 471 (482)
++.|++++.+++.|++ .++++++++.+.+.+ ..|++.+.++.+.+.+.
T Consensus 328 ~~~l~~~i~~ll~~~~~~~~~~~~~~~~~~~~-----~~~a~~~~~~~i~~~~~ 376 (380)
T PRK00025 328 PEKLARALLPLLADGARRQALLEGFTELHQQL-----RCGADERAAQAVLELLK 376 (380)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHh-----CCCHHHHHHHHHHHHhh
Confidence 9999999999999973 223444444444333 34677777777766554
No 39
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=99.58 E-value=4.7e-14 Score=135.13 Aligned_cols=104 Identities=18% Similarity=0.150 Sum_probs=76.9
Q ss_pred cEEEEeccCCCCCCHHHHHHHHHHHHhcC--CceEEEEeCCCCCCCCcccccCCCCCCCCCCchhHHhhh-cCCCeeecc
Q 045267 272 SVLFVSFGSGGTLSCEQLNELALGLEMSE--QRFLWVVRSPNNAANSTFFSVNSHKDPYDFLPKGFLDRT-KGRGMLVPS 348 (482)
Q Consensus 272 ~~v~vs~GS~~~~~~~~~~~~~~al~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~~v~~~~ 348 (482)
+.|+|++|.... ......++++++... .++.++++.... ..+.+.+.. ..+|+.+..
T Consensus 171 ~~iLi~~GG~d~--~~~~~~~l~~l~~~~~~~~i~vv~G~~~~------------------~~~~l~~~~~~~~~i~~~~ 230 (279)
T TIGR03590 171 RRVLVSFGGADP--DNLTLKLLSALAESQINISITLVTGSSNP------------------NLDELKKFAKEYPNIILFI 230 (279)
T ss_pred CeEEEEeCCcCC--cCHHHHHHHHHhccccCceEEEEECCCCc------------------CHHHHHHHHHhCCCEEEEe
Confidence 578999996433 224456677776643 456676665321 112333332 235888999
Q ss_pred ccch-hhhhhcccccccccccCchhHHHHhhcCCcEeeccccccchhhHHH
Q 045267 349 WAPQ-AQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAWPLYAEQKMNAVI 398 (482)
Q Consensus 349 ~ipq-~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~r 398 (482)
|+++ .++|..++ ++|++|| +|+.|+++.|+|+|++|...+|..||+.
T Consensus 231 ~~~~m~~lm~~aD--l~Is~~G-~T~~E~~a~g~P~i~i~~~~nQ~~~a~~ 278 (279)
T TIGR03590 231 DVENMAELMNEAD--LAIGAAG-STSWERCCLGLPSLAICLAENQQSNSQQ 278 (279)
T ss_pred CHHHHHHHHHHCC--EEEECCc-hHHHHHHHcCCCEEEEEecccHHHHhhh
Confidence 9996 58999999 9999999 9999999999999999999999999975
No 40
>PF04101 Glyco_tran_28_C: Glycosyltransferase family 28 C-terminal domain; InterPro: IPR007235 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC). Structural analysis suggests the C-terminal domain contains the UDP-GlcNAc binding site.; GO: 0016758 transferase activity, transferring hexosyl groups, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2KS6_A 2JZC_A 1NLM_B 1F0K_B.
Probab=99.52 E-value=1.6e-15 Score=134.27 Aligned_cols=86 Identities=22% Similarity=0.336 Sum_probs=76.0
Q ss_pred CCeeeccccc-hhhhhhcccccccccccCchhHHHHhhcCCcEeeccccc----cchhhHHHHHhhcceeeeeccCCCCc
Q 045267 342 RGMLVPSWAP-QAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAWPLYA----EQKMNAVILTEDVKLALRPKANENGI 416 (482)
Q Consensus 342 ~~v~~~~~ip-q~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~----DQ~~na~rv~~~~G~G~~l~~~~~~~ 416 (482)
.++.+.+|++ ..+++..+| ++|||||.||+.|++.+|+|+|++|... +|..||..+++ .|+|..+...+
T Consensus 55 ~~v~~~~~~~~m~~~m~~aD--lvIs~aG~~Ti~E~l~~g~P~I~ip~~~~~~~~q~~na~~~~~-~g~~~~~~~~~--- 128 (167)
T PF04101_consen 55 PNVKVFGFVDNMAELMAAAD--LVISHAGAGTIAEALALGKPAIVIPLPGAADNHQEENAKELAK-KGAAIMLDESE--- 128 (167)
T ss_dssp CCCEEECSSSSHHHHHHHHS--EEEECS-CHHHHHHHHCT--EEEE--TTT-T-CHHHHHHHHHH-CCCCCCSECCC---
T ss_pred CcEEEEechhhHHHHHHHcC--EEEeCCCccHHHHHHHcCCCeeccCCCCcchHHHHHHHHHHHH-cCCccccCccc---
Confidence 5888999999 899999999 9999999999999999999999999988 99999999999 99999998887
Q ss_pred cCHHHHHHHHHHHhcCC
Q 045267 417 VGRDEIAKVVKALMEGE 433 (482)
Q Consensus 417 ~~~~~l~~ai~~vl~~~ 433 (482)
.+.+.|.++|.+++.++
T Consensus 129 ~~~~~L~~~i~~l~~~~ 145 (167)
T PF04101_consen 129 LNPEELAEAIEELLSDP 145 (167)
T ss_dssp -SCCCHHHHHHCHCCCH
T ss_pred CCHHHHHHHHHHHHcCc
Confidence 88999999999999885
No 41
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=99.49 E-value=2.2e-11 Score=122.93 Aligned_cols=165 Identities=13% Similarity=0.205 Sum_probs=109.2
Q ss_pred CCcEEEEeccCCCCCCHHHHHHHHHHH-Hhc-CCceEEEEeCCCCCCCCcccccCCCCCCCCCCchhHHhhh-cCCCeee
Q 045267 270 LGSVLFVSFGSGGTLSCEQLNELALGL-EMS-EQRFLWVVRSPNNAANSTFFSVNSHKDPYDFLPKGFLDRT-KGRGMLV 346 (482)
Q Consensus 270 ~~~~v~vs~GS~~~~~~~~~~~~~~al-~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~~v~~ 346 (482)
++++|++..|+... ...+..+++++ +.. +.+++++.+.+.. +-+.+.+.. ...++.+
T Consensus 201 ~~~~ilv~~G~lg~--~k~~~~li~~~~~~~~~~~~vvv~G~~~~------------------l~~~l~~~~~~~~~v~~ 260 (391)
T PRK13608 201 DKQTILMSAGAFGV--SKGFDTMITDILAKSANAQVVMICGKSKE------------------LKRSLTAKFKSNENVLI 260 (391)
T ss_pred CCCEEEEECCCccc--chhHHHHHHHHHhcCCCceEEEEcCCCHH------------------HHHHHHHHhccCCCeEE
Confidence 45688888888652 23455555554 322 2355555443210 101222222 2357888
Q ss_pred ccccch-hhhhhcccccccccccCchhHHHHhhcCCcEeec-cccccchhhHHHHHhhcceeeeeccCCCCccCHHHHHH
Q 045267 347 PSWAPQ-AQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAW-PLYAEQKMNAVILTEDVKLALRPKANENGIVGRDEIAK 424 (482)
Q Consensus 347 ~~~ipq-~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~-P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ 424 (482)
.+|+.+ .+++..+| ++|+..|..|+.||+++|+|+|++ |..++|..|+..+++ .|+|+.+. +.+++.+
T Consensus 261 ~G~~~~~~~~~~~aD--l~I~k~gg~tl~EA~a~G~PvI~~~~~pgqe~~N~~~~~~-~G~g~~~~-------~~~~l~~ 330 (391)
T PRK13608 261 LGYTKHMNEWMASSQ--LMITKPGGITISEGLARCIPMIFLNPAPGQELENALYFEE-KGFGKIAD-------TPEEAIK 330 (391)
T ss_pred EeccchHHHHHHhhh--EEEeCCchHHHHHHHHhCCCEEECCCCCCcchhHHHHHHh-CCcEEEeC-------CHHHHHH
Confidence 899964 57899999 999998888999999999999998 777778899999999 99998753 6789999
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHh
Q 045267 425 VVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKWN 471 (482)
Q Consensus 425 ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~ 471 (482)
+|.++++|+ +.+ +++++.+++. ....+....++.+.+.+.
T Consensus 331 ~i~~ll~~~---~~~---~~m~~~~~~~-~~~~s~~~i~~~l~~l~~ 370 (391)
T PRK13608 331 IVASLTNGN---EQL---TNMISTMEQD-KIKYATQTICRDLLDLIG 370 (391)
T ss_pred HHHHHhcCH---HHH---HHHHHHHHHh-cCCCCHHHHHHHHHHHhh
Confidence 999999886 222 2333333331 134555666666665543
No 42
>PLN02605 monogalactosyldiacylglycerol synthase
Probab=99.43 E-value=9.4e-12 Score=125.30 Aligned_cols=112 Identities=13% Similarity=0.176 Sum_probs=83.1
Q ss_pred CCeeeccccc-hhhhhhcccccccccccCchhHHHHhhcCCcEeeccccccch-hhHHHHHhhcceeeeeccCCCCccCH
Q 045267 342 RGMLVPSWAP-QAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAWPLYAEQK-MNAVILTEDVKLALRPKANENGIVGR 419 (482)
Q Consensus 342 ~~v~~~~~ip-q~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~-~na~rv~~~~G~G~~l~~~~~~~~~~ 419 (482)
.++.+.+|++ ..+++..+| ++|+.+|.+|+.||+++|+|+|+.+....|. .|+..+.+ .|.|..+ -++
T Consensus 265 ~~v~~~G~~~~~~~l~~aaD--v~V~~~g~~ti~EAma~g~PvI~~~~~pgqe~gn~~~i~~-~g~g~~~-------~~~ 334 (382)
T PLN02605 265 IPVKVRGFVTNMEEWMGACD--CIITKAGPGTIAEALIRGLPIILNGYIPGQEEGNVPYVVD-NGFGAFS-------ESP 334 (382)
T ss_pred CCeEEEeccccHHHHHHhCC--EEEECCCcchHHHHHHcCCCEEEecCCCccchhhHHHHHh-CCceeec-------CCH
Confidence 4688889998 467899999 9999999999999999999999998765665 79999998 8999865 278
Q ss_pred HHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Q 045267 420 DEIAKVVKALMEG-EQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKW 470 (482)
Q Consensus 420 ~~l~~ai~~vl~~-~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~ 470 (482)
+.|.++|.+++.| + +.++ +|++..++. ....++.+.++.+.+.+
T Consensus 335 ~~la~~i~~ll~~~~---~~~~---~m~~~~~~~-~~~~a~~~i~~~l~~~~ 379 (382)
T PLN02605 335 KEIARIVAEWFGDKS---DELE---AMSENALKL-ARPEAVFDIVHDLHELV 379 (382)
T ss_pred HHHHHHHHHHHcCCH---HHHH---HHHHHHHHh-cCCchHHHHHHHHHHHh
Confidence 9999999999987 4 3333 333333321 12344555555555443
No 43
>TIGR03492 conserved hypothetical protein. This protein family is restricted to the Cyanobacteria, in one or two copies, save for instances in the genus Deinococcus. This protein shows some sequence similarity, especially toward the C-terminus, to lipid-A-disaccharide synthase (TIGR00215 or pfam02684). The function is unknown.
Probab=99.40 E-value=3.7e-11 Score=120.83 Aligned_cols=108 Identities=16% Similarity=0.132 Sum_probs=77.1
Q ss_pred eeeccccc-hhhhhhcccccccccccCchhHHHHhhcCCcEeeccccccchhhHHHHHhhc----ceeeeeccCCCCccC
Q 045267 344 MLVPSWAP-QAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDV----KLALRPKANENGIVG 418 (482)
Q Consensus 344 v~~~~~ip-q~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~----G~G~~l~~~~~~~~~ 418 (482)
+.+..+.. ..+++..++ ++|+-.|..| .|+..+|+|+|++|.-..|. |+...++ . |.+..+.. .+
T Consensus 281 ~~v~~~~~~~~~~l~~AD--lvI~rSGt~T-~E~a~lg~P~Ilip~~~~q~-na~~~~~-~~~l~g~~~~l~~-----~~ 350 (396)
T TIGR03492 281 LEVLLGRGAFAEILHWAD--LGIAMAGTAT-EQAVGLGKPVIQLPGKGPQF-TYGFAEA-QSRLLGGSVFLAS-----KN 350 (396)
T ss_pred eEEEechHhHHHHHHhCC--EEEECcCHHH-HHHHHhCCCEEEEeCCCCHH-HHHHHHh-hHhhcCCEEecCC-----CC
Confidence 44444443 467999999 9999999766 99999999999999877786 8877766 4 66666653 35
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHH-HHHHHHHHHhhcCCchHHHHHHHHH
Q 045267 419 RDEIAKVVKALMEGEQGKEVRNKMK-DLKDAAAAVLSENGSSTKALSQLAS 468 (482)
Q Consensus 419 ~~~l~~ai~~vl~~~~~~~~r~~a~-~l~~~~~~a~~~~g~~~~~~~~~~~ 468 (482)
.+.|.+++.+++.|+ +.+++.. ..++++ ..++.+.+.++.+.+
T Consensus 351 ~~~l~~~l~~ll~d~---~~~~~~~~~~~~~l----g~~~a~~~ia~~i~~ 394 (396)
T TIGR03492 351 PEQAAQVVRQLLADP---ELLERCRRNGQERM----GPPGASARIAESILK 394 (396)
T ss_pred HHHHHHHHHHHHcCH---HHHHHHHHHHHHhc----CCCCHHHHHHHHHHH
Confidence 599999999999886 4443333 233333 245666666666554
No 44
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=99.28 E-value=2.6e-12 Score=109.94 Aligned_cols=123 Identities=16% Similarity=0.167 Sum_probs=77.5
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCCchhhhhhhhcCCCceeEEEecCCCCCCCcchhhHHHHHHH
Q 045267 13 IVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPPSEAQKSTLESLPSSINSVFLPVSLNDVAEDARAETVISLT 92 (482)
Q Consensus 13 ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 92 (482)
|+|++.|+.||++|+++||++|++| ||+|++++++.+. .... ..|+.|..++.. ...+........+...
T Consensus 1 Ili~~~Gt~Ghv~P~lala~~L~~r-Gh~V~~~~~~~~~------~~v~--~~Gl~~~~~~~~-~~~~~~~~~~~~~~~~ 70 (139)
T PF03033_consen 1 ILIATGGTRGHVYPFLALARALRRR-GHEVRLATPPDFR------ERVE--AAGLEFVPIPGD-SRLPRSLEPLANLRRL 70 (139)
T ss_dssp EEEEEESSHHHHHHHHHHHHHHHHT-T-EEEEEETGGGH------HHHH--HTT-EEEESSSC-GGGGHHHHHHHHHHCH
T ss_pred CEEEEcCChhHHHHHHHHHHHHhcc-CCeEEEeecccce------eccc--ccCceEEEecCC-cCcCcccchhhhhhhH
Confidence 7899999999999999999999998 9999999988533 3333 347888888743 1111111111111111
Q ss_pred HH--hhhHHHHHHHHHHh--------hCCCccEEEeCCCCccHHHHHHHcCCccEEEccchHH
Q 045267 93 VL--RSLPCLRQELTSLV--------AKATVAALVVDLFGTDAFDVAQEFNISPYIFYPSTAM 145 (482)
Q Consensus 93 ~~--~~~~~l~~~l~~~~--------~~~~pD~vi~D~~~~~~~~~A~~lgIP~v~~~~~~~~ 145 (482)
.. .......+.+.+.. .....|+++.+.....+..+|+++|||++.....+..
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~vaE~~~iP~~~~~~~p~~ 133 (139)
T PF03033_consen 71 ARLIRGLEEAMRILARFRPDLVVAAGGYVADDVIIAAPLAFAAALVAEQLGIPGVANRLFPWF 133 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCHCTTTTECCEECHHHHHTHHHHHHHHHTS-EEEEESSGGG
T ss_pred HHHhhhhhHHHHHhhccCcchhhhccCcccchHHHhhhhcCccceeEhhhCchHHHHhhCCcC
Confidence 11 11222223333221 1235788888887778889999999999988776654
No 45
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=99.22 E-value=1.2e-08 Score=101.20 Aligned_cols=111 Identities=21% Similarity=0.206 Sum_probs=78.2
Q ss_pred CCCeeeccccchhh---hhhcccccccccccC----chhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCC
Q 045267 341 GRGMLVPSWAPQAQ---VLSHGSTGGFLCHCG----WNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANE 413 (482)
Q Consensus 341 ~~~v~~~~~ipq~~---lL~~~~~~~~I~HGG----~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 413 (482)
..|+.+.+|+|+.+ ++..++ ++|+.+. .+++.||+++|+|+|+.+.. .+...+++ .+.|...+..
T Consensus 246 ~~~v~~~g~~~~~~~~~~~~~~d--~~l~~s~~e~~~~~~lEa~a~g~PvI~~~~~----~~~~~i~~-~~~g~~~~~~- 317 (364)
T cd03814 246 YPNVHFLGFLDGEELAAAYASAD--VFVFPSRTETFGLVVLEAMASGLPVVAPDAG----GPADIVTD-GENGLLVEPG- 317 (364)
T ss_pred CCcEEEEeccCHHHHHHHHHhCC--EEEECcccccCCcHHHHHHHcCCCEEEcCCC----CchhhhcC-CcceEEcCCC-
Confidence 45888999998665 788899 7776654 47899999999999987644 45566777 7888877643
Q ss_pred CCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Q 045267 414 NGIVGRDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKW 470 (482)
Q Consensus 414 ~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~ 470 (482)
+.+++.+++.+++.|+ +.+++..+-+.... +.-+.+..++++++.+
T Consensus 318 ----~~~~l~~~i~~l~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 363 (364)
T cd03814 318 ----DAEAFAAALAALLADP---ELRRRMAARARAEA----ERRSWEAFLDNLLEAY 363 (364)
T ss_pred ----CHHHHHHHHHHHHcCH---HHHHHHHHHHHHHH----hhcCHHHHHHHHHHhh
Confidence 6788999999999987 33333332222222 2356666677766644
No 46
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=99.18 E-value=2.9e-08 Score=102.76 Aligned_cols=140 Identities=16% Similarity=0.150 Sum_probs=86.0
Q ss_pred EEEEeccCCCCCCHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCcccccCCCCCCCCCCchhHHhhhcCCCeeeccccch
Q 045267 273 VLFVSFGSGGTLSCEQLNELALGLEMSEQRFLWVVRSPNNAANSTFFSVNSHKDPYDFLPKGFLDRTKGRGMLVPSWAPQ 352 (482)
Q Consensus 273 ~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~ipq 352 (482)
.+++..|++. .......++++++..+.-.++.++.+. .-+.+++.....++.+.+++|+
T Consensus 264 ~~i~~vGrl~--~~K~~~~li~a~~~~~~~~l~ivG~G~-------------------~~~~l~~~~~~~~V~f~G~v~~ 322 (465)
T PLN02871 264 PLIVYVGRLG--AEKNLDFLKRVMERLPGARLAFVGDGP-------------------YREELEKMFAGTPTVFTGMLQG 322 (465)
T ss_pred eEEEEeCCCc--hhhhHHHHHHHHHhCCCcEEEEEeCCh-------------------HHHHHHHHhccCCeEEeccCCH
Confidence 4455667653 234466678888776532333444321 1133444444568889999986
Q ss_pred hh---hhhccccccccccc----CchhHHHHhhcCCcEeeccccccchhhHHHHHh--hcceeeeeccCCCCccCHHHHH
Q 045267 353 AQ---VLSHGSTGGFLCHC----GWNSVLESVVNGVPLIAWPLYAEQKMNAVILTE--DVKLALRPKANENGIVGRDEIA 423 (482)
Q Consensus 353 ~~---lL~~~~~~~~I~HG----G~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~--~~G~G~~l~~~~~~~~~~~~l~ 423 (482)
.+ ++..+| ++|.-. --.++.||+++|+|+|+....+ ....+++ +-+.|..++.. ++++++
T Consensus 323 ~ev~~~~~~aD--v~V~pS~~E~~g~~vlEAmA~G~PVI~s~~gg----~~eiv~~~~~~~~G~lv~~~-----d~~~la 391 (465)
T PLN02871 323 DELSQAYASGD--VFVMPSESETLGFVVLEAMASGVPVVAARAGG----IPDIIPPDQEGKTGFLYTPG-----DVDDCV 391 (465)
T ss_pred HHHHHHHHHCC--EEEECCcccccCcHHHHHHHcCCCEEEcCCCC----cHhhhhcCCCCCceEEeCCC-----CHHHHH
Confidence 54 778889 666432 2347889999999999876432 2223322 03667777643 679999
Q ss_pred HHHHHHhcCCc-hHHHHHHHHH
Q 045267 424 KVVKALMEGEQ-GKEVRNKMKD 444 (482)
Q Consensus 424 ~ai~~vl~~~~-~~~~r~~a~~ 444 (482)
++|.++++|++ .+++.+++++
T Consensus 392 ~~i~~ll~~~~~~~~~~~~a~~ 413 (465)
T PLN02871 392 EKLETLLADPELRERMGAAARE 413 (465)
T ss_pred HHHHHHHhCHHHHHHHHHHHHH
Confidence 99999998863 2234444443
No 47
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=99.12 E-value=7.4e-08 Score=97.22 Aligned_cols=81 Identities=14% Similarity=0.122 Sum_probs=62.7
Q ss_pred CCCeeeccccchhh---hhhcccccccccc----cCchhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCC
Q 045267 341 GRGMLVPSWAPQAQ---VLSHGSTGGFLCH----CGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANE 413 (482)
Q Consensus 341 ~~~v~~~~~ipq~~---lL~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 413 (482)
..++.+.+|+|+.+ ++..++ ++|.. |-..++.||+++|+|+|+.... .....+++ .+.|...+.
T Consensus 282 ~~~v~~~g~~~~~~~~~~~~~ad--i~l~ps~~e~~~~~l~Ea~a~G~Pvi~s~~~----~~~e~i~~-~~~g~~~~~-- 352 (398)
T cd03800 282 IDRVDFPGRVSREDLPALYRAAD--VFVNPALYEPFGLTALEAMACGLPVVATAVG----GPRDIVVD-GVTGLLVDP-- 352 (398)
T ss_pred CceEEEeccCCHHHHHHHHHhCC--EEEecccccccCcHHHHHHhcCCCEEECCCC----CHHHHccC-CCCeEEeCC--
Confidence 46899999999766 588888 66643 3246899999999999987543 45666777 678887764
Q ss_pred CCccCHHHHHHHHHHHhcCC
Q 045267 414 NGIVGRDEIAKVVKALMEGE 433 (482)
Q Consensus 414 ~~~~~~~~l~~ai~~vl~~~ 433 (482)
-+.++++++|.+++.++
T Consensus 353 ---~~~~~l~~~i~~l~~~~ 369 (398)
T cd03800 353 ---RDPEALAAALRRLLTDP 369 (398)
T ss_pred ---CCHHHHHHHHHHHHhCH
Confidence 36899999999999876
No 48
>COG3980 spsG Spore coat polysaccharide biosynthesis protein, predicted glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.11 E-value=9.2e-09 Score=94.01 Aligned_cols=143 Identities=15% Similarity=0.117 Sum_probs=105.4
Q ss_pred CcEEEEeccCCCCCCHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCcccccCCCCCCCCCCchhHHhhh-cCCCeeeccc
Q 045267 271 GSVLFVSFGSGGTLSCEQLNELALGLEMSEQRFLWVVRSPNNAANSTFFSVNSHKDPYDFLPKGFLDRT-KGRGMLVPSW 349 (482)
Q Consensus 271 ~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~~v~~~~~ 349 (482)
+.-|+||+|- +.+....-+++..++..+..+-+++++.. +-+.+++.+. ..+|+.+.-.
T Consensus 158 ~r~ilI~lGG--sDpk~lt~kvl~~L~~~~~nl~iV~gs~~------------------p~l~~l~k~~~~~~~i~~~~~ 217 (318)
T COG3980 158 KRDILITLGG--SDPKNLTLKVLAELEQKNVNLHIVVGSSN------------------PTLKNLRKRAEKYPNINLYID 217 (318)
T ss_pred hheEEEEccC--CChhhhHHHHHHHhhccCeeEEEEecCCC------------------cchhHHHHHHhhCCCeeeEec
Confidence 3469999984 33344566688888877766666666322 2234455555 3567766555
Q ss_pred cc-hhhhhhcccccccccccCchhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCCCCccCHHHHHHHHHH
Q 045267 350 AP-QAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENGIVGRDEIAKVVKA 428 (482)
Q Consensus 350 ip-q~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ 428 (482)
.. ...++..++ +.|+-||. |+.|++.-|+|.+++|+..-|---|...+. +|+-..+... ++++.....+.+
T Consensus 218 ~~dma~LMke~d--~aI~AaGs-tlyEa~~lgvP~l~l~~a~NQ~~~a~~f~~-lg~~~~l~~~----l~~~~~~~~~~~ 289 (318)
T COG3980 218 TNDMAELMKEAD--LAISAAGS-TLYEALLLGVPSLVLPLAENQIATAKEFEA-LGIIKQLGYH----LKDLAKDYEILQ 289 (318)
T ss_pred chhHHHHHHhcc--hheeccch-HHHHHHHhcCCceEEeeeccHHHHHHHHHh-cCchhhccCC----CchHHHHHHHHH
Confidence 54 566999999 99998885 899999999999999999999999999999 9999888754 577777778888
Q ss_pred HhcCCchHHHHHHHHH
Q 045267 429 LMEGEQGKEVRNKMKD 444 (482)
Q Consensus 429 vl~~~~~~~~r~~a~~ 444 (482)
+.+|. ..|.+...
T Consensus 290 i~~d~---~~rk~l~~ 302 (318)
T COG3980 290 IQKDY---ARRKNLSF 302 (318)
T ss_pred hhhCH---HHhhhhhh
Confidence 88886 44444433
No 49
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=99.11 E-value=3.7e-07 Score=92.51 Aligned_cols=83 Identities=17% Similarity=0.149 Sum_probs=61.0
Q ss_pred CCCeeeccccchhh---hhhccccccccc-ccCc-hhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCCCC
Q 045267 341 GRGMLVPSWAPQAQ---VLSHGSTGGFLC-HCGW-NSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENG 415 (482)
Q Consensus 341 ~~~v~~~~~ipq~~---lL~~~~~~~~I~-HGG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~ 415 (482)
.++|.+.+++|+.+ ++..+++-++.+ +.|. .++.||+++|+|+|+. |...+...+.+ -..|..++.
T Consensus 280 ~~~V~f~G~v~~~~~~~~l~~adv~v~~s~~e~~~~~llEAmA~G~PVIas----~~~g~~e~i~~-~~~G~lv~~---- 350 (396)
T cd03818 280 LSRVHFLGRVPYDQYLALLQVSDVHVYLTYPFVLSWSLLEAMACGCLVVGS----DTAPVREVITD-GENGLLVDF---- 350 (396)
T ss_pred cceEEEeCCCCHHHHHHHHHhCcEEEEcCcccccchHHHHHHHCCCCEEEc----CCCCchhhccc-CCceEEcCC----
Confidence 46899999999765 567888323223 2333 4899999999999986 44556666666 467777654
Q ss_pred ccCHHHHHHHHHHHhcCC
Q 045267 416 IVGRDEIAKVVKALMEGE 433 (482)
Q Consensus 416 ~~~~~~l~~ai~~vl~~~ 433 (482)
-++++++++|.++++|+
T Consensus 351 -~d~~~la~~i~~ll~~~ 367 (396)
T cd03818 351 -FDPDALAAAVIELLDDP 367 (396)
T ss_pred -CCHHHHHHHHHHHHhCH
Confidence 37899999999999886
No 50
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=99.09 E-value=2.4e-07 Score=91.46 Aligned_cols=81 Identities=15% Similarity=0.130 Sum_probs=61.9
Q ss_pred CCCeeeccccchhh---hhhccccccccc----ccC-chhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccC
Q 045267 341 GRGMLVPSWAPQAQ---VLSHGSTGGFLC----HCG-WNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKAN 412 (482)
Q Consensus 341 ~~~v~~~~~ipq~~---lL~~~~~~~~I~----HGG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~ 412 (482)
..++.+.+|+++.+ ++..++ ++|. ..| -.++.||+++|+|+|+.+. ..+...+.+ -+.|..++..
T Consensus 242 ~~~v~~~g~~~~~~~~~~~~~ad--~~i~ps~~~e~~~~~~~Ea~a~G~Pvi~~~~----~~~~e~i~~-~~~g~~~~~~ 314 (359)
T cd03823 242 DPRVEFLGAYPQEEIDDFYAEID--VLVVPSIWPENFPLVIREALAAGVPVIASDI----GGMAELVRD-GVNGLLFPPG 314 (359)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCC--EEEEcCcccCCCChHHHHHHHCCCCEEECCC----CCHHHHhcC-CCcEEEECCC
Confidence 46888999997655 588888 5552 233 3479999999999998654 456667777 5678877653
Q ss_pred CCCccCHHHHHHHHHHHhcCC
Q 045267 413 ENGIVGRDEIAKVVKALMEGE 433 (482)
Q Consensus 413 ~~~~~~~~~l~~ai~~vl~~~ 433 (482)
+.+++++++.++++|+
T Consensus 315 -----d~~~l~~~i~~l~~~~ 330 (359)
T cd03823 315 -----DAEDLAAALERLIDDP 330 (359)
T ss_pred -----CHHHHHHHHHHHHhCh
Confidence 5899999999999976
No 51
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=99.07 E-value=1.2e-07 Score=94.51 Aligned_cols=82 Identities=13% Similarity=0.146 Sum_probs=59.5
Q ss_pred cCCCeeeccccchhh---hhhcccccccccccC---------chhHHHHhhcCCcEeeccccccchhhHHHHHhhcceee
Q 045267 340 KGRGMLVPSWAPQAQ---VLSHGSTGGFLCHCG---------WNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLAL 407 (482)
Q Consensus 340 ~~~~v~~~~~ipq~~---lL~~~~~~~~I~HGG---------~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~ 407 (482)
..+|+.+.+++|+.+ ++..++ ++|.... -+++.||+++|+|+|+.+..+.+. .+.+ .+.|.
T Consensus 273 ~~~~v~~~g~~~~~~~~~~~~~~d--i~i~~~~~~~~~~~~~p~~~~Ea~~~G~pvi~~~~~~~~~----~~~~-~~~g~ 345 (394)
T cd03794 273 GLDNVTFLGRVPKEELPELLAAAD--VGLVPLKPGPAFEGVSPSKLFEYMAAGKPVLASVDGESAE----LVEE-AGAGL 345 (394)
T ss_pred CCCcEEEeCCCChHHHHHHHHhhC--eeEEeccCcccccccCchHHHHHHHCCCcEEEecCCCchh----hhcc-CCcce
Confidence 456898999998655 677888 5553322 234799999999999987655433 3344 46666
Q ss_pred eeccCCCCccCHHHHHHHHHHHhcCC
Q 045267 408 RPKANENGIVGRDEIAKVVKALMEGE 433 (482)
Q Consensus 408 ~l~~~~~~~~~~~~l~~ai~~vl~~~ 433 (482)
.++.. +.++++++|.+++.|+
T Consensus 346 ~~~~~-----~~~~l~~~i~~~~~~~ 366 (394)
T cd03794 346 VVPPG-----DPEALAAAILELLDDP 366 (394)
T ss_pred EeCCC-----CHHHHHHHHHHHHhCh
Confidence 66543 6899999999999886
No 52
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=99.06 E-value=4.6e-08 Score=100.04 Aligned_cols=72 Identities=22% Similarity=0.242 Sum_probs=56.5
Q ss_pred hhhhhccccccccc----ccCchhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCCCCccCHHHHHHHHHH
Q 045267 353 AQVLSHGSTGGFLC----HCGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENGIVGRDEIAKVVKA 428 (482)
Q Consensus 353 ~~lL~~~~~~~~I~----HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ 428 (482)
..++..+++ +|+. =||..++.||+++|+|+|+-|..+++......+.+ .|.+... -++++|++++.+
T Consensus 314 ~~~y~~aDi-~~v~~S~~e~~g~~~lEAma~G~PVI~g~~~~~~~e~~~~~~~-~g~~~~~-------~d~~~La~~l~~ 384 (425)
T PRK05749 314 GLLYAIADI-AFVGGSLVKRGGHNPLEPAAFGVPVISGPHTFNFKEIFERLLQ-AGAAIQV-------EDAEDLAKAVTY 384 (425)
T ss_pred HHHHHhCCE-EEECCCcCCCCCCCHHHHHHhCCCEEECCCccCHHHHHHHHHH-CCCeEEE-------CCHHHHHHHHHH
Confidence 557788883 2442 13444599999999999999998888888888877 7877663 367999999999
Q ss_pred HhcCC
Q 045267 429 LMEGE 433 (482)
Q Consensus 429 vl~~~ 433 (482)
+++|+
T Consensus 385 ll~~~ 389 (425)
T PRK05749 385 LLTDP 389 (425)
T ss_pred HhcCH
Confidence 99986
No 53
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=99.05 E-value=3.1e-07 Score=90.44 Aligned_cols=112 Identities=14% Similarity=0.206 Sum_probs=77.6
Q ss_pred cCCCeeeccccchhh---hhhccccccccc----ccCchhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccC
Q 045267 340 KGRGMLVPSWAPQAQ---VLSHGSTGGFLC----HCGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKAN 412 (482)
Q Consensus 340 ~~~~v~~~~~ipq~~---lL~~~~~~~~I~----HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~ 412 (482)
...++.+.+++++.+ ++..++ ++|. -|..+++.||+++|+|+|+.+. ......+++ .+.|...+..
T Consensus 254 ~~~~v~~~g~~~~~~~~~~~~~~d--i~i~~~~~~~~~~~~~Ea~~~g~pvI~~~~----~~~~~~~~~-~~~g~~~~~~ 326 (374)
T cd03801 254 LGDRVTFLGFVPDEDLPALYAAAD--VFVLPSLYEGFGLVLLEAMAAGLPVVASDV----GGIPEVVED-GETGLLVPPG 326 (374)
T ss_pred CCcceEEEeccChhhHHHHHHhcC--EEEecchhccccchHHHHHHcCCcEEEeCC----CChhHHhcC-CcceEEeCCC
Confidence 456888999998544 677888 5663 3557799999999999998755 556777776 6778777643
Q ss_pred CCCccCHHHHHHHHHHHhcCCchHHHHH-HHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Q 045267 413 ENGIVGRDEIAKVVKALMEGEQGKEVRN-KMKDLKDAAAAVLSENGSSTKALSQLASKW 470 (482)
Q Consensus 413 ~~~~~~~~~l~~ai~~vl~~~~~~~~r~-~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~ 470 (482)
+++++.+++.+++.++ +.++ ..+...+.+. +.-+.+...+++.+.+
T Consensus 327 -----~~~~l~~~i~~~~~~~---~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 373 (374)
T cd03801 327 -----DPEALAEAILRLLDDP---ELRRRLGEAARERVA----ERFSWDRVAARTEEVY 373 (374)
T ss_pred -----CHHHHHHHHHHHHcCh---HHHHHHHHHHHHHHH----HhcCHHHHHHHHHHhh
Confidence 5899999999999886 3333 2222222333 3456666666666543
No 54
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=99.01 E-value=3e-07 Score=91.22 Aligned_cols=80 Identities=11% Similarity=0.198 Sum_probs=62.0
Q ss_pred CCCeeeccccchhh---hhhcccccccccc----cCchhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCC
Q 045267 341 GRGMLVPSWAPQAQ---VLSHGSTGGFLCH----CGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANE 413 (482)
Q Consensus 341 ~~~v~~~~~ipq~~---lL~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 413 (482)
..++.+.+++|+.+ ++..++ ++|.- |+..++.||+++|+|+|+.. ....+..+++ .+.|..++..+
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad--~~l~~s~~e~~~~~~~Ea~~~g~PvI~~~----~~~~~~~i~~-~~~g~~~~~~~ 330 (374)
T cd03817 258 ADRVIFTGFVPREELPDYYKAAD--LFVFASTTETQGLVLLEAMAAGLPVVAVD----APGLPDLVAD-GENGFLFPPGD 330 (374)
T ss_pred CCcEEEeccCChHHHHHHHHHcC--EEEecccccCcChHHHHHHHcCCcEEEeC----CCChhhheec-CceeEEeCCCC
Confidence 46888999999765 677888 55532 34578999999999999864 4456667777 68888887654
Q ss_pred CCccCHHHHHHHHHHHhcCC
Q 045267 414 NGIVGRDEIAKVVKALMEGE 433 (482)
Q Consensus 414 ~~~~~~~~l~~ai~~vl~~~ 433 (482)
. ++.+++.++++++
T Consensus 331 ---~---~~~~~i~~l~~~~ 344 (374)
T cd03817 331 ---E---ALAEALLRLLQDP 344 (374)
T ss_pred ---H---HHHHHHHHHHhCh
Confidence 2 9999999999887
No 55
>PRK10307 putative glycosyl transferase; Provisional
Probab=98.99 E-value=1.1e-06 Score=89.65 Aligned_cols=116 Identities=8% Similarity=0.078 Sum_probs=74.5
Q ss_pred CCeeeccccchhh---hhhcccccccccccCc------hhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccC
Q 045267 342 RGMLVPSWAPQAQ---VLSHGSTGGFLCHCGW------NSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKAN 412 (482)
Q Consensus 342 ~~v~~~~~ipq~~---lL~~~~~~~~I~HGG~------gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~ 412 (482)
.|+.+.+|+|+.+ ++..+|+.++.+.-+. +.+.|++++|+|+|+....+.. ....++ +.|..++.
T Consensus 284 ~~v~f~G~~~~~~~~~~~~~aDi~v~ps~~e~~~~~~p~kl~eama~G~PVi~s~~~g~~--~~~~i~---~~G~~~~~- 357 (412)
T PRK10307 284 PNVHFLPLQPYDRLPALLKMADCHLLPQKAGAADLVLPSKLTNMLASGRNVVATAEPGTE--LGQLVE---GIGVCVEP- 357 (412)
T ss_pred CceEEeCCCCHHHHHHHHHhcCEeEEeeccCcccccCcHHHHHHHHcCCCEEEEeCCCch--HHHHHh---CCcEEeCC-
Confidence 4799999998654 6888885555444332 2368999999999998654321 112222 45666654
Q ss_pred CCCccCHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcc
Q 045267 413 ENGIVGRDEIAKVVKALMEGEQ-GKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKWNNNE 474 (482)
Q Consensus 413 ~~~~~~~~~l~~ai~~vl~~~~-~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~~~ 474 (482)
-+.++++++|.++++|++ .+.+++++++. ..+.-+.+..++++.+.+++..
T Consensus 358 ----~d~~~la~~i~~l~~~~~~~~~~~~~a~~~-------~~~~fs~~~~~~~~~~~~~~~~ 409 (412)
T PRK10307 358 ----ESVEALVAAIAALARQALLRPKLGTVAREY-------AERTLDKENVLRQFIADIRGLV 409 (412)
T ss_pred ----CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH-------HHHHcCHHHHHHHHHHHHHHHh
Confidence 378999999999998762 12333333332 2245566677777777776554
No 56
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=98.97 E-value=2.4e-06 Score=83.97 Aligned_cols=81 Identities=14% Similarity=0.133 Sum_probs=60.1
Q ss_pred CCCeeeccccc-hhhhhhccccccccccc----CchhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCCCC
Q 045267 341 GRGMLVPSWAP-QAQVLSHGSTGGFLCHC----GWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENG 415 (482)
Q Consensus 341 ~~~v~~~~~ip-q~~lL~~~~~~~~I~HG----G~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~ 415 (482)
..++.+.++.. ...++..++ ++|.-. --+++.||+++|+|+|+-+. ..+...+++ .+.|...+..
T Consensus 245 ~~~v~~~g~~~~~~~~~~~ad--i~i~ps~~e~~~~~~~Ea~~~G~Pvi~s~~----~~~~~~i~~-~~~g~~~~~~--- 314 (359)
T cd03808 245 EGRVEFLGFRDDVPELLAAAD--VFVLPSYREGLPRVLLEAMAMGRPVIATDV----PGCREAVID-GVNGFLVPPG--- 314 (359)
T ss_pred cceEEEeeccccHHHHHHhcc--EEEecCcccCcchHHHHHHHcCCCEEEecC----CCchhhhhc-CcceEEECCC---
Confidence 45777777754 456888898 666433 35789999999999998644 345566666 6777776543
Q ss_pred ccCHHHHHHHHHHHhcCC
Q 045267 416 IVGRDEIAKVVKALMEGE 433 (482)
Q Consensus 416 ~~~~~~l~~ai~~vl~~~ 433 (482)
+++++.+++.+++.|+
T Consensus 315 --~~~~~~~~i~~l~~~~ 330 (359)
T cd03808 315 --DAEALADAIERLIEDP 330 (359)
T ss_pred --CHHHHHHHHHHHHhCH
Confidence 6899999999999886
No 57
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=98.97 E-value=5.4e-07 Score=89.65 Aligned_cols=113 Identities=15% Similarity=0.145 Sum_probs=74.1
Q ss_pred CCeeeccccc-hh---hhhhcccccccccc----cCchhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCC
Q 045267 342 RGMLVPSWAP-QA---QVLSHGSTGGFLCH----CGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANE 413 (482)
Q Consensus 342 ~~v~~~~~ip-q~---~lL~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 413 (482)
.++...+|++ +. .++..++ ++|.- |..+++.||+++|+|+|+... ......+.+ -+.|..++.
T Consensus 244 ~~v~~~g~~~~~~~~~~~~~~ad--~~l~ps~~e~~g~~~~Eam~~g~PvI~~~~----~~~~e~~~~-~~~g~~~~~-- 314 (365)
T cd03825 244 FPVHYLGSLNDDESLALIYSAAD--VFVVPSLQENFPNTAIEALACGTPVVAFDV----GGIPDIVDH-GVTGYLAKP-- 314 (365)
T ss_pred CceEecCCcCCHHHHHHHHHhCC--EEEeccccccccHHHHHHHhcCCCEEEecC----CCChhheeC-CCceEEeCC--
Confidence 4677889998 43 4688888 67664 335799999999999998643 333444555 456665553
Q ss_pred CCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhh
Q 045267 414 NGIVGRDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKWNN 472 (482)
Q Consensus 414 ~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~ 472 (482)
.+.+++++++.+++.++ +.++ ++++..++...+.-+.++.++++.+.+++
T Consensus 315 ---~~~~~~~~~l~~l~~~~---~~~~---~~~~~~~~~~~~~~s~~~~~~~~~~~y~~ 364 (365)
T cd03825 315 ---GDPEDLAEGIEWLLADP---DERE---ELGEAARELAENEFDSRVQAKRYLSLYEE 364 (365)
T ss_pred ---CCHHHHHHHHHHHHhCH---HHHH---HHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 37899999999999886 3222 22222222222456667777777776543
No 58
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase. Epimerase activity was also demonstrated in a bifunctional rat enzyme, for which the N-terminal domain appears to be orthologous. The set of proteins found above the suggested cutoff includes E. coli WecB in one of two deeply branched clusters and the rat UDP-N-acetylglucosamine 2-epimerase domain in the other.
Probab=98.96 E-value=5.8e-08 Score=97.24 Aligned_cols=106 Identities=14% Similarity=0.138 Sum_probs=71.4
Q ss_pred CCeeeccccch---hhhhhcccccccccccCchhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCCCCccC
Q 045267 342 RGMLVPSWAPQ---AQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENGIVG 418 (482)
Q Consensus 342 ~~v~~~~~ipq---~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~ 418 (482)
+++.+.+.+++ ..++..++ ++|+-.|.. +.||+++|+|+|.++..++++. +.+ .|.+..+. -+
T Consensus 255 ~~v~~~~~~~~~~~~~~l~~ad--~vv~~Sg~~-~~EA~a~g~PvI~~~~~~~~~e----~~~-~g~~~lv~------~d 320 (365)
T TIGR00236 255 KRVHLIEPLEYLDFLNLAANSH--LILTDSGGV-QEEAPSLGKPVLVLRDTTERPE----TVE-AGTNKLVG------TD 320 (365)
T ss_pred CCEEEECCCChHHHHHHHHhCC--EEEECChhH-HHHHHHcCCCEEECCCCCCChH----HHh-cCceEEeC------CC
Confidence 57877776664 45677888 888877644 7999999999999976555553 334 57776553 37
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHH
Q 045267 419 RDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLAS 468 (482)
Q Consensus 419 ~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~ 468 (482)
++.|.+++.++++|+ +.+++...-.... ..++++.+.++.+.+
T Consensus 321 ~~~i~~ai~~ll~~~---~~~~~~~~~~~~~----g~~~a~~ri~~~l~~ 363 (365)
T TIGR00236 321 KENITKAAKRLLTDP---DEYKKMSNASNPY----GDGEASERIVEELLN 363 (365)
T ss_pred HHHHHHHHHHHHhCh---HHHHHhhhcCCCC----cCchHHHHHHHHHHh
Confidence 899999999999886 5554443322111 235566666655544
No 59
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.96 E-value=1.3e-06 Score=87.34 Aligned_cols=112 Identities=18% Similarity=0.175 Sum_probs=74.0
Q ss_pred CCCeeeccccch-hhhhhcccccccc----cccCchhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCCCC
Q 045267 341 GRGMLVPSWAPQ-AQVLSHGSTGGFL----CHCGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENG 415 (482)
Q Consensus 341 ~~~v~~~~~ipq-~~lL~~~~~~~~I----~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~ 415 (482)
..++.+.++.++ ..++..++ ++| .-|.-.++.||+++|+|+|+.. ....+..+++ -..|..++.
T Consensus 252 ~~~v~~~g~~~~~~~~~~~~d--~~v~ps~~E~~~~~~~EAma~g~PvI~s~----~~~~~e~i~~-~~~G~~~~~---- 320 (371)
T cd04962 252 QDDVLFLGKQDHVEELLSIAD--LFLLPSEKESFGLAALEAMACGVPVVASN----AGGIPEVVKH-GETGFLVDV---- 320 (371)
T ss_pred CceEEEecCcccHHHHHHhcC--EEEeCCCcCCCccHHHHHHHcCCCEEEeC----CCCchhhhcC-CCceEEcCC----
Confidence 346888887763 66788888 555 2234459999999999999854 4456666666 567766654
Q ss_pred ccCHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHh
Q 045267 416 IVGRDEIAKVVKALMEGEQ-GKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKWN 471 (482)
Q Consensus 416 ~~~~~~l~~ai~~vl~~~~-~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~ 471 (482)
-+.+++++++.+++.+++ .+++++++++. +. +.-+.+..++++.+.++
T Consensus 321 -~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~---~~----~~fs~~~~~~~~~~~y~ 369 (371)
T cd04962 321 -GDVEAMAEYALSLLEDDELWQEFSRAARNR---AA----ERFDSERIVPQYEALYR 369 (371)
T ss_pred -CCHHHHHHHHHHHHhCHHHHHHHHHHHHHH---HH----HhCCHHHHHHHHHHHHH
Confidence 368999999999998762 12233333332 12 34566667777766554
No 60
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases. The yeast gene ALG1 has been shown to function as a mannosyltransferase that catalyzes the formation of dolichol pyrophosphate (Dol-PP)-GlcNAc2Man from GDP-Man and Dol-PP-Glc-NAc2, and participates in the formation of the lipid-linked precursor oligosaccharide for N-glycosylation. In humans ALG1 has been associated with the congenital disorders of glycosylation (CDG) designated as subtype CDG-Ik.
Probab=98.95 E-value=8.7e-07 Score=90.28 Aligned_cols=91 Identities=13% Similarity=0.150 Sum_probs=62.2
Q ss_pred CCeeec-cccchhh---hhhccccccccc-c------cCchhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeec
Q 045267 342 RGMLVP-SWAPQAQ---VLSHGSTGGFLC-H------CGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPK 410 (482)
Q Consensus 342 ~~v~~~-~~ipq~~---lL~~~~~~~~I~-H------GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~ 410 (482)
.++++. +|+|..+ +|..++ ++|. + |--+++.||+++|+|+|+.. .......+++ -+.|..++
T Consensus 294 ~~~~~~~g~~~~~~~~~~l~~aD--v~v~~~~~~~~~~~p~~~~Eama~G~PVI~s~----~~~~~eiv~~-~~~G~lv~ 366 (415)
T cd03816 294 KKVTIRTPWLSAEDYPKLLASAD--LGVSLHTSSSGLDLPMKVVDMFGCGLPVCALD----FKCIDELVKH-GENGLVFG 366 (415)
T ss_pred CcEEEEcCcCCHHHHHHHHHhCC--EEEEccccccccCCcHHHHHHHHcCCCEEEeC----CCCHHHHhcC-CCCEEEEC
Confidence 456544 6888544 578899 5552 1 12347999999999999864 3456677777 67888772
Q ss_pred cCCCCccCHHHHHHHHHHHhcC---Cc-hHHHHHHHHHHH
Q 045267 411 ANENGIVGRDEIAKVVKALMEG---EQ-GKEVRNKMKDLK 446 (482)
Q Consensus 411 ~~~~~~~~~~~l~~ai~~vl~~---~~-~~~~r~~a~~l~ 446 (482)
+.++|+++|.++++| ++ .+.+.+++++..
T Consensus 367 -------d~~~la~~i~~ll~~~~~~~~~~~m~~~~~~~~ 399 (415)
T cd03816 367 -------DSEELAEQLIDLLSNFPNRGKLNSLKKGAQEES 399 (415)
T ss_pred -------CHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh
Confidence 579999999999998 42 234444444433
No 61
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc). The enzyme serves to produce an activated form of ManNAc residues (UDP-ManNAc) for use in the biosynthesis of a variety of cell surface polysaccharides; The mammalian enzyme is bifunctional, catalyzing both the inversion of stereochemistry at C-2 and the hydrolysis of the UDP-sugar linkage to generate free ManNAc. It also catalyzes the phosphorylation of ManNAc to generate ManNAc 6-phosphate, a precursor to salic acids. In mammals, sialic acids are found at the termini of oligosaccharides in a large variety of cell surface glycoconjugates and are key mediators of cell-cell recognition events. Mutations in human members of this family have been associated with Sialuria, a rare disease caused by the disorders of sialic acid metabolism. This family belongs to the GT-B st
Probab=98.94 E-value=4.1e-08 Score=98.12 Aligned_cols=131 Identities=15% Similarity=0.098 Sum_probs=86.7
Q ss_pred CcEEEEeccCCCCC-CHHHHHHHHHHHHhcCCc-eEEEEeCCCCCCCCcccccCCCCCCCCCCchhHHhh---hc--CCC
Q 045267 271 GSVLFVSFGSGGTL-SCEQLNELALGLEMSEQR-FLWVVRSPNNAANSTFFSVNSHKDPYDFLPKGFLDR---TK--GRG 343 (482)
Q Consensus 271 ~~~v~vs~GS~~~~-~~~~~~~~~~al~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~---~~--~~~ 343 (482)
++.+++++|..... ..+.+..++++++..... +.++...+.. .-+.+++. .. .++
T Consensus 198 ~~~vlv~~~r~~~~~~~k~~~~l~~al~~l~~~~~~vi~~~~~~------------------~~~~l~~~~~~~~~~~~~ 259 (363)
T cd03786 198 KKYILVTLHRVENVDDGEQLEEILEALAELAEEDVPVVFPNHPR------------------TRPRIREAGLEFLGHHPN 259 (363)
T ss_pred CCEEEEEeCCccccCChHHHHHHHHHHHHHHhcCCEEEEECCCC------------------hHHHHHHHHHhhccCCCC
Confidence 45788888875443 456677888888776443 5554433211 00222222 11 357
Q ss_pred eeeccccchh---hhhhcccccccccccCchhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCCCCccCHH
Q 045267 344 MLVPSWAPQA---QVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENGIVGRD 420 (482)
Q Consensus 344 v~~~~~ipq~---~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~ 420 (482)
+.+.++.++. .++..++ +||+..| |.+.||+++|+|+|+++.. |. +..+.+ .|++..+. -+.+
T Consensus 260 v~~~~~~~~~~~~~l~~~ad--~~v~~Sg-gi~~Ea~~~g~PvI~~~~~--~~--~~~~~~-~g~~~~~~------~~~~ 325 (363)
T cd03786 260 VLLISPLGYLYFLLLLKNAD--LVLTDSG-GIQEEASFLGVPVLNLRDR--TE--RPETVE-SGTNVLVG------TDPE 325 (363)
T ss_pred EEEECCcCHHHHHHHHHcCc--EEEEcCc-cHHhhhhhcCCCEEeeCCC--Cc--cchhhh-eeeEEecC------CCHH
Confidence 7776665543 4677899 9999999 7888999999999998743 22 445556 67776653 2579
Q ss_pred HHHHHHHHHhcCC
Q 045267 421 EIAKVVKALMEGE 433 (482)
Q Consensus 421 ~l~~ai~~vl~~~ 433 (482)
+|.+++.++++++
T Consensus 326 ~i~~~i~~ll~~~ 338 (363)
T cd03786 326 AILAAIEKLLSDE 338 (363)
T ss_pred HHHHHHHHHhcCc
Confidence 9999999999885
No 62
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=98.90 E-value=2.8e-06 Score=83.97 Aligned_cols=111 Identities=14% Similarity=0.103 Sum_probs=74.0
Q ss_pred CCCeeeccccchh---hhhhcccccccc----cccCchhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCC
Q 045267 341 GRGMLVPSWAPQA---QVLSHGSTGGFL----CHCGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANE 413 (482)
Q Consensus 341 ~~~v~~~~~ipq~---~lL~~~~~~~~I----~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 413 (482)
..|+.+.+++++. .++..++ ++| +-|..+++.||+++|+|+|+-+. ......+++ .+.|...+.
T Consensus 258 ~~~v~~~g~~~~~~~~~~~~~ad--~~i~~~~~~~~~~~~~Ea~~~G~pvI~~~~----~~~~~~~~~-~~~g~~~~~-- 328 (377)
T cd03798 258 EDRVTFLGAVPHEEVPAYYAAAD--VFVLPSLREGFGLVLLEAMACGLPVVATDV----GGIPEIITD-GENGLLVPP-- 328 (377)
T ss_pred cceEEEeCCCCHHHHHHHHHhcC--eeecchhhccCChHHHHHHhcCCCEEEecC----CChHHHhcC-CcceeEECC--
Confidence 4689999999865 4677788 554 23556789999999999998654 345566677 677776654
Q ss_pred CCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHh
Q 045267 414 NGIVGRDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKWN 471 (482)
Q Consensus 414 ~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~ 471 (482)
-+.+++.+++.+++.++ .. +..++-.+.+. +.-+.+...+++.+.+.
T Consensus 329 ---~~~~~l~~~i~~~~~~~---~~-~~~~~~~~~~~----~~~s~~~~~~~~~~~~~ 375 (377)
T cd03798 329 ---GDPEALAEAILRLLADP---WL-RLGRAARRRVA----ERFSWENVAERLLELYR 375 (377)
T ss_pred ---CCHHHHHHHHHHHhcCc---HH-HHhHHHHHHHH----HHhhHHHHHHHHHHHHh
Confidence 37899999999999886 32 22222222222 23444455566665554
No 63
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.88 E-value=1.1e-06 Score=87.02 Aligned_cols=131 Identities=13% Similarity=0.055 Sum_probs=83.1
Q ss_pred EEEEeccCCCCCCHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCcccccCCCCCCCCCCchhHHh----hhcCCCeeecc
Q 045267 273 VLFVSFGSGGTLSCEQLNELALGLEMSEQRFLWVVRSPNNAANSTFFSVNSHKDPYDFLPKGFLD----RTKGRGMLVPS 348 (482)
Q Consensus 273 ~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~----~~~~~~v~~~~ 348 (482)
.+++..|+.. .......++++++... ++.+.+.+... ..+.+.+ .....||.+.+
T Consensus 192 ~~i~~~G~~~--~~K~~~~li~a~~~l~-~~~l~i~G~g~------------------~~~~~~~~~~~~~~~~~V~~~g 250 (357)
T cd03795 192 PFFLFVGRLV--YYKGLDVLLEAAAALP-DAPLVIVGEGP------------------LEAELEALAAALGLLDRVRFLG 250 (357)
T ss_pred cEEEEecccc--cccCHHHHHHHHHhcc-CcEEEEEeCCh------------------hHHHHHHHHHhcCCcceEEEcC
Confidence 5667777653 3344666778887776 33333332211 1122222 12357899999
Q ss_pred ccchh---hhhhccccccccc---ccCch-hHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCCCCccCHHH
Q 045267 349 WAPQA---QVLSHGSTGGFLC---HCGWN-SVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENGIVGRDE 421 (482)
Q Consensus 349 ~ipq~---~lL~~~~~~~~I~---HGG~g-s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~ 421 (482)
|+|+. .++..+++.++.+ +.|.| ++.||+++|+|+|+....+....+.. + -+.|...+. -+.++
T Consensus 251 ~v~~~~~~~~~~~ad~~i~ps~~~~e~~g~~~~Ea~~~g~Pvi~~~~~~~~~~i~~---~-~~~g~~~~~-----~d~~~ 321 (357)
T cd03795 251 RLDDEEKAALLAACDVFVFPSVERSEAFGIVLLEAMAFGKPVISTEIGTGGSYVNL---H-GVTGLVVPP-----GDPAA 321 (357)
T ss_pred CCCHHHHHHHHHhCCEEEeCCcccccccchHHHHHHHcCCCEEecCCCCchhHHhh---C-CCceEEeCC-----CCHHH
Confidence 99975 4777788433333 23444 79999999999999765554443333 3 467766653 37899
Q ss_pred HHHHHHHHhcCC
Q 045267 422 IAKVVKALMEGE 433 (482)
Q Consensus 422 l~~ai~~vl~~~ 433 (482)
++++|.++++|+
T Consensus 322 ~~~~i~~l~~~~ 333 (357)
T cd03795 322 LAEAIRRLLEDP 333 (357)
T ss_pred HHHHHHHHHHCH
Confidence 999999999987
No 64
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=98.87 E-value=2.8e-06 Score=83.14 Aligned_cols=81 Identities=17% Similarity=0.172 Sum_probs=57.5
Q ss_pred CCCeeeccccc-hhhhhhccccccccccc----CchhHHHHhhcCCcEeeccccccchhhHHHHHhhcc-eeeeeccCCC
Q 045267 341 GRGMLVPSWAP-QAQVLSHGSTGGFLCHC----GWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVK-LALRPKANEN 414 (482)
Q Consensus 341 ~~~v~~~~~ip-q~~lL~~~~~~~~I~HG----G~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G-~G~~l~~~~~ 414 (482)
..++.+.++.. -..++..++ ++|.-. .-+++.||+++|+|+|+.+..+.+ ..+.. .| .|..++.
T Consensus 234 ~~~v~~~g~~~~~~~~~~~ad--~~i~ps~~e~~~~~~~Ea~a~G~Pvi~~~~~~~~----~~~~~-~~~~g~~~~~--- 303 (348)
T cd03820 234 EDRVILLGFTKNIEEYYAKAS--IFVLTSRFEGFPMVLLEAMAFGLPVISFDCPTGP----SEIIE-DGVNGLLVPN--- 303 (348)
T ss_pred CCeEEEcCCcchHHHHHHhCC--EEEeCccccccCHHHHHHHHcCCCEEEecCCCch----Hhhhc-cCcceEEeCC---
Confidence 45677777633 456888888 666443 256899999999999987544433 23334 45 7777754
Q ss_pred CccCHHHHHHHHHHHhcCC
Q 045267 415 GIVGRDEIAKVVKALMEGE 433 (482)
Q Consensus 415 ~~~~~~~l~~ai~~vl~~~ 433 (482)
-+.++++++|.++++|+
T Consensus 304 --~~~~~~~~~i~~ll~~~ 320 (348)
T cd03820 304 --GDVEALAEALLRLMEDE 320 (348)
T ss_pred --CCHHHHHHHHHHHHcCH
Confidence 36799999999999987
No 65
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=98.83 E-value=4.2e-06 Score=84.84 Aligned_cols=114 Identities=11% Similarity=0.091 Sum_probs=71.4
Q ss_pred CCCeeeccccchhh---hhhccccccccc---ccCch-hHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCC
Q 045267 341 GRGMLVPSWAPQAQ---VLSHGSTGGFLC---HCGWN-SVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANE 413 (482)
Q Consensus 341 ~~~v~~~~~ipq~~---lL~~~~~~~~I~---HGG~g-s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 413 (482)
.+++.+.+|+|+.+ +++.++ ++|. +-|.| ++.||+++|+|+|+-+..+ ....+.+ |-+....
T Consensus 249 ~~~v~~~G~~~~~~~~~~l~~ad--~~v~pS~~E~~g~~~~EAma~G~PVI~s~~gg----~~e~i~~--~~~~~~~--- 317 (398)
T cd03796 249 QDRVELLGAVPHERVRDVLVQGH--IFLNTSLTEAFCIAIVEAASCGLLVVSTRVGG----IPEVLPP--DMILLAE--- 317 (398)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCC--EEEeCChhhccCHHHHHHHHcCCCEEECCCCC----chhheeC--CceeecC---
Confidence 45688899998644 777888 5543 33444 9999999999999976643 2334444 3332222
Q ss_pred CCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhcc
Q 045267 414 NGIVGRDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKWNNNE 474 (482)
Q Consensus 414 ~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~~~ 474 (482)
.+.+++++++.+++.+.. ..+ .+.+..++...+.-+-+..++++++.+.+..
T Consensus 318 ---~~~~~l~~~l~~~l~~~~----~~~--~~~~~~~~~~~~~fs~~~~~~~~~~~y~~l~ 369 (398)
T cd03796 318 ---PDVESIVRKLEEAISILR----TGK--HDPWSFHNRVKKMYSWEDVAKRTEKVYDRIL 369 (398)
T ss_pred ---CCHHHHHHHHHHHHhChh----hhh--hHHHHHHHHHHhhCCHHHHHHHHHHHHHHHh
Confidence 367999999999998641 111 1222222333356777777777777655543
No 66
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=98.80 E-value=8.1e-06 Score=79.51 Aligned_cols=295 Identities=15% Similarity=0.111 Sum_probs=151.8
Q ss_pred CCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCCchhhhhhhhcCCCceeEEEecCCCCCCCcchhhHHHHHHHHHhhhH
Q 045267 19 PGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPPSEAQKSTLESLPSSINSVFLPVSLNDVAEDARAETVISLTVLRSLP 98 (482)
Q Consensus 19 ~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (482)
...-|+.=+-.+.++|.++ ||+|.+.+-+.. ....+...+ |+.+..+.-... .....+.....+ .-
T Consensus 8 ~~p~hvhfFk~~I~eL~~~-GheV~it~R~~~----~~~~LL~~y--g~~y~~iG~~g~------~~~~Kl~~~~~R-~~ 73 (335)
T PF04007_consen 8 THPAHVHFFKNIIRELEKR-GHEVLITARDKD----ETEELLDLY--GIDYIVIGKHGD------SLYGKLLESIER-QY 73 (335)
T ss_pred CCchHHHHHHHHHHHHHhC-CCEEEEEEeccc----hHHHHHHHc--CCCeEEEcCCCC------CHHHHHHHHHHH-HH
Confidence 3445999999999999888 999999986532 333444433 566655552111 112222222221 11
Q ss_pred HHHHHHHHHhhCCCccEEEeCCCCccHHHHHHHcCCccEEEccchHHHHHHHhhhhhhhccCCCCCcccCCCCcccCCCC
Q 045267 99 CLRQELTSLVAKATVAALVVDLFGTDAFDVAQEFNISPYIFYPSTAMCLSLFLHLEKLDQMVPRDCEYRDMSEPVQIPGC 178 (482)
Q Consensus 99 ~l~~~l~~~~~~~~pD~vi~D~~~~~~~~~A~~lgIP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 178 (482)
.+ .+++.+.+||++|+-. ++.+..+|.-+|+|++.+.=+..........
T Consensus 74 ~l----~~~~~~~~pDv~is~~-s~~a~~va~~lgiP~I~f~D~e~a~~~~~Lt-------------------------- 122 (335)
T PF04007_consen 74 KL----LKLIKKFKPDVAISFG-SPEAARVAFGLGIPSIVFNDTEHAIAQNRLT-------------------------- 122 (335)
T ss_pred HH----HHHHHhhCCCEEEecC-cHHHHHHHHHhCCCeEEEecCchhhccceee--------------------------
Confidence 22 2333456999999755 6778889999999999876543222100000
Q ss_pred CccccCCCCcccccccchHHHHHHHHHhhcccccEEE-EcCccccchhHHHHhhhcCCCCCCCeEeeccCcCCCCCCccc
Q 045267 179 IPVHGGYLLDPVQDRKNEAYRWVLHHAKRYKLAEGII-VNSFTDLEGGALKALQHQDEPGKPPVYPVGPLVKTGSTAESK 257 (482)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~l~~~~~~~~~~~~~p~~p~~~~vGp~~~~~~~~~~~ 257 (482)
.|+...-+....... ..++.+ .....+. .+.+. .+.++-|.- +
T Consensus 123 ~Pla~~i~~P~~~~~--~~~~~~-------G~~~~i~~y~G~~-------------------E~ayl~~F~--------P 166 (335)
T PF04007_consen 123 LPLADVIITPEAIPK--EFLKRF-------GAKNQIRTYNGYK-------------------ELAYLHPFK--------P 166 (335)
T ss_pred hhcCCeeECCcccCH--HHHHhc-------CCcCCEEEECCee-------------------eEEeecCCC--------C
Confidence 010110000000000 000000 0000111 22222 222222211 1
Q ss_pred cccccccccCCCCCcEEEEeccCCCC----CCHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCcccccCCCCCCCCCCch
Q 045267 258 NEGCLKWLDDQPLGSVLFVSFGSGGT----LSCEQLNELALGLEMSEQRFLWVVRSPNNAANSTFFSVNSHKDPYDFLPK 333 (482)
Q Consensus 258 ~~~~~~~l~~~~~~~~v~vs~GS~~~----~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lp~ 333 (482)
+++..+-+.- ++.+.|++.+.+... .....+..+++.|+..+.. |+.+..... .++
T Consensus 167 d~~vl~~lg~-~~~~yIvvR~~~~~A~y~~~~~~i~~~ii~~L~~~~~~-vV~ipr~~~------------------~~~ 226 (335)
T PF04007_consen 167 DPEVLKELGL-DDEPYIVVRPEAWKASYDNGKKSILPEIIEELEKYGRN-VVIIPRYED------------------QRE 226 (335)
T ss_pred ChhHHHHcCC-CCCCEEEEEeccccCeeecCccchHHHHHHHHHhhCce-EEEecCCcc------------------hhh
Confidence 1111122221 124577777766321 2345567788999888877 444443211 111
Q ss_pred hHHhhhcCCCe-eeccccchhhhhhcccccccccccCchhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccC
Q 045267 334 GFLDRTKGRGM-LVPSWAPQAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKAN 412 (482)
Q Consensus 334 ~~~~~~~~~~v-~~~~~ipq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~ 412 (482)
-+ ++. ++ +...-+...++|.+++ ++|+-|| ....||...|+|.|-+ +.++-...-+.+.+ .|+-.+.
T Consensus 227 ~~-~~~---~~~i~~~~vd~~~Ll~~a~--l~Ig~gg-TMa~EAA~LGtPaIs~-~~g~~~~vd~~L~~-~Gll~~~--- 294 (335)
T PF04007_consen 227 LF-EKY---GVIIPPEPVDGLDLLYYAD--LVIGGGG-TMAREAALLGTPAISC-FPGKLLAVDKYLIE-KGLLYHS--- 294 (335)
T ss_pred HH-hcc---CccccCCCCCHHHHHHhcC--EEEeCCc-HHHHHHHHhCCCEEEe-cCCcchhHHHHHHH-CCCeEec---
Confidence 11 111 22 2234444558999999 9998777 8889999999999975 22333334455677 6763322
Q ss_pred CCCccCHHHHHHHHHHHh
Q 045267 413 ENGIVGRDEIAKVVKALM 430 (482)
Q Consensus 413 ~~~~~~~~~l~~ai~~vl 430 (482)
-+++++.+.+.+-+
T Consensus 295 ----~~~~ei~~~v~~~~ 308 (335)
T PF04007_consen 295 ----TDPDEIVEYVRKNL 308 (335)
T ss_pred ----CCHHHHHHHHHHhh
Confidence 36677777555544
No 67
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=98.75 E-value=3.1e-05 Score=78.16 Aligned_cols=80 Identities=15% Similarity=0.098 Sum_probs=59.2
Q ss_pred CCCeeeccccchh---hhhhcccccccccc---cC-chhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCC
Q 045267 341 GRGMLVPSWAPQA---QVLSHGSTGGFLCH---CG-WNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANE 413 (482)
Q Consensus 341 ~~~v~~~~~ipq~---~lL~~~~~~~~I~H---GG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 413 (482)
.++|.+.+++|.. .++..++ +++.. -| -.++.||+++|+|+|+.-. ......+.+ -+.|...+
T Consensus 279 ~~~V~f~g~~~~~~~~~~l~~ad--~~l~~s~~E~~g~~~lEAma~G~PvI~s~~----~~~~e~i~~-~~~g~~~~--- 348 (392)
T cd03805 279 EDQVIFLPSISDSQKELLLSSAR--ALLYTPSNEHFGIVPLEAMYAGKPVIACNS----GGPLETVVD-GETGFLCE--- 348 (392)
T ss_pred CceEEEeCCCChHHHHHHHhhCe--EEEECCCcCCCCchHHHHHHcCCCEEEECC----CCcHHHhcc-CCceEEeC---
Confidence 4689999999975 4688888 55532 22 3578999999999999743 334455666 56777664
Q ss_pred CCccCHHHHHHHHHHHhcCC
Q 045267 414 NGIVGRDEIAKVVKALMEGE 433 (482)
Q Consensus 414 ~~~~~~~~l~~ai~~vl~~~ 433 (482)
.++++++++|.++++++
T Consensus 349 ---~~~~~~a~~i~~l~~~~ 365 (392)
T cd03805 349 ---PTPEEFAEAMLKLANDP 365 (392)
T ss_pred ---CCHHHHHHHHHHHHhCh
Confidence 36799999999999886
No 68
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=98.74 E-value=1.9e-06 Score=84.63 Aligned_cols=159 Identities=16% Similarity=0.090 Sum_probs=99.6
Q ss_pred cEEEEeccCCCCCCHHHHHHHHHHHHhcCCc-eEEEEeCCCCCCCCcccccCCCCCCCCCCchhHHhhhc-CCCeeeccc
Q 045267 272 SVLFVSFGSGGTLSCEQLNELALGLEMSEQR-FLWVVRSPNNAANSTFFSVNSHKDPYDFLPKGFLDRTK-GRGMLVPSW 349 (482)
Q Consensus 272 ~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~v~~~~~ 349 (482)
++|.+--||-.+.-...+..++++.+.+... ..+.+..... . +.+.+... ...+.+.+
T Consensus 168 ~~I~llPGSR~~Ei~~llP~~~~aa~~L~~~~~~~~i~~a~~------------------~-~~i~~~~~~~~~~~~~~- 227 (347)
T PRK14089 168 GTIAFMPGSRKSEIKRLMPIFKELAKKLEGKEKILVVPSFFK------------------G-KDLKEIYGDISEFEISY- 227 (347)
T ss_pred CEEEEECCCCHHHHHHHHHHHHHHHHHHhhcCcEEEEeCCCc------------------H-HHHHHHHhcCCCcEEec-
Confidence 5888888885443334444455666555332 2333332111 0 22222221 11222222
Q ss_pred cchhhhhhcccccccccccCchhHHHHhhcCCcEeeccc--cccchhhHHHHH---hhcceeeee-------------cc
Q 045267 350 APQAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAWPL--YAEQKMNAVILT---EDVKLALRP-------------KA 411 (482)
Q Consensus 350 ipq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~--~~DQ~~na~rv~---~~~G~G~~l-------------~~ 411 (482)
.-.+++..+| ++|+-.|..|+ |+..+|+|||+ ++ ..-|+.||+++. . .|+...+ -.
T Consensus 228 -~~~~~m~~aD--lal~~SGT~TL-E~al~g~P~Vv-~Yk~~~lty~iak~lv~~~~-igL~Nii~~~~~~~~vvPEllQ 301 (347)
T PRK14089 228 -DTHKALLEAE--FAFICSGTATL-EAALIGTPFVL-AYKAKAIDYFIAKMFVKLKH-IGLANIFFDFLGKEPLHPELLQ 301 (347)
T ss_pred -cHHHHHHhhh--HHHhcCcHHHH-HHHHhCCCEEE-EEeCCHHHHHHHHHHHcCCe-eehHHHhcCCCcccccCchhhc
Confidence 3457899999 99999999999 99999999998 54 457899999999 7 7777555 23
Q ss_pred CCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHH
Q 045267 412 NENGIVGRDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLAS 468 (482)
Q Consensus 412 ~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~ 468 (482)
++ .|++.|.+++.+. .. +.+++...++++.+. . +++.++.+.+.+
T Consensus 302 ~~---~t~~~la~~i~~~-~~---~~~~~~~~~l~~~l~----~-~a~~~~A~~i~~ 346 (347)
T PRK14089 302 EF---VTVENLLKAYKEM-DR---EKFFKKSKELREYLK----H-GSAKNVAKILKE 346 (347)
T ss_pred cc---CCHHHHHHHHHHH-HH---HHHHHHHHHHHHHhc----C-CHHHHHHHHHhc
Confidence 55 8999999999872 11 256666666666653 3 666666665543
No 69
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=98.73 E-value=1.7e-05 Score=78.49 Aligned_cols=81 Identities=11% Similarity=-0.008 Sum_probs=56.8
Q ss_pred CCCeeeccccchhh---hhhcccccccccc--cCchhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCCCC
Q 045267 341 GRGMLVPSWAPQAQ---VLSHGSTGGFLCH--CGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENG 415 (482)
Q Consensus 341 ~~~v~~~~~ipq~~---lL~~~~~~~~I~H--GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~ 415 (482)
..++.+.+|+++.+ ++..+++-++-++ |-.+++.||+++|+|+|+.+. ......+.+ +.|...+
T Consensus 261 ~~~v~~~g~~~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G~PvI~~~~----~~~~~~~~~--~~~~~~~----- 329 (375)
T cd03821 261 EDRVTFTGMLYGEDKAAALADADLFVLPSHSENFGIVVAEALACGTPVVTTDK----VPWQELIEY--GCGWVVD----- 329 (375)
T ss_pred cceEEEcCCCChHHHHHHHhhCCEEEeccccCCCCcHHHHHHhcCCCEEEcCC----CCHHHHhhc--CceEEeC-----
Confidence 56889999999654 5778884222232 224689999999999999753 333444433 6666554
Q ss_pred ccCHHHHHHHHHHHhcCC
Q 045267 416 IVGRDEIAKVVKALMEGE 433 (482)
Q Consensus 416 ~~~~~~l~~ai~~vl~~~ 433 (482)
.+.+++.++|.++++++
T Consensus 330 -~~~~~~~~~i~~l~~~~ 346 (375)
T cd03821 330 -DDVDALAAALRRALELP 346 (375)
T ss_pred -CChHHHHHHHHHHHhCH
Confidence 24499999999999886
No 70
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=98.72 E-value=3.8e-05 Score=77.99 Aligned_cols=112 Identities=12% Similarity=0.081 Sum_probs=75.1
Q ss_pred CCCeeeccccchh---hhhhccccccccc---ccC-chhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCC
Q 045267 341 GRGMLVPSWAPQA---QVLSHGSTGGFLC---HCG-WNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANE 413 (482)
Q Consensus 341 ~~~v~~~~~ipq~---~lL~~~~~~~~I~---HGG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 413 (482)
.+++.+.+++|+. +++..++ ++|. +.| -.++.||+++|+|+|+... ......+++ -+.|..++..
T Consensus 282 ~~~v~~~g~~~~~~~~~~l~~ad--~~v~ps~~E~~g~~~lEAma~G~Pvi~~~~----~~~~e~i~~-~~~g~~~~~~- 353 (405)
T TIGR03449 282 ADRVRFLPPRPPEELVHVYRAAD--VVAVPSYNESFGLVAMEAQACGTPVVAARV----GGLPVAVAD-GETGLLVDGH- 353 (405)
T ss_pred CceEEECCCCCHHHHHHHHHhCC--EEEECCCCCCcChHHHHHHHcCCCEEEecC----CCcHhhhcc-CCceEECCCC-
Confidence 3579999999864 4788899 6653 233 3589999999999998654 345556666 5677776543
Q ss_pred CCccCHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhh
Q 045267 414 NGIVGRDEIAKVVKALMEGEQ-GKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKWNN 472 (482)
Q Consensus 414 ~~~~~~~~l~~ai~~vl~~~~-~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~ 472 (482)
+.++++++|.++++++. .+.+++++++.. +.-+-+..++++.+.+.+
T Consensus 354 ----d~~~la~~i~~~l~~~~~~~~~~~~~~~~~--------~~fsw~~~~~~~~~~y~~ 401 (405)
T TIGR03449 354 ----DPADWADALARLLDDPRTRIRMGAAAVEHA--------AGFSWAATADGLLSSYRD 401 (405)
T ss_pred ----CHHHHHHHHHHHHhCHHHHHHHHHHHHHHH--------HhCCHHHHHHHHHHHHHH
Confidence 78999999999998762 123333333322 235556666666665544
No 71
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=98.72 E-value=3.2e-05 Score=79.42 Aligned_cols=112 Identities=12% Similarity=0.030 Sum_probs=73.7
Q ss_pred CCCeeeccccchhhh---hhcc----cccccccc----cCchhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeee
Q 045267 341 GRGMLVPSWAPQAQV---LSHG----STGGFLCH----CGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRP 409 (482)
Q Consensus 341 ~~~v~~~~~ipq~~l---L~~~----~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l 409 (482)
..++.+.+++++.++ +..+ + +||.. |=-.++.||+++|+|+|+-.. ..+...+.+ -..|..+
T Consensus 316 ~~~V~f~g~~~~~~~~~~~~~a~~~~D--v~v~pS~~E~fg~~~lEAma~G~PvV~s~~----gg~~eiv~~-~~~G~lv 388 (439)
T TIGR02472 316 YGKVAYPKHHRPDDVPELYRLAARSRG--IFVNPALTEPFGLTLLEAAACGLPIVATDD----GGPRDIIAN-CRNGLLV 388 (439)
T ss_pred CceEEecCCCCHHHHHHHHHHHhhcCC--EEecccccCCcccHHHHHHHhCCCEEEeCC----CCcHHHhcC-CCcEEEe
Confidence 456778888886654 5544 6 67653 334599999999999998754 345555666 4577777
Q ss_pred ccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Q 045267 410 KANENGIVGRDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKW 470 (482)
Q Consensus 410 ~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~ 470 (482)
+.. ++++++++|.++++|+ .. .+++++..++...+.-+-+..++++.+-+
T Consensus 389 ~~~-----d~~~la~~i~~ll~~~---~~---~~~~~~~a~~~~~~~fsw~~~~~~~~~l~ 438 (439)
T TIGR02472 389 DVL-----DLEAIASALEDALSDS---SQ---WQLWSRNGIEGVRRHYSWDAHVEKYLRIL 438 (439)
T ss_pred CCC-----CHHHHHHHHHHHHhCH---HH---HHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 653 7899999999999886 32 23344444333334556666666665543
No 72
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=98.70 E-value=1.7e-05 Score=78.57 Aligned_cols=109 Identities=13% Similarity=0.152 Sum_probs=69.1
Q ss_pred CCCeeecc-ccchh---hhhhcccccccc--cc----cCchhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeec
Q 045267 341 GRGMLVPS-WAPQA---QVLSHGSTGGFL--CH----CGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPK 410 (482)
Q Consensus 341 ~~~v~~~~-~ipq~---~lL~~~~~~~~I--~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~ 410 (482)
..++.+.+ |+|+. .++..++ ++| ++ |..+++.||+++|+|+|+.+..+ ...+.+ .+.|..++
T Consensus 246 ~~~v~~~~~~~~~~~~~~~~~~ad--~~v~ps~~e~~~~~~~~~Ea~a~G~PvI~~~~~~-----~~~i~~-~~~g~~~~ 317 (366)
T cd03822 246 ADRVIFINRYLPDEELPELFSAAD--VVVLPYRSADQTQSGVLAYAIGFGKPVISTPVGH-----AEEVLD-GGTGLLVP 317 (366)
T ss_pred CCcEEEecCcCCHHHHHHHHhhcC--EEEecccccccccchHHHHHHHcCCCEEecCCCC-----hheeee-CCCcEEEc
Confidence 45777765 48854 5777888 555 22 34568999999999999977544 334555 57777665
Q ss_pred cCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHH
Q 045267 411 ANENGIVGRDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASK 469 (482)
Q Consensus 411 ~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~ 469 (482)
.. +.+++++++.++++|+ +.+++ +++..++...+ -+-++.++++.+.
T Consensus 318 ~~-----d~~~~~~~l~~l~~~~---~~~~~---~~~~~~~~~~~-~s~~~~~~~~~~~ 364 (366)
T cd03822 318 PG-----DPAALAEAIRRLLADP---ELAQA---LRARAREYARA-MSWERVAERYLRL 364 (366)
T ss_pred CC-----CHHHHHHHHHHHHcCh---HHHHH---HHHHHHHHHhh-CCHHHHHHHHHHH
Confidence 43 6899999999999885 22222 22222222223 5555566665553
No 73
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=98.63 E-value=9.2e-06 Score=79.50 Aligned_cols=81 Identities=16% Similarity=0.110 Sum_probs=57.1
Q ss_pred CCCeeeccccch-hhhhhccccccccc--c--cCchhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCCCC
Q 045267 341 GRGMLVPSWAPQ-AQVLSHGSTGGFLC--H--CGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENG 415 (482)
Q Consensus 341 ~~~v~~~~~ipq-~~lL~~~~~~~~I~--H--GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~ 415 (482)
..++.+.++.+. .+++..++ ++|. + |.-+++.||+++|+|+|+... ......+++ -+.|...+.+
T Consensus 245 ~~~v~~~g~~~~~~~~~~~~d--~~i~ps~~e~~~~~~~Ea~~~G~PvI~~~~----~~~~e~i~~-~~~g~~~~~~--- 314 (353)
T cd03811 245 ADRVHFLGFQSNPYPYLKAAD--LFVLSSRYEGFPNVLLEAMALGTPVVATDC----PGPREILED-GENGLLVPVG--- 314 (353)
T ss_pred CccEEEecccCCHHHHHHhCC--EEEeCcccCCCCcHHHHHHHhCCCEEEcCC----CChHHHhcC-CCceEEECCC---
Confidence 457888888773 56888888 5552 2 345689999999999998543 366677777 7888877654
Q ss_pred ccCHHHH---HHHHHHHhcCC
Q 045267 416 IVGRDEI---AKVVKALMEGE 433 (482)
Q Consensus 416 ~~~~~~l---~~ai~~vl~~~ 433 (482)
+.+.+ .+++.+++.++
T Consensus 315 --~~~~~~~~~~~i~~~~~~~ 333 (353)
T cd03811 315 --DEAALAAAALALLDLLLDP 333 (353)
T ss_pred --CHHHHHHHHHHHHhccCCh
Confidence 56666 55565666554
No 74
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=98.63 E-value=3.8e-05 Score=75.98 Aligned_cols=81 Identities=12% Similarity=0.158 Sum_probs=59.7
Q ss_pred CCCeeeccccchhh---hhhccccccccc----------ccCchhHHHHhhcCCcEeeccccccchhhHHHHHhhcceee
Q 045267 341 GRGMLVPSWAPQAQ---VLSHGSTGGFLC----------HCGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLAL 407 (482)
Q Consensus 341 ~~~v~~~~~ipq~~---lL~~~~~~~~I~----------HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~ 407 (482)
.+++.+.+++|+.+ ++..++ ++|. -|.-+++.||+++|+|+|+.+.. .....+++ ...|.
T Consensus 235 ~~~v~~~g~~~~~~l~~~~~~ad--i~l~~s~~~~~~~~e~~~~~~~Ea~a~G~Pvi~~~~~----~~~~~i~~-~~~g~ 307 (355)
T cd03799 235 EDRVTLLGAKSQEEVRELLRAAD--LFVLPSVTAADGDREGLPVVLMEAMAMGLPVISTDVS----GIPELVED-GETGL 307 (355)
T ss_pred CCeEEECCcCChHHHHHHHHhCC--EEEecceecCCCCccCccHHHHHHHHcCCCEEecCCC----CcchhhhC-CCceE
Confidence 46899999998654 667788 5554 23357899999999999986543 23345555 45787
Q ss_pred eeccCCCCccCHHHHHHHHHHHhcCC
Q 045267 408 RPKANENGIVGRDEIAKVVKALMEGE 433 (482)
Q Consensus 408 ~l~~~~~~~~~~~~l~~ai~~vl~~~ 433 (482)
.++.. +.++++++|.+++.++
T Consensus 308 ~~~~~-----~~~~l~~~i~~~~~~~ 328 (355)
T cd03799 308 LVPPG-----DPEALADAIERLLDDP 328 (355)
T ss_pred EeCCC-----CHHHHHHHHHHHHhCH
Confidence 77542 7899999999999886
No 75
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=98.61 E-value=2.7e-05 Score=76.50 Aligned_cols=105 Identities=14% Similarity=0.127 Sum_probs=67.5
Q ss_pred CCCeeeccccchhh---hhhccccccccc--ccCc-hhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCCC
Q 045267 341 GRGMLVPSWAPQAQ---VLSHGSTGGFLC--HCGW-NSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANEN 414 (482)
Q Consensus 341 ~~~v~~~~~ipq~~---lL~~~~~~~~I~--HGG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~ 414 (482)
.+++.+.+++++.+ +++.+++-++-+ +-|. .++.||+++|+|+|+... ..+...+++ -..|...+
T Consensus 223 ~~~v~~~G~~~~~~~~~~~~~~d~~v~ps~~~E~~~~~~lEAma~G~PvI~~~~----~~~~e~i~~-~~~g~l~~---- 293 (335)
T cd03802 223 GPDIEYLGEVGGAEKAELLGNARALLFPILWEEPFGLVMIEAMACGTPVIAFRR----GAVPEVVED-GVTGFLVD---- 293 (335)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCcEEEeCCcccCCcchHHHHHHhcCCCEEEeCC----CCchhheeC-CCcEEEeC----
Confidence 47899999999754 678888433333 2343 489999999999998754 344445555 34676664
Q ss_pred CccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHH
Q 045267 415 GIVGRDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASK 469 (482)
Q Consensus 415 ~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~ 469 (482)
..+++++++.+++..+ ++++++. +. +.-+.+..++++++.
T Consensus 294 ---~~~~l~~~l~~l~~~~-----~~~~~~~---~~----~~~s~~~~~~~~~~~ 333 (335)
T cd03802 294 ---SVEELAAAVARADRLD-----RAACRRR---AE----RRFSAARMVDDYLAL 333 (335)
T ss_pred ---CHHHHHHHHHHHhccH-----HHHHHHH---HH----HhCCHHHHHHHHHHH
Confidence 2799999999887542 2233222 22 345666666666553
No 76
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=98.60 E-value=5e-05 Score=75.74 Aligned_cols=81 Identities=17% Similarity=0.120 Sum_probs=62.3
Q ss_pred CCCeeeccccchhh---hhhcccccccccc----------cCchhHHHHhhcCCcEeeccccccchhhHHHHHhhcceee
Q 045267 341 GRGMLVPSWAPQAQ---VLSHGSTGGFLCH----------CGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLAL 407 (482)
Q Consensus 341 ~~~v~~~~~ipq~~---lL~~~~~~~~I~H----------GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~ 407 (482)
..++.+.+++|+++ ++..++ ++|.- |-.+++.||+++|+|+|+-+.. .+...+.+ .+.|.
T Consensus 244 ~~~v~~~g~~~~~~l~~~~~~ad--~~v~ps~~~~~~~~E~~~~~~~EA~a~G~PvI~s~~~----~~~e~i~~-~~~g~ 316 (367)
T cd05844 244 GGRVTFLGAQPHAEVRELMRRAR--IFLQPSVTAPSGDAEGLPVVLLEAQASGVPVVATRHG----GIPEAVED-GETGL 316 (367)
T ss_pred CCeEEECCCCCHHHHHHHHHhCC--EEEECcccCCCCCccCCchHHHHHHHcCCCEEEeCCC----Cchhheec-CCeeE
Confidence 46788999998655 588888 55531 3357899999999999987653 46666677 67888
Q ss_pred eeccCCCCccCHHHHHHHHHHHhcCC
Q 045267 408 RPKANENGIVGRDEIAKVVKALMEGE 433 (482)
Q Consensus 408 ~l~~~~~~~~~~~~l~~ai~~vl~~~ 433 (482)
.++. -+.+++++++.+++.|+
T Consensus 317 ~~~~-----~d~~~l~~~i~~l~~~~ 337 (367)
T cd05844 317 LVPE-----GDVAALAAALGRLLADP 337 (367)
T ss_pred EECC-----CCHHHHHHHHHHHHcCH
Confidence 7764 36799999999999886
No 77
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=98.59 E-value=1.7e-05 Score=79.23 Aligned_cols=145 Identities=15% Similarity=0.184 Sum_probs=86.1
Q ss_pred EEEEeccCCCCCCHHHHHHHHHHHHhcCCce-EEEEeCCCCCCCCcccccCCCCCCCCCCchhHHhhh----cCCCeeec
Q 045267 273 VLFVSFGSGGTLSCEQLNELALGLEMSEQRF-LWVVRSPNNAANSTFFSVNSHKDPYDFLPKGFLDRT----KGRGMLVP 347 (482)
Q Consensus 273 ~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~----~~~~v~~~ 347 (482)
.+++..|.+.......+..+++++......+ ++.+|.+.. . +.+.+.. ...++.+.
T Consensus 181 ~~i~~~Grl~~~~~k~~~~l~~a~~~~~~~~~l~ivG~g~~---------------~----~~l~~~~~~~~l~~~v~f~ 241 (359)
T PRK09922 181 AVFLYVGRLKFEGQKNVKELFDGLSQTTGEWQLHIIGDGSD---------------F----EKCKAYSRELGIEQRIIWH 241 (359)
T ss_pred cEEEEEEEEecccCcCHHHHHHHHHhhCCCeEEEEEeCCcc---------------H----HHHHHHHHHcCCCCeEEEe
Confidence 5556667654333445667777877664333 333333211 0 2222222 24688899
Q ss_pred cccch--hh---hhhccccccccc--c--cCchhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCCCCccC
Q 045267 348 SWAPQ--AQ---VLSHGSTGGFLC--H--CGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENGIVG 418 (482)
Q Consensus 348 ~~ipq--~~---lL~~~~~~~~I~--H--GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~ 418 (482)
+|+++ .. .+..++ ++|. + |--.++.||+++|+|+|+.-. .......+++ -..|..++. -+
T Consensus 242 G~~~~~~~~~~~~~~~~d--~~v~~s~~Egf~~~~lEAma~G~Pvv~s~~---~~g~~eiv~~-~~~G~lv~~-----~d 310 (359)
T PRK09922 242 GWQSQPWEVVQQKIKNVS--ALLLTSKFEGFPMTLLEAMSYGIPCISSDC---MSGPRDIIKP-GLNGELYTP-----GN 310 (359)
T ss_pred cccCCcHHHHHHHHhcCc--EEEECCcccCcChHHHHHHHcCCCEEEeCC---CCChHHHccC-CCceEEECC-----CC
Confidence 98853 22 344567 5553 3 335799999999999998741 2223345555 456777654 38
Q ss_pred HHHHHHHHHHHhcCCc---hHHHHHHHHHHHH
Q 045267 419 RDEIAKVVKALMEGEQ---GKEVRNKMKDLKD 447 (482)
Q Consensus 419 ~~~l~~ai~~vl~~~~---~~~~r~~a~~l~~ 447 (482)
.++++++|.++++|++ .+..+++++++.+
T Consensus 311 ~~~la~~i~~l~~~~~~~~~~~~~~~~~~~~~ 342 (359)
T PRK09922 311 IDEFVGKLNKVISGEVKYQHDAIPNSIERFYE 342 (359)
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHHHHhhH
Confidence 8999999999999984 1234444444443
No 78
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=98.57 E-value=7.7e-05 Score=73.91 Aligned_cols=96 Identities=8% Similarity=-0.007 Sum_probs=63.2
Q ss_pred CCCeeeccccc-hhhhhhccccccccc--ccC-chhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCCCCc
Q 045267 341 GRGMLVPSWAP-QAQVLSHGSTGGFLC--HCG-WNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENGI 416 (482)
Q Consensus 341 ~~~v~~~~~ip-q~~lL~~~~~~~~I~--HGG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~ 416 (482)
..++.+.+|.+ ...++..+++-++-+ +-| .+++.||+++|+|+|+.. -..+...+.+ -+.|..++.
T Consensus 245 ~~~v~~~g~~~~~~~~l~~ad~~i~ps~~~e~~~~~l~EA~a~G~PvI~~~----~~~~~e~i~~-~~~g~~~~~----- 314 (355)
T cd03819 245 QDRVTFVGHCSDMPAAYALADIVVSASTEPEAFGRTAVEAQAMGRPVIASD----HGGARETVRP-GETGLLVPP----- 314 (355)
T ss_pred cceEEEcCCcccHHHHHHhCCEEEecCCCCCCCchHHHHHHhcCCCEEEcC----CCCcHHHHhC-CCceEEeCC-----
Confidence 45788888855 456888899533333 223 359999999999999864 3445556666 567877764
Q ss_pred cCHHHHHHHHHHHhc-CCc-hHHHHHHHHHHH
Q 045267 417 VGRDEIAKVVKALME-GEQ-GKEVRNKMKDLK 446 (482)
Q Consensus 417 ~~~~~l~~ai~~vl~-~~~-~~~~r~~a~~l~ 446 (482)
-+.+.++++|..++. +++ .+++++++++..
T Consensus 315 ~~~~~l~~~i~~~~~~~~~~~~~~~~~a~~~~ 346 (355)
T cd03819 315 GDAEALAQALDQILSLLPEGRAKMFAKARMCV 346 (355)
T ss_pred CCHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH
Confidence 378999999976664 442 223444444443
No 79
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.56 E-value=8.4e-06 Score=82.62 Aligned_cols=111 Identities=22% Similarity=0.202 Sum_probs=71.6
Q ss_pred cCCCeeeccccch-hhhhhcccccccc--cc--cCch-hHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCC
Q 045267 340 KGRGMLVPSWAPQ-AQVLSHGSTGGFL--CH--CGWN-SVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANE 413 (482)
Q Consensus 340 ~~~~v~~~~~ipq-~~lL~~~~~~~~I--~H--GG~g-s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 413 (482)
..++|.+.+++++ ..++..++ ++| ++ .|.+ .+.||+++|+|+|+.+...+. ..+. .|.|..+. .
T Consensus 278 ~~~~V~~~G~v~~~~~~~~~ad--v~v~Ps~~~eG~~~~~lEAma~G~PVV~t~~~~~~-----i~~~-~~~g~lv~--~ 347 (397)
T TIGR03087 278 ALPGVTVTGSVADVRPYLAHAA--VAVAPLRIARGIQNKVLEAMAMAKPVVASPEAAEG-----IDAL-PGAELLVA--A 347 (397)
T ss_pred cCCCeEEeeecCCHHHHHHhCC--EEEecccccCCcccHHHHHHHcCCCEEecCccccc-----cccc-CCcceEeC--C
Confidence 4568889999984 56788899 554 32 4544 699999999999998754322 1123 46676664 2
Q ss_pred CCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Q 045267 414 NGIVGRDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKW 470 (482)
Q Consensus 414 ~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~ 470 (482)
++++++++|.++++|+ +.+++ +++..++...+.-+-+..++++.+.+
T Consensus 348 ----~~~~la~ai~~ll~~~---~~~~~---~~~~ar~~v~~~fsw~~~~~~~~~~l 394 (397)
T TIGR03087 348 ----DPADFAAAILALLANP---AEREE---LGQAARRRVLQHYHWPRNLARLDALL 394 (397)
T ss_pred ----CHHHHHHHHHHHHcCH---HHHHH---HHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 7899999999999886 32222 22222222224456666666665543
No 80
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=98.53 E-value=4.9e-05 Score=74.44 Aligned_cols=98 Identities=18% Similarity=0.145 Sum_probs=70.9
Q ss_pred Ceeeccccc-hhhhhhcccccc-----cccccCchhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCCCCc
Q 045267 343 GMLVPSWAP-QAQVLSHGSTGG-----FLCHCGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENGI 416 (482)
Q Consensus 343 ~v~~~~~ip-q~~lL~~~~~~~-----~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~ 416 (482)
+|.+.|-+= ...+++-+++ + ++-+||+| ..|++++|+|+|.=|+..-|.+.++++.+ .|.|+.++
T Consensus 301 dV~l~DtmGEL~l~y~~adi-AFVGGSlv~~GGHN-~LEpa~~~~pvi~Gp~~~Nf~ei~~~l~~-~ga~~~v~------ 371 (419)
T COG1519 301 DVLLGDTMGELGLLYGIADI-AFVGGSLVPIGGHN-PLEPAAFGTPVIFGPYTFNFSDIAERLLQ-AGAGLQVE------ 371 (419)
T ss_pred cEEEEecHhHHHHHHhhccE-EEECCcccCCCCCC-hhhHHHcCCCEEeCCccccHHHHHHHHHh-cCCeEEEC------
Confidence 444545443 3334444443 3 34589988 67999999999999999999999999999 99999996
Q ss_pred cCHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHH
Q 045267 417 VGRDEIAKVVKALMEGEQ-GKEVRNKMKDLKDAAA 450 (482)
Q Consensus 417 ~~~~~l~~ai~~vl~~~~-~~~~r~~a~~l~~~~~ 450 (482)
+++.|.+++..+++|++ .+.|.+++.++-+..+
T Consensus 372 -~~~~l~~~v~~l~~~~~~r~~~~~~~~~~v~~~~ 405 (419)
T COG1519 372 -DADLLAKAVELLLADEDKREAYGRAGLEFLAQNR 405 (419)
T ss_pred -CHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhh
Confidence 35889999998888763 2344444444444443
No 81
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing. This family of enzymes catalyzes the combined epimerization and UDP-hydrolysis of UDP-N-acetylglucosamine to N-acetylmannosamine. This is in contrast to the related enzyme WecB (TIGR00236) which retains the UDP moiety. NeuC acts in concert with NeuA and NeuB to synthesize CMP-N5-acetyl-neuraminate.
Probab=98.50 E-value=3.1e-05 Score=77.35 Aligned_cols=129 Identities=13% Similarity=0.160 Sum_probs=79.5
Q ss_pred CcEEEEeccCC---CCCCHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCcccccCCCCCCCCCCchhHHhhhc-CCCeee
Q 045267 271 GSVLFVSFGSG---GTLSCEQLNELALGLEMSEQRFLWVVRSPNNAANSTFFSVNSHKDPYDFLPKGFLDRTK-GRGMLV 346 (482)
Q Consensus 271 ~~~v~vs~GS~---~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~-~~~v~~ 346 (482)
++.++|++=-. .....+.+..+++++...+.++++....+... ...+-+.+.+... .+|+.+
T Consensus 201 ~~~vlvt~Hp~~~~~~~~~~~l~~li~~L~~~~~~~~vi~P~~~p~--------------~~~i~~~i~~~~~~~~~v~l 266 (365)
T TIGR03568 201 KPYALVTFHPVTLEKESAEEQIKELLKALDELNKNYIFTYPNADAG--------------SRIINEAIEEYVNEHPNFRL 266 (365)
T ss_pred CCEEEEEeCCCcccccCchHHHHHHHHHHHHhccCCEEEEeCCCCC--------------chHHHHHHHHHhcCCCCEEE
Confidence 45888887543 22345678889999988876666665432110 0001111222112 357887
Q ss_pred ccccc---hhhhhhcccccccccccCchhHHHHhhcCCcEeeccccccchhhHHHHHhhccee-eeeccCCCCccCHHHH
Q 045267 347 PSWAP---QAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLA-LRPKANENGIVGRDEI 422 (482)
Q Consensus 347 ~~~ip---q~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G-~~l~~~~~~~~~~~~l 422 (482)
.+-++ ...++.+++ ++|+-.+.|- .||.+.|+|.|.+- +.+ .-+ + .|.. +.+. .++++|
T Consensus 267 ~~~l~~~~~l~Ll~~a~--~vitdSSggi-~EA~~lg~Pvv~l~---~R~---e~~-~-~g~nvl~vg------~~~~~I 329 (365)
T TIGR03568 267 FKSLGQERYLSLLKNAD--AVIGNSSSGI-IEAPSFGVPTINIG---TRQ---KGR-L-RADSVIDVD------PDKEEI 329 (365)
T ss_pred ECCCChHHHHHHHHhCC--EEEEcChhHH-HhhhhcCCCEEeec---CCc---hhh-h-hcCeEEEeC------CCHHHH
Confidence 76655 456888999 9998886555 99999999999774 211 111 2 2332 2232 578999
Q ss_pred HHHHHHHh
Q 045267 423 AKVVKALM 430 (482)
Q Consensus 423 ~~ai~~vl 430 (482)
.+++.+++
T Consensus 330 ~~a~~~~~ 337 (365)
T TIGR03568 330 VKAIEKLL 337 (365)
T ss_pred HHHHHHHh
Confidence 99999965
No 82
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=98.43 E-value=0.00038 Score=76.68 Aligned_cols=94 Identities=17% Similarity=0.172 Sum_probs=62.7
Q ss_pred CCCeeeccccchhh---hhhccc--ccccccc---cCc-hhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeecc
Q 045267 341 GRGMLVPSWAPQAQ---VLSHGS--TGGFLCH---CGW-NSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKA 411 (482)
Q Consensus 341 ~~~v~~~~~ipq~~---lL~~~~--~~~~I~H---GG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~ 411 (482)
..+|.+.+++++.+ ++..++ ..+||.- =|+ .++.||+++|+|+|+-... .....++. -.-|+.++.
T Consensus 547 ~g~V~FlG~v~~edvp~lYr~Ad~s~DVFV~PS~~EgFGLvlLEAMAcGlPVVASdvG----G~~EII~~-g~nGlLVdP 621 (1050)
T TIGR02468 547 YGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAHGLPMVATKNG----GPVDIHRV-LDNGLLVDP 621 (1050)
T ss_pred CCeEEecCCCCHHHHHHHHHHhhhcCCeeeCCcccCCCCHHHHHHHHhCCCEEEeCCC----CcHHHhcc-CCcEEEECC
Confidence 45678888988765 444441 1266653 343 4899999999999998543 34445555 456777765
Q ss_pred CCCCccCHHHHHHHHHHHhcCCc-hHHHHHHHHH
Q 045267 412 NENGIVGRDEIAKVVKALMEGEQ-GKEVRNKMKD 444 (482)
Q Consensus 412 ~~~~~~~~~~l~~ai~~vl~~~~-~~~~r~~a~~ 444 (482)
-+++.|+++|.++++|++ -+.+.+++++
T Consensus 622 -----~D~eaLA~AL~~LL~Dpelr~~m~~~gr~ 650 (1050)
T TIGR02468 622 -----HDQQAIADALLKLVADKQLWAECRQNGLK 650 (1050)
T ss_pred -----CCHHHHHHHHHHHhhCHHHHHHHHHHHHH
Confidence 378999999999999873 2334444443
No 83
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=98.42 E-value=0.00045 Score=67.96 Aligned_cols=108 Identities=15% Similarity=0.130 Sum_probs=68.4
Q ss_pred CCeeeccccc-hhhhhhcccccccccccC----chhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCCCCc
Q 045267 342 RGMLVPSWAP-QAQVLSHGSTGGFLCHCG----WNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENGI 416 (482)
Q Consensus 342 ~~v~~~~~ip-q~~lL~~~~~~~~I~HGG----~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~ 416 (482)
.++.+.+... ...++..++ ++|.... -+++.||+++|+|+|+.. ...+...+.+ .|..++.
T Consensus 251 ~~v~~~g~~~~~~~~~~~ad--i~v~ps~~e~~~~~~~Ea~a~g~PvI~~~----~~~~~e~~~~---~g~~~~~----- 316 (365)
T cd03807 251 DKVILLGERSDVPALLNALD--VFVLSSLSEGFPNVLLEAMACGLPVVATD----VGDNAELVGD---TGFLVPP----- 316 (365)
T ss_pred ceEEEccccccHHHHHHhCC--EEEeCCccccCCcHHHHHHhcCCCEEEcC----CCChHHHhhc---CCEEeCC-----
Confidence 4566655444 456888899 6775443 479999999999999854 3444444444 3444433
Q ss_pred cCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHH
Q 045267 417 VGRDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASK 469 (482)
Q Consensus 417 ~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~ 469 (482)
-+.+++++++.+++++++ .+++..+...+.++ +.-+-.+.++.+.+-
T Consensus 317 ~~~~~l~~~i~~l~~~~~--~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~ 363 (365)
T cd03807 317 GDPEALAEAIEALLADPA--LRQALGEAARERIE----ENFSIEAMVEAYEEL 363 (365)
T ss_pred CCHHHHHHHHHHHHhChH--HHHHHHHHHHHHHH----HhCCHHHHHHHHHHH
Confidence 368999999999998861 23333333333333 456666666666553
No 84
>KOG3349 consensus Predicted glycosyltransferase [General function prediction only]
Probab=98.39 E-value=1.4e-06 Score=72.07 Aligned_cols=121 Identities=17% Similarity=0.172 Sum_probs=83.3
Q ss_pred EEEEeccCCCCCC---HHHHHHHHHHHHhcCC-ceEEEEeCCCCCCCCcccccCCCCCCCCCCchhHHh--hhcCCCeee
Q 045267 273 VLFVSFGSGGTLS---CEQLNELALGLEMSEQ-RFLWVVRSPNNAANSTFFSVNSHKDPYDFLPKGFLD--RTKGRGMLV 346 (482)
Q Consensus 273 ~v~vs~GS~~~~~---~~~~~~~~~al~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~--~~~~~~v~~ 346 (482)
.+|||-||-.+.+ .-.-.+..+.|...|. +.+.+++.+.. . .++.... +..+-.+..
T Consensus 5 ~vFVTVGtT~Fd~LI~~Vl~~~~~~~L~k~G~~kLiiQ~Grg~~---------------~--~~d~~~~~~k~~gl~id~ 67 (170)
T KOG3349|consen 5 TVFVTVGTTSFDDLISCVLSEEFLQELQKRGFTKLIIQIGRGQP---------------F--FGDPIDLIRKNGGLTIDG 67 (170)
T ss_pred EEEEEeccccHHHHHHHHcCHHHHHHHHHcCccEEEEEecCCcc---------------C--CCCHHHhhcccCCeEEEE
Confidence 8999999964322 1113346667777775 77888887521 0 1111110 112223445
Q ss_pred ccccch-hhhhhcccccccccccCchhHHHHhhcCCcEeeccc----cccchhhHHHHHhhcceeeeeccCC
Q 045267 347 PSWAPQ-AQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAWPL----YAEQKMNAVILTEDVKLALRPKANE 413 (482)
Q Consensus 347 ~~~ipq-~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~----~~DQ~~na~rv~~~~G~G~~l~~~~ 413 (482)
.+|-|- .+....++ ++|.|+|+||+.|.|..|+|.|+++- -..|-..|..+++ .|.=..-...+
T Consensus 68 y~f~psl~e~I~~Ad--lVIsHAGaGS~letL~l~KPlivVvNd~LMDNHQ~ELA~qL~~-egyL~~C~ps~ 136 (170)
T KOG3349|consen 68 YDFSPSLTEDIRSAD--LVISHAGAGSCLETLRLGKPLIVVVNDSLMDNHQLELAKQLAE-EGYLYYCTPST 136 (170)
T ss_pred EecCccHHHHHhhcc--EEEecCCcchHHHHHHcCCCEEEEeChHhhhhHHHHHHHHHHh-cCcEEEeeccc
Confidence 577773 66677799 99999999999999999999999994 5689999999999 88777665543
No 85
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=98.38 E-value=0.00015 Score=71.89 Aligned_cols=110 Identities=11% Similarity=0.093 Sum_probs=71.0
Q ss_pred CCCeeeccccch-hhhhhcccccccccc----cCchhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCCCC
Q 045267 341 GRGMLVPSWAPQ-AQVLSHGSTGGFLCH----CGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENG 415 (482)
Q Consensus 341 ~~~v~~~~~ipq-~~lL~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~ 415 (482)
..++.+.++..+ ..++..++ ++|.- |..+++.||+++|+|+|+. |...+...+++ .|.....
T Consensus 244 ~~~v~~~g~~~~~~~~~~~ad--~~v~~s~~e~~~~~~~Ea~a~G~PvI~~----~~~~~~e~i~~-~g~~~~~------ 310 (360)
T cd04951 244 SNRVKLLGLRDDIAAYYNAAD--LFVLSSAWEGFGLVVAEAMACELPVVAT----DAGGVREVVGD-SGLIVPI------ 310 (360)
T ss_pred CCcEEEecccccHHHHHHhhc--eEEecccccCCChHHHHHHHcCCCEEEe----cCCChhhEecC-CceEeCC------
Confidence 357878887753 56888888 44432 2356899999999999974 55556666666 5554432
Q ss_pred ccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Q 045267 416 IVGRDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKW 470 (482)
Q Consensus 416 ~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~ 470 (482)
-+.+++++++.+++.++. .+++...+-++... +.-+.+..++++.+.+
T Consensus 311 -~~~~~~~~~i~~ll~~~~--~~~~~~~~~~~~~~----~~~s~~~~~~~~~~~y 358 (360)
T cd04951 311 -SDPEALANKIDEILKMSG--EERDIIGARRERIV----KKFSINSIVQQWLTLY 358 (360)
T ss_pred -CCHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHH----HhcCHHHHHHHHHHHh
Confidence 378999999999985431 44443333333333 4566666666666544
No 86
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=98.37 E-value=0.00056 Score=67.85 Aligned_cols=108 Identities=20% Similarity=0.220 Sum_probs=64.9
Q ss_pred CCCeeeccccchhh---hhhccccccccccc----Cc-hhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccC
Q 045267 341 GRGMLVPSWAPQAQ---VLSHGSTGGFLCHC----GW-NSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKAN 412 (482)
Q Consensus 341 ~~~v~~~~~ipq~~---lL~~~~~~~~I~HG----G~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~ 412 (482)
.++|.+.+++|+.+ ++..++ +++-+. |. +++.||+++|+|+|+....+. ...+++ . |...+..
T Consensus 247 ~~~V~~~g~~~~~~~~~~~~~ad--~~v~ps~~~e~~~~~~~EAma~G~PvI~s~~~~~----~e~~~~-~--g~~~~~~ 317 (363)
T cd04955 247 DPRIIFVGPIYDQELLELLRYAA--LFYLHGHSVGGTNPSLLEAMAYGCPVLASDNPFN----REVLGD-K--AIYFKVG 317 (363)
T ss_pred CCcEEEccccChHHHHHHHHhCC--EEEeCCccCCCCChHHHHHHHcCCCEEEecCCcc----ceeecC-C--eeEecCc
Confidence 56899999999865 566677 444433 22 479999999999998754321 112222 2 2333222
Q ss_pred CCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Q 045267 413 ENGIVGRDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKW 470 (482)
Q Consensus 413 ~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~ 470 (482)
+.+++++.++++++ +.++ ++++..++...+.-+.+..++++.+.+
T Consensus 318 -------~~l~~~i~~l~~~~---~~~~---~~~~~~~~~~~~~fs~~~~~~~~~~~y 362 (363)
T cd04955 318 -------DDLASLLEELEADP---EEVS---AMAKAARERIREKYTWEKIADQYEELY 362 (363)
T ss_pred -------hHHHHHHHHHHhCH---HHHH---HHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 12999999999885 2222 233333332224566667777776643
No 87
>PLN02275 transferase, transferring glycosyl groups
Probab=98.37 E-value=0.00095 Score=66.97 Aligned_cols=75 Identities=17% Similarity=0.205 Sum_probs=53.5
Q ss_pred CCeeecc-ccchhh---hhhccccccccc-c-----cC-chhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeec
Q 045267 342 RGMLVPS-WAPQAQ---VLSHGSTGGFLC-H-----CG-WNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPK 410 (482)
Q Consensus 342 ~~v~~~~-~ipq~~---lL~~~~~~~~I~-H-----GG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~ 410 (482)
.|+.+.. |+|+.+ +++.+| ++|. + -| -+++.||+++|+|+|+... ..+...+++ -+.|..++
T Consensus 286 ~~v~~~~~~~~~~~~~~~l~~aD--v~v~~~~s~~~e~~p~~llEAmA~G~PVVa~~~----gg~~eiv~~-g~~G~lv~ 358 (371)
T PLN02275 286 RHVAFRTMWLEAEDYPLLLGSAD--LGVSLHTSSSGLDLPMKVVDMFGCGLPVCAVSY----SCIGELVKD-GKNGLLFS 358 (371)
T ss_pred CceEEEcCCCCHHHHHHHHHhCC--EEEEeccccccccccHHHHHHHHCCCCEEEecC----CChHHHccC-CCCeEEEC
Confidence 4566544 788755 488999 6652 1 12 3479999999999999743 346667777 67888874
Q ss_pred cCCCCccCHHHHHHHHHHHh
Q 045267 411 ANENGIVGRDEIAKVVKALM 430 (482)
Q Consensus 411 ~~~~~~~~~~~l~~ai~~vl 430 (482)
++++++++|.++|
T Consensus 359 -------~~~~la~~i~~l~ 371 (371)
T PLN02275 359 -------SSSELADQLLELL 371 (371)
T ss_pred -------CHHHHHHHHHHhC
Confidence 3688999988764
No 88
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=98.33 E-value=0.00068 Score=67.94 Aligned_cols=113 Identities=14% Similarity=0.141 Sum_probs=74.1
Q ss_pred CCeeeccccc-hhhhhhcccccccc--cc--cCchhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCCCCc
Q 045267 342 RGMLVPSWAP-QAQVLSHGSTGGFL--CH--CGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENGI 416 (482)
Q Consensus 342 ~~v~~~~~ip-q~~lL~~~~~~~~I--~H--GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~ 416 (482)
.++.+.++.. -..++..++ ++| ++ |--.++.||+++|+|+|+-.. ..+...+++ -..|..++..
T Consensus 255 ~~v~~~g~~~~~~~~~~~ad--i~v~pS~~Eg~~~~~lEAma~G~Pvv~s~~----~g~~e~i~~-~~~g~~~~~~---- 323 (374)
T TIGR03088 255 HLVWLPGERDDVPALMQALD--LFVLPSLAEGISNTILEAMASGLPVIATAV----GGNPELVQH-GVTGALVPPG---- 323 (374)
T ss_pred ceEEEcCCcCCHHHHHHhcC--EEEeccccccCchHHHHHHHcCCCEEEcCC----CCcHHHhcC-CCceEEeCCC----
Confidence 4555655544 356788999 555 33 445699999999999999654 345556666 5667777643
Q ss_pred cCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhh
Q 045267 417 VGRDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKWNN 472 (482)
Q Consensus 417 ~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~ 472 (482)
+.++++++|.++++++ +.++ ++++..++...+.-+.+..++++.+.+++
T Consensus 324 -d~~~la~~i~~l~~~~---~~~~---~~~~~a~~~~~~~fs~~~~~~~~~~~y~~ 372 (374)
T TIGR03088 324 -DAVALARALQPYVSDP---AARR---AHGAAGRARAEQQFSINAMVAAYAGLYDQ 372 (374)
T ss_pred -CHHHHHHHHHHHHhCH---HHHH---HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 6899999999999875 3222 23333333333456777777777765543
No 89
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=98.33 E-value=0.00034 Score=69.36 Aligned_cols=80 Identities=15% Similarity=0.104 Sum_probs=55.9
Q ss_pred CCCeeeccccch-hhhhhcccccccccc----cCchhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCCCC
Q 045267 341 GRGMLVPSWAPQ-AQVLSHGSTGGFLCH----CGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENG 415 (482)
Q Consensus 341 ~~~v~~~~~ipq-~~lL~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~ 415 (482)
..++.+.++..+ .+++..++ ++|+- |-..++.||+++|+|+|+-...+ ....+++ +.|.... .
T Consensus 248 ~~~v~~~g~~~~~~~~~~~ad--i~v~ps~~E~~~~~~lEAma~G~PvI~s~~~~----~~~~i~~--~~~~~~~-~--- 315 (358)
T cd03812 248 EDKVIFLGVRNDVPELLQAMD--VFLFPSLYEGLPLVLIEAQASGLPCILSDTIT----KEVDLTD--LVKFLSL-D--- 315 (358)
T ss_pred CCcEEEecccCCHHHHHHhcC--EEEecccccCCCHHHHHHHHhCCCEEEEcCCc----hhhhhcc--CccEEeC-C---
Confidence 457777787443 66888888 55532 45679999999999999865443 3333444 4444332 2
Q ss_pred ccCHHHHHHHHHHHhcCC
Q 045267 416 IVGRDEIAKVVKALMEGE 433 (482)
Q Consensus 416 ~~~~~~l~~ai~~vl~~~ 433 (482)
-++++++++|.+++.|+
T Consensus 316 -~~~~~~a~~i~~l~~~~ 332 (358)
T cd03812 316 -ESPEIWAEEILKLKSED 332 (358)
T ss_pred -CCHHHHHHHHHHHHhCc
Confidence 36799999999999998
No 90
>PF02350 Epimerase_2: UDP-N-acetylglucosamine 2-epimerase; InterPro: IPR003331 UDP-N-acetylglucosamine 2-epimerase 5.1.3.14 from EC catalyses the production of UDP-ManNAc from UDP-GlcNAc. Some of the enzymes is this family are bifunctional. In microorganisms the epimerase is involved in in the synthesis of the capsule precursor UDP-ManNAcA [, ]. The protein from rat liver displays both epimerase and kinase activity [].; GO: 0008761 UDP-N-acetylglucosamine 2-epimerase activity, 0006047 UDP-N-acetylglucosamine metabolic process, 0009103 lipopolysaccharide biosynthetic process; PDB: 1V4V_B 3BEO_B 3DZC_B 3OT5_B 1O6C_B 1VGV_D 1F6D_C.
Probab=98.32 E-value=7.3e-06 Score=80.99 Aligned_cols=131 Identities=8% Similarity=0.042 Sum_probs=75.5
Q ss_pred CCCcEEEEeccCCCCCC-H---HHHHHHHHHHHhc-CCceEEEEeCCCCCCCCcccccCCCCCCCCCCchhHHhhhcC-C
Q 045267 269 PLGSVLFVSFGSGGTLS-C---EQLNELALGLEMS-EQRFLWVVRSPNNAANSTFFSVNSHKDPYDFLPKGFLDRTKG-R 342 (482)
Q Consensus 269 ~~~~~v~vs~GS~~~~~-~---~~~~~~~~al~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~-~ 342 (482)
.+++.++|++=...... + ..+..+++++... +.++||.+..... .-..+.+.... +
T Consensus 178 ~~~~~iLvt~H~~t~~~~~~~~~~i~~~l~~L~~~~~~~vi~~~hn~p~------------------~~~~i~~~l~~~~ 239 (346)
T PF02350_consen 178 APKPYILVTLHPVTNEDNPERLEQILEALKALAERQNVPVIFPLHNNPR------------------GSDIIIEKLKKYD 239 (346)
T ss_dssp TTSEEEEEE-S-CCCCTHH--HHHHHHHHHHHHHHTTEEEEEE--S-HH------------------HHHHHHHHHTT-T
T ss_pred cCCCEEEEEeCcchhcCChHHHHHHHHHHHHHHhcCCCcEEEEecCCch------------------HHHHHHHHhcccC
Confidence 45679999985554444 3 3455566666666 5678888763211 00122222221 4
Q ss_pred Ceeeccccch---hhhhhcccccccccccCchhHH-HHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCCCCccC
Q 045267 343 GMLVPSWAPQ---AQVLSHGSTGGFLCHCGWNSVL-ESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENGIVG 418 (482)
Q Consensus 343 ~v~~~~~ipq---~~lL~~~~~~~~I~HGG~gs~~-eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~ 418 (482)
|+++...+++ ..+|.+++ ++|+..| +++ ||.++|+|.|.+ .|+...=.-+. .|..+-+. .+
T Consensus 240 ~v~~~~~l~~~~~l~ll~~a~--~vvgdSs--GI~eEa~~lg~P~v~i---R~~geRqe~r~--~~~nvlv~------~~ 304 (346)
T PF02350_consen 240 NVRLIEPLGYEEYLSLLKNAD--LVVGDSS--GIQEEAPSLGKPVVNI---RDSGERQEGRE--RGSNVLVG------TD 304 (346)
T ss_dssp TEEEE----HHHHHHHHHHES--EEEESSH--HHHHHGGGGT--EEEC---SSS-S-HHHHH--TTSEEEET------SS
T ss_pred CEEEECCCCHHHHHHHHhcce--EEEEcCc--cHHHHHHHhCCeEEEe---cCCCCCHHHHh--hcceEEeC------CC
Confidence 8888777764 55888999 9999999 555 999999999999 23222222222 24444443 58
Q ss_pred HHHHHHHHHHHhcC
Q 045267 419 RDEIAKVVKALMEG 432 (482)
Q Consensus 419 ~~~l~~ai~~vl~~ 432 (482)
+++|.+++.+++.+
T Consensus 305 ~~~I~~ai~~~l~~ 318 (346)
T PF02350_consen 305 PEAIIQAIEKALSD 318 (346)
T ss_dssp HHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhC
Confidence 89999999999976
No 91
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=98.29 E-value=0.00069 Score=68.83 Aligned_cols=114 Identities=15% Similarity=0.170 Sum_probs=76.6
Q ss_pred CCCeeeccccchhh---hhhccccccccc--c-------cCc-hhHHHHhhcCCcEeeccccccchhhHHHHHhhcceee
Q 045267 341 GRGMLVPSWAPQAQ---VLSHGSTGGFLC--H-------CGW-NSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLAL 407 (482)
Q Consensus 341 ~~~v~~~~~ipq~~---lL~~~~~~~~I~--H-------GG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~ 407 (482)
.+++.+.+|+|+.+ ++..++ ++|. + -|. +++.||+++|+|+|+-.. ......+++ -..|.
T Consensus 278 ~~~V~~~G~~~~~el~~~l~~aD--v~v~pS~~~~~g~~Eg~p~~llEAma~G~PVI~t~~----~g~~E~v~~-~~~G~ 350 (406)
T PRK15427 278 EDVVEMPGFKPSHEVKAMLDDAD--VFLLPSVTGADGDMEGIPVALMEAMAVGIPVVSTLH----SGIPELVEA-DKSGW 350 (406)
T ss_pred CCeEEEeCCCCHHHHHHHHHhCC--EEEECCccCCCCCccCccHHHHHHHhCCCCEEEeCC----CCchhhhcC-CCceE
Confidence 46788999999765 677888 5553 2 344 578999999999998744 334555666 45777
Q ss_pred eeccCCCCccCHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhh
Q 045267 408 RPKANENGIVGRDEIAKVVKALME-GEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKWNN 472 (482)
Q Consensus 408 ~l~~~~~~~~~~~~l~~ai~~vl~-~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~ 472 (482)
.++.. +.++++++|.++++ |+ +.+ +++++..++...+.-+.+..++++.+.+.+
T Consensus 351 lv~~~-----d~~~la~ai~~l~~~d~---~~~---~~~~~~ar~~v~~~f~~~~~~~~l~~~~~~ 405 (406)
T PRK15427 351 LVPEN-----DAQALAQRLAAFSQLDT---DEL---APVVKRAREKVETDFNQQVINRELASLLQA 405 (406)
T ss_pred EeCCC-----CHHHHHHHHHHHHhCCH---HHH---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 77543 78999999999998 75 222 223333333333456666777777766543
No 92
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=98.23 E-value=0.0013 Score=66.05 Aligned_cols=114 Identities=18% Similarity=0.220 Sum_probs=72.0
Q ss_pred Ceee-ccccchh---hhhhcccccccccc----cCchhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCCC
Q 045267 343 GMLV-PSWAPQA---QVLSHGSTGGFLCH----CGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANEN 414 (482)
Q Consensus 343 ~v~~-~~~ipq~---~lL~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~ 414 (482)
++.. .+++|+. .++..+| ++|.= |...++.||+++|+|+|+... ..+...+++ -+.|..++..+
T Consensus 261 ~v~~~~~~~~~~~~~~~~~~aD--v~v~ps~~e~~g~~~lEA~a~G~PvI~s~~----~~~~e~i~~-~~~G~~~~~~~- 332 (388)
T TIGR02149 261 GIIWINKMLPKEELVELLSNAE--VFVCPSIYEPLGIVNLEAMACGTPVVASAT----GGIPEVVVD-GETGFLVPPDN- 332 (388)
T ss_pred ceEEecCCCCHHHHHHHHHhCC--EEEeCCccCCCChHHHHHHHcCCCEEEeCC----CCHHHHhhC-CCceEEcCCCC-
Confidence 3543 4677754 4678888 66542 334577999999999998643 456666777 67788887653
Q ss_pred CccC----HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhh
Q 045267 415 GIVG----RDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKWNN 472 (482)
Q Consensus 415 ~~~~----~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~ 472 (482)
.+ .+++.++|.++++|+ +.+++ +++..++...+.-+.+..++++.+.+++
T Consensus 333 --~~~~~~~~~l~~~i~~l~~~~---~~~~~---~~~~a~~~~~~~~s~~~~~~~~~~~y~~ 386 (388)
T TIGR02149 333 --SDADGFQAELAKAINILLADP---ELAKK---MGIAGRKRAEEEFSWGSIAKKTVEMYRK 386 (388)
T ss_pred --CcccchHHHHHHHHHHHHhCH---HHHHH---HHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 22 389999999999886 32222 2222222222345666677777766554
No 93
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=98.23 E-value=0.0071 Score=65.32 Aligned_cols=80 Identities=14% Similarity=0.107 Sum_probs=52.8
Q ss_pred CCCeeecccc-ch---hhhhhc-cc-cccccc---ccCc-hhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeec
Q 045267 341 GRGMLVPSWA-PQ---AQVLSH-GS-TGGFLC---HCGW-NSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPK 410 (482)
Q Consensus 341 ~~~v~~~~~i-pq---~~lL~~-~~-~~~~I~---HGG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~ 410 (482)
..+|.+.++. +. .+++.. ++ ..+||. .=|+ -++.||+++|+|+|+- +.......+++ -.-|..++
T Consensus 618 ~g~V~flG~~~~~~~~~elyr~iAd~adVfV~PS~~EpFGLvvLEAMAcGlPVVAT----~~GG~~EiV~d-g~tGfLVd 692 (784)
T TIGR02470 618 HGQIRWIGAQLNRVRNGELYRYIADTKGIFVQPALYEAFGLTVLEAMTCGLPTFAT----RFGGPLEIIQD-GVSGFHID 692 (784)
T ss_pred CCeEEEccCcCCcccHHHHHHHhhccCcEEEECCcccCCCHHHHHHHHcCCCEEEc----CCCCHHHHhcC-CCcEEEeC
Confidence 3567776764 32 234442 21 115553 2333 4899999999999986 44556777777 56788887
Q ss_pred cCCCCccCHHHHHHHHHHHh
Q 045267 411 ANENGIVGRDEIAKVVKALM 430 (482)
Q Consensus 411 ~~~~~~~~~~~l~~ai~~vl 430 (482)
.. ++++++++|.+++
T Consensus 693 p~-----D~eaLA~aL~~ll 707 (784)
T TIGR02470 693 PY-----HGEEAAEKIVDFF 707 (784)
T ss_pred CC-----CHHHHHHHHHHHH
Confidence 54 6788999998876
No 94
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=98.23 E-value=0.00023 Score=70.39 Aligned_cols=88 Identities=17% Similarity=0.275 Sum_probs=58.5
Q ss_pred cCCCeeeccccchh---hhhhcccccccccc----cCchhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccC
Q 045267 340 KGRGMLVPSWAPQA---QVLSHGSTGGFLCH----CGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKAN 412 (482)
Q Consensus 340 ~~~~v~~~~~ipq~---~lL~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~ 412 (482)
...++.+.+++|+. .++..++ ++|.- |..+++.||+++|+|+|+....+ ....+.+ . |..+..
T Consensus 251 ~~~~v~~~g~~~~~~~~~~~~~~d--~~l~ps~~e~~~~~~~Ea~a~G~pvI~~~~~~----~~e~~~~-~--~~~~~~- 320 (365)
T cd03809 251 LGDRVRFLGYVSDEELAALYRGAR--AFVFPSLYEGFGLPVLEAMACGTPVIASNISS----LPEVAGD-A--ALYFDP- 320 (365)
T ss_pred CCCeEEECCCCChhHHHHHHhhhh--hhcccchhccCCCCHHHHhcCCCcEEecCCCC----ccceecC-c--eeeeCC-
Confidence 45789999999875 4677888 44422 34568999999999999865422 2222233 3 333332
Q ss_pred CCCccCHHHHHHHHHHHhcCCchHHHHHHHHH
Q 045267 413 ENGIVGRDEIAKVVKALMEGEQGKEVRNKMKD 444 (482)
Q Consensus 413 ~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~ 444 (482)
-+.+++.+++.+++.|+ +.+.+..+
T Consensus 321 ----~~~~~~~~~i~~l~~~~---~~~~~~~~ 345 (365)
T cd03809 321 ----LDPEALAAAIERLLEDP---ALREELRE 345 (365)
T ss_pred ----CCHHHHHHHHHHHhcCH---HHHHHHHH
Confidence 37899999999999887 44444333
No 95
>PLN02846 digalactosyldiacylglycerol synthase
Probab=98.22 E-value=0.0014 Score=66.76 Aligned_cols=101 Identities=9% Similarity=0.034 Sum_probs=65.3
Q ss_pred eeccccchhhhhhcccccccccc----cCchhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCCCCccCHH
Q 045267 345 LVPSWAPQAQVLSHGSTGGFLCH----CGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENGIVGRD 420 (482)
Q Consensus 345 ~~~~~ipq~~lL~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~ 420 (482)
++.++.+.++++..++ +||.- +=.+++.||+++|+|+|+.-..+ + ..+.+ -+-|... + +.+
T Consensus 287 vf~G~~~~~~~~~~~D--vFv~pS~~Et~g~v~lEAmA~G~PVVa~~~~~----~-~~v~~-~~ng~~~---~----~~~ 351 (462)
T PLN02846 287 VYPGRDHADPLFHDYK--VFLNPSTTDVVCTTTAEALAMGKIVVCANHPS----N-EFFKQ-FPNCRTY---D----DGK 351 (462)
T ss_pred EECCCCCHHHHHHhCC--EEEECCCcccchHHHHHHHHcCCcEEEecCCC----c-ceeec-CCceEec---C----CHH
Confidence 3567767777999998 88866 44678999999999999985432 2 33444 3444333 1 678
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhh
Q 045267 421 EIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKWNN 472 (482)
Q Consensus 421 ~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~ 472 (482)
++.+++.++|+++. +..+.+ .+ +.-|-+.+.+++++.+..
T Consensus 352 ~~a~ai~~~l~~~~-~~~~~~-------a~----~~~SWe~~~~~l~~~~~~ 391 (462)
T PLN02846 352 GFVRATLKALAEEP-APLTDA-------QR----HELSWEAATERFLRVADL 391 (462)
T ss_pred HHHHHHHHHHccCc-hhHHHH-------HH----HhCCHHHHHHHHHHHhcc
Confidence 99999999998641 112211 11 245666677777765543
No 96
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. These enzymes belong to the glycosyltransferase family 19 GT19 from CAZY. Lipid-A-disaccharide synthetase 2.4.1.182 from EC is involved with acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase 2.3.1.129 from EC and tetraacyldisaccharide 4'-kinase 2.7.1.130 from EC in the biosynthesis of the phosphorylated glycolipid, lipid A, in the outer membrane of Escherichia coli and other bacteria. These enzymes catalyse the first disaccharide step in the synthesis of lipid-A-disaccharide.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=98.13 E-value=0.00033 Score=69.37 Aligned_cols=100 Identities=23% Similarity=0.275 Sum_probs=65.7
Q ss_pred chhhhhhcccccccccccCchhHHHHhhcCCcEeec-cccccchhhHHHHHhhcce------------eeeeccCCCCcc
Q 045267 351 PQAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAW-PLYAEQKMNAVILTEDVKL------------ALRPKANENGIV 417 (482)
Q Consensus 351 pq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~-P~~~DQ~~na~rv~~~~G~------------G~~l~~~~~~~~ 417 (482)
.-.+++..++ +.+.-.| ..|.|+..+|+|||++ -...=-+..|+++.+ ... -..+-.++ .
T Consensus 253 ~~~~~m~~ad--~al~~SG-TaTLE~Al~g~P~Vv~Yk~~~lt~~iak~lvk-~~~isL~Niia~~~v~PEliQ~~---~ 325 (373)
T PF02684_consen 253 ESYDAMAAAD--AALAASG-TATLEAALLGVPMVVAYKVSPLTYFIAKRLVK-VKYISLPNIIAGREVVPELIQED---A 325 (373)
T ss_pred chHHHHHhCc--chhhcCC-HHHHHHHHhCCCEEEEEcCcHHHHHHHHHhhc-CCEeechhhhcCCCcchhhhccc---C
Confidence 3456788888 6666666 4678999999999885 334445567777755 433 11122344 8
Q ss_pred CHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchH
Q 045267 418 GRDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSST 460 (482)
Q Consensus 418 ~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~ 460 (482)
|++.|.+++.+++.|+ +.++..+...+.+++....|.++.
T Consensus 326 ~~~~i~~~~~~ll~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 365 (373)
T PF02684_consen 326 TPENIAAELLELLENP---EKRKKQKELFREIRQLLGPGASSR 365 (373)
T ss_pred CHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHhhhhccCCH
Confidence 9999999999999987 445555555555555444555543
No 97
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=98.11 E-value=0.0002 Score=69.74 Aligned_cols=109 Identities=15% Similarity=0.197 Sum_probs=77.8
Q ss_pred CCeee---ccccchhhhhhcccccccccccCchhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCCCCccC
Q 045267 342 RGMLV---PSWAPQAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENGIVG 418 (482)
Q Consensus 342 ~~v~~---~~~ipq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~ 418 (482)
+++.+ .+|.+...++.++- +++|-.| |-.-||-.+|+|.+++=...++|. ++ + .|.-+.+. .+
T Consensus 262 ~~v~li~pl~~~~f~~L~~~a~--~iltDSG-giqEEAp~lg~Pvl~lR~~TERPE---~v-~-agt~~lvg------~~ 327 (383)
T COG0381 262 ERVKLIDPLGYLDFHNLMKNAF--LILTDSG-GIQEEAPSLGKPVLVLRDTTERPE---GV-E-AGTNILVG------TD 327 (383)
T ss_pred CcEEEeCCcchHHHHHHHHhce--EEEecCC-chhhhHHhcCCcEEeeccCCCCcc---ce-e-cCceEEeC------cc
Confidence 35654 46667788999999 9999888 457899999999999998888887 23 3 46555555 46
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHh
Q 045267 419 RDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKWN 471 (482)
Q Consensus 419 ~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~ 471 (482)
.+.|.+++.++++++ +++++......-.- .|.++.+.++.+.+...
T Consensus 328 ~~~i~~~~~~ll~~~---~~~~~m~~~~npYg----dg~as~rIv~~l~~~~~ 373 (383)
T COG0381 328 EENILDAATELLEDE---EFYERMSNAKNPYG----DGNASERIVEILLNYFD 373 (383)
T ss_pred HHHHHHHHHHHhhCh---HHHHHHhcccCCCc----CcchHHHHHHHHHHHhh
Confidence 699999999999987 66665554443333 24456566665555443
No 98
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=98.09 E-value=0.0047 Score=61.92 Aligned_cols=112 Identities=20% Similarity=0.165 Sum_probs=69.6
Q ss_pred CCCeeecccc--ch---hhhhhccccccccccc---C-chhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeecc
Q 045267 341 GRGMLVPSWA--PQ---AQVLSHGSTGGFLCHC---G-WNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKA 411 (482)
Q Consensus 341 ~~~v~~~~~i--pq---~~lL~~~~~~~~I~HG---G-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~ 411 (482)
.+++.+.++. ++ ..++..++ +|+.-. | -.++.||+++|+|+|+.... .....+.+ -..|..++
T Consensus 251 ~~~v~~~~~~~~~~~~~~~~~~~ad--~~v~~s~~Eg~g~~~lEA~a~G~Pvv~s~~~----~~~~~i~~-~~~g~~~~- 322 (372)
T cd03792 251 DPDIHVLTLPPVSDLEVNALQRAST--VVLQKSIREGFGLTVTEALWKGKPVIAGPVG----GIPLQIED-GETGFLVD- 322 (372)
T ss_pred CCCeEEEecCCCCHHHHHHHHHhCe--EEEeCCCccCCCHHHHHHHHcCCCEEEcCCC----Cchhhccc-CCceEEeC-
Confidence 3567777776 43 24678888 676432 3 34999999999999986533 33445655 46676543
Q ss_pred CCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhh
Q 045267 412 NENGIVGRDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKWNN 472 (482)
Q Consensus 412 ~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~ 472 (482)
+.+.++.+|.+++.++ +.+++.. +..++...+.-+-+..++++.+.+++
T Consensus 323 ------~~~~~a~~i~~ll~~~---~~~~~~~---~~a~~~~~~~~s~~~~~~~~~~~~~~ 371 (372)
T cd03792 323 ------TVEEAAVRILYLLRDP---ELRRKMG---ANAREHVRENFLITRHLKDYLYLISK 371 (372)
T ss_pred ------CcHHHHHHHHHHHcCH---HHHHHHH---HHHHHHHHHHcCHHHHHHHHHHHHHh
Confidence 3467788999999876 4433322 22222222456666777777766543
No 99
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=98.08 E-value=0.0035 Score=65.15 Aligned_cols=182 Identities=18% Similarity=0.173 Sum_probs=96.3
Q ss_pred CeEeec-cCcCCCCCCccccccccccccCCCCCcEEEEeccCCCCCCHHHHHHHHHHHH--hcC--CceEEEEeCCCCCC
Q 045267 240 PVYPVG-PLVKTGSTAESKNEGCLKWLDDQPLGSVLFVSFGSGGTLSCEQLNELALGLE--MSE--QRFLWVVRSPNNAA 314 (482)
Q Consensus 240 ~~~~vG-p~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~--~~~--~~~i~~~~~~~~~~ 314 (482)
++.||| |+....+. ....++..+-+.-.+++++|-+--||-.+.-...+..++++.+ ... .++++......
T Consensus 382 ~v~yVGHPL~d~i~~-~~~~~~~r~~lgl~~~~~iIaLLPGSR~~EI~rllPv~l~aa~~~~l~~~l~fvvp~a~~~--- 457 (608)
T PRK01021 382 RTVYLGHPLVETISS-FSPNLSWKEQLHLPSDKPIVAAFPGSRRGDILRNLTIQVQAFLASSLASTHQLLVSSANPK--- 457 (608)
T ss_pred CeEEECCcHHhhccc-CCCHHHHHHHcCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHhccCeEEEEecCchh---
Confidence 789999 77654321 1112222222333345678999999843333334445666665 432 34443221110
Q ss_pred CCcccccCCCCCCCCCCchhHHhhhcCCC---eeeccccchhhhhhcccccccccccCchhHHHHhhcCCcEeec-cccc
Q 045267 315 NSTFFSVNSHKDPYDFLPKGFLDRTKGRG---MLVPSWAPQAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAW-PLYA 390 (482)
Q Consensus 315 ~~~~~~~~~~~~~~~~lp~~~~~~~~~~~---v~~~~~ipq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~-P~~~ 390 (482)
..+.+++.....+ +.+..--...+++..|+ +.+.-.| ..+.|+..+|+|||++ -...
T Consensus 458 ----------------~~~~i~~~~~~~~~~~~~ii~~~~~~~~m~aaD--~aLaaSG-TaTLEaAL~g~PmVV~YK~s~ 518 (608)
T PRK01021 458 ----------------YDHLILEVLQQEGCLHSHIVPSQFRYELMRECD--CALAKCG-TIVLETALNQTPTIVTCQLRP 518 (608)
T ss_pred ----------------hHHHHHHHHhhcCCCCeEEecCcchHHHHHhcC--eeeecCC-HHHHHHHHhCCCEEEEEecCH
Confidence 0122222221111 12211001257899999 7887777 4578999999999884 2333
Q ss_pred cchhhHHHHHhhc--------------ceeeeec--cCCCCccCHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHH
Q 045267 391 EQKMNAVILTEDV--------------KLALRPK--ANENGIVGRDEIAKVVKALMEGEQ-GKEVRNKMKDLKDAA 449 (482)
Q Consensus 391 DQ~~na~rv~~~~--------------G~G~~l~--~~~~~~~~~~~l~~ai~~vl~~~~-~~~~r~~a~~l~~~~ 449 (482)
=-+..++++.+ . .+=..+- .++ .|++.|++++ ++|.|++ .+++++..+++++.+
T Consensus 519 Lty~Iak~Lvk-i~i~yIsLpNIIagr~VvPEllqgQ~~---~tpe~La~~l-~lL~d~~~r~~~~~~l~~lr~~L 589 (608)
T PRK01021 519 FDTFLAKYIFK-IILPAYSLPNIILGSTIFPEFIGGKKD---FQPEEVAAAL-DILKTSQSKEKQKDACRDLYQAM 589 (608)
T ss_pred HHHHHHHHHHh-ccCCeeehhHHhcCCCcchhhcCCccc---CCHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHh
Confidence 34455666554 2 2222222 234 8999999997 8888873 234445555555544
No 100
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.05 E-value=0.014 Score=62.89 Aligned_cols=112 Identities=17% Similarity=0.181 Sum_probs=74.3
Q ss_pred CCCeeeccccch-hhhhhccccccccc---ccC-chhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCCCC
Q 045267 341 GRGMLVPSWAPQ-AQVLSHGSTGGFLC---HCG-WNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENG 415 (482)
Q Consensus 341 ~~~v~~~~~ipq-~~lL~~~~~~~~I~---HGG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~ 415 (482)
.++|.+.+|.++ ..++..++ +||. +.| -+++.||+++|+|+|+... ......+++ -..|..++..+
T Consensus 573 ~~~V~flG~~~dv~~ll~aaD--v~VlpS~~Egfp~vlLEAMA~G~PVVat~~----gG~~EiV~d-g~~GlLv~~~d-- 643 (694)
T PRK15179 573 GERILFTGLSRRVGYWLTQFN--AFLLLSRFEGLPNVLIEAQFSGVPVVTTLA----GGAGEAVQE-GVTGLTLPADT-- 643 (694)
T ss_pred CCcEEEcCCcchHHHHHHhcC--EEEeccccccchHHHHHHHHcCCeEEEECC----CChHHHccC-CCCEEEeCCCC--
Confidence 467888898874 56788888 5553 455 5689999999999999754 345556667 45788887766
Q ss_pred ccCHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHH
Q 045267 416 IVGRDEIAKVVKALMEGEQ-GKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASK 469 (482)
Q Consensus 416 ~~~~~~l~~ai~~vl~~~~-~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~ 469 (482)
.+++++++++.+++.+.. ...+++++++.. . +.-+....++++.+.
T Consensus 644 -~~~~~La~aL~~ll~~l~~~~~l~~~ar~~a---~----~~FS~~~~~~~~~~l 690 (694)
T PRK15179 644 -VTAPDVAEALARIHDMCAADPGIARKAADWA---S----ARFSLNQMIASTVRC 690 (694)
T ss_pred -CChHHHHHHHHHHHhChhccHHHHHHHHHHH---H----HhCCHHHHHHHHHHH
Confidence 677788888877765421 124554443332 2 345666666666554
No 101
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.05 E-value=0.0012 Score=64.14 Aligned_cols=198 Identities=14% Similarity=0.138 Sum_probs=109.2
Q ss_pred eEeec-cCcCCCCCCccccccccccccCCCCCcEEEEeccCCCCCCHHHHHHHHHHHHhc-----CCceEEEEeCCCCCC
Q 045267 241 VYPVG-PLVKTGSTAESKNEGCLKWLDDQPLGSVLFVSFGSGGTLSCEQLNELALGLEMS-----EQRFLWVVRSPNNAA 314 (482)
Q Consensus 241 ~~~vG-p~~~~~~~~~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~~~~~~~~~~~al~~~-----~~~~i~~~~~~~~~~ 314 (482)
..||| |+....+. .+..+.+.+-+....+++++.+--||-.+.-......+.++...+ +.+++.-+.....
T Consensus 158 ~~yVGHpl~d~i~~-~~~r~~ar~~l~~~~~~~~lalLPGSR~sEI~rl~~~f~~a~~~l~~~~~~~~~vlp~~~~~~-- 234 (381)
T COG0763 158 CTYVGHPLADEIPL-LPDREAAREKLGIDADEKTLALLPGSRRSEIRRLLPPFVQAAQELKARYPDLKFVLPLVNAKY-- 234 (381)
T ss_pred eEEeCChhhhhccc-cccHHHHHHHhCCCCCCCeEEEecCCcHHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcHHH--
Confidence 88999 66555432 122233333333334456999999985433333333344554433 2355544432110
Q ss_pred CCcccccCCCCCCCCCCchhHHhhh-cCCCeeeccccc---hhhhhhcccccccccccCchhHHHHhhcCCcEeecc-cc
Q 045267 315 NSTFFSVNSHKDPYDFLPKGFLDRT-KGRGMLVPSWAP---QAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAWP-LY 389 (482)
Q Consensus 315 ~~~~~~~~~~~~~~~~lp~~~~~~~-~~~~v~~~~~ip---q~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P-~~ 389 (482)
+...+.. ........-++. -..++..|| +.+.-+|- -+.|+..+|+|||+.= ..
T Consensus 235 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aD--~al~aSGT-~tLE~aL~g~P~Vv~Yk~~ 293 (381)
T COG0763 235 ------------------RRIIEEALKWEVAGLSLILIDGEKRKAFAAAD--AALAASGT-ATLEAALAGTPMVVAYKVK 293 (381)
T ss_pred ------------------HHHHHHHhhccccCceEEecCchHHHHHHHhh--HHHHhccH-HHHHHHHhCCCEEEEEecc
Confidence 1111111 111111112222 133677888 77777774 4679999999999842 22
Q ss_pred ccchhhHHHHHhhccee------------eeeccCCCCccCHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHHHHhhcC
Q 045267 390 AEQKMNAVILTEDVKLA------------LRPKANENGIVGRDEIAKVVKALMEGEQ-GKEVRNKMKDLKDAAAAVLSEN 456 (482)
Q Consensus 390 ~DQ~~na~rv~~~~G~G------------~~l~~~~~~~~~~~~l~~ai~~vl~~~~-~~~~r~~a~~l~~~~~~a~~~~ 456 (482)
.=-++.++++.. .... ..+-.++ .+++.|++++..++.|+. -+.+++....|.+.++ ++
T Consensus 294 ~it~~iak~lvk-~~yisLpNIi~~~~ivPEliq~~---~~pe~la~~l~~ll~~~~~~~~~~~~~~~l~~~l~----~~ 365 (381)
T COG0763 294 PITYFIAKRLVK-LPYVSLPNILAGREIVPELIQED---CTPENLARALEELLLNGDRREALKEKFRELHQYLR----ED 365 (381)
T ss_pred HHHHHHHHHhcc-CCcccchHHhcCCccchHHHhhh---cCHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHc----CC
Confidence 223445555554 3322 2222244 789999999999999873 2456666666666666 56
Q ss_pred CchHHHHHHHHHHH
Q 045267 457 GSSTKALSQLASKW 470 (482)
Q Consensus 457 g~~~~~~~~~~~~~ 470 (482)
++++.+.+.+.+.+
T Consensus 366 ~~~e~aA~~vl~~~ 379 (381)
T COG0763 366 PASEIAAQAVLELL 379 (381)
T ss_pred cHHHHHHHHHHHHh
Confidence 68888888777654
No 102
>PRK00654 glgA glycogen synthase; Provisional
Probab=98.03 E-value=0.00077 Score=69.84 Aligned_cols=103 Identities=11% Similarity=0.049 Sum_probs=62.4
Q ss_pred hhhhccccccccc---ccCch-hHHHHhhcCCcEeeccccccchhhHHHHHh-----hcceeeeeccCCCCccCHHHHHH
Q 045267 354 QVLSHGSTGGFLC---HCGWN-SVLESVVNGVPLIAWPLYAEQKMNAVILTE-----DVKLALRPKANENGIVGRDEIAK 424 (482)
Q Consensus 354 ~lL~~~~~~~~I~---HGG~g-s~~eal~~GvP~v~~P~~~DQ~~na~rv~~-----~~G~G~~l~~~~~~~~~~~~l~~ 424 (482)
.++..++ ++|. +-|.| +..||+++|+|.|+....+ ....+.+ +.+.|..++.. +++++++
T Consensus 352 ~~~~~aD--v~v~PS~~E~~gl~~lEAma~G~p~V~~~~gG----~~e~v~~~~~~~~~~~G~lv~~~-----d~~~la~ 420 (466)
T PRK00654 352 RIYAGAD--MFLMPSRFEPCGLTQLYALRYGTLPIVRRTGG----LADTVIDYNPEDGEATGFVFDDF-----NAEDLLR 420 (466)
T ss_pred HHHhhCC--EEEeCCCCCCchHHHHHHHHCCCCEEEeCCCC----ccceeecCCCCCCCCceEEeCCC-----CHHHHHH
Confidence 4678888 6663 34555 7889999999999864432 2222222 03778777653 7899999
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhc
Q 045267 425 VVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKWNNN 473 (482)
Q Consensus 425 ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~~ 473 (482)
++.+++.... -++..++++.... .+.-+-++.++++.+-.++.
T Consensus 421 ~i~~~l~~~~---~~~~~~~~~~~~~---~~~fsw~~~a~~~~~lY~~~ 463 (466)
T PRK00654 421 ALRRALELYR---QPPLWRALQRQAM---AQDFSWDKSAEEYLELYRRL 463 (466)
T ss_pred HHHHHHHHhc---CHHHHHHHHHHHh---ccCCChHHHHHHHHHHHHHH
Confidence 9999886210 0111222332222 25667777777777655543
No 103
>PLN02949 transferase, transferring glycosyl groups
Probab=98.00 E-value=0.015 Score=59.92 Aligned_cols=113 Identities=12% Similarity=0.058 Sum_probs=67.8
Q ss_pred CCCeeeccccchhh---hhhccccccccc---ccCch-hHHHHhhcCCcEeeccccccchhhHHHHHhh-cc-eeeeecc
Q 045267 341 GRGMLVPSWAPQAQ---VLSHGSTGGFLC---HCGWN-SVLESVVNGVPLIAWPLYAEQKMNAVILTED-VK-LALRPKA 411 (482)
Q Consensus 341 ~~~v~~~~~ipq~~---lL~~~~~~~~I~---HGG~g-s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~-~G-~G~~l~~ 411 (482)
.++|.+.+++|+.+ +|..++ ++|+ +-|+| ++.||+++|+|+|+....+-- ...+.++ .| .|...
T Consensus 334 ~~~V~f~g~v~~~el~~ll~~a~--~~v~~s~~E~FGivvlEAMA~G~PVIa~~~gGp~---~eIV~~~~~g~tG~l~-- 406 (463)
T PLN02949 334 DGDVEFHKNVSYRDLVRLLGGAV--AGLHSMIDEHFGISVVEYMAAGAVPIAHNSAGPK---MDIVLDEDGQQTGFLA-- 406 (463)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCc--EEEeCCccCCCChHHHHHHHcCCcEEEeCCCCCc---ceeeecCCCCcccccC--
Confidence 56888999998655 677888 6652 33444 799999999999998654310 0111110 01 12221
Q ss_pred CCCCccCHHHHHHHHHHHhcCC-c-hHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhc
Q 045267 412 NENGIVGRDEIAKVVKALMEGE-Q-GKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKWNNN 473 (482)
Q Consensus 412 ~~~~~~~~~~l~~ai~~vl~~~-~-~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~~ 473 (482)
-+.+++++++.++++++ + .+++.+++++-.+ .-+.++..+++.+.+.+.
T Consensus 407 -----~~~~~la~ai~~ll~~~~~~r~~m~~~ar~~~~--------~FS~e~~~~~~~~~i~~l 457 (463)
T PLN02949 407 -----TTVEEYADAILEVLRMRETERLEIAAAARKRAN--------RFSEQRFNEDFKDAIRPI 457 (463)
T ss_pred -----CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH--------HcCHHHHHHHHHHHHHHH
Confidence 26899999999999853 1 1234444443221 256666666666665554
No 104
>PLN00142 sucrose synthase
Probab=97.90 E-value=0.011 Score=64.07 Aligned_cols=61 Identities=21% Similarity=0.230 Sum_probs=43.1
Q ss_pred cccc---ccCch-hHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCCCCccCHHHHHHHHHHH----hcCC
Q 045267 363 GFLC---HCGWN-SVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENGIVGRDEIAKVVKAL----MEGE 433 (482)
Q Consensus 363 ~~I~---HGG~g-s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~v----l~~~ 433 (482)
+||. .-|.| ++.||+++|+|+|+- |.......+++ -.-|..++.. ++++++++|.++ +.|+
T Consensus 669 VfVlPS~~EgFGLvvLEAMA~GlPVVAT----dvGG~~EIV~d-G~tG~LV~P~-----D~eaLA~aI~~lLekLl~Dp 737 (815)
T PLN00142 669 AFVQPALYEAFGLTVVEAMTCGLPTFAT----CQGGPAEIIVD-GVSGFHIDPY-----HGDEAANKIADFFEKCKEDP 737 (815)
T ss_pred EEEeCCcccCCCHHHHHHHHcCCCEEEc----CCCCHHHHhcC-CCcEEEeCCC-----CHHHHHHHHHHHHHHhcCCH
Confidence 5654 35555 899999999999886 44456667777 4668888754 567777777654 4665
No 105
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center
Probab=97.85 E-value=0.015 Score=58.46 Aligned_cols=110 Identities=12% Similarity=0.066 Sum_probs=68.7
Q ss_pred CCCeeeccccchhh---hhhcccccccc------cccCc-hhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeec
Q 045267 341 GRGMLVPSWAPQAQ---VLSHGSTGGFL------CHCGW-NSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPK 410 (482)
Q Consensus 341 ~~~v~~~~~ipq~~---lL~~~~~~~~I------~HGG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~ 410 (482)
.+||.+.+++|+.+ .+.++++.++- +.++. +.+.|++++|+|+|..++ ...++. .+.+....
T Consensus 253 ~~nV~~~G~~~~~~l~~~l~~~Dv~l~P~~~~~~~~~~~P~Kl~EylA~G~PVVat~~-------~~~~~~-~~~~~~~~ 324 (373)
T cd04950 253 LPNVHYLGPKPYKELPAYLAGFDVAILPFRLNELTRATSPLKLFEYLAAGKPVVATPL-------PEVRRY-EDEVVLIA 324 (373)
T ss_pred CCCEEEeCCCCHHHHHHHHHhCCEEecCCccchhhhcCCcchHHHHhccCCCEEecCc-------HHHHhh-cCcEEEeC
Confidence 46999999999655 57778854432 23333 358999999999998753 233344 34233322
Q ss_pred cCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhc
Q 045267 411 ANENGIVGRDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKWNNN 473 (482)
Q Consensus 411 ~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~~ 473 (482)
-+++++.++|.+++.++..+..+++ .+ .. +.-+-+..++++.+.+.++
T Consensus 325 ------~d~~~~~~ai~~~l~~~~~~~~~~~----~~-~~----~~~sW~~~a~~~~~~l~~~ 372 (373)
T cd04950 325 ------DDPEEFVAAIEKALLEDGPARERRR----LR-LA----AQNSWDARAAEMLEALQEN 372 (373)
T ss_pred ------CCHHHHHHHHHHHHhcCCchHHHHH----HH-HH----HHCCHHHHHHHHHHHHHhc
Confidence 3789999999998765421122211 11 22 3467777788887777654
No 106
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=97.85 E-value=0.0056 Score=63.55 Aligned_cols=112 Identities=12% Similarity=0.035 Sum_probs=69.0
Q ss_pred CCCeeeccccchh---hhhhccccccccc---ccCch-hHHHHhhcCCcEeeccccccchhhHHHHHh-----hcceeee
Q 045267 341 GRGMLVPSWAPQA---QVLSHGSTGGFLC---HCGWN-SVLESVVNGVPLIAWPLYAEQKMNAVILTE-----DVKLALR 408 (482)
Q Consensus 341 ~~~v~~~~~ipq~---~lL~~~~~~~~I~---HGG~g-s~~eal~~GvP~v~~P~~~DQ~~na~rv~~-----~~G~G~~ 408 (482)
+.++.+....+.. .++..++ ++|. +-|.| +.+||+++|+|.|+-...+ ....+.+ +-+.|..
T Consensus 345 ~~~v~~~~~~~~~~~~~~~~~aD--v~l~pS~~E~~gl~~lEAma~G~pvI~s~~gg----~~e~v~~~~~~~~~~~G~l 418 (473)
T TIGR02095 345 PGNVRVIIGYDEALAHLIYAGAD--FILMPSRFEPCGLTQLYAMRYGTVPIVRRTGG----LADTVVDGDPEAESGTGFL 418 (473)
T ss_pred CCcEEEEEcCCHHHHHHHHHhCC--EEEeCCCcCCcHHHHHHHHHCCCCeEEccCCC----ccceEecCCCCCCCCceEE
Confidence 3456554445543 4778888 5553 23444 7889999999999865432 2223333 0277777
Q ss_pred eccCCCCccCHHHHHHHHHHHhc----CCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhh
Q 045267 409 PKANENGIVGRDEIAKVVKALME----GEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKWNN 472 (482)
Q Consensus 409 l~~~~~~~~~~~~l~~ai~~vl~----~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~ 472 (482)
++. -++++++++|.+++. ++ +. .+++++.. ..+.-+-++.++++.+..++
T Consensus 419 ~~~-----~d~~~la~~i~~~l~~~~~~~---~~---~~~~~~~~---~~~~fsw~~~a~~~~~~Y~~ 472 (473)
T TIGR02095 419 FEE-----YDPGALLAALSRALRLYRQDP---SL---WEALQKNA---MSQDFSWDKSAKQYVELYRS 472 (473)
T ss_pred eCC-----CCHHHHHHHHHHHHHHHhcCH---HH---HHHHHHHH---hccCCCcHHHHHHHHHHHHh
Confidence 764 378899999999886 43 22 22233222 22567777788888776554
No 107
>PLN02501 digalactosyldiacylglycerol synthase
Probab=97.84 E-value=0.031 Score=59.04 Aligned_cols=76 Identities=11% Similarity=0.004 Sum_probs=52.5
Q ss_pred Ceeeccccchh-hhhhccccccccc---c-cCchhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCCCCcc
Q 045267 343 GMLVPSWAPQA-QVLSHGSTGGFLC---H-CGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENGIV 417 (482)
Q Consensus 343 ~v~~~~~ipq~-~lL~~~~~~~~I~---H-GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~ 417 (482)
++.+.++.++. +++..++ +||. . |=..++.||+++|+|+|+.-..+... +.+ |.+..+. -
T Consensus 602 ~V~FLG~~dd~~~lyasaD--VFVlPS~sEgFGlVlLEAMA~GlPVVATd~pG~e~-----V~~--g~nGll~------~ 666 (794)
T PLN02501 602 NLNFLKGRDHADDSLHGYK--VFINPSISDVLCTATAEALAMGKFVVCADHPSNEF-----FRS--FPNCLTY------K 666 (794)
T ss_pred EEEecCCCCCHHHHHHhCC--EEEECCCcccchHHHHHHHHcCCCEEEecCCCCce-----Eee--cCCeEec------C
Confidence 36666777754 4888899 7764 2 33568999999999999986654321 223 2222222 2
Q ss_pred CHHHHHHHHHHHhcCC
Q 045267 418 GRDEIAKVVKALMEGE 433 (482)
Q Consensus 418 ~~~~l~~ai~~vl~~~ 433 (482)
+.++++++|.++|.++
T Consensus 667 D~EafAeAI~~LLsd~ 682 (794)
T PLN02501 667 TSEDFVAKVKEALANE 682 (794)
T ss_pred CHHHHHHHHHHHHhCc
Confidence 6899999999999986
No 108
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases. ALG11 in yeast is involved in adding the final 1,2-linked Man to the Man5GlcNAc2-PP-Dol synthesized on the cytosolic face of the ER. The deletion analysis of ALG11 was shown to block the early steps of core biosynthesis that takes place on the cytoplasmic face of the ER and lead to a defect in the assembly of lipid-linked oligosaccharides.
Probab=97.83 E-value=0.0053 Score=62.68 Aligned_cols=80 Identities=16% Similarity=0.056 Sum_probs=54.9
Q ss_pred CCCeeeccccchhh---hhhcccccccccc---cCc-hhHHHHhhcCCcEeeccccccchhhHHHHH---hhcceeeeec
Q 045267 341 GRGMLVPSWAPQAQ---VLSHGSTGGFLCH---CGW-NSVLESVVNGVPLIAWPLYAEQKMNAVILT---EDVKLALRPK 410 (482)
Q Consensus 341 ~~~v~~~~~ipq~~---lL~~~~~~~~I~H---GG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~---~~~G~G~~l~ 410 (482)
.++|.+.+++|+.+ +|..++ ++|+- -|. -++.||+++|+|.|+.-..+.- ...++ + -..|...
T Consensus 304 ~~~V~f~g~v~~~~l~~~l~~ad--v~v~~s~~E~Fgi~~lEAMa~G~pvIa~~~ggp~---~~iv~~~~~-g~~G~l~- 376 (419)
T cd03806 304 EDKVEFVVNAPFEELLEELSTAS--IGLHTMWNEHFGIGVVEYMAAGLIPLAHASGGPL---LDIVVPWDG-GPTGFLA- 376 (419)
T ss_pred CCeEEEecCCCHHHHHHHHHhCe--EEEECCccCCcccHHHHHHHcCCcEEEEcCCCCc---hheeeccCC-CCceEEe-
Confidence 46888999998654 777888 55531 222 3889999999999986543311 12233 3 3566553
Q ss_pred cCCCCccCHHHHHHHHHHHhcCC
Q 045267 411 ANENGIVGRDEIAKVVKALMEGE 433 (482)
Q Consensus 411 ~~~~~~~~~~~l~~ai~~vl~~~ 433 (482)
-+++++++++.++++++
T Consensus 377 ------~d~~~la~ai~~ll~~~ 393 (419)
T cd03806 377 ------STAEEYAEAIEKILSLS 393 (419)
T ss_pred ------CCHHHHHHHHHHHHhCC
Confidence 27899999999999876
No 109
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=97.83 E-value=0.00079 Score=66.84 Aligned_cols=127 Identities=10% Similarity=0.136 Sum_probs=83.4
Q ss_pred EEEeccCCCCCCHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCcccccCCCCCCCCCCchhHHhhhcCCCeeeccccchh
Q 045267 274 LFVSFGSGGTLSCEQLNELALGLEMSEQRFLWVVRSPNNAANSTFFSVNSHKDPYDFLPKGFLDRTKGRGMLVPSWAPQA 353 (482)
Q Consensus 274 v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~ipq~ 353 (482)
.++..|++. .......++++++..+.++++ ++.+.. .+.+.+ ...+||.+.+++|+.
T Consensus 197 ~il~~G~~~--~~K~~~~li~a~~~~~~~l~i-vG~g~~-------------------~~~l~~-~~~~~V~~~g~~~~~ 253 (351)
T cd03804 197 YYLSVGRLV--PYKRIDLAIEAFNKLGKRLVV-IGDGPE-------------------LDRLRA-KAGPNVTFLGRVSDE 253 (351)
T ss_pred EEEEEEcCc--cccChHHHHHHHHHCCCcEEE-EECChh-------------------HHHHHh-hcCCCEEEecCCCHH
Confidence 344556643 234466788888888755443 333211 122222 345789999999975
Q ss_pred ---hhhhcccccccccccCch-hHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCCCCccCHHHHHHHHHHH
Q 045267 354 ---QVLSHGSTGGFLCHCGWN-SVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENGIVGRDEIAKVVKAL 429 (482)
Q Consensus 354 ---~lL~~~~~~~~I~HGG~g-s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~v 429 (482)
.++..+++-++-+.-|.| ++.||+++|+|+|+....+ ....+++ -+.|..++.. +++.++++|.++
T Consensus 254 ~~~~~~~~ad~~v~ps~e~~g~~~~Eama~G~Pvi~~~~~~----~~e~i~~-~~~G~~~~~~-----~~~~la~~i~~l 323 (351)
T cd03804 254 ELRDLYARARAFLFPAEEDFGIVPVEAMASGTPVIAYGKGG----ALETVID-GVTGILFEEQ-----TVESLAAAVERF 323 (351)
T ss_pred HHHHHHHhCCEEEECCcCCCCchHHHHHHcCCCEEEeCCCC----CcceeeC-CCCEEEeCCC-----CHHHHHHHHHHH
Confidence 468888943333444444 5789999999999976433 4444566 5678877653 678899999999
Q ss_pred hcCC
Q 045267 430 MEGE 433 (482)
Q Consensus 430 l~~~ 433 (482)
++|+
T Consensus 324 ~~~~ 327 (351)
T cd03804 324 EKNE 327 (351)
T ss_pred HhCc
Confidence 9886
No 110
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=97.81 E-value=0.0077 Score=62.56 Aligned_cols=116 Identities=10% Similarity=-0.007 Sum_probs=65.4
Q ss_pred CCCeeeccccchh---hhhhcccccccccc---cCc-hhHHHHhhcCCcEeeccccc--cchhhHHHHHhhcceeeeecc
Q 045267 341 GRGMLVPSWAPQA---QVLSHGSTGGFLCH---CGW-NSVLESVVNGVPLIAWPLYA--EQKMNAVILTEDVKLALRPKA 411 (482)
Q Consensus 341 ~~~v~~~~~ipq~---~lL~~~~~~~~I~H---GG~-gs~~eal~~GvP~v~~P~~~--DQ~~na~rv~~~~G~G~~l~~ 411 (482)
..++.+....++. .++..++ ++|.- -|. .+.+||+++|+|.|+....+ |--.....-.+ .|.|..++.
T Consensus 350 ~~~v~~~~~~~~~~~~~~~~~aD--v~l~pS~~E~~gl~~lEAma~G~pvI~~~~gg~~e~v~~~~~~~~-~~~G~~~~~ 426 (476)
T cd03791 350 PGRVAVLIGYDEALAHLIYAGAD--FFLMPSRFEPCGLTQMYAMRYGTVPIVRATGGLADTVIDYNEDTG-EGTGFVFEG 426 (476)
T ss_pred CCcEEEEEeCCHHHHHHHHHhCC--EEECCCCCCCCcHHHHHHhhCCCCCEECcCCCccceEeCCcCCCC-CCCeEEeCC
Confidence 4566543333332 4677888 55532 233 37789999999999865432 21111111112 457888765
Q ss_pred CCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Q 045267 412 NENGIVGRDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKW 470 (482)
Q Consensus 412 ~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~ 470 (482)
-+++++++++.+++.... -++...++++...+ ..-+-++.++++.+.+
T Consensus 427 -----~~~~~l~~~i~~~l~~~~---~~~~~~~~~~~~~~---~~fsw~~~a~~~~~~y 474 (476)
T cd03791 427 -----YNADALLAALRRALALYR---DPEAWRKLQRNAMA---QDFSWDRSAKEYLELY 474 (476)
T ss_pred -----CCHHHHHHHHHHHHHHHc---CHHHHHHHHHHHhc---cCCChHHHHHHHHHHH
Confidence 368999999999885321 12233333333332 4456666777766654
No 111
>PRK10125 putative glycosyl transferase; Provisional
Probab=97.80 E-value=0.012 Score=59.65 Aligned_cols=140 Identities=12% Similarity=0.110 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHhcCCce-EEEEeCCCCCCCCcccccCCCCCCCCCCchhHHhhhcCCCeeeccccc-h---hhhhhcccc
Q 045267 287 EQLNELALGLEMSEQRF-LWVVRSPNNAANSTFFSVNSHKDPYDFLPKGFLDRTKGRGMLVPSWAP-Q---AQVLSHGST 361 (482)
Q Consensus 287 ~~~~~~~~al~~~~~~~-i~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~ip-q---~~lL~~~~~ 361 (482)
..+..+++|+...+.++ ++.+|.+.. .. ..++...++.. + ..++..++
T Consensus 256 Kg~~~li~A~~~l~~~~~L~ivG~g~~-----------------~~---------~~~v~~~g~~~~~~~l~~~y~~aD- 308 (405)
T PRK10125 256 KTDQQLVREMMALGDKIELHTFGKFSP-----------------FT---------AGNVVNHGFETDKRKLMSALNQMD- 308 (405)
T ss_pred ccHHHHHHHHHhCCCCeEEEEEcCCCc-----------------cc---------ccceEEecCcCCHHHHHHHHHhCC-
Confidence 44677888888776544 344443211 00 12444455543 2 33556677
Q ss_pred ccccc----ccCchhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCCCCccCHHHHHHHHHHHhcCCchHH
Q 045267 362 GGFLC----HCGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENGIVGRDEIAKVVKALMEGEQGKE 437 (482)
Q Consensus 362 ~~~I~----HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~vl~~~~~~~ 437 (482)
+||. =|--.++.||+++|+|+|.....+ ....+.+ +-|..++.. +.++|+++++..+.+. .
T Consensus 309 -vfV~pS~~Egfp~vilEAmA~G~PVVat~~gG----~~Eiv~~--~~G~lv~~~-----d~~~La~~~~~~~~~~---~ 373 (405)
T PRK10125 309 -ALVFSSRVDNYPLILCEALSIGVPVIATHSDA----AREVLQK--SGGKTVSEE-----EVLQLAQLSKPEIAQA---V 373 (405)
T ss_pred -EEEECCccccCcCHHHHHHHcCCCEEEeCCCC----hHHhEeC--CcEEEECCC-----CHHHHHhccCHHHHHH---h
Confidence 6654 344568999999999999987654 3333333 568877654 5677776543222110 1
Q ss_pred HHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhh
Q 045267 438 VRNKMKDLKDAAAAVLSENGSSTKALSQLASKWNN 472 (482)
Q Consensus 438 ~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~ 472 (482)
+.+.....+++.. +.-+....++++++.+.+
T Consensus 374 ~~~~~~~~r~~~~----~~fs~~~~~~~y~~lY~~ 404 (405)
T PRK10125 374 FGTTLAEFSQRSR----AAYSGQQMLEEYVNFYQN 404 (405)
T ss_pred hhhHHHHHHHHHH----HhCCHHHHHHHHHHHHHh
Confidence 1111122223332 456777777777775543
No 112
>COG5017 Uncharacterized conserved protein [Function unknown]
Probab=97.57 E-value=0.00061 Score=55.66 Aligned_cols=79 Identities=19% Similarity=0.173 Sum_probs=57.9
Q ss_pred cccc-hhhhhhcccccccccccCchhHHHHhhcCCcEeecccc--------ccchhhHHHHHhhcceeeeeccCCCCccC
Q 045267 348 SWAP-QAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAWPLY--------AEQKMNAVILTEDVKLALRPKANENGIVG 418 (482)
Q Consensus 348 ~~ip-q~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~--------~DQ~~na~rv~~~~G~G~~l~~~~~~~~~ 418 (482)
++.+ .+.+...++ ++|+|+|.||+..++..++|.|++|-. ..|-..|..+.+ .+.=....+.+. .=
T Consensus 54 ~~~~kiQsli~dar--IVISHaG~GSIL~~~rl~kplIv~pr~s~y~elvDdHQvela~klae-~~~vv~~spte~--~L 128 (161)
T COG5017 54 DKEEKIQSLIHDAR--IVISHAGEGSILLLLRLDKPLIVVPRSSQYQELVDDHQVELALKLAE-INYVVACSPTEL--VL 128 (161)
T ss_pred chHHHHHHHhhcce--EEEeccCcchHHHHhhcCCcEEEEECchhHHHhhhhHHHHHHHHHHh-cCceEEEcCCch--hh
Confidence 4445 455666677 999999999999999999999999943 358889999999 898888775540 12
Q ss_pred HHHHHHHHHHHhc
Q 045267 419 RDEIAKVVKALME 431 (482)
Q Consensus 419 ~~~l~~ai~~vl~ 431 (482)
.+.++....+++.
T Consensus 129 ~a~l~~s~~~v~~ 141 (161)
T COG5017 129 QAGLQVSVADVLH 141 (161)
T ss_pred HHhHhhhhhhhcC
Confidence 3444444444443
No 113
>TIGR02918 accessory Sec system glycosylation protein GtfA. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus. Members are associated with glycosylation of serine-rich glycoproteins exported by the accessory Sec system.
Probab=97.56 E-value=0.014 Score=60.77 Aligned_cols=116 Identities=9% Similarity=0.075 Sum_probs=72.2
Q ss_pred CCCeeeccccchhhhhhccccccccc---ccC-chhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccC--CC
Q 045267 341 GRGMLVPSWAPQAQVLSHGSTGGFLC---HCG-WNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKAN--EN 414 (482)
Q Consensus 341 ~~~v~~~~~ipq~~lL~~~~~~~~I~---HGG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~--~~ 414 (482)
.++|.+.++.+...++..++ ++|. .-| ..++.||+++|+|+|+.-.. ..+...+++ -.-|..++.. .+
T Consensus 375 ~~~V~f~G~~~~~~~~~~ad--v~v~pS~~Egfgl~~lEAma~G~PVI~~dv~---~G~~eiI~~-g~nG~lv~~~~~~~ 448 (500)
T TIGR02918 375 QDYIHLKGHRNLSEVYKDYE--LYLSASTSEGFGLTLMEAVGSGLGMIGFDVN---YGNPTFIED-NKNGYLIPIDEEED 448 (500)
T ss_pred CCeEEEcCCCCHHHHHHhCC--EEEEcCccccccHHHHHHHHhCCCEEEecCC---CCCHHHccC-CCCEEEEeCCcccc
Confidence 45688889988888999999 6664 344 45899999999999997532 134455555 4567666521 10
Q ss_pred CccC-HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Q 045267 415 GIVG-RDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKW 470 (482)
Q Consensus 415 ~~~~-~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~ 470 (482)
..-+ .++|+++|.+++.++..+.+.+++++.++ .-+....++.+.+.+
T Consensus 449 d~~~~~~~la~~I~~ll~~~~~~~~~~~a~~~a~--------~fs~~~v~~~w~~ll 497 (500)
T TIGR02918 449 DEDQIITALAEKIVEYFNSNDIDAFHEYSYQIAE--------GFLTANIIEKWKKLV 497 (500)
T ss_pred chhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH--------hcCHHHHHHHHHHHH
Confidence 0012 78899999999954322344455544332 344445555544433
No 114
>PLN02316 synthase/transferase
Probab=97.49 E-value=0.11 Score=57.83 Aligned_cols=115 Identities=4% Similarity=-0.092 Sum_probs=71.8
Q ss_pred CCeeeccccchh---hhhhcccccccccc---cC-chhHHHHhhcCCcEeeccccccchhhHHHHHhh------------
Q 045267 342 RGMLVPSWAPQA---QVLSHGSTGGFLCH---CG-WNSVLESVVNGVPLIAWPLYAEQKMNAVILTED------------ 402 (482)
Q Consensus 342 ~~v~~~~~ipq~---~lL~~~~~~~~I~H---GG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~------------ 402 (482)
.++.+....+.. .++..+| +|+.- =| -.+.+||+++|+|.|+-...+ ....|.+.
T Consensus 900 ~rV~f~g~~de~lah~iyaaAD--iflmPS~~EP~GLvqLEAMa~GtppVvs~vGG----L~DtV~d~d~~~~~~~~~g~ 973 (1036)
T PLN02316 900 DRARLCLTYDEPLSHLIYAGAD--FILVPSIFEPCGLTQLTAMRYGSIPVVRKTGG----LFDTVFDVDHDKERAQAQGL 973 (1036)
T ss_pred CeEEEEecCCHHHHHHHHHhCc--EEEeCCcccCccHHHHHHHHcCCCeEEEcCCC----cHhhcccccccccccccccc
Confidence 355554444432 5788888 77742 23 348899999999988864432 22222210
Q ss_pred cceeeeeccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhh
Q 045267 403 VKLALRPKANENGIVGRDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKWNN 472 (482)
Q Consensus 403 ~G~G~~l~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~ 472 (482)
-+-|..++. .+++.|..+|.+++.+ |.+....+++..++++...-|-.+.+++..+...+
T Consensus 974 ~~tGflf~~-----~d~~aLa~AL~raL~~-----~~~~~~~~~~~~r~~m~~dFSW~~~A~~Y~~LY~~ 1033 (1036)
T PLN02316 974 EPNGFSFDG-----ADAAGVDYALNRAISA-----WYDGRDWFNSLCKRVMEQDWSWNRPALDYMELYHS 1033 (1036)
T ss_pred CCceEEeCC-----CCHHHHHHHHHHHHhh-----hhhhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 135666654 4789999999999964 34444445555565555677777777777765543
No 115
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases. AmsK is involved in the biosynthesis of amylovoran, which functions as a virulence factor. It functions as a glycosyl transferase which transfers galactose from UDP-galactose to a lipid-linked amylovoran-subunit precursor. The members of this family are found mainly in bacteria and Archaea.
Probab=97.48 E-value=0.0022 Score=65.23 Aligned_cols=112 Identities=15% Similarity=0.165 Sum_probs=74.8
Q ss_pred CCCeeeccccchhh---hhhccccccccccc----CchhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCC
Q 045267 341 GRGMLVPSWAPQAQ---VLSHGSTGGFLCHC----GWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANE 413 (482)
Q Consensus 341 ~~~v~~~~~ipq~~---lL~~~~~~~~I~HG----G~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 413 (482)
..++.+.+|+++.+ ++..+++.+||... --++++||+++|+|+|+-. -..+...+.+ .+.|..+...
T Consensus 288 ~~~V~f~G~v~~~e~~~~~~~~~~~v~v~~S~~Eg~p~~llEAma~G~PVIas~----vgg~~e~i~~-~~~G~l~~~~- 361 (407)
T cd04946 288 NISVNFTGELSNSEVYKLYKENPVDVFVNLSESEGLPVSIMEAMSFGIPVIATN----VGGTPEIVDN-GGNGLLLSKD- 361 (407)
T ss_pred CceEEEecCCChHHHHHHHhhcCCCEEEeCCccccccHHHHHHHHcCCCEEeCC----CCCcHHHhcC-CCcEEEeCCC-
Confidence 45788899999765 44433322666433 2458999999999999854 4456667767 5588877654
Q ss_pred CCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHH
Q 045267 414 NGIVGRDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLA 467 (482)
Q Consensus 414 ~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~ 467 (482)
-+.++++++|.++++|+ +.+ +++++..++.+.+.-+.+...++|+
T Consensus 362 ---~~~~~la~~I~~ll~~~---~~~---~~m~~~ar~~~~~~f~~~~~~~~~~ 406 (407)
T cd04946 362 ---PTPNELVSSLSKFIDNE---EEY---QTMREKAREKWEENFNASKNYREFA 406 (407)
T ss_pred ---CCHHHHHHHHHHHHhCH---HHH---HHHHHHHHHHHHHHcCHHHhHHHhc
Confidence 38899999999999876 322 2344444444445666666666554
No 116
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=97.37 E-value=0.012 Score=59.12 Aligned_cols=114 Identities=11% Similarity=0.116 Sum_probs=77.1
Q ss_pred CCCeeeccccchhh---hhhccccccccc----ccCc-hhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccC
Q 045267 341 GRGMLVPSWAPQAQ---VLSHGSTGGFLC----HCGW-NSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKAN 412 (482)
Q Consensus 341 ~~~v~~~~~ipq~~---lL~~~~~~~~I~----HGG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~ 412 (482)
+.++.+.+++|+.+ ++..++ ++|. +.|. .++.||+++|+|+|+... ..+...+++ -..|..+...
T Consensus 256 ~~~v~~~G~~~~~~l~~~~~~aD--v~v~pS~~~E~f~~~~lEAma~G~PVI~s~~----gg~~Eiv~~-~~~G~~l~~~ 328 (380)
T PRK15484 256 GDRCIMLGGQPPEKMHNYYPLAD--LVVVPSQVEEAFCMVAVEAMAAGKPVLASTK----GGITEFVLE-GITGYHLAEP 328 (380)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCC--EEEeCCCCccccccHHHHHHHcCCCEEEeCC----CCcHhhccc-CCceEEEeCC
Confidence 45788889998654 588899 5553 2444 577899999999999754 345556666 5677755433
Q ss_pred CCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhh
Q 045267 413 ENGIVGRDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKWNN 472 (482)
Q Consensus 413 ~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~ 472 (482)
-++++++++|.++++|+ +.+ ++++..++...+.-+-+..++++.+.+.+
T Consensus 329 ----~d~~~la~~I~~ll~d~---~~~----~~~~~ar~~~~~~fsw~~~a~~~~~~l~~ 377 (380)
T PRK15484 329 ----MTSDSIISDINRTLADP---ELT----QIAEQAKDFVFSKYSWEGVTQRFEEQIHN 377 (380)
T ss_pred ----CCHHHHHHHHHHHHcCH---HHH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 48899999999999986 332 23333333333456666777777776654
No 117
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=97.34 E-value=0.033 Score=57.82 Aligned_cols=81 Identities=10% Similarity=0.137 Sum_probs=59.1
Q ss_pred CCCeeeccccchhhhhhcccccccccc----cCchhHHHHhhcCCcEeeccccccchhhHHHHHhhcc------eeeeec
Q 045267 341 GRGMLVPSWAPQAQVLSHGSTGGFLCH----CGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVK------LALRPK 410 (482)
Q Consensus 341 ~~~v~~~~~ipq~~lL~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G------~G~~l~ 410 (482)
..+|.+.+...-.+++..++ ++|.- |--+++.||+++|+|+|+- |.......+++ .+ .|..++
T Consensus 353 ~~~V~f~G~~~v~~~l~~aD--v~vlpS~~Eg~p~~vlEAma~G~PVVat----d~g~~~elv~~-~~~~~~g~~G~lv~ 425 (475)
T cd03813 353 EDNVKFTGFQNVKEYLPKLD--VLVLTSISEGQPLVILEAMAAGIPVVAT----DVGSCRELIEG-ADDEALGPAGEVVP 425 (475)
T ss_pred CCeEEEcCCccHHHHHHhCC--EEEeCchhhcCChHHHHHHHcCCCEEEC----CCCChHHHhcC-CcccccCCceEEEC
Confidence 46888888666677888888 55432 4456899999999999984 44444444444 32 677665
Q ss_pred cCCCCccCHHHHHHHHHHHhcCC
Q 045267 411 ANENGIVGRDEIAKVVKALMEGE 433 (482)
Q Consensus 411 ~~~~~~~~~~~l~~ai~~vl~~~ 433 (482)
. -++++++++|.++++|+
T Consensus 426 ~-----~d~~~la~ai~~ll~~~ 443 (475)
T cd03813 426 P-----ADPEALARAILRLLKDP 443 (475)
T ss_pred C-----CCHHHHHHHHHHHhcCH
Confidence 4 37899999999999986
No 118
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=97.33 E-value=0.024 Score=51.65 Aligned_cols=49 Identities=20% Similarity=0.132 Sum_probs=36.0
Q ss_pred CCCeeeccccch----hhhhhcccccccccccC----chhHHHHhhcCCcEeecccccc
Q 045267 341 GRGMLVPSWAPQ----AQVLSHGSTGGFLCHCG----WNSVLESVVNGVPLIAWPLYAE 391 (482)
Q Consensus 341 ~~~v~~~~~ipq----~~lL~~~~~~~~I~HGG----~gs~~eal~~GvP~v~~P~~~D 391 (482)
..|+.+.+++++ ..++..++ ++|+-.. .+++.||+.+|+|+|+.+..+.
T Consensus 160 ~~~v~~~~~~~~~~~~~~~~~~~d--i~l~~~~~e~~~~~~~Eam~~g~pvi~s~~~~~ 216 (229)
T cd01635 160 LDRVIFLGGLDPEELLALLLAAAD--VFVLPSLREGFGLVVLEAMACGLPVIATDVGGP 216 (229)
T ss_pred cccEEEeCCCCcHHHHHHHhhcCC--EEEecccccCcChHHHHHHhCCCCEEEcCCCCc
Confidence 458888888742 22444477 7777665 7899999999999999876543
No 119
>PF13844 Glyco_transf_41: Glycosyl transferase family 41; PDB: 3PE4_C 3PE3_D 3TAX_C 2XGO_A 2JLB_B 2XGM_A 2VSY_B 2XGS_B 2VSN_A.
Probab=97.24 E-value=0.0053 Score=62.28 Aligned_cols=137 Identities=22% Similarity=0.240 Sum_probs=78.9
Q ss_pred CCcEEEEeccCCCCCCHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCcccccCCCCCCCCCCchhHHhhh-----cCCCe
Q 045267 270 LGSVLFVSFGSGGTLSCEQLNELALGLEMSEQRFLWVVRSPNNAANSTFFSVNSHKDPYDFLPKGFLDRT-----KGRGM 344 (482)
Q Consensus 270 ~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~-----~~~~v 344 (482)
+..++|.||......+++.+..-.+.|+..+...+|....+.. -.+.+.+.. ....+
T Consensus 283 ~d~vvF~~fn~~~KI~p~~l~~W~~IL~~vP~S~L~L~~~~~~------------------~~~~l~~~~~~~Gv~~~Ri 344 (468)
T PF13844_consen 283 EDAVVFGSFNNLFKISPETLDLWARILKAVPNSRLWLLRFPAS------------------GEARLRRRFAAHGVDPDRI 344 (468)
T ss_dssp SSSEEEEE-S-GGG--HHHHHHHHHHHHHSTTEEEEEEETSTT------------------HHHHHHHHHHHTTS-GGGE
T ss_pred CCceEEEecCccccCCHHHHHHHHHHHHhCCCcEEEEeeCCHH------------------HHHHHHHHHHHcCCChhhE
Confidence 3459999999999999999999999999999999998865421 012333332 34567
Q ss_pred eeccccchhhhh---hcccccccc---cccCchhHHHHhhcCCcEeecccccc-chhhHHHHHhhcceeeeeccCCCCcc
Q 045267 345 LVPSWAPQAQVL---SHGSTGGFL---CHCGWNSVLESVVNGVPLIAWPLYAE-QKMNAVILTEDVKLALRPKANENGIV 417 (482)
Q Consensus 345 ~~~~~ipq~~lL---~~~~~~~~I---~HGG~gs~~eal~~GvP~v~~P~~~D-Q~~na~rv~~~~G~G~~l~~~~~~~~ 417 (482)
++.++.|+.+-| ..+| +++ ..+|.+|++|||..|||+|.+|--.= ...-+..+.. +|+...+- .
T Consensus 345 ~f~~~~~~~ehl~~~~~~D--I~LDT~p~nG~TTt~dALwmGVPvVTl~G~~~~sR~~aSiL~~-lGl~ElIA------~ 415 (468)
T PF13844_consen 345 IFSPVAPREEHLRRYQLAD--ICLDTFPYNGGTTTLDALWMGVPVVTLPGETMASRVGASILRA-LGLPELIA------D 415 (468)
T ss_dssp EEEE---HHHHHHHGGG-S--EEE--SSS--SHHHHHHHHHT--EEB---SSGGGSHHHHHHHH-HT-GGGB-------S
T ss_pred EEcCCCCHHHHHHHhhhCC--EEeeCCCCCCcHHHHHHHHcCCCEEeccCCCchhHHHHHHHHH-cCCchhcC------C
Confidence 777777755544 4466 443 46899999999999999999995332 2334456666 88876554 3
Q ss_pred CHHHHHHHHHHHhcCC
Q 045267 418 GRDEIAKVVKALMEGE 433 (482)
Q Consensus 418 ~~~~l~~ai~~vl~~~ 433 (482)
+.++-.+...++-+|.
T Consensus 416 s~~eYv~~Av~La~D~ 431 (468)
T PF13844_consen 416 SEEEYVEIAVRLATDP 431 (468)
T ss_dssp SHHHHHHHHHHHHH-H
T ss_pred CHHHHHHHHHHHhCCH
Confidence 4455444444566665
No 120
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltra
Probab=97.23 E-value=0.058 Score=53.85 Aligned_cols=98 Identities=9% Similarity=0.130 Sum_probs=66.2
Q ss_pred CCCeeeccccch-hhhhhcccccccccc--cCchhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCCCCcc
Q 045267 341 GRGMLVPSWAPQ-AQVLSHGSTGGFLCH--CGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENGIV 417 (482)
Q Consensus 341 ~~~v~~~~~ipq-~~lL~~~~~~~~I~H--GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~ 417 (482)
..++.+.++.++ ..++..+++-++.++ |...++.||+++|+|+|+..... .....+.+ -..|..++. -
T Consensus 260 ~~~v~~~g~~~~~~~~~~~ad~~v~~S~~Eg~~~~~lEAma~G~PvI~~~~~~---g~~~~v~~-~~~G~lv~~-----~ 330 (372)
T cd04949 260 EDYVFLKGYTRDLDEVYQKAQLSLLTSQSEGFGLSLMEALSHGLPVISYDVNY---GPSEIIED-GENGYLVPK-----G 330 (372)
T ss_pred cceEEEcCCCCCHHHHHhhhhEEEecccccccChHHHHHHhCCCCEEEecCCC---CcHHHccc-CCCceEeCC-----C
Confidence 456777777664 567888995444454 33558999999999999964321 23445555 567776654 3
Q ss_pred CHHHHHHHHHHHhcCCc-hHHHHHHHHHHHH
Q 045267 418 GRDEIAKVVKALMEGEQ-GKEVRNKMKDLKD 447 (482)
Q Consensus 418 ~~~~l~~ai~~vl~~~~-~~~~r~~a~~l~~ 447 (482)
+.++++++|.+++.|+. -+.+.+++++.++
T Consensus 331 d~~~la~~i~~ll~~~~~~~~~~~~a~~~~~ 361 (372)
T cd04949 331 DIEALAEAIIELLNDPKLLQKFSEAAYENAE 361 (372)
T ss_pred cHHHHHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 78999999999999873 2345555554433
No 121
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.11 E-value=0.21 Score=52.05 Aligned_cols=114 Identities=14% Similarity=0.108 Sum_probs=72.6
Q ss_pred CCCeeeccccch-hhhhhccccccccc---ccC-chhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCCCC
Q 045267 341 GRGMLVPSWAPQ-AQVLSHGSTGGFLC---HCG-WNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENG 415 (482)
Q Consensus 341 ~~~v~~~~~ipq-~~lL~~~~~~~~I~---HGG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~ 415 (482)
.++|.+.+|..+ ..+|..++ +||. .-| -+++.||+++|+|+|+... ..+...+.+ -..|..++..
T Consensus 454 ~d~V~FlG~~~Dv~~~LaaAD--VfVlPS~~EGfp~vlLEAMA~GlPVVATdv----GG~~EiV~d-G~nG~LVp~~--- 523 (578)
T PRK15490 454 LERILFVGASRDVGYWLQKMN--VFILFSRYEGLPNVLIEAQMVGVPVISTPA----GGSAECFIE-GVSGFILDDA--- 523 (578)
T ss_pred CCcEEECCChhhHHHHHHhCC--EEEEcccccCccHHHHHHHHhCCCEEEeCC----CCcHHHccc-CCcEEEECCC---
Confidence 467888888653 45788899 7774 345 5599999999999998754 456667777 5778877654
Q ss_pred ccCHHHHHHHH---HHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhh
Q 045267 416 IVGRDEIAKVV---KALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKWNN 472 (482)
Q Consensus 416 ~~~~~~l~~ai---~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~ 472 (482)
+.+.+.+++ .++... .+...++++..++...+.-+.+..++++.+-+++
T Consensus 524 --D~~aLa~ai~lA~aL~~l------l~~~~~mg~~ARe~V~e~FS~e~Mv~~y~ki~~~ 575 (578)
T PRK15490 524 --QTVNLDQACRYAEKLVNL------WRSRTGICQQTQSFLQERFTVEHMVGTFVKTIAS 575 (578)
T ss_pred --ChhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Confidence 344455544 222221 1122234444444444677888888887776654
No 122
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A.
Probab=96.98 E-value=0.0032 Score=52.88 Aligned_cols=80 Identities=19% Similarity=0.231 Sum_probs=50.9
Q ss_pred CCCeeeccccc-hhhhhhcccccccccc--cC-chhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCCCCc
Q 045267 341 GRGMLVPSWAP-QAQVLSHGSTGGFLCH--CG-WNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENGI 416 (482)
Q Consensus 341 ~~~v~~~~~ip-q~~lL~~~~~~~~I~H--GG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~ 416 (482)
..|+.+.+|++ ..+++..+++.+..+. .| -+++.|++++|+|+|+.+. .....++. .+.|..+ .
T Consensus 52 ~~~v~~~g~~~e~~~~l~~~dv~l~p~~~~~~~~~k~~e~~~~G~pvi~~~~-----~~~~~~~~-~~~~~~~--~---- 119 (135)
T PF13692_consen 52 RPNVRFHGFVEELPEILAAADVGLIPSRFNEGFPNKLLEAMAAGKPVIASDN-----GAEGIVEE-DGCGVLV--A---- 119 (135)
T ss_dssp HCTEEEE-S-HHHHHHHHC-SEEEE-BSS-SCC-HHHHHHHCTT--EEEEHH-----HCHCHS----SEEEE---T----
T ss_pred CCCEEEcCCHHHHHHHHHhCCEEEEEeeCCCcCcHHHHHHHHhCCCEEECCc-----chhhheee-cCCeEEE--C----
Confidence 35899999987 4567888997666542 23 4899999999999999765 23335555 6788777 3
Q ss_pred cCHHHHHHHHHHHhcC
Q 045267 417 VGRDEIAKVVKALMEG 432 (482)
Q Consensus 417 ~~~~~l~~ai~~vl~~ 432 (482)
-+++++.++|.++++|
T Consensus 120 ~~~~~l~~~i~~l~~d 135 (135)
T PF13692_consen 120 NDPEELAEAIERLLND 135 (135)
T ss_dssp T-HHHHHHHHHHHHH-
T ss_pred CCHHHHHHHHHHHhcC
Confidence 3899999999999865
No 123
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Proteins containign this domain transfer UDP, ADP, GDP or CMP linked sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. The bacterial enzymes are involved in various biosynthetic processes that include exopolysaccharide biosynthesis, lipopolysaccharide core biosynthesis and the biosynthesis of the slime polysaccaride colanic acid. Mutations in this domain of the human N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein are the cause of paroxysmal nocturnal hemoglobinuria (PNH), an acquired hemolytic blood disorder characterised by venous thrombosis, erythrocyte hemolysis, infections and defective hematopoiesis.; GO: 0009058 biosynthetic process; PDB: 2L7C_A 2IV3_B 2IUY_B 2XA9_A 2XA1_B 2X6R_A 2XMP_B 2XA2_B 2X6Q_A 3QHP_B ....
Probab=96.97 E-value=0.0051 Score=54.06 Aligned_cols=81 Identities=19% Similarity=0.259 Sum_probs=63.0
Q ss_pred CCCeeeccccch---hhhhhcccccccccc----cCchhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCC
Q 045267 341 GRGMLVPSWAPQ---AQVLSHGSTGGFLCH----CGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANE 413 (482)
Q Consensus 341 ~~~v~~~~~ipq---~~lL~~~~~~~~I~H----GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 413 (482)
..++.+.+++++ ..++..++ ++|+. |+..++.||+++|+|+|+- |...+...+.+ .+.|..++..
T Consensus 72 ~~~i~~~~~~~~~~l~~~~~~~d--i~v~~s~~e~~~~~~~Ea~~~g~pvI~~----~~~~~~e~~~~-~~~g~~~~~~- 143 (172)
T PF00534_consen 72 KENIIFLGYVPDDELDELYKSSD--IFVSPSRNEGFGLSLLEAMACGCPVIAS----DIGGNNEIIND-GVNGFLFDPN- 143 (172)
T ss_dssp GTTEEEEESHSHHHHHHHHHHTS--EEEE-BSSBSS-HHHHHHHHTT-EEEEE----SSTHHHHHSGT-TTSEEEESTT-
T ss_pred cccccccccccccccccccccce--eccccccccccccccccccccccceeec----cccCCceeecc-ccceEEeCCC-
Confidence 468888899983 45788888 77766 6677999999999999974 56677777777 6778888753
Q ss_pred CCccCHHHHHHHHHHHhcCC
Q 045267 414 NGIVGRDEIAKVVKALMEGE 433 (482)
Q Consensus 414 ~~~~~~~~l~~ai~~vl~~~ 433 (482)
+.++++++|.+++.++
T Consensus 144 ----~~~~l~~~i~~~l~~~ 159 (172)
T PF00534_consen 144 ----DIEELADAIEKLLNDP 159 (172)
T ss_dssp ----SHHHHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHCCH
Confidence 7899999999999875
No 124
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=96.80 E-value=0.0076 Score=59.46 Aligned_cols=111 Identities=14% Similarity=0.232 Sum_probs=79.3
Q ss_pred CCeeeccccchhhhhhcc--cccccccc-------cCc------hhHHHHhhcCCcEeeccccccchhhHHHHHhhccee
Q 045267 342 RGMLVPSWAPQAQVLSHG--STGGFLCH-------CGW------NSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLA 406 (482)
Q Consensus 342 ~~v~~~~~ipq~~lL~~~--~~~~~I~H-------GG~------gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G 406 (482)
+|+.+.+|+|++++...- +.+++... +.+ +-+.+++++|+|+|+. ++...+..+++ .++|
T Consensus 207 ~~V~f~G~~~~eel~~~l~~~~gLv~~~~~~~~~~~~y~~~~~P~K~~~ymA~G~PVI~~----~~~~~~~~V~~-~~~G 281 (333)
T PRK09814 207 ANISYKGWFDPEELPNELSKGFGLVWDGDTNDGEYGEYYKYNNPHKLSLYLAAGLPVIVW----SKAAIADFIVE-NGLG 281 (333)
T ss_pred CCeEEecCCCHHHHHHHHhcCcCeEEcCCCCCccchhhhhccchHHHHHHHHCCCCEEEC----CCccHHHHHHh-CCce
Confidence 589899999987764321 33232221 111 1277789999999984 56788899999 8999
Q ss_pred eeeccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHH
Q 045267 407 LRPKANENGIVGRDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASK 469 (482)
Q Consensus 407 ~~l~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~ 469 (482)
..++ +.+++.+++.++. +++.+.|++|++++++.+++ |.-..+++++++..
T Consensus 282 ~~v~-------~~~el~~~l~~~~-~~~~~~m~~n~~~~~~~~~~----g~~~~~~~~~~~~~ 332 (333)
T PRK09814 282 FVVD-------SLEELPEIIDNIT-EEEYQEMVENVKKISKLLRN----GYFTKKALVDAIKE 332 (333)
T ss_pred EEeC-------CHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHhc----chhHHHHHHHHHhc
Confidence 9986 3468888888753 33345799999999999994 66666677766543
No 125
>PF06722 DUF1205: Protein of unknown function (DUF1205); InterPro: IPR010610 This entry represents a conserved region of unknown function within bacterial glycosyl transferases. Many proteins containing this domain are members of the glycosyl transferase family 28 IPR004276 from INTERPRO.; PDB: 3OTH_A 3OTG_A 3OTI_A 3D0R_A 3D0Q_B 2P6P_A 3UYK_A 3UYL_B 3TSA_B 2YJN_A.
Probab=96.59 E-value=0.0026 Score=50.07 Aligned_cols=58 Identities=14% Similarity=0.176 Sum_probs=46.1
Q ss_pred ccccccccccccCCCCCcEEEEeccCCCCC---C--HHHHHHHHHHHHhcCCceEEEEeCCCC
Q 045267 255 ESKNEGCLKWLDDQPLGSVLFVSFGSGGTL---S--CEQLNELALGLEMSEQRFLWVVRSPNN 312 (482)
Q Consensus 255 ~~~~~~~~~~l~~~~~~~~v~vs~GS~~~~---~--~~~~~~~~~al~~~~~~~i~~~~~~~~ 312 (482)
.+.+..+.+|+...++|+.|+||+||.... . ...+..++++++.++..+|.++.....
T Consensus 24 yNG~~~~P~Wl~~~~~RpRVcvT~G~~~~~~~g~~~~~~l~~ll~ala~ldvEvV~a~~~~~~ 86 (97)
T PF06722_consen 24 YNGPAVVPDWLLEPPGRPRVCVTLGTSVRMFFGPGGVPLLRRLLEALAGLDVEVVVALPAAQR 86 (97)
T ss_dssp --SSEEEEGGGSSSTSSEEEEEEETHHHCHHHSCHHHCHHHHHHHHHHTSSSEEEEEETTCCC
T ss_pred CCCCCCCCcccccCCCCCEEEEEcCCCccccccccchHHHHHHHHHHhhCCcEEEEECCHHHH
Confidence 345577778999999999999999997443 2 247888999999999999999986543
No 126
>PRK14099 glycogen synthase; Provisional
Probab=96.52 E-value=0.86 Score=47.44 Aligned_cols=40 Identities=13% Similarity=0.051 Sum_probs=31.1
Q ss_pred ccCCEEEEEcCC------CCCChHHHHHHHHHHHhcCCCEEEEEcCC
Q 045267 8 QAAPHIVLLPSP------GMGHLIPLIEFAKRLVHRHHFLVTFFIPS 48 (482)
Q Consensus 8 ~~~~~ili~~~~------~~GH~~P~l~La~~L~~r~GH~Vt~~~~~ 48 (482)
|++|||++++.- +.|=-.-.-+|.++|+++ ||+|.++.|.
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~-g~~v~v~~P~ 46 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAH-GVEVRTLVPG 46 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHC-CCcEEEEeCC
Confidence 567899998762 234445577888999888 9999999985
No 127
>COG1817 Uncharacterized protein conserved in archaea [Function unknown]
Probab=96.00 E-value=1.5 Score=41.75 Aligned_cols=107 Identities=12% Similarity=0.033 Sum_probs=68.0
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCCchhhhhhhhcCCCceeEEEec-CCCCCCCcchhhHHHHHHHHHhh
Q 045267 18 SPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPPSEAQKSTLESLPSSINSVFLP-VSLNDVAEDARAETVISLTVLRS 96 (482)
Q Consensus 18 ~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~ 96 (482)
.+..-|+-=+-.|.++|.++ ||+|.+.+-+.. ....+...+ ||.+..+. -.. ......+..+..+.
T Consensus 7 I~n~~hvhfFk~lI~elekk-G~ev~iT~rd~~----~v~~LLd~y--gf~~~~Igk~g~------~tl~~Kl~~~~eR~ 73 (346)
T COG1817 7 IGNPPHVHFFKNLIWELEKK-GHEVLITCRDFG----VVTELLDLY--GFPYKSIGKHGG------VTLKEKLLESAERV 73 (346)
T ss_pred cCCcchhhHHHHHHHHHHhC-CeEEEEEEeecC----cHHHHHHHh--CCCeEeecccCC------ccHHHHHHHHHHHH
Confidence 35556788889999999988 999999875532 233444433 45555554 211 11111222222222
Q ss_pred hHHHHHHHHHHhhCCCccEEEeCCCCccHHHHHHHcCCccEEEccch
Q 045267 97 LPCLRQELTSLVAKATVAALVVDLFGTDAFDVAQEFNISPYIFYPST 143 (482)
Q Consensus 97 ~~~l~~~l~~~~~~~~pD~vi~D~~~~~~~~~A~~lgIP~v~~~~~~ 143 (482)
-.+.+++.+++||+.+. -.++.+..+|.-+|+|.+++.-+.
T Consensus 74 -----~~L~ki~~~~kpdv~i~-~~s~~l~rvafgLg~psIi~~D~e 114 (346)
T COG1817 74 -----YKLSKIIAEFKPDVAIG-KHSPELPRVAFGLGIPSIIFVDNE 114 (346)
T ss_pred -----HHHHHHHhhcCCceEee-cCCcchhhHHhhcCCceEEecCCh
Confidence 22345556779999999 557788999999999999886653
No 128
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=95.71 E-value=0.021 Score=48.89 Aligned_cols=95 Identities=18% Similarity=0.148 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcCCCEEEEEcCCCCCCchhhhhhhhcCCCceeEEEecCCCCCCCcchhhHHHHHHHHHhhhHHHHHHHH
Q 045267 26 PLIEFAKRLVHRHHFLVTFFIPSDGPPSEAQKSTLESLPSSINSVFLPVSLNDVAEDARAETVISLTVLRSLPCLRQELT 105 (482)
Q Consensus 26 P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 105 (482)
-+..|+++|.++ ||+|+++++..... .......++.+..++...... ....... . ..+.
T Consensus 6 ~~~~l~~~L~~~-G~~V~v~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--------~----~~~~ 64 (160)
T PF13579_consen 6 YVRELARALAAR-GHEVTVVTPQPDPE------DDEEEEDGVRVHRLPLPRRPW--PLRLLRF--------L----RRLR 64 (160)
T ss_dssp HHHHHHHHHHHT-T-EEEEEEE---GG------G-SEEETTEEEEEE--S-SSS--GGGHCCH--------H----HHHH
T ss_pred HHHHHHHHHHHC-CCEEEEEecCCCCc------ccccccCCceEEeccCCccch--hhhhHHH--------H----HHHH
Confidence 467899999988 99999999654322 111113467777777221111 1110000 1 1223
Q ss_pred HHh--hCCCccEEEeCCCCcc-HHHHHH-HcCCccEEEcc
Q 045267 106 SLV--AKATVAALVVDLFGTD-AFDVAQ-EFNISPYIFYP 141 (482)
Q Consensus 106 ~~~--~~~~pD~vi~D~~~~~-~~~~A~-~lgIP~v~~~~ 141 (482)
+++ ...+||+|.+...... ...+++ ..++|++....
T Consensus 65 ~~l~~~~~~~Dvv~~~~~~~~~~~~~~~~~~~~p~v~~~h 104 (160)
T PF13579_consen 65 RLLAARRERPDVVHAHSPTAGLVAALARRRRGIPLVVTVH 104 (160)
T ss_dssp HHCHHCT---SEEEEEHHHHHHHHHHHHHHHT--EEEE-S
T ss_pred HHHhhhccCCeEEEecccchhHHHHHHHHccCCcEEEEEC
Confidence 333 5679999998773322 223444 78999887554
No 129
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.69 E-value=0.31 Score=50.02 Aligned_cols=133 Identities=15% Similarity=0.124 Sum_probs=91.5
Q ss_pred CCcEEEEeccCCCCCCHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCcccccCCCCCCCCCCchhHHhhh-----cCCCe
Q 045267 270 LGSVLFVSFGSGGTLSCEQLNELALGLEMSEQRFLWVVRSPNNAANSTFFSVNSHKDPYDFLPKGFLDRT-----KGRGM 344 (482)
Q Consensus 270 ~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~-----~~~~v 344 (482)
++.+||+||+-+....++.+..-..-|+..+.-++|..+++.. ..+-..+++.. ....+
T Consensus 428 ~~avVf~c~~n~~K~~pev~~~wmqIL~~vP~Svl~L~~~~~~----------------~~~~~~l~~la~~~Gv~~eRL 491 (620)
T COG3914 428 EDAVVFCCFNNYFKITPEVFALWMQILSAVPNSVLLLKAGGDD----------------AEINARLRDLAEREGVDSERL 491 (620)
T ss_pred CCeEEEEecCCcccCCHHHHHHHHHHHHhCCCcEEEEecCCCc----------------HHHHHHHHHHHHHcCCChhhe
Confidence 4569999999999999999999888888999999999887432 11222333332 34456
Q ss_pred eeccccc---hhhhhhccccccccc---ccCchhHHHHhhcCCcEeeccccccchh--hHHHHHhhcceeeeeccCCCCc
Q 045267 345 LVPSWAP---QAQVLSHGSTGGFLC---HCGWNSVLESVVNGVPLIAWPLYAEQKM--NAVILTEDVKLALRPKANENGI 416 (482)
Q Consensus 345 ~~~~~ip---q~~lL~~~~~~~~I~---HGG~gs~~eal~~GvP~v~~P~~~DQ~~--na~rv~~~~G~G~~l~~~~~~~ 416 (482)
++.+-.| +.+=++.+| +|+. =||+.|..|+|-.|||+|..+ ++|+. |+..+...+|+-..+-.+
T Consensus 492 ~f~p~~~~~~h~a~~~iAD--lvLDTyPY~g~TTa~daLwm~vPVlT~~--G~~FasR~~~si~~~agi~e~vA~s---- 563 (620)
T COG3914 492 RFLPPAPNEDHRARYGIAD--LVLDTYPYGGHTTASDALWMGVPVLTRV--GEQFASRNGASIATNAGIPELVADS---- 563 (620)
T ss_pred eecCCCCCHHHHHhhchhh--eeeecccCCCccchHHHHHhcCceeeec--cHHHHHhhhHHHHHhcCCchhhcCC----
Confidence 6666555 445556677 6664 599999999999999999875 77775 444444325655444322
Q ss_pred cCHHHHHHHHH
Q 045267 417 VGRDEIAKVVK 427 (482)
Q Consensus 417 ~~~~~l~~ai~ 427 (482)
.++-++.+|.
T Consensus 564 -~~dYV~~av~ 573 (620)
T COG3914 564 -RADYVEKAVA 573 (620)
T ss_pred -HHHHHHHHHH
Confidence 3466666663
No 130
>PHA01633 putative glycosyl transferase group 1
Probab=95.53 E-value=0.19 Score=49.34 Aligned_cols=86 Identities=13% Similarity=0.068 Sum_probs=54.8
Q ss_pred CCCeeec---cccchh---hhhhcccccccccc---cC-chhHHHHhhcCCcEeeccc------cccc------hhhHHH
Q 045267 341 GRGMLVP---SWAPQA---QVLSHGSTGGFLCH---CG-WNSVLESVVNGVPLIAWPL------YAEQ------KMNAVI 398 (482)
Q Consensus 341 ~~~v~~~---~~ipq~---~lL~~~~~~~~I~H---GG-~gs~~eal~~GvP~v~~P~------~~DQ------~~na~r 398 (482)
..++.+. +++++. .++..++ +||.- =| -.++.||+++|+|+|+--. .+|+ .++...
T Consensus 200 ~~~V~f~g~~G~~~~~dl~~~y~~aD--ifV~PS~~EgfGlvlLEAMA~G~PVVas~~~~l~Ei~g~~~~~Li~~~~v~~ 277 (335)
T PHA01633 200 PANVHFVAEFGHNSREYIFAFYGAMD--FTIVPSGTEGFGMPVLESMAMGTPVIHQLMPPLDEFTSWQWNLLIKSSKVEE 277 (335)
T ss_pred CCcEEEEecCCCCCHHHHHHHHHhCC--EEEECCccccCCHHHHHHHHcCCCEEEccCCCceeecCCccceeeCCCCHHH
Confidence 3467666 455544 5678888 77753 34 4478899999999998532 3333 223332
Q ss_pred HHh-hcceeeeeccCCCCccCHHHHHHHHHHHhcCC
Q 045267 399 LTE-DVKLALRPKANENGIVGRDEIAKVVKALMEGE 433 (482)
Q Consensus 399 v~~-~~G~G~~l~~~~~~~~~~~~l~~ai~~vl~~~ 433 (482)
..+ +.|.|..++ . .+++++++++.+++...
T Consensus 278 ~~~~~~g~g~~~~--~---~d~~~la~ai~~~~~~~ 308 (335)
T PHA01633 278 YYDKEHGQKWKIH--K---FQIEDMANAIILAFELQ 308 (335)
T ss_pred hcCcccCceeeec--C---CCHHHHHHHHHHHHhcc
Confidence 222 145555554 3 68999999999996543
No 131
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=95.45 E-value=0.16 Score=42.70 Aligned_cols=103 Identities=14% Similarity=0.100 Sum_probs=61.9
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCCchhhhhhhhcCCCceeEEEecCCCCCCCcchhhHHHHHH
Q 045267 12 HIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPPSEAQKSTLESLPSSINSVFLPVSLNDVAEDARAETVISL 91 (482)
Q Consensus 12 ~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 91 (482)
||++++.....| ...+++.|.++ ||+|++++.....+. .. ...++.+..++..... ...
T Consensus 1 KIl~i~~~~~~~---~~~~~~~L~~~-g~~V~ii~~~~~~~~-----~~--~~~~i~~~~~~~~~k~----------~~~ 59 (139)
T PF13477_consen 1 KILLIGNTPSTF---IYNLAKELKKR-GYDVHIITPRNDYEK-----YE--IIEGIKVIRLPSPRKS----------PLN 59 (139)
T ss_pred CEEEEecCcHHH---HHHHHHHHHHC-CCEEEEEEcCCCchh-----hh--HhCCeEEEEecCCCCc----------cHH
Confidence 377777666666 45779999988 999999998543210 00 1346777777522111 111
Q ss_pred HHHhhhHHHHHHHHHHhhCCCccEEEeCCCCcc---HHHHHHHcC-CccEEEcc
Q 045267 92 TVLRSLPCLRQELTSLVAKATVAALVVDLFGTD---AFDVAQEFN-ISPYIFYP 141 (482)
Q Consensus 92 ~~~~~~~~l~~~l~~~~~~~~pD~vi~D~~~~~---~~~~A~~lg-IP~v~~~~ 141 (482)
.+. . . .+..++++.+||+|.+...... +..++...+ +|++....
T Consensus 60 ~~~-~----~-~l~k~ik~~~~DvIh~h~~~~~~~~~~l~~~~~~~~~~i~~~h 107 (139)
T PF13477_consen 60 YIK-Y----F-RLRKIIKKEKPDVIHCHTPSPYGLFAMLAKKLLKNKKVIYTVH 107 (139)
T ss_pred HHH-H----H-HHHHHhccCCCCEEEEecCChHHHHHHHHHHHcCCCCEEEEec
Confidence 111 1 1 2345556679999988876543 234667778 88775443
No 132
>PRK10017 colanic acid biosynthesis protein; Provisional
Probab=94.86 E-value=0.67 Score=47.21 Aligned_cols=86 Identities=14% Similarity=0.126 Sum_probs=62.9
Q ss_pred hhhhhcccccccccccCchhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeee-eccCCCCccCHHHHHHHHHHHhc
Q 045267 353 AQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALR-PKANENGIVGRDEIAKVVKALME 431 (482)
Q Consensus 353 ~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~-l~~~~~~~~~~~~l~~ai~~vl~ 431 (482)
..++++++ ++|..= .=+..-|+..|||.+.+++ | +-....+.+ +|.... .+.++ ++.++|.+.+.++++
T Consensus 322 ~~iIs~~d--l~ig~R-lHa~I~a~~~gvP~i~i~Y--~-~K~~~~~~~-lg~~~~~~~~~~---l~~~~Li~~v~~~~~ 391 (426)
T PRK10017 322 GKILGACE--LTVGTR-LHSAIISMNFGTPAIAINY--E-HKSAGIMQQ-LGLPEMAIDIRH---LLDGSLQAMVADTLG 391 (426)
T ss_pred HHHHhhCC--EEEEec-chHHHHHHHcCCCEEEeee--h-HHHHHHHHH-cCCccEEechhh---CCHHHHHHHHHHHHh
Confidence 37888898 888432 3356678899999999998 3 444455577 888866 67777 999999999999998
Q ss_pred CCchHHHHHHHHHHHHHHH
Q 045267 432 GEQGKEVRNKMKDLKDAAA 450 (482)
Q Consensus 432 ~~~~~~~r~~a~~l~~~~~ 450 (482)
|.+ +++++.++-.++++
T Consensus 392 ~r~--~~~~~l~~~v~~~r 408 (426)
T PRK10017 392 QLP--ALNARLAEAVSRER 408 (426)
T ss_pred CHH--HHHHHHHHHHHHHH
Confidence 863 56655555555555
No 133
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=94.74 E-value=0.38 Score=42.27 Aligned_cols=115 Identities=15% Similarity=0.040 Sum_probs=61.4
Q ss_pred EcCCCCCChHHHHHHHHHH-HhcCCCEEEEEcCCCCCCchhhhhhhhcCCCceeEEEec-CCCCCCCcchhhHHHHHHHH
Q 045267 16 LPSPGMGHLIPLIEFAKRL-VHRHHFLVTFFIPSDGPPSEAQKSTLESLPSSINSVFLP-VSLNDVAEDARAETVISLTV 93 (482)
Q Consensus 16 ~~~~~~GH~~P~l~La~~L-~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~ 93 (482)
+..++.||+.=|+.|.+.+ .++..++..+++......................+..++ ...-. ......+..++
T Consensus 3 ~v~gsGGHt~eml~L~~~~~~~~~~~~~~ivt~~d~~S~~k~~~~~~~~~~~~~~~~~~r~r~v~----q~~~~~~~~~l 78 (170)
T PF08660_consen 3 VVLGSGGHTAEMLRLLKALDNDRYQPRTYIVTEGDKQSRSKAEQLEKSSSKRHKILEIPRAREVG----QSYLTSIFTTL 78 (170)
T ss_pred EEEcCcHHHHHHHHHHHHhhhhcCCCcEEEEEcCCcccHHHHHHHHHhccccceeeccceEEEec----hhhHhhHHHHH
Confidence 4457889999999999999 444346666666554333222222323222222344444 21111 11111222222
Q ss_pred HhhhHHHHHHHHHHhhCCCccEEEeCCCCccH--HHHHHHc------CCccEEE
Q 045267 94 LRSLPCLRQELTSLVAKATVAALVVDLFGTDA--FDVAQEF------NISPYIF 139 (482)
Q Consensus 94 ~~~~~~l~~~l~~~~~~~~pD~vi~D~~~~~~--~~~A~~l------gIP~v~~ 139 (482)
......+.-.. +.+||+||+.....+. ..+|..+ |.++|.+
T Consensus 79 ~~~~~~~~il~-----r~rPdvii~nGpg~~vp~~~~~~l~~~~~~~~~kiIyI 127 (170)
T PF08660_consen 79 RAFLQSLRILR-----RERPDVIISNGPGTCVPVCLAAKLLRLLGLRGSKIIYI 127 (170)
T ss_pred HHHHHHHHHHH-----HhCCCEEEEcCCceeeHHHHHHHHHHHhhccCCcEEEE
Confidence 22222332222 3489999999877664 3678888 8887764
No 134
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=94.30 E-value=0.55 Score=41.13 Aligned_cols=92 Identities=12% Similarity=0.119 Sum_probs=49.1
Q ss_pred CCEEEEEcCCCCCCchhhhhhhhcCCCceeEEEecCCCCCCCcchhhHHHHHHHHHhhhHHHHHHHHHHh-hCCCccEEE
Q 045267 39 HFLVTFFIPSDGPPSEAQKSTLESLPSSINSVFLPVSLNDVAEDARAETVISLTVLRSLPCLRQELTSLV-AKATVAALV 117 (482)
Q Consensus 39 GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~pD~vi 117 (482)
||+|+|+|....... +.|++...........+..--....+...+.... .....+.++. +.+.||+||
T Consensus 3 gh~v~fl~~~~~~~~----------~~GV~~~~y~~~~~~~~~~~~~~~~~e~~~~rg~-av~~a~~~L~~~Gf~PDvI~ 71 (171)
T PF12000_consen 3 GHEVVFLTERKRPPI----------PPGVRVVRYRPPRGPTPGTHPYVRDFEAAVLRGQ-AVARAARQLRAQGFVPDVII 71 (171)
T ss_pred CCEEEEEecCCCCCC----------CCCcEEEEeCCCCCCCCCCCcccccHHHHHHHHH-HHHHHHHHHHHcCCCCCEEE
Confidence 999999995543331 2366766665321111111111222222222222 2222222332 257899999
Q ss_pred eCCCCccHHHHHHHc-CCccEEEcc
Q 045267 118 VDLFGTDAFDVAQEF-NISPYIFYP 141 (482)
Q Consensus 118 ~D~~~~~~~~~A~~l-gIP~v~~~~ 141 (482)
...-.-.++.+-+.+ ++|.+.+.=
T Consensus 72 ~H~GWGe~Lflkdv~P~a~li~Y~E 96 (171)
T PF12000_consen 72 AHPGWGETLFLKDVFPDAPLIGYFE 96 (171)
T ss_pred EcCCcchhhhHHHhCCCCcEEEEEE
Confidence 999665567788888 899777533
No 135
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.23 E-value=1.8 Score=44.96 Aligned_cols=123 Identities=20% Similarity=0.255 Sum_probs=82.5
Q ss_pred CCcEEEEeccCCCCCCHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCcccccCCCCCCCCCCchhHHhh-----hcCCCe
Q 045267 270 LGSVLFVSFGSGGTLSCEQLNELALGLEMSEQRFLWVVRSPNNAANSTFFSVNSHKDPYDFLPKGFLDR-----TKGRGM 344 (482)
Q Consensus 270 ~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~-----~~~~~v 344 (482)
+..+||++|--....+|+.++.-.+-|+..+..++|.+..+..- + ..|+.- ..++.|
T Consensus 757 ~d~vvf~~FNqLyKidP~~l~~W~~ILk~VPnS~LwllrfPa~g----------------e--~rf~ty~~~~Gl~p~ri 818 (966)
T KOG4626|consen 757 EDAVVFCNFNQLYKIDPSTLQMWANILKRVPNSVLWLLRFPAVG----------------E--QRFRTYAEQLGLEPDRI 818 (966)
T ss_pred CCeEEEeechhhhcCCHHHHHHHHHHHHhCCcceeEEEeccccc----------------h--HHHHHHHHHhCCCccce
Confidence 34599999999999999999999999999999999999865431 0 222211 134556
Q ss_pred eeccccchhhhhhc---cc--ccccccccCchhHHHHhhcCCcEeeccccccchhhHH-HHHhhcceeeeeccC
Q 045267 345 LVPSWAPQAQVLSH---GS--TGGFLCHCGWNSVLESVVNGVPLIAWPLYAEQKMNAV-ILTEDVKLALRPKAN 412 (482)
Q Consensus 345 ~~~~~ipq~~lL~~---~~--~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~-rv~~~~G~G~~l~~~ 412 (482)
++.+-++-.+=..+ ++ +.-+.+ .|..|.++.|..|||||.+|.-.--...|. .+.. .|+|..+.++
T Consensus 819 ifs~va~k~eHvrr~~LaDv~LDTplc-nGhTTg~dvLw~GvPmVTmpge~lAsrVa~Sll~~-~Gl~hliak~ 890 (966)
T KOG4626|consen 819 IFSPVAAKEEHVRRGQLADVCLDTPLC-NGHTTGMDVLWAGVPMVTMPGETLASRVAASLLTA-LGLGHLIAKN 890 (966)
T ss_pred eeccccchHHHHHhhhhhhhcccCcCc-CCcccchhhhccCCceeecccHHHHHHHHHHHHHH-cccHHHHhhh
Confidence 66555543221211 12 112333 478999999999999999997654444444 5666 8999865543
No 136
>PHA01630 putative group 1 glycosyl transferase
Probab=94.20 E-value=2.4 Score=41.75 Aligned_cols=109 Identities=7% Similarity=0.011 Sum_probs=64.6
Q ss_pred cccchhh---hhhcccccccc--cc-cC-chhHHHHhhcCCcEeeccccccchhhHHHHHhh------------------
Q 045267 348 SWAPQAQ---VLSHGSTGGFL--CH-CG-WNSVLESVVNGVPLIAWPLYAEQKMNAVILTED------------------ 402 (482)
Q Consensus 348 ~~ipq~~---lL~~~~~~~~I--~H-GG-~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~------------------ 402 (482)
.++|+.+ ++..++ ++| ++ .| -.++.||+++|+|+|+.-..+ +...+.++
T Consensus 196 ~~v~~~~l~~~y~~aD--v~v~pS~~E~fgl~~lEAMA~G~PVIas~~gg----~~E~i~~~~ng~lv~~~~~~~~~~~~ 269 (331)
T PHA01630 196 TPLPDDDIYSLFAGCD--ILFYPVRGGAFEIPVIEALALGLDVVVTEKGA----WSEWVLSNLDVYWIKSGRKPKLWYTN 269 (331)
T ss_pred ccCCHHHHHHHHHhCC--EEEECCccccCChHHHHHHHcCCCEEEeCCCC----chhhccCCCceEEeeecccccccccC
Confidence 3466544 678888 554 22 33 458999999999999976432 11122220
Q ss_pred -cceeeeeccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhh
Q 045267 403 -VKLALRPKANENGIVGRDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKWNN 472 (482)
Q Consensus 403 -~G~G~~l~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~ 472 (482)
.++|..++ .+.+++.+++.+++.|++.++.+++...-+.... +.-+..+.++++.+.+.+
T Consensus 270 ~~~~G~~v~------~~~~~~~~~ii~~l~~~~~~~~~~~~~~~~~~~~----~~fs~~~ia~k~~~l~~~ 330 (331)
T PHA01630 270 PIHVGYFLD------PDIEDAYQKLLEALANWTPEKKKENLEGRAILYR----ENYSYNAIAKMWEKILEK 330 (331)
T ss_pred CcccccccC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH----HhCCHHHHHHHHHHHHhc
Confidence 12343333 3567888888888887421245544444444433 467777777777776643
No 137
>PRK14098 glycogen synthase; Provisional
Probab=94.03 E-value=1.1 Score=46.80 Aligned_cols=116 Identities=9% Similarity=-0.002 Sum_probs=70.8
Q ss_pred CCCeeeccccchh---hhhhcccccccccc---cCc-hhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCC
Q 045267 341 GRGMLVPSWAPQA---QVLSHGSTGGFLCH---CGW-NSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANE 413 (482)
Q Consensus 341 ~~~v~~~~~ipq~---~lL~~~~~~~~I~H---GG~-gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 413 (482)
+.++.+.++.+.. .+++.+| +|+.- =|. .+.+||+++|+|.|+....+-........++ -+.|..++.
T Consensus 361 ~~~V~~~g~~~~~~~~~~~a~aD--i~l~PS~~E~~Gl~~lEAma~G~ppVv~~~GGl~d~v~~~~~~-~~~G~l~~~-- 435 (489)
T PRK14098 361 PEQVSVQTEFTDAFFHLAIAGLD--MLLMPGKIESCGMLQMFAMSYGTIPVAYAGGGIVETIEEVSED-KGSGFIFHD-- 435 (489)
T ss_pred CCCEEEEEecCHHHHHHHHHhCC--EEEeCCCCCCchHHHHHHHhCCCCeEEecCCCCceeeecCCCC-CCceeEeCC--
Confidence 4678888888764 5788899 66642 233 3678999999998887654321111111123 356766654
Q ss_pred CCccCHHHHHHHHHHHhc---CCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhc
Q 045267 414 NGIVGRDEIAKVVKALME---GEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKWNNN 473 (482)
Q Consensus 414 ~~~~~~~~l~~ai~~vl~---~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~~ 473 (482)
-++++++++|.+++. |+ + ..++++ +++..+.-+-++.++++.+..++.
T Consensus 436 ---~d~~~la~ai~~~l~~~~~~---~---~~~~~~---~~~~~~~fsw~~~a~~y~~lY~~~ 486 (489)
T PRK14098 436 ---YTPEALVAKLGEALALYHDE---E---RWEELV---LEAMERDFSWKNSAEEYAQLYREL 486 (489)
T ss_pred ---CCHHHHHHHHHHHHHHHcCH---H---HHHHHH---HHHhcCCCChHHHHHHHHHHHHHH
Confidence 478999999998763 32 1 122222 223335677777888887766543
No 138
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=93.87 E-value=3.7 Score=40.04 Aligned_cols=39 Identities=8% Similarity=0.223 Sum_probs=34.4
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhcC-CCEEEEEcCCCC
Q 045267 12 HIVLLPSPGMGHLIPLIEFAKRLVHRH-HFLVTFFIPSDG 50 (482)
Q Consensus 12 ~ili~~~~~~GH~~P~l~La~~L~~r~-GH~Vt~~~~~~~ 50 (482)
||+++-....|++.=+.++.++|++++ +.+|++++.+.+
T Consensus 1 ~ILiir~~~iGD~vl~~p~l~~Lr~~~P~a~I~~l~~~~~ 40 (319)
T TIGR02193 1 RILIVKTSSLGDVIHTLPALTDIKRALPDVEIDWVVEEGF 40 (319)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHhCCCCEEEEEEChhH
Confidence 488888899999999999999998876 799999998743
No 139
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1
Probab=93.56 E-value=0.74 Score=35.56 Aligned_cols=82 Identities=16% Similarity=0.191 Sum_probs=54.2
Q ss_pred ccCchhHHHHhhcCCcEeeccccccchhhHHHHHhhcc-eeeeeccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 045267 367 HCGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVK-LALRPKANENGIVGRDEIAKVVKALMEGEQGKEVRNKMKDL 445 (482)
Q Consensus 367 HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G-~G~~l~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l 445 (482)
+|-..-+.|++++|+|+|.-+. ......+.+ | -++..+ +.+++.+++..+++|++ ..++-+++-
T Consensus 9 ~~~~~r~~E~~a~G~~vi~~~~----~~~~~~~~~--~~~~~~~~-------~~~el~~~i~~ll~~~~--~~~~ia~~a 73 (92)
T PF13524_consen 9 DGPNMRIFEAMACGTPVISDDS----PGLREIFED--GEHIITYN-------DPEELAEKIEYLLENPE--ERRRIAKNA 73 (92)
T ss_pred CCCchHHHHHHHCCCeEEECCh----HHHHHHcCC--CCeEEEEC-------CHHHHHHHHHHHHCCHH--HHHHHHHHH
Confidence 4556689999999999998754 333443333 3 333332 78999999999999872 334444444
Q ss_pred HHHHHHHhhcCCchHHHHHHHH
Q 045267 446 KDAAAAVLSENGSSTKALSQLA 467 (482)
Q Consensus 446 ~~~~~~a~~~~g~~~~~~~~~~ 467 (482)
.+.++ +.-+....+++|+
T Consensus 74 ~~~v~----~~~t~~~~~~~il 91 (92)
T PF13524_consen 74 RERVL----KRHTWEHRAEQIL 91 (92)
T ss_pred HHHHH----HhCCHHHHHHHHH
Confidence 44444 4677777777765
No 140
>TIGR02400 trehalose_OtsA alpha,alpha-trehalose-phosphate synthase [UDP-forming]. This enzyme catalyzes the key, penultimate step in biosynthesis of trehalose, a compatible solute made as an osmoprotectant in some species in all three domains of life. The gene symbol OtsA stands for osmotically regulated trehalose synthesis A. Trehalose helps protect against both osmotic and thermal stresses, and is made from two glucose subunits. This model excludes glucosylglycerol-phosphate synthase, an enzyme of an analogous osmoprotectant system in many cyanobacterial strains. This model does not identify archaeal examples, as they are more divergent than glucosylglycerol-phosphate synthase. Sequences that score in the gray zone between the trusted and noise cutoffs include a number of yeast multidomain proteins in which the N-terminal domain may be functionally equivalent to this family. The gray zone also includes the OtsA of Cornyebacterium glutamicum (and related species), shown to be responsib
Probab=92.48 E-value=1.2 Score=45.85 Aligned_cols=105 Identities=16% Similarity=0.111 Sum_probs=71.1
Q ss_pred eccccchhh---hhhccccccccc---ccCch-hHHHHhhcCCc----EeeccccccchhhHHHHHhhcceeeeeccCCC
Q 045267 346 VPSWAPQAQ---VLSHGSTGGFLC---HCGWN-SVLESVVNGVP----LIAWPLYAEQKMNAVILTEDVKLALRPKANEN 414 (482)
Q Consensus 346 ~~~~ipq~~---lL~~~~~~~~I~---HGG~g-s~~eal~~GvP----~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~ 414 (482)
+.+.+|+.+ ++..+| +++. +=|+| +..||+++|+| +|+--+.+-- . . .+-|+.+++
T Consensus 340 l~~~~~~~el~aly~aaD--v~vv~S~~EG~~Lv~lEamA~g~P~~g~vVlS~~~G~~----~---~-l~~gllVnP--- 406 (456)
T TIGR02400 340 LNRSYDREELMALYRAAD--VGLVTPLRDGMNLVAKEYVAAQDPKDGVLILSEFAGAA----Q---E-LNGALLVNP--- 406 (456)
T ss_pred EcCCCCHHHHHHHHHhCc--EEEECccccccCccHHHHHHhcCCCCceEEEeCCCCCh----H---H-hCCcEEECC---
Confidence 344566655 467788 5553 44655 77899999999 6665444322 1 1 233556654
Q ss_pred CccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHh
Q 045267 415 GIVGRDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKWN 471 (482)
Q Consensus 415 ~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~ 471 (482)
.+.+.++++|.++|+++. ++-+++.+++.+.+.+ -+...-+++|++.|.
T Consensus 407 --~d~~~lA~aI~~aL~~~~-~er~~r~~~~~~~v~~-----~~~~~W~~~~l~~l~ 455 (456)
T TIGR02400 407 --YDIDGMADAIARALTMPL-EEREERHRAMMDKLRK-----NDVQRWREDFLSDLN 455 (456)
T ss_pred --CCHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhh
Confidence 578999999999998652 2566677777777653 677788888887764
No 141
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=92.46 E-value=11 Score=37.16 Aligned_cols=106 Identities=11% Similarity=0.005 Sum_probs=63.5
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhcC-CCEEEEEcCCCCCCchhhhhhhhcCCCcee-EEEecCCCCCCCcchhhHHHH
Q 045267 12 HIVLLPSPGMGHLIPLIEFAKRLVHRH-HFLVTFFIPSDGPPSEAQKSTLESLPSSIN-SVFLPVSLNDVAEDARAETVI 89 (482)
Q Consensus 12 ~ili~~~~~~GH~~P~l~La~~L~~r~-GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~ 89 (482)
||+|+-....|++.=+.++.++|++++ +.+|++++.+.+ ..+++..+. ++ +..++.... .... ..+
T Consensus 1 rILii~~~~iGD~vl~tp~l~~Lk~~~P~a~I~~l~~~~~------~~l~~~~p~-vd~vi~~~~~~~--~~~~---~~~ 68 (344)
T TIGR02201 1 RILLIKLRHHGDMLLTTPVISSLKKNYPDAKIDVLLYQET------IPILSENPD-INALYGLDRKKA--KAGE---RKL 68 (344)
T ss_pred CEEEEEeccccceeeHHHHHHHHHHHCCCCEEEEEECcCh------HHHHhcCCC-ccEEEEeChhhh--cchH---HHH
Confidence 488999999999999999999998875 689999998743 333333332 32 222221100 0000 001
Q ss_pred HHHHHhhhHHHHHHHHHHhhCCCccEEEeCCCCccHHHHHHHcCCccEE
Q 045267 90 SLTVLRSLPCLRQELTSLVAKATVAALVVDLFGTDAFDVAQEFNISPYI 138 (482)
Q Consensus 90 ~~~~~~~~~~l~~~l~~~~~~~~pD~vi~D~~~~~~~~~A~~lgIP~v~ 138 (482)
..+...+.. ++..++|++|.-....-...++...|.|..+
T Consensus 69 --------~~~~~l~~~-lr~~~yD~vidl~~~~~s~ll~~l~~a~~ri 108 (344)
T TIGR02201 69 --------ANQFHLIKV-LRANRYDLVVNLTDQWMVAILVKLLNARVKI 108 (344)
T ss_pred --------HHHHHHHHH-HHhCCCCEEEECCcchHHHHHHHhcCCCeEE
Confidence 011112222 2456999999655445566788888999554
No 142
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=92.04 E-value=0.44 Score=42.88 Aligned_cols=40 Identities=20% Similarity=0.188 Sum_probs=27.7
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCC
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPP 52 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 52 (482)
|+||+.-=-+. +---+..|+++|.+. ||+|+++.|..+..
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~L~~~-g~~V~VvAP~~~~S 40 (196)
T PF01975_consen 1 MRILLTNDDGI-DAPGIRALAKALSAL-GHDVVVVAPDSEQS 40 (196)
T ss_dssp SEEEEE-SS-T-TSHHHHHHHHHHTTT-SSEEEEEEESSSTT
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhc-CCeEEEEeCCCCCc
Confidence 56777654444 444588999999554 89999999886544
No 143
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=91.65 E-value=13 Score=35.46 Aligned_cols=38 Identities=16% Similarity=0.236 Sum_probs=33.5
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhcC-CCEEEEEcCCC
Q 045267 12 HIVLLPSPGMGHLIPLIEFAKRLVHRH-HFLVTFFIPSD 49 (482)
Q Consensus 12 ~ili~~~~~~GH~~P~l~La~~L~~r~-GH~Vt~~~~~~ 49 (482)
||+++-..+.|++.-+.++.++|+++. +-+|++++.+.
T Consensus 1 kILii~~~~iGD~i~~~p~l~~Lk~~~P~~~I~~l~~~~ 39 (279)
T cd03789 1 RILVIRLSWIGDVVLATPLLRALKARYPDARITVLAPPW 39 (279)
T ss_pred CEEEEecccHHHHHHHHHHHHHHHHHCCCCEEEEEEChh
Confidence 488999999999999999999998874 37999999884
No 144
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=89.69 E-value=4.1 Score=34.99 Aligned_cols=30 Identities=23% Similarity=0.182 Sum_probs=23.5
Q ss_pred CCCChHHHHHHHHHHHhcCCCEEEEEcCCCC
Q 045267 20 GMGHLIPLIEFAKRLVHRHHFLVTFFIPSDG 50 (482)
Q Consensus 20 ~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~ 50 (482)
..|--.-+..|+++|+++ ||+|+++++...
T Consensus 11 ~GG~e~~~~~l~~~l~~~-G~~v~v~~~~~~ 40 (177)
T PF13439_consen 11 IGGAERVVLNLARALAKR-GHEVTVVSPGVK 40 (177)
T ss_dssp SSHHHHHHHHHHHHHHHT-T-EEEEEESS-T
T ss_pred CChHHHHHHHHHHHHHHC-CCEEEEEEcCCC
Confidence 446667789999999988 999999987743
No 145
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor. It is a key enzyme in the trehalose synthesis pathway. Trehalose is a nonreducing disaccharide present in a wide variety of organisms and may serve as a source of energy and carbon. It is characterized most notably in insect, plant, and microbial cells. Its production is often associated with a variety of stress conditions, including desiccation, dehydration, heat, cold, and oxidation. This family represents the catalytic domain of the TPS. Some members of this domain family coexist with a C-terminal trehalose phosphatase domain.
Probab=87.28 E-value=1.1 Score=46.21 Aligned_cols=104 Identities=17% Similarity=0.129 Sum_probs=63.3
Q ss_pred eccccchhh---hhhcccccccc---cccCch-hHHHHhhcCCc----EeeccccccchhhHHHHHhhcceeeeeccCCC
Q 045267 346 VPSWAPQAQ---VLSHGSTGGFL---CHCGWN-SVLESVVNGVP----LIAWPLYAEQKMNAVILTEDVKLALRPKANEN 414 (482)
Q Consensus 346 ~~~~ipq~~---lL~~~~~~~~I---~HGG~g-s~~eal~~GvP----~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~ 414 (482)
+.+++++.+ ++..++ +|| .+-|+| ++.||+++|+| +|+--..+ .+. . ..-|..++.
T Consensus 345 ~~g~v~~~el~~~y~~aD--v~v~pS~~Eg~~lv~lEAma~g~p~~g~vV~S~~~G----~~~---~-~~~g~lv~p--- 411 (460)
T cd03788 345 LYRSLPREELAALYRAAD--VALVTPLRDGMNLVAKEYVACQDDDPGVLILSEFAG----AAE---E-LSGALLVNP--- 411 (460)
T ss_pred EeCCCCHHHHHHHHHhcc--EEEeCccccccCcccceeEEEecCCCceEEEecccc----chh---h-cCCCEEECC---
Confidence 446777655 577888 555 245655 67899999999 44432222 111 1 122455543
Q ss_pred CccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHH
Q 045267 415 GIVGRDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKW 470 (482)
Q Consensus 415 ~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~ 470 (482)
.+.++++++|.++++++. ++.+.+.++..+.+. .-+...-++.+++.|
T Consensus 412 --~d~~~la~ai~~~l~~~~-~e~~~~~~~~~~~v~-----~~~~~~w~~~~l~~l 459 (460)
T cd03788 412 --YDIDEVADAIHRALTMPL-EERRERHRKLREYVR-----THDVQAWANSFLDDL 459 (460)
T ss_pred --CCHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHH-----hCCHHHHHHHHHHhh
Confidence 478999999999998752 133334444444443 366777778877765
No 146
>COG0496 SurE Predicted acid phosphatase [General function prediction only]
Probab=86.92 E-value=4.4 Score=37.72 Aligned_cols=110 Identities=15% Similarity=0.146 Sum_probs=56.8
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCCchhhhhhhhcCCCceeEEEec---CCCCCCCcchhhHH
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPPSEAQKSTLESLPSSINSVFLP---VSLNDVAEDARAET 87 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~~~~ 87 (482)
|||++.- --.=|.--+.+|+++|. . +++|+++.|+.+..-.. .-. .+...++...+. +.+.+.|
T Consensus 1 mrILlTN-DDGi~a~Gi~aL~~al~-~-~~dV~VVAP~~~qSg~s--~sl-Tl~~Plr~~~~~~~~~av~GTP------- 67 (252)
T COG0496 1 MRILLTN-DDGIHAPGIRALARALR-E-GADVTVVAPDREQSGAS--HSL-TLHEPLRVRQVDNGAYAVNGTP------- 67 (252)
T ss_pred CeEEEec-CCccCCHHHHHHHHHHh-h-CCCEEEEccCCCCcccc--ccc-ccccCceeeEeccceEEecCCh-------
Confidence 3455443 22234444778888885 6 99999999986544110 000 011112222222 2222323
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhCCCccEEEeCC----------CCccHH---HHHHHcCCccEEEccc
Q 045267 88 VISLTVLRSLPCLRQELTSLVAKATVAALVVDL----------FGTDAF---DVAQEFNISPYIFYPS 142 (482)
Q Consensus 88 ~~~~~~~~~~~~l~~~l~~~~~~~~pD~vi~D~----------~~~~~~---~~A~~lgIP~v~~~~~ 142 (482)
.+.+.--+..++++.+||+||+.. .+.+.. .=|..+|||.+.++-.
T Consensus 68 ---------aDCV~lal~~l~~~~~pDLVvSGIN~G~Nlg~dv~ySGTVaaA~Ea~~~GipsIA~S~~ 126 (252)
T COG0496 68 ---------ADCVILGLNELLKEPRPDLVVSGINAGANLGDDVIYSGTVAAAMEAALLGIPAIAISLA 126 (252)
T ss_pred ---------HHHHHHHHHHhccCCCCCEEEeCccCCCccccceeeeehHHHHHHHHHcCccceeeeeh
Confidence 223333345555566799998642 222323 3344579998886654
No 147
>COG4370 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.73 E-value=2.9 Score=39.71 Aligned_cols=104 Identities=17% Similarity=0.151 Sum_probs=61.3
Q ss_pred cccchhhhhhcccccccccccCchhH-HHHhhcCCcEeeccccccchh--hHHHHHhhcceeeeeccCCCCccCHHHHHH
Q 045267 348 SWAPQAQVLSHGSTGGFLCHCGWNSV-LESVVNGVPLIAWPLYAEQKM--NAVILTEDVKLALRPKANENGIVGRDEIAK 424 (482)
Q Consensus 348 ~~ipq~~lL~~~~~~~~I~HGG~gs~-~eal~~GvP~v~~P~~~DQ~~--na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ 424 (482)
.|-...++|-+++ +.|-- +||. -+++-.|||+|.+|-.+-|+. .|.|-.+-+|+.+.+-..+ +..-..
T Consensus 301 sqqsfadiLH~ad--aalgm--AGTAtEQavGLGkPvi~fPg~GPQy~pgFA~rQ~rLLG~sltlv~~~-----aq~a~~ 371 (412)
T COG4370 301 SQQSFADILHAAD--AALGM--AGTATEQAVGLGKPVIGFPGQGPQYNPGFAERQQRLLGASLTLVRPE-----AQAAAQ 371 (412)
T ss_pred eHHHHHHHHHHHH--HHHHh--ccchHHHhhccCCceeecCCCCCCcChHHHHHHHHHhcceeeecCCc-----hhhHHH
Confidence 3333445555555 44422 3343 446788999999999999875 7777777678887765443 222233
Q ss_pred HHHHHhcCCchHHHHHHHH-HHHHHHHHHhhcCCchHHHHHHHH
Q 045267 425 VVKALMEGEQGKEVRNKMK-DLKDAAAAVLSENGSSTKALSQLA 467 (482)
Q Consensus 425 ai~~vl~~~~~~~~r~~a~-~l~~~~~~a~~~~g~~~~~~~~~~ 467 (482)
+.+++|.|+ ++-.+.+ .=.+++-+ -|...+..|++-
T Consensus 372 ~~q~ll~dp---~r~~air~nGqrRiGq----aGaa~rIAe~l~ 408 (412)
T COG4370 372 AVQELLGDP---QRLTAIRHNGQRRIGQ----AGAARRIAEELG 408 (412)
T ss_pred HHHHHhcCh---HHHHHHHhcchhhccC----cchHHHHHHHHH
Confidence 344599998 5555555 23344443 354444444443
No 148
>TIGR03713 acc_sec_asp1 accessory Sec system protein Asp1. This protein is designated Asp1 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=85.57 E-value=2 Score=44.95 Aligned_cols=92 Identities=11% Similarity=0.090 Sum_probs=61.6
Q ss_pred CCeeeccccch---hhhhhccccccccccc---CchhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCCCC
Q 045267 342 RGMLVPSWAPQ---AQVLSHGSTGGFLCHC---GWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENG 415 (482)
Q Consensus 342 ~~v~~~~~ipq---~~lL~~~~~~~~I~HG---G~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~ 415 (482)
..|.+.++... ..++.++. ++|.=+ |.++..||+.+|+|+| .......|++ ..-|.-+ .
T Consensus 409 ~~v~f~gy~~e~dl~~~~~~ar--l~id~s~~eg~~~~ieAiS~GiPqI-------nyg~~~~V~d-~~NG~li---~-- 473 (519)
T TIGR03713 409 ERIAFTTLTNEEDLISALDKLR--LIIDLSKEPDLYTQISGISAGIPQI-------NKVETDYVEH-NKNGYII---D-- 473 (519)
T ss_pred cEEEEEecCCHHHHHHHHhhhe--EEEECCCCCChHHHHHHHHcCCCee-------ecCCceeeEc-CCCcEEe---C--
Confidence 46777777773 44677777 787655 7779999999999999 3334444555 4455444 1
Q ss_pred ccCHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHHH
Q 045267 416 IVGRDEIAKVVKALMEGEQ-GKEVRNKMKDLKDAAA 450 (482)
Q Consensus 416 ~~~~~~l~~ai~~vl~~~~-~~~~r~~a~~l~~~~~ 450 (482)
+..+|.++|..+|.+.. -+.+...+-+.+++..
T Consensus 474 --d~~~l~~al~~~L~~~~~wn~~~~~sy~~~~~yS 507 (519)
T TIGR03713 474 --DISELLKALDYYLDNLKNWNYSLAYSIKLIDDYS 507 (519)
T ss_pred --CHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhh
Confidence 67999999999999863 2344444444444443
No 149
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=84.87 E-value=2 Score=36.28 Aligned_cols=42 Identities=14% Similarity=-0.021 Sum_probs=37.5
Q ss_pred ccCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCC
Q 045267 8 QAAPHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDG 50 (482)
Q Consensus 8 ~~~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~ 50 (482)
|++++|++.+.+..+|-.-..-++..|.++ |++|+++.....
T Consensus 1 ~~~~~vl~~~~~gD~H~lG~~iv~~~lr~~-G~eVi~LG~~vp 42 (137)
T PRK02261 1 MKKKTVVLGVIGADCHAVGNKILDRALTEA-GFEVINLGVMTS 42 (137)
T ss_pred CCCCEEEEEeCCCChhHHHHHHHHHHHHHC-CCEEEECCCCCC
Confidence 678899999999999999999999999776 999999987643
No 150
>PLN02939 transferase, transferring glycosyl groups
Probab=84.13 E-value=16 Score=40.87 Aligned_cols=115 Identities=10% Similarity=0.044 Sum_probs=67.9
Q ss_pred CCCeeeccccchh---hhhhcccccccccc---cC-chhHHHHhhcCCcEeeccccc--cchhh--HHHH-Hhhcceeee
Q 045267 341 GRGMLVPSWAPQA---QVLSHGSTGGFLCH---CG-WNSVLESVVNGVPLIAWPLYA--EQKMN--AVIL-TEDVKLALR 408 (482)
Q Consensus 341 ~~~v~~~~~ipq~---~lL~~~~~~~~I~H---GG-~gs~~eal~~GvP~v~~P~~~--DQ~~n--a~rv-~~~~G~G~~ 408 (482)
..+|.+..+.+.. .+++.+| +||.- =| -.+.+||+++|+|.|+....+ |--.. ...+ ++ -+-|..
T Consensus 836 ~drV~FlG~~de~lah~IYAaAD--IFLmPSr~EPfGLvqLEAMAyGtPPVVs~vGGL~DtV~d~d~e~i~~e-g~NGfL 912 (977)
T PLN02939 836 NNNIRLILKYDEALSHSIYAASD--MFIIPSMFEPCGLTQMIAMRYGSVPIVRKTGGLNDSVFDFDDETIPVE-LRNGFT 912 (977)
T ss_pred CCeEEEEeccCHHHHHHHHHhCC--EEEECCCccCCcHHHHHHHHCCCCEEEecCCCCcceeecCCccccccC-CCceEE
Confidence 3568777887754 4788999 77742 22 348899999999999876544 21111 1111 12 245655
Q ss_pred eccCCCCccCHHHHHHHHHHHhc----CCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhh
Q 045267 409 PKANENGIVGRDEIAKVVKALME----GEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKWNN 472 (482)
Q Consensus 409 l~~~~~~~~~~~~l~~ai~~vl~----~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~ 472 (482)
.+. .+++.+.++|.+++. |+ +.+++ ++.. ++.+.-+-...++++.+.+.+
T Consensus 913 f~~-----~D~eaLa~AL~rAL~~~~~dp---e~~~~---L~~~---am~~dFSWe~~A~qYeeLY~~ 966 (977)
T PLN02939 913 FLT-----PDEQGLNSALERAFNYYKRKP---EVWKQ---LVQK---DMNIDFSWDSSASQYEELYQR 966 (977)
T ss_pred ecC-----CCHHHHHHHHHHHHHHhccCH---HHHHH---HHHH---HHHhcCCHHHHHHHHHHHHHH
Confidence 543 378889999988774 33 22222 2221 222456666777776664443
No 151
>PF06258 Mito_fiss_Elm1: Mitochondrial fission ELM1; InterPro: IPR009367 This family consists of several hypothetical eukaryotic and prokaryotic proteins. The function of this family is unknown.
Probab=83.85 E-value=12 Score=36.43 Aligned_cols=59 Identities=17% Similarity=0.082 Sum_probs=44.7
Q ss_pred chhhhhhcccccccccccCchhHHHHhhcCCcEeeccccccchh----hHHHHHhhcceeeeeccC
Q 045267 351 PQAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAWPLYAEQKM----NAVILTEDVKLALRPKAN 412 (482)
Q Consensus 351 pq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~----na~rv~~~~G~G~~l~~~ 412 (482)
|+..+|+.++. ++||--=.+.+.||+..|+|+.++|... +.. ....+++ .|+-..+...
T Consensus 221 Py~~~La~ad~-i~VT~DSvSMvsEA~~tG~pV~v~~l~~-~~~r~~r~~~~L~~-~g~~r~~~~~ 283 (311)
T PF06258_consen 221 PYLGFLAAADA-IVVTEDSVSMVSEAAATGKPVYVLPLPG-RSGRFRRFHQSLEE-RGAVRPFTGW 283 (311)
T ss_pred cHHHHHHhCCE-EEEcCccHHHHHHHHHcCCCEEEecCCC-cchHHHHHHHHHHH-CCCEEECCCc
Confidence 56778888884 7788888999999999999999999876 322 3445666 6777666543
No 152
>PRK02797 4-alpha-L-fucosyltransferase; Provisional
Probab=82.81 E-value=32 Score=33.20 Aligned_cols=80 Identities=16% Similarity=0.237 Sum_probs=58.1
Q ss_pred CCe-eeccccc---hhhhhhcccccccccc--cCchhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCCCC
Q 045267 342 RGM-LVPSWAP---QAQVLSHGSTGGFLCH--CGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENG 415 (482)
Q Consensus 342 ~~v-~~~~~ip---q~~lL~~~~~~~~I~H--GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~ 415 (482)
.++ .+.+++| +..+|+.||++.|+|+ =|.||++-.+.+|+|.++- .+=++|.. +.+ .|+-+-.+.+.
T Consensus 206 ~~~~~L~e~l~f~eYl~lL~~~Dl~~f~~~RQQgiGnl~lLi~~G~~v~l~---r~n~fwqd-l~e-~gv~Vlf~~d~-- 278 (322)
T PRK02797 206 ENFQILTEKLPFDDYLALLRQCDLGYFIFARQQGIGTLCLLIQLGKPVVLS---RDNPFWQD-LTE-QGLPVLFTGDD-- 278 (322)
T ss_pred ccEEehhhhCCHHHHHHHHHhCCEEEEeechhhHHhHHHHHHHCCCcEEEe---cCCchHHH-HHh-CCCeEEecCCc--
Confidence 455 4567777 5669999999888876 5899999999999999985 24445555 444 47777666666
Q ss_pred ccCHHHHHHHHHHH
Q 045267 416 IVGRDEIAKVVKAL 429 (482)
Q Consensus 416 ~~~~~~l~~ai~~v 429 (482)
++...++++=+++
T Consensus 279 -L~~~~v~e~~rql 291 (322)
T PRK02797 279 -LDEDIVREAQRQL 291 (322)
T ss_pred -ccHHHHHHHHHHH
Confidence 8777777664443
No 153
>PF07429 Glyco_transf_56: 4-alpha-L-fucosyltransferase glycosyl transferase group 56; InterPro: IPR009993 This family contains the bacterial enzyme 4-alpha-L-fucosyltransferase (Fuc4NAc transferase) (approximately 360 residues long). This catalyses the synthesis of Fuc4NAc-ManNAcA-GlcNAc-PP-Und (lipid III) as part of the biosynthetic pathway of enterobacterial common antigen (ECA), a polysaccharide comprised of the trisaccharide repeat unit Fuc4NAc-ManNAcA-GlcNAc [].; GO: 0008417 fucosyltransferase activity, 0009246 enterobacterial common antigen biosynthetic process, 0009276 Gram-negative-bacterium-type cell wall
Probab=81.71 E-value=34 Score=33.52 Aligned_cols=82 Identities=13% Similarity=0.110 Sum_probs=63.4
Q ss_pred CCee-eccccc---hhhhhhcccccccccc--cCchhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCCCC
Q 045267 342 RGML-VPSWAP---QAQVLSHGSTGGFLCH--CGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENG 415 (482)
Q Consensus 342 ~~v~-~~~~ip---q~~lL~~~~~~~~I~H--GG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~ 415 (482)
.++. +.+++| +..+|..|+++.|.|. =|.|+++-.|..|+|+++- .+...-.-+.+ .|+=+--..++
T Consensus 245 ~~~~iL~e~mpf~eYl~lL~~cDl~if~~~RQQgiGnI~lLl~~G~~v~L~----~~np~~~~l~~-~~ipVlf~~d~-- 317 (360)
T PF07429_consen 245 ENFQILTEFMPFDEYLALLSRCDLGIFNHNRQQGIGNICLLLQLGKKVFLS----RDNPFWQDLKE-QGIPVLFYGDE-- 317 (360)
T ss_pred cceeEhhhhCCHHHHHHHHHhCCEEEEeechhhhHhHHHHHHHcCCeEEEe----cCChHHHHHHh-CCCeEEecccc--
Confidence 4664 467888 5668999998877774 6899999999999999875 34444455666 68777767677
Q ss_pred ccCHHHHHHHHHHHhc
Q 045267 416 IVGRDEIAKVVKALME 431 (482)
Q Consensus 416 ~~~~~~l~~ai~~vl~ 431 (482)
++...|+++=+++..
T Consensus 318 -L~~~~v~ea~rql~~ 332 (360)
T PF07429_consen 318 -LDEALVREAQRQLAN 332 (360)
T ss_pred -CCHHHHHHHHHHHhh
Confidence 999999999888765
No 154
>PRK13932 stationary phase survival protein SurE; Provisional
Probab=81.60 E-value=18 Score=34.03 Aligned_cols=40 Identities=20% Similarity=0.265 Sum_probs=27.0
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCC
Q 045267 10 APHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPP 52 (482)
Q Consensus 10 ~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 52 (482)
+||||+.-=-+. |.--+.+|+++|.+. | +|+++.|.....
T Consensus 5 ~M~ILltNDDGi-~a~Gi~aL~~~l~~~-g-~V~VvAP~~~~S 44 (257)
T PRK13932 5 KPHILVCNDDGI-EGEGIHVLAASMKKI-G-RVTVVAPAEPHS 44 (257)
T ss_pred CCEEEEECCCCC-CCHHHHHHHHHHHhC-C-CEEEEcCCCCCC
Confidence 578887653222 234578899999765 7 799998876444
No 155
>COG0438 RfaG Glycosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=79.38 E-value=57 Score=30.77 Aligned_cols=81 Identities=20% Similarity=0.307 Sum_probs=53.8
Q ss_pred CCCeeeccccc---hhhhhhcccccccccc---cCchh-HHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCC
Q 045267 341 GRGMLVPSWAP---QAQVLSHGSTGGFLCH---CGWNS-VLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANE 413 (482)
Q Consensus 341 ~~~v~~~~~ip---q~~lL~~~~~~~~I~H---GG~gs-~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 413 (482)
..++...+++| ...++..++ +++.- .|.|. +.||+++|+|+|.- +.......+.+ .+.|. +...
T Consensus 256 ~~~v~~~g~~~~~~~~~~~~~~~--~~v~ps~~e~~~~~~~Ea~a~g~pvi~~----~~~~~~e~~~~-~~~g~-~~~~- 326 (381)
T COG0438 256 EDNVKFLGYVPDEELAELLASAD--VFVLPSLSEGFGLVLLEAMAAGTPVIAS----DVGGIPEVVED-GETGL-LVPP- 326 (381)
T ss_pred CCcEEEecccCHHHHHHHHHhCC--EEEeccccccchHHHHHHHhcCCcEEEC----CCCChHHHhcC-CCceE-ecCC-
Confidence 36777788888 334666677 55554 35544 59999999999665 44444444444 33466 3322
Q ss_pred CCccCHHHHHHHHHHHhcCC
Q 045267 414 NGIVGRDEIAKVVKALMEGE 433 (482)
Q Consensus 414 ~~~~~~~~l~~ai~~vl~~~ 433 (482)
.+.+.+.+++..++.+.
T Consensus 327 ---~~~~~~~~~i~~~~~~~ 343 (381)
T COG0438 327 ---GDVEELADALEQLLEDP 343 (381)
T ss_pred ---CCHHHHHHHHHHHhcCH
Confidence 25799999999999874
No 156
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=78.51 E-value=6.6 Score=37.47 Aligned_cols=41 Identities=20% Similarity=0.270 Sum_probs=35.8
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCC
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPP 52 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 52 (482)
.+|.|...|+.|-=.=.=.|.+.|.++ ||+|.++.-++-.+
T Consensus 52 ~viGITG~PGaGKSTli~~L~~~l~~~-G~rVaVlAVDPSSp 92 (323)
T COG1703 52 HVIGITGVPGAGKSTLIEALGRELRER-GHRVAVLAVDPSSP 92 (323)
T ss_pred cEEEecCCCCCchHHHHHHHHHHHHHC-CcEEEEEEECCCCC
Confidence 479999999999999999999999888 99999998665433
No 157
>TIGR02398 gluc_glyc_Psyn glucosylglycerol-phosphate synthase. Glucosylglycerol-phosphate synthase catalyzes the key step in the biosynthesis of the osmolyte glucosylglycerol. It is known in several cyanobacteria and in Pseudomonas anguilliseptica. The enzyme is closely related to the alpha,alpha-trehalose-phosphate synthase, likewise involved in osmolyte biosynthesis, of E. coli and many other bacteria. A close homolog from Xanthomonas campestris is excluded from this model and scores between trusted and noise.
Probab=77.63 E-value=32 Score=35.76 Aligned_cols=110 Identities=15% Similarity=0.127 Sum_probs=73.6
Q ss_pred eeeccccchhh---hhhccccccccc--ccCchhHH-HHhhcCC----cEeeccccccchhhHHHHHhhcceeeeeccCC
Q 045267 344 MLVPSWAPQAQ---VLSHGSTGGFLC--HCGWNSVL-ESVVNGV----PLIAWPLYAEQKMNAVILTEDVKLALRPKANE 413 (482)
Q Consensus 344 v~~~~~ipq~~---lL~~~~~~~~I~--HGG~gs~~-eal~~Gv----P~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~ 413 (482)
+.+.+.+|+.+ ++..++| ++|| .-|+|-+. |.++++. |+|+=-+.+ |. ++ +.-|+.+++
T Consensus 364 ~~~~~~v~~~el~alYr~ADV-~lvT~lrDGmNLVa~Eyva~~~~~~GvLILSefaG-----aa--~~-l~~AllVNP-- 432 (487)
T TIGR02398 364 QFFTRSLPYEEVSAWFAMADV-MWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAG-----AA--VE-LKGALLTNP-- 432 (487)
T ss_pred EEEcCCCCHHHHHHHHHhCCE-EEECccccccCcchhhHHhhhcCCCCCEEEecccc-----ch--hh-cCCCEEECC--
Confidence 45678888766 4556774 4444 56999554 9999987 544433321 11 44 444677765
Q ss_pred CCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhc
Q 045267 414 NGIVGRDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKWNNN 473 (482)
Q Consensus 414 ~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~~ 473 (482)
.+.++++++|.++|+.+. ++=++|.+++.+.++. -....=++.|++.|...
T Consensus 433 ---~d~~~~A~ai~~AL~m~~-~Er~~R~~~l~~~v~~-----~d~~~W~~~fl~~l~~~ 483 (487)
T TIGR02398 433 ---YDPVRMDETIYVALAMPK-AEQQARMREMFDAVNY-----YDVQRWADEFLAAVSPQ 483 (487)
T ss_pred ---CCHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHhh-----CCHHHHHHHHHHHhhhc
Confidence 689999999999999863 2456677777777764 45667788888777653
No 158
>PF04464 Glyphos_transf: CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ; InterPro: IPR007554 Wall-associated teichoic acids are a heterogeneous class of phosphate-rich polymers that are covalently linked to the cell wall peptidoglycan of Gram-positive bacteria. They consist of a main chain of phosphodiester-linked polyols and/or sugar moieties attached to peptidoglycan via a linkage unit. CDP-glycerol:poly(glycerophosphate) glycerophosphotransferase is responsible for the polymerisation of the main chain of the teichoic acid by sequential transfer of glycerol-phosphate units from CDP-glycerol to the linkage unit lipid [].; GO: 0047355 CDP-glycerol glycerophosphotransferase activity, 0016020 membrane; PDB: 3L7K_B 3L7L_D 3L7I_A 3L7J_D 3L7M_D.
Probab=77.56 E-value=5.1 Score=39.95 Aligned_cols=114 Identities=11% Similarity=0.207 Sum_probs=67.9
Q ss_pred CCeee-ccccchhhhhhcccccccccccCchhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCCCC--ccC
Q 045267 342 RGMLV-PSWAPQAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENG--IVG 418 (482)
Q Consensus 342 ~~v~~-~~~ipq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~--~~~ 418 (482)
.++.. .+..+..++|..++ ++||-- .+.+.|.++.++|+|....-.|.+.. + .|.-........| .-+
T Consensus 252 ~~i~~~~~~~~~~~ll~~aD--iLITDy-SSi~fD~~~l~KPiify~~D~~~Y~~-----~-rg~~~~~~~~~pg~~~~~ 322 (369)
T PF04464_consen 252 SNIIFVSDNEDIYDLLAAAD--ILITDY-SSIIFDFLLLNKPIIFYQPDLEEYEK-----E-RGFYFDYEEDLPGPIVYN 322 (369)
T ss_dssp TTEEE-TT-S-HHHHHHT-S--EEEESS--THHHHHGGGT--EEEE-TTTTTTTT-----T-SSBSS-TTTSSSS-EESS
T ss_pred CcEEECCCCCCHHHHHHhcC--EEEEec-hhHHHHHHHhCCCEEEEeccHHHHhh-----c-cCCCCchHhhCCCceeCC
Confidence 45554 34456789999999 999988 45889999999999988765555522 1 2332222111111 146
Q ss_pred HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHH
Q 045267 419 RDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLA 467 (482)
Q Consensus 419 ~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~ 467 (482)
.++|.++|.+++.++ ..++++-++..+++-. ...|.++++.++.++
T Consensus 323 ~~eL~~~i~~~~~~~--~~~~~~~~~~~~~~~~-~~Dg~s~eri~~~I~ 368 (369)
T PF04464_consen 323 FEELIEAIENIIENP--DEYKEKREKFRDKFFK-YNDGNSSERIVNYIF 368 (369)
T ss_dssp HHHHHHHHTTHHHHH--HHTHHHHHHHHHHHST-T--S-HHHHHHHHHH
T ss_pred HHHHHHHHHhhhhCC--HHHHHHHHHHHHHhCC-CCCchHHHHHHHHHh
Confidence 799999999988765 2455666666766643 335777777777665
No 159
>PRK13933 stationary phase survival protein SurE; Provisional
Probab=77.35 E-value=31 Score=32.41 Aligned_cols=39 Identities=18% Similarity=0.235 Sum_probs=24.9
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCC
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPP 52 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 52 (482)
||||+.-=-+. |.--+.+|+++| +. +|+|+++.|..+..
T Consensus 1 M~ILvtNDDGi-~apGl~aL~~~l-~~-~~~V~VvAP~~~~S 39 (253)
T PRK13933 1 MNILLTNDDGI-NAEGINTLAELL-SK-YHEVIIVAPENQRS 39 (253)
T ss_pred CeEEEEcCCCC-CChhHHHHHHHH-Hh-CCcEEEEccCCCCc
Confidence 35666542222 222388899999 45 78999999876544
No 160
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=76.66 E-value=23 Score=36.52 Aligned_cols=38 Identities=18% Similarity=0.267 Sum_probs=30.5
Q ss_pred CCEEEEEcCCC-CCChHHHHHHHHHHHhcCCCEEEEEcCC
Q 045267 10 APHIVLLPSPG-MGHLIPLIEFAKRLVHRHHFLVTFFIPS 48 (482)
Q Consensus 10 ~~~ili~~~~~-~GH~~P~l~La~~L~~r~GH~Vt~~~~~ 48 (482)
+++|+|....+ .|-..-...|++.|+++ |++|..+=+.
T Consensus 3 m~~i~I~gt~s~~GKT~it~~L~~~L~~~-G~~V~~fK~G 41 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRRR-GLRVQPFKVG 41 (451)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHhC-CCCcceeecC
Confidence 44577776555 49999999999999988 9999999654
No 161
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis. GSY2, the member of this family in S. cerevisiae, has been shown to possess glycogen synthase activity.
Probab=75.99 E-value=11 Score=39.76 Aligned_cols=80 Identities=10% Similarity=0.028 Sum_probs=48.3
Q ss_pred chhhhhhccccccccc---ccCch-hHHHHhhcCCcEeeccccc-cchhhHHHHHhhcceeeeeccCCCC--ccCHHHHH
Q 045267 351 PQAQVLSHGSTGGFLC---HCGWN-SVLESVVNGVPLIAWPLYA-EQKMNAVILTEDVKLALRPKANENG--IVGRDEIA 423 (482)
Q Consensus 351 pq~~lL~~~~~~~~I~---HGG~g-s~~eal~~GvP~v~~P~~~-DQ~~na~rv~~~~G~G~~l~~~~~~--~~~~~~l~ 423 (482)
+..+++..|+ ++|. +=|+| ++.||+++|+|+|.-...+ ..... ..+..+...|+.+...++. .-+.++|+
T Consensus 467 ~y~E~~~g~d--l~v~PS~yE~fG~~~lEAma~G~PvI~t~~~gf~~~v~-E~v~~~~~~gi~V~~r~~~~~~e~v~~La 543 (590)
T cd03793 467 DYEEFVRGCH--LGVFPSYYEPWGYTPAECTVMGIPSITTNLSGFGCFME-EHIEDPESYGIYIVDRRFKSPDESVQQLT 543 (590)
T ss_pred chHHHhhhce--EEEeccccCCCCcHHHHHHHcCCCEEEccCcchhhhhH-HHhccCCCceEEEecCCccchHHHHHHHH
Confidence 3566788888 5554 45544 8999999999999986533 11111 1222201257776532210 13568888
Q ss_pred HHHHHHhcCC
Q 045267 424 KVVKALMEGE 433 (482)
Q Consensus 424 ~ai~~vl~~~ 433 (482)
+++.+++..+
T Consensus 544 ~~m~~~~~~~ 553 (590)
T cd03793 544 QYMYEFCQLS 553 (590)
T ss_pred HHHHHHhCCc
Confidence 8888888543
No 162
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=73.99 E-value=5.1 Score=32.81 Aligned_cols=37 Identities=14% Similarity=0.110 Sum_probs=25.0
Q ss_pred CEEEEEcCCCCC---ChHHHHHHHHHHHhcCCCEEEEEcCC
Q 045267 11 PHIVLLPSPGMG---HLIPLIEFAKRLVHRHHFLVTFFIPS 48 (482)
Q Consensus 11 ~~ili~~~~~~G---H~~P~l~La~~L~~r~GH~Vt~~~~~ 48 (482)
|||+|+.-|-.+ .-.-.++|+.+-++| ||+|.++++.
T Consensus 1 Mki~fvmDpi~~i~~~kDTT~alm~eAq~R-Ghev~~~~~~ 40 (119)
T PF02951_consen 1 MKIAFVMDPIESIKPYKDTTFALMLEAQRR-GHEVFYYEPG 40 (119)
T ss_dssp -EEEEEES-GGG--TTT-HHHHHHHHHHHT-T-EEEEE-GG
T ss_pred CeEEEEeCCHHHCCCCCChHHHHHHHHHHC-CCEEEEEEcC
Confidence 467777766544 345688899999888 9999999866
No 163
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=73.97 E-value=35 Score=33.33 Aligned_cols=41 Identities=17% Similarity=0.170 Sum_probs=32.5
Q ss_pred CEEEEEcC-CCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCC
Q 045267 11 PHIVLLPS-PGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPP 52 (482)
Q Consensus 11 ~~ili~~~-~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 52 (482)
+||++++. |+-|-..-..++|-.|++. |.+|.+++.++.+.
T Consensus 2 ~riv~f~GKGGVGKTT~aaA~A~~lA~~-g~kvLlvStDPAhs 43 (322)
T COG0003 2 TRIVFFTGKGGVGKTTIAAATAVKLAES-GKKVLLVSTDPAHS 43 (322)
T ss_pred cEEEEEecCCcccHHHHHHHHHHHHHHc-CCcEEEEEeCCCCc
Confidence 35677666 6669999999999999888 99988887765444
No 164
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=73.79 E-value=31 Score=30.49 Aligned_cols=34 Identities=21% Similarity=0.150 Sum_probs=23.2
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHhcCCCE--EEEEcCC
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRLVHRHHFL--VTFFIPS 48 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L~~r~GH~--Vt~~~~~ 48 (482)
|||+|+.+++. .-+..+.++|.++ +|+ +..+.+.
T Consensus 1 mrI~~~~Sg~~---~~~~~~l~~l~~~-~~~~~iv~Vit~ 36 (181)
T PF00551_consen 1 MRIVFFGSGSG---SFLKALLEALKAR-GHNVEIVLVITN 36 (181)
T ss_dssp EEEEEEESSSS---HHHHHHHHHHHTT-SSEEEEEEEEES
T ss_pred CEEEEEEcCCC---HHHHHHHHHHHhC-CCCceEEEEecc
Confidence 57899876665 4566677788777 887 4444433
No 165
>PRK13934 stationary phase survival protein SurE; Provisional
Probab=73.69 E-value=49 Score=31.27 Aligned_cols=39 Identities=15% Similarity=0.088 Sum_probs=25.3
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCC
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPP 52 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 52 (482)
||||+.-=-+. |.--+.+|+++|... | +|+++.|.....
T Consensus 1 M~ILlTNDDGi-~apGi~aL~~al~~~-g-~V~VvAP~~eqS 39 (266)
T PRK13934 1 MKILVTNDDGV-HSPGLRLLYEFVSPL-G-EVDVVAPETPKS 39 (266)
T ss_pred CeEEEEcCCCC-CCHHHHHHHHHHHhC-C-cEEEEccCCCCc
Confidence 34555442222 445588999999765 7 799998875443
No 166
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=73.67 E-value=2.7 Score=36.82 Aligned_cols=40 Identities=10% Similarity=0.041 Sum_probs=24.7
Q ss_pred HHHHHHhhCCCccEEEeCCCCccHH-H--HHHH--c-CCccEEEcc
Q 045267 102 QELTSLVAKATVAALVVDLFGTDAF-D--VAQE--F-NISPYIFYP 141 (482)
Q Consensus 102 ~~l~~~~~~~~pD~vi~D~~~~~~~-~--~A~~--l-gIP~v~~~~ 141 (482)
+.+.+++++.+||+||+........ . +.++ + ++|.+.+.+
T Consensus 79 ~~l~~~l~~~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvT 124 (169)
T PF06925_consen 79 RRLIRLLREFQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVT 124 (169)
T ss_pred HHHHHHHhhcCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEc
Confidence 3455666678999999998765444 2 1122 3 577665544
No 167
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=72.96 E-value=13 Score=33.98 Aligned_cols=36 Identities=17% Similarity=0.156 Sum_probs=29.5
Q ss_pred EEEEcCC--CCCChHHHHHHHHHHHhcCCCEEEEEcCCC
Q 045267 13 IVLLPSP--GMGHLIPLIEFAKRLVHRHHFLVTFFIPSD 49 (482)
Q Consensus 13 ili~~~~--~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~ 49 (482)
|+++++| +-|-..-...|+.+|+++ |+.|.++-...
T Consensus 4 iIVvTSGKGGVGKTTttAnig~aLA~~-GkKv~liD~Di 41 (272)
T COG2894 4 IIVVTSGKGGVGKTTTTANIGTALAQL-GKKVVLIDFDI 41 (272)
T ss_pred EEEEecCCCCcCccchhHHHHHHHHHc-CCeEEEEecCc
Confidence 5566654 559999999999999998 99999996553
No 168
>PRK13931 stationary phase survival protein SurE; Provisional
Probab=72.89 E-value=32 Score=32.44 Aligned_cols=27 Identities=11% Similarity=-0.144 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhcC--CCEEEEEcCCCCCC
Q 045267 26 PLIEFAKRLVHRH--HFLVTFFIPSDGPP 52 (482)
Q Consensus 26 P~l~La~~L~~r~--GH~Vt~~~~~~~~~ 52 (482)
-+.+|+++|.+.. |++|+++.|.....
T Consensus 15 Gl~aL~~~l~~~~~~~~~V~VVAP~~eqS 43 (261)
T PRK13931 15 GLEVLEQIATELAGPDGEVWTVAPAFEQS 43 (261)
T ss_pred hHHHHHHHHHHhccCCCeEEEEeCCCCCC
Confidence 3566777774421 38999999886544
No 169
>PRK05595 replicative DNA helicase; Provisional
Probab=72.87 E-value=4 Score=41.96 Aligned_cols=38 Identities=21% Similarity=0.227 Sum_probs=31.5
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCC
Q 045267 12 HIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSD 49 (482)
Q Consensus 12 ~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~ 49 (482)
-|++...|+.|-..=.+.+|..++.++|+.|.|++-+.
T Consensus 203 liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEm 240 (444)
T PRK05595 203 MILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEM 240 (444)
T ss_pred EEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCC
Confidence 36777888999999999999877544499999998775
No 170
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=72.16 E-value=14 Score=32.08 Aligned_cols=109 Identities=16% Similarity=0.135 Sum_probs=56.6
Q ss_pred EEEcCCCCCChHH----HHHHHHHHHhcCCCEEEEEcCCCCCCc-hhhhhhhhcCCCce-eEEEec-CCCCCCCcchhhH
Q 045267 14 VLLPSPGMGHLIP----LIEFAKRLVHRHHFLVTFFIPSDGPPS-EAQKSTLESLPSSI-NSVFLP-VSLNDVAEDARAE 86 (482)
Q Consensus 14 li~~~~~~GH~~P----~l~La~~L~~r~GH~Vt~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~l~-~~~~~~~~~~~~~ 86 (482)
+++.--..|.++| ++..|++|.+..|.+|+.++-....+. ...+.....+ |+ +.+.++ ......
T Consensus 3 lv~~e~~~~~l~~~~~e~l~~A~~La~~~g~~v~av~~G~~~~~~~~l~~~l~~~--G~d~v~~~~~~~~~~~------- 73 (164)
T PF01012_consen 3 LVFAEHRDGRLNPVSLEALEAARRLAEALGGEVTAVVLGPAEEAAEALRKALAKY--GADKVYHIDDPALAEY------- 73 (164)
T ss_dssp EEEE-EETCEE-HHHHHHHHHHHHHHHCTTSEEEEEEEETCCCHHHHHHHHHHST--TESEEEEEE-GGGTTC-------
T ss_pred EEEEECCCCccCHHHHHHHHHHHHHHhhcCCeEEEEEEecchhhHHHHhhhhhhc--CCcEEEEecCcccccc-------
Confidence 3333333455555 789999999988899999886632221 1111112211 33 233333 211111
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhhCCCccEEEeCCCCcc---HHHHHHHcCCccEEEc
Q 045267 87 TVISLTVLRSLPCLRQELTSLVAKATVAALVVDLFGTD---AFDVAQEFNISPYIFY 140 (482)
Q Consensus 87 ~~~~~~~~~~~~~l~~~l~~~~~~~~pD~vi~D~~~~~---~~~~A~~lgIP~v~~~ 140 (482)
..+.+.+.+.+++++.+||+|+....... +..+|.++|.|++.-.
T Consensus 74 ---------~~~~~a~~l~~~~~~~~~~lVl~~~t~~g~~la~~lA~~L~~~~v~~v 121 (164)
T PF01012_consen 74 ---------DPEAYADALAELIKEEGPDLVLFGSTSFGRDLAPRLAARLGAPLVTDV 121 (164)
T ss_dssp ----------HHHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHHHHT-EEEEEE
T ss_pred ---------CHHHHHHHHHHHHHhcCCCEEEEcCcCCCCcHHHHHHHHhCCCccceE
Confidence 01222333344444459999998775543 3479999999987643
No 171
>KOG2941 consensus Beta-1,4-mannosyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=72.14 E-value=1e+02 Score=30.25 Aligned_cols=124 Identities=11% Similarity=0.008 Sum_probs=73.2
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCCchhhhhhhhcCCCceeEEEec-CCC-CCCCcchhhHH
Q 045267 10 APHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPPSEAQKSTLESLPSSINSVFLP-VSL-NDVAEDARAET 87 (482)
Q Consensus 10 ~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~-~~~~~~~~~~~ 87 (482)
++|++++..|--||--.|--=|..|++. |.+|.+++--.-.+ ...+.. ..+++++.++ ... ...|.-. .
T Consensus 12 k~ra~vvVLGDvGRSPRMqYHA~Sla~~-gf~VdliGy~~s~p---~e~l~~--hprI~ih~m~~l~~~~~~p~~~---~ 82 (444)
T KOG2941|consen 12 KKRAIVVVLGDVGRSPRMQYHALSLAKL-GFQVDLIGYVESIP---LEELLN--HPRIRIHGMPNLPFLQGGPRVL---F 82 (444)
T ss_pred cceEEEEEecccCCChHHHHHHHHHHHc-CCeEEEEEecCCCC---hHHHhc--CCceEEEeCCCCcccCCCchhh---h
Confidence 5689999999999999999999999887 99999997432222 222333 5579998888 432 2222111 1
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhCCCccEEEeCC-CCccHHHHHH----HcCCccEEEccchHHH
Q 045267 88 VISLTVLRSLPCLRQELTSLVAKATVAALVVDL-FGTDAFDVAQ----EFNISPYIFYPSTAMC 146 (482)
Q Consensus 88 ~~~~~~~~~~~~l~~~l~~~~~~~~pD~vi~D~-~~~~~~~~A~----~lgIP~v~~~~~~~~~ 146 (482)
.....+. .+-.++-.+....++|.+++-. -+.....+|. ..|...++=|....++
T Consensus 83 l~lKvf~----Qfl~Ll~aL~~~~~~~~ilvQNPP~iPtliv~~~~~~l~~~KfiIDWHNy~Ys 142 (444)
T KOG2941|consen 83 LPLKVFW----QFLSLLWALFVLRPPDIILVQNPPSIPTLIVCVLYSILTGAKFIIDWHNYGYS 142 (444)
T ss_pred hHHHHHH----HHHHHHHHHHhccCCcEEEEeCCCCCchHHHHHHHHHHhcceEEEEehhhHHH
Confidence 1111111 1112222222345889988664 3333444433 3477777777765443
No 172
>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional
Probab=72.10 E-value=12 Score=41.55 Aligned_cols=99 Identities=14% Similarity=0.104 Sum_probs=65.1
Q ss_pred hhhhccccccccc---ccCch-hHHHHhhcCCc---Eeecc-ccccchhhHHHHHhhcc-eeeeeccCCCCccCHHHHHH
Q 045267 354 QVLSHGSTGGFLC---HCGWN-SVLESVVNGVP---LIAWP-LYAEQKMNAVILTEDVK-LALRPKANENGIVGRDEIAK 424 (482)
Q Consensus 354 ~lL~~~~~~~~I~---HGG~g-s~~eal~~GvP---~v~~P-~~~DQ~~na~rv~~~~G-~G~~l~~~~~~~~~~~~l~~ 424 (482)
+++..++ +||. .-|+| +..|++++|+| +++++ +.+ .+. . +| -|+.+++ .+.+.+++
T Consensus 371 aly~~AD--vfvvtSlrEGmnLv~lEamA~g~p~~gvlVlSe~~G----~~~---~-l~~~allVnP-----~D~~~lA~ 435 (797)
T PLN03063 371 ALYAITD--VMLVTSLRDGMNLVSYEFVACQKAKKGVLVLSEFAG----AGQ---S-LGAGALLVNP-----WNITEVSS 435 (797)
T ss_pred HHHHhCC--EEEeCccccccCcchhhHheeecCCCCCEEeeCCcC----chh---h-hcCCeEEECC-----CCHHHHHH
Confidence 5677788 5553 45777 66799999999 44444 322 222 1 23 3667765 57899999
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhc
Q 045267 425 VVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKWNNN 473 (482)
Q Consensus 425 ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~~ 473 (482)
+|.++|+.+. ++-+++.+++.+.++. -+...-++.|++.+.+.
T Consensus 436 AI~~aL~m~~-~er~~r~~~~~~~v~~-----~~~~~Wa~~fl~~l~~~ 478 (797)
T PLN03063 436 AIKEALNMSD-EERETRHRHNFQYVKT-----HSAQKWADDFMSELNDI 478 (797)
T ss_pred HHHHHHhCCH-HHHHHHHHHHHHhhhh-----CCHHHHHHHHHHHHHHH
Confidence 9999998431 2455666667766664 45667777777766554
No 173
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=71.86 E-value=5.9 Score=37.31 Aligned_cols=33 Identities=12% Similarity=0.152 Sum_probs=23.5
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCC
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSD 49 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~ 49 (482)
|+|+++.. +|. -..|++.|.++ ||+|+..+...
T Consensus 1 m~ILvlGG--T~e---gr~la~~L~~~-g~~v~~s~~t~ 33 (256)
T TIGR00715 1 MTVLLMGG--TVD---SRAIAKGLIAQ-GIEILVTVTTS 33 (256)
T ss_pred CeEEEEec--hHH---HHHHHHHHHhC-CCeEEEEEccC
Confidence 35666643 332 67899999888 99999887553
No 174
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=71.82 E-value=45 Score=32.89 Aligned_cols=104 Identities=14% Similarity=0.113 Sum_probs=63.9
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHhcC-CCEEEEEcCCCCCCchhhhhhhhcCCCceeE-EEecCCCCCCCcchhhHHH
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRLVHRH-HFLVTFFIPSDGPPSEAQKSTLESLPSSINS-VFLPVSLNDVAEDARAETV 88 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L~~r~-GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~ 88 (482)
|||+++-..+.|++.=..++.++|++++ +.+|++++.+. ...+++..|. ++- ..++.. .+. ..
T Consensus 1 mrILii~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~------~~~l~~~~P~-vd~vi~~~~~-----~~~---~~ 65 (348)
T PRK10916 1 MKILVIGPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAW------CRPLLSRMPE-VNEAIPMPLG-----HGA---LE 65 (348)
T ss_pred CcEEEEccCcccHHHhHHHHHHHHHHHCCCCeEEEEechh------hHHHHhcCCc-cCEEEecccc-----cch---hh
Confidence 4799999999999999999999998865 78999999773 3344443332 321 111111 000 00
Q ss_pred HHHHHHhhhHHHHHHHHHHhhCCCccEEEeCCCCccHHHHHHHcCCccEE
Q 045267 89 ISLTVLRSLPCLRQELTSLVAKATVAALVVDLFGTDAFDVAQEFNISPYI 138 (482)
Q Consensus 89 ~~~~~~~~~~~l~~~l~~~~~~~~pD~vi~D~~~~~~~~~A~~lgIP~v~ 138 (482)
+ ....+.++ .++..++|++|.=....-...++...|+|.-+
T Consensus 66 ~--------~~~~~l~~-~lr~~~yD~vidl~~~~~s~~l~~~~~~~~ri 106 (348)
T PRK10916 66 I--------GERRRLGH-SLREKRYDRAYVLPNSFKSALVPFFAGIPHRT 106 (348)
T ss_pred h--------HHHHHHHH-HHHhcCCCEEEECCCcHHHHHHHHHcCCCeEe
Confidence 1 01112222 23455999999655445556777778888554
No 175
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=71.39 E-value=34 Score=33.86 Aligned_cols=107 Identities=12% Similarity=0.023 Sum_probs=63.1
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHhcC-CCEEEEEcCCCCCCchhhhhhhhcCCCcee-EEEecCCCCCCCcchhhHH
Q 045267 10 APHIVLLPSPGMGHLIPLIEFAKRLVHRH-HFLVTFFIPSDGPPSEAQKSTLESLPSSIN-SVFLPVSLNDVAEDARAET 87 (482)
Q Consensus 10 ~~~ili~~~~~~GH~~P~l~La~~L~~r~-GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~ 87 (482)
.++|+++-....|++.=..++.++|.+++ +.+|++++.+.+. .+++..+. ++ +..++.. . ... ..
T Consensus 5 ~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~------~l~~~~P~-id~vi~~~~~--~--~~~--~~ 71 (352)
T PRK10422 5 FRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTI------PILSENPE-INALYGIKNK--K--AGA--SE 71 (352)
T ss_pred CceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChH------HHhccCCC-ceEEEEeccc--c--ccH--HH
Confidence 45799999999999999999999998765 6899999987433 33332232 32 2222211 0 000 00
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhCCCccEEEeCCCCccHHHHHHHcCCccEE
Q 045267 88 VISLTVLRSLPCLRQELTSLVAKATVAALVVDLFGTDAFDVAQEFNISPYI 138 (482)
Q Consensus 88 ~~~~~~~~~~~~l~~~l~~~~~~~~pD~vi~D~~~~~~~~~A~~lgIP~v~ 138 (482)
.+. .+...++ .++..++|++|.-....-...++...|.|..+
T Consensus 72 ~~~--------~~~~l~~-~lr~~~yD~vidl~~~~~s~ll~~l~~a~~ri 113 (352)
T PRK10422 72 KIK--------NFFSLIK-VLRANKYDLIVNLTDQWMVALLVRLLNARVKI 113 (352)
T ss_pred HHH--------HHHHHHH-HHhhCCCCEEEEcccchHHHHHHHHhCCCeEE
Confidence 011 1111222 23456999999654444445667777888654
No 176
>PRK13935 stationary phase survival protein SurE; Provisional
Probab=70.90 E-value=48 Score=31.13 Aligned_cols=39 Identities=18% Similarity=0.209 Sum_probs=25.2
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCC
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPP 52 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 52 (482)
||||+.-=-+. |.--+.+|+++| ++ +|+|+++.|.....
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l-~~-~~~V~VvAP~~~qS 39 (253)
T PRK13935 1 MNILVTNDDGI-TSPGIIILAEYL-SE-KHEVFVVAPDKERS 39 (253)
T ss_pred CeEEEECCCCC-CCHHHHHHHHHH-Hh-CCcEEEEccCCCCc
Confidence 35665543222 334478889999 45 78999999886443
No 177
>KOG0853 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=69.37 E-value=8.1 Score=39.71 Aligned_cols=66 Identities=21% Similarity=0.258 Sum_probs=49.2
Q ss_pred ccCchhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHH
Q 045267 367 HCGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENGIVGRDEIAKVVKALMEGEQGKEVRNKMKD 444 (482)
Q Consensus 367 HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~ 444 (482)
|=|. ++.||+++|+|++.. ++..=+..+++ .--|...++.+ -....+++++.++..|+ +++.+..+
T Consensus 377 ~FGi-v~IEAMa~glPvvAt----~~GGP~EiV~~-~~tG~l~dp~~---e~~~~~a~~~~kl~~~p---~l~~~~~~ 442 (495)
T KOG0853|consen 377 HFGI-VPIEAMACGLPVVAT----NNGGPAEIVVH-GVTGLLIDPGQ---EAVAELADALLKLRRDP---ELWARMGK 442 (495)
T ss_pred Cccc-eeHHHHhcCCCEEEe----cCCCceEEEEc-CCcceeeCCch---HHHHHHHHHHHHHhcCH---HHHHHHHH
Confidence 4443 789999999999987 66666667777 66777777644 44568999999999998 66655544
No 178
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=69.26 E-value=9.8 Score=33.99 Aligned_cols=105 Identities=15% Similarity=0.113 Sum_probs=58.7
Q ss_pred cCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCC-CchhhhhhhhcCCCceeEEEecCCCCCCCcchhhHH
Q 045267 9 AAPHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGP-PSEAQKSTLESLPSSINSVFLPVSLNDVAEDARAET 87 (482)
Q Consensus 9 ~~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 87 (482)
++-.|.+++..+.|-....+.+|-+.+.+ |++|.++=--... ..... ..++.++ ++.+........-..... ..
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~-G~~V~ivQFlKg~~~~GE~-~~l~~l~-~v~~~~~g~~~~~~~~~~--~e 95 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGH-GKKVGVVQFIKGAWSTGER-NLLEFGG-GVEFHVMGTGFTWETQDR--ER 95 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHC-CCeEEEEEEecCCCccCHH-HHHhcCC-CcEEEECCCCCcccCCCc--HH
Confidence 45579999999999999999999999887 9999988421111 10011 1122222 566665552111001111 11
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhCCCccEEEeCCCCc
Q 045267 88 VISLTVLRSLPCLRQELTSLVAKATVAALVVDLFGT 123 (482)
Q Consensus 88 ~~~~~~~~~~~~l~~~l~~~~~~~~pD~vi~D~~~~ 123 (482)
.. ......+ +..++.+.+.++|+||.|-...
T Consensus 96 ~~----~~~~~~~-~~a~~~l~~~~ydlvVLDEi~~ 126 (191)
T PRK05986 96 DI----AAAREGW-EEAKRMLADESYDLVVLDELTY 126 (191)
T ss_pred HH----HHHHHHH-HHHHHHHhCCCCCEEEEehhhH
Confidence 11 1111222 2233444577999999998654
No 179
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=69.02 E-value=7.8 Score=31.51 Aligned_cols=36 Identities=25% Similarity=0.158 Sum_probs=31.9
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCC
Q 045267 12 HIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPS 48 (482)
Q Consensus 12 ~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~ 48 (482)
+|++.+.++..|.....-++..|.++ |++|.++...
T Consensus 1 ~vl~~~~~~e~H~lG~~~~~~~l~~~-G~~V~~lg~~ 36 (119)
T cd02067 1 KVVIATVGGDGHDIGKNIVARALRDA-GFEVIDLGVD 36 (119)
T ss_pred CEEEEeeCCchhhHHHHHHHHHHHHC-CCEEEECCCC
Confidence 48999999999999999999999776 9999888744
No 180
>PRK08760 replicative DNA helicase; Provisional
Probab=68.95 E-value=4.7 Score=41.80 Aligned_cols=40 Identities=20% Similarity=0.203 Sum_probs=33.0
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCC
Q 045267 12 HIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGP 51 (482)
Q Consensus 12 ~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~ 51 (482)
-|++..-|+.|-..=.+.+|...+.++|+.|.|++-+...
T Consensus 231 LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~ 270 (476)
T PRK08760 231 LIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSA 270 (476)
T ss_pred eEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCH
Confidence 3777888999999999999998865459999999877533
No 181
>PRK00346 surE 5'(3')-nucleotidase/polyphosphatase; Provisional
Probab=68.67 E-value=61 Score=30.41 Aligned_cols=39 Identities=23% Similarity=0.227 Sum_probs=24.6
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCC
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPP 52 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 52 (482)
||||+.-=-+. |.--+.+|+++|.+. |+|+++.|.....
T Consensus 1 M~ILlTNDDGi-~a~Gi~aL~~~l~~~--~~V~VvAP~~~qS 39 (250)
T PRK00346 1 MRILLTNDDGI-HAPGIRALAEALREL--ADVTVVAPDRERS 39 (250)
T ss_pred CeEEEECCCCC-CChhHHHHHHHHHhC--CCEEEEeCCCCCc
Confidence 35555542221 333478899999654 6899999875433
No 182
>PRK06321 replicative DNA helicase; Provisional
Probab=68.39 E-value=29 Score=35.98 Aligned_cols=38 Identities=18% Similarity=0.337 Sum_probs=32.1
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCC
Q 045267 13 IVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDG 50 (482)
Q Consensus 13 ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~ 50 (482)
|++..-|+.|-..-.+.+|...+.++|..|.|++-+-.
T Consensus 229 iiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs 266 (472)
T PRK06321 229 MILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMT 266 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence 77788899999999999999887545999999987753
No 183
>PF05159 Capsule_synth: Capsule polysaccharide biosynthesis protein; InterPro: IPR007833 This family includes export proteins involved in capsule polysaccharide biosynthesis, such as KpsS P42218 from SWISSPROT and LipB P57038 from SWISSPROT. Capsule polysaccharide modification protein lipB/A is involved in the phospholipid modification of the capsular polysaccharide and is a strong requirement for its translocation to the cell surface. The capsule of Neisseria meningitidis serogroup B and of other meningococcal serogroups and other Gram-negative bacterial pathogens, are anchored in the outer membrane through a 1,2-diacylglycerol moiety. The lipA and lipB genes are located on the 3' end of the ctr operon. lipA and lipB do not encode proteins responsible for diacylglycerophosphatidic acid substitution of the meningococcal capsule polymer, but they are required for proper translocation and surface expression of the lipidated polymer []. KpsS is an unusual sulphate-modified form of the capsular polysaccharide in Rhizobium loti (Mesorhizobium loti). Many plants, including R. loti, enter into symbiotic relationships with bacteria that allow survival in nutrient-limiting environments. KpsS functions as a fucosyl sulphotransferase in vitro. The kpsS gene product shares no significant amino acid similarity with previously identified sulphotransferases []. Sulphated cell surface polysaccharides are required for optimum nodule formation but limit growth rate and nodule colonisation in M. loti [].; GO: 0000271 polysaccharide biosynthetic process, 0015774 polysaccharide transport
Probab=67.60 E-value=36 Score=32.20 Aligned_cols=43 Identities=14% Similarity=0.236 Sum_probs=35.1
Q ss_pred CeeeccccchhhhhhcccccccccccCchhHHHHhhcCCcEeeccc
Q 045267 343 GMLVPSWAPQAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAWPL 388 (482)
Q Consensus 343 ~v~~~~~ipq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~ 388 (482)
.+.+.+-++-.+++.+++ .+||-.+ ++-.||+.+|+|++++.-
T Consensus 184 ~~~~~~~~~~~~Ll~~s~--~VvtinS-tvGlEAll~gkpVi~~G~ 226 (269)
T PF05159_consen 184 VVIIDDDVNLYELLEQSD--AVVTINS-TVGLEALLHGKPVIVFGR 226 (269)
T ss_pred eEEECCCCCHHHHHHhCC--EEEEECC-HHHHHHHHcCCceEEecC
Confidence 344567778889999999 8888766 477899999999999864
No 184
>PRK06849 hypothetical protein; Provisional
Probab=67.34 E-value=29 Score=34.92 Aligned_cols=36 Identities=8% Similarity=0.060 Sum_probs=27.3
Q ss_pred cCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCC
Q 045267 9 AAPHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSD 49 (482)
Q Consensus 9 ~~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~ 49 (482)
++|+|+|+... ..-.+.+++.|.++ ||+|..+....
T Consensus 3 ~~~~VLI~G~~----~~~~l~iar~l~~~-G~~Vi~~d~~~ 38 (389)
T PRK06849 3 TKKTVLITGAR----APAALELARLFHNA-GHTVILADSLK 38 (389)
T ss_pred CCCEEEEeCCC----cHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence 35778887533 23689999999887 99999997653
No 185
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=66.87 E-value=8.7 Score=36.39 Aligned_cols=53 Identities=15% Similarity=0.068 Sum_probs=39.5
Q ss_pred cccccccccccCchhHHHHhh------cCCcEeeccccccchhhHHHHHhhcceeeeeccCCCCccCHHHHHHHHHHHhc
Q 045267 358 HGSTGGFLCHCGWNSVLESVV------NGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENGIVGRDEIAKVVKALME 431 (482)
Q Consensus 358 ~~~~~~~I~HGG~gs~~eal~------~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~vl~ 431 (482)
.++ ++|+-||-||+..|+. .++|++.+- .|...-..+ +.++++.+++.++++
T Consensus 35 ~~D--lvi~iGGDGT~L~a~~~~~~~~~~iPilGIN-----------------~G~lGFL~~---~~~~~~~~~l~~i~~ 92 (265)
T PRK04885 35 NPD--IVISVGGDGTLLSAFHRYENQLDKVRFVGVH-----------------TGHLGFYTD---WRPFEVDKLVIALAK 92 (265)
T ss_pred CCC--EEEEECCcHHHHHHHHHhcccCCCCeEEEEe-----------------CCCceeccc---CCHHHHHHHHHHHHc
Confidence 456 9999999999999976 488988874 232222333 677888899998887
Q ss_pred C
Q 045267 432 G 432 (482)
Q Consensus 432 ~ 432 (482)
+
T Consensus 93 g 93 (265)
T PRK04885 93 D 93 (265)
T ss_pred C
Confidence 6
No 186
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=66.21 E-value=18 Score=31.28 Aligned_cols=37 Identities=27% Similarity=0.462 Sum_probs=32.4
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcC
Q 045267 10 APHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIP 47 (482)
Q Consensus 10 ~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~ 47 (482)
.|+|.+...|+-|-..-.+.|+..|.++ |+.|-=+.+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L~~~-g~kvgGf~t 41 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKLREK-GYKVGGFIT 41 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHhc-CceeeeEEe
Confidence 4689999999999999999999999887 999874443
No 187
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=65.99 E-value=29 Score=33.68 Aligned_cols=40 Identities=15% Similarity=0.168 Sum_probs=31.5
Q ss_pred EEEEEc-CCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCC
Q 045267 12 HIVLLP-SPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPP 52 (482)
Q Consensus 12 ~ili~~-~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 52 (482)
|++|+. =|+-|-..-..++|-.++++ |++|.+++.++.+.
T Consensus 2 r~~~~~GKGGVGKTT~aaA~A~~~A~~-G~rtLlvS~Dpa~~ 42 (305)
T PF02374_consen 2 RILFFGGKGGVGKTTVAAALALALARR-GKRTLLVSTDPAHS 42 (305)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHT-TS-EEEEESSTTTH
T ss_pred eEEEEecCCCCCcHHHHHHHHHHHhhC-CCCeeEeecCCCcc
Confidence 455554 46779999999999999988 99999999876544
No 188
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=65.23 E-value=43 Score=30.86 Aligned_cols=41 Identities=20% Similarity=0.301 Sum_probs=32.9
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCC
Q 045267 12 HIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPP 52 (482)
Q Consensus 12 ~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 52 (482)
-+++...++.|=..=.+.++..++.++|+.|.|++.+....
T Consensus 15 l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~~ 55 (242)
T cd00984 15 LIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSKE 55 (242)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCHH
Confidence 36677777889999999998888766699999999875433
No 189
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=64.70 E-value=24 Score=38.80 Aligned_cols=112 Identities=18% Similarity=0.115 Sum_probs=68.0
Q ss_pred eeccccchhh---hhhccccccccc---ccCch-hHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCCCCcc
Q 045267 345 LVPSWAPQAQ---VLSHGSTGGFLC---HCGWN-SVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENGIV 417 (482)
Q Consensus 345 ~~~~~ipq~~---lL~~~~~~~~I~---HGG~g-s~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~ 417 (482)
.+.+++++.+ ++..++ +|+. .-|+| ++.||+++|+|-..+|+..+--.-+. + +.-|+.+++ .
T Consensus 345 ~~~~~~~~~~l~~ly~~aD--v~v~~S~~EG~~lv~~Eama~~~~~~g~~vls~~~G~~~---~-l~~~llv~P-----~ 413 (726)
T PRK14501 345 YFYRSLPFEELVALYRAAD--VALVTPLRDGMNLVAKEYVASRTDGDGVLILSEMAGAAA---E-LAEALLVNP-----N 413 (726)
T ss_pred EEeCCCCHHHHHHHHHhcc--EEEecccccccCcccceEEEEcCCCCceEEEecccchhH---H-hCcCeEECC-----C
Confidence 4556778665 666788 5553 23544 78899999876222222221111111 2 222666654 4
Q ss_pred CHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhc
Q 045267 418 GRDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKWNNN 473 (482)
Q Consensus 418 ~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~~ 473 (482)
+.++++++|.++|+++. ++.+++.+++.+.+++ -+...-+++|++.+.+.
T Consensus 414 d~~~la~ai~~~l~~~~-~e~~~r~~~~~~~v~~-----~~~~~w~~~~l~~l~~~ 463 (726)
T PRK14501 414 DIEGIAAAIKRALEMPE-EEQRERMQAMQERLRR-----YDVHKWASDFLDELREA 463 (726)
T ss_pred CHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHH
Confidence 78999999999998652 1445555556555543 56777888888777665
No 190
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=64.66 E-value=92 Score=28.10 Aligned_cols=145 Identities=11% Similarity=0.031 Sum_probs=78.3
Q ss_pred CcEEEEeccCCCCCCHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCcccccCCCCCCCCCCchhHHhhhcCCCeeecccc
Q 045267 271 GSVLFVSFGSGGTLSCEQLNELALGLEMSEQRFLWVVRSPNNAANSTFFSVNSHKDPYDFLPKGFLDRTKGRGMLVPSWA 350 (482)
Q Consensus 271 ~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~i 350 (482)
+.++.|+.|.+. ...++.|...+..+.++... +.+.+.+......+......
T Consensus 11 k~vLVIGgG~va-------~~ka~~Ll~~ga~V~VIs~~---------------------~~~~l~~l~~~~~i~~~~~~ 62 (202)
T PRK06718 11 KRVVIVGGGKVA-------GRRAITLLKYGAHIVVISPE---------------------LTENLVKLVEEGKIRWKQKE 62 (202)
T ss_pred CEEEEECCCHHH-------HHHHHHHHHCCCeEEEEcCC---------------------CCHHHHHHHhCCCEEEEecC
Confidence 568888887543 22344455567666555321 11222222222334444444
Q ss_pred chhhhhhcccccccccccCchhHHHHhh----cCCcEeeccccccchhh-----HHHHHhhcceeeeeccCCCCccCHHH
Q 045267 351 PQAQVLSHGSTGGFLCHCGWNSVLESVV----NGVPLIAWPLYAEQKMN-----AVILTEDVKLALRPKANENGIVGRDE 421 (482)
Q Consensus 351 pq~~lL~~~~~~~~I~HGG~gs~~eal~----~GvP~v~~P~~~DQ~~n-----a~rv~~~~G~G~~l~~~~~~~~~~~~ 421 (482)
.+..-+..++ ++|.--+.-.+.+.++ .++++-++ |.+.. -..+.+ -++-+.+..+.....-...
T Consensus 63 ~~~~~l~~ad--lViaaT~d~elN~~i~~~a~~~~lvn~~----d~~~~~~f~~Pa~~~~-g~l~iaIsT~G~sP~la~~ 135 (202)
T PRK06718 63 FEPSDIVDAF--LVIAATNDPRVNEQVKEDLPENALFNVI----TDAESGNVVFPSALHR-GKLTISVSTDGASPKLAKK 135 (202)
T ss_pred CChhhcCCce--EEEEcCCCHHHHHHHHHHHHhCCcEEEC----CCCccCeEEEeeEEEc-CCeEEEEECCCCChHHHHH
Confidence 4555677788 8888777666666554 45554443 33322 223333 3444444443311233577
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Q 045267 422 IAKVVKALMEGEQGKEVRNKMKDLKDAAAA 451 (482)
Q Consensus 422 l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~ 451 (482)
|++.|.+++ .++...+-+.+.++++.+++
T Consensus 136 lr~~ie~~~-~~~~~~~~~~~~~~R~~~k~ 164 (202)
T PRK06718 136 IRDELEALY-DESYESYIDFLYECRQKIKE 164 (202)
T ss_pred HHHHHHHHc-chhHHHHHHHHHHHHHHHHH
Confidence 888888777 33334677788888888876
No 191
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=64.33 E-value=9.2 Score=31.72 Aligned_cols=36 Identities=14% Similarity=0.185 Sum_probs=29.6
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCC
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPS 48 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~ 48 (482)
|||++...|+.+-.. ...+.++|.++ |++|.++.++
T Consensus 1 k~i~l~vtGs~~~~~-~~~~l~~L~~~-g~~v~vv~S~ 36 (129)
T PF02441_consen 1 KRILLGVTGSIAAYK-APDLLRRLKRA-GWEVRVVLSP 36 (129)
T ss_dssp -EEEEEE-SSGGGGG-HHHHHHHHHTT-TSEEEEEESH
T ss_pred CEEEEEEECHHHHHH-HHHHHHHHhhC-CCEEEEEECC
Confidence 478888888877777 99999999887 9999999877
No 192
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=64.07 E-value=11 Score=36.26 Aligned_cols=55 Identities=11% Similarity=0.103 Sum_probs=40.5
Q ss_pred hhcccccccccccCchhHHHHhh----cCCcEeeccccccchhhHHHHHhhcceeeeeccCCCCccCHHHHHHHHHHHhc
Q 045267 356 LSHGSTGGFLCHCGWNSVLESVV----NGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENGIVGRDEIAKVVKALME 431 (482)
Q Consensus 356 L~~~~~~~~I~HGG~gs~~eal~----~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~vl~ 431 (482)
...++ ++|+-||-||+..++. .++|++.+ .+|...-..+ ++++++.+++++++.
T Consensus 62 ~~~~D--lvi~iGGDGT~L~aa~~~~~~~~PilGI-----------------N~G~lGFLt~---~~~~~~~~~l~~i~~ 119 (287)
T PRK14077 62 FKISD--FLISLGGDGTLISLCRKAAEYDKFVLGI-----------------HAGHLGFLTD---ITVDEAEKFFQAFFQ 119 (287)
T ss_pred ccCCC--EEEEECCCHHHHHHHHHhcCCCCcEEEE-----------------eCCCcccCCc---CCHHHHHHHHHHHHc
Confidence 34577 9999999999998865 37788776 3333333344 778999999999987
Q ss_pred C
Q 045267 432 G 432 (482)
Q Consensus 432 ~ 432 (482)
+
T Consensus 120 g 120 (287)
T PRK14077 120 G 120 (287)
T ss_pred C
Confidence 6
No 193
>PRK05748 replicative DNA helicase; Provisional
Probab=63.52 E-value=15 Score=37.90 Aligned_cols=39 Identities=18% Similarity=0.295 Sum_probs=32.6
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCC
Q 045267 12 HIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDG 50 (482)
Q Consensus 12 ~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~ 50 (482)
-|++...|+.|-..=.+.++...+.++|+.|.|++.+..
T Consensus 205 livIaarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms 243 (448)
T PRK05748 205 LIIVAARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMG 243 (448)
T ss_pred eEEEEeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 377888899999999999999876445999999987753
No 194
>PRK05647 purN phosphoribosylglycinamide formyltransferase; Reviewed
Probab=63.19 E-value=57 Score=29.41 Aligned_cols=35 Identities=17% Similarity=0.091 Sum_probs=22.1
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHhc-CCCEEEEEcCC
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRLVHR-HHFLVTFFIPS 48 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L~~r-~GH~Vt~~~~~ 48 (482)
|||+++..+..+-+. +|.+++.+. .+++|.++.+.
T Consensus 2 ~ki~vl~sg~gs~~~---~ll~~~~~~~~~~~I~~vvs~ 37 (200)
T PRK05647 2 KRIVVLASGNGSNLQ---AIIDACAAGQLPAEIVAVISD 37 (200)
T ss_pred ceEEEEEcCCChhHH---HHHHHHHcCCCCcEEEEEEec
Confidence 679999987755554 455556443 13778876544
No 195
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=62.98 E-value=12 Score=35.97 Aligned_cols=54 Identities=17% Similarity=0.215 Sum_probs=39.7
Q ss_pred hcccccccccccCchhHHHHhhc----CCcEeeccccccchhhHHHHHhhcceeeeeccCCCCccCHHHHHHHHHHHhcC
Q 045267 357 SHGSTGGFLCHCGWNSVLESVVN----GVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENGIVGRDEIAKVVKALMEG 432 (482)
Q Consensus 357 ~~~~~~~~I~HGG~gs~~eal~~----GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~vl~~ 432 (482)
..++ ++|+-||-||+.+++.. ++|++.+- +|..--..+ ++.+++.+++.+++++
T Consensus 62 ~~~d--~vi~~GGDGt~l~~~~~~~~~~~pilGIn-----------------~G~lGFL~~---~~~~~~~~~l~~~~~g 119 (291)
T PRK02155 62 ARAD--LAVVLGGDGTMLGIGRQLAPYGVPLIGIN-----------------HGRLGFITD---IPLDDMQETLPPMLAG 119 (291)
T ss_pred cCCC--EEEEECCcHHHHHHHHHhcCCCCCEEEEc-----------------CCCcccccc---CCHHHHHHHHHHHHcC
Confidence 3567 99999999999999763 67877763 222222223 7789999999999876
No 196
>PHA02542 41 41 helicase; Provisional
Probab=62.74 E-value=6.6 Score=40.63 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=32.2
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCC
Q 045267 13 IVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDG 50 (482)
Q Consensus 13 ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~ 50 (482)
|++..-|+.|-..-.+.+|...++. |+.|.|++-+-.
T Consensus 193 iiIaarPgmGKTtfalniA~~~a~~-g~~Vl~fSLEM~ 229 (473)
T PHA02542 193 NVLLAGVNVGKSLGLCSLAADYLQQ-GYNVLYISMEMA 229 (473)
T ss_pred EEEEcCCCccHHHHHHHHHHHHHhc-CCcEEEEeccCC
Confidence 7777889999999999999998876 999999987643
No 197
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=62.10 E-value=62 Score=29.45 Aligned_cols=33 Identities=12% Similarity=0.191 Sum_probs=26.7
Q ss_pred EEEEcCCC-CCChHHHHHHHHHHHhcCCCEEEEEc
Q 045267 13 IVLLPSPG-MGHLIPLIEFAKRLVHRHHFLVTFFI 46 (482)
Q Consensus 13 ili~~~~~-~GH~~P~l~La~~L~~r~GH~Vt~~~ 46 (482)
|.|.+..+ .|-..-.+.|++.|.++ |++|.++=
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~~-g~~v~~~K 35 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALREA-GYSVAGYK 35 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHHc-CCceEEEe
Confidence 45554444 59999999999999888 99998875
No 198
>PRK05636 replicative DNA helicase; Provisional
Probab=61.07 E-value=25 Score=36.77 Aligned_cols=38 Identities=18% Similarity=0.356 Sum_probs=31.3
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCC
Q 045267 13 IVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDG 50 (482)
Q Consensus 13 ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~ 50 (482)
|++..-|+.|-..=.+.+|...+.++|..|.|++.+..
T Consensus 268 iiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs 305 (505)
T PRK05636 268 IIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMS 305 (505)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCC
Confidence 67788889999999999998876555899999987753
No 199
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=60.89 E-value=56 Score=33.48 Aligned_cols=28 Identities=18% Similarity=0.231 Sum_probs=22.5
Q ss_pred hCCCccEEEeCCCCccHHHHHHHcCCccEEE
Q 045267 109 AKATVAALVVDLFGTDAFDVAQEFNISPYIF 139 (482)
Q Consensus 109 ~~~~pD~vi~D~~~~~~~~~A~~lgIP~v~~ 139 (482)
+..+||++|.... ...+|+++|||++.+
T Consensus 374 ~~~~pDliiG~s~---~~~~a~~~gip~v~~ 401 (435)
T cd01974 374 FTEPVDLLIGNTY---GKYIARDTDIPLVRF 401 (435)
T ss_pred hhcCCCEEEECcc---HHHHHHHhCCCEEEe
Confidence 3458999998874 578899999998754
No 200
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=60.25 E-value=90 Score=29.26 Aligned_cols=37 Identities=19% Similarity=0.108 Sum_probs=31.4
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCC
Q 045267 13 IVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDG 50 (482)
Q Consensus 13 ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~ 50 (482)
|++..-|+.|...-...+|..++++ |++|.++..+..
T Consensus 3 ~~~~gkgG~GKtt~a~~la~~~a~~-g~~vLlvd~D~~ 39 (254)
T cd00550 3 IFFGGKGGVGKTTISAATAVRLAEQ-GKKVLLVSTDPA 39 (254)
T ss_pred EEEECCCCchHHHHHHHHHHHHHHC-CCCceEEeCCCc
Confidence 4555567889999999999999887 999999987754
No 201
>PRK05973 replicative DNA helicase; Provisional
Probab=60.02 E-value=34 Score=31.76 Aligned_cols=38 Identities=21% Similarity=0.231 Sum_probs=32.9
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCC
Q 045267 12 HIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDG 50 (482)
Q Consensus 12 ~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~ 50 (482)
-+++..-|+.|-..=.+.++...+++ |+.|.|++.+..
T Consensus 66 l~LIaG~PG~GKT~lalqfa~~~a~~-Ge~vlyfSlEes 103 (237)
T PRK05973 66 LVLLGARPGHGKTLLGLELAVEAMKS-GRTGVFFTLEYT 103 (237)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEEEeCC
Confidence 47778888999999999999988877 999999997754
No 202
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=59.02 E-value=18 Score=35.36 Aligned_cols=46 Identities=9% Similarity=-0.003 Sum_probs=31.9
Q ss_pred HhhhHHHHHHHHHHhhCCCccEEEeCCCCccHH----------HHHHHcCCccEEE
Q 045267 94 LRSLPCLRQELTSLVAKATVAALVVDLFGTDAF----------DVAQEFNISPYIF 139 (482)
Q Consensus 94 ~~~~~~l~~~l~~~~~~~~pD~vi~D~~~~~~~----------~~A~~lgIP~v~~ 139 (482)
....++..+.+.+++++.+||++|+.+.+.++. .+.++++||+++-
T Consensus 62 ~en~eea~~~i~~mv~~~~pD~viaGPaFnagrYG~acg~v~~aV~e~~~IP~vta 117 (349)
T PF07355_consen 62 NENKEEALKKILEMVKKLKPDVVIAGPAFNAGRYGVACGEVAKAVQEKLGIPVVTA 117 (349)
T ss_pred hhCHHHHHHHHHHHHHhcCCCEEEEcCCcCCchHHHHHHHHHHHHHHhhCCCEEEE
Confidence 334455556666777788999999998654321 2556899998863
No 203
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=58.65 E-value=39 Score=31.37 Aligned_cols=32 Identities=16% Similarity=0.094 Sum_probs=22.2
Q ss_pred CccEEE-eCCCCc-cHHHHHHHcCCccEEEccch
Q 045267 112 TVAALV-VDLFGT-DAFDVAQEFNISPYIFYPST 143 (482)
Q Consensus 112 ~pD~vi-~D~~~~-~~~~~A~~lgIP~v~~~~~~ 143 (482)
-||+++ +|+..- -|..=|.++|||+|.+.-+.
T Consensus 156 ~Pd~l~ViDp~~e~iAv~EA~klgIPVvAlvDTn 189 (252)
T COG0052 156 LPDVLFVIDPRKEKIAVKEANKLGIPVVALVDTN 189 (252)
T ss_pred CCCEEEEeCCcHhHHHHHHHHHcCCCEEEEecCC
Confidence 499887 555332 25567888999999876543
No 204
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=58.27 E-value=16 Score=35.16 Aligned_cols=56 Identities=14% Similarity=0.259 Sum_probs=41.5
Q ss_pred hhhcccccccccccCchhHHHHhh----cCCcEeeccccccchhhHHHHHhhcceeeeeccCCCCccCHHHHHHHHHHHh
Q 045267 355 VLSHGSTGGFLCHCGWNSVLESVV----NGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENGIVGRDEIAKVVKALM 430 (482)
Q Consensus 355 lL~~~~~~~~I~HGG~gs~~eal~----~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~vl 430 (482)
+...++ ++|+=||-||+..++. .++|++.+- .|..--..+ ++++++.+++++++
T Consensus 61 ~~~~~d--lvi~lGGDGT~L~aa~~~~~~~~PilGIN-----------------~G~lGFLt~---~~~~~~~~~l~~i~ 118 (292)
T PRK01911 61 LDGSAD--MVISIGGDGTFLRTATYVGNSNIPILGIN-----------------TGRLGFLAT---VSKEEIEETIDELL 118 (292)
T ss_pred cccCCC--EEEEECCcHHHHHHHHHhcCCCCCEEEEe-----------------cCCCCcccc---cCHHHHHHHHHHHH
Confidence 334567 9999999999999876 378888773 333223333 77899999999999
Q ss_pred cC
Q 045267 431 EG 432 (482)
Q Consensus 431 ~~ 432 (482)
++
T Consensus 119 ~g 120 (292)
T PRK01911 119 NG 120 (292)
T ss_pred cC
Confidence 76
No 205
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=57.68 E-value=19 Score=27.95 Aligned_cols=82 Identities=15% Similarity=0.261 Sum_probs=44.6
Q ss_pred HHHHHHHHHhcCCCEEEEEcCCCCCCchhhhhhhhcCCCceeEEEec--CCCCCCCcchhhHHHHHHHHHhhhHHHHHHH
Q 045267 27 LIEFAKRLVHRHHFLVTFFIPSDGPPSEAQKSTLESLPSSINSVFLP--VSLNDVAEDARAETVISLTVLRSLPCLRQEL 104 (482)
Q Consensus 27 ~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 104 (482)
++.+|+.|.+. |+++. +++ .....++ ..|+.+..+- ....+.+.+.. .+
T Consensus 2 ~~~~a~~l~~l-G~~i~--AT~------gTa~~L~--~~Gi~~~~v~~~~~~~~~~~g~~------------------~i 52 (95)
T PF02142_consen 2 IVPLAKRLAEL-GFEIY--ATE------GTAKFLK--EHGIEVTEVVNKIGEGESPDGRV------------------QI 52 (95)
T ss_dssp HHHHHHHHHHT-TSEEE--EEH------HHHHHHH--HTT--EEECCEEHSTG-GGTHCH------------------HH
T ss_pred HHHHHHHHHHC-CCEEE--ECh------HHHHHHH--HcCCCceeeeeecccCccCCchh------------------HH
Confidence 57899999887 97763 222 2334444 3356644443 22221122111 34
Q ss_pred HHHhhCCCccEEEeCCCCcc------H---HHHHHHcCCccE
Q 045267 105 TSLVAKATVAALVVDLFGTD------A---FDVAQEFNISPY 137 (482)
Q Consensus 105 ~~~~~~~~pD~vi~D~~~~~------~---~~~A~~lgIP~v 137 (482)
.++++..+.|+||....... + ..+|...+||++
T Consensus 53 ~~~i~~~~IdlVIn~~~~~~~~~~~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 53 MDLIKNGKIDLVINTPYPFSDQEHTDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp HHHHHTTSEEEEEEE--THHHHHTHHHHHHHHHHHHTTSHEE
T ss_pred HHHHHcCCeEEEEEeCCCCcccccCCcHHHHHHHHHcCCCCc
Confidence 45566779999997764322 1 357888899965
No 206
>KOG3339 consensus Predicted glycosyltransferase [General function prediction only]
Probab=57.62 E-value=1.2e+02 Score=26.87 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=19.8
Q ss_pred EEEcCCCCCChHHHHHHHHHHHhc
Q 045267 14 VLLPSPGMGHLIPLIEFAKRLVHR 37 (482)
Q Consensus 14 li~~~~~~GH~~P~l~La~~L~~r 37 (482)
.++..|+.||.-=|+.|-+.|.++
T Consensus 41 ~lVvlGSGGHT~EMlrLl~~l~~~ 64 (211)
T KOG3339|consen 41 TLVVLGSGGHTGEMLRLLEALQDL 64 (211)
T ss_pred EEEEEcCCCcHHHHHHHHHHHHhh
Confidence 344458999999999999999665
No 207
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=57.59 E-value=15 Score=32.63 Aligned_cols=39 Identities=15% Similarity=0.187 Sum_probs=27.2
Q ss_pred CCEEEEEcCCCCCChHH------------HHHHHHHHHhcCCCEEEEEcCCC
Q 045267 10 APHIVLLPSPGMGHLIP------------LIEFAKRLVHRHHFLVTFFIPSD 49 (482)
Q Consensus 10 ~~~ili~~~~~~GH~~P------------~l~La~~L~~r~GH~Vt~~~~~~ 49 (482)
.++|+|...|+.=.+.| =..||+++.++ ||+|++++.+.
T Consensus 3 gk~vlITaG~T~E~iD~VR~ItN~SSG~~G~~lA~~~~~~-Ga~V~li~g~~ 53 (185)
T PF04127_consen 3 GKKVLITAGPTREPIDPVRFITNRSSGKMGAALAEEAARR-GAEVTLIHGPS 53 (185)
T ss_dssp T-EEEEEESB-EEESSSSEEEEES--SHHHHHHHHHHHHT-T-EEEEEE-TT
T ss_pred CCEEEEECCCccccCCCceEecCCCcCHHHHHHHHHHHHC-CCEEEEEecCc
Confidence 35677777777666655 36899999888 99999998763
No 208
>TIGR00087 surE 5'/3'-nucleotidase SurE. E. coli SurE is Recommended cutoffs are 15 for homology, 40 for probable orthology, and 200 for orthology with full-length homology.
Probab=57.36 E-value=71 Score=29.86 Aligned_cols=38 Identities=18% Similarity=0.095 Sum_probs=24.6
Q ss_pred CEEEEEcCCCCCC-hHHHHHHHHHHHhcCCCEEEEEcCCCCCC
Q 045267 11 PHIVLLPSPGMGH-LIPLIEFAKRLVHRHHFLVTFFIPSDGPP 52 (482)
Q Consensus 11 ~~ili~~~~~~GH-~~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 52 (482)
||||+.- -.|- .--+.+|+++|.+. | +|+++.|.....
T Consensus 1 M~ILltN--DDGi~a~Gi~aL~~~l~~~-g-~V~VvAP~~~~S 39 (244)
T TIGR00087 1 MKILLTN--DDGIHSPGIRALYQALKEL-G-EVTVVAPARQRS 39 (244)
T ss_pred CeEEEEC--CCCCCCHhHHHHHHHHHhC-C-CEEEEeCCCCcc
Confidence 3555443 2232 33477899999776 8 899999876444
No 209
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=57.22 E-value=1.1e+02 Score=26.38 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=22.5
Q ss_pred ccccccccCch------hHHHHhhcCCcEeecc
Q 045267 361 TGGFLCHCGWN------SVLESVVNGVPLIAWP 387 (482)
Q Consensus 361 ~~~~I~HGG~g------s~~eal~~GvP~v~~P 387 (482)
.+++++|.|-| .+.+|...++|||++.
T Consensus 64 ~~v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~ 96 (164)
T cd07039 64 LGVCLGSSGPGAIHLLNGLYDAKRDRAPVLAIA 96 (164)
T ss_pred CEEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 34888888855 7889999999999996
No 210
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=57.08 E-value=18 Score=37.06 Aligned_cols=41 Identities=22% Similarity=0.271 Sum_probs=33.3
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCC
Q 045267 12 HIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPP 52 (482)
Q Consensus 12 ~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 52 (482)
-+++...|+.|=..=.+.+|..++.++|+.|.|++-+...+
T Consensus 197 l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~ 237 (434)
T TIGR00665 197 LIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAE 237 (434)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHH
Confidence 36777888999999999999988764599999999875433
No 211
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=57.06 E-value=66 Score=31.27 Aligned_cols=39 Identities=5% Similarity=0.189 Sum_probs=34.6
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHhcC-CCEEEEEcCCC
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRLVHRH-HFLVTFFIPSD 49 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L~~r~-GH~Vt~~~~~~ 49 (482)
|||+++-....|++.=..++.+.|+++. +.+|++++.+.
T Consensus 1 m~ILii~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~~ 40 (322)
T PRK10964 1 MRVLIVKTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEEG 40 (322)
T ss_pred CeEEEEeccchHHHHhHHHHHHHHHHhCCCCEEEEEECHH
Confidence 5799999999999999999999998765 79999999773
No 212
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=56.76 E-value=17 Score=35.30 Aligned_cols=54 Identities=17% Similarity=0.200 Sum_probs=40.6
Q ss_pred hcccccccccccCchhHHHHhhc----CCcEeeccccccchhhHHHHHhhcceeeeeccCCCCccCHHHHHHHHHHHhcC
Q 045267 357 SHGSTGGFLCHCGWNSVLESVVN----GVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENGIVGRDEIAKVVKALMEG 432 (482)
Q Consensus 357 ~~~~~~~~I~HGG~gs~~eal~~----GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~vl~~ 432 (482)
..++ ++|+=||-||+..|... ++|++.+- .|...-..+ ++++++.+++.+++++
T Consensus 67 ~~~D--lvi~iGGDGTlL~aar~~~~~~iPilGIN-----------------~G~lGFLt~---~~~~~~~~~l~~l~~g 124 (305)
T PRK02649 67 SSMK--FAIVLGGDGTVLSAARQLAPCGIPLLTIN-----------------TGHLGFLTE---AYLNQLDEAIDQVLAG 124 (305)
T ss_pred cCcC--EEEEEeCcHHHHHHHHHhcCCCCcEEEEe-----------------CCCCccccc---CCHHHHHHHHHHHHcC
Confidence 3567 99999999999999764 78988873 332222333 6789999999999876
No 213
>PRK07773 replicative DNA helicase; Validated
Probab=55.84 E-value=12 Score=42.18 Aligned_cols=126 Identities=17% Similarity=0.185 Sum_probs=70.2
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCCchhhhhhhhcCCCceeEEEecCCCCCCCc-chhhHH-HHH
Q 045267 13 IVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPPSEAQKSTLESLPSSINSVFLPVSLNDVAE-DARAET-VIS 90 (482)
Q Consensus 13 ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~-~~~ 90 (482)
|++..-|+.|-..-.+.+|...+.++|..|.|++-+...+. -...+... ..++....+ ....+.. .+.... .+.
T Consensus 220 ivIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~q-l~~R~~s~-~~~i~~~~i--~~g~l~~~~~~~~~~a~~ 295 (886)
T PRK07773 220 IIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQ-LVMRLLSA-EAKIKLSDM--RSGRMSDDDWTRLARAMG 295 (886)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHH-HHHHHHHH-hcCCCHHHH--hcCCCCHHHHHHHHHHHH
Confidence 77788889999999999999987655899999987653331 11111111 112222111 1111111 111100 000
Q ss_pred HHH----------HhhhHHHHHHHHHHhhCCCccEEEeCCCCccH-------------------HHHHHHcCCccEEEcc
Q 045267 91 LTV----------LRSLPCLRQELTSLVAKATVAALVVDLFGTDA-------------------FDVAQEFNISPYIFYP 141 (482)
Q Consensus 91 ~~~----------~~~~~~l~~~l~~~~~~~~pD~vi~D~~~~~~-------------------~~~A~~lgIP~v~~~~ 141 (482)
... ......+...++++.+..+.|+||+|++..-. -.+|.+++||++.++-
T Consensus 296 ~l~~~~i~i~d~~~~~i~~i~~~~r~~~~~~~~~lvvIDyLql~~~~~~~~~r~~ei~~isr~LK~lAkel~vpvi~lsQ 375 (886)
T PRK07773 296 EISEAPIFIDDTPNLTVMEIRAKARRLRQEANLGLIVVDYLQLMTSGKKYENRQQEVSEISRHLKLLAKELEVPVVALSQ 375 (886)
T ss_pred HHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCEEEEcchhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHCCcEEEecc
Confidence 000 01234555556666556689999999843220 1478899999888754
Q ss_pred c
Q 045267 142 S 142 (482)
Q Consensus 142 ~ 142 (482)
.
T Consensus 376 L 376 (886)
T PRK07773 376 L 376 (886)
T ss_pred c
Confidence 3
No 214
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=55.75 E-value=1.4e+02 Score=30.29 Aligned_cols=39 Identities=26% Similarity=0.296 Sum_probs=32.2
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCC
Q 045267 12 HIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDG 50 (482)
Q Consensus 12 ~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~ 50 (482)
-+++...|+.|-..=.+.+|..++.+.|+.|.|++.+..
T Consensus 196 liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~ 234 (421)
T TIGR03600 196 LIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMS 234 (421)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC
Confidence 377788889999999999998886334999999997753
No 215
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=55.62 E-value=82 Score=28.27 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=31.9
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCC
Q 045267 12 HIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPP 52 (482)
Q Consensus 12 ~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 52 (482)
.|+++...+-|-..-...||..++.+ |.+|.+++.+.+..
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~R~ 42 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTYRI 42 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTSST
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCCCc
Confidence 46666666779999999999999988 99999999876654
No 216
>PF02702 KdpD: Osmosensitive K+ channel His kinase sensor domain; InterPro: IPR003852 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represents the N-terminal domain found in KdpD sensor kinase proteins, which regulate the kdpFABC operon responsible for potassium transport []. The N-terminal domain forms part of the cytoplasmic region of the protein, which may be the sensor domain responsible for sensing turgor pressure [].; GO: 0000155 two-component sensor activity, 0004673 protein histidine kinase activity, 0000160 two-component signal transduction system (phosphorelay), 0016020 membrane; PDB: 2R8R_B.
Probab=55.56 E-value=17 Score=32.68 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=30.9
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCC
Q 045267 10 APHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDG 50 (482)
Q Consensus 10 ~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~ 50 (482)
+++|.+-..|+-|-.+.||.=|++|.++ |.+|.+..-+..
T Consensus 5 rLkIflG~apGVGKTy~ML~ea~~l~~~-G~DVViG~veth 44 (211)
T PF02702_consen 5 RLKIFLGAAPGVGKTYAMLQEAHRLKEQ-GVDVVIGYVETH 44 (211)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHT-T--EEEEE---T
T ss_pred cEEEEEecCCCCCHHHHHHHHHHHHHHC-CCCEEEEEecCC
Confidence 4678888889999999999999999998 999999876643
No 217
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=55.51 E-value=1.5e+02 Score=26.41 Aligned_cols=98 Identities=12% Similarity=0.123 Sum_probs=54.7
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcC---C-CCCCchhhhhhhhcCCCceeEEEec--CCCCCCCcchhh
Q 045267 12 HIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIP---S-DGPPSEAQKSTLESLPSSINSVFLP--VSLNDVAEDARA 85 (482)
Q Consensus 12 ~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~ 85 (482)
-|.+++..+.|-....+.+|-.-.-+ |.+|-++-- . .+-+ ...+...+..+.|+..+ +..+......
T Consensus 30 li~V~TG~GKGKTTAAlG~alRa~Gh-G~rv~vvQFiKg~~~~GE----~~~~~~~~~~v~~~~~~~g~tw~~~~~~~-- 102 (198)
T COG2109 30 LIIVFTGNGKGKTTAALGLALRALGH-GLRVGVVQFIKGGWKYGE----EAALEKFGLGVEFHGMGEGFTWETQDREA-- 102 (198)
T ss_pred eEEEEecCCCChhHHHHHHHHHHhcC-CCEEEEEEEeecCcchhH----HHHHHhhccceeEEecCCceeCCCcCcHH--
Confidence 48888989999998888887766554 777766631 1 1111 11222223456777666 3222211111
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhhCCCccEEEeCCCCc
Q 045267 86 ETVISLTVLRSLPCLRQELTSLVAKATVAALVVDLFGT 123 (482)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~l~~~~~~~~pD~vi~D~~~~ 123 (482)
+. ..+...+... ++++++.++|+||.|-+.+
T Consensus 103 --d~----~aa~~~w~~a-~~~l~~~~ydlviLDEl~~ 133 (198)
T COG2109 103 --DI----AAAKAGWEHA-KEALADGKYDLVILDELNY 133 (198)
T ss_pred --HH----HHHHHHHHHH-HHHHhCCCCCEEEEehhhH
Confidence 11 2222233232 3445677999999998765
No 218
>PRK06904 replicative DNA helicase; Validated
Probab=55.26 E-value=75 Score=32.95 Aligned_cols=38 Identities=16% Similarity=0.178 Sum_probs=32.0
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCC
Q 045267 13 IVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDG 50 (482)
Q Consensus 13 ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~ 50 (482)
|++..-|+.|-..-++.+|...+.+.|+.|.|++.+..
T Consensus 224 iiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs 261 (472)
T PRK06904 224 IIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMP 261 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCC
Confidence 77788899999999999999876544999999998753
No 219
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=55.21 E-value=1.2e+02 Score=26.06 Aligned_cols=27 Identities=19% Similarity=0.461 Sum_probs=23.6
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCEEEEE
Q 045267 18 SPGMGHLIPLIEFAKRLVHRHHFLVTFF 45 (482)
Q Consensus 18 ~~~~GH~~P~l~La~~L~~r~GH~Vt~~ 45 (482)
.+..|-..-.+.|++.|.++ |.+|.++
T Consensus 6 ~~~~GKT~va~~L~~~l~~~-g~~V~~~ 32 (166)
T TIGR00347 6 DTGVGKTVASSALAAKLKKA-GYSVGYY 32 (166)
T ss_pred CCCccHHHHHHHHHHHHHHC-CCcEEEE
Confidence 35568899999999999887 9999997
No 220
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=55.20 E-value=62 Score=31.57 Aligned_cols=49 Identities=18% Similarity=0.104 Sum_probs=39.3
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCC--chhhhhhhh
Q 045267 12 HIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPP--SEAQKSTLE 61 (482)
Q Consensus 12 ~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~--~~~~~~~~~ 61 (482)
-|+|+..-+.|-..-.-.||+-|.+. |+.|.++..+.+.+ ..+.+...+
T Consensus 141 Vil~vGVNG~GKTTTIaKLA~~l~~~-g~~VllaA~DTFRAaAiEQL~~w~e 191 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLAKYLKQQ-GKSVLLAAGDTFRAAAIEQLEVWGE 191 (340)
T ss_pred EEEEEecCCCchHhHHHHHHHHHHHC-CCeEEEEecchHHHHHHHHHHHHHH
Confidence 57888888999999999999999988 99999999886655 234444444
No 221
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=54.94 E-value=1.4e+02 Score=25.81 Aligned_cols=99 Identities=16% Similarity=0.109 Sum_probs=55.9
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEE---cCC-CCCCchhhhhhhhcCCCceeEEEecCCCCCCCcchhhHH
Q 045267 12 HIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFF---IPS-DGPPSEAQKSTLESLPSSINSVFLPVSLNDVAEDARAET 87 (482)
Q Consensus 12 ~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 87 (482)
-|.+++.++.|-....+.+|-+.+.+ |++|.|+ -.. ..-+. ..++.++ ++.+........-.... ...
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~-g~~v~~vQFlKg~~~~gE~----~~l~~l~-~v~~~~~g~~~~~~~~~--~~~ 75 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGH-GYRVGVVQFLKGGWKYGEL----KALERLP-NIEIHRMGRGFFWTTEN--DEE 75 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEEeCCCCccCHH----HHHHhCC-CcEEEECCCCCccCCCC--hHH
Confidence 48888999999999999999999887 9999994 332 11111 1223333 46665554111000011 111
Q ss_pred HHHHHHHhhhHHHHHHHHHHhhCCCccEEEeCCCCc
Q 045267 88 VISLTVLRSLPCLRQELTSLVAKATVAALVVDLFGT 123 (482)
Q Consensus 88 ~~~~~~~~~~~~l~~~l~~~~~~~~pD~vi~D~~~~ 123 (482)
.. ... ...-+..++.+.+.++|+||.|-...
T Consensus 76 ~~----~~a-~~~~~~a~~~~~~~~~dLlVLDEi~~ 106 (159)
T cd00561 76 DI----AAA-AEGWAFAKEAIASGEYDLVILDEINY 106 (159)
T ss_pred HH----HHH-HHHHHHHHHHHhcCCCCEEEEechHh
Confidence 11 111 12222334444567999999998654
No 222
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=54.87 E-value=41 Score=30.12 Aligned_cols=33 Identities=15% Similarity=0.118 Sum_probs=23.0
Q ss_pred CCccEEEe-CCCC-ccHHHHHHHcCCccEEEccch
Q 045267 111 ATVAALVV-DLFG-TDAFDVAQEFNISPYIFYPST 143 (482)
Q Consensus 111 ~~pD~vi~-D~~~-~~~~~~A~~lgIP~v~~~~~~ 143 (482)
..||+||+ |... ..+..=|.++|||++.+.-+.
T Consensus 126 ~~Pdlviv~~~~~~~~ai~Ea~~l~IP~I~i~Dtn 160 (193)
T cd01425 126 RLPDLVIVLDPRKEHQAIREASKLGIPVIAIVDTN 160 (193)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEecCC
Confidence 57999884 4422 234567888999999876543
No 223
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=54.82 E-value=1.1e+02 Score=31.38 Aligned_cols=32 Identities=13% Similarity=0.227 Sum_probs=24.6
Q ss_pred HHHhhCCCccEEEeCCCCccHHHHHHHcCCccEEE
Q 045267 105 TSLVAKATVAALVVDLFGTDAFDVAQEFNISPYIF 139 (482)
Q Consensus 105 ~~~~~~~~pD~vi~D~~~~~~~~~A~~lgIP~v~~ 139 (482)
++++++.+||++|.+.. ...+|+++|||++.+
T Consensus 365 ~~~l~~~~~dliiG~s~---~~~~a~~~~ip~~~~ 396 (429)
T cd03466 365 ESYAKELKIDVLIGNSY---GRRIAEKLGIPLIRI 396 (429)
T ss_pred HHHHHhcCCCEEEECch---hHHHHHHcCCCEEEe
Confidence 34444569999999985 468899999998753
No 224
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=54.81 E-value=78 Score=24.11 Aligned_cols=34 Identities=12% Similarity=0.254 Sum_probs=22.7
Q ss_pred HHHHhhCCCccEEEeCCCC---------ccHHHHHHHcCCccE
Q 045267 104 LTSLVAKATVAALVVDLFG---------TDAFDVAQEFNISPY 137 (482)
Q Consensus 104 l~~~~~~~~pD~vi~D~~~---------~~~~~~A~~lgIP~v 137 (482)
+.++++..+.|+||..... +.-..+|...+||++
T Consensus 47 i~~~i~~g~id~VIn~~~~~~~~~~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 47 ILDLIKNGEIDLVINTLYPLGAQPHEDGKALRRAAENIDIPGA 89 (90)
T ss_pred HHHHhcCCCeEEEEECCCcCcceeccCcHHHHHHHHHcCCCee
Confidence 3455567899999975421 122357888999965
No 225
>PRK05406 LamB/YcsF family protein; Provisional
Probab=54.80 E-value=39 Score=31.42 Aligned_cols=109 Identities=14% Similarity=0.092 Sum_probs=62.2
Q ss_pred EcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCCchhhhhhhhcCCCceeEEEecCCCCCCCcchh-hHHHHH----
Q 045267 16 LPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPPSEAQKSTLESLPSSINSVFLPVSLNDVAEDAR-AETVIS---- 90 (482)
Q Consensus 16 ~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~---- 90 (482)
.+.+..|+-.-|....+ |+. -|.|.+..++.+.+... |.-..++.+..++..... ....+.
T Consensus 35 ACG~HAGDp~~M~~tv~-lA~--~~gV~IGAHPgypD~~g-----------FGRR~m~~s~~el~~~v~yQigAL~~~a~ 100 (246)
T PRK05406 35 ACGFHAGDPAVMRRTVR-LAK--ENGVAIGAHPGYPDLEG-----------FGRRNMDLSPEELYALVLYQIGALQAIAR 100 (246)
T ss_pred hccccCCCHHHHHHHHH-HHH--HcCCeEccCCCCCccCC-----------CCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45566677777776665 433 47899999998877432 322222222121111100 001111
Q ss_pred ---------------HHHHhhhHHHHHHHHHHhhCCCccEEEeCCCCccHHHHHHHcCCccEE
Q 045267 91 ---------------LTVLRSLPCLRQELTSLVAKATVAALVVDLFGTDAFDVAQEFNISPYI 138 (482)
Q Consensus 91 ---------------~~~~~~~~~l~~~l~~~~~~~~pD~vi~D~~~~~~~~~A~~lgIP~v~ 138 (482)
.......+.+...+-+.+++..|++++.-........+|++.|+|++.
T Consensus 101 ~~g~~l~hVKPHGALYN~~~~d~~~a~av~~ai~~~~~~l~l~~~~~s~~~~~A~~~Gl~~~~ 163 (246)
T PRK05406 101 AAGGRVSHVKPHGALYNMAAKDPALADAVAEAVAAVDPSLILVGLAGSELIRAAEEAGLRTAS 163 (246)
T ss_pred HcCCeeEEeCccHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEecCChHHHHHHHHcCCcEEE
Confidence 111223456666666666677899988876555566899999999764
No 226
>COG2120 Uncharacterized proteins, LmbE homologs [Function unknown]
Probab=54.23 E-value=18 Score=33.73 Aligned_cols=40 Identities=13% Similarity=-0.040 Sum_probs=23.1
Q ss_pred hccCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcC
Q 045267 7 AQAAPHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIP 47 (482)
Q Consensus 7 ~~~~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~ 47 (482)
.+..++|+++.--.--=..-+-.....|.++ ||+|++++-
T Consensus 7 ~~~~~~vL~v~aHPDDe~~g~ggtla~~~~~-G~~V~v~~l 46 (237)
T COG2120 7 MLDPLRVLVVFAHPDDEEIGCGGTLAKLAAR-GVEVTVVCL 46 (237)
T ss_pred cccCCcEEEEecCCcchhhccHHHHHHHHHC-CCeEEEEEc
Confidence 4445556555432222223344555556688 999999983
No 227
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=54.09 E-value=15 Score=32.59 Aligned_cols=33 Identities=18% Similarity=0.208 Sum_probs=22.5
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCC
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPS 48 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~ 48 (482)
|||.++. +.|++-- .|+++..+| ||+||-++..
T Consensus 1 mKIaiIg--AsG~~Gs--~i~~EA~~R-GHeVTAivRn 33 (211)
T COG2910 1 MKIAIIG--ASGKAGS--RILKEALKR-GHEVTAIVRN 33 (211)
T ss_pred CeEEEEe--cCchhHH--HHHHHHHhC-CCeeEEEEeC
Confidence 4576664 4444432 467788788 9999999854
No 228
>PRK08506 replicative DNA helicase; Provisional
Probab=53.82 E-value=22 Score=36.88 Aligned_cols=38 Identities=21% Similarity=0.304 Sum_probs=32.7
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCC
Q 045267 12 HIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDG 50 (482)
Q Consensus 12 ~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~ 50 (482)
-|++...|+.|-..=.+.+|....+. |+.|.|++.+..
T Consensus 194 LivIaarpg~GKT~fal~ia~~~~~~-g~~V~~fSlEMs 231 (472)
T PRK08506 194 LIIIAARPSMGKTTLCLNMALKALNQ-DKGVAFFSLEMP 231 (472)
T ss_pred eEEEEcCCCCChHHHHHHHHHHHHhc-CCcEEEEeCcCC
Confidence 37778888999999999999998776 999999988753
No 229
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=53.82 E-value=1.6e+02 Score=26.22 Aligned_cols=34 Identities=21% Similarity=0.182 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHhcCCC--EEEEEcCC
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRLVHRHHF--LVTFFIPS 48 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L~~r~GH--~Vt~~~~~ 48 (482)
|||+++.++..+-+. +|.+.+.+. ++ +|.++.+.
T Consensus 1 ~riail~sg~gs~~~---~ll~~~~~~-~l~~~I~~vi~~ 36 (190)
T TIGR00639 1 KRIVVLISGNGSNLQ---AIIDACKEG-KIPASVVLVISN 36 (190)
T ss_pred CeEEEEEcCCChhHH---HHHHHHHcC-CCCceEEEEEEC
Confidence 468888887766555 455556443 44 67765444
No 230
>PRK12569 hypothetical protein; Provisional
Probab=53.79 E-value=36 Score=31.61 Aligned_cols=109 Identities=10% Similarity=-0.026 Sum_probs=62.0
Q ss_pred EcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCCchhhhhhhhcCCCceeEEEecCCCCCCCcchh-hHHHHH----
Q 045267 16 LPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPPSEAQKSTLESLPSSINSVFLPVSLNDVAEDAR-AETVIS---- 90 (482)
Q Consensus 16 ~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~---- 90 (482)
.+.+..|+-.-|..-.+ |++ -|.|.+..++.+.+.. ||.-..++.+.+++..... ....+.
T Consensus 38 ACG~HAGDp~~M~~tv~-lA~--~~~V~IGAHPsyPD~~-----------gFGRr~m~~s~~el~~~v~yQigaL~~~~~ 103 (245)
T PRK12569 38 ATGFHAGDPNIMRRTVE-LAK--AHGVGIGAHPGFRDLV-----------GFGRRHINASPQELVNDVLYQLGALREFAR 103 (245)
T ss_pred hccccCCCHHHHHHHHH-HHH--HcCCEeccCCCCCcCC-----------CCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34555677666666555 433 4889999999887743 2332223322222111100 001110
Q ss_pred ---------------HHHHhhhHHHHHHHHHHhhCCCccEEEeCCCCccHHHHHHHcCCccEE
Q 045267 91 ---------------LTVLRSLPCLRQELTSLVAKATVAALVVDLFGTDAFDVAQEFNISPYI 138 (482)
Q Consensus 91 ---------------~~~~~~~~~l~~~l~~~~~~~~pD~vi~D~~~~~~~~~A~~lgIP~v~ 138 (482)
.......+.+...+-+.+++..|++++.-........+|++.|++++.
T Consensus 104 ~~g~~l~hVKPHGALYN~~~~d~~la~av~~ai~~~~~~l~l~~~~~s~~~~~A~~~Gl~~~~ 166 (245)
T PRK12569 104 AHGVRLQHVKPHGALYMHAARDEALARLLVEALARLDPLLILYCMDGSATERAARELGQPVVR 166 (245)
T ss_pred HcCCeeEEecCCHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEecCCcHHHHHHHHcCCCeEE
Confidence 111224556666666666777899988776555556899999999765
No 231
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=53.65 E-value=27 Score=28.14 Aligned_cols=35 Identities=26% Similarity=0.254 Sum_probs=31.6
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcC
Q 045267 12 HIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIP 47 (482)
Q Consensus 12 ~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~ 47 (482)
|+++.+.+..-|-.-+..|+..|.++ ||+|.++-.
T Consensus 2 ~v~~~~~~~~~~~lGl~~la~~l~~~-G~~v~~~d~ 36 (121)
T PF02310_consen 2 RVVLACVPGEVHPLGLLYLAAYLRKA-GHEVDILDA 36 (121)
T ss_dssp EEEEEEBTTSSTSHHHHHHHHHHHHT-TBEEEEEES
T ss_pred EEEEEeeCCcchhHHHHHHHHHHHHC-CCeEEEECC
Confidence 58899999999999999999999877 999999843
No 232
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=53.32 E-value=31 Score=35.39 Aligned_cols=80 Identities=11% Similarity=0.084 Sum_probs=55.5
Q ss_pred CCe-eeccccc--hhhhhhcccccccccccC--chhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCCCCc
Q 045267 342 RGM-LVPSWAP--QAQVLSHGSTGGFLCHCG--WNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENGI 416 (482)
Q Consensus 342 ~~v-~~~~~ip--q~~lL~~~~~~~~I~HGG--~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~ 416 (482)
.|+ ...++.+ -.+++..|++=+-|+||. ..++.||+.+|+|++..=...... .+.. - |.....
T Consensus 328 ~nvvly~~~~~~~l~~ly~~~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~----~~i~-~--g~l~~~----- 395 (438)
T TIGR02919 328 DNVKLYPNITTQKIQELYQTCDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNR----DFIA-S--ENIFEH----- 395 (438)
T ss_pred CCcEEECCcChHHHHHHHHhccEEEEccccccHHHHHHHHHHcCCcEEEEecccCCc----cccc-C--CceecC-----
Confidence 455 4566677 367999999888888876 569999999999999875321111 1111 1 222222
Q ss_pred cCHHHHHHHHHHHhcCC
Q 045267 417 VGRDEIAKVVKALMEGE 433 (482)
Q Consensus 417 ~~~~~l~~ai~~vl~~~ 433 (482)
-+.+++.++|.++|+++
T Consensus 396 ~~~~~m~~~i~~lL~d~ 412 (438)
T TIGR02919 396 NEVDQLISKLKDLLNDP 412 (438)
T ss_pred CCHHHHHHHHHHHhcCH
Confidence 36899999999999987
No 233
>PRK12342 hypothetical protein; Provisional
Probab=53.24 E-value=21 Score=33.50 Aligned_cols=102 Identities=12% Similarity=0.082 Sum_probs=54.0
Q ss_pred CChHH----HHHHHHHHHhcCCCEEEEEcCCCCCCchhhhhh-hhcCCCceeE-EEec-CCCCCCCcchhhHHHHHHHHH
Q 045267 22 GHLIP----LIEFAKRLVHRHHFLVTFFIPSDGPPSEAQKST-LESLPSSINS-VFLP-VSLNDVAEDARAETVISLTVL 94 (482)
Q Consensus 22 GH~~P----~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~l~-~~~~~~~~~~~~~~~~~~~~~ 94 (482)
.-+|| .+..|-.|++ +|.+|+.++-.+...... .+ -+.+.-|.+- +-+. -... +.+ . .
T Consensus 31 ~~iNp~D~~AlE~AlrLk~-~g~~Vtvls~Gp~~a~~~--~l~r~alamGaD~avli~d~~~~----g~D-------~-~ 95 (254)
T PRK12342 31 AKISQFDLNAIEAASQLAT-DGDEIAALTVGGSLLQNS--KVRKDVLSRGPHSLYLVQDAQLE----HAL-------P-L 95 (254)
T ss_pred ccCChhhHHHHHHHHHHhh-cCCEEEEEEeCCChHhHH--HHHHHHHHcCCCEEEEEecCccC----CCC-------H-H
Confidence 34566 4777888874 599999999554332101 11 1122222221 1111 1111 111 0 1
Q ss_pred hhhHHHHHHHHHHhhCCCccEEEeCCCCcc------HHHHHHHcCCccEEEccc
Q 045267 95 RSLPCLRQELTSLVAKATVAALVVDLFGTD------AFDVAQEFNISPYIFYPS 142 (482)
Q Consensus 95 ~~~~~l~~~l~~~~~~~~pD~vi~D~~~~~------~~~~A~~lgIP~v~~~~~ 142 (482)
.....+...++. ..||+|++...+.. +..+|+.||+|++.+...
T Consensus 96 ata~~La~~i~~----~~~DLVl~G~~s~D~~tgqvg~~lA~~Lg~P~vt~v~~ 145 (254)
T PRK12342 96 DTAKALAAAIEK----IGFDLLLFGEGSGDLYAQQVGLLLGELLQLPVINAVSK 145 (254)
T ss_pred HHHHHHHHHHHH----hCCCEEEEcCCcccCCCCCHHHHHHHHhCCCcEeeEEE
Confidence 122344444443 36999997655443 458999999999886553
No 234
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=53.19 E-value=20 Score=34.54 Aligned_cols=56 Identities=11% Similarity=0.097 Sum_probs=40.5
Q ss_pred hhhcccccccccccCchhHHHHhh----cCCcEeeccccccchhhHHHHHhhcceeeeeccCCCCccCHHHHHHHHHHHh
Q 045267 355 VLSHGSTGGFLCHCGWNSVLESVV----NGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENGIVGRDEIAKVVKALM 430 (482)
Q Consensus 355 lL~~~~~~~~I~HGG~gs~~eal~----~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~vl 430 (482)
+...++ ++|+=||-||+..++. +++|++.+- .|..--..+ ++++++.+++++++
T Consensus 60 ~~~~~d--~vi~lGGDGT~L~aa~~~~~~~~Pilgin-----------------~G~lGFl~~---~~~~~~~~~l~~i~ 117 (292)
T PRK03378 60 IGQQAD--LAIVVGGDGNMLGAARVLARYDIKVIGIN-----------------RGNLGFLTD---LDPDNALQQLSDVL 117 (292)
T ss_pred cCCCCC--EEEEECCcHHHHHHHHHhcCCCCeEEEEE-----------------CCCCCcccc---cCHHHHHHHHHHHH
Confidence 334567 9999999999999974 367877763 333222333 77899999999998
Q ss_pred cC
Q 045267 431 EG 432 (482)
Q Consensus 431 ~~ 432 (482)
++
T Consensus 118 ~g 119 (292)
T PRK03378 118 EG 119 (292)
T ss_pred cC
Confidence 76
No 235
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=52.99 E-value=96 Score=26.25 Aligned_cols=27 Identities=19% Similarity=0.335 Sum_probs=21.6
Q ss_pred cccccccCch------hHHHHhhcCCcEeeccc
Q 045267 362 GGFLCHCGWN------SVLESVVNGVPLIAWPL 388 (482)
Q Consensus 362 ~~~I~HGG~g------s~~eal~~GvP~v~~P~ 388 (482)
+++++|.|-| .+.+|...++|+|++.-
T Consensus 61 ~v~~~~~gpG~~n~~~~l~~A~~~~~Pll~i~~ 93 (155)
T cd07035 61 GVVLVTSGPGLTNAVTGLANAYLDSIPLLVITG 93 (155)
T ss_pred EEEEEcCCCcHHHHHHHHHHHHhhCCCEEEEeC
Confidence 3888886644 77889999999999863
No 236
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=52.85 E-value=1e+02 Score=29.97 Aligned_cols=102 Identities=14% Similarity=0.181 Sum_probs=61.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhcC-CCEEEEEcCCCCCCchhhhhhhhcCCCcee-EEEecCCCCCCCcchhhHHHH
Q 045267 12 HIVLLPSPGMGHLIPLIEFAKRLVHRH-HFLVTFFIPSDGPPSEAQKSTLESLPSSIN-SVFLPVSLNDVAEDARAETVI 89 (482)
Q Consensus 12 ~ili~~~~~~GH~~P~l~La~~L~~r~-GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~ 89 (482)
||+|+-....|++.=..++.++|++.+ +.+|+|++.+. .+.+++..+. ++ +...+.. .+. ..+
T Consensus 1 rILii~~~~iGD~i~~~p~l~~Lk~~~P~a~I~~l~~~~------~~~l~~~~p~-id~v~~~~~~-----~~~---~~~ 65 (334)
T TIGR02195 1 KILVIGPSWVGDMVMAQSLYRLLKKRYPQAVIDVLAPAW------CRPLLERMPE-IRQAIDMPLG-----HGA---LEL 65 (334)
T ss_pred CEEEEccchhHHHHHHHHHHHHHHHHCCCCEEEEEechh------hHHHHhcCch-hceeeecCCc-----ccc---hhh
Confidence 489999999999999999999998765 78999999763 3334443332 22 1111111 000 001
Q ss_pred HHHHHhhhHHHHHHHHHHhhCCCccEEEeCCCCccHHHHHHHcCCccE
Q 045267 90 SLTVLRSLPCLRQELTSLVAKATVAALVVDLFGTDAFDVAQEFNISPY 137 (482)
Q Consensus 90 ~~~~~~~~~~l~~~l~~~~~~~~pD~vi~D~~~~~~~~~A~~lgIP~v 137 (482)
. ....+... ++..++|++|.-....-...++...|+|.-
T Consensus 66 ~-----~~~~~~~~----lr~~~yD~vi~l~~~~~s~ll~~~~~~~~r 104 (334)
T TIGR02195 66 T-----ERRRLGRS----LREERYDQAIVLPNSLKSALIPFFAGIPHR 104 (334)
T ss_pred h-----HHHHHHHH----HhhcCCCEEEECCCCHHHHHHHHHcCCCce
Confidence 0 00122222 345599999976555555667777788854
No 237
>PRK00784 cobyric acid synthase; Provisional
Probab=52.69 E-value=1.6e+02 Score=30.71 Aligned_cols=35 Identities=14% Similarity=0.242 Sum_probs=28.6
Q ss_pred EEEEEcCCC-CCChHHHHHHHHHHHhcCCCEEEEEcC
Q 045267 12 HIVLLPSPG-MGHLIPLIEFAKRLVHRHHFLVTFFIP 47 (482)
Q Consensus 12 ~ili~~~~~-~GH~~P~l~La~~L~~r~GH~Vt~~~~ 47 (482)
.|.|....+ -|-..-...|++.|+++ |++|..+=+
T Consensus 4 ~ifItGT~T~vGKT~vt~~L~~~l~~~-G~~v~~~Kp 39 (488)
T PRK00784 4 ALMVQGTASDAGKSTLVAGLCRILARR-GYRVAPFKA 39 (488)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHHHHHC-CCeEecccc
Confidence 466665555 49999999999999888 999998854
No 238
>PRK07004 replicative DNA helicase; Provisional
Probab=52.62 E-value=68 Score=33.15 Aligned_cols=39 Identities=15% Similarity=0.164 Sum_probs=32.4
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCC
Q 045267 13 IVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGP 51 (482)
Q Consensus 13 ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~ 51 (482)
|++..-|+.|-..-.+.+|..++.++|+.|.|++-+-..
T Consensus 216 iviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~ 254 (460)
T PRK07004 216 IIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPG 254 (460)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCH
Confidence 777888999999999999998765459999999877533
No 239
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=52.33 E-value=18 Score=32.47 Aligned_cols=39 Identities=13% Similarity=-0.012 Sum_probs=30.4
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCC
Q 045267 10 APHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSD 49 (482)
Q Consensus 10 ~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~ 49 (482)
.++|++.-.|+.|=+.-...|++.|.++ ||+|.++.++.
T Consensus 5 ~k~IllgVTGsiaa~k~a~~lir~L~k~-G~~V~vv~T~a 43 (196)
T PRK08305 5 GKRIGFGLTGSHCTYDEVMPEIEKLVDE-GAEVTPIVSYT 43 (196)
T ss_pred CCEEEEEEcCHHHHHHHHHHHHHHHHhC-cCEEEEEECHh
Confidence 4577777767666555479999999887 99999998763
No 240
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=52.33 E-value=19 Score=34.72 Aligned_cols=54 Identities=15% Similarity=0.138 Sum_probs=40.3
Q ss_pred hcccccccccccCchhHHHHhh----cCCcEeeccccccchhhHHHHHhhcceeeeeccCCCCccCHHHHHHHHHHHhcC
Q 045267 357 SHGSTGGFLCHCGWNSVLESVV----NGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENGIVGRDEIAKVVKALMEG 432 (482)
Q Consensus 357 ~~~~~~~~I~HGG~gs~~eal~----~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~vl~~ 432 (482)
..++ ++|+=||-||+..|.. .++|++.+- .|...-..+ ++++++.+++.+++++
T Consensus 67 ~~~D--~vi~lGGDGT~L~aa~~~~~~~~PilGIN-----------------~G~lGFL~~---~~~~~~~~~l~~i~~g 124 (296)
T PRK04539 67 QYCD--LVAVLGGDGTFLSVAREIAPRAVPIIGIN-----------------QGHLGFLTQ---IPREYMTDKLLPVLEG 124 (296)
T ss_pred cCCC--EEEEECCcHHHHHHHHHhcccCCCEEEEe-----------------cCCCeEeec---cCHHHHHHHHHHHHcC
Confidence 3577 9999999999999964 478988873 232222233 7789999999999876
No 241
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=52.06 E-value=1e+02 Score=31.36 Aligned_cols=59 Identities=19% Similarity=0.122 Sum_probs=44.7
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCC--chhhhhhhhcCCCceeEEEe
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPP--SEAQKSTLESLPSSINSVFL 72 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l 72 (482)
..|+++..-+.|-..-.-.||+-|.++ |+.|.+++.+.+.+ ..+.+.+...+ ++.|...
T Consensus 101 ~vImmvGLQGsGKTTt~~KLA~~lkk~-~~kvllVaaD~~RpAA~eQL~~La~q~--~v~~f~~ 161 (451)
T COG0541 101 TVILMVGLQGSGKTTTAGKLAKYLKKK-GKKVLLVAADTYRPAAIEQLKQLAEQV--GVPFFGS 161 (451)
T ss_pred eEEEEEeccCCChHhHHHHHHHHHHHc-CCceEEEecccCChHHHHHHHHHHHHc--CCceecC
Confidence 457777777889999999999999886 99999999988877 34555555533 4444333
No 242
>PF00731 AIRC: AIR carboxylase; InterPro: IPR000031 Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. PurK, N5-carboxyaminoimidazole ribonucleotide (N5_CAIR) synthetase, catalyzes the conversion of 5-aminoimidazole ribonucleotide (AIR), ATP, and bicarbonate to N5-CAIR, ADP, and Pi. PurE converts N5-CAIR to CAIR, the sixth step of de novo purine biosynthesis. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. Some members of this family contain two copies of this domain []. The crystal structure of PurE indicates a unique quaternary structure that confirms the octameric nature of the enzyme [].; GO: 0004638 phosphoribosylaminoimidazole carboxylase activity, 0006189 'de novo' IMP biosynthetic process; PDB: 3TRH_O 2YWX_A 2NSL_A 1D7A_A 2NSJ_A 1QCZ_A 2ATE_A 2NSH_A 3RG8_C 3RGG_D ....
Probab=51.87 E-value=97 Score=26.52 Aligned_cols=139 Identities=17% Similarity=0.192 Sum_probs=70.0
Q ss_pred EEEEeccCCCCCCHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCcccccCCCCCCCCCCchhHHhhhcCCCeeeccccch
Q 045267 273 VLFVSFGSGGTLSCEQLNELALGLEMSEQRFLWVVRSPNNAANSTFFSVNSHKDPYDFLPKGFLDRTKGRGMLVPSWAPQ 352 (482)
Q Consensus 273 ~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~ipq 352 (482)
.|-|=+|| ..+....+++...|+.++..+-..+.+... .|+.+. .++..
T Consensus 2 ~V~Ii~gs--~SD~~~~~~a~~~L~~~gi~~~~~V~saHR------------------~p~~l~-----------~~~~~ 50 (150)
T PF00731_consen 2 KVAIIMGS--TSDLPIAEEAAKTLEEFGIPYEVRVASAHR------------------TPERLL-----------EFVKE 50 (150)
T ss_dssp EEEEEESS--GGGHHHHHHHHHHHHHTT-EEEEEE--TTT------------------SHHHHH-----------HHHHH
T ss_pred eEEEEeCC--HHHHHHHHHHHHHHHHcCCCEEEEEEeccC------------------CHHHHH-----------HHHHH
Confidence 45555665 346777888999999988665444433211 233222 22221
Q ss_pred hhhhhcccccccccccCch----hHHHHhhcCCcEeeccccccchh----hHHHHHhhcceeeeeccCCCCccCHHHHHH
Q 045267 353 AQVLSHGSTGGFLCHCGWN----SVLESVVNGVPLIAWPLYAEQKM----NAVILTEDVKLALRPKANENGIVGRDEIAK 424 (482)
Q Consensus 353 ~~lL~~~~~~~~I~HGG~g----s~~eal~~GvP~v~~P~~~DQ~~----na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ 424 (482)
.+- ..++ +||.=.|.. ++.-++. -.|+|.+|....+.. ....++--.|+++-.-.-+ +..+...++.
T Consensus 51 ~~~-~~~~--viIa~AG~~a~Lpgvva~~t-~~PVIgvP~~~~~~~g~d~l~S~vqMp~g~pvatv~i~-~~~nAA~~A~ 125 (150)
T PF00731_consen 51 YEA-RGAD--VIIAVAGMSAALPGVVASLT-TLPVIGVPVSSGYLGGLDSLLSIVQMPSGVPVATVGIN-NGFNAALLAA 125 (150)
T ss_dssp TTT-TTES--EEEEEEESS--HHHHHHHHS-SS-EEEEEE-STTTTTHHHHHHHHT--TTS--EE-SST-HHHHHHHHHH
T ss_pred hcc-CCCE--EEEEECCCcccchhhheecc-CCCEEEeecCcccccCcccHHHHHhccCCCCceEEEcc-CchHHHHHHH
Confidence 111 2234 777666654 3333333 789999998766442 2222222135553321100 1145555655
Q ss_pred HHHHHhcCCchHHHHHHHHHHHHHHHH
Q 045267 425 VVKALMEGEQGKEVRNKMKDLKDAAAA 451 (482)
Q Consensus 425 ai~~vl~~~~~~~~r~~a~~l~~~~~~ 451 (482)
.|-.+ .|+ +++++.+..++++++
T Consensus 126 ~ILa~-~d~---~l~~kl~~~~~~~~~ 148 (150)
T PF00731_consen 126 RILAL-KDP---ELREKLRAYREKMKE 148 (150)
T ss_dssp HHHHT-T-H---HHHHHHHHHHHHHHH
T ss_pred HHHhc-CCH---HHHHHHHHHHHHHHc
Confidence 55433 455 888888888888875
No 243
>PRK06749 replicative DNA helicase; Provisional
Probab=51.55 E-value=65 Score=32.95 Aligned_cols=37 Identities=19% Similarity=0.187 Sum_probs=32.7
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCC
Q 045267 13 IVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDG 50 (482)
Q Consensus 13 ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~ 50 (482)
|++-.-|+.|-..-.+.+|...+++ |+.|.|++.+-.
T Consensus 189 iiIaarPgmGKTafal~ia~~~a~~-g~~v~~fSlEMs 225 (428)
T PRK06749 189 VVLGARPSMGKTAFALNVGLHAAKS-GAAVGLFSLEMS 225 (428)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHhc-CCCEEEEEeeCC
Confidence 7778889999999999999999876 999999987753
No 244
>PLN02929 NADH kinase
Probab=51.32 E-value=16 Score=35.24 Aligned_cols=66 Identities=8% Similarity=0.088 Sum_probs=41.8
Q ss_pred hcccccccccccCchhHHHHhh---cCCcEeecccccc------chhhHHHHHhhcceeeeeccCCCCccCHHHHHHHHH
Q 045267 357 SHGSTGGFLCHCGWNSVLESVV---NGVPLIAWPLYAE------QKMNAVILTEDVKLALRPKANENGIVGRDEIAKVVK 427 (482)
Q Consensus 357 ~~~~~~~~I~HGG~gs~~eal~---~GvP~v~~P~~~D------Q~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~ 427 (482)
..++ ++|+-||-||+..|.. .++|++.+=..-. ++.+.-. +. ..+|.-.. ++.+++.+++.
T Consensus 63 ~~~D--lvi~lGGDGT~L~aa~~~~~~iPvlGIN~Gp~~~~~~~~~~~~~~-~~-r~lGfL~~------~~~~~~~~~L~ 132 (301)
T PLN02929 63 RDVD--LVVAVGGDGTLLQASHFLDDSIPVLGVNSDPTQKDEVEEYSDEFD-AR-RSTGHLCA------ATAEDFEQVLD 132 (301)
T ss_pred CCCC--EEEEECCcHHHHHHHHHcCCCCcEEEEECCCcccccccccccccc-cc-cCcccccc------CCHHHHHHHHH
Confidence 3456 9999999999999854 4789888754311 1111110 11 12333222 66799999999
Q ss_pred HHhcC
Q 045267 428 ALMEG 432 (482)
Q Consensus 428 ~vl~~ 432 (482)
+++++
T Consensus 133 ~il~g 137 (301)
T PLN02929 133 DVLFG 137 (301)
T ss_pred HHHcC
Confidence 99976
No 245
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=51.17 E-value=21 Score=34.59 Aligned_cols=55 Identities=15% Similarity=0.179 Sum_probs=40.6
Q ss_pred hhcccccccccccCchhHHHHhh----cCCcEeeccccccchhhHHHHHhhcceeeeeccCCCCccCHHHHHHHHHHHhc
Q 045267 356 LSHGSTGGFLCHCGWNSVLESVV----NGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENGIVGRDEIAKVVKALME 431 (482)
Q Consensus 356 L~~~~~~~~I~HGG~gs~~eal~----~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~vl~ 431 (482)
...++ ++|+=||-||+..|.. .++|++.+.. |..--..+ +.++++.+++.++++
T Consensus 70 ~~~~D--~vi~lGGDGT~L~aar~~~~~~~PilGIN~-----------------G~lGFL~~---~~~~~~~~~l~~i~~ 127 (306)
T PRK03372 70 ADGCE--LVLVLGGDGTILRAAELARAADVPVLGVNL-----------------GHVGFLAE---AEAEDLDEAVERVVD 127 (306)
T ss_pred ccCCC--EEEEEcCCHHHHHHHHHhccCCCcEEEEec-----------------CCCceecc---CCHHHHHHHHHHHHc
Confidence 34567 9999999999999865 3789888743 32222233 677899999999987
Q ss_pred C
Q 045267 432 G 432 (482)
Q Consensus 432 ~ 432 (482)
+
T Consensus 128 g 128 (306)
T PRK03372 128 R 128 (306)
T ss_pred C
Confidence 6
No 246
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=50.64 E-value=28 Score=32.80 Aligned_cols=104 Identities=14% Similarity=0.086 Sum_probs=55.2
Q ss_pred CChHH----HHHHHHHHHhcCC-CEEEEEcCCCCCCchhhhhhhhcCCCceeE-EEec-CCCCCCCcchhhHHHHHHHHH
Q 045267 22 GHLIP----LIEFAKRLVHRHH-FLVTFFIPSDGPPSEAQKSTLESLPSSINS-VFLP-VSLNDVAEDARAETVISLTVL 94 (482)
Q Consensus 22 GH~~P----~l~La~~L~~r~G-H~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~-~~~~~~~~~~~~~~~~~~~~~ 94 (482)
.-+|| .+..|-.|++++| .+||.+|-.+.... ....+-..+.-|.+- +-+. -...+ .+ . .
T Consensus 32 ~~iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a~-~~~~lr~aLAmGaD~avli~d~~~~g----~D-------~-~ 98 (256)
T PRK03359 32 AKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALT-NAKGRKDVLSRGPDELIVVIDDQFEQ----AL-------P-Q 98 (256)
T ss_pred cccChhhHHHHHHHHHHhhhcCCCEEEEEEECCcchh-hHHHHHHHHHcCCCEEEEEecCcccC----cC-------H-H
Confidence 34566 5777888888744 79999995543211 001122222323321 1111 11111 11 0 1
Q ss_pred hhhHHHHHHHHHHhhCCCccEEEeCCCCcc------HHHHHHHcCCccEEEccc
Q 045267 95 RSLPCLRQELTSLVAKATVAALVVDLFGTD------AFDVAQEFNISPYIFYPS 142 (482)
Q Consensus 95 ~~~~~l~~~l~~~~~~~~pD~vi~D~~~~~------~~~~A~~lgIP~v~~~~~ 142 (482)
.....+...+++ ..||+||+...+.. +..+|+.||+|++.+...
T Consensus 99 ~tA~~La~ai~~----~~~DLVl~G~~s~D~~tgqvg~~lAe~Lg~P~vt~v~~ 148 (256)
T PRK03359 99 QTASALAAAAQK----AGFDLILCGDGSSDLYAQQVGLLVGEILNIPAINGVSK 148 (256)
T ss_pred HHHHHHHHHHHH----hCCCEEEEcCccccCCCCcHHHHHHHHhCCCceeeEEE
Confidence 122334444443 37999997654433 457999999998886553
No 247
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=50.18 E-value=82 Score=30.79 Aligned_cols=33 Identities=18% Similarity=0.099 Sum_probs=23.2
Q ss_pred CCccEEE-eCCCC-ccHHHHHHHcCCccEEEccch
Q 045267 111 ATVAALV-VDLFG-TDAFDVAQEFNISPYIFYPST 143 (482)
Q Consensus 111 ~~pD~vi-~D~~~-~~~~~~A~~lgIP~v~~~~~~ 143 (482)
..||+|| .|... ..+..=|.++|||+|.+.-+.
T Consensus 151 ~~Pd~viv~d~~~e~~AI~EA~kl~IPvIaivDTn 185 (326)
T PRK12311 151 GLPDLLFVIDTNKEDIAIQEAQRLGIPVAAIVDTN 185 (326)
T ss_pred cCCCEEEEeCCccchHHHHHHHHcCCCEEEEeeCC
Confidence 3799887 45433 335677899999999876543
No 248
>PF03746 LamB_YcsF: LamB/YcsF family; InterPro: IPR005501 This entry represents the uncharacterised protein family UPF0271, including LamB. The lam locus of Emericella nidulans (Aspergillus nidulans) consists of two divergently transcribed genes, lamA and lamB, involved in the utilization of lactams such as 2-pyrrolidinone. Both genes are under the control of the positive regulatory gene amdR and are subject to carbon and nitrogen metabolite repression []. The exact molecular function of the proteins in this family is unknown.; PDB: 1V6T_A 1XW8_A 2XU2_A 2DFA_A.
Probab=50.01 E-value=24 Score=32.78 Aligned_cols=111 Identities=10% Similarity=0.053 Sum_probs=52.8
Q ss_pred EEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCCchhhhhhhhcCCCceeEEEecCCCCCCCcch-hhHHHHH--
Q 045267 14 VLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPPSEAQKSTLESLPSSINSVFLPVSLNDVAEDA-RAETVIS-- 90 (482)
Q Consensus 14 li~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~-- 90 (482)
=|.+.+..|+-.-|....+ |+++ |.|.+..++.+.+...+++ ..+.++..++.... .....+.
T Consensus 31 NIACG~HAGDp~~M~~tv~-lA~~--~gV~iGAHPsyPD~~gFGR-----------r~m~~s~~el~~~v~yQigaL~~~ 96 (242)
T PF03746_consen 31 NIACGFHAGDPETMRRTVR-LAKE--HGVAIGAHPSYPDREGFGR-----------RSMDISPEELRDSVLYQIGALQAI 96 (242)
T ss_dssp EEE-SSSS--HHHHHHHHH-HHHH--TT-EEEEE---S-TTTTT------------S-----HHHHHHHHHHHHHHHHHH
T ss_pred HHhhcccccCHHHHHHHHH-HHHH--cCCEeccCCCCCCCCCCCC-----------CCCCCCHHHHHHHHHHHHHHHHHH
Confidence 3567777888888887776 3343 6788999998877433222 11221111111000 0001010
Q ss_pred -----------------HHHHhhhHHHHHHHHHHhhCCCccEEEeCCCCccHHHHHHHcCCccEE
Q 045267 91 -----------------LTVLRSLPCLRQELTSLVAKATVAALVVDLFGTDAFDVAQEFNISPYI 138 (482)
Q Consensus 91 -----------------~~~~~~~~~l~~~l~~~~~~~~pD~vi~D~~~~~~~~~A~~lgIP~v~ 138 (482)
.......+.+.+.+.+.++...|++.|.-........+|+++|+|++.
T Consensus 97 a~~~g~~l~hVKPHGALYn~~~~d~~lA~~i~~ai~~~~~~l~l~~~ags~~~~~A~~~Gl~~~~ 161 (242)
T PF03746_consen 97 AAAEGVPLHHVKPHGALYNMAAKDEELARAIAEAIKAFDPDLPLYGLAGSELEKAAKELGLPVVF 161 (242)
T ss_dssp HHHTT--EEEE---HHHHHHHHH-HHHHHHHHHHHHHH-TT-EEEEETTSHHHHHHHHCT--EEE
T ss_pred HHHcCCeeEEecccHHHHHHHhcCHHHHHHHHHHHHHhCCCcEEEEcCCcHHHHHHHHCCCcEEE
Confidence 111224556666666667777999998877665567899999999775
No 249
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=49.94 E-value=73 Score=28.32 Aligned_cols=100 Identities=14% Similarity=0.156 Sum_probs=44.2
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhcC-CCEEEEEcCCCCCCchhhhhhhhcCCCceeEEEecCCCCCCCcchhhHHHHHH
Q 045267 13 IVLLPSPGMGHLIPLIEFAKRLVHRH-HFLVTFFIPSDGPPSEAQKSTLESLPSSINSVFLPVSLNDVAEDARAETVISL 91 (482)
Q Consensus 13 ili~~~~~~GH~~P~l~La~~L~~r~-GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 91 (482)
|-|. ..+.|-++-...|+++|.+++ |++|.+-+.... ........++..+....+|.+.
T Consensus 24 iWiH-a~SvGE~~a~~~Li~~l~~~~p~~~illT~~T~t----g~~~~~~~~~~~v~~~~~P~D~--------------- 83 (186)
T PF04413_consen 24 IWIH-AASVGEVNAARPLIKRLRKQRPDLRILLTTTTPT----GREMARKLLPDRVDVQYLPLDF--------------- 83 (186)
T ss_dssp EEEE--SSHHHHHHHHHHHHHHTT---TS-EEEEES-CC----HHHHHHGG-GGG-SEEE---SS---------------
T ss_pred EEEE-ECCHHHHHHHHHHHHHHHHhCCCCeEEEEecCCc----hHHHHHHhCCCCeEEEEeCccC---------------
Confidence 4444 356799999999999997653 788887775321 1111111122233333333321
Q ss_pred HHHhhhHHHHHHHHHHhhCCCccEEEeCCCCcc-H-HHHHHHcCCccEEEcc
Q 045267 92 TVLRSLPCLRQELTSLVAKATVAALVVDLFGTD-A-FDVAQEFNISPYIFYP 141 (482)
Q Consensus 92 ~~~~~~~~l~~~l~~~~~~~~pD~vi~D~~~~~-~-~~~A~~lgIP~v~~~~ 141 (482)
....+..+. .++||++|.-..-.| . ...|++.|||++.+..
T Consensus 84 -----~~~~~rfl~----~~~P~~~i~~EtElWPnll~~a~~~~ip~~LvNa 126 (186)
T PF04413_consen 84 -----PWAVRRFLD----HWRPDLLIWVETELWPNLLREAKRRGIPVVLVNA 126 (186)
T ss_dssp -----HHHHHHHHH----HH--SEEEEES----HHHHHH-----S-EEEEEE
T ss_pred -----HHHHHHHHH----HhCCCEEEEEccccCHHHHHHHhhcCCCEEEEee
Confidence 112223344 349999885544444 3 3688889999887655
No 250
>PRK13789 phosphoribosylamine--glycine ligase; Provisional
Probab=49.76 E-value=43 Score=34.24 Aligned_cols=33 Identities=18% Similarity=0.193 Sum_probs=24.9
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCC
Q 045267 10 APHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPS 48 (482)
Q Consensus 10 ~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~ 48 (482)
+||||++..+++-| +|++.|.+. ++-..+++.+
T Consensus 4 ~~kvLviG~g~reh-----al~~~~~~~-~~~~~~~~~p 36 (426)
T PRK13789 4 KLKVLLIGSGGRES-----AIAFALRKS-NLLSELKVFP 36 (426)
T ss_pred CcEEEEECCCHHHH-----HHHHHHHhC-CCCCEEEEEC
Confidence 58999999999887 689999776 8554444433
No 251
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=49.67 E-value=1e+02 Score=30.32 Aligned_cols=31 Identities=16% Similarity=0.204 Sum_probs=21.8
Q ss_pred CCccEEEeCCCCcc----HHHHHHHcCCccEEEcc
Q 045267 111 ATVAALVVDLFGTD----AFDVAQEFNISPYIFYP 141 (482)
Q Consensus 111 ~~pD~vi~D~~~~~----~~~~A~~lgIP~v~~~~ 141 (482)
.++|.||....... ...-|...|||+|.+..
T Consensus 79 ~~vdgIiv~~~d~~al~~~l~~a~~~gIpVV~~d~ 113 (336)
T PRK15408 79 QGYNAIIVSAVSPDGLCPALKRAMQRGVKVLTWDS 113 (336)
T ss_pred cCCCEEEEecCCHHHHHHHHHHHHHCCCeEEEeCC
Confidence 48999998665433 33467788999888654
No 252
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=49.25 E-value=25 Score=33.38 Aligned_cols=53 Identities=17% Similarity=0.272 Sum_probs=39.1
Q ss_pred cccccccccccCchhHHHHhh-cCCcEeeccccccchhhHHHHHhhcceeeeeccCCCCccCHHHHHHHHHHHhcC
Q 045267 358 HGSTGGFLCHCGWNSVLESVV-NGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENGIVGRDEIAKVVKALMEG 432 (482)
Q Consensus 358 ~~~~~~~I~HGG~gs~~eal~-~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~vl~~ 432 (482)
.++ ++|+=||-||+..+.. +.+|++.+- .|...-..+ ++++++.+++++++++
T Consensus 52 ~~D--~vi~lGGDGT~L~a~~~~~~PilGIN-----------------~G~lGFL~~---~~~~~~~~~l~~i~~g 105 (271)
T PRK01185 52 NAD--VIITIGGDGTILRTLQRAKGPILGIN-----------------MGGLGFLTE---IEIDEVGSAIKKLIRG 105 (271)
T ss_pred CCC--EEEEEcCcHHHHHHHHHcCCCEEEEE-----------------CCCCccCcc---cCHHHHHHHHHHHHcC
Confidence 567 9999999999999987 456766652 232222334 7889999999999986
No 253
>PRK10867 signal recognition particle protein; Provisional
Probab=49.05 E-value=1.3e+02 Score=30.87 Aligned_cols=42 Identities=19% Similarity=0.180 Sum_probs=34.6
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCC
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPP 52 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 52 (482)
..|+++..++.|-..-...||..|.++.|+.|.+++.+.+..
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~ 142 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRP 142 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccch
Confidence 356677777889999999999999765499999999887655
No 254
>PRK07236 hypothetical protein; Provisional
Probab=48.96 E-value=15 Score=36.94 Aligned_cols=36 Identities=19% Similarity=0.174 Sum_probs=30.4
Q ss_pred hhhccCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEc
Q 045267 5 LQAQAAPHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFI 46 (482)
Q Consensus 5 ~~~~~~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~ 46 (482)
|+.|..++|+|+..|-.| +.+|..|.++ |++|+++=
T Consensus 1 ~~~~~~~~ViIVGaG~aG-----l~~A~~L~~~-G~~v~v~E 36 (386)
T PRK07236 1 MTHMSGPRAVVIGGSLGG-----LFAALLLRRA-GWDVDVFE 36 (386)
T ss_pred CCCCCCCeEEEECCCHHH-----HHHHHHHHhC-CCCEEEEe
Confidence 677888999999987555 7889999877 99999995
No 255
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=48.92 E-value=20 Score=34.07 Aligned_cols=57 Identities=12% Similarity=0.092 Sum_probs=39.5
Q ss_pred hhhhhcccccccccccCchhHHHHhh----cCCcEeeccccccchhhHHHHHhhcceeeeeccCCCCccCHHHHHHHHHH
Q 045267 353 AQVLSHGSTGGFLCHCGWNSVLESVV----NGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENGIVGRDEIAKVVKA 428 (482)
Q Consensus 353 ~~lL~~~~~~~~I~HGG~gs~~eal~----~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~ 428 (482)
.++...++ ++|+=||-||+..|.. .++|++.+-. |..--..+ ++++++.+++.+
T Consensus 37 ~~~~~~~d--~vi~iGGDGT~L~aa~~~~~~~~PilgIn~-----------------G~lGFL~~---~~~~~~~~~l~~ 94 (272)
T PRK02231 37 EEIGQRAQ--LAIVIGGDGNMLGRARVLAKYDIPLIGINR-----------------GNLGFLTD---IDPKNAYEQLEA 94 (272)
T ss_pred HHhCcCCC--EEEEECCcHHHHHHHHHhccCCCcEEEEeC-----------------CCCccccc---CCHHHHHHHHHH
Confidence 44444677 9999999999998754 3688887632 22112223 677888888888
Q ss_pred Hhc
Q 045267 429 LME 431 (482)
Q Consensus 429 vl~ 431 (482)
++.
T Consensus 95 ~~~ 97 (272)
T PRK02231 95 CLE 97 (272)
T ss_pred HHh
Confidence 887
No 256
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=48.72 E-value=2.1e+02 Score=27.15 Aligned_cols=106 Identities=17% Similarity=0.166 Sum_probs=57.9
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCCchhhhhhhhcCCCceeEEEecCCCCCCCcchhhHHHHHHH
Q 045267 13 IVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPPSEAQKSTLESLPSSINSVFLPVSLNDVAEDARAETVISLT 92 (482)
Q Consensus 13 ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 92 (482)
|+++..|+.|-..-...|.+.|.+. |.+|.++..+ ... +. ...+. ........
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~-~~~v~~i~~~------~~~--------------~~--~~~y~-~~~~Ek~~--- 56 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEK-GKEVVIISDD------SLG--------------ID--RNDYA-DSKKEKEA--- 56 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHT-T--EEEE-TH------HHH---------------T--TSSS---GGGHHHH---
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhc-CCEEEEEccc------ccc--------------cc--hhhhh-chhhhHHH---
Confidence 8899999999999999999999886 9999999633 111 11 01100 11111111
Q ss_pred HHhhhHHHHHHHHHHhhCCCccEEEeCCCCcc-HH-----HHHHHcCCccEEEccchHHHHHHHh
Q 045267 93 VLRSLPCLRQELTSLVAKATVAALVVDLFGTD-AF-----DVAQEFNISPYIFYPSTAMCLSLFL 151 (482)
Q Consensus 93 ~~~~~~~l~~~l~~~~~~~~pD~vi~D~~~~~-~~-----~~A~~lgIP~v~~~~~~~~~~~~~~ 151 (482)
-..+...+++.+. +-++||+|...+- +. .+|+..+.++..++...+...+..+
T Consensus 57 ----R~~l~s~v~r~ls--~~~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~ 115 (270)
T PF08433_consen 57 ----RGSLKSAVERALS--KDTIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQR 115 (270)
T ss_dssp ----HHHHHHHHHHHHT--T-SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHH
T ss_pred ----HHHHHHHHHHhhc--cCeEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHh
Confidence 1223344444443 2389999986643 33 6999999999988887776655544
No 257
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=48.49 E-value=1.1e+02 Score=31.16 Aligned_cols=33 Identities=6% Similarity=0.175 Sum_probs=24.1
Q ss_pred HHhhCCCccEEEeCCCCccHHHHHHHcCCccEEEcc
Q 045267 106 SLVAKATVAALVVDLFGTDAFDVAQEFNISPYIFYP 141 (482)
Q Consensus 106 ~~~~~~~pD~vi~D~~~~~~~~~A~~lgIP~v~~~~ 141 (482)
+++++.+||++|.+.. ...+|+++|+|++.+..
T Consensus 364 ~~i~~~~pdliig~~~---~~~~a~~~gip~~~~~~ 396 (430)
T cd01981 364 DMIARTEPELIFGTQM---ERHIGKRLDIPCAVISA 396 (430)
T ss_pred HHHHhhCCCEEEecch---hhHHHHHcCCCEEEEeC
Confidence 3344559999999883 45568999999876533
No 258
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=48.32 E-value=68 Score=31.43 Aligned_cols=36 Identities=19% Similarity=0.153 Sum_probs=30.6
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCC
Q 045267 13 IVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSD 49 (482)
Q Consensus 13 ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~ 49 (482)
|.=++.|++|-+--.+.|++.|.++ |++|.+++-..
T Consensus 40 VGNltvGGTGKTP~v~~L~~~L~~~-G~~~~IlSRGY 75 (326)
T PF02606_consen 40 VGNLTVGGTGKTPLVIWLARLLQAR-GYRPAILSRGY 75 (326)
T ss_pred EcccccCCCCchHHHHHHHHHHHhc-CCceEEEcCCC
Confidence 4446678999999999999999888 99999998663
No 259
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=48.24 E-value=29 Score=29.30 Aligned_cols=40 Identities=20% Similarity=0.056 Sum_probs=35.9
Q ss_pred ccCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCC
Q 045267 8 QAAPHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPS 48 (482)
Q Consensus 8 ~~~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~ 48 (482)
+++.+|++.+.+..||-.-.--+++.|+.. |.+|.....-
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~-GfeVi~~g~~ 49 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADA-GFEVINLGLF 49 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhC-CceEEecCCc
Confidence 468899999999999999999999999887 9999998754
No 260
>TIGR01283 nifE nitrogenase molybdenum-iron cofactor biosynthesis protein NifE. This protein is part of the NifEN complex involved in biosynthesis of the molybdenum-iron cofactor used by the homologous NifDK complex of nitrogenase. In a few species, the protein is found as a NifEN fusion protein.
Probab=47.91 E-value=1.3e+02 Score=30.96 Aligned_cols=29 Identities=10% Similarity=-0.027 Sum_probs=21.8
Q ss_pred hhCCCccEEEeCCCCccHHHHHHHcCCccEEE
Q 045267 108 VAKATVAALVVDLFGTDAFDVAQEFNISPYIF 139 (482)
Q Consensus 108 ~~~~~pD~vi~D~~~~~~~~~A~~lgIP~v~~ 139 (482)
++..+||++|... ....+|+++|||++.+
T Consensus 391 i~~~~pDl~ig~~---~~~~~a~k~giP~i~~ 419 (456)
T TIGR01283 391 LLEYKADLLIAGG---KERYTALKLGIPFCDI 419 (456)
T ss_pred HhhcCCCEEEEcc---chHHHHHhcCCCEEEc
Confidence 3445999999763 2567888999998764
No 261
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=47.81 E-value=46 Score=32.48 Aligned_cols=35 Identities=23% Similarity=0.149 Sum_probs=30.7
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCC
Q 045267 13 IVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPS 48 (482)
Q Consensus 13 ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~ 48 (482)
|.=++.|+.|-+--.+.||++|++| |..|-+++-.
T Consensus 52 VGNltvGGtGKTP~vi~la~~l~~r-G~~~gvvSRG 86 (336)
T COG1663 52 VGNLTVGGTGKTPVVIWLAEALQAR-GVRVGVVSRG 86 (336)
T ss_pred EccEEECCCCcCHHHHHHHHHHHhc-CCeeEEEecC
Confidence 4446779999999999999999998 9999999855
No 262
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=47.69 E-value=32 Score=34.57 Aligned_cols=48 Identities=10% Similarity=0.088 Sum_probs=33.4
Q ss_pred HHhhhHHHHHHHHHHhhCCCccEEEeCCCCccH------H----HHHHHcCCccEEEc
Q 045267 93 VLRSLPCLRQELTSLVAKATVAALVVDLFGTDA------F----DVAQEFNISPYIFY 140 (482)
Q Consensus 93 ~~~~~~~l~~~l~~~~~~~~pD~vi~D~~~~~~------~----~~A~~lgIP~v~~~ 140 (482)
+....++..+.+..++++.+||++|+.+.+.++ . .+.+++|||++.-.
T Consensus 57 f~en~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vtaM 114 (431)
T TIGR01917 57 FGENLEEAKAKVLEMIKGANPDIFIAGPAFNAGRYGMAAGAITKAVQDELGIKAFTAM 114 (431)
T ss_pred hhhCHHHHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 344455666667777888899999998865432 1 24567999988754
No 263
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=47.57 E-value=13 Score=31.94 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=26.7
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCC
Q 045267 12 HIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSD 49 (482)
Q Consensus 12 ~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~ 49 (482)
+|.++..|..|+ ++|..|.++ ||+|++.+.+.
T Consensus 1 KI~ViGaG~~G~-----AlA~~la~~-g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGT-----ALAALLADN-GHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHH-----HHHHHHHHC-TEEEEEETSCH
T ss_pred CEEEECcCHHHH-----HHHHHHHHc-CCEEEEEeccH
Confidence 478888888886 688999887 99999998763
No 264
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=47.32 E-value=33 Score=34.49 Aligned_cols=47 Identities=6% Similarity=-0.035 Sum_probs=32.7
Q ss_pred HhhhHHHHHHHHHHhhCCCccEEEeCCCCccH------H----HHHHHcCCccEEEc
Q 045267 94 LRSLPCLRQELTSLVAKATVAALVVDLFGTDA------F----DVAQEFNISPYIFY 140 (482)
Q Consensus 94 ~~~~~~l~~~l~~~~~~~~pD~vi~D~~~~~~------~----~~A~~lgIP~v~~~ 140 (482)
....++..+.+..++++.+||++|+.+.+.++ . .+.+++|||++.-.
T Consensus 58 ~en~eea~~~i~~mv~k~~pDv~iaGPaFNagrYG~acg~va~aV~e~~~IP~vt~M 114 (431)
T TIGR01918 58 GENLEEAVARVLEMLKDKEPDIFIAGPAFNAGRYGVACGEICKVVQDKLNVPAVTSM 114 (431)
T ss_pred hhCHHHHHHHHHHHHHhcCCCEEEEcCccCCccHHHHHHHHHHHHHHhhCCCeEEEe
Confidence 34455666667777888899999998865432 1 24567999988754
No 265
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=47.10 E-value=3e+02 Score=28.32 Aligned_cols=105 Identities=10% Similarity=0.078 Sum_probs=59.5
Q ss_pred EEEEcCCC-CCChHHHHHHHHHHHhcCCCEEEEEcCCC-CCCchhhhhhhhcCCCceeEEEecCCCCCCCcchhhHHHHH
Q 045267 13 IVLLPSPG-MGHLIPLIEFAKRLVHRHHFLVTFFIPSD-GPPSEAQKSTLESLPSSINSVFLPVSLNDVAEDARAETVIS 90 (482)
Q Consensus 13 ili~~~~~-~GH~~P~l~La~~L~~r~GH~Vt~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 90 (482)
|+|....+ -|-..-...|++.|+++ |++|..+=+.. +.+. . ...... +. + ...+. .
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~~-G~~V~~fK~g~d~~D~-~---~~~~~~-g~-----~--~~~ld----~----- 59 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSRR-KLRVQPFKVGPDYIDP-M---FHTQAT-GR-----P--SRNLD----S----- 59 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHC-CCceeEEccCCCCCCH-H---HHHHHh-CC-----c--hhhCC----c-----
Confidence 55554444 48899999999999888 99999996431 1110 0 000000 00 0 00000 0
Q ss_pred HHHHhhhHHHHHHHHHHhhCCCccEEEeCCC-------C-----ccHHHHHHHcCCccEEEccch
Q 045267 91 LTVLRSLPCLRQELTSLVAKATVAALVVDLF-------G-----TDAFDVAQEFNISPYIFYPST 143 (482)
Q Consensus 91 ~~~~~~~~~l~~~l~~~~~~~~pD~vi~D~~-------~-----~~~~~~A~~lgIP~v~~~~~~ 143 (482)
. ....+.+.+.+.++ ..+.|++|++.. . .....+|+.++.|++.+....
T Consensus 60 -~-~~~~~~i~~~~~~~--~~~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~ 120 (449)
T TIGR00379 60 -F-FMSEAQIQECFHRH--SKGTDYSIIEGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQ 120 (449)
T ss_pred -c-cCCHHHHHHHHHHh--cccCCEEEEecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCc
Confidence 0 01123344444443 347899997754 1 125689999999999887654
No 266
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=46.91 E-value=27 Score=36.04 Aligned_cols=53 Identities=13% Similarity=0.228 Sum_probs=39.5
Q ss_pred hcccccccccccCchhHHHHhhc----CCcEeeccccccchhhHHHHHhhcc-eeeeeccCCCCccCHHHHHHHHHHHhc
Q 045267 357 SHGSTGGFLCHCGWNSVLESVVN----GVPLIAWPLYAEQKMNAVILTEDVK-LALRPKANENGIVGRDEIAKVVKALME 431 (482)
Q Consensus 357 ~~~~~~~~I~HGG~gs~~eal~~----GvP~v~~P~~~DQ~~na~rv~~~~G-~G~~l~~~~~~~~~~~~l~~ai~~vl~ 431 (482)
..++ ++|+=||-||+..|... ++|++.+- .| +|. ..+ ++++++.++|.+++.
T Consensus 261 ~~~D--lVIsiGGDGTlL~Aar~~~~~~iPILGIN---------------~G~LGF---Lt~---i~~~e~~~~Le~il~ 317 (508)
T PLN02935 261 TKVD--LVITLGGDGTVLWAASMFKGPVPPVVPFS---------------MGSLGF---MTP---FHSEQYRDCLDAILK 317 (508)
T ss_pred cCCC--EEEEECCcHHHHHHHHHhccCCCcEEEEe---------------CCCcce---ecc---cCHHHHHHHHHHHHc
Confidence 4567 99999999999999763 56777662 22 332 233 788999999999987
Q ss_pred C
Q 045267 432 G 432 (482)
Q Consensus 432 ~ 432 (482)
+
T Consensus 318 G 318 (508)
T PLN02935 318 G 318 (508)
T ss_pred C
Confidence 6
No 267
>PRK09165 replicative DNA helicase; Provisional
Probab=46.74 E-value=30 Score=36.12 Aligned_cols=39 Identities=23% Similarity=0.242 Sum_probs=31.2
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhc--------------CCCEEEEEcCCCCC
Q 045267 13 IVLLPSPGMGHLIPLIEFAKRLVHR--------------HHFLVTFFIPSDGP 51 (482)
Q Consensus 13 ili~~~~~~GH~~P~l~La~~L~~r--------------~GH~Vt~~~~~~~~ 51 (482)
|++..-|+.|-..=.+.+|...+.+ .|..|.|++-+...
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~ 272 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSA 272 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCH
Confidence 7778888999999999999888643 27889999877533
No 268
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=46.10 E-value=1.9e+02 Score=29.19 Aligned_cols=41 Identities=20% Similarity=0.302 Sum_probs=33.0
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCC
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPP 52 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 52 (482)
..|+|+...+.|-..-+..||..+.++ |++|.+++.+.+..
T Consensus 207 ~ii~lvGptGvGKTTt~akLA~~l~~~-g~~V~lItaDtyR~ 247 (407)
T PRK12726 207 RIISLIGQTGVGKTTTLVKLGWQLLKQ-NRTVGFITTDTFRS 247 (407)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEeCCccCc
Confidence 345666656779999999999999877 99999999886644
No 269
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=45.97 E-value=1.5e+02 Score=30.09 Aligned_cols=27 Identities=15% Similarity=-0.053 Sum_probs=21.2
Q ss_pred hCCCccEEEeCCCCccHHHHHHHcCCccEE
Q 045267 109 AKATVAALVVDLFGTDAFDVAQEFNISPYI 138 (482)
Q Consensus 109 ~~~~pD~vi~D~~~~~~~~~A~~lgIP~v~ 138 (482)
+..+||++|.+.. ...+|+++|||++.
T Consensus 353 ~~~~pDl~ig~s~---~~~~a~~~gip~~~ 379 (410)
T cd01968 353 KEKKADLLVAGGK---ERYLALKLGIPFCD 379 (410)
T ss_pred hhcCCCEEEECCc---chhhHHhcCCCEEE
Confidence 3458999999853 45789999999774
No 270
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=45.85 E-value=77 Score=28.42 Aligned_cols=36 Identities=19% Similarity=0.138 Sum_probs=29.8
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCC
Q 045267 13 IVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSD 49 (482)
Q Consensus 13 ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~ 49 (482)
.+++...-.|-..-+|.-++....+ |-+|.++++..
T Consensus 7 ~~i~gpM~SGKT~eLl~r~~~~~~~-g~~v~vfkp~i 42 (201)
T COG1435 7 EFIYGPMFSGKTEELLRRARRYKEA-GMKVLVFKPAI 42 (201)
T ss_pred EEEEccCcCcchHHHHHHHHHHHHc-CCeEEEEeccc
Confidence 4444445559999999999999998 99999999874
No 271
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=45.76 E-value=1.9e+02 Score=29.38 Aligned_cols=40 Identities=20% Similarity=0.308 Sum_probs=35.0
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCC
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGP 51 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~ 51 (482)
.+|+|+..++.|-..-...||..|..+ |++|.+++.+.+.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~-GkkVglI~aDt~R 281 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGK-KKTVGFITTDHSR 281 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHc-CCcEEEEecCCcc
Confidence 568888888889999999999999877 9999999987654
No 272
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=45.69 E-value=1.4e+02 Score=29.31 Aligned_cols=101 Identities=22% Similarity=0.314 Sum_probs=59.2
Q ss_pred CEEEEEcCCCCC-----ChHHHHHHHHHHHhcCCCEEEEEcCCCCCCchhhhhhhhcCCCceeEEEecCCCCCCCcchhh
Q 045267 11 PHIVLLPSPGMG-----HLIPLIEFAKRLVHRHHFLVTFFIPSDGPPSEAQKSTLESLPSSINSVFLPVSLNDVAEDARA 85 (482)
Q Consensus 11 ~~ili~~~~~~G-----H~~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 85 (482)
..|+|.|..+.| -..-+..|++.|.++ |.+|.++.++ .+......+....+.... +.+
T Consensus 176 ~~i~i~pg~s~~~~K~wp~e~~~~l~~~l~~~-~~~Vvl~g~~--~e~e~~~~i~~~~~~~~~-------l~~------- 238 (334)
T COG0859 176 PYIVINPGASRGSAKRWPLEHYAELAELLIAK-GYQVVLFGGP--DEEERAEEIAKGLPNAVI-------LAG------- 238 (334)
T ss_pred CeEEEeccccccccCCCCHHHHHHHHHHHHHC-CCEEEEecCh--HHHHHHHHHHHhcCCccc-------cCC-------
Confidence 567777762332 344589999999988 9899888877 222233333322221000 000
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhhCCCccEEEeCCCCccHHHHHHHcCCccEEEccchH
Q 045267 86 ETVISLTVLRSLPCLRQELTSLVAKATVAALVVDLFGTDAFDVAQEFNISPYIFYPSTA 144 (482)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~l~~~~~~~~pD~vi~D~~~~~~~~~A~~lgIP~v~~~~~~~ 144 (482)
.....++...+. +.|++|+.... ...+|..+|.|+|.++..+.
T Consensus 239 --------k~sL~e~~~li~------~a~l~I~~DSg--~~HlAaA~~~P~I~iyg~t~ 281 (334)
T COG0859 239 --------KTSLEELAALIA------GADLVIGNDSG--PMHLAAALGTPTIALYGPTS 281 (334)
T ss_pred --------CCCHHHHHHHHh------cCCEEEccCCh--HHHHHHHcCCCEEEEECCCC
Confidence 112334444443 78888855422 45789999999999887543
No 273
>PRK13196 pyrrolidone-carboxylate peptidase; Provisional
Probab=45.64 E-value=38 Score=30.88 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=21.5
Q ss_pred CEEEEEcCCCCCC--hHHHHHHHHHHH
Q 045267 11 PHIVLLPSPGMGH--LIPLIEFAKRLV 35 (482)
Q Consensus 11 ~~ili~~~~~~GH--~~P~l~La~~L~ 35 (482)
|+|++..|+-+|. .||...++++|.
T Consensus 2 ~~ILvTGF~PF~~~~~NPS~~~~~~L~ 28 (211)
T PRK13196 2 PTLLLTGFEPFHTHPVNPSAQAAQALN 28 (211)
T ss_pred CEEEEEeecCCCCCCCCcHHHHHHhcc
Confidence 6799999987754 899999999994
No 274
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=45.62 E-value=32 Score=32.40 Aligned_cols=53 Identities=17% Similarity=0.194 Sum_probs=38.3
Q ss_pred cccccccccccCchhHHHHhh-cCCcEeeccccccchhhHHHHHhhcceeeeeccCCCCccCHHHHHHHHHHHhcC
Q 045267 358 HGSTGGFLCHCGWNSVLESVV-NGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENGIVGRDEIAKVVKALMEG 432 (482)
Q Consensus 358 ~~~~~~~I~HGG~gs~~eal~-~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~vl~~ 432 (482)
.++ ++|+=||-||+..|+. +++|++.+- .|..--..+ ++.+++.+++.+++++
T Consensus 41 ~~d--~vi~iGGDGT~L~a~~~~~~Pilgin-----------------~G~lGfl~~---~~~~~~~~~l~~~~~g 94 (256)
T PRK14075 41 TAD--LIIVVGGDGTVLKAAKKVGTPLVGFK-----------------AGRLGFLSS---YTLEEIDRFLEDLKNW 94 (256)
T ss_pred CCC--EEEEECCcHHHHHHHHHcCCCEEEEe-----------------CCCCccccc---cCHHHHHHHHHHHHcC
Confidence 446 8999999999999976 578877663 232222233 6778899999998876
No 275
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=45.04 E-value=1.1e+02 Score=28.88 Aligned_cols=39 Identities=26% Similarity=0.324 Sum_probs=31.9
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCC
Q 045267 12 HIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDG 50 (482)
Q Consensus 12 ~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~ 50 (482)
.+++...++.|-..-.+.++..++..+|+.|.|++.+..
T Consensus 32 ~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~ 70 (271)
T cd01122 32 LIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEP 70 (271)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccC
Confidence 466777788899999999999886555999999997753
No 276
>PRK14478 nitrogenase molybdenum-cofactor biosynthesis protein NifE; Provisional
Probab=44.89 E-value=1.3e+02 Score=31.25 Aligned_cols=27 Identities=7% Similarity=-0.088 Sum_probs=21.4
Q ss_pred hCCCccEEEeCCCCccHHHHHHHcCCccEE
Q 045267 109 AKATVAALVVDLFGTDAFDVAQEFNISPYI 138 (482)
Q Consensus 109 ~~~~pD~vi~D~~~~~~~~~A~~lgIP~v~ 138 (482)
+..+||++|.+. ....+|+++|||++-
T Consensus 390 ~~~~pDliig~s---~~~~~a~k~giP~~~ 416 (475)
T PRK14478 390 KEAKADIMLSGG---RSQFIALKAGMPWLD 416 (475)
T ss_pred hhcCCCEEEecC---chhhhhhhcCCCEEE
Confidence 345999999973 356889999999773
No 277
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=44.87 E-value=80 Score=32.26 Aligned_cols=41 Identities=17% Similarity=0.086 Sum_probs=33.5
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCC
Q 045267 12 HIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPP 52 (482)
Q Consensus 12 ~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 52 (482)
.|+++..++.|-..-...||..|..+.|.+|.+++.+.+..
T Consensus 101 vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~ 141 (428)
T TIGR00959 101 VILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP 141 (428)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 56677777889999999999999733399999999887655
No 278
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=44.77 E-value=23 Score=34.37 Aligned_cols=35 Identities=23% Similarity=0.413 Sum_probs=28.3
Q ss_pred ccCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCC
Q 045267 8 QAAPHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPS 48 (482)
Q Consensus 8 ~~~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~ 48 (482)
|.+|+|+|+..|+.|- .+|..|.++ ||+|+++...
T Consensus 3 ~~~m~I~IiG~GaiG~-----~lA~~L~~~-g~~V~~~~r~ 37 (313)
T PRK06249 3 SETPRIGIIGTGAIGG-----FYGAMLARA-GFDVHFLLRS 37 (313)
T ss_pred CcCcEEEEECCCHHHH-----HHHHHHHHC-CCeEEEEEeC
Confidence 4567899999998884 467778777 9999999865
No 279
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.40 E-value=37 Score=32.75 Aligned_cols=54 Identities=15% Similarity=0.175 Sum_probs=39.8
Q ss_pred hcccccccccccCchhHHHHhh----cCCcEeeccccccchhhHHHHHhhcceeeeeccCCCCccCHHHHHHHHHHHhcC
Q 045267 357 SHGSTGGFLCHCGWNSVLESVV----NGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENGIVGRDEIAKVVKALMEG 432 (482)
Q Consensus 357 ~~~~~~~~I~HGG~gs~~eal~----~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~vl~~ 432 (482)
..++ ++|+=||-||+.+++. .++|++.+.. |..--..+ ++++++.++|.+++.+
T Consensus 61 ~~~d--~vi~~GGDGt~l~~~~~~~~~~~Pvlgin~-----------------G~lGFl~~---~~~~~~~~~l~~~~~g 118 (295)
T PRK01231 61 EVCD--LVIVVGGDGSLLGAARALARHNVPVLGINR-----------------GRLGFLTD---IRPDELEFKLAEVLDG 118 (295)
T ss_pred cCCC--EEEEEeCcHHHHHHHHHhcCCCCCEEEEeC-----------------Cccccccc---CCHHHHHHHHHHHHcC
Confidence 3466 9999999999999975 3778887753 22112233 7789999999999876
No 280
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=44.18 E-value=44 Score=30.08 Aligned_cols=38 Identities=21% Similarity=-0.010 Sum_probs=33.5
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCC
Q 045267 10 APHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPS 48 (482)
Q Consensus 10 ~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~ 48 (482)
+.+|++.+.++..|-....-++.-|.++ |++|+++...
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~-G~~vi~lG~~ 119 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEAN-GFEVIDLGRD 119 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHC-CCEEEECCCC
Confidence 5689999999999999999999988766 9999998754
No 281
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=44.00 E-value=34 Score=32.42 Aligned_cols=54 Identities=11% Similarity=0.078 Sum_probs=38.3
Q ss_pred cccccccccccCchhHHHHhhc-----CCcEeeccccccchhhHHHHHhhcceeeeeccCCCCccCHHHHHHHHHHHhcC
Q 045267 358 HGSTGGFLCHCGWNSVLESVVN-----GVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENGIVGRDEIAKVVKALMEG 432 (482)
Q Consensus 358 ~~~~~~~I~HGG~gs~~eal~~-----GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~vl~~ 432 (482)
.++ ++|+=||-||+..|+.. .+|++.+-.. |...-..+ ++.+++.+++.+++++
T Consensus 39 ~~D--~vi~lGGDGT~L~a~~~~~~~~~~pilgIn~~----------------G~lGFL~~---~~~~~~~~~l~~i~~g 97 (264)
T PRK03501 39 NAN--IIVSIGGDGTFLQAVRKTGFREDCLYAGISTK----------------DQLGFYCD---FHIDDLDKMIQAITKE 97 (264)
T ss_pred Ccc--EEEEECCcHHHHHHHHHhcccCCCeEEeEecC----------------CCCeEccc---CCHHHHHHHHHHHHcC
Confidence 356 99999999999999874 5666655320 22222344 7789999999999876
No 282
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=43.28 E-value=2.5e+02 Score=28.57 Aligned_cols=39 Identities=21% Similarity=0.238 Sum_probs=28.7
Q ss_pred EEEEcCC-CCCChHHHHHHHHHHHhcCCCEEEEEc-CCCCCC
Q 045267 13 IVLLPSP-GMGHLIPLIEFAKRLVHRHHFLVTFFI-PSDGPP 52 (482)
Q Consensus 13 ili~~~~-~~GH~~P~l~La~~L~~r~GH~Vt~~~-~~~~~~ 52 (482)
|+|.... +.|-..-.+.|.++|.+| |++|.=+= .+.+.+
T Consensus 3 vvIAg~~SG~GKTTvT~glm~aL~~r-g~~VqpfKvGPDYID 43 (451)
T COG1797 3 VVIAGTSSGSGKTTVTLGLMRALRRR-GLKVQPFKVGPDYID 43 (451)
T ss_pred eEEecCCCCCcHHHHHHHHHHHHHhc-CCcccccccCCCccC
Confidence 5555444 449999999999999988 99998663 344433
No 283
>PRK08840 replicative DNA helicase; Provisional
Probab=42.99 E-value=42 Score=34.71 Aligned_cols=38 Identities=16% Similarity=0.201 Sum_probs=32.2
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCC
Q 045267 13 IVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDG 50 (482)
Q Consensus 13 ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~ 50 (482)
|++..-|+.|-..-.+.+|...+.++|+.|.|++-+-.
T Consensus 220 iviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs 257 (464)
T PRK08840 220 IIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMP 257 (464)
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCC
Confidence 77788899999999999999987545999999998753
No 284
>TIGR02015 BchY chlorophyllide reductase subunit Y. This model represents the Y subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase.
Probab=42.93 E-value=1.9e+02 Score=29.51 Aligned_cols=29 Identities=14% Similarity=0.055 Sum_probs=22.8
Q ss_pred hCCCccEEEeCCCCccHHHHHHHcCCccEEEc
Q 045267 109 AKATVAALVVDLFGTDAFDVAQEFNISPYIFY 140 (482)
Q Consensus 109 ~~~~pD~vi~D~~~~~~~~~A~~lgIP~v~~~ 140 (482)
++.+||++|.... +..+|+++|||.+.+.
T Consensus 352 ~~~~pDllig~s~---~~~~A~k~gIP~vr~g 380 (422)
T TIGR02015 352 LEFEPDLAIGTTP---LVQFAKEHGIPALYFT 380 (422)
T ss_pred hhCCCCEEEcCCc---chHHHHHcCCCEEEec
Confidence 4569999998843 5668999999987643
No 285
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=42.81 E-value=1.5e+02 Score=25.77 Aligned_cols=37 Identities=16% Similarity=0.165 Sum_probs=31.8
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCC
Q 045267 13 IVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDG 50 (482)
Q Consensus 13 ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~ 50 (482)
+++...|+.|=..=.+.++.+..++ |..|.|++.+..
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~-g~~v~~~s~e~~ 38 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLAR-GEPGLYVTLEES 38 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHC-CCcEEEEECCCC
Confidence 6778888999999999999988877 999999997643
No 286
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=42.78 E-value=58 Score=33.70 Aligned_cols=41 Identities=15% Similarity=0.142 Sum_probs=34.6
Q ss_pred ccCCEEEEEcCCCCCChHHH------------HHHHHHHHhcCCCEEEEEcCCC
Q 045267 8 QAAPHIVLLPSPGMGHLIPL------------IEFAKRLVHRHHFLVTFFIPSD 49 (482)
Q Consensus 8 ~~~~~ili~~~~~~GH~~P~------------l~La~~L~~r~GH~Vt~~~~~~ 49 (482)
++-+||++...|+.=.+.|. .+||+++..+ |++||+++.+.
T Consensus 254 l~gkkvLITaGpT~E~IDpVR~ItN~SSGkmG~alA~aa~~~-GA~VtlI~Gp~ 306 (475)
T PRK13982 254 LAGRRVLITAGPTHEPIDPVRYIANRSSGKQGFAIAAAAAAA-GAEVTLISGPV 306 (475)
T ss_pred cCCCEEEEecCCccccCCcceeeCCCCchHHHHHHHHHHHHC-CCcEEEEeCCc
Confidence 45578999999999888885 5899999988 99999998653
No 287
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=42.61 E-value=1.8e+02 Score=28.47 Aligned_cols=103 Identities=20% Similarity=0.248 Sum_probs=55.5
Q ss_pred CEEEEEcCCCCC---C--hHHHHHHHHHHHhcCCCEEEEEcCCCCCCchhhhhhhhcCCCceeEEEecCCCCCCCcchhh
Q 045267 11 PHIVLLPSPGMG---H--LIPLIEFAKRLVHRHHFLVTFFIPSDGPPSEAQKSTLESLPSSINSVFLPVSLNDVAEDARA 85 (482)
Q Consensus 11 ~~ili~~~~~~G---H--~~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 85 (482)
.-|+|.|+.+.| + ..-+..|++.|.++ |++|.+++.+...+ ....+....+.... + ....+.
T Consensus 181 ~~i~i~pga~~~~~K~Wp~e~~a~l~~~l~~~-~~~vvl~Gg~~e~~--~~~~i~~~~~~~~~----~-~~~~l~----- 247 (348)
T PRK10916 181 PIIGFCPGAEFGPAKRWPHYHYAELAQQLIDE-GYQVVLFGSAKDHE--AGNEILAALNTEQQ----A-WCRNLA----- 247 (348)
T ss_pred CEEEEeCCCCCccccCCCHHHHHHHHHHHHHC-CCeEEEEeCHHhHH--HHHHHHHhcccccc----c-ceeecc-----
Confidence 457777744322 2 22478999999876 99998887653222 11222111111000 0 000000
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhhCCCccEEEeCCCCccHHHHHHHcCCccEEEcc
Q 045267 86 ETVISLTVLRSLPCLRQELTSLVAKATVAALVVDLFGTDAFDVAQEFNISPYIFYP 141 (482)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~l~~~~~~~~pD~vi~D~~~~~~~~~A~~lgIP~v~~~~ 141 (482)
-.....++...+. +.|++|+.... ...+|..+|+|++.++.
T Consensus 248 -------g~~sL~el~ali~------~a~l~I~nDTG--p~HlAaA~g~P~valfG 288 (348)
T PRK10916 248 -------GETQLEQAVILIA------ACKAIVTNDSG--LMHVAAALNRPLVALYG 288 (348)
T ss_pred -------CCCCHHHHHHHHH------hCCEEEecCCh--HHHHHHHhCCCEEEEEC
Confidence 0112334445554 78999966532 45789999999998876
No 288
>TIGR01196 edd 6-phosphogluconate dehydratase. A close homolog, designated MocB (mannityl opine catabolism), is found in a mannopine catabolism region of a plasmid of Agrobacterium tumefaciens. However, it is not essential for mannopine catabolism, branches within the cluster of 6-phosphogluconate dehydratases (with a short branch length) in a tree rooted by the presence of other dehydyatases. It may represent an authentic 6-phosphogluconate dehydratase, redundant with the chromosomal copy shown to exist in plasmid-cured strains. This model includes mocB above the trusted cutoff, although the designation is somewhat tenuous.
Probab=42.59 E-value=2.1e+02 Score=30.45 Aligned_cols=112 Identities=8% Similarity=0.053 Sum_probs=66.8
Q ss_pred hhhhccCCEEEEEcC-----CCCCChHHHHHHHHHHHhcCCCEEEEE-cCCCCCCchhhhhhhhcCCCceeEEEecCCCC
Q 045267 4 TLQAQAAPHIVLLPS-----PGMGHLIPLIEFAKRLVHRHHFLVTFF-IPSDGPPSEAQKSTLESLPSSINSVFLPVSLN 77 (482)
Q Consensus 4 ~~~~~~~~~ili~~~-----~~~GH~~P~l~La~~L~~r~GH~Vt~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 77 (482)
++..++|..|.|+.. |..-|+..+-.++++-++..|.-...+ ..+..- +
T Consensus 58 ~~~~~~kP~IgIvns~~d~~p~h~hl~~~~~~vk~~i~~aGg~~~~~Gg~~a~c-------------------------D 112 (601)
T TIGR01196 58 PLGSMKRPNLAIITAYNDMLSAHQPFKNYPDLIKKALQEANAVAQVAGGVPAMC-------------------------D 112 (601)
T ss_pred HHhccCCCEEEEEeccccCccccccHHHHHHHHHHHHHHCCCEeEEeCCcCccC-------------------------C
Confidence 345677888999886 344566777777777666657666666 222110 1
Q ss_pred CCCcchhhHHHHHHHHHhhhHHHHHHHHHHhhCCCccEEE----eCCCCccHHHHHHHc-CCccEEEccchH
Q 045267 78 DVAEDARAETVISLTVLRSLPCLRQELTSLVAKATVAALV----VDLFGTDAFDVAQEF-NISPYIFYPSTA 144 (482)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pD~vi----~D~~~~~~~~~A~~l-gIP~v~~~~~~~ 144 (482)
+...+-.. + ++....-+.+...++..++...+|.+| ||-..++.+.+|-.+ ++|.+.+...+.
T Consensus 113 Git~G~~G---M-~~SL~SRdlIA~sie~~l~~~~fDg~v~l~~CDKivPG~lMaA~r~g~lP~IfV~gGpM 180 (601)
T TIGR01196 113 GVTQGYDG---M-ELSLFSRDVIAMSTAIGLSHNMFDGALFLGVCDKIVPGLLIGALSFGHLPAVFVPSGPM 180 (601)
T ss_pred CccCCCcc---c-chhhhcHHHHHHHHHHHhcCCCcceeEEeccCCCCcHHHHHHHHhcCCCCEEEEeCCCc
Confidence 11111110 1 111222233444455555667899876 788778777888888 999888765543
No 289
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=42.56 E-value=51 Score=24.60 Aligned_cols=35 Identities=14% Similarity=0.057 Sum_probs=30.8
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEc
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFI 46 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~ 46 (482)
+-++++..+...|...+-.+|+.|.++ |..|...=
T Consensus 16 k~~v~i~HG~~eh~~ry~~~a~~L~~~-G~~V~~~D 50 (79)
T PF12146_consen 16 KAVVVIVHGFGEHSGRYAHLAEFLAEQ-GYAVFAYD 50 (79)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHHHHhC-CCEEEEEC
Confidence 468888999999999999999999887 99988663
No 290
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=42.46 E-value=32 Score=31.68 Aligned_cols=38 Identities=13% Similarity=0.143 Sum_probs=31.6
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCC
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSD 49 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~ 49 (482)
..+++...++.|-..-...++.+.+++ |..|.|++.+.
T Consensus 26 ~~~~i~G~~GsGKt~l~~~~~~~~~~~-g~~~~y~~~e~ 63 (234)
T PRK06067 26 SLILIEGDHGTGKSVLSQQFVYGALKQ-GKKVYVITTEN 63 (234)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHhC-CCEEEEEEcCC
Confidence 357777778889999999998887677 99999999864
No 291
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=41.96 E-value=94 Score=29.26 Aligned_cols=37 Identities=19% Similarity=0.147 Sum_probs=32.0
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCC
Q 045267 12 HIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSD 49 (482)
Q Consensus 12 ~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~ 49 (482)
-+++...|+.|=..=.+.++...+++ |..|.|++.+.
T Consensus 38 ~~lI~G~pGtGKT~l~~qf~~~~a~~-Ge~vlyis~Ee 74 (259)
T TIGR03878 38 VINITGVSDTGKSLMVEQFAVTQASR-GNPVLFVTVES 74 (259)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhC-CCcEEEEEecC
Confidence 47778888999999999999988777 99999999874
No 292
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=41.83 E-value=1.4e+02 Score=31.05 Aligned_cols=38 Identities=13% Similarity=0.197 Sum_probs=32.7
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCC
Q 045267 12 HIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDG 50 (482)
Q Consensus 12 ~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~ 50 (482)
-+++...|+.|-..=.+.++.+.+++ |.+|.|++.+.-
T Consensus 265 ~~li~G~~G~GKt~l~~~f~~~~~~~-ge~~~y~s~eEs 302 (484)
T TIGR02655 265 IILATGATGTGKTLLVSKFLENACAN-KERAILFAYEES 302 (484)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEEeeCC
Confidence 47777888889999999999999887 999999997643
No 293
>PRK14098 glycogen synthase; Provisional
Probab=41.64 E-value=38 Score=35.29 Aligned_cols=38 Identities=11% Similarity=0.155 Sum_probs=29.5
Q ss_pred CCEEEEEcCC------CCCChHHHHHHHHHHHhcCCCEEEEEcCC
Q 045267 10 APHIVLLPSP------GMGHLIPLIEFAKRLVHRHHFLVTFFIPS 48 (482)
Q Consensus 10 ~~~ili~~~~------~~GH~~P~l~La~~L~~r~GH~Vt~~~~~ 48 (482)
+|+|++++.- +.|=-.-.-+|.++|+++ ||+|.++.|.
T Consensus 5 ~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~-g~~v~v~~P~ 48 (489)
T PRK14098 5 NFKVLYVSGEVSPFVRVSALADFMASFPQALEEE-GFEARIMMPK 48 (489)
T ss_pred CcEEEEEeecchhhcccchHHHHHHHHHHHHHHC-CCeEEEEcCC
Confidence 3789998762 334455577899999888 9999999985
No 294
>cd01965 Nitrogenase_MoFe_beta_like Nitrogenase_MoFe_beta_like: Nitrogenase MoFe protein, beta subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. This group contains the beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (Fe
Probab=41.41 E-value=1.7e+02 Score=29.77 Aligned_cols=31 Identities=19% Similarity=0.184 Sum_probs=23.7
Q ss_pred HHhhCCCccEEEeCCCCccHHHHHHHcCCccEEE
Q 045267 106 SLVAKATVAALVVDLFGTDAFDVAQEFNISPYIF 139 (482)
Q Consensus 106 ~~~~~~~pD~vi~D~~~~~~~~~A~~lgIP~v~~ 139 (482)
+++++.+||+||.+.. ...+|+++|+|++.+
T Consensus 365 ~~i~~~~pdliig~~~---~~~~a~~~~ip~i~~ 395 (428)
T cd01965 365 SLAKEEPVDLLIGNSH---GRYLARDLGIPLVRV 395 (428)
T ss_pred HHhhccCCCEEEECch---hHHHHHhcCCCEEEe
Confidence 3444569999999985 367899999998753
No 295
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=41.12 E-value=1.5e+02 Score=25.54 Aligned_cols=28 Identities=14% Similarity=0.251 Sum_probs=21.7
Q ss_pred ccccccccCch------hHHHHhhcCCcEeeccc
Q 045267 361 TGGFLCHCGWN------SVLESVVNGVPLIAWPL 388 (482)
Q Consensus 361 ~~~~I~HGG~g------s~~eal~~GvP~v~~P~ 388 (482)
.+++++|.|-| .+.+|...++|+|++.-
T Consensus 60 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~g 93 (162)
T cd07038 60 LGALVTTYGVGELSALNGIAGAYAEHVPVVHIVG 93 (162)
T ss_pred CEEEEEcCCccHHHHHHHHHHHHHcCCCEEEEec
Confidence 44777777744 67889999999999963
No 296
>COG4394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.87 E-value=2.5e+02 Score=26.90 Aligned_cols=174 Identities=11% Similarity=0.073 Sum_probs=0.0
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCcccccCCCCCCCCCCchhHHhhhcCC---------Ceeecccc
Q 045267 280 SGGTLSCEQLNELALGLEMSEQRFLWVVRSPNNAANSTFFSVNSHKDPYDFLPKGFLDRTKGR---------GMLVPSWA 350 (482)
Q Consensus 280 S~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~---------~v~~~~~i 350 (482)
|...-....+...++.+++++.+++..+..+.. ..++.+.+....... .++...|+
T Consensus 182 slFaY~npa~~s~ieq~r~a~~p~llL~~e~~~---------------~~~~~~~~~~~~~a~Gdv~~~~~lrvvklPFv 246 (370)
T COG4394 182 SLFAYENPALPSWIEQLRKADKPILLLIPEGKT---------------QANFAKYFDNNNNADGDVFQTAKLRVVKLPFV 246 (370)
T ss_pred hhhccCCcchHHHHHHHHhcCCCEEEEcccchH---------------HHHHHHHcCCCcccccchhcccceEEEEecCC
Q ss_pred chhh---hhhcccccccccccCchhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCCCCccCHHHHHHHHH
Q 045267 351 PQAQ---VLSHGSTGGFLCHCGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENGIVGRDEIAKVVK 427 (482)
Q Consensus 351 pq~~---lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~ 427 (482)
||++ +|-.|++ .+| -|--|+..|..+|+|.+=-=+.-|....-+.++. .=--...-... -+.+.+++...
T Consensus 247 pqddyd~LL~lcD~-n~V--RGEDSFVRAq~agkPflWHIYpQdentHl~KLea-Fldky~~~lp~---~~a~alrt~~~ 319 (370)
T COG4394 247 PQDDYDELLWLCDF-NLV--RGEDSFVRAQLAGKPFLWHIYPQDENTHLAKLEA-FLDKYCPFLPP---NTAKALRTFWI 319 (370)
T ss_pred cHhHHHHHHHhccc-cee--ecchHHHHHHHcCCCcEEEecCCccccHHHHHHH-HHHHhCCCCCH---HHHHHHHHHHH
Q ss_pred HHhcCC--ch-HHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhccC
Q 045267 428 ALMEGE--QG-KEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKWNNNEG 475 (482)
Q Consensus 428 ~vl~~~--~~-~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~ 475 (482)
..=.++ +. +-+.++.+.+++..+.--.+-+..-..++.|+....+..+
T Consensus 320 ~~N~~~ls~~w~~f~~~~~~~r~~a~~wa~~l~~~~dlaekLvaF~ek~~k 370 (370)
T COG4394 320 AWNAGRLSDDWSYFFKNLKEWREHAKKWANHLIKNPDLAEKLVAFIEKIGK 370 (370)
T ss_pred HhcCCcccccHHHHHHhhHHHHHHHHHHHHHHccCccHHHHHHHHHHHhcC
No 297
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative. This family consists of examples of the putative ADP-heptose:LPS heptosyltransferase III, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria. This enzyme may be less widely distributed than heptosyltransferases I and II.
Probab=40.29 E-value=3.1e+02 Score=26.76 Aligned_cols=103 Identities=11% Similarity=0.050 Sum_probs=55.4
Q ss_pred CEEEEEcCCCCC----ChHHHHHHHHHHHhcCCCEEEEEcCCCCCCchhhhhhhhcCCCceeEEEecCCCCCCCcchhhH
Q 045267 11 PHIVLLPSPGMG----HLIPLIEFAKRLVHRHHFLVTFFIPSDGPPSEAQKSTLESLPSSINSVFLPVSLNDVAEDARAE 86 (482)
Q Consensus 11 ~~ili~~~~~~G----H~~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 86 (482)
..|++.|+.+.. ...-+..|++.|.++ |.+|.+++.+...+....+.+....+. .....+
T Consensus 182 ~~i~i~p~a~~~~K~Wp~e~~~~l~~~l~~~-~~~ivl~g~p~~~e~~~~~~i~~~~~~--------~~~~~l------- 245 (344)
T TIGR02201 182 NYIVIQPTSRWFFKCWDNDRFSALIDALHAR-GYEVVLTSGPDKDELAMVNEIAQGCQT--------PRVTSL------- 245 (344)
T ss_pred CEEEEeCCCCccccCCCHHHHHHHHHHHHhC-CCeEEEecCCCHHHHHHHHHHHhhCCC--------Cccccc-------
Confidence 346666654321 133477899999877 999888875432221111111111000 000000
Q ss_pred HHHHHHHHhhhHHHHHHHHHHhhCCCccEEEeCCCCccHHHHHHHcCCccEEEccc
Q 045267 87 TVISLTVLRSLPCLRQELTSLVAKATVAALVVDLFGTDAFDVAQEFNISPYIFYPS 142 (482)
Q Consensus 87 ~~~~~~~~~~~~~l~~~l~~~~~~~~pD~vi~D~~~~~~~~~A~~lgIP~v~~~~~ 142 (482)
.-.....++...+. +.|++|+... +...+|..+|+|+|.++..
T Consensus 246 -----~g~~sL~el~ali~------~a~l~Vs~DS--Gp~HlAaA~g~p~v~Lfgp 288 (344)
T TIGR02201 246 -----AGKLTLPQLAALID------HARLFIGVDS--VPMHMAAALGTPLVALFGP 288 (344)
T ss_pred -----CCCCCHHHHHHHHH------hCCEEEecCC--HHHHHHHHcCCCEEEEECC
Confidence 00112344555554 7899997642 3567899999999988763
No 298
>TIGR00110 ilvD dihydroxy-acid dehydratase. This model generates scores of up to 150 bits vs. 6-phosphogluconate dehydratase, a homologous enzyme.
Probab=40.23 E-value=1.9e+02 Score=30.36 Aligned_cols=47 Identities=15% Similarity=0.201 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhhCCCccEEE----eCCCCccHHHHHHHcCCccEEEccchH
Q 045267 98 PCLRQELTSLVAKATVAALV----VDLFGTDAFDVAQEFNISPYIFYPSTA 144 (482)
Q Consensus 98 ~~l~~~l~~~~~~~~pD~vi----~D~~~~~~~~~A~~lgIP~v~~~~~~~ 144 (482)
+.+...++..++...+|.+| ||-..++...+|..++||.+.+...+.
T Consensus 75 elIAdsiE~~~~~~~~Dg~v~l~~CDK~~PG~lMaaarlniP~i~v~gGpm 125 (535)
T TIGR00110 75 EIIADSVETMVNAHRFDGLVCIPSCDKITPGMLMAAARLNIPSIFVTGGPM 125 (535)
T ss_pred HHHHHHHHHHHhcCCcceEEEeccCCCCcHHHHHHHHhcCCCEEEEeCCCc
Confidence 44455566666677899887 788788788899999999988866543
No 299
>COG0801 FolK 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism]
Probab=40.14 E-value=62 Score=27.99 Aligned_cols=34 Identities=15% Similarity=0.107 Sum_probs=26.1
Q ss_pred EEEEeccCCCCCCHHHHHHHHHHHHhcCCceEEE
Q 045267 273 VLFVSFGSGGTLSCEQLNELALGLEMSEQRFLWV 306 (482)
Q Consensus 273 ~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~ 306 (482)
.+|+++||--......++..+++|...+.--++.
T Consensus 3 ~vyl~LGSNlgd~~~~l~~A~~~L~~~~~~~v~~ 36 (160)
T COG0801 3 RVYLGLGSNLGDRLKQLRAALAALDALADIRVVA 36 (160)
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHhCCCceEEE
Confidence 7999999976666777888999998887533333
No 300
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=40.06 E-value=2.5e+02 Score=26.94 Aligned_cols=38 Identities=13% Similarity=0.004 Sum_probs=23.2
Q ss_pred cCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCC
Q 045267 9 AAPHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPS 48 (482)
Q Consensus 9 ~~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~ 48 (482)
+++||+++.++....+..++.-.+.= +. +++|..+.+.
T Consensus 88 ~~~ri~vl~Sg~g~nl~al~~~~~~~-~~-~~~i~~visn 125 (286)
T PRK13011 88 ARPKVLIMVSKFDHCLNDLLYRWRIG-EL-PMDIVGVVSN 125 (286)
T ss_pred cCceEEEEEcCCcccHHHHHHHHHcC-CC-CcEEEEEEEC
Confidence 45789999999655554444332221 22 5888887653
No 301
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=39.99 E-value=1e+02 Score=30.88 Aligned_cols=37 Identities=27% Similarity=0.387 Sum_probs=31.2
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCC
Q 045267 12 HIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSD 49 (482)
Q Consensus 12 ~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~ 49 (482)
-+++..-|+.|-..=++.++..+.++ |..|.|++.+.
T Consensus 84 lvLI~G~pG~GKStLllq~a~~~a~~-g~~VlYvs~EE 120 (372)
T cd01121 84 VILIGGDPGIGKSTLLLQVAARLAKR-GGKVLYVSGEE 120 (372)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEECCc
Confidence 36677778889999999999999887 89999998763
No 302
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.99 E-value=38 Score=32.34 Aligned_cols=53 Identities=17% Similarity=0.178 Sum_probs=37.8
Q ss_pred cccccccccccCchhHHHHhh---cCCcEeeccccccchhhHHHHHhhcceeeeeccCCCCccCHHHHHHHHHHHhcC
Q 045267 358 HGSTGGFLCHCGWNSVLESVV---NGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENGIVGRDEIAKVVKALMEG 432 (482)
Q Consensus 358 ~~~~~~~I~HGG~gs~~eal~---~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~vl~~ 432 (482)
.++ ++|.-||-||+.+++. .++|++.+|... .--..+ +.++++..++.+++.+
T Consensus 57 ~~d--~vi~iGGDGTlL~a~~~~~~~~pi~gIn~G~-----------------lGFl~~---~~~~~~~~~l~~i~~g 112 (277)
T PRK03708 57 DVD--FIIAIGGDGTILRIEHKTKKDIPILGINMGT-----------------LGFLTE---VEPEETFFALSRLLEG 112 (277)
T ss_pred CCC--EEEEEeCcHHHHHHHHhcCCCCeEEEEeCCC-----------------CCcccc---CCHHHHHHHHHHHHcC
Confidence 456 9999999999999874 456888887421 111122 6678888888888876
No 303
>PRK07206 hypothetical protein; Provisional
Probab=39.47 E-value=62 Score=32.77 Aligned_cols=32 Identities=13% Similarity=-0.039 Sum_probs=23.0
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCC
Q 045267 12 HIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSD 49 (482)
Q Consensus 12 ~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~ 49 (482)
+|+++-.... -..+++++.++ |+++..++...
T Consensus 4 ~~liv~~~~~-----~~~~~~a~~~~-G~~~v~v~~~~ 35 (416)
T PRK07206 4 KVVIVDPFSS-----GKFLAPAFKKR-GIEPIAVTSSC 35 (416)
T ss_pred eEEEEcCCch-----HHHHHHHHHHc-CCeEEEEEcCC
Confidence 5777765433 34688999877 99999887653
No 304
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II. This family consists of examples of ADP-heptose:LPS heptosyltransferase II, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria.
Probab=39.09 E-value=2.5e+02 Score=27.22 Aligned_cols=101 Identities=26% Similarity=0.308 Sum_probs=56.3
Q ss_pred CCEEEEEcCCCCC---C--hHHHHHHHHHHHhcCCCEEEEEcCCCCCCchhhhhhhhcCCCceeEEEecCCCCCCCcchh
Q 045267 10 APHIVLLPSPGMG---H--LIPLIEFAKRLVHRHHFLVTFFIPSDGPPSEAQKSTLESLPSSINSVFLPVSLNDVAEDAR 84 (482)
Q Consensus 10 ~~~ili~~~~~~G---H--~~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 84 (482)
+..|+|.|+.+.| . ..-+..|++.|.++ |.+|.+++.+...+ ....+....+.. . . .+.
T Consensus 174 ~~~i~i~pga~~~~~K~Wp~e~~~~li~~l~~~-~~~ivl~G~~~e~~--~~~~i~~~~~~~--~----~---~l~---- 237 (334)
T TIGR02195 174 RPIIAFCPGAEFGPAKRWPHEHYAELAKRLIDQ-GYQVVLFGSAKDHP--AGNEIEALLPGE--L----R---NLA---- 237 (334)
T ss_pred CCEEEEcCCCCCCccCCCCHHHHHHHHHHHHHC-CCEEEEEEChhhHH--HHHHHHHhCCcc--c----c---cCC----
Confidence 3456666654333 1 23588999999876 99998887653222 111221111100 0 0 000
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHhhCCCccEEEeCCCCccHHHHHHHcCCccEEEccc
Q 045267 85 AETVISLTVLRSLPCLRQELTSLVAKATVAALVVDLFGTDAFDVAQEFNISPYIFYPS 142 (482)
Q Consensus 85 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~pD~vi~D~~~~~~~~~A~~lgIP~v~~~~~ 142 (482)
-.....++...+. +.|++|+.... ...+|..+|+|++.++..
T Consensus 238 --------g~~sL~el~ali~------~a~l~I~~DSG--p~HlAaA~~~P~i~lfG~ 279 (334)
T TIGR02195 238 --------GETSLDEAVDLIA------LAKAVVTNDSG--LMHVAAALNRPLVALYGS 279 (334)
T ss_pred --------CCCCHHHHHHHHH------hCCEEEeeCCH--HHHHHHHcCCCEEEEECC
Confidence 0112334445554 78999965522 457888999999988764
No 305
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=38.99 E-value=54 Score=26.77 Aligned_cols=37 Identities=19% Similarity=0.064 Sum_probs=32.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCC
Q 045267 12 HIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSD 49 (482)
Q Consensus 12 ~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~ 49 (482)
||++.+.++..|-.-..-++.-|..+ |++|.+.....
T Consensus 1 ~vv~~~~~gd~H~lG~~~~~~~l~~~-G~~vi~lG~~v 37 (122)
T cd02071 1 RILVAKPGLDGHDRGAKVIARALRDA-GFEVIYTGLRQ 37 (122)
T ss_pred CEEEEecCCChhHHHHHHHHHHHHHC-CCEEEECCCCC
Confidence 48999999999999999999989776 99999998753
No 306
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=38.85 E-value=2.5e+02 Score=30.71 Aligned_cols=35 Identities=26% Similarity=0.386 Sum_probs=28.8
Q ss_pred EEEEEcCCC-CCChHHHHHHHHHHHhcCCCEEEEEcC
Q 045267 12 HIVLLPSPG-MGHLIPLIEFAKRLVHRHHFLVTFFIP 47 (482)
Q Consensus 12 ~ili~~~~~-~GH~~P~l~La~~L~~r~GH~Vt~~~~ 47 (482)
.|.|.+..+ .|-..-.+.|++.|.++ |.+|.++=|
T Consensus 4 ~l~I~~T~t~~GKT~vslgL~~~L~~~-G~~Vg~fKP 39 (684)
T PRK05632 4 SIYLAPTGTGVGLTSVSLGLMRALERK-GVKVGFFKP 39 (684)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEeCC
Confidence 466665555 49999999999999887 999999953
No 307
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=38.66 E-value=58 Score=29.25 Aligned_cols=39 Identities=18% Similarity=-0.095 Sum_probs=34.8
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCC
Q 045267 10 APHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSD 49 (482)
Q Consensus 10 ~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~ 49 (482)
+.+|++.+.++..|-....-++.-|..+ |++|+++....
T Consensus 84 ~~~vv~~t~~gd~H~lG~~~v~~~l~~~-G~~vi~LG~~v 122 (197)
T TIGR02370 84 LGKVVCGVAEGDVHDIGKNIVVTMLRAN-GFDVIDLGRDV 122 (197)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhC-CcEEEECCCCC
Confidence 4589999999999999999999999776 99999998664
No 308
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=38.59 E-value=98 Score=26.82 Aligned_cols=27 Identities=30% Similarity=0.580 Sum_probs=22.1
Q ss_pred ccccccccCch------hHHHHhhcCCcEeecc
Q 045267 361 TGGFLCHCGWN------SVLESVVNGVPLIAWP 387 (482)
Q Consensus 361 ~~~~I~HGG~g------s~~eal~~GvP~v~~P 387 (482)
.+++++|+|-| .+.||...++|||++.
T Consensus 61 ~gv~~~t~GpG~~n~~~gl~~A~~~~~Pvl~i~ 93 (162)
T cd07037 61 PVAVVCTSGTAVANLLPAVVEAYYSGVPLLVLT 93 (162)
T ss_pred CEEEEECCchHHHHHhHHHHHHHhcCCCEEEEE
Confidence 34788888855 6779999999999995
No 309
>PRK04940 hypothetical protein; Provisional
Probab=38.47 E-value=66 Score=28.46 Aligned_cols=32 Identities=19% Similarity=0.065 Sum_probs=25.4
Q ss_pred CccEEEeCCCC-ccHHHHHHHcCCccEEEccch
Q 045267 112 TVAALVVDLFG-TDAFDVAQEFNISPYIFYPST 143 (482)
Q Consensus 112 ~pD~vi~D~~~-~~~~~~A~~lgIP~v~~~~~~ 143 (482)
+++++|...+. ++|..+|++.|+|.|.++|+.
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~~aVLiNPAv 92 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGIRQVIFNPNL 92 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCCCEEEECCCC
Confidence 56788866544 678899999999999988864
No 310
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=38.36 E-value=24 Score=24.89 Aligned_cols=57 Identities=11% Similarity=0.249 Sum_probs=36.7
Q ss_pred eccCCCCccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHH
Q 045267 409 PKANENGIVGRDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASK 469 (482)
Q Consensus 409 l~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~ 469 (482)
++.+.+|.++.+++...+..+.... .......+.+.+-...+.++...-..+||.+.
T Consensus 9 ~D~d~~G~i~~~el~~~~~~~~~~~----~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 9 FDKDGDGYISKEELRRALKHLGRDM----SDEESDEMIDQIFREFDTDGDGRISFDEFLNF 65 (66)
T ss_dssp HSTTSSSEEEHHHHHHHHHHTTSHS----THHHHHHHHHHHHHHHTTTSSSSEEHHHHHHH
T ss_pred HcCCccCCCCHHHHHHHHHHhcccc----cHHHHHHHHHHHHHHhCCCCcCCCcHHHHhcc
Confidence 4566688999999999998886532 13333334444444455666666677777653
No 311
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=38.36 E-value=1.6e+02 Score=23.50 Aligned_cols=83 Identities=16% Similarity=0.189 Sum_probs=47.6
Q ss_pred ChHHHHHHHHHHHhcCCCEEEEEcCCCCCCchhhhhhhhcCCCceeEEEec-CCCCCCCcchhhHHHHHHHHHhhhHHHH
Q 045267 23 HLIPLIEFAKRLVHRHHFLVTFFIPSDGPPSEAQKSTLESLPSSINSVFLP-VSLNDVAEDARAETVISLTVLRSLPCLR 101 (482)
Q Consensus 23 H~~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 101 (482)
+=.-++.+|+.|.+. |+++ ++|.. ....+.. .|+.+..+. ... + ..+.
T Consensus 10 ~K~~~~~~a~~l~~~-G~~i-~AT~g-------Ta~~L~~--~Gi~~~~v~~~~~-----~-------------g~~~-- 58 (112)
T cd00532 10 VKAMLVDLAPKLSSD-GFPL-FATGG-------TSRVLAD--AGIPVRAVSKRHE-----D-------------GEPT-- 58 (112)
T ss_pred cHHHHHHHHHHHHHC-CCEE-EECcH-------HHHHHHH--cCCceEEEEecCC-----C-------------CCcH--
Confidence 445578999999876 9998 45543 2222331 355555544 221 0 1122
Q ss_pred HHHHHHhhC-CCccEEEeCC--CC-----ccH---HHHHHHcCCccEE
Q 045267 102 QELTSLVAK-ATVAALVVDL--FG-----TDA---FDVAQEFNISPYI 138 (482)
Q Consensus 102 ~~l~~~~~~-~~pD~vi~D~--~~-----~~~---~~~A~~lgIP~v~ 138 (482)
+.+++++ .++|+||.-. .. ..+ ..+|-..+||++.
T Consensus 59 --i~~~i~~~g~idlVIn~~~~~~~~~~~~dg~~iRR~A~~~~Ip~~T 104 (112)
T cd00532 59 --VDAAIAEKGKFDVVINLRDPRRDRCTDEDGTALLRLARLYKIPVTT 104 (112)
T ss_pred --HHHHHhCCCCEEEEEEcCCCCcccccCCChHHHHHHHHHcCCCEEE
Confidence 3344456 7999999733 21 112 3578889999765
No 312
>PRK09620 hypothetical protein; Provisional
Probab=38.35 E-value=47 Score=30.70 Aligned_cols=38 Identities=8% Similarity=0.107 Sum_probs=28.3
Q ss_pred CCEEEEEcCCCCCChHHH------------HHHHHHHHhcCCCEEEEEcCC
Q 045267 10 APHIVLLPSPGMGHLIPL------------IEFAKRLVHRHHFLVTFFIPS 48 (482)
Q Consensus 10 ~~~ili~~~~~~GH~~P~------------l~La~~L~~r~GH~Vt~~~~~ 48 (482)
-++|++...|+.=.+.|. ..||++|.++ |++|+++...
T Consensus 3 gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~-Ga~V~li~g~ 52 (229)
T PRK09620 3 GKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISK-GAHVIYLHGY 52 (229)
T ss_pred CCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHC-CCeEEEEeCC
Confidence 457888877765554442 5789999988 9999999754
No 313
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=38.30 E-value=3e+02 Score=24.81 Aligned_cols=95 Identities=12% Similarity=0.095 Sum_probs=52.5
Q ss_pred hhhhhcccccccccccCchhHHH-----HhhcCCcEeec--cccccchhhHHHHHhhcceeeeeccCCCCccCHHHHHHH
Q 045267 353 AQVLSHGSTGGFLCHCGWNSVLE-----SVVNGVPLIAW--PLYAEQKMNAVILTEDVKLALRPKANENGIVGRDEIAKV 425 (482)
Q Consensus 353 ~~lL~~~~~~~~I~HGG~gs~~e-----al~~GvP~v~~--P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~a 425 (482)
...+..++ ++|..-|...+.+ |-..|+|+-++ |-..| +..-..+.+ -++-+.+..+.....-...|++.
T Consensus 64 ~~dl~~~~--lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~-f~~pa~~~~-g~l~iaisT~G~sP~la~~lr~~ 139 (205)
T TIGR01470 64 ADILEGAF--LVIAATDDEELNRRVAHAARARGVPVNVVDDPELCS-FIFPSIVDR-SPVVVAISSGGAAPVLARLLRER 139 (205)
T ss_pred HHHhCCcE--EEEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCe-EEEeeEEEc-CCEEEEEECCCCCcHHHHHHHHH
Confidence 44567777 8888888764433 44568888443 22222 222223333 23444444332112345778888
Q ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHH
Q 045267 426 VKALMEGEQGKEVRNKMKDLKDAAAAV 452 (482)
Q Consensus 426 i~~vl~~~~~~~~r~~a~~l~~~~~~a 452 (482)
|.+++.+. ...+-+.+.++++.+++.
T Consensus 140 ie~~l~~~-~~~~~~~~~~~R~~~k~~ 165 (205)
T TIGR01470 140 IETLLPPS-LGDLATLAATWRDAVKKR 165 (205)
T ss_pred HHHhcchh-HHHHHHHHHHHHHHHHhh
Confidence 88888532 235667777777777753
No 314
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=38.07 E-value=38 Score=31.32 Aligned_cols=36 Identities=11% Similarity=0.072 Sum_probs=26.2
Q ss_pred CEEEEEcCCCCCChHHH------------HHHHHHHHhcCCCEEEEEcC
Q 045267 11 PHIVLLPSPGMGHLIPL------------IEFAKRLVHRHHFLVTFFIP 47 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~------------l~La~~L~~r~GH~Vt~~~~ 47 (482)
|+|++...|+.=.+.|. .+||++|.++ ||+|+++..
T Consensus 1 ~~vliT~G~T~e~iD~VR~itN~SSG~iG~aLA~~L~~~-G~~V~li~r 48 (229)
T PRK06732 1 MKILITSGGTTEPIDSVRGITNHSTGQLGKIIAETFLAA-GHEVTLVTT 48 (229)
T ss_pred CEEEEcCCCcccccCCceeecCccchHHHHHHHHHHHhC-CCEEEEEEC
Confidence 45676666666555542 5788999888 999999964
No 315
>TIGR01162 purE phosphoribosylaminoimidazole carboxylase, PurE protein. Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, an N5-CAIR mutase.
Probab=38.07 E-value=2.3e+02 Score=24.39 Aligned_cols=32 Identities=13% Similarity=0.231 Sum_probs=20.0
Q ss_pred cCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHH
Q 045267 417 VGRDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAV 452 (482)
Q Consensus 417 ~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a 452 (482)
.+...++..|-.+ .|+ +++++.+.++++.++.
T Consensus 116 ~nAa~~AaqIl~~-~d~---~l~~kl~~~r~~~~~~ 147 (156)
T TIGR01162 116 GNAALLAAQILGI-KDP---ELAEKLKEYRENQKEE 147 (156)
T ss_pred hHHHHHHHHHHcC-CCH---HHHHHHHHHHHHHHHH
Confidence 4556555555333 454 7788887777777753
No 316
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=38.06 E-value=71 Score=29.15 Aligned_cols=36 Identities=19% Similarity=0.264 Sum_probs=29.6
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCC
Q 045267 13 IVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSD 49 (482)
Q Consensus 13 ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~ 49 (482)
+++-.--+.|--.=...++..+... ||+|++++++.
T Consensus 31 ~lIEGd~~tGKSvLsqr~~YG~L~~-g~~v~yvsTe~ 66 (235)
T COG2874 31 ILIEGDNGTGKSVLSQRFAYGFLMN-GYRVTYVSTEL 66 (235)
T ss_pred EEEECCCCccHHHHHHHHHHHHHhC-CceEEEEEech
Confidence 5555556778888889999999887 99999999884
No 317
>PRK11823 DNA repair protein RadA; Provisional
Probab=38.02 E-value=1.4e+02 Score=30.76 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=31.8
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCC
Q 045267 12 HIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSD 49 (482)
Q Consensus 12 ~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~ 49 (482)
-+++...|+.|-..=++.++..+.++ |++|.|++.+.
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~~-g~~vlYvs~Ee 118 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAAA-GGKVLYVSGEE 118 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc-CCeEEEEEccc
Confidence 46777778889999999999999877 99999999764
No 318
>PRK09054 phosphogluconate dehydratase; Validated
Probab=37.79 E-value=2.6e+02 Score=29.86 Aligned_cols=112 Identities=11% Similarity=0.049 Sum_probs=65.2
Q ss_pred hhhhccCCEEEEEcC-----CCCCChHHHHHHHHHHHhcCCCEEEEE-cCCCCCCchhhhhhhhcCCCceeEEEecCCCC
Q 045267 4 TLQAQAAPHIVLLPS-----PGMGHLIPLIEFAKRLVHRHHFLVTFF-IPSDGPPSEAQKSTLESLPSSINSVFLPVSLN 77 (482)
Q Consensus 4 ~~~~~~~~~ili~~~-----~~~GH~~P~l~La~~L~~r~GH~Vt~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 77 (482)
++..++|..|.|+.. |..-|+.-+-.++++-++..|.-...+ ..+. --+
T Consensus 59 ~~~~~~kP~IgIvns~nd~~p~h~~l~~~~~~vk~~v~~aGg~~~~~Gg~pa-------------------------~cD 113 (603)
T PRK09054 59 ALKAMTRPNIGIVTAYNDMLSAHQPYEHYPDIIKEAAREAGAVAQVAGGVPA-------------------------MCD 113 (603)
T ss_pred HHHhcCCCEEEEEeccccCcCccccHHHHHHHHHHHHHHcCCccceeCCCCc-------------------------cCC
Confidence 455778889999886 344566777777777666545544444 2111 012
Q ss_pred CCCcchhhHHHHHHHHHhhhHHHHHHHHHHhhCCCccEEE----eCCCCccHHHHHHHc-CCccEEEccchH
Q 045267 78 DVAEDARAETVISLTVLRSLPCLRQELTSLVAKATVAALV----VDLFGTDAFDVAQEF-NISPYIFYPSTA 144 (482)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~pD~vi----~D~~~~~~~~~A~~l-gIP~v~~~~~~~ 144 (482)
+...+-. .+ ++....-+.+...++..++...+|.+| ||-..++.+.+|-.+ ++|.+.+...+.
T Consensus 114 Git~G~~---GM-~~SL~SRdlIA~sie~~l~~~~fDg~v~lg~CDKivPG~lMaA~r~g~lP~ifV~gGpM 181 (603)
T PRK09054 114 GVTQGQP---GM-ELSLFSRDVIAMSTAVALSHNMFDAALLLGVCDKIVPGLLIGALSFGHLPAIFVPAGPM 181 (603)
T ss_pred CccCCCc---ch-hhhhhhHHHHHHHHHHHhhcCCcceEEEeccCCCCcHHHHHHHHhcCCCCEEEEeCCCc
Confidence 2222111 01 111222334444455555677899876 788788778888899 699888765543
No 319
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=37.76 E-value=1.2e+02 Score=29.59 Aligned_cols=34 Identities=21% Similarity=0.148 Sum_probs=29.2
Q ss_pred EEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCC
Q 045267 14 VLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPS 48 (482)
Q Consensus 14 li~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~ 48 (482)
.=++.|++|-.--.+.|++.|.++ |++|.+++-.
T Consensus 34 GNitvGGTGKTP~v~~La~~l~~~-G~~~~IlSRG 67 (311)
T TIGR00682 34 GNLSVGGTGKTPVVVWLAELLKDR-GLRVGVLSRG 67 (311)
T ss_pred eccccCCcChHHHHHHHHHHHHHC-CCEEEEECCC
Confidence 334568899999999999999888 9999999865
No 320
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=37.71 E-value=41 Score=35.82 Aligned_cols=53 Identities=21% Similarity=0.320 Sum_probs=39.8
Q ss_pred cccccccccccCchhHHHHhh----cCCcEeeccccccchhhHHHHHhhcceeeeeccCCCCccCHHHHHHHHHHHhcC
Q 045267 358 HGSTGGFLCHCGWNSVLESVV----NGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENGIVGRDEIAKVVKALMEG 432 (482)
Q Consensus 358 ~~~~~~~I~HGG~gs~~eal~----~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~vl~~ 432 (482)
.++ ++|+-||-||+..+.. .++|++.+-. |..--..+ ++++++.+++.+++.+
T Consensus 348 ~~d--lvi~lGGDGT~L~aa~~~~~~~~PilGin~-----------------G~lGFL~~---~~~~~~~~~l~~~~~g 404 (569)
T PRK14076 348 EIS--HIISIGGDGTVLRASKLVNGEEIPIICINM-----------------GTVGFLTE---FSKEEIFKAIDSIISG 404 (569)
T ss_pred CCC--EEEEECCcHHHHHHHHHhcCCCCCEEEEcC-----------------CCCCcCcc---cCHHHHHHHHHHHHcC
Confidence 456 9999999999999966 3778887732 32222334 7789999999999876
No 321
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=37.56 E-value=3.5e+02 Score=25.28 Aligned_cols=33 Identities=18% Similarity=0.106 Sum_probs=27.4
Q ss_pred EEEEcC-CCCCChHHHHHHHHHHHhcCCCEEEEEc
Q 045267 13 IVLLPS-PGMGHLIPLIEFAKRLVHRHHFLVTFFI 46 (482)
Q Consensus 13 ili~~~-~~~GH~~P~l~La~~L~~r~GH~Vt~~~ 46 (482)
|+|.+. |+.|-..=...||..|++. |++|..+=
T Consensus 4 iai~s~kGGvG~TTltAnLA~aL~~~-G~~VlaID 37 (243)
T PF06564_consen 4 IAIVSPKGGVGKTTLTANLAWALARL-GESVLAID 37 (243)
T ss_pred EEEecCCCCCCHHHHHHHHHHHHHHC-CCcEEEEe
Confidence 555554 6779999999999999887 99999884
No 322
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 9 GT9 from CAZY comprises enzymes with two known activity; lipopolysaccharide N-acetylglucosaminyltransferase (2.4.1.56 from EC), heptosyltransferase (2.4 from EC). Heptosyltransferase I is thought to add L-glycero-D-manno-heptose to the inner 3-deoxy-D-manno-octulosonic acid (Kdo) residue of the lipopolysaccharide core []. Heptosyltransferase II is a glycosyltransferase involved in the synthesis of the inner core region of lipopolysaccharide []. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. These enzymes transfer heptose to the lipopolysaccharide core [].; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1PSW_A 2H1F_A 2GT1_A 3TOV_A 2H1H_A.
Probab=37.23 E-value=53 Score=30.35 Aligned_cols=99 Identities=11% Similarity=0.054 Sum_probs=50.4
Q ss_pred CCcEEEEeccCC---CCCCHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCcccccCCCCCCCCCCchhHHhhhcCCCeee
Q 045267 270 LGSVLFVSFGSG---GTLSCEQLNELALGLEMSEQRFLWVVRSPNNAANSTFFSVNSHKDPYDFLPKGFLDRTKGRGMLV 346 (482)
Q Consensus 270 ~~~~v~vs~GS~---~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~ 346 (482)
+++.|.+..|+. ...+.+.+.++++.|...+.++++..+... ..+.+-+.+.+......+.+
T Consensus 104 ~~~~i~i~~~a~~~~k~wp~e~~~~l~~~l~~~~~~vvl~g~~~~---------------~~~~~~~~~~~~~~~~~~~~ 168 (247)
T PF01075_consen 104 DKPYIGINPGASWPSKRWPAEKWAELIERLKERGYRVVLLGGPEE---------------QEKEIADQIAAGLQNPVINL 168 (247)
T ss_dssp TSSEEEEE---SSGGGS--HHHHHHHHHHHCCCT-EEEE--SSHH---------------HHHHHHHHHHTTHTTTTEEE
T ss_pred cCCeEEEeecCCCccccCCHHHHHHHHHHHHhhCceEEEEccchH---------------HHHHHHHHHHHhcccceEee
Confidence 355788888775 345778888899988877755443332211 00000000111111112333
Q ss_pred ccccc---hhhhhhcccccccccccCchhHHHHhhcCCcEeec
Q 045267 347 PSWAP---QAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAW 386 (482)
Q Consensus 347 ~~~ip---q~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~ 386 (482)
.+-.+ ...++.+++ ++|+.- -|.++=|.+.|+|+|++
T Consensus 169 ~~~~~l~e~~ali~~a~--~~I~~D-tg~~HlA~a~~~p~v~l 208 (247)
T PF01075_consen 169 AGKTSLRELAALISRAD--LVIGND-TGPMHLAAALGTPTVAL 208 (247)
T ss_dssp TTTS-HHHHHHHHHTSS--EEEEES-SHHHHHHHHTT--EEEE
T ss_pred cCCCCHHHHHHHHhcCC--EEEecC-ChHHHHHHHHhCCEEEE
Confidence 33222 356888899 888654 47889999999999998
No 323
>PRK11914 diacylglycerol kinase; Reviewed
Probab=37.04 E-value=68 Score=30.97 Aligned_cols=26 Identities=15% Similarity=0.222 Sum_probs=22.6
Q ss_pred ccccccCchhHHHHh----hcCCcEeeccc
Q 045267 363 GFLCHCGWNSVLESV----VNGVPLIAWPL 388 (482)
Q Consensus 363 ~~I~HGG~gs~~eal----~~GvP~v~~P~ 388 (482)
++|--||-||+.|++ ..++|+-++|.
T Consensus 67 ~vvv~GGDGTi~evv~~l~~~~~~lgiiP~ 96 (306)
T PRK11914 67 ALVVVGGDGVISNALQVLAGTDIPLGIIPA 96 (306)
T ss_pred EEEEECCchHHHHHhHHhccCCCcEEEEeC
Confidence 788999999999987 34799999995
No 324
>PF06626 DUF1152: Protein of unknown function (DUF1152); InterPro: IPR010581 This family consists of several hypothetical archaeal proteins of unknown function.
Probab=36.55 E-value=83 Score=30.26 Aligned_cols=34 Identities=15% Similarity=0.070 Sum_probs=29.1
Q ss_pred EEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCC
Q 045267 14 VLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPS 48 (482)
Q Consensus 14 li~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~ 48 (482)
+++..|+.|++.-.+.++..|.+. |.++.+.+-.
T Consensus 1 Lv~g~GGGGDvv~a~~l~~~l~~~-G~~~~lg~~~ 34 (297)
T PF06626_consen 1 LVIGIGGGGDVVSALPLAFALRKL-GKEVVLGSVV 34 (297)
T ss_pred CEEEecCcHHHHHHHHHHHHHHhc-CCceEEEEee
Confidence 467789999999999999999776 9999888643
No 325
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=36.49 E-value=65 Score=32.22 Aligned_cols=68 Identities=16% Similarity=0.185 Sum_probs=49.9
Q ss_pred ccccccCchhHHHHhhc-----------------CCcEeeccccccchhhHHHHHhhcceeee-eccCCCCccCHHHHHH
Q 045267 363 GFLCHCGWNSVLESVVN-----------------GVPLIAWPLYAEQKMNAVILTEDVKLALR-PKANENGIVGRDEIAK 424 (482)
Q Consensus 363 ~~I~HGG~gs~~eal~~-----------------GvP~v~~P~~~DQ~~na~rv~~~~G~G~~-l~~~~~~~~~~~~l~~ 424 (482)
.++|.||-.+..-|+.+ +.|.+.++-.. |+-+.+-+.- +|+|++ ++.++++.++.++|++
T Consensus 106 G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~a-H~S~~Kaa~~-lGlg~~~I~~~~~~~md~~~L~~ 183 (373)
T PF00282_consen 106 GVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQA-HYSIEKAARI-LGLGVRKIPTDEDGRMDIEALEK 183 (373)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS--THHHHHHHH-TTSEEEEE-BBTTSSB-HHHHHH
T ss_pred eeEeccchHHHHHHHHHHHHHHhhhhhhccccccccccccccccc-ccHHHHhcce-eeeEEEEecCCcchhhhHHHhhh
Confidence 88999998888777532 34566666544 6888888888 999966 5666677899999999
Q ss_pred HHHHHhcC
Q 045267 425 VVKALMEG 432 (482)
Q Consensus 425 ai~~vl~~ 432 (482)
+|.+..++
T Consensus 184 ~l~~~~~~ 191 (373)
T PF00282_consen 184 ALEKDIAN 191 (373)
T ss_dssp HHHHHHHT
T ss_pred hhcccccc
Confidence 99887655
No 326
>PF05225 HTH_psq: helix-turn-helix, Psq domain; InterPro: IPR007889 This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster []. In pipsqueak this domain binds to GAGA sequence []. The pipsqueak family, which includes proteins from fungi, sea urchins, nematodes, insects, and vertebrates appear to be proteins essential for sequence-specific targeting of a polycomb group protein complex [].; GO: 0003677 DNA binding; PDB: 2COB_A.
Probab=36.14 E-value=59 Score=21.33 Aligned_cols=26 Identities=19% Similarity=0.468 Sum_probs=19.0
Q ss_pred CHHHHHHHHHHHhcCCchHHHHHHHHHH
Q 045267 418 GRDEIAKVVKALMEGEQGKEVRNKMKDL 445 (482)
Q Consensus 418 ~~~~l~~ai~~vl~~~~~~~~r~~a~~l 445 (482)
|+++|..||..+..+. .++++.|+++
T Consensus 1 tee~l~~Ai~~v~~g~--~S~r~AA~~y 26 (45)
T PF05225_consen 1 TEEDLQKAIEAVKNGK--MSIRKAAKKY 26 (45)
T ss_dssp -HHHHHHHHHHHHTTS--S-HHHHHHHH
T ss_pred CHHHHHHHHHHHHhCC--CCHHHHHHHH
Confidence 5789999999998663 3788877764
No 327
>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]
Probab=35.89 E-value=37 Score=30.95 Aligned_cols=31 Identities=13% Similarity=0.338 Sum_probs=22.3
Q ss_pred hhCCCccEEEeCCCCcc-----HHHHHHHcCCccEE
Q 045267 108 VAKATVAALVVDLFGTD-----AFDVAQEFNISPYI 138 (482)
Q Consensus 108 ~~~~~pD~vi~D~~~~~-----~~~~A~~lgIP~v~ 138 (482)
++..+.|.|++...... .-.+|+++|+.++.
T Consensus 82 l~~l~~d~iv~GaI~s~yqk~rve~lc~~lGl~~~~ 117 (223)
T COG2102 82 LRRLKVDGIVAGAIASEYQKERVERLCEELGLKVYA 117 (223)
T ss_pred HHhCcccEEEEchhhhHHHHHHHHHHHHHhCCEEee
Confidence 34458999998775543 23699999999665
No 328
>PRK12448 dihydroxy-acid dehydratase; Provisional
Probab=35.53 E-value=1.8e+02 Score=31.00 Aligned_cols=47 Identities=15% Similarity=0.149 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhhCCCccEEE----eCCCCccHHHHHHHcCCccEEEccchH
Q 045267 98 PCLRQELTSLVAKATVAALV----VDLFGTDAFDVAQEFNISPYIFYPSTA 144 (482)
Q Consensus 98 ~~l~~~l~~~~~~~~pD~vi----~D~~~~~~~~~A~~lgIP~v~~~~~~~ 144 (482)
+.+...++..++...+|.+| ||-..++.+.+|..++||.+++...+.
T Consensus 97 elIAdsiE~~~~a~~~Dg~V~i~~CDK~~PG~lMaaarlniPsi~v~gGpm 147 (615)
T PRK12448 97 ELIADSVEYMVNAHCADAMVCISNCDKITPGMLMAALRLNIPVVFVSGGPM 147 (615)
T ss_pred HHHHHHHHHHhhCCCcceEEEeccCCCchHHHHHHHHhcCCCEEEEeCCCc
Confidence 34455566666677899887 777778788899999999988866543
No 329
>PLN02470 acetolactate synthase
Probab=35.24 E-value=90 Score=33.38 Aligned_cols=91 Identities=14% Similarity=0.153 Sum_probs=51.9
Q ss_pred eccCCCCCC--HHHHHHHHHHHHhcCCceEEEEeCCCCCCCCcccccCCCCCCCCCCchhHHhhh-cCCCeeeccc----
Q 045267 277 SFGSGGTLS--CEQLNELALGLEMSEQRFLWVVRSPNNAANSTFFSVNSHKDPYDFLPKGFLDRT-KGRGMLVPSW---- 349 (482)
Q Consensus 277 s~GS~~~~~--~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~~v~~~~~---- 349 (482)
+|||....+ ....+.+++.|+..|.+.|+-+.+... ..+.+.. ..++++++.-
T Consensus 2 ~~~~~~~~~~~~~~a~~l~~~L~~~GV~~vFg~pG~~~--------------------~~l~dal~~~~~i~~i~~rhE~ 61 (585)
T PLN02470 2 TFQSRFAPDEPRKGADILVEALEREGVDTVFAYPGGAS--------------------MEIHQALTRSNCIRNVLCRHEQ 61 (585)
T ss_pred CcccCCCCCccccHHHHHHHHHHHcCCCEEEEcCCccc--------------------HHHHHHHhccCCceEEEeccHH
Confidence 466643222 233567888999999988888766432 1222222 1123322111
Q ss_pred ----cchhhhhhcccccccccccCch------hHHHHhhcCCcEeecc
Q 045267 350 ----APQAQVLSHGSTGGFLCHCGWN------SVLESVVNGVPLIAWP 387 (482)
Q Consensus 350 ----ipq~~lL~~~~~~~~I~HGG~g------s~~eal~~GvP~v~~P 387 (482)
+-.-.-...-.++++++|.|-| .+.+|...++|||++.
T Consensus 62 ~A~~~Adgyar~tg~~gv~~~t~GPG~~N~l~gia~A~~~~~Pvl~I~ 109 (585)
T PLN02470 62 GEVFAAEGYAKASGKVGVCIATSGPGATNLVTGLADALLDSVPLVAIT 109 (585)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCCccHHHHHHHHHHHHhcCCcEEEEe
Confidence 1111111122355888888855 7889999999999985
No 330
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=35.19 E-value=1.3e+02 Score=31.00 Aligned_cols=37 Identities=22% Similarity=0.382 Sum_probs=31.6
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCC
Q 045267 12 HIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSD 49 (482)
Q Consensus 12 ~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~ 49 (482)
-+++..-|+.|-..=++.++..+.++ |+.|.|++.+.
T Consensus 96 vilI~G~pGsGKTTL~lq~a~~~a~~-g~kvlYvs~EE 132 (454)
T TIGR00416 96 LILIGGDPGIGKSTLLLQVACQLAKN-QMKVLYVSGEE 132 (454)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEECcC
Confidence 36777778889999999999999887 99999998764
No 331
>PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction []. PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A.
Probab=35.09 E-value=1.5e+02 Score=22.37 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=36.2
Q ss_pred ccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhc
Q 045267 416 IVGRDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKWNNN 473 (482)
Q Consensus 416 ~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~~ 473 (482)
...++.+.+.++.++++ +|.+.-..+.+.+. +|-+....+.+|.+.+.+.
T Consensus 2 ~p~~~~i~~i~~~~~~~----~~~~~~~~~~~l~~----~G~s~~~Il~~l~~~l~~~ 51 (89)
T PF08542_consen 2 WPPPEVIEEILESCLNG----DFKEARKKLYELLV----EGYSASDILKQLHEVLVES 51 (89)
T ss_dssp S--HHHHHHHHHHHHHT----CHHHHHHHHHHHHH----TT--HHHHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHH----cCCCHHHHHHHHHHHHHHh
Confidence 46788899888888876 57776666666666 6889989999999988876
No 332
>TIGR02852 spore_dpaB dipicolinic acid synthetase, B subunit. Members of this family represent the B subunit of dipicolinic acid synthetase, an enzyme that synthesizes a small molecule that appears to confer heat stability to bacterial endospores such as those of Bacillus subtilis. The A and B subunits are together in what was originally designated the spoVF locus for stage V of endospore formation.
Probab=34.99 E-value=44 Score=29.79 Aligned_cols=37 Identities=16% Similarity=0.068 Sum_probs=30.7
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCC
Q 045267 12 HIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSD 49 (482)
Q Consensus 12 ~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~ 49 (482)
||++.-.|+.|-+.-.+.+.++|.+. |++|+++.++.
T Consensus 2 ~I~lgITGs~~a~~a~~~ll~~L~~~-g~~V~vI~S~~ 38 (187)
T TIGR02852 2 RIGFGLTGSHCTLEAVMPQLEKLVDE-GAEVTPIVSET 38 (187)
T ss_pred EEEEEEecHHHHHHHHHHHHHHHHhC-cCEEEEEEchh
Confidence 57777778888777778999999887 99999987663
No 333
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=34.97 E-value=3.2e+02 Score=24.05 Aligned_cols=33 Identities=18% Similarity=0.176 Sum_probs=29.0
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEE
Q 045267 12 HIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFF 45 (482)
Q Consensus 12 ~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~ 45 (482)
-|.+++..+.|-..-.+.+|-..+.+ |++|.++
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~-g~~v~iv 39 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGH-GKKVGVI 39 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHC-CCeEEEE
Confidence 48888889999999999999999887 9999655
No 334
>TIGR02699 archaeo_AfpA archaeoflavoprotein AfpA. The prototypical member of this archaeal protein family is AF1518 from Archaeoglobus fulgidus. This homodimer with two non-covalently bound FMN cofactors can receive electrons from ferredoxin, but not from a number of other electron donors such as NADH or rubredoxin. It can then donate electrons to various reductases.
Probab=34.96 E-value=47 Score=29.25 Aligned_cols=36 Identities=17% Similarity=0.203 Sum_probs=27.4
Q ss_pred EEEEcCCCCCChHH-HHHHHHHHHhcCCCEEEEEcCCC
Q 045267 13 IVLLPSPGMGHLIP-LIEFAKRLVHRHHFLVTFFIPSD 49 (482)
Q Consensus 13 ili~~~~~~GH~~P-~l~La~~L~~r~GH~Vt~~~~~~ 49 (482)
|++.-.|+ ||... ...+.+.|.+++||+|.++.++.
T Consensus 2 i~~gitGs-g~~l~e~v~~l~~L~~~~g~eV~vv~S~~ 38 (174)
T TIGR02699 2 IAWGITGS-GDKLPETYSIMKDVKNRYGDEIDVFLSKA 38 (174)
T ss_pred EEEEEEcc-HHHHHHHHHHHHHHHHhcCCEEEEEECHh
Confidence 44444444 77766 88999999866699999998874
No 335
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=34.95 E-value=89 Score=28.43 Aligned_cols=38 Identities=16% Similarity=-0.031 Sum_probs=25.0
Q ss_pred hhccCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCC
Q 045267 6 QAQAAPHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPS 48 (482)
Q Consensus 6 ~~~~~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~ 48 (482)
..|+.++|+|. |+.|++- ..|++.|.++ ||+|+.++..
T Consensus 2 ~~~~~~~vlIt--Gasg~iG--~~l~~~l~~~-g~~v~~~~~~ 39 (249)
T PRK12825 2 GSLMGRVALVT--GAARGLG--RAIALRLARA-GADVVVHYRS 39 (249)
T ss_pred CCCCCCEEEEe--CCCchHH--HHHHHHHHHC-CCeEEEEeCC
Confidence 34555566664 4455543 5678888888 9999776644
No 336
>PF00862 Sucrose_synth: Sucrose synthase; InterPro: IPR000368 Sucrose synthases catalyse the synthesis of sucrose 2.4.1.13 from EC in the following reaction: UDP-glucose + D-fructose = UDP + sucrose This family includes the bulk of the sucrose synthase protein. However the carboxyl terminal region of the sucrose synthases belongs to the glycosyl transferase family IPR001296 from INTERPRO. This enzyme is found mainly in plants but also appears in bacteria.; GO: 0005985 sucrose metabolic process; PDB: 2R60_A 2R66_A 2R68_A 3S27_G 3S29_A 3S28_A.
Probab=34.87 E-value=78 Score=32.76 Aligned_cols=121 Identities=8% Similarity=0.073 Sum_probs=53.5
Q ss_pred CCChHHHHHHHHHHHhc-------CCC----EEEEEcCC-CCCCchhhhhhhhcC--CCceeEEEecCCCC-CCCcchhh
Q 045267 21 MGHLIPLIEFAKRLVHR-------HHF----LVTFFIPS-DGPPSEAQKSTLESL--PSSINSVFLPVSLN-DVAEDARA 85 (482)
Q Consensus 21 ~GH~~P~l~La~~L~~r-------~GH----~Vt~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~-~~~~~~~~ 85 (482)
.|.+-=.+.++++|.+. .|- +|.++|-- +...-+......+.+ ..+.....+|+..+ +....+-.
T Consensus 296 GGQVvYVleqarALe~e~~~ri~~~gl~i~p~i~i~TRlIpd~~~t~~~q~le~~~gt~~a~IlRvPF~~~~gi~~kwis 375 (550)
T PF00862_consen 296 GGQVVYVLEQARALENEMLYRIKLQGLDITPKIDIVTRLIPDAKGTTCNQRLEKVSGTENARILRVPFGPEKGILRKWIS 375 (550)
T ss_dssp SHHHHHHHHHHHHHHHHTHHHHHHTT-----EEEEEEE--TBTTCGGGTSSEEEETTESSEEEEEE-ESESTEEE-S---
T ss_pred CCcEEEEeHHHHHHHHHHHHHHHhcCCCCCCceeeecccccCCcCCCccccccccCCCCCcEEEEecCCCCcchhhhccc
Confidence 35566678888888542 143 46666621 111111222223322 23566777774332 21122211
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHhhCCCccEEEeCCC--CccHHHHHHHcCCccEEEccc
Q 045267 86 ETVISLTVLRSLPCLRQELTSLVAKATVAALVVDLF--GTDAFDVAQEFNISPYIFYPS 142 (482)
Q Consensus 86 ~~~~~~~~~~~~~~l~~~l~~~~~~~~pD~vi~D~~--~~~~~~~A~~lgIP~v~~~~~ 142 (482)
...+..++..........+...+ ..+||+|+.... ...|..+++++|||.+.+..+
T Consensus 376 rf~lWPyLe~fa~d~~~~i~~e~-~~~PdlI~GnYsDgnlvA~LLs~~lgv~~~~iaHs 433 (550)
T PF00862_consen 376 RFDLWPYLEEFADDAEREILAEL-QGKPDLIIGNYSDGNLVASLLSRKLGVTQCFIAHS 433 (550)
T ss_dssp GGG-GGGHHHHHHHHHHHHHHHH-TS--SEEEEEHHHHHHHHHHHHHHHT-EEEEE-SS
T ss_pred hhhchhhHHHHHHHHHHHHHHHh-CCCCcEEEeccCcchHHHHHHHhhcCCceehhhhc
Confidence 22222222222222222222211 358999996652 234668999999997765543
No 337
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=34.84 E-value=67 Score=30.21 Aligned_cols=38 Identities=26% Similarity=0.443 Sum_probs=33.2
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCC
Q 045267 10 APHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPS 48 (482)
Q Consensus 10 ~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~ 48 (482)
...++|+..++.|-..=..+||.+|.++ |+.|+|++.+
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~-g~sv~f~~~~ 142 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKA-GISVLFITAP 142 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEEEHH
Confidence 3469999999999999999999999966 9999999755
No 338
>PRK10490 sensor protein KdpD; Provisional
Probab=34.80 E-value=1.1e+02 Score=34.69 Aligned_cols=40 Identities=18% Similarity=0.188 Sum_probs=35.0
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCC
Q 045267 10 APHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDG 50 (482)
Q Consensus 10 ~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~ 50 (482)
++||.+=..|+-|-.+.||.-|++|.++ |++|.+..-+.+
T Consensus 24 ~l~i~~g~~~gvgkt~~ml~~a~~~~~~-g~dvv~g~~e~h 63 (895)
T PRK10490 24 KLKIFFGACAGVGKTYAMLQEAQRLRAQ-GLDVLVGVVETH 63 (895)
T ss_pred cEEEEeecCCCCCHHHHHHHHHHHHHhC-CCcEEEEEeeCC
Confidence 4688888889999999999999999998 999998876644
No 339
>COG3660 Predicted nucleoside-diphosphate-sugar epimerase [Cell envelope biogenesis, outer membrane]
Probab=34.53 E-value=3e+02 Score=26.07 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=29.7
Q ss_pred cccchhhhhhcccccccccccCchhHHHHhhcCCcEeec
Q 045267 348 SWAPQAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAW 386 (482)
Q Consensus 348 ~~ipq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~ 386 (482)
++=|+.++|+.++- .++|---.|..+||++.|+|+.++
T Consensus 234 g~NPY~~~La~Ady-ii~TaDSinM~sEAasTgkPv~~~ 271 (329)
T COG3660 234 GYNPYIDMLAAADY-IISTADSINMCSEAASTGKPVFIL 271 (329)
T ss_pred CCCchHHHHhhcce-EEEecchhhhhHHHhccCCCeEEE
Confidence 45589999999882 344555678899999999999663
No 340
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=34.47 E-value=64 Score=29.68 Aligned_cols=36 Identities=11% Similarity=-0.001 Sum_probs=22.5
Q ss_pred hhCCCccEEEeCCCC--ccHHHHHHHc----CCccEEEccch
Q 045267 108 VAKATVAALVVDLFG--TDAFDVAQEF----NISPYIFYPST 143 (482)
Q Consensus 108 ~~~~~pD~vi~D~~~--~~~~~~A~~l----gIP~v~~~~~~ 143 (482)
++.++||++|+-.-. ..++..|+++ |||+++++-.+
T Consensus 56 ~~~~~pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p 97 (277)
T PRK00994 56 LEEWKPDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAP 97 (277)
T ss_pred HHhhCCCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCC
Confidence 345699998854422 2344555554 99999865543
No 341
>COG2861 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=34.36 E-value=34 Score=31.53 Aligned_cols=39 Identities=10% Similarity=0.060 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHhhCCCccEEEeCCCCccH---HHHHHHcCCccEE
Q 045267 97 LPCLRQELTSLVAKATVAALVVDLFGTDA---FDVAQEFNISPYI 138 (482)
Q Consensus 97 ~~~l~~~l~~~~~~~~pD~vi~D~~~~~~---~~~A~~lgIP~v~ 138 (482)
.+.++..++++ .+-++.+.|..+.+. ..+|.+.|||++.
T Consensus 137 ~~aM~~~m~~L---k~r~l~flDs~T~a~S~a~~iAk~~gVp~~~ 178 (250)
T COG2861 137 EDAMEKLMEAL---KERGLYFLDSGTIANSLAGKIAKEIGVPVIK 178 (250)
T ss_pred HHHHHHHHHHH---HHCCeEEEcccccccchhhhhHhhcCCceee
Confidence 33444444443 267899999977763 4789999999764
No 342
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=34.01 E-value=52 Score=28.34 Aligned_cols=36 Identities=17% Similarity=0.154 Sum_probs=27.7
Q ss_pred hccCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCC
Q 045267 7 AQAAPHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPS 48 (482)
Q Consensus 7 ~~~~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~ 48 (482)
+++.++|+++..|..| ...++.|.+. ||+|+++.++
T Consensus 10 ~l~~~~vlVvGGG~va-----~rka~~Ll~~-ga~V~VIsp~ 45 (157)
T PRK06719 10 NLHNKVVVIIGGGKIA-----YRKASGLKDT-GAFVTVVSPE 45 (157)
T ss_pred EcCCCEEEEECCCHHH-----HHHHHHHHhC-CCEEEEEcCc
Confidence 3455688888877554 6788889887 9999999654
No 343
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=33.19 E-value=58 Score=28.57 Aligned_cols=31 Identities=6% Similarity=-0.068 Sum_probs=21.2
Q ss_pred CCCccEEEeCCCCcc--HHHHHHHcCCccEEEc
Q 045267 110 KATVAALVVDLFGTD--AFDVAQEFNISPYIFY 140 (482)
Q Consensus 110 ~~~pD~vi~D~~~~~--~~~~A~~lgIP~v~~~ 140 (482)
..+||+||....... ....-++.|||++.+.
T Consensus 67 ~l~PDlii~~~~~~~~~~~~~l~~~gIpvv~i~ 99 (186)
T cd01141 67 ALKPDLVILYGGFQAQTILDKLEQLGIPVLYVN 99 (186)
T ss_pred ccCCCEEEEecCCCchhHHHHHHHcCCCEEEeC
Confidence 359999998654333 3345577899987764
No 344
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]
Probab=32.98 E-value=2.1e+02 Score=27.96 Aligned_cols=106 Identities=16% Similarity=0.185 Sum_probs=63.3
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHhcC-CCEEEEEcCCCCCCchhhhhhhhcCCCceeEEEecCCCCCCCcchhhHHH
Q 045267 10 APHIVLLPSPGMGHLIPLIEFAKRLVHRH-HFLVTFFIPSDGPPSEAQKSTLESLPSSINSVFLPVSLNDVAEDARAETV 88 (482)
Q Consensus 10 ~~~ili~~~~~~GH~~P~l~La~~L~~r~-GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 88 (482)
+|+|+++-....|++.=.+++-+.|++++ +.++++++.+...+ +.+..+. ++-... . .. .+..
T Consensus 1 ~~kIliir~~~iGD~vlt~p~~~~lk~~~P~a~i~~~~~~~~~~------i~~~~p~-I~~vi~-~--~~--~~~~---- 64 (334)
T COG0859 1 MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAP------ILKLNPE-IDKVII-I--DK--KKKG---- 64 (334)
T ss_pred CceEEEEeccchhHHHhHHHHHHHHHHHCCCCEEEEEeccchHH------HHhcChH-hhhhcc-c--cc--cccc----
Confidence 36799999999999999999999998873 38999999884333 3332222 110000 0 00 1110
Q ss_pred HHHHHHhhhHHHHHHHHHHhhCCCccEEEeCCCCccHHHHHHHcCCccEE
Q 045267 89 ISLTVLRSLPCLRQELTSLVAKATVAALVVDLFGTDAFDVAQEFNISPYI 138 (482)
Q Consensus 89 ~~~~~~~~~~~l~~~l~~~~~~~~pD~vi~D~~~~~~~~~A~~lgIP~v~ 138 (482)
........+...+ +..++|+||.=.-.+=...++...++|.-+
T Consensus 65 ---~~~~~~~~l~~~l----r~~~yD~vidl~~~~ksa~l~~~~~~~~r~ 107 (334)
T COG0859 65 ---LGLKERLALLRTL----RKERYDAVIDLQGLLKSALLALLLGIPFRI 107 (334)
T ss_pred ---cchHHHHHHHHHh----hccCCCEEEECcccHHHHHHHHHhCCCccc
Confidence 0011112222333 345899999776555566777788888544
No 345
>COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
Probab=32.92 E-value=3.7e+02 Score=25.74 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=16.0
Q ss_pred HHHHHHHhcCCCEEEEEcCCC
Q 045267 29 EFAKRLVHRHHFLVTFFIPSD 49 (482)
Q Consensus 29 ~La~~L~~r~GH~Vt~~~~~~ 49 (482)
+|...|.+. ||+|++++-..
T Consensus 13 ~L~~~L~~~-gh~v~iltR~~ 32 (297)
T COG1090 13 ALTARLRKG-GHQVTILTRRP 32 (297)
T ss_pred HHHHHHHhC-CCeEEEEEcCC
Confidence 577888776 99999999543
No 346
>cd01980 Chlide_reductase_Y Chlide_reductase_Y : Y subunit of chlorophyllide (chlide) reductase (BchY). Chlide reductase participates in photosynthetic pigment synthesis playing a role in the conversion of chlorophylls(Chl) into bacteriochlorophylls (BChl). Chlide reductase catalyzes the reduction of the B-ring of the tetrapyrolle. Chlide reductase is a three subunit enzyme (subunits are designated BchX, BchY and BchZ). The similarity between these three subunits and the subunits for nitrogenase suggests that BchX serves as an electron donor for the BchY-BchY catalytic subunits.
Probab=32.66 E-value=3.4e+02 Score=27.58 Aligned_cols=29 Identities=10% Similarity=0.032 Sum_probs=22.5
Q ss_pred hCCCccEEEeCCCCccHHHHHHHcCCccEEEc
Q 045267 109 AKATVAALVVDLFGTDAFDVAQEFNISPYIFY 140 (482)
Q Consensus 109 ~~~~pD~vi~D~~~~~~~~~A~~lgIP~v~~~ 140 (482)
+..+||++|... .+..+|+++|||.+.+.
T Consensus 347 ~~~~pDl~Ig~s---~~~~~a~~~giP~~r~~ 375 (416)
T cd01980 347 EEYRPDLAIGTT---PLVQYAKEKGIPALYYT 375 (416)
T ss_pred hhcCCCEEEeCC---hhhHHHHHhCCCEEEec
Confidence 345999999874 26679999999987643
No 347
>COG3563 KpsC Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=32.63 E-value=2.3e+02 Score=29.20 Aligned_cols=149 Identities=17% Similarity=0.220 Sum_probs=80.8
Q ss_pred CHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCcccccCCCCCCCCCCchhHHhhh-cCCCe--eeccccchhhhhhccc-
Q 045267 285 SCEQLNELALGLEMSEQRFLWVVRSPNNAANSTFFSVNSHKDPYDFLPKGFLDRT-KGRGM--LVPSWAPQAQVLSHGS- 360 (482)
Q Consensus 285 ~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~~v--~~~~~ipq~~lL~~~~- 360 (482)
....+..+-.|+...+..-||+-..+.. ++|-- +++.... ..+.+ ...+|=|- .+|.+-+
T Consensus 165 ~~~~l~m~~~ai~enp~a~i~~kthpdv------l~gkk---------qg~lt~~~~~~r~~ll~edfnpi-sll~~~dk 228 (671)
T COG3563 165 ASTFLLMFQTAINENPQADIWVKTHPDV------LCGKK---------QGYLTQLSQQHRVHLLAEDFNPI-SLLQNVDK 228 (671)
T ss_pred hhHHHHHHHHHHhcCCcccEEEEeCCch------hcCcc---------cchhhhhccCceEEEecccCChH-HHHHhcce
Confidence 4555667888999999988998654321 11110 1222222 22222 33455443 3455443
Q ss_pred ccccccccCchhHHHHhhcCCcEeeccccccchhhHHHHHhhcceeeeeccCCCCccCHHHHHHHHHHHhcCCchHHHHH
Q 045267 361 TGGFLCHCGWNSVLESVVNGVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENGIVGRDEIAKVVKALMEGEQGKEVRN 440 (482)
Q Consensus 361 ~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~vl~~~~~~~~r~ 440 (482)
|=++-+|-| .|||.+|+|.+++...+ . .|.|+.-++-+ -+...-.+.+.++. .+
T Consensus 229 vy~~ts~mg----feall~~~~~~~fg~p~----------y-agwgltddrl~---~~~r~akrsl~qlf--------ya 282 (671)
T COG3563 229 VYCVTSQMG----FEALLCGKPLTTFGLPW----------Y-AGWGLTDDRLE---QTQRRAKRSLLQLF--------YA 282 (671)
T ss_pred eEEeecccc----HHHHhcCCceeeecchh----------h-cccCcchhHHH---HHHhhhhhhHHHHH--------HH
Confidence 225556666 59999999999976532 3 56666554433 33333344444443 23
Q ss_pred HHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhccC
Q 045267 441 KMKDLKDAAAAVLSENGSSTKALSQLASKWNNNEG 475 (482)
Q Consensus 441 ~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~ 475 (482)
+=-..++-+.-...+.|+-.+.+|-|++.-+....
T Consensus 283 ay~~y~ry~np~~~~~~~lfd~id~lat~k~~~~~ 317 (671)
T COG3563 283 AYLQYSRYLNPNTGEAGSLFDVIDYLATVKRKNDK 317 (671)
T ss_pred HHHHHHHhcCCCccccchHHHHHHHHHHHhccccC
Confidence 33334444444444667777888888775544443
No 348
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=32.37 E-value=54 Score=29.10 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=29.5
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCC
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSD 49 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~ 49 (482)
+||++...|+.|=.. ...+.+.|.++ |++|.++.++.
T Consensus 2 k~Ill~vtGsiaa~~-~~~li~~L~~~-g~~V~vv~T~~ 38 (182)
T PRK07313 2 KNILLAVSGSIAAYK-AADLTSQLTKR-GYQVTVLMTKA 38 (182)
T ss_pred CEEEEEEeChHHHHH-HHHHHHHHHHC-CCEEEEEEChh
Confidence 457777777766665 79999999887 99999998774
No 349
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=32.02 E-value=3.4e+02 Score=26.48 Aligned_cols=40 Identities=13% Similarity=0.060 Sum_probs=33.7
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCC
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGP 51 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~ 51 (482)
..|+++..++.|-..-+..||..|..+ |++|.+++.+.+.
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~~l~~~-g~~V~Li~~D~~r 154 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAHKYKAQ-GKKVLLAAGDTFR 154 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhc-CCeEEEEecCccc
Confidence 457777777889999999999999877 9999999877543
No 350
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=32.01 E-value=64 Score=32.51 Aligned_cols=35 Identities=29% Similarity=0.477 Sum_probs=31.2
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCC
Q 045267 13 IVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSD 49 (482)
Q Consensus 13 ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~ 49 (482)
|+|-.-|+-|--.=+|.++..|+++ | +|.|++.+.
T Consensus 96 iLIgGdPGIGKSTLLLQva~~lA~~-~-~vLYVsGEE 130 (456)
T COG1066 96 ILIGGDPGIGKSTLLLQVAARLAKR-G-KVLYVSGEE 130 (456)
T ss_pred EEEccCCCCCHHHHHHHHHHHHHhc-C-cEEEEeCCc
Confidence 6777778999999999999999988 8 999999874
No 351
>KOG3125 consensus Thymidine kinase [Nucleotide transport and metabolism]
Probab=31.69 E-value=2.5e+02 Score=25.24 Aligned_cols=95 Identities=11% Similarity=0.039 Sum_probs=58.1
Q ss_pred CcEEEEeccCCCCCCHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCcccccCCCCCCCCCCchhHHhhhcCCCeeecccc
Q 045267 271 GSVLFVSFGSGGTLSCEQLNELALGLEMSEQRFLWVVRSPNNAANSTFFSVNSHKDPYDFLPKGFLDRTKGRGMLVPSWA 350 (482)
Q Consensus 271 ~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~~i 350 (482)
++.|-|=+|-|.+.....+...++.....+++++.+-....+. .
T Consensus 26 ~G~i~vI~gPMfSGKTt~LLrr~r~~~~~grrv~liK~~kDTR--------------------------------y---- 69 (234)
T KOG3125|consen 26 RGTIHVILGPMFSGKTTELLRRIRREIIAGRRVLLIKYAKDTR--------------------------------Y---- 69 (234)
T ss_pred CceEEEEeccccCcchHHHHHHHHHHHhcCceEEEEEecCCcc--------------------------------c----
Confidence 4578888999876665554444444445677766554332211 0
Q ss_pred chhhhhhcccccccccccCchhHHH--------------HhhcCCcEeecc---ccccchhhHHHHHhhcceeeeec
Q 045267 351 PQAQVLSHGSTGGFLCHCGWNSVLE--------------SVVNGVPLIAWP---LYAEQKMNAVILTEDVKLALRPK 410 (482)
Q Consensus 351 pq~~lL~~~~~~~~I~HGG~gs~~e--------------al~~GvP~v~~P---~~~DQ~~na~rv~~~~G~G~~l~ 410 (482)
.++ .++||.|..-.++ ++...|-+|.|- +++||...++.+.+.+|.=+.+.
T Consensus 70 -------~~~--si~Thdg~~~~c~~lp~a~~~s~f~~d~~~~~vdVigIDEaQFf~dl~efc~evAd~~Gk~Viva 137 (234)
T KOG3125|consen 70 -------ESS--SIVTHDGIEMPCWALPDASFLSEFGKDALNGDVDVIGIDEAQFFGDLYEFCREVADVHGKTVIVA 137 (234)
T ss_pred -------chh--eeEeccCCcccccccCCchhHHHHHHHHhcCcceEEEecHHHHhHHHHHHHHHHHhccCCEEEEE
Confidence 123 7788888754333 333456777776 57799999999888667655543
No 352
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=31.66 E-value=4.5e+02 Score=24.82 Aligned_cols=37 Identities=11% Similarity=0.008 Sum_probs=27.6
Q ss_pred ccCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCC
Q 045267 8 QAAPHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPS 48 (482)
Q Consensus 8 ~~~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~ 48 (482)
|.++||+++.+++...-. ....+|.++ |.+|.++...
T Consensus 1 ~~~~kvaVl~~pG~n~d~---e~~~Al~~a-G~~v~~v~~~ 37 (261)
T PRK01175 1 MESIRVAVLRMEGTNCED---ETVKAFRRL-GVEPEYVHIN 37 (261)
T ss_pred CCCCEEEEEeCCCCCCHH---HHHHHHHHC-CCcEEEEeec
Confidence 456789999998875443 557888776 9999988754
No 353
>COG2159 Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]
Probab=31.60 E-value=1.9e+02 Score=27.87 Aligned_cols=28 Identities=7% Similarity=-0.204 Sum_probs=21.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCceEEEEeC
Q 045267 282 GTLSCEQLNELALGLEMSEQRFLWVVRS 309 (482)
Q Consensus 282 ~~~~~~~~~~~~~al~~~~~~~i~~~~~ 309 (482)
...+...+..+.++.+.+|..+++-++.
T Consensus 139 ~~~~~~~~~pi~~~a~~~gvpv~ihtG~ 166 (293)
T COG2159 139 FYPDDPRLYPIYEAAEELGVPVVIHTGA 166 (293)
T ss_pred CCCCChHHHHHHHHHHHcCCCEEEEeCC
Confidence 3445555788999999999999886554
No 354
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=31.37 E-value=57 Score=30.70 Aligned_cols=39 Identities=21% Similarity=0.197 Sum_probs=31.0
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCC
Q 045267 10 APHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSD 49 (482)
Q Consensus 10 ~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~ 49 (482)
..+|.|...|+.|-=.=.-.|++.|.++ ||+|-+++-++
T Consensus 29 a~~iGiTG~PGaGKSTli~~l~~~~~~~-g~~VaVlAVDP 67 (266)
T PF03308_consen 29 AHVIGITGPPGAGKSTLIDALIRELRER-GKRVAVLAVDP 67 (266)
T ss_dssp SEEEEEEE-TTSSHHHHHHHHHHHHHHT-T--EEEEEE-G
T ss_pred ceEEEeeCCCCCcHHHHHHHHHHHHhhc-CCceEEEEECC
Confidence 3579999999999999999999999988 99999998654
No 355
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=31.20 E-value=64 Score=29.33 Aligned_cols=36 Identities=28% Similarity=0.295 Sum_probs=31.3
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCC
Q 045267 12 HIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPS 48 (482)
Q Consensus 12 ~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~ 48 (482)
-|++...|+.|-..-.-.||++|.++ +|+|.-.+..
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~-i~~vi~l~kd 38 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQE-IWRVIHLEKD 38 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHh-hhhccccchh
Confidence 47777889999999999999999888 9999888643
No 356
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=30.99 E-value=1.3e+02 Score=27.88 Aligned_cols=41 Identities=15% Similarity=0.063 Sum_probs=37.2
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCC
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPP 52 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 52 (482)
++|+|+.=|+-|--.-.-.++.+|++. ||+|..+..++..+
T Consensus 2 r~iAiYGKGGIGKSTts~N~aAAla~~-GkkVl~vGCDPKaD 42 (278)
T COG1348 2 RQIAIYGKGGIGKSTTSQNLAAALAEL-GKKVLIVGCDPKAD 42 (278)
T ss_pred ceEEEecCCCcCcchhHHHHHHHHHHc-CCeEEEEcCCCCcc
Confidence 469999999999999999999999998 99999999887666
No 357
>PRK14477 bifunctional nitrogenase molybdenum-cofactor biosynthesis protein NifE/NifN; Provisional
Probab=30.81 E-value=3.1e+02 Score=31.28 Aligned_cols=31 Identities=6% Similarity=-0.190 Sum_probs=23.5
Q ss_pred hhCCCccEEEeCCCCccHHHHHHHcCCccEEEcc
Q 045267 108 VAKATVAALVVDLFGTDAFDVAQEFNISPYIFYP 141 (482)
Q Consensus 108 ~~~~~pD~vi~D~~~~~~~~~A~~lgIP~v~~~~ 141 (482)
+++.+||++|.... ...+|+++|||++-...
T Consensus 385 i~~~~pDLlig~~~---~~~~a~k~giP~~~~~~ 415 (917)
T PRK14477 385 MREKMPDLIVAGGK---TKFLALKTRTPFLDINH 415 (917)
T ss_pred HHhcCCCEEEecCc---hhhHHHHcCCCeEEccC
Confidence 34459999998653 45689999999996653
No 358
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=30.68 E-value=2.1e+02 Score=30.62 Aligned_cols=27 Identities=19% Similarity=0.319 Sum_probs=22.3
Q ss_pred ccccccccCch------hHHHHhhcCCcEeecc
Q 045267 361 TGGFLCHCGWN------SVLESVVNGVPLIAWP 387 (482)
Q Consensus 361 ~~~~I~HGG~g------s~~eal~~GvP~v~~P 387 (482)
.+++++|.|-| .+.+|...++|+|++.
T Consensus 64 ~gv~~~t~GPG~~n~l~~i~~A~~~~~Pvl~I~ 96 (586)
T PRK06276 64 VGVCVATSGPGATNLVTGIATAYADSSPVIALT 96 (586)
T ss_pred CEEEEECCCccHHHHHHHHHHHHhcCCCEEEEe
Confidence 44888888754 7899999999999984
No 359
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=30.48 E-value=75 Score=28.84 Aligned_cols=33 Identities=18% Similarity=0.153 Sum_probs=24.7
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCC
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSD 49 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~ 49 (482)
|+++|...|-.| -.||..|.+. ||+|++.+...
T Consensus 2 ~~~~i~GtGniG-----~alA~~~a~a-g~eV~igs~r~ 34 (211)
T COG2085 2 MIIAIIGTGNIG-----SALALRLAKA-GHEVIIGSSRG 34 (211)
T ss_pred cEEEEeccChHH-----HHHHHHHHhC-CCeEEEecCCC
Confidence 557776655555 4688899888 99999997654
No 360
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=30.24 E-value=52 Score=31.54 Aligned_cols=31 Identities=23% Similarity=0.231 Sum_probs=25.4
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcC
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIP 47 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~ 47 (482)
|+|+|+..|+.| ..+|..|.+. ||+|+++..
T Consensus 1 m~I~IiG~G~~G-----~~~a~~L~~~-g~~V~~~~r 31 (304)
T PRK06522 1 MKIAILGAGAIG-----GLFGAALAQA-GHDVTLVAR 31 (304)
T ss_pred CEEEEECCCHHH-----HHHHHHHHhC-CCeEEEEEC
Confidence 468999888877 4577888877 999999985
No 361
>cd01715 ETF_alpha The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin.
Probab=30.14 E-value=1.1e+02 Score=26.59 Aligned_cols=39 Identities=15% Similarity=0.113 Sum_probs=26.9
Q ss_pred HHHHHHHhhCCCccEEEeCCCCcc---HHHHHHHcCCccEEE
Q 045267 101 RQELTSLVAKATVAALVVDLFGTD---AFDVAQEFNISPYIF 139 (482)
Q Consensus 101 ~~~l~~~~~~~~pD~vi~D~~~~~---~~~~A~~lgIP~v~~ 139 (482)
.+.+.+++++.+||+|+......+ +..+|.++|.|++.-
T Consensus 72 a~al~~~i~~~~p~~Vl~~~t~~g~~la~rlAa~L~~~~vtd 113 (168)
T cd01715 72 APALVALAKKEKPSHILAGATSFGKDLAPRVAAKLDVGLISD 113 (168)
T ss_pred HHHHHHHHHhcCCCEEEECCCccccchHHHHHHHhCCCceee
Confidence 333444445568999997764443 557999999997763
No 362
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=30.01 E-value=90 Score=29.96 Aligned_cols=38 Identities=13% Similarity=0.054 Sum_probs=33.5
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCC
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSD 49 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~ 49 (482)
|+|+++.=|+-|-..-...||.+|+++ |++|.++=.++
T Consensus 1 m~ia~~gKGGVGKTTta~nLA~~La~~-G~rVLlID~Dp 38 (290)
T CHL00072 1 MKLAVYGKGGIGKSTTSCNISIALARR-GKKVLQIGCDP 38 (290)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHC-CCeEEEEeccC
Confidence 468999999999999999999999988 99999986543
No 363
>COG2210 Peroxiredoxin family protein [General function prediction only]
Probab=30.00 E-value=86 Score=26.27 Aligned_cols=34 Identities=18% Similarity=0.197 Sum_probs=28.6
Q ss_pred EEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcC
Q 045267 13 IVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIP 47 (482)
Q Consensus 13 ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~ 47 (482)
-+++.++..--++|.+-++...+.. |++|+++.+
T Consensus 6 ~IIl~SG~~dk~~~a~iias~A~A~-G~EV~VF~T 39 (137)
T COG2210 6 GIILASGTLDKAYAALIIASGAAAM-GYEVTVFFT 39 (137)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHc-CCeEEEEEe
Confidence 3455567889999999999999888 999999965
No 364
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=29.92 E-value=4e+02 Score=23.67 Aligned_cols=37 Identities=14% Similarity=0.112 Sum_probs=32.2
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCC
Q 045267 12 HIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSD 49 (482)
Q Consensus 12 ~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~ 49 (482)
-+.++..++.|=..=.+.++....++ |..|.|++.+.
T Consensus 14 i~~i~G~~GsGKT~l~~~~~~~~~~~-g~~v~yi~~e~ 50 (209)
T TIGR02237 14 ITQIYGPPGSGKTNICMILAVNAARQ-GKKVVYIDTEG 50 (209)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCC
Confidence 46777778889999999999999877 99999999875
No 365
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=29.89 E-value=4.2e+02 Score=25.36 Aligned_cols=108 Identities=16% Similarity=0.062 Sum_probs=0.0
Q ss_pred cCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCCchhhhhhhhcCCCceeEEEecCCCCCCCcchhhHHH
Q 045267 9 AAPHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPPSEAQKSTLESLPSSINSVFLPVSLNDVAEDARAETV 88 (482)
Q Consensus 9 ~~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 88 (482)
+++||+++.+|..+.+..++.-.+.= +- +++|..+.+... ..+.+.... |+.+..++.....
T Consensus 88 ~~~ri~vl~Sg~gsnl~al~~~~~~~-~~-~~~i~~visn~~----~~~~lA~~~--gIp~~~~~~~~~~---------- 149 (286)
T PRK06027 88 ERKRVVILVSKEDHCLGDLLWRWRSG-EL-PVEIAAVISNHD----DLRSLVERF--GIPFHHVPVTKET---------- 149 (286)
T ss_pred cCcEEEEEEcCCCCCHHHHHHHHHcC-CC-CcEEEEEEEcCh----hHHHHHHHh--CCCEEEeccCccc----------
Q ss_pred HHHHHHhhhHHHHHHHHHHhhCCCccEEE-eCCCCccHHHHHHHcCCccEEEccc
Q 045267 89 ISLTVLRSLPCLRQELTSLVAKATVAALV-VDLFGTDAFDVAQEFNISPYIFYPS 142 (482)
Q Consensus 89 ~~~~~~~~~~~l~~~l~~~~~~~~pD~vi-~D~~~~~~~~~A~~lgIP~v~~~~~ 142 (482)
.......+.+++++.+||+|| +.++..-...+-+...-.++-++|+
T Consensus 150 --------~~~~~~~~~~~l~~~~~Dlivlagy~~il~~~~l~~~~~~iiNiHpS 196 (286)
T PRK06027 150 --------KAEAEARLLELIDEYQPDLVVLARYMQILSPDFVARFPGRIINIHHS 196 (286)
T ss_pred --------cchhHHHHHHHHHHhCCCEEEEecchhhcCHHHHhhccCCceecCcc
No 366
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=29.85 E-value=1.5e+02 Score=28.39 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=19.6
Q ss_pred ccccccCchhHHHHhhc-----CCcEe-eccc
Q 045267 363 GFLCHCGWNSVLESVVN-----GVPLI-AWPL 388 (482)
Q Consensus 363 ~~I~HGG~gs~~eal~~-----GvP~v-~~P~ 388 (482)
++|.-||-||+.|++.. ..|.+ ++|.
T Consensus 60 ~ivv~GGDGTl~~v~~~l~~~~~~~~lgiiP~ 91 (293)
T TIGR00147 60 TVIAGGGDGTINEVVNALIQLDDIPALGILPL 91 (293)
T ss_pred EEEEECCCChHHHHHHHHhcCCCCCcEEEEcC
Confidence 89999999999996542 34444 5996
No 367
>COG1422 Predicted membrane protein [Function unknown]
Probab=29.52 E-value=1.8e+02 Score=26.06 Aligned_cols=82 Identities=16% Similarity=0.229 Sum_probs=56.2
Q ss_pred hHHHHhhcCCcEeeccccccchh-hHHHHHhhcceeeeeccCCCCccCHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHH
Q 045267 372 SVLESVVNGVPLIAWPLYAEQKM-NAVILTEDVKLALRPKANENGIVGRDEIAKVVKALMEGEQ-GKEVRNKMKDLKDAA 449 (482)
Q Consensus 372 s~~eal~~GvP~v~~P~~~DQ~~-na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~vl~~~~-~~~~r~~a~~l~~~~ 449 (482)
|+.++++-+.-.+..|+..=++. ..-.|.. ..-....+.+++.+.|-+ .+++++.+++++++.
T Consensus 24 ~~~~~i~~~ln~~f~P~i~~~~p~lvilV~a---------------vi~gl~~~i~~~~liD~ekm~~~qk~m~efq~e~ 88 (201)
T COG1422 24 SIRDGIGGALNVVFGPLLSPLPPHLVILVAA---------------VITGLYITILQKLLIDQEKMKELQKMMKEFQKEF 88 (201)
T ss_pred HHHHHHHHHHHHHHhhhccccccHHHHHHHH---------------HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 66777777777777776543333 4444444 455666677778888865 468999999999999
Q ss_pred HHHhhcCCchHHHHHHHHHHH
Q 045267 450 AAVLSENGSSTKALSQLASKW 470 (482)
Q Consensus 450 ~~a~~~~g~~~~~~~~~~~~~ 470 (482)
++|-++|.. .+++++-++=
T Consensus 89 ~eA~~~~d~--~~lkkLq~~q 107 (201)
T COG1422 89 REAQESGDM--KKLKKLQEKQ 107 (201)
T ss_pred HHHHHhCCH--HHHHHHHHHH
Confidence 998666554 5676665543
No 368
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=29.42 E-value=85 Score=29.52 Aligned_cols=37 Identities=14% Similarity=0.045 Sum_probs=32.1
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCC
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPS 48 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~ 48 (482)
|+|+++.=|+-|-..-...||..|+++ |++|.++=.+
T Consensus 1 ~~i~v~gKGGvGKTT~a~nLA~~la~~-G~rvlliD~D 37 (267)
T cd02032 1 MVLAVYGKGGIGKSTTSSNLSVALAKR-GKKVLQIGCD 37 (267)
T ss_pred CEEEEecCCCCCHHHHHHHHHHHHHHC-CCcEEEEecC
Confidence 568888778889999999999999988 9999988544
No 369
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=29.39 E-value=1.1e+02 Score=26.68 Aligned_cols=41 Identities=10% Similarity=0.109 Sum_probs=26.9
Q ss_pred HHHHHHhhCCCccEEEeCCCCcc-------------H--HHHHHHcCCccEEEccc
Q 045267 102 QELTSLVAKATVAALVVDLFGTD-------------A--FDVAQEFNISPYIFYPS 142 (482)
Q Consensus 102 ~~l~~~~~~~~pD~vi~D~~~~~-------------~--~~~A~~lgIP~v~~~~~ 142 (482)
+.+.++++..+||.++.+..++. + ..+|...|||++-+.|+
T Consensus 51 ~~l~~~i~~~~Pd~vaiE~~f~~~n~~sa~~l~~arGvi~la~~~~~ipv~ey~P~ 106 (164)
T PRK00039 51 DGLSELIDEYQPDEVAIEEVFFNKNPQSALKLGQARGVAILAAAQRGLPVAEYTPL 106 (164)
T ss_pred HHHHHHHHHhCCCEEEEehhhhccChHHHHHHHHHHHHHHHHHHHcCCCEEEECHH
Confidence 44555555669999987764433 1 14777889998776554
No 370
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=29.28 E-value=1e+02 Score=28.10 Aligned_cols=39 Identities=21% Similarity=-0.032 Sum_probs=34.5
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCC
Q 045267 10 APHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSD 49 (482)
Q Consensus 10 ~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~ 49 (482)
+.+|++.+.++..|-....-++-.|..+ |++|+++....
T Consensus 88 ~~~vvl~t~~gd~HdiG~~iv~~~l~~~-G~~Vi~LG~~v 126 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNLVGVILSNN-GYEVIDLGVMV 126 (213)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhC-CCEEEECCCCC
Confidence 4589999999999999999999999766 99999998654
No 371
>PRK06029 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; Provisional
Probab=29.24 E-value=69 Score=28.50 Aligned_cols=38 Identities=13% Similarity=0.088 Sum_probs=29.9
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCC
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSD 49 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~ 49 (482)
+||++.-.|+-| .+=...|.++|.+..||+|.++.++.
T Consensus 2 k~IllgVTGsia-a~ka~~l~~~L~k~~g~~V~vv~T~~ 39 (185)
T PRK06029 2 KRLIVGISGASG-AIYGVRLLQVLRDVGEIETHLVISQA 39 (185)
T ss_pred CEEEEEEECHHH-HHHHHHHHHHHHhhcCCeEEEEECHH
Confidence 357777777766 66699999999873399999998873
No 372
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=29.09 E-value=89 Score=29.38 Aligned_cols=35 Identities=9% Similarity=-0.016 Sum_probs=30.8
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEc
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFI 46 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~ 46 (482)
|+|+++.=|+-|-..-...||..|+++ |++|.++=
T Consensus 1 ~~i~~~gKGGVGKTT~~~nLA~~La~~-g~rVLliD 35 (268)
T TIGR01281 1 MILAVYGKGGIGKSTTSSNLSVAFAKL-GKRVLQIG 35 (268)
T ss_pred CEEEEEcCCcCcHHHHHHHHHHHHHhC-CCeEEEEe
Confidence 568888778889999999999999988 99999884
No 373
>PF06792 UPF0261: Uncharacterised protein family (UPF0261); InterPro: IPR008322 The proteins in this entry are functionally uncharacterised.
Probab=29.01 E-value=3.9e+02 Score=27.00 Aligned_cols=97 Identities=9% Similarity=0.040 Sum_probs=58.5
Q ss_pred CCcEEEEeccCCCCCCHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCcccccCCCCCCCCCCchhHHhhhcCCCe-eecc
Q 045267 270 LGSVLFVSFGSGGTLSCEQLNELALGLEMSEQRFLWVVRSPNNAANSTFFSVNSHKDPYDFLPKGFLDRTKGRGM-LVPS 348 (482)
Q Consensus 270 ~~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v-~~~~ 348 (482)
+||.|-+|+ ......-...+.+.|++.++.+++-...+.. | .-+++-+....+ -+.|
T Consensus 184 ~kp~I~iTm---fGvTTp~V~~~~~~Le~~G~Ev~VFHAtG~G---------G----------~aME~Li~~G~~~~VlD 241 (403)
T PF06792_consen 184 DKPLIGITM---FGVTTPCVDAIRERLEEEGYEVLVFHATGTG---------G----------RAMERLIREGQFDGVLD 241 (403)
T ss_pred CCcEEEEEC---CCCcHHHHHHHHHHHHhcCCeEEEEcCCCCc---------h----------HHHHHHHHcCCcEEEEE
Confidence 466787764 4557788888999999999987765443321 0 122222222111 1234
Q ss_pred ccchhhhhhcccccccccccCchhHHHHhhcCCcEeecccccc
Q 045267 349 WAPQAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAWPLYAE 391 (482)
Q Consensus 349 ~ipq~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~D 391 (482)
.-.+.. -.+-- .=|..+|-+=...|...|+|+|+.|-..|
T Consensus 242 lTttEl-~d~l~--GGv~sagp~Rl~AA~~~GIP~Vvs~GalD 281 (403)
T PF06792_consen 242 LTTTEL-ADELF--GGVLSAGPDRLEAAARAGIPQVVSPGALD 281 (403)
T ss_pred CcHHHH-HHHHh--CCCCCCCchHHHHHHHcCCCEEEecCccc
Confidence 333322 11111 23567888888999999999999997655
No 374
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=28.89 E-value=1.4e+02 Score=29.26 Aligned_cols=40 Identities=10% Similarity=-0.028 Sum_probs=32.9
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCC
Q 045267 12 HIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPP 52 (482)
Q Consensus 12 ~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 52 (482)
.+.++..++.|-.+=.+.++.+.+++ |..|.|+..+...+
T Consensus 57 iteI~Gp~GsGKTtLal~~~~~~~~~-g~~~vyId~E~~~~ 96 (325)
T cd00983 57 IIEIYGPESSGKTTLALHAIAEAQKL-GGTVAFIDAEHALD 96 (325)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc-CCCEEEECccccHH
Confidence 46677778889999999999999887 99999998775333
No 375
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=28.76 E-value=65 Score=28.27 Aligned_cols=28 Identities=18% Similarity=0.398 Sum_probs=20.3
Q ss_pred ccccccccCchhHHHHhhcCCcEeecccc
Q 045267 361 TGGFLCHCGWNSVLESVVNGVPLIAWPLY 389 (482)
Q Consensus 361 ~~~~I~HGG~gs~~eal~~GvP~v~~P~~ 389 (482)
+.++|++||...+..... ++|+|-+|..
T Consensus 35 ~dViIsRG~ta~~lr~~~-~iPVV~I~~s 62 (176)
T PF06506_consen 35 ADVIISRGGTAELLRKHV-SIPVVEIPIS 62 (176)
T ss_dssp -SEEEEEHHHHHHHHCC--SS-EEEE---
T ss_pred CeEEEECCHHHHHHHHhC-CCCEEEECCC
Confidence 339999999999999887 9999999974
No 376
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=28.74 E-value=71 Score=32.50 Aligned_cols=34 Identities=15% Similarity=0.003 Sum_probs=26.8
Q ss_pred ccCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcC
Q 045267 8 QAAPHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIP 47 (482)
Q Consensus 8 ~~~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~ 47 (482)
|..++|.|+..|..| +.+|..|+++ ||+|+.+-.
T Consensus 1 m~~~kI~VIGlG~~G-----~~~A~~La~~-G~~V~~~D~ 34 (415)
T PRK11064 1 MSFETISVIGLGYIG-----LPTAAAFASR-QKQVIGVDI 34 (415)
T ss_pred CCccEEEEECcchhh-----HHHHHHHHhC-CCEEEEEeC
Confidence 455789999877766 4678899887 999998853
No 377
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=28.62 E-value=1e+02 Score=29.57 Aligned_cols=38 Identities=13% Similarity=-0.011 Sum_probs=28.3
Q ss_pred ccCCEEEEEcCCCCC----ChHHHHHHHHHHHhcCCCEEEEEc
Q 045267 8 QAAPHIVLLPSPGMG----HLIPLIEFAKRLVHRHHFLVTFFI 46 (482)
Q Consensus 8 ~~~~~ili~~~~~~G----H~~P~l~La~~L~~r~GH~Vt~~~ 46 (482)
|.|+||+++..|... -+.-...++++|.+. ||+|.++.
T Consensus 1 ~~~~~i~vl~gg~s~e~~vsl~s~~~v~~aL~~~-g~~~~~~~ 42 (296)
T PRK14569 1 MKNEKIVVLYGGDSPEREVSLKSGKAVLDSLISQ-GYDAVGVD 42 (296)
T ss_pred CCCcEEEEEeCCCCCchHhHHHHHHHHHHHHHHc-CCEEEEEc
Confidence 457788888876443 245577899999887 99998874
No 378
>PLN02939 transferase, transferring glycosyl groups
Probab=28.46 E-value=91 Score=35.18 Aligned_cols=40 Identities=23% Similarity=0.254 Sum_probs=30.1
Q ss_pred cCCEEEEEcCC------CCCChHHHHHHHHHHHhcCCCEEEEEcCCC
Q 045267 9 AAPHIVLLPSP------GMGHLIPLIEFAKRLVHRHHFLVTFFIPSD 49 (482)
Q Consensus 9 ~~~~ili~~~~------~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~ 49 (482)
..|||++++.- +.|=-.-.-+|.++|++. ||+|.+++|..
T Consensus 480 ~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~-GhdV~VIlP~Y 525 (977)
T PLN02939 480 SGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKK-GHLVEIVLPKY 525 (977)
T ss_pred CCCEEEEEEcccccccccccHHHHHHHHHHHHHHc-CCeEEEEeCCC
Confidence 45899998752 224444567899999887 99999999864
No 379
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=28.38 E-value=1.7e+02 Score=27.00 Aligned_cols=43 Identities=21% Similarity=0.246 Sum_probs=35.4
Q ss_pred EEEEcC-CCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCCchhh
Q 045267 13 IVLLPS-PGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPPSEAQ 56 (482)
Q Consensus 13 ili~~~-~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~ 56 (482)
|.|++. |+.|-..-.+.||.+|+++ |-.|+++=.+++.+...+
T Consensus 4 Itf~s~KGGaGKTT~~~~LAs~la~~-G~~V~lIDaDpn~pl~~W 47 (231)
T PF07015_consen 4 ITFASSKGGAGKTTAAMALASELAAR-GARVALIDADPNQPLAKW 47 (231)
T ss_pred EEEecCCCCCcHHHHHHHHHHHHHHC-CCeEEEEeCCCCCcHHHH
Confidence 555554 6779999999999999988 999999988887775444
No 380
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=28.17 E-value=1.5e+02 Score=28.98 Aligned_cols=38 Identities=8% Similarity=-0.018 Sum_probs=32.0
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCC
Q 045267 12 HIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDG 50 (482)
Q Consensus 12 ~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~ 50 (482)
.+.|+..++.|-.+=.+.++.+.+++ |..|.|+..+..
T Consensus 57 iteI~G~~GsGKTtLaL~~~~~~~~~-g~~v~yId~E~~ 94 (321)
T TIGR02012 57 IIEIYGPESSGKTTLALHAIAEAQKA-GGTAAFIDAEHA 94 (321)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEEcccch
Confidence 56777778889999999999999887 999999987643
No 381
>TIGR03446 mycothiol_Mca mycothiol conjugate amidase Mca. Mycobacterium tuberculosis, Corynebacterium glutamicum, and related species use the thiol mycothiol in place of glutathione. This enzyme, homologous to the (dispensible) MshB enzyme of mycothiol biosynthesis, is described as an amidase that acts on conjugates to mycothiol. It is a detoxification enzyme.
Probab=27.94 E-value=2.4e+02 Score=27.01 Aligned_cols=19 Identities=5% Similarity=0.116 Sum_probs=12.8
Q ss_pred HHHHHHHHhhCCCccEEEe
Q 045267 100 LRQELTSLVAKATVAALVV 118 (482)
Q Consensus 100 l~~~l~~~~~~~~pD~vi~ 118 (482)
+.+.+.+++++.+||+||+
T Consensus 109 ~~~~L~~iIr~~~PdvVvT 127 (283)
T TIGR03446 109 AAEPLVRVIREFRPHVITT 127 (283)
T ss_pred HHHHHHHHHHHcCCEEEEe
Confidence 3444555556679999986
No 382
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=27.91 E-value=2e+02 Score=30.55 Aligned_cols=27 Identities=15% Similarity=0.507 Sum_probs=22.4
Q ss_pred ccccccccCch------hHHHHhhcCCcEeecc
Q 045267 361 TGGFLCHCGWN------SVLESVVNGVPLIAWP 387 (482)
Q Consensus 361 ~~~~I~HGG~g------s~~eal~~GvP~v~~P 387 (482)
.+++++|.|-| .+.+|...++|+|++-
T Consensus 79 ~gv~~~t~GPG~~N~~~gl~~A~~~~~Pvl~It 111 (571)
T PRK07710 79 PGVVIATSGPGATNVVTGLADAMIDSLPLVVFT 111 (571)
T ss_pred CeEEEECCCccHHHHHHHHHHHhhcCCCEEEEe
Confidence 34888888866 5789999999999984
No 383
>PRK08322 acetolactate synthase; Reviewed
Probab=27.90 E-value=2.2e+02 Score=30.12 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=22.3
Q ss_pred ccccccccCch------hHHHHhhcCCcEeecc
Q 045267 361 TGGFLCHCGWN------SVLESVVNGVPLIAWP 387 (482)
Q Consensus 361 ~~~~I~HGG~g------s~~eal~~GvP~v~~P 387 (482)
.+++++|.|-| .+.+|...++|+|++.
T Consensus 64 ~gv~~~t~GpG~~N~~~~i~~A~~~~~Pll~i~ 96 (547)
T PRK08322 64 AGVCLSTLGPGATNLVTGVAYAQLGGMPMVAIT 96 (547)
T ss_pred CEEEEECCCccHhHHHHHHHHHhhcCCCEEEEe
Confidence 44888888754 7899999999999985
No 384
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=27.78 E-value=1.3e+02 Score=26.83 Aligned_cols=32 Identities=9% Similarity=0.084 Sum_probs=22.3
Q ss_pred hhCCCccEEEeC-CCC-ccHHHHHHHcCCccEEE
Q 045267 108 VAKATVAALVVD-LFG-TDAFDVAQEFNISPYIF 139 (482)
Q Consensus 108 ~~~~~pD~vi~D-~~~-~~~~~~A~~lgIP~v~~ 139 (482)
+...++|+|+.- ... +.|..+|.++|+|++..
T Consensus 46 ~~~~~~D~Ivg~e~~GiplA~~lA~~Lg~p~v~v 79 (189)
T PRK09219 46 FKDEGITKILTIEASGIAPAVMAALALGVPVVFA 79 (189)
T ss_pred hccCCCCEEEEEccccHHHHHHHHHHHCCCEEEE
Confidence 345589999843 322 34667999999998763
No 385
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=27.71 E-value=3.1e+02 Score=24.40 Aligned_cols=62 Identities=18% Similarity=0.198 Sum_probs=40.4
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCC-chhhhhhhhcCC--CceeEEEec
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPP-SEAQKSTLESLP--SSINSVFLP 73 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~l~ 73 (482)
+.|+|+..+..-|---+..+++.|++. |.+|.+++-....+ ......+..... ++=.+..+|
T Consensus 109 rivi~v~S~~~~d~~~i~~~~~~lkk~-~I~v~vI~~G~~~~~~~~l~~~~~~~~~~~~s~~~~~~ 173 (187)
T cd01452 109 RIVAFVGSPIEEDEKDLVKLAKRLKKN-NVSVDIINFGEIDDNTEKLTAFIDAVNGKDGSHLVSVP 173 (187)
T ss_pred eEEEEEecCCcCCHHHHHHHHHHHHHc-CCeEEEEEeCCCCCCHHHHHHHHHHhcCCCCceEEEeC
Confidence 348888888787877777999999887 99988888554433 223444444442 234455555
No 386
>cd00501 Peptidase_C15 Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I: Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins. The N-terminal pGlu protects these proteins from proteolysis by other proteases until the pGlu is removed by a PGP. PGPs are cysteine proteases with a Cys-His-Glu/Asp catalytic triad. Type I PGPs are found in a wide variety of prokaryotes and eukaryotes. It is not clear whether the functional form is a monomer, a homodimer, or a homotetramer.
Probab=27.63 E-value=2.1e+02 Score=25.57 Aligned_cols=26 Identities=19% Similarity=0.199 Sum_probs=21.2
Q ss_pred CEEEEEcCCCCC--ChHHHHHHHHHHHh
Q 045267 11 PHIVLLPSPGMG--HLIPLIEFAKRLVH 36 (482)
Q Consensus 11 ~~ili~~~~~~G--H~~P~l~La~~L~~ 36 (482)
|+|++..|+-++ ..||...++++|..
T Consensus 1 ~~vLvTGF~PF~~~~~NpS~~~v~~L~~ 28 (194)
T cd00501 1 KKVLVTGFGPFGGEPVNPSWEAVKELPK 28 (194)
T ss_pred CEEEEEecCCCCCCCCChHHHHHHhccc
Confidence 469999988774 47999999999954
No 387
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=27.55 E-value=91 Score=29.98 Aligned_cols=37 Identities=14% Similarity=0.050 Sum_probs=31.3
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCC
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPS 48 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~ 48 (482)
++|.|+.=|+-|-..-...||..|+++ |++|.++-.+
T Consensus 5 ~~iai~~KGGvGKTt~~~nLa~~la~~-g~kVLliD~D 41 (295)
T PRK13234 5 RQIAFYGKGGIGKSTTSQNTLAALVEM-GQKILIVGCD 41 (295)
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHHC-CCeEEEEecc
Confidence 367777667889999999999999988 9999999544
No 388
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=27.54 E-value=1e+02 Score=27.42 Aligned_cols=31 Identities=16% Similarity=0.277 Sum_probs=22.1
Q ss_pred EEEeCCCC-ccHHHHHHHcCCccEEEccchHH
Q 045267 115 ALVVDLFG-TDAFDVAQEFNISPYIFYPSTAM 145 (482)
Q Consensus 115 ~vi~D~~~-~~~~~~A~~lgIP~v~~~~~~~~ 145 (482)
++|...+. +.+..+|+++|+|.|.+.|+...
T Consensus 62 ~liGSSlGG~~A~~La~~~~~~avLiNPav~p 93 (187)
T PF05728_consen 62 VLIGSSLGGFYATYLAERYGLPAVLINPAVRP 93 (187)
T ss_pred EEEEEChHHHHHHHHHHHhCCCEEEEcCCCCH
Confidence 55655443 45667999999999988876443
No 389
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=27.47 E-value=3.1e+02 Score=27.00 Aligned_cols=34 Identities=18% Similarity=0.227 Sum_probs=26.9
Q ss_pred hccCCEEEEEcCCCCCChHHHHHHHHHHHhcCCC-EEEEEc
Q 045267 7 AQAAPHIVLLPSPGMGHLIPLIEFAKRLVHRHHF-LVTFFI 46 (482)
Q Consensus 7 ~~~~~~ili~~~~~~GH~~P~l~La~~L~~r~GH-~Vt~~~ 46 (482)
+++..+|+++..|+.| -.+|+.|++. |+ +++++=
T Consensus 21 ~L~~~~VlIiG~GglG-----s~va~~La~a-Gvg~i~lvD 55 (338)
T PRK12475 21 KIREKHVLIVGAGALG-----AANAEALVRA-GIGKLTIAD 55 (338)
T ss_pred hhcCCcEEEECCCHHH-----HHHHHHHHHc-CCCEEEEEc
Confidence 4556789999999887 6789999887 98 677663
No 390
>PRK09739 hypothetical protein; Provisional
Probab=27.25 E-value=1.4e+02 Score=26.58 Aligned_cols=38 Identities=16% Similarity=0.044 Sum_probs=21.7
Q ss_pred ccCCEEEEEcC-CCCCC-hHH-HHHHHHHHHhcCCCEEEEEc
Q 045267 8 QAAPHIVLLPS-PGMGH-LIP-LIEFAKRLVHRHHFLVTFFI 46 (482)
Q Consensus 8 ~~~~~ili~~~-~~~GH-~~P-~l~La~~L~~r~GH~Vt~~~ 46 (482)
|.+|+|+++.. |-.+- ..- .-.+++.|.++ ||+|+++-
T Consensus 1 ~~mmkiliI~~sp~~~s~s~~l~~~~~~~~~~~-g~~v~~~d 41 (199)
T PRK09739 1 MQSMRIYLVWAHPRHDSLTAKVAEAIHQRAQER-GHQVEELD 41 (199)
T ss_pred CCCceEEEEEcCCCCCCcHHHHHHHHHHHHHHC-CCEEEEEE
Confidence 34556666644 43332 222 34456667666 99999884
No 391
>PRK13236 nitrogenase reductase; Reviewed
Probab=27.00 E-value=95 Score=29.89 Aligned_cols=38 Identities=8% Similarity=0.002 Sum_probs=31.8
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCC
Q 045267 10 APHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPS 48 (482)
Q Consensus 10 ~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~ 48 (482)
.+.|.|+.=|+-|-.+-.+.||..|+++ |++|.++=.+
T Consensus 6 ~~~~~~~GKGGVGKTt~a~NLA~~La~~-G~rVLliD~D 43 (296)
T PRK13236 6 IRQIAFYGKGGIGKSTTSQNTLAAMAEM-GQRILIVGCD 43 (296)
T ss_pred ceEEEEECCCcCCHHHHHHHHHHHHHHC-CCcEEEEEcc
Confidence 3556676667889999999999999998 9999999544
No 392
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase. 2-oxoglutarate decarboxylase/SHCHC synthase (menD) is a thiamine pyrophosphate enzyme involved in menaquinone biosynthesis.
Probab=26.95 E-value=3.3e+02 Score=27.75 Aligned_cols=26 Identities=35% Similarity=0.630 Sum_probs=21.6
Q ss_pred ccccccccCch------hHHHHhhcCCcEeec
Q 045267 361 TGGFLCHCGWN------SVLESVVNGVPLIAW 386 (482)
Q Consensus 361 ~~~~I~HGG~g------s~~eal~~GvP~v~~ 386 (482)
.+++++|.|-| .+.+|...++|+|++
T Consensus 64 ~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i 95 (432)
T TIGR00173 64 PVAVVCTSGTAVANLLPAVIEASYSGVPLIVL 95 (432)
T ss_pred CEEEEECCcchHhhhhHHHHHhcccCCcEEEE
Confidence 34788888755 778999999999999
No 393
>PLN02727 NAD kinase
Probab=26.91 E-value=85 Score=35.06 Aligned_cols=54 Identities=11% Similarity=0.121 Sum_probs=40.5
Q ss_pred hcccccccccccCchhHHHHhhc----CCcEeeccccccchhhHHHHHhhcceeeeeccCCCCccCHHHHHHHHHHHhcC
Q 045267 357 SHGSTGGFLCHCGWNSVLESVVN----GVPLIAWPLYAEQKMNAVILTEDVKLALRPKANENGIVGRDEIAKVVKALMEG 432 (482)
Q Consensus 357 ~~~~~~~~I~HGG~gs~~eal~~----GvP~v~~P~~~DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~vl~~ 432 (482)
..++ ++|+=||-||+..|+.. ++|++.|- .|...-..+ +..+++.++|.+++.+
T Consensus 742 ~~~D--LVIvLGGDGTlLrAar~~~~~~iPILGIN-----------------lGrLGFLTd---i~~ee~~~~L~~Il~G 799 (986)
T PLN02727 742 ERVD--FVACLGGDGVILHASNLFRGAVPPVVSFN-----------------LGSLGFLTS---HYFEDFRQDLRQVIHG 799 (986)
T ss_pred cCCC--EEEEECCcHHHHHHHHHhcCCCCCEEEEe-----------------CCCcccccc---CCHHHHHHHHHHHHcC
Confidence 4567 99999999999999664 67877763 333323334 7789999999999976
No 394
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional
Probab=26.86 E-value=2.4e+02 Score=27.75 Aligned_cols=98 Identities=7% Similarity=0.053 Sum_probs=57.9
Q ss_pred CcEEEEeccCC---CCCCHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCcccccCCCCCCCCCCchhHHhhhcCC-Ceee
Q 045267 271 GSVLFVSFGSG---GTLSCEQLNELALGLEMSEQRFLWVVRSPNNAANSTFFSVNSHKDPYDFLPKGFLDRTKGR-GMLV 346 (482)
Q Consensus 271 ~~~v~vs~GS~---~~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~-~v~~ 346 (482)
++.|.+.-|+. ...+.+.+.++++.|...+.++++.-+.+..+ ...-+.+.+..... .+-+
T Consensus 183 ~~~i~i~pga~~~~K~Wp~e~fa~l~~~L~~~~~~vvl~ggp~e~e---------------~~~~~~i~~~~~~~~~~~l 247 (352)
T PRK10422 183 QNYVVIQPTARQIFKCWDNDKFSAVIDALQARGYEVVLTSGPDKDD---------------LACVNEIAQGCQTPPVTAL 247 (352)
T ss_pred CCeEEEecCCCccccCCCHHHHHHHHHHHHHCCCeEEEEcCCChHH---------------HHHHHHHHHhcCCCccccc
Confidence 45787888875 44577888889888876677766543322110 00001111111111 1222
Q ss_pred cccc--c-hhhhhhcccccccccccCchhHHHHhhcCCcEeec
Q 045267 347 PSWA--P-QAQVLSHGSTGGFLCHCGWNSVLESVVNGVPLIAW 386 (482)
Q Consensus 347 ~~~i--p-q~~lL~~~~~~~~I~HGG~gs~~eal~~GvP~v~~ 386 (482)
.+-. . -.+++.+++ +||+. --|-++=|.+.|+|.|.+
T Consensus 248 ~g~~sL~el~ali~~a~--l~v~n-DSGp~HlAaA~g~P~v~l 287 (352)
T PRK10422 248 AGKTTFPELGALIDHAQ--LFIGV-DSAPAHIAAAVNTPLICL 287 (352)
T ss_pred cCCCCHHHHHHHHHhCC--EEEec-CCHHHHHHHHcCCCEEEE
Confidence 3322 2 356888999 99965 347788999999999875
No 395
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=26.80 E-value=4.5e+02 Score=23.23 Aligned_cols=51 Identities=14% Similarity=0.151 Sum_probs=33.9
Q ss_pred CCcEeeccc----cccc---hhhHHHHHhhcceeeeeccC---------CCCccCHHHHHHHHHHHhc
Q 045267 380 GVPLIAWPL----YAEQ---KMNAVILTEDVKLALRPKAN---------ENGIVGRDEIAKVVKALME 431 (482)
Q Consensus 380 GvP~v~~P~----~~DQ---~~na~rv~~~~G~G~~l~~~---------~~~~~~~~~l~~ai~~vl~ 431 (482)
++|++++|- .... ..|-.++.+ .|+=+.-+.. .....+.++|.+.+.+.+.
T Consensus 113 ~~pvvi~Pamn~~m~~~p~~~~Nl~~L~~-~G~~vi~p~~g~la~~~~g~g~~~~~~~i~~~v~~~~~ 179 (182)
T PRK07313 113 TTPKLIAPAMNTKMYENPATQRNLKTLKE-DGVQEIEPKEGLLACGDEGYGALADIETILETIENTLK 179 (182)
T ss_pred CCCEEEEECCCHHHhcCHHHHHHHHHHHH-CCCEEECCCCCccccCCccCCCCCCHHHHHHHHHHHhc
Confidence 999999995 3343 457778888 7766554431 1223567888888877664
No 396
>PRK13054 lipid kinase; Reviewed
Probab=26.79 E-value=1.3e+02 Score=29.04 Aligned_cols=26 Identities=19% Similarity=0.168 Sum_probs=21.9
Q ss_pred ccccccCchhHHHHhhc------C--CcEeeccc
Q 045267 363 GFLCHCGWNSVLESVVN------G--VPLIAWPL 388 (482)
Q Consensus 363 ~~I~HGG~gs~~eal~~------G--vP~v~~P~ 388 (482)
++|..||-||+.|++.. + +|+-++|.
T Consensus 59 ~vvv~GGDGTl~evv~~l~~~~~~~~~~lgiiP~ 92 (300)
T PRK13054 59 TVIAGGGDGTINEVATALAQLEGDARPALGILPL 92 (300)
T ss_pred EEEEECCccHHHHHHHHHHhhccCCCCcEEEEeC
Confidence 89999999999998744 3 58999996
No 397
>PF08844 DUF1815: Domain of unknown function (DUF1815); InterPro: IPR014943 This entry is about 100 amino acids in length and is functionally uncharacterised.
Probab=26.73 E-value=3e+02 Score=21.28 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=21.0
Q ss_pred hHHHHHHHHHHHhcCCCEEEEEcCCCC
Q 045267 24 LIPLIEFAKRLVHRHHFLVTFFIPSDG 50 (482)
Q Consensus 24 ~~P~l~La~~L~~r~GH~Vt~~~~~~~ 50 (482)
+..+-+||..|.+| |+-.+..+....
T Consensus 16 Vm~LqALa~~Le~r-G~~AsCYtC~dG 41 (105)
T PF08844_consen 16 VMSLQALAIVLERR-GYLASCYTCGDG 41 (105)
T ss_pred HHHHHHHHHHHHhC-CceeEEEecCCC
Confidence 34577899999887 999999998543
No 398
>PRK06270 homoserine dehydrogenase; Provisional
Probab=26.71 E-value=3.6e+02 Score=26.54 Aligned_cols=59 Identities=12% Similarity=0.111 Sum_probs=36.9
Q ss_pred chhhhhhccccccccc------ccC---chhHHHHhhcCCcEee---ccccccchhhHHHHHhhcceeeeec
Q 045267 351 PQAQVLSHGSTGGFLC------HCG---WNSVLESVVNGVPLIA---WPLYAEQKMNAVILTEDVKLALRPK 410 (482)
Q Consensus 351 pq~~lL~~~~~~~~I~------HGG---~gs~~eal~~GvP~v~---~P~~~DQ~~na~rv~~~~G~G~~l~ 410 (482)
...++|...++.++|- |+| ..-+.+||.+|+++|+ -|+...-....+..++ .|+.+...
T Consensus 80 d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~-~g~~~~~e 150 (341)
T PRK06270 80 SGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKK-NGVRFRYE 150 (341)
T ss_pred CHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHH-cCCEEEEe
Confidence 4456665433334444 553 4566899999999999 4875544445555556 67766643
No 399
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=26.67 E-value=4.2e+02 Score=25.27 Aligned_cols=36 Identities=14% Similarity=0.145 Sum_probs=29.3
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCC
Q 045267 10 APHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGP 51 (482)
Q Consensus 10 ~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~ 51 (482)
+++|+|+..|..|. .+|+.|.++ ||.|.++..+...
T Consensus 3 ~~~v~IvG~GliG~-----s~a~~l~~~-g~~v~i~g~d~~~ 38 (279)
T COG0287 3 SMKVGIVGLGLMGG-----SLARALKEA-GLVVRIIGRDRSA 38 (279)
T ss_pred CcEEEEECCchHHH-----HHHHHHHHc-CCeEEEEeecCcH
Confidence 56899999998886 478999887 9999998866543
No 400
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=26.65 E-value=92 Score=29.21 Aligned_cols=41 Identities=17% Similarity=0.293 Sum_probs=35.6
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCC
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPP 52 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 52 (482)
.-+++...|+.|...-.++++...+++ |..|.|++.....+
T Consensus 24 ~~~lI~G~pGsGKT~f~~qfl~~~~~~-ge~vlyvs~~e~~~ 64 (260)
T COG0467 24 SVVLITGPPGTGKTIFALQFLYEGARE-GEPVLYVSTEESPE 64 (260)
T ss_pred cEEEEEcCCCCcHHHHHHHHHHHHHhc-CCcEEEEEecCCHH
Confidence 458888889999999999999999988 99999999775444
No 401
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=26.63 E-value=89 Score=28.85 Aligned_cols=35 Identities=11% Similarity=-0.048 Sum_probs=18.5
Q ss_pred hCCCccEEEeCCC--CccHHHHHHH----cCCccEEEccch
Q 045267 109 AKATVAALVVDLF--GTDAFDVAQE----FNISPYIFYPST 143 (482)
Q Consensus 109 ~~~~pD~vi~D~~--~~~~~~~A~~----lgIP~v~~~~~~ 143 (482)
+.++||++|+-.- ...++..|++ .|||+++++-.+
T Consensus 56 ~~~~pdf~I~isPN~~~PGP~~ARE~l~~~~iP~IvI~D~p 96 (276)
T PF01993_consen 56 KEWDPDFVIVISPNAAAPGPTKAREMLSAKGIPCIVISDAP 96 (276)
T ss_dssp HHH--SEEEEE-S-TTSHHHHHHHHHHHHSSS-EEEEEEGG
T ss_pred HhhCCCEEEEECCCCCCCCcHHHHHHHHhCCCCEEEEcCCC
Confidence 3449999885432 2334555554 499999876543
No 402
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=26.52 E-value=49 Score=30.85 Aligned_cols=27 Identities=19% Similarity=0.119 Sum_probs=19.9
Q ss_pred CChHHHHHHHHHHHhcCCCEEEEEcCCC
Q 045267 22 GHLIPLIEFAKRLVHRHHFLVTFFIPSD 49 (482)
Q Consensus 22 GH~~P~l~La~~L~~r~GH~Vt~~~~~~ 49 (482)
|=-.-.-.|+++|+++ ||+|++++|..
T Consensus 17 GLgdv~~~L~kaL~~~-G~~V~Vi~P~y 43 (245)
T PF08323_consen 17 GLGDVVGSLPKALAKQ-GHDVRVIMPKY 43 (245)
T ss_dssp HHHHHHHHHHHHHHHT-T-EEEEEEE-T
T ss_pred cHhHHHHHHHHHHHhc-CCeEEEEEccc
Confidence 3344567899999888 99999999863
No 403
>COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=26.49 E-value=83 Score=30.73 Aligned_cols=32 Identities=19% Similarity=0.214 Sum_probs=27.9
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCC
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPS 48 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~ 48 (482)
++|.++..|++| .+||+.|+++ ||+|++....
T Consensus 2 ~kI~ViGaGswG-----TALA~~la~n-g~~V~lw~r~ 33 (329)
T COG0240 2 MKIAVIGAGSWG-----TALAKVLARN-GHEVRLWGRD 33 (329)
T ss_pred ceEEEEcCChHH-----HHHHHHHHhc-CCeeEEEecC
Confidence 579999999999 4789999887 9999999865
No 404
>TIGR00725 conserved hypothetical protein, DprA/Smf-related, family 1. This model represents one branch of a subfamily of uncharacterized proteins. Both PSI-BLAST and weak hits by this model show a low level of similarity and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting the branches may have distinct functions. This family is one of several families within the scope of PFAM model pfam03641, several members of which are annotated as lysine decarboxylases. That larger family, and the branch described by this model, have a well-conserved motif PGGXGTXXE.
Probab=26.39 E-value=57 Score=28.22 Aligned_cols=37 Identities=14% Similarity=0.190 Sum_probs=27.4
Q ss_pred hhhhhhcccccccccccCchhHHH---HhhcCCcEeeccc
Q 045267 352 QAQVLSHGSTGGFLCHCGWNSVLE---SVVNGVPLIAWPL 388 (482)
Q Consensus 352 q~~lL~~~~~~~~I~HGG~gs~~e---al~~GvP~v~~P~ 388 (482)
-..++...+..+++--||.||..| ++.+++|+++++.
T Consensus 84 Rk~~m~~~sda~IvlpGG~GTL~E~~~a~~~~kpv~~l~~ 123 (159)
T TIGR00725 84 RNFILVRSADVVVSVGGGYGTAIEILGAYALGGPVVVLRG 123 (159)
T ss_pred HHHHHHHHCCEEEEcCCchhHHHHHHHHHHcCCCEEEEEC
Confidence 445555555557777899998765 5889999999985
No 405
>PRK11519 tyrosine kinase; Provisional
Probab=26.37 E-value=5e+02 Score=28.62 Aligned_cols=37 Identities=11% Similarity=0.205 Sum_probs=29.6
Q ss_pred EEEEEcC--CCCCChHHHHHHHHHHHhcCCCEEEEEcCCC
Q 045267 12 HIVLLPS--PGMGHLIPLIEFAKRLVHRHHFLVTFFIPSD 49 (482)
Q Consensus 12 ~ili~~~--~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~ 49 (482)
+++++++ |+.|-..-...||..|++. |++|.++-.+.
T Consensus 527 kvi~vts~~~geGKTt~a~nLA~~la~~-g~rvLlID~Dl 565 (719)
T PRK11519 527 NVLMMTGVSPSIGKTFVCANLAAVISQT-NKRVLLIDCDM 565 (719)
T ss_pred eEEEEECCCCCCCHHHHHHHHHHHHHhC-CCcEEEEeCCC
Confidence 4555554 6779999999999999987 99999996543
No 406
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=26.34 E-value=7.2e+02 Score=25.48 Aligned_cols=36 Identities=14% Similarity=0.095 Sum_probs=28.8
Q ss_pred EEEEEcCCCC-CChHHHHHHHHHHHhcCCCEEEEEcCC
Q 045267 12 HIVLLPSPGM-GHLIPLIEFAKRLVHRHHFLVTFFIPS 48 (482)
Q Consensus 12 ~ili~~~~~~-GH~~P~l~La~~L~~r~GH~Vt~~~~~ 48 (482)
+|+|....+. |-..-.+.|++.|.++ |.+|..+=+.
T Consensus 3 ~~~i~~~~s~~GKT~vt~gl~~~l~~~-g~~v~~~K~G 39 (433)
T PRK13896 3 GFVLGGTSSGVGKTVATLATIRALEDA-GYAVQPAKAG 39 (433)
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHC-CCeeEEEeeC
Confidence 3666666655 9999999999999887 9999877543
No 407
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=26.28 E-value=1.4e+02 Score=28.94 Aligned_cols=120 Identities=11% Similarity=-0.022 Sum_probs=64.7
Q ss_pred CCCHHHHHHHHHHHHhcCCceEEEEeCCCCCCCCcccccCCCCCCCCCCchhHHhhhcCCCeeecc--ccc-hhhhhhcc
Q 045267 283 TLSCEQLNELALGLEMSEQRFLWVVRSPNNAANSTFFSVNSHKDPYDFLPKGFLDRTKGRGMLVPS--WAP-QAQVLSHG 359 (482)
Q Consensus 283 ~~~~~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~v~~~~--~ip-q~~lL~~~ 359 (482)
..+.+.+.++++.+...+.++++..++... ...-+.+.+.. .++.+.+ .+. -..++.++
T Consensus 193 ~Wp~e~~a~li~~l~~~~~~ivl~~G~~~e----------------~~~~~~i~~~~--~~~~l~g~~sL~elaali~~a 254 (322)
T PRK10964 193 HWPEAHWRELIGLLAPSGLRIKLPWGAEHE----------------EQRAKRLAEGF--PYVEVLPKLSLEQVARVLAGA 254 (322)
T ss_pred cCCHHHHHHHHHHHHHCCCeEEEeCCCHHH----------------HHHHHHHHccC--CcceecCCCCHHHHHHHHHhC
Confidence 356777888888886656665544343211 00011111111 1222222 223 35688899
Q ss_pred cccccccccCchhHHHHhhcCCcEeeccccccchhh------HHHHHhhcceeeeeccCCCCccCHHHHHHHHHHHhc
Q 045267 360 STGGFLCHCGWNSVLESVVNGVPLIAWPLYAEQKMN------AVILTEDVKLALRPKANENGIVGRDEIAKVVKALME 431 (482)
Q Consensus 360 ~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~DQ~~n------a~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~vl~ 431 (482)
+ +||+.- -|.++=|.+.|+|+|.+=-..|...+ ...+.- ++ -.... ++++.+-++++++|.
T Consensus 255 ~--l~I~nD-SGp~HlA~A~g~p~valfGpt~p~~~~p~~~~~~~~~~---~~--~cm~~---I~~e~V~~~~~~~l~ 321 (322)
T PRK10964 255 K--AVVSVD-TGLSHLTAALDRPNITLYGPTDPGLIGGYGKNQHACRS---PG--KSMAD---LSAETVFQKLETLIS 321 (322)
T ss_pred C--EEEecC-CcHHHHHHHhCCCEEEEECCCCcccccCCCCCceeecC---CC--ccccc---CCHHHHHHHHHHHhh
Confidence 9 999754 47899999999999986211121111 111110 00 11334 889999999888763
No 408
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=26.23 E-value=1.6e+02 Score=26.72 Aligned_cols=38 Identities=13% Similarity=0.133 Sum_probs=30.3
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCC
Q 045267 12 HIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDG 50 (482)
Q Consensus 12 ~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~ 50 (482)
-+++...|+.|-..=.+.++..-.++ |+.|.|++.+..
T Consensus 18 ~~li~G~~G~GKt~~~~~~~~~~~~~-g~~~~y~s~e~~ 55 (224)
T TIGR03880 18 VIVVIGEYGTGKTTFSLQFLYQGLKN-GEKAMYISLEER 55 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhC-CCeEEEEECCCC
Confidence 46677777889888888888777677 999999998753
No 409
>PRK13337 putative lipid kinase; Reviewed
Probab=26.13 E-value=1.8e+02 Score=28.04 Aligned_cols=26 Identities=19% Similarity=0.072 Sum_probs=21.6
Q ss_pred ccccccCchhHHHHhhc------CCcEeeccc
Q 045267 363 GFLCHCGWNSVLESVVN------GVPLIAWPL 388 (482)
Q Consensus 363 ~~I~HGG~gs~~eal~~------GvP~v~~P~ 388 (482)
++|.-||-||+.|++.. ..|+-++|.
T Consensus 60 ~vvv~GGDGTl~~vv~gl~~~~~~~~lgiiP~ 91 (304)
T PRK13337 60 LVIAAGGDGTLNEVVNGIAEKENRPKLGIIPV 91 (304)
T ss_pred EEEEEcCCCHHHHHHHHHhhCCCCCcEEEECC
Confidence 89999999999998752 357888995
No 410
>PRK00885 phosphoribosylamine--glycine ligase; Provisional
Probab=26.09 E-value=1.1e+02 Score=31.06 Aligned_cols=31 Identities=16% Similarity=0.244 Sum_probs=22.4
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEc
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFI 46 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~ 46 (482)
|||+++..++..| +|++.|.+..|+.+.++.
T Consensus 1 ~kvliiG~G~~~~-----~l~~~l~~~~~~~~i~~~ 31 (420)
T PRK00885 1 MKVLVIGSGGREH-----ALAWKLAQSPLVEKVYVA 31 (420)
T ss_pred CEEEEECCCHHHH-----HHHHHHHhCCCCCEEEEe
Confidence 5799999997777 499999775354455553
No 411
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=26.05 E-value=70 Score=30.58 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=26.7
Q ss_pred cCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCC
Q 045267 9 AAPHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPS 48 (482)
Q Consensus 9 ~~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~ 48 (482)
+.++|.++..|..| ..+|..|+++ ||+|+++...
T Consensus 2 ~~~kIaViGaG~mG-----~~iA~~la~~-G~~V~l~d~~ 35 (287)
T PRK08293 2 DIKNVTVAGAGVLG-----SQIAFQTAFH-GFDVTIYDIS 35 (287)
T ss_pred CccEEEEECCCHHH-----HHHHHHHHhc-CCeEEEEeCC
Confidence 34579999888888 4578888777 9999999643
No 412
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=25.72 E-value=70 Score=32.57 Aligned_cols=38 Identities=21% Similarity=0.366 Sum_probs=27.2
Q ss_pred ccCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCC
Q 045267 8 QAAPHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGP 51 (482)
Q Consensus 8 ~~~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~ 51 (482)
|+++||+|+..|..| +..|+.|... +++||++.+..+.
T Consensus 8 ~~~~~vVIvGgG~aG-----l~~a~~L~~~-~~~ItlI~~~~~~ 45 (424)
T PTZ00318 8 LKKPNVVVLGTGWAG-----AYFVRNLDPK-KYNITVISPRNHM 45 (424)
T ss_pred CCCCeEEEECCCHHH-----HHHHHHhCcC-CCeEEEEcCCCCc
Confidence 455689998866555 4467888554 8999999876543
No 413
>PRK00911 dihydroxy-acid dehydratase; Provisional
Probab=25.65 E-value=4.4e+02 Score=27.84 Aligned_cols=46 Identities=15% Similarity=0.211 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhhCCCccEEE----eCCCCccHHHHHHHcCCccEEEccch
Q 045267 98 PCLRQELTSLVAKATVAALV----VDLFGTDAFDVAQEFNISPYIFYPST 143 (482)
Q Consensus 98 ~~l~~~l~~~~~~~~pD~vi----~D~~~~~~~~~A~~lgIP~v~~~~~~ 143 (482)
+.+...++..++...+|.+| ||-..++.+.+|..++||.+.+...+
T Consensus 95 eliA~~iE~~~~a~~~Dg~V~l~~CDK~~Pg~lMaaarlniPsi~v~gGp 144 (552)
T PRK00911 95 EVIADSIETVVNAHWFDGLVAIPGCDKNMPGMLMAAARLNVPSIFVYGGP 144 (552)
T ss_pred HHHHHHHHHHhhCCCcceEEEeccCCCCcHHHHHHHHhcCCCEEEEeCCC
Confidence 34455566666677899887 78777878889999999999886654
No 414
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=25.54 E-value=3e+02 Score=28.08 Aligned_cols=41 Identities=12% Similarity=0.246 Sum_probs=31.9
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHH-HhcCCCEEEEEcCCCCCC
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRL-VHRHHFLVTFFIPSDGPP 52 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L-~~r~GH~Vt~~~~~~~~~ 52 (482)
..|+++..++.|-..-...||..+ ..+ |++|.+++.+.+..
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~-G~~V~Lit~Dt~R~ 265 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHM-GKSVSLYTTDNYRI 265 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhc-CCeEEEecccchhh
Confidence 446677667779999999999876 455 99999999775433
No 415
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=25.46 E-value=5.4e+02 Score=24.65 Aligned_cols=76 Identities=13% Similarity=0.030 Sum_probs=46.9
Q ss_pred cccccccccccCchhHHHHhhcCCcEeeccccc--cchhhHHHHHhhcceeeeeccCCCCccCHHHHHHHHHHHhcCCch
Q 045267 358 HGSTGGFLCHCGWNSVLESVVNGVPLIAWPLYA--EQKMNAVILTEDVKLALRPKANENGIVGRDEIAKVVKALMEGEQG 435 (482)
Q Consensus 358 ~~~~~~~I~HGG~gs~~eal~~GvP~v~~P~~~--DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~vl~~~~~ 435 (482)
|++ +.=.+.|.+.+..|+.+|+....+-++. +..+-+..+.+ -.+.+..+ -|.+.|.+.+.++-..
T Consensus 194 HpS--LLP~~rG~~~~~~ai~~G~~~tG~TvH~v~~~~D~G~Ii~Q---~~v~I~~~----dt~~~L~~r~~~~E~~--- 261 (286)
T PRK13011 194 HHS--FLPGFKGAKPYHQAYERGVKLIGATAHYVTDDLDEGPIIEQ---DVERVDHA----YSPEDLVAKGRDVECL--- 261 (286)
T ss_pred ccc--cCCCCCCCcHHHHHHHCCCCeEEEEEEEEcCCCcCCCcEEE---EEEEcCCC----CCHHHHHHHHHHHHHH---
Confidence 455 5555679999999999999998877542 33333333333 22334444 4899999998875321
Q ss_pred HHHHHHHHHHH
Q 045267 436 KEVRNKMKDLK 446 (482)
Q Consensus 436 ~~~r~~a~~l~ 446 (482)
-|-+..+.+.
T Consensus 262 -~~~~ai~~~~ 271 (286)
T PRK13011 262 -TLARAVKAHI 271 (286)
T ss_pred -HHHHHHHHHH
Confidence 4544444443
No 416
>PRK13057 putative lipid kinase; Reviewed
Probab=25.42 E-value=1.1e+02 Score=29.11 Aligned_cols=30 Identities=20% Similarity=0.212 Sum_probs=24.2
Q ss_pred hcccccccccccCchhHHHHh----hcCCcEeeccc
Q 045267 357 SHGSTGGFLCHCGWNSVLESV----VNGVPLIAWPL 388 (482)
Q Consensus 357 ~~~~~~~~I~HGG~gs~~eal----~~GvP~v~~P~ 388 (482)
...+ .+|--||-||+.|++ ..++|+-++|.
T Consensus 49 ~~~d--~iiv~GGDGTv~~v~~~l~~~~~~lgiiP~ 82 (287)
T PRK13057 49 DGVD--LVIVGGGDGTLNAAAPALVETGLPLGILPL 82 (287)
T ss_pred cCCC--EEEEECchHHHHHHHHHHhcCCCcEEEECC
Confidence 3455 889999999999885 34789999995
No 417
>PF14336 DUF4392: Domain of unknown function (DUF4392)
Probab=25.19 E-value=1.1e+02 Score=29.39 Aligned_cols=42 Identities=14% Similarity=0.116 Sum_probs=29.1
Q ss_pred CCEEEEEcCCCCCChHH--------HHHHHHHHHhcCCCEEEEEcCCCCCC
Q 045267 10 APHIVLLPSPGMGHLIP--------LIEFAKRLVHRHHFLVTFFIPSDGPP 52 (482)
Q Consensus 10 ~~~ili~~~~~~GH~~P--------~l~La~~L~~r~GH~Vt~~~~~~~~~ 52 (482)
..+|+|++..-..|..+ .+.||++|.+. |-+|+++|.+...+
T Consensus 40 ~~~VlI~TGFpv~~~~~~ETDGP~GA~aLa~aL~~l-G~~~~ivtd~~~~~ 89 (291)
T PF14336_consen 40 AKSVLIVTGFPVPPAPPPETDGPPGAAALARALQAL-GKEVVIVTDERCAP 89 (291)
T ss_pred CCcEEEEeCCCCCCCCCCCCCChHHHHHHHHHHHHc-CCeEEEEECHHHHH
Confidence 34566666544333332 78999999886 99999999775433
No 418
>TIGR03837 efp_adjacent_2 conserved hypothetical protein, PP_1857 family. This model describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=24.95 E-value=83 Score=31.17 Aligned_cols=32 Identities=16% Similarity=0.254 Sum_probs=27.5
Q ss_pred cCCCCCChHHHHHHHHHHHhcCCCEEEEEcCC
Q 045267 17 PSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPS 48 (482)
Q Consensus 17 ~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~ 48 (482)
..-=+|++--..+||+.|++.|||+|++.+.+
T Consensus 7 VIDNyGDIGV~WRLArqLa~e~g~~VrLwvDd 38 (371)
T TIGR03837 7 VVDNYGDIGVCWRLARQLAAEHGHQVRLWVDD 38 (371)
T ss_pred eecCCcchHHHHHHHHHHHHHhCCEEEEEECC
Confidence 34457999999999999998789999999865
No 419
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=24.90 E-value=4.3e+02 Score=26.56 Aligned_cols=28 Identities=18% Similarity=0.057 Sum_probs=21.4
Q ss_pred CCCccEEEeCCCCccHHHHHHHcCCccEEEc
Q 045267 110 KATVAALVVDLFGTDAFDVAQEFNISPYIFY 140 (482)
Q Consensus 110 ~~~pD~vi~D~~~~~~~~~A~~lgIP~v~~~ 140 (482)
+.+||++|.... ....|+++|+|++...
T Consensus 353 ~~~pdl~ig~~~---~~~~a~~~gip~~~~~ 380 (406)
T cd01967 353 KLKPDLILSGIK---EKYVAQKLGIPFLDLH 380 (406)
T ss_pred hcCCCEEEeCCc---chHHHHhcCCCEEecC
Confidence 458999998774 4577889999986543
No 420
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=24.87 E-value=69 Score=33.06 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=26.7
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCC
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSD 49 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~ 49 (482)
|||+|...|-.| |+-|.+|+++ ||+||++-...
T Consensus 1 ~rVai~GaG~Ag-----L~~a~~La~~-g~~vt~~ea~~ 33 (485)
T COG3349 1 MRVAIAGAGLAG-----LAAAYELADA-GYDVTLYEARD 33 (485)
T ss_pred CeEEEEcccHHH-----HHHHHHHHhC-CCceEEEeccC
Confidence 578888877655 7889999999 99999996543
No 421
>KOG1432 consensus Predicted DNA repair exonuclease SIA1 [General function prediction only]
Probab=24.65 E-value=1.1e+02 Score=29.87 Aligned_cols=44 Identities=11% Similarity=-0.047 Sum_probs=28.1
Q ss_pred HHHHHHHHHhhCCCccEEEeCC--CCccH-HH----------HHHHcCCccEEEccc
Q 045267 99 CLRQELTSLVAKATVAALVVDL--FGTDA-FD----------VAQEFNISPYIFYPS 142 (482)
Q Consensus 99 ~l~~~l~~~~~~~~pD~vi~D~--~~~~~-~~----------~A~~lgIP~v~~~~~ 142 (482)
.-...+.++++.++||+||... ..... .. =|-..||||++.+..
T Consensus 87 nTt~F~~rvL~sE~PDlVVfTGD~i~g~~t~Da~~sl~kAvaP~I~~~IPwA~~lGN 143 (379)
T KOG1432|consen 87 NTTNFVSRVLASEKPDLVVFTGDNIFGHSTQDAATSLMKAVAPAIDRKIPWAAVLGN 143 (379)
T ss_pred cHHHHHHHHHhccCCCEEEEeCCcccccccHhHHHHHHHHhhhHhhcCCCeEEEecc
Confidence 3445677788889999998443 22111 12 234569999998765
No 422
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=24.45 E-value=82 Score=30.48 Aligned_cols=33 Identities=15% Similarity=0.130 Sum_probs=27.4
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCC
Q 045267 10 APHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPS 48 (482)
Q Consensus 10 ~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~ 48 (482)
+|+|.|+..|..|. ++|+.|.++ ||+|++....
T Consensus 4 ~m~I~iiG~G~~G~-----~lA~~l~~~-G~~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGS-----TLAGLASAN-GHRVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHH-----HHHHHHHHC-CCEEEEEeCC
Confidence 56899999888885 689999887 9999988654
No 423
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=24.27 E-value=76 Score=30.45 Aligned_cols=31 Identities=26% Similarity=0.390 Sum_probs=25.5
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcC
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIP 47 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~ 47 (482)
|+|+|+..|+.|. .+|..|.++ ||+|+++..
T Consensus 1 mkI~IiG~G~iG~-----~~a~~L~~~-g~~V~~~~r 31 (305)
T PRK12921 1 MRIAVVGAGAVGG-----TFGGRLLEA-GRDVTFLVR 31 (305)
T ss_pred CeEEEECCCHHHH-----HHHHHHHHC-CCceEEEec
Confidence 4799998888874 567889877 999999976
No 424
>TIGR00730 conserved hypothetical protein, DprA/Smf-related, family 2. This model represents one branch of a subfamily of proteins of unknown function. Both PSI-BLAST and weak hits by this model show a low level of similarity to and suggest an evolutionary relationship of the subfamily to the DprA/Smf family of DNA-processing proteins involved in chromosomal transformation with foreign DNA. Both Aquifex aeolicus and Mycobacterium leprae have one member in each of two branches of this subfamily, suggesting that the branches may have distinct functions.
Probab=24.18 E-value=1.5e+02 Score=26.21 Aligned_cols=36 Identities=11% Similarity=0.185 Sum_probs=26.0
Q ss_pred hhhhhhcccccccccccCchhHHHHhh---------cCCcEeecc
Q 045267 352 QAQVLSHGSTGGFLCHCGWNSVLESVV---------NGVPLIAWP 387 (482)
Q Consensus 352 q~~lL~~~~~~~~I~HGG~gs~~eal~---------~GvP~v~~P 387 (482)
-..+|-..+..+++--||.||+-|... +.+|++++=
T Consensus 89 Rk~~m~~~sda~I~lPGG~GTL~El~e~~~~~qlg~~~kPiil~n 133 (178)
T TIGR00730 89 RKAMMAELADAFIAMPGGFGTLEELFEVLTWAQLGIHQKPIILFN 133 (178)
T ss_pred HHHHHHHhCCEEEEcCCCcchHHHHHHHHHHHHcCCCCCCEEEEC
Confidence 344555555557778899999998733 589998874
No 425
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=24.07 E-value=1.6e+02 Score=26.22 Aligned_cols=40 Identities=18% Similarity=0.255 Sum_probs=29.0
Q ss_pred ccCCEEEEEcC--CCCCChHHHHHHHHHHHhcCCCEEEEEcCC
Q 045267 8 QAAPHIVLLPS--PGMGHLIPLIEFAKRLVHRHHFLVTFFIPS 48 (482)
Q Consensus 8 ~~~~~ili~~~--~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~ 48 (482)
+..+|++.++. ++.|-..-...||..|+++ |++|.++=..
T Consensus 14 ~~~~kvI~v~s~kgG~GKTt~a~~LA~~la~~-G~rVllID~D 55 (204)
T TIGR01007 14 GAEIKVLLITSVKPGEGKSTTSANIAVAFAQA-GYKTLLIDGD 55 (204)
T ss_pred cCCCcEEEEecCCCCCCHHHHHHHHHHHHHhC-CCeEEEEeCC
Confidence 33454444443 4558888999999999887 9999988443
No 426
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed
Probab=23.99 E-value=5.4e+02 Score=24.73 Aligned_cols=62 Identities=11% Similarity=0.020 Sum_probs=40.3
Q ss_pred ccccccCchhHHHHhhcCCcEeeccccc--cchhhHHHHHhhcceeeeeccCCCCccCHHHHHHHHHHHhc
Q 045267 363 GFLCHCGWNSVLESVVNGVPLIAWPLYA--EQKMNAVILTEDVKLALRPKANENGIVGRDEIAKVVKALME 431 (482)
Q Consensus 363 ~~I~HGG~gs~~eal~~GvP~v~~P~~~--DQ~~na~rv~~~~G~G~~l~~~~~~~~~~~~l~~ai~~vl~ 431 (482)
+.=...|.+....|+.+|+....+-.+. +..+.+..+.+ .- +.+..+ -|.++|.+.+.++-.
T Consensus 201 lLP~f~G~~~~~~ai~~G~k~tG~TvH~v~~~lD~GpII~Q-~~--v~V~~~----dt~e~L~~r~~~~E~ 264 (289)
T PRK13010 201 FLPGFKGARPYHQAHARGVKLIGATAHFVTDDLDEGPIIEQ-DV--ERVDHS----YSPEDLVAKGRDVEC 264 (289)
T ss_pred cCCCCCCCCHHHHHHHcCCCeEEEEEEEEcCCCCCCCceEE-EE--EEcCCC----CCHHHHHHHHHHHHH
Confidence 3333468999999999999998877542 44444444444 22 233334 488888888877643
No 427
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=23.95 E-value=1.3e+02 Score=26.31 Aligned_cols=36 Identities=17% Similarity=0.169 Sum_probs=25.2
Q ss_pred HHHHHhhCCCccEEEeCCCCcc---HHHHHHHcCCccEE
Q 045267 103 ELTSLVAKATVAALVVDLFGTD---AFDVAQEFNISPYI 138 (482)
Q Consensus 103 ~l~~~~~~~~pD~vi~D~~~~~---~~~~A~~lgIP~v~ 138 (482)
.+.+++++.+||+|+....... +..+|.++|.|++.
T Consensus 82 ~l~~~i~~~~p~~Vl~g~t~~g~~la~rlA~~L~~~~vs 120 (181)
T cd01985 82 ALAALIKKEKPDLILAGATSIGKQLAPRVAALLGVPQIS 120 (181)
T ss_pred HHHHHHHHhCCCEEEECCcccccCHHHHHHHHhCCCcce
Confidence 3344444458999997765543 45799999999765
No 428
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=23.87 E-value=68 Score=33.18 Aligned_cols=41 Identities=17% Similarity=0.263 Sum_probs=30.5
Q ss_pred CchhhhhccCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcC
Q 045267 1 MEQTLQAQAAPHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIP 47 (482)
Q Consensus 1 ~~~~~~~~~~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~ 47 (482)
|+.|...+..++|+|+..|..| |..|+.|.++ |++|+++=.
T Consensus 1 ~~~~~~~~~~~~VaIIGAG~aG-----L~aA~~l~~~-G~~v~vfE~ 41 (461)
T PLN02172 1 MAPAQNPINSQHVAVIGAGAAG-----LVAARELRRE-GHTVVVFER 41 (461)
T ss_pred CCCcccCCCCCCEEEECCcHHH-----HHHHHHHHhc-CCeEEEEec
Confidence 5555444456789999988666 5568888887 999999953
No 429
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=23.78 E-value=52 Score=30.78 Aligned_cols=27 Identities=15% Similarity=0.214 Sum_probs=22.2
Q ss_pred ccccccccccCchhHHHHhhc----CCcEeecc
Q 045267 359 GSTGGFLCHCGWNSVLESVVN----GVPLIAWP 387 (482)
Q Consensus 359 ~~~~~~I~HGG~gs~~eal~~----GvP~v~~P 387 (482)
++ ++|+-||-||+..|+.. ++|++.+-
T Consensus 26 ~D--lvi~iGGDGTlL~a~~~~~~~~~PvlGIN 56 (246)
T PRK04761 26 AD--VIVALGGDGFMLQTLHRYMNSGKPVYGMN 56 (246)
T ss_pred CC--EEEEECCCHHHHHHHHHhcCCCCeEEEEe
Confidence 56 99999999999988654 67888774
No 430
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the N-terminal TPP binding domain of TPP enzymes.; GO: 0030976 thiamine pyrophosphate binding; PDB: 3HWX_1 3FLM_B 3HWW_A 2JLC_A 2JLA_A 2VBG_A 2VBF_B 2Q29_A 2Q27_B 2Q28_B ....
Probab=23.76 E-value=1.6e+02 Score=25.57 Aligned_cols=26 Identities=8% Similarity=0.181 Sum_probs=20.2
Q ss_pred ccccccCc------hhHHHHhhcCCcEeeccc
Q 045267 363 GFLCHCGW------NSVLESVVNGVPLIAWPL 388 (482)
Q Consensus 363 ~~I~HGG~------gs~~eal~~GvP~v~~P~ 388 (482)
++++|.|- +++.+|...++|+|++.-
T Consensus 67 v~~~~~GpG~~n~~~~l~~A~~~~~Pvl~i~g 98 (172)
T PF02776_consen 67 VVIVTSGPGATNALTGLANAYADRIPVLVITG 98 (172)
T ss_dssp EEEEETTHHHHTTHHHHHHHHHTT-EEEEEEE
T ss_pred EEEeecccchHHHHHHHhhcccceeeEEEEec
Confidence 77888774 477889999999999874
No 431
>PRK12827 short chain dehydrogenase; Provisional
Probab=23.73 E-value=1.1e+02 Score=28.03 Aligned_cols=35 Identities=20% Similarity=0.111 Sum_probs=23.3
Q ss_pred ccCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcC
Q 045267 8 QAAPHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIP 47 (482)
Q Consensus 8 ~~~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~ 47 (482)
++.++|+|. |+.|.+- ..||+.|.++ ||+|+++..
T Consensus 4 ~~~~~ilIt--Gasg~iG--~~la~~l~~~-g~~v~~~~~ 38 (249)
T PRK12827 4 LDSRRVLIT--GGSGGLG--RAIAVRLAAD-GADVIVLDI 38 (249)
T ss_pred cCCCEEEEE--CCCChHH--HHHHHHHHHC-CCeEEEEcC
Confidence 444556554 3444443 5788999888 999988753
No 432
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=23.59 E-value=2.8e+02 Score=25.52 Aligned_cols=39 Identities=18% Similarity=0.168 Sum_probs=30.6
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCC
Q 045267 12 HIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGP 51 (482)
Q Consensus 12 ~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~ 51 (482)
-+++...|+.|-..=.+.++.+-+++ |..|.|++.+...
T Consensus 23 ~~lI~G~pGsGKT~la~~~l~~~~~~-ge~~lyvs~ee~~ 61 (237)
T TIGR03877 23 VVLLSGGPGTGKSIFSQQFLWNGLQM-GEPGIYVALEEHP 61 (237)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHc-CCcEEEEEeeCCH
Confidence 47778888889988888877665577 9999999977533
No 433
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=23.44 E-value=83 Score=32.08 Aligned_cols=32 Identities=13% Similarity=-0.010 Sum_probs=24.3
Q ss_pred HHhhCCCccEEEeCCCCccHHHHHHHcCCccEEEc
Q 045267 106 SLVAKATVAALVVDLFGTDAFDVAQEFNISPYIFY 140 (482)
Q Consensus 106 ~~~~~~~pD~vi~D~~~~~~~~~A~~lgIP~v~~~ 140 (482)
+++++.+||++|.... ...+|+++|||+..+.
T Consensus 363 ~~i~~~~pDliig~~~---~~~~a~k~giP~~~~~ 394 (421)
T cd01976 363 EFVKRLKPDLIGSGIK---EKYVFQKMGIPFRQMH 394 (421)
T ss_pred HHHHHhCCCEEEecCc---chhhhhhcCCCeEeCC
Confidence 3344569999998875 5668999999986543
No 434
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=23.38 E-value=1.2e+02 Score=27.22 Aligned_cols=39 Identities=10% Similarity=0.026 Sum_probs=26.4
Q ss_pred HHHHHHHHhhCCCccEEEeCCCC------ccHHHHHHHcCCccEE
Q 045267 100 LRQELTSLVAKATVAALVVDLFG------TDAFDVAQEFNISPYI 138 (482)
Q Consensus 100 l~~~l~~~~~~~~pD~vi~D~~~------~~~~~~A~~lgIP~v~ 138 (482)
+.+.+.++++..+||+|+.-... -.+..+|.++|.|++.
T Consensus 96 ~a~al~~~i~~~~p~lVL~~~t~~~~~grdlaprlAarLga~lvs 140 (202)
T cd01714 96 TAKALAAAIKKIGVDLILTGKQSIDGDTGQVGPLLAELLGWPQIT 140 (202)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCcccCCcCcHHHHHHHHhCCCccc
Confidence 33444444445579999977655 3356899999999664
No 435
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=23.34 E-value=3.8e+02 Score=24.53 Aligned_cols=34 Identities=12% Similarity=0.229 Sum_probs=25.7
Q ss_pred hhccCCEEEEEcCCCCCChHHHHHHHHHHHhcCCC-EEEEE
Q 045267 6 QAQAAPHIVLLPSPGMGHLIPLIEFAKRLVHRHHF-LVTFF 45 (482)
Q Consensus 6 ~~~~~~~ili~~~~~~GH~~P~l~La~~L~~r~GH-~Vt~~ 45 (482)
.++.+.+|+++..|+.|. .+|+.|++. |. +++++
T Consensus 17 ~~L~~~~VlivG~GglGs-----~va~~La~~-Gvg~i~lv 51 (228)
T cd00757 17 EKLKNARVLVVGAGGLGS-----PAAEYLAAA-GVGKLGLV 51 (228)
T ss_pred HHHhCCcEEEECCCHHHH-----HHHHHHHHc-CCCEEEEE
Confidence 355567899999998875 678889776 95 66666
No 436
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=23.32 E-value=1.3e+02 Score=27.03 Aligned_cols=39 Identities=8% Similarity=0.049 Sum_probs=25.6
Q ss_pred HHhhCCCccEEEeCCCCcc--HHHHHHHc----CCccEEEccchH
Q 045267 106 SLVAKATVAALVVDLFGTD--AFDVAQEF----NISPYIFYPSTA 144 (482)
Q Consensus 106 ~~~~~~~pD~vi~D~~~~~--~~~~A~~l----gIP~v~~~~~~~ 144 (482)
+.++.++||+||+-.-.++ +...|++. ++|++++.-.+.
T Consensus 54 ~~~e~~~pDfvi~isPNpaaPGP~kARE~l~~s~~PaiiigDaPg 98 (277)
T COG1927 54 EMLEEFNPDFVIYISPNPAAPGPKKAREILSDSDVPAIIIGDAPG 98 (277)
T ss_pred HHHHhcCCCEEEEeCCCCCCCCchHHHHHHhhcCCCEEEecCCcc
Confidence 4445679999996654443 34555553 999998766553
No 437
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=23.29 E-value=2.4e+02 Score=29.97 Aligned_cols=80 Identities=13% Similarity=0.115 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhcCCceEEEEeCCCCCCCCcccccCCCCCCCCCCchhHHhhh-cCCCeeeccccchhh---------hh
Q 045267 287 EQLNELALGLEMSEQRFLWVVRSPNNAANSTFFSVNSHKDPYDFLPKGFLDRT-KGRGMLVPSWAPQAQ---------VL 356 (482)
Q Consensus 287 ~~~~~~~~al~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~-~~~~v~~~~~ipq~~---------lL 356 (482)
...+.+++.|+..|.+.+.-+.+... ..+.+.+ ..+++++.. ..+.. -.
T Consensus 14 ~~~~~l~~~L~~~GV~~vFgvpG~~~--------------------~~l~dal~~~~~i~~i~-~~hE~~A~~~Adgyar 72 (564)
T PRK08155 14 TGAELIVRLLERQGIRIVTGIPGGAI--------------------LPLYDALSQSTQIRHIL-ARHEQGAGFIAQGMAR 72 (564)
T ss_pred cHHHHHHHHHHHcCCCEEEeCCCccc--------------------HHHHHHHhccCCceEEE-eccHHHHHHHHHHHHH
Confidence 34666888888888888877765422 1222222 112332221 11111 11
Q ss_pred hcccccccccccCch------hHHHHhhcCCcEeecc
Q 045267 357 SHGSTGGFLCHCGWN------SVLESVVNGVPLIAWP 387 (482)
Q Consensus 357 ~~~~~~~~I~HGG~g------s~~eal~~GvP~v~~P 387 (482)
..-..+++++|.|-| .+.+|-..++|+|++.
T Consensus 73 ~tg~~gv~~~t~GpG~~N~l~gl~~A~~~~~Pvl~i~ 109 (564)
T PRK08155 73 TTGKPAVCMACSGPGATNLVTAIADARLDSIPLVCIT 109 (564)
T ss_pred HcCCCeEEEECCCCcHHHHHHHHHHHHhcCCCEEEEe
Confidence 112233778787755 7899999999999985
No 438
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional
Probab=22.95 E-value=3.6e+02 Score=24.02 Aligned_cols=75 Identities=12% Similarity=0.136 Sum_probs=47.2
Q ss_pred eccccccchhhHHHHHhhcceeeeecc------------CCCCccCHHHHH----HHHHHHhcCCc-----h--HHHHHH
Q 045267 385 AWPLYAEQKMNAVILTEDVKLALRPKA------------NENGIVGRDEIA----KVVKALMEGEQ-----G--KEVRNK 441 (482)
Q Consensus 385 ~~P~~~DQ~~na~rv~~~~G~G~~l~~------------~~~~~~~~~~l~----~ai~~vl~~~~-----~--~~~r~~ 441 (482)
++|...||...-..+-+...+|+.... .. ++++.++ +-|.++|+|+. . +...+|
T Consensus 22 G~P~~dd~~LFE~L~Le~~QAGLSW~tIL~Kre~fr~aF~~---Fd~~~VA~~~e~die~Ll~d~~IIRnr~KI~Avi~N 98 (187)
T PRK10353 22 GVPETDSKKLFEMICLEGQQAGLSWITVLKKRENYRACFHQ---FDPVKVAAMQEEDVERLVQDAGIIRHRGKIQAIIGN 98 (187)
T ss_pred CCcCCCcHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHcC---CCHHHHhCCCHHHHHHHhcCchhHHhHHHHHHHHHH
Confidence 566788888877766555888877541 33 7777777 77889999873 0 123333
Q ss_pred HHHHHHHHHHHhhcCCchHHHHHHH
Q 045267 442 MKDLKDAAAAVLSENGSSTKALSQL 466 (482)
Q Consensus 442 a~~l~~~~~~a~~~~g~~~~~~~~~ 466 (482)
|+.+.+.-+ ++||-...+=.|
T Consensus 99 A~~~l~i~~----e~gSf~~ylW~f 119 (187)
T PRK10353 99 ARAYLQMEQ----NGEPFADFVWSF 119 (187)
T ss_pred HHHHHHHHH----hcCCHHHHHhhc
Confidence 334433333 577777776554
No 439
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=22.89 E-value=1.7e+02 Score=23.57 Aligned_cols=37 Identities=16% Similarity=0.108 Sum_probs=32.7
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCC
Q 045267 12 HIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSD 49 (482)
Q Consensus 12 ~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~ 49 (482)
||++..-++.|-......|++.|.++ |.+|.++-.+.
T Consensus 1 ~i~~~GkgG~GKTt~a~~la~~l~~~-g~~V~~id~D~ 37 (116)
T cd02034 1 KIAITGKGGVGKTTIAALLARYLAEK-GKPVLAIDADP 37 (116)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHC-CCcEEEEECCc
Confidence 48888999999999999999999887 99999887664
No 440
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=22.88 E-value=90 Score=24.67 Aligned_cols=32 Identities=13% Similarity=0.162 Sum_probs=21.3
Q ss_pred HHhhCCCccEEEeCCCCc---cHHHHHHHcCCccE
Q 045267 106 SLVAKATVAALVVDLFGT---DAFDVAQEFNISPY 137 (482)
Q Consensus 106 ~~~~~~~pD~vi~D~~~~---~~~~~A~~lgIP~v 137 (482)
++.++.++|+||+.+=.+ +..+..++.|||++
T Consensus 56 ~~a~~~~idlvvvGPE~pL~~Gl~D~l~~~gi~vf 90 (100)
T PF02844_consen 56 DFAKENKIDLVVVGPEAPLVAGLADALRAAGIPVF 90 (100)
T ss_dssp HHHHHTTESEEEESSHHHHHTTHHHHHHHTT-CEE
T ss_pred HHHHHcCCCEEEECChHHHHHHHHHHHHHCCCcEE
Confidence 444466999999987332 33477788899955
No 441
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=22.80 E-value=83 Score=30.84 Aligned_cols=32 Identities=22% Similarity=0.208 Sum_probs=26.3
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCC
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPS 48 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~ 48 (482)
|||.|+..|..|. .+|..|.++ ||+|+++...
T Consensus 3 mkI~IiG~G~mG~-----~~A~~L~~~-G~~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGC-----YLGGRLAAA-GADVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHH-----HHHHHHHhc-CCcEEEEecH
Confidence 5799999888884 568889887 9999999753
No 442
>COG2039 Pcp Pyrrolidone-carboxylate peptidase (N-terminal pyroglutamyl peptidase) [Posttranslational modification, protein turnover, chaperones]
Probab=22.73 E-value=3.6e+02 Score=24.09 Aligned_cols=27 Identities=19% Similarity=0.133 Sum_probs=20.4
Q ss_pred CEEEEEcCCCC--CChHHHHHHHHHHHhc
Q 045267 11 PHIVLLPSPGM--GHLIPLIEFAKRLVHR 37 (482)
Q Consensus 11 ~~ili~~~~~~--GH~~P~l~La~~L~~r 37 (482)
|+||+..|.-+ -..||....+++|-.+
T Consensus 1 ~kvLvTGFePF~~~~~NPs~e~vk~L~~~ 29 (207)
T COG2039 1 MKVLVTGFEPFGGEPINPSWEAVKELNGR 29 (207)
T ss_pred CeEEEEeccCCCCCCCChHHHHHHhcCcc
Confidence 36888888554 3589999999999544
No 443
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=22.70 E-value=1.5e+02 Score=27.91 Aligned_cols=32 Identities=22% Similarity=0.118 Sum_probs=22.6
Q ss_pred CCccEEE-eCCCC-ccHHHHHHHcCCccEEEccc
Q 045267 111 ATVAALV-VDLFG-TDAFDVAQEFNISPYIFYPS 142 (482)
Q Consensus 111 ~~pD~vi-~D~~~-~~~~~~A~~lgIP~v~~~~~ 142 (482)
..||+|| .|... ..+..=|.++|||+|.+.-+
T Consensus 156 ~~Pd~iii~d~~~~~~ai~Ea~kl~IPiIaivDT 189 (258)
T PRK05299 156 GLPDALFVVDPNKEHIAVKEARKLGIPVVAIVDT 189 (258)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHhCCCEEEEeeC
Confidence 4699887 45433 23566788999999987554
No 444
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=22.70 E-value=99 Score=32.50 Aligned_cols=34 Identities=9% Similarity=0.197 Sum_probs=25.0
Q ss_pred HHHHhhCCCccEEEeCCCCccHHHHHHHcCCccEEEc
Q 045267 104 LTSLVAKATVAALVVDLFGTDAFDVAQEFNISPYIFY 140 (482)
Q Consensus 104 l~~~~~~~~pD~vi~D~~~~~~~~~A~~lgIP~v~~~ 140 (482)
+++++++.+||+||.+.+ ...+|+++|||++.++
T Consensus 366 i~~~I~~~~pdliiGs~~---er~ia~~lgiP~~~is 399 (513)
T CHL00076 366 VGDMIARVEPSAIFGTQM---ERHIGKRLDIPCGVIS 399 (513)
T ss_pred HHHHHHhcCCCEEEECch---hhHHHHHhCCCEEEee
Confidence 344455678999999873 4556899999987644
No 445
>PRK05858 hypothetical protein; Provisional
Probab=22.69 E-value=3.6e+02 Score=28.44 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=21.4
Q ss_pred cccccccCch------hHHHHhhcCCcEeecc
Q 045267 362 GGFLCHCGWN------SVLESVVNGVPLIAWP 387 (482)
Q Consensus 362 ~~~I~HGG~g------s~~eal~~GvP~v~~P 387 (482)
++++.|.|-| .+.+|-..++|+|++.
T Consensus 69 gv~~~t~GpG~~n~~~~i~~A~~~~~Pvl~i~ 100 (542)
T PRK05858 69 GVAVLTAGPGVTNGMSAMAAAQFNQSPLVVLG 100 (542)
T ss_pred eEEEEcCCchHHHHHHHHHHHHhcCCCEEEEe
Confidence 3777787744 7899999999999985
No 446
>PRK13059 putative lipid kinase; Reviewed
Probab=22.60 E-value=2.3e+02 Score=27.15 Aligned_cols=26 Identities=23% Similarity=0.185 Sum_probs=21.8
Q ss_pred ccccccCchhHHHHh---h---cCCcEeeccc
Q 045267 363 GFLCHCGWNSVLESV---V---NGVPLIAWPL 388 (482)
Q Consensus 363 ~~I~HGG~gs~~eal---~---~GvP~v~~P~ 388 (482)
++|.-||-||+.|++ . .++|+-++|.
T Consensus 59 ~vi~~GGDGTv~evv~gl~~~~~~~~lgviP~ 90 (295)
T PRK13059 59 YILIAGGDGTVDNVVNAMKKLNIDLPIGILPV 90 (295)
T ss_pred EEEEECCccHHHHHHHHHHhcCCCCcEEEECC
Confidence 889999999988874 2 3589999996
No 447
>COG0223 Fmt Methionyl-tRNA formyltransferase [Translation, ribosomal structure and biogenesis]
Probab=22.53 E-value=2.5e+02 Score=27.25 Aligned_cols=37 Identities=14% Similarity=0.274 Sum_probs=25.3
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCC
Q 045267 10 APHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPP 52 (482)
Q Consensus 10 ~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 52 (482)
+|||+|+..|.++ ...-++|.+. ||+|.-+.+.+..+
T Consensus 1 ~mkivF~GTp~fa-----~~~L~~L~~~-~~eivaV~Tqpdkp 37 (307)
T COG0223 1 MMRIVFFGTPEFA-----VPSLEALIEA-GHEIVAVVTQPDKP 37 (307)
T ss_pred CcEEEEEcCchhh-----HHHHHHHHhC-CCceEEEEeCCCCc
Confidence 4689998877653 4455667676 89998877554333
No 448
>PRK08223 hypothetical protein; Validated
Probab=22.49 E-value=3.4e+02 Score=26.07 Aligned_cols=35 Identities=14% Similarity=0.009 Sum_probs=24.6
Q ss_pred hhhccCCEEEEEcCCCCCChHHHHHHHHHHHhcCC-CEEEEE
Q 045267 5 LQAQAAPHIVLLPSPGMGHLIPLIEFAKRLVHRHH-FLVTFF 45 (482)
Q Consensus 5 ~~~~~~~~ili~~~~~~GH~~P~l~La~~L~~r~G-H~Vt~~ 45 (482)
+.++++.+|+++.-|+.|- .+++.|++. | .+++++
T Consensus 22 Q~kL~~s~VlIvG~GGLGs-----~va~~LA~a-GVG~i~lv 57 (287)
T PRK08223 22 QQRLRNSRVAIAGLGGVGG-----IHLLTLARL-GIGKFTIA 57 (287)
T ss_pred HHHHhcCCEEEECCCHHHH-----HHHHHHHHh-CCCeEEEE
Confidence 3456667899999887763 567778776 8 455555
No 449
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=22.49 E-value=1.5e+02 Score=26.11 Aligned_cols=37 Identities=22% Similarity=0.449 Sum_probs=30.0
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCC
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPS 48 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~ 48 (482)
..++|+..++.|-..=..++++++.++ |+.|.|++..
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~-g~~v~f~~~~ 84 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRK-GYSVLFITAS 84 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEHH
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccC-CcceeEeecC
Confidence 568999999999999999999999887 9999999643
No 450
>COG0162 TyrS Tyrosyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.46 E-value=85 Score=31.66 Aligned_cols=34 Identities=24% Similarity=0.470 Sum_probs=25.9
Q ss_pred EEEEcCC---CCCChHHHHHHHHHHHhcCCCEEEEEcCC
Q 045267 13 IVLLPSP---GMGHLIPLIEFAKRLVHRHHFLVTFFIPS 48 (482)
Q Consensus 13 ili~~~~---~~GH~~P~l~La~~L~~r~GH~Vt~~~~~ 48 (482)
+.|=|.+ .-||+.|+..|.+ |++. ||+|+++...
T Consensus 37 ~GfDPTa~slHlGhlv~l~kL~~-fQ~a-Gh~~ivLigd 73 (401)
T COG0162 37 IGFDPTAPSLHLGHLVPLMKLRR-FQDA-GHKPIVLIGD 73 (401)
T ss_pred EeeCCCCCccchhhHHHHHHHHH-HHHC-CCeEEEEecc
Confidence 4444444 3399999999877 7677 9999999765
No 451
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=22.43 E-value=1.3e+02 Score=25.27 Aligned_cols=38 Identities=21% Similarity=0.402 Sum_probs=28.2
Q ss_pred CcEEEEeccCCCCCCHHHHHHHHHHHHhcCCceEEEEeC
Q 045267 271 GSVLFVSFGSGGTLSCEQLNELALGLEMSEQRFLWVVRS 309 (482)
Q Consensus 271 ~~~v~vs~GS~~~~~~~~~~~~~~al~~~~~~~i~~~~~ 309 (482)
..+|++++||-.....+.++.+++.+. .+.+++++...
T Consensus 51 ~d~vvi~lGtNd~~~~~nl~~ii~~~~-~~~~ivlv~~~ 88 (150)
T cd01840 51 RKTVVIGLGTNGPFTKDQLDELLDALG-PDRQVYLVNPH 88 (150)
T ss_pred CCeEEEEecCCCCCCHHHHHHHHHHcC-CCCEEEEEECC
Confidence 459999999976667788888888874 35677776543
No 452
>TIGR00877 purD phosphoribosylamine--glycine ligase. This enzyme appears as a monofunctional protein in prokaryotes but as part of a larger, multidomain protein in eukaryotes.
Probab=22.40 E-value=3e+02 Score=27.83 Aligned_cols=33 Identities=12% Similarity=0.329 Sum_probs=24.0
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCC
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSD 49 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~ 49 (482)
|+|+|+..|..+| .|++++.+. |+.+++++.+.
T Consensus 1 ~kiliiG~G~~~~-----~l~~~~~~~-~~~~~~~~~~~ 33 (423)
T TIGR00877 1 MKVLVIGNGGREH-----ALAWKLAQS-PLVKYVYVAPG 33 (423)
T ss_pred CEEEEECCChHHH-----HHHHHHHhC-CCccEEEEECC
Confidence 5789988887754 678888776 87777776543
No 453
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=22.39 E-value=6.3e+02 Score=25.72 Aligned_cols=49 Identities=16% Similarity=0.168 Sum_probs=31.5
Q ss_pred HHHHHHHHHHhhCCCccEEEeCCC-Ccc---HHHHH---HHcCCccEEEccchHHH
Q 045267 98 PCLRQELTSLVAKATVAALVVDLF-GTD---AFDVA---QEFNISPYIFYPSTAMC 146 (482)
Q Consensus 98 ~~l~~~l~~~~~~~~pD~vi~D~~-~~~---~~~~A---~~lgIP~v~~~~~~~~~ 146 (482)
..+...+...++..+.|.||..+. ..| +..++ ++.|||+|.+.+..+..
T Consensus 322 ~~~g~eIa~~Lk~dgVDAvILtstCgtCtrcga~m~keiE~~GIPvV~i~~~~pI~ 377 (431)
T TIGR01917 322 KQFAKEFSKELLAAGVDAVILTSTUGTCTRCGATMVKEIERAGIPVVHICTVTPIA 377 (431)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEEEEeechhHH
Confidence 345555555566779999996643 333 23333 45699999988876654
No 454
>PF03693 RHH_2: Uncharacterised protein family (UPF0156); InterPro: IPR022789 This family of proteins are about 80 amino acids in length and their function is unknown. The proteins contain a conserved GRY motif. This family appears to be related to ribbon-helix-helix DNA-binding proteins. ; PDB: 3KXE_C.
Probab=22.35 E-value=1.9e+02 Score=21.75 Aligned_cols=50 Identities=14% Similarity=0.278 Sum_probs=31.2
Q ss_pred CHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhc
Q 045267 418 GRDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKWNNN 473 (482)
Q Consensus 418 ~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~~ 473 (482)
..+.|+++|+ +|.. -..+...|++.+.+..+.|.+....++.|....+..
T Consensus 29 ~SEvvR~aLR-lle~-----~e~~~~~Lr~~l~~g~~sG~~~~~~~~~~~~~~~~~ 78 (80)
T PF03693_consen 29 ASEVVREALR-LLEE-----REAKLEALREALQEGLESGESEPFDMDDILARARRK 78 (80)
T ss_dssp HHHHHHHHHH-HHHH-----HHHHHHHHHHHHHHHHCT-EESS--HHHHHHHCCH-
T ss_pred HHHHHHHHHH-HHHH-----HHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHhh
Confidence 3577778886 4432 234556688888877777777767888888776544
No 455
>PRK05920 aromatic acid decarboxylase; Validated
Probab=22.34 E-value=1e+02 Score=27.88 Aligned_cols=37 Identities=22% Similarity=0.260 Sum_probs=28.8
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCC
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSD 49 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~ 49 (482)
+||++.-.|+.+= +=.+.+.+.|.+. ||+|.++.++.
T Consensus 4 krIllgITGsiaa-~ka~~lvr~L~~~-g~~V~vi~T~~ 40 (204)
T PRK05920 4 KRIVLAITGASGA-IYGVRLLECLLAA-DYEVHLVISKA 40 (204)
T ss_pred CEEEEEEeCHHHH-HHHHHHHHHHHHC-CCEEEEEEChh
Confidence 4566666565544 6889999999887 99999998774
No 456
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=22.33 E-value=1.4e+02 Score=28.07 Aligned_cols=36 Identities=8% Similarity=-0.002 Sum_probs=30.3
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCC
Q 045267 12 HIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPS 48 (482)
Q Consensus 12 ~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~ 48 (482)
.|.+..=|+-|-..-...||..|+++ |++|.++=-.
T Consensus 4 iIav~~KGGVGKTT~~~nLA~~la~~-G~kVLliD~D 39 (270)
T PRK13185 4 VLAVYGKGGIGKSTTSSNLSAAFAKL-GKKVLQIGCD 39 (270)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-CCeEEEEecc
Confidence 57777667889999999999999987 9999998433
No 457
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=22.25 E-value=1.8e+02 Score=24.30 Aligned_cols=38 Identities=16% Similarity=-0.032 Sum_probs=33.3
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCC
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSD 49 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~ 49 (482)
.+|++-+.++-+|-.----++..|..+ |++|..+....
T Consensus 2 ~~vvigtv~~D~HdiGk~iv~~~l~~~-GfeVi~LG~~v 39 (134)
T TIGR01501 2 KTIVLGVIGSDCHAVGNKILDHAFTNA-GFNVVNLGVLS 39 (134)
T ss_pred CeEEEEEecCChhhHhHHHHHHHHHHC-CCEEEECCCCC
Confidence 469999999999999998888889776 99999998664
No 458
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=22.12 E-value=5.5e+02 Score=25.90 Aligned_cols=32 Identities=25% Similarity=0.244 Sum_probs=24.9
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHhcCC-CEEEEEcCC
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRLVHRHH-FLVTFFIPS 48 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L~~r~G-H~Vt~~~~~ 48 (482)
++|+++..|.-|+ .+|+-|+++ | ++|+++.-.
T Consensus 2 ~~ilviGaG~Vg~-----~va~~la~~-~d~~V~iAdRs 34 (389)
T COG1748 2 MKILVIGAGGVGS-----VVAHKLAQN-GDGEVTIADRS 34 (389)
T ss_pred CcEEEECCchhHH-----HHHHHHHhC-CCceEEEEeCC
Confidence 5688888766665 578889887 8 999999743
No 459
>PRK12829 short chain dehydrogenase; Provisional
Probab=21.98 E-value=1.5e+02 Score=27.34 Aligned_cols=39 Identities=10% Similarity=0.026 Sum_probs=26.3
Q ss_pred hhhhccCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcC
Q 045267 4 TLQAQAAPHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIP 47 (482)
Q Consensus 4 ~~~~~~~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~ 47 (482)
.+..++.++++|.. +.|.+- ..+++.|.++ ||+|+.+.-
T Consensus 5 ~~~~~~~~~vlItG--a~g~iG--~~~a~~L~~~-g~~V~~~~r 43 (264)
T PRK12829 5 LLKPLDGLRVLVTG--GASGIG--RAIAEAFAEA-GARVHVCDV 43 (264)
T ss_pred HhhccCCCEEEEeC--CCCcHH--HHHHHHHHHC-CCEEEEEeC
Confidence 34456566666653 345553 6779999887 999887764
No 460
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=21.97 E-value=2e+02 Score=25.35 Aligned_cols=33 Identities=15% Similarity=-0.062 Sum_probs=23.2
Q ss_pred HHhhCCCccEEEeC-CC-CccHHHHHHHcCCccEE
Q 045267 106 SLVAKATVAALVVD-LF-GTDAFDVAQEFNISPYI 138 (482)
Q Consensus 106 ~~~~~~~pD~vi~D-~~-~~~~~~~A~~lgIP~v~ 138 (482)
+..+..++|.|++= .. .+.+..+|.++|+|++.
T Consensus 47 ~~~~~~~id~Iv~iea~Gi~~a~~vA~~Lgvp~v~ 81 (179)
T COG0503 47 ERYKDDGIDKIVTIEARGIPLAAAVALELGVPFVP 81 (179)
T ss_pred HHhcccCCCEEEEEccccchhHHHHHHHhCCCEEE
Confidence 33345589999933 32 34477899999999775
No 461
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=21.97 E-value=1.1e+02 Score=32.15 Aligned_cols=34 Identities=12% Similarity=0.122 Sum_probs=24.6
Q ss_pred HHHHhhCCCccEEEeCCCCccHHHHHHHcCCccEEEc
Q 045267 104 LTSLVAKATVAALVVDLFGTDAFDVAQEFNISPYIFY 140 (482)
Q Consensus 104 l~~~~~~~~pD~vi~D~~~~~~~~~A~~lgIP~v~~~ 140 (482)
+++.+++.+||+||.+.+ ...+|+++|||++.+.
T Consensus 354 l~~~i~~~~PdliiG~~~---er~~a~~lgiP~~~i~ 387 (519)
T PRK02910 354 VEDAIAEAAPELVLGTQM---ERHSAKRLGIPCAVIS 387 (519)
T ss_pred HHHHHHhcCCCEEEEcch---HHHHHHHcCCCEEEec
Confidence 334445668999997762 5678999999987543
No 462
>PF10093 DUF2331: Uncharacterized protein conserved in bacteria (DUF2331); InterPro: IPR016633 This entry describes a conserved hypothetical protein that typically is encoded next to the gene efp for translation elongation factor P. The function is unknown.
Probab=21.89 E-value=99 Score=30.83 Aligned_cols=32 Identities=16% Similarity=0.238 Sum_probs=27.8
Q ss_pred cCCCCCChHHHHHHHHHHHhcCCCEEEEEcCC
Q 045267 17 PSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPS 48 (482)
Q Consensus 17 ~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~ 48 (482)
..-=+|++--.-+||+.|++++|++|++.+..
T Consensus 7 VIDNfGDIGVcWRLArqLa~e~g~~VrLwvDd 38 (374)
T PF10093_consen 7 VIDNFGDIGVCWRLARQLAAEHGQQVRLWVDD 38 (374)
T ss_pred eccCCcchHHHHHHHHHHHHHhCCeEEEEECC
Confidence 33457999999999999999999999999865
No 463
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=21.78 E-value=1.6e+02 Score=27.85 Aligned_cols=98 Identities=16% Similarity=0.040 Sum_probs=50.4
Q ss_pred HHHHHHHHHh-cCCCEEEEEcCCCCCCchhhhhhhhcCCCceeEEEecCCCCCCCcchhhHHHHHHHHHhhhHHHHHHHH
Q 045267 27 LIEFAKRLVH-RHHFLVTFFIPSDGPPSEAQKSTLESLPSSINSVFLPVSLNDVAEDARAETVISLTVLRSLPCLRQELT 105 (482)
Q Consensus 27 ~l~La~~L~~-r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 105 (482)
.+..|-.|.+ .+|-+|+.++-.+...... +...++-|++-..+=.+ +. ..+.+ .......+.
T Consensus 42 AvEeAlrLke~~~~~eV~vlt~Gp~~a~~~---lr~aLAmGaDraili~d-~~-~~~~d------------~~~ta~~La 104 (260)
T COG2086 42 AVEEALRLKEKGYGGEVTVLTMGPPQAEEA---LREALAMGADRAILITD-RA-FAGAD------------PLATAKALA 104 (260)
T ss_pred HHHHHHHhhccCCCceEEEEEecchhhHHH---HHHHHhcCCCeEEEEec-cc-ccCcc------------HHHHHHHHH
Confidence 4566777877 4678899998554333111 12223333332111100 00 00110 011122344
Q ss_pred HHhhCCCccEEEeCCCCc------cHHHHHHHcCCccEEEcc
Q 045267 106 SLVAKATVAALVVDLFGT------DAFDVAQEFNISPYIFYP 141 (482)
Q Consensus 106 ~~~~~~~pD~vi~D~~~~------~~~~~A~~lgIP~v~~~~ 141 (482)
..++..++|+||+.-.+. -+..+|+.||+|++.+..
T Consensus 105 a~~~~~~~~LVl~G~qa~D~~t~qvg~~lAe~Lg~P~~t~v~ 146 (260)
T COG2086 105 AAVKKIGPDLVLTGKQAIDGDTGQVGPLLAELLGWPQVTYVS 146 (260)
T ss_pred HHHHhcCCCEEEEecccccCCccchHHHHHHHhCCceeeeEE
Confidence 444566999999654332 245899999999887644
No 464
>PRK13055 putative lipid kinase; Reviewed
Probab=21.70 E-value=2.6e+02 Score=27.44 Aligned_cols=26 Identities=15% Similarity=0.093 Sum_probs=21.6
Q ss_pred ccccccCchhHHHHhhc------CCcEeeccc
Q 045267 363 GFLCHCGWNSVLESVVN------GVPLIAWPL 388 (482)
Q Consensus 363 ~~I~HGG~gs~~eal~~------GvP~v~~P~ 388 (482)
++|--||-||+.|++.. .+|+-++|.
T Consensus 62 ~vvv~GGDGTl~evvngl~~~~~~~~LgiiP~ 93 (334)
T PRK13055 62 LIIAAGGDGTINEVVNGIAPLEKRPKMAIIPA 93 (334)
T ss_pred EEEEECCCCHHHHHHHHHhhcCCCCcEEEECC
Confidence 78889999999998743 478889996
No 465
>PF12169 DNA_pol3_gamma3: DNA polymerase III subunits gamma and tau domain III; InterPro: IPR022754 This domain is found in bacteria and eukaryotes, and is approximately 110 amino acids in length. It is found in association with PF00004 from PFAM. This domain is also present in the tau subunit before it undergoes cleavage. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. ; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G.
Probab=21.65 E-value=3.2e+02 Score=22.65 Aligned_cols=50 Identities=16% Similarity=0.340 Sum_probs=33.5
Q ss_pred ccCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHhhc
Q 045267 416 IVGRDEIAKVVKALMEGEQGKEVRNKMKDLKDAAAAVLSENGSSTKALSQLASKWNNN 473 (482)
Q Consensus 416 ~~~~~~l~~ai~~vl~~~~~~~~r~~a~~l~~~~~~a~~~~g~~~~~~~~~~~~~~~~ 473 (482)
..+.+.+.+.++.++++ ...+....+.+.+. .|-.....++++++.+++.
T Consensus 12 ~v~~~~i~~l~~ai~~~----d~~~~l~~~~~l~~----~G~d~~~~l~~L~~~~R~l 61 (143)
T PF12169_consen 12 LVDEEQIFELLDAILEG----DAAEALELLNELLE----QGKDPKQFLDDLIEYLRDL 61 (143)
T ss_dssp HTSTHHHHHHHHHHHTT-----HHHHHHHHHHHHH----CT--HHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcC----CHHHHHHHHHHHHH----hCCCHHHHHHHHHHHHHHH
Confidence 36778888888888876 45555555555554 6888888888888887764
No 466
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=21.59 E-value=6.7e+02 Score=24.03 Aligned_cols=37 Identities=22% Similarity=0.322 Sum_probs=29.0
Q ss_pred hhhhccCCEEEEEcCCCCCChHHHHHHHHHHHhcCC-CEEEEEc
Q 045267 4 TLQAQAAPHIVLLPSPGMGHLIPLIEFAKRLVHRHH-FLVTFFI 46 (482)
Q Consensus 4 ~~~~~~~~~ili~~~~~~GH~~P~l~La~~L~~r~G-H~Vt~~~ 46 (482)
+|.+|.+.+|+++..++.| ..+|+-|+.. | .+|+++=
T Consensus 13 aq~kL~~s~VLIvG~gGLG-----~EiaKnLala-GVg~itI~D 50 (286)
T cd01491 13 AMKKLQKSNVLISGLGGLG-----VEIAKNLILA-GVKSVTLHD 50 (286)
T ss_pred HHHHHhcCcEEEEcCCHHH-----HHHHHHHHHc-CCCeEEEEc
Confidence 4667777899999998887 4789999887 9 4576663
No 467
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=21.56 E-value=82 Score=27.13 Aligned_cols=30 Identities=23% Similarity=0.304 Sum_probs=23.2
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEc
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFI 46 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~ 46 (482)
++|.|+..|..| ..+|+.|.++ ||+|+..-
T Consensus 2 ~~Ig~IGlG~mG-----~~~a~~L~~~-g~~v~~~d 31 (163)
T PF03446_consen 2 MKIGFIGLGNMG-----SAMARNLAKA-GYEVTVYD 31 (163)
T ss_dssp BEEEEE--SHHH-----HHHHHHHHHT-TTEEEEEE
T ss_pred CEEEEEchHHHH-----HHHHHHHHhc-CCeEEeec
Confidence 469999988777 4789999887 99999874
No 468
>PF06180 CbiK: Cobalt chelatase (CbiK); InterPro: IPR010388 This group, typified by Salmonella typhimurium CbiK, contains anaerobic cobalt chelatases that act in the anaerobic cobalamin biosynthesis pathway [, ]. Cobalamin (vitamin B12) can be complexed with metal via ATP-dependent reactions (aerobic pathway) (e.g., in Pseudomonas denitrificans) or via ATP-independent reactions (anaerobic pathway) (e.g., in S. typhimurium) [, ]. The corresponding cobalt chelatases are not homologous. This group belongs to the class of ATP-independent, single-subunit chelatases that also includes distantly related protoporphyrin IX (PPIX) ferrochelatase (HemH) (Class II chelatases) []. The structure of S. typhimurium CbiK shows that it has a remarkably similar topology to Bacillus subtilis ferrochelatase despite only weak sequence conservation []. Both enzymes contain a histidine residue identified as the metal ion ligand, but CbiK contains a second histidine in place of the glutamic acid residue identified as a general base in PPIX ferrochelatase []. Site-directed mutagenesis has confirmed a role for this histidine and a nearby glutamic acid in cobalt binding, modulating metal ion specificity as well as catalytic efficiency []. It should be noted that CysG and Met8p, which are multifunctional proteins associated with siroheme biosynthesis, include chelatase activity and can therefore be considered as the third class of chelatases []. As with the class II chelatases, they do not require ATP for activity. However, they are not structurally similar to HemH or CbiK, and it is likely that they have arisen by the acquisition of a chelatase function within a dehydrogenase catalytic framework [, ].; GO: 0016852 sirohydrochlorin cobaltochelatase activity; PDB: 1QGO_A 2XWP_A 2XVZ_A 2XVX_A 2XVY_A.
Probab=21.44 E-value=1.5e+02 Score=28.13 Aligned_cols=38 Identities=18% Similarity=0.298 Sum_probs=23.5
Q ss_pred cEEEEeccCCCCCCHH-HHHHHHHHHHhc--CCceEEEEeC
Q 045267 272 SVLFVSFGSGGTLSCE-QLNELALGLEMS--EQRFLWVVRS 309 (482)
Q Consensus 272 ~~v~vs~GS~~~~~~~-~~~~~~~al~~~--~~~~i~~~~~ 309 (482)
.+++|||||......+ -+..+.+.++.. +..+-|++.+
T Consensus 2 AIllvsFGTs~~~ar~~ti~~ie~~~~~~fp~~~V~~AfTS 42 (262)
T PF06180_consen 2 AILLVSFGTSYPEAREKTIDAIEKAVREAFPDYDVRRAFTS 42 (262)
T ss_dssp EEEEEE---S-CCCCHHHHHHHHHHHHHCSTTSEEEEEES-
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEchH
Confidence 4899999997655444 677777777655 6688888754
No 469
>KOG0832 consensus Mitochondrial/chloroplast ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=21.41 E-value=84 Score=28.77 Aligned_cols=112 Identities=13% Similarity=0.048 Sum_probs=57.2
Q ss_pred CCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCCchhhhhhhhcCCCceeEEEec--CCCCCCCcchhhHHHHHHHHHhhh
Q 045267 20 GMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPPSEAQKSTLESLPSSINSVFLP--VSLNDVAEDARAETVISLTVLRSL 97 (482)
Q Consensus 20 ~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~ 97 (482)
+..|+...+.+...++.+ |=.+.|++...... .+++..+.+.+-+... +...-+...-...+.+.. ..
T Consensus 90 T~~~Lr~A~~fVa~vA~r-~GiILFv~tn~~~~-----~~ve~aA~r~~gy~~~~~w~~G~lTN~~~l~g~~~~----~~ 159 (251)
T KOG0832|consen 90 TASYLRRALNFVAHVAHR-GGIILFVGTNNGFK-----DLVERAARRAGGYSHNRKWLGGLLTNARELFGALVR----KF 159 (251)
T ss_pred HHHHHHHHHHHHHHHHhc-CCeEEEEecCcchH-----HHHHHHHHHhcCceeeeeeccceeecchhhcccccc----cc
Confidence 447888899999999998 99999998765333 2222222222222222 111111111111111111 00
Q ss_pred HHHHHHHHHHhhCCCccEEEe-CCCC-ccHHHHHHHcCCccEEEccc
Q 045267 98 PCLRQELTSLVAKATVAALVV-DLFG-TDAFDVAQEFNISPYIFYPS 142 (482)
Q Consensus 98 ~~l~~~l~~~~~~~~pD~vi~-D~~~-~~~~~~A~~lgIP~v~~~~~ 142 (482)
..+-+ ...+.....+|+||+ |..- ..+..=|.+++||+|.+.=+
T Consensus 160 ~~~pd-~~~f~~t~~~D~vvvln~~e~~sAilEA~K~~IPTIgIVDt 205 (251)
T KOG0832|consen 160 LSLPD-ALCFLPTLTPDLVVVLNPEENHSAILEAAKMAIPTIGIVDT 205 (251)
T ss_pred cCCCc-ceeecccCCcceeEecCcccccHHHHHHHHhCCCeEEEecC
Confidence 00101 112334567898874 4433 34667788999999986543
No 470
>PRK09354 recA recombinase A; Provisional
Probab=21.29 E-value=3e+02 Score=27.25 Aligned_cols=40 Identities=5% Similarity=-0.050 Sum_probs=32.4
Q ss_pred EEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCC
Q 045267 12 HIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPP 52 (482)
Q Consensus 12 ~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 52 (482)
.+.|+..++.|-.+=.+.++.+.+++ |-.+.|+..+...+
T Consensus 62 IteI~G~~GsGKTtLal~~~~~~~~~-G~~~~yId~E~s~~ 101 (349)
T PRK09354 62 IVEIYGPESSGKTTLALHAIAEAQKA-GGTAAFIDAEHALD 101 (349)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEECCccchH
Confidence 46677777889999999999888777 99999998775443
No 471
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=21.09 E-value=1.5e+02 Score=29.76 Aligned_cols=50 Identities=16% Similarity=0.229 Sum_probs=34.3
Q ss_pred cCCcEeeccccccchhhHH-HHHhhcceeeee---ccCCCCccCHHHHHHHHHHH
Q 045267 379 NGVPLIAWPLYAEQKMNAV-ILTEDVKLALRP---KANENGIVGRDEIAKVVKAL 429 (482)
Q Consensus 379 ~GvP~v~~P~~~DQ~~na~-rv~~~~G~G~~l---~~~~~~~~~~~~l~~ai~~v 429 (482)
.|||+|-+-+..|-..+-. ..++ .|-|..- -.++.+++|+++|.+-|++.
T Consensus 499 RGvpqIEVtFevDangiL~VsAeD-Kgtg~~~kitItNd~~rLt~EdIerMv~eA 552 (663)
T KOG0100|consen 499 RGVPQIEVTFEVDANGILQVSAED-KGTGKKEKITITNDKGRLTPEDIERMVNEA 552 (663)
T ss_pred CCCccEEEEEEEccCceEEEEeec-cCCCCcceEEEecCCCCCCHHHHHHHHHHH
Confidence 4789998888777665544 3344 6666432 23445679999999999876
No 472
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=21.06 E-value=6.4e+02 Score=25.67 Aligned_cols=49 Identities=12% Similarity=0.139 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhCCCccEEEeCCC-Ccc---HHHHH---HHcCCccEEEccchHHH
Q 045267 98 PCLRQELTSLVAKATVAALVVDLF-GTD---AFDVA---QEFNISPYIFYPSTAMC 146 (482)
Q Consensus 98 ~~l~~~l~~~~~~~~pD~vi~D~~-~~~---~~~~A---~~lgIP~v~~~~~~~~~ 146 (482)
.++...+.+.++..+.|.||..+. ..| +..++ ++.|||+|.+.+..+..
T Consensus 322 ~~~g~eIa~~Lk~dgVDAVILTstCgtC~r~~a~m~keiE~~GiPvv~~~~~~pis 377 (431)
T TIGR01918 322 KQFAKEFVVELKQGGVDAVILTSTUGTCTRCGATMVKEIERAGIPVVHMCTVIPIA 377 (431)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHHcCCCEEEEeecccHh
Confidence 344555555566779999996643 333 23333 45699999988866554
No 473
>COG0143 MetG Methionyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.02 E-value=1.4e+02 Score=31.67 Aligned_cols=38 Identities=29% Similarity=0.558 Sum_probs=27.3
Q ss_pred CEEEEEcC-------CCCCChHHHHH---HHHHHHhcCCCEEEEEcCCC
Q 045267 11 PHIVLLPS-------PGMGHLIPLIE---FAKRLVHRHHFLVTFFIPSD 49 (482)
Q Consensus 11 ~~ili~~~-------~~~GH~~P~l~---La~~L~~r~GH~Vt~~~~~~ 49 (482)
++++|.+. +..||+.++++ +|+-+..+ ||+|.|+|...
T Consensus 5 ~~~~VTtalpY~Ng~~HlGH~~~~l~ADv~aRy~Rl~-G~~v~fvtGtD 52 (558)
T COG0143 5 KKILVTTALPYPNGPPHLGHLYTYLAADVYARYLRLR-GYEVFFLTGTD 52 (558)
T ss_pred CcEEEecCCCCCCCCcchhhHHHHHHHHHHHHHHHhc-CCeEEEEeccC
Confidence 34666543 45599998774 67777666 99999999654
No 474
>CHL00067 rps2 ribosomal protein S2
Probab=20.90 E-value=2.2e+02 Score=26.35 Aligned_cols=33 Identities=6% Similarity=0.043 Sum_probs=23.2
Q ss_pred CCccEEEeCCCCc--cHHHHHHHcCCccEEEccch
Q 045267 111 ATVAALVVDLFGT--DAFDVAQEFNISPYIFYPST 143 (482)
Q Consensus 111 ~~pD~vi~D~~~~--~~~~~A~~lgIP~v~~~~~~ 143 (482)
..||+||+-...- -+..=|.++|||++.+.-+.
T Consensus 160 ~~P~~iiv~d~~~~~~ai~Ea~~l~IPvIaivDTn 194 (230)
T CHL00067 160 KLPDIVIIIDQQEEYTALRECRKLGIPTISILDTN 194 (230)
T ss_pred cCCCEEEEeCCcccHHHHHHHHHcCCCEEEEEeCC
Confidence 4699888544333 35677889999999876543
No 475
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=20.88 E-value=3.6e+02 Score=29.98 Aligned_cols=42 Identities=21% Similarity=0.253 Sum_probs=36.0
Q ss_pred CCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCCCCC
Q 045267 10 APHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSDGPP 52 (482)
Q Consensus 10 ~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~~~~ 52 (482)
|+||.|=..|+-|-.+.||.=|+++.++ |.+|.+..-+.+..
T Consensus 22 klkIf~G~apGVGKTyaML~~a~~~~~~-G~DvviG~vEtHgR 63 (890)
T COG2205 22 KLKIFLGAAPGVGKTYAMLSEAQRLLAE-GVDVVIGVVETHGR 63 (890)
T ss_pred ceEEEeecCCCccHHHHHHHHHHHHHHc-CCcEEEEEecCCCc
Confidence 4678888888999999999999999998 99999998765433
No 476
>COG0151 PurD Phosphoribosylamine-glycine ligase [Nucleotide transport and metabolism]
Probab=20.82 E-value=3.1e+02 Score=27.84 Aligned_cols=29 Identities=17% Similarity=0.384 Sum_probs=21.8
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEE
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFF 45 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~ 45 (482)
|+|+++..|++-| +||+.|++. +---.++
T Consensus 1 mkVLviGsGgREH-----AiA~~la~s-~~v~~~~ 29 (428)
T COG0151 1 MKVLVIGSGGREH-----ALAWKLAQS-PLVLYVY 29 (428)
T ss_pred CeEEEEcCCchHH-----HHHHHHhcC-CceeEEE
Confidence 6899999999999 578999765 5333333
No 477
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=20.67 E-value=1.1e+02 Score=28.08 Aligned_cols=32 Identities=16% Similarity=0.219 Sum_probs=25.3
Q ss_pred CEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCC
Q 045267 11 PHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPS 48 (482)
Q Consensus 11 ~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~ 48 (482)
|+|+++.-|-.| ..+|+.|.++ ||+|+.+-..
T Consensus 1 m~iiIiG~G~vG-----~~va~~L~~~-g~~Vv~Id~d 32 (225)
T COG0569 1 MKIIIIGAGRVG-----RSVARELSEE-GHNVVLIDRD 32 (225)
T ss_pred CEEEEECCcHHH-----HHHHHHHHhC-CCceEEEEcC
Confidence 457777777666 5799999988 9999999644
No 478
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=20.66 E-value=2e+02 Score=29.56 Aligned_cols=22 Identities=23% Similarity=0.287 Sum_probs=18.5
Q ss_pred ccccchhhhhhcccccccccccCc
Q 045267 347 PSWAPQAQVLSHGSTGGFLCHCGW 370 (482)
Q Consensus 347 ~~~ipq~~lL~~~~~~~~I~HGG~ 370 (482)
++|+=|-+.=.+++ .|+|.||-
T Consensus 326 iD~VvQ~DpP~~~~--~FvHR~GR 347 (567)
T KOG0345|consen 326 IDLVVQFDPPKDPS--SFVHRCGR 347 (567)
T ss_pred ceEEEecCCCCChh--HHHhhcch
Confidence 37888888778899 99999994
No 479
>COG0129 IlvD Dihydroxyacid dehydratase/phosphogluconate dehydratase [Amino acid transport and metabolism / Carbohydrate transport and metabolism]
Probab=20.41 E-value=4.1e+02 Score=28.17 Aligned_cols=45 Identities=11% Similarity=0.183 Sum_probs=32.9
Q ss_pred HHHHHHHHHhhCCCccEEE----eCCCCccHHHHHHHcCCccEEEccch
Q 045267 99 CLRQELTSLVAKATVAALV----VDLFGTDAFDVAQEFNISPYIFYPST 143 (482)
Q Consensus 99 ~l~~~l~~~~~~~~pD~vi----~D~~~~~~~~~A~~lgIP~v~~~~~~ 143 (482)
.+...++..+....+|.+| ||-..++...+|..++||.|.+...+
T Consensus 107 lIAds~e~~~~~~~~Da~V~i~~CDKi~PG~lmaa~r~niPaIfv~gGp 155 (575)
T COG0129 107 LIADSVEEVLSAHPFDGVVLIGGCDKITPGMLMAAARLNIPAIFVSGGP 155 (575)
T ss_pred HHHHHHHHHHhccCcceEEEecCCCCccHHHHHHHHhcCCCEEEecCCc
Confidence 3344455555667899887 77778878888999999988776543
No 480
>PLN02293 adenine phosphoribosyltransferase
Probab=20.34 E-value=2.4e+02 Score=25.09 Aligned_cols=30 Identities=7% Similarity=-0.137 Sum_probs=20.8
Q ss_pred hCCCccEEEeC-CCC-ccHHHHHHHcCCccEE
Q 045267 109 AKATVAALVVD-LFG-TDAFDVAQEFNISPYI 138 (482)
Q Consensus 109 ~~~~pD~vi~D-~~~-~~~~~~A~~lgIP~v~ 138 (482)
+..++|+|+.= ... +.+..+|..+|+|++.
T Consensus 59 ~~~~~d~Ivg~e~~Gi~lA~~lA~~Lg~p~v~ 90 (187)
T PLN02293 59 RDMGISVVAGIEARGFIFGPPIALAIGAKFVP 90 (187)
T ss_pred hhcCCCEEEEeCCCchHHHHHHHHHHCCCEEE
Confidence 34578999843 333 3466899999999664
No 481
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=20.32 E-value=1.3e+02 Score=28.24 Aligned_cols=42 Identities=19% Similarity=0.104 Sum_probs=26.1
Q ss_pred CchhhhhccCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcC
Q 045267 1 MEQTLQAQAAPHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIP 47 (482)
Q Consensus 1 ~~~~~~~~~~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~ 47 (482)
|..|+..++.+ .++++.++.| + =..+++.|.++ |++|.++..
T Consensus 1 ~~~~~~~~~~k-~vlVtGas~g-i--G~~ia~~l~~~-G~~V~~~~r 42 (278)
T PRK08277 1 MMPNLFSLKGK-VAVITGGGGV-L--GGAMAKELARA-GAKVAILDR 42 (278)
T ss_pred CCCceeccCCC-EEEEeCCCch-H--HHHHHHHHHHC-CCEEEEEeC
Confidence 44444445444 4555544432 2 27888999887 999988764
No 482
>COG2099 CobK Precorrin-6x reductase [Coenzyme metabolism]
Probab=20.32 E-value=6.7e+02 Score=23.57 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=29.6
Q ss_pred cccchhhHHHHHhhcceeeeeccCCCCc-cCHHHHHHHHH
Q 045267 389 YAEQKMNAVILTEDVKLALRPKANENGI-VGRDEIAKVVK 427 (482)
Q Consensus 389 ~~DQ~~na~rv~~~~G~G~~l~~~~~~~-~~~~~l~~ai~ 427 (482)
-+.+..|.+.+++ +++...+.++.++. -+.+++..+.+
T Consensus 182 Pfs~~~n~all~q-~~id~vItK~SG~~Gg~~~Ki~aA~e 220 (257)
T COG2099 182 PFSEEDNKALLEQ-YRIDVVVTKNSGGAGGTYEKIEAARE 220 (257)
T ss_pred CcChHHHHHHHHH-hCCCEEEEccCCcccCcHHHHHHHHH
Confidence 4688999999999 99999998766444 56777776653
No 483
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=20.30 E-value=1.4e+02 Score=27.71 Aligned_cols=46 Identities=13% Similarity=0.176 Sum_probs=31.6
Q ss_pred EeeccccccchhhHHHHHhhcceeeeecc-----CCCCccCHHHHHHHHHHH
Q 045267 383 LIAWPLYAEQKMNAVILTEDVKLALRPKA-----NENGIVGRDEIAKVVKAL 429 (482)
Q Consensus 383 ~v~~P~~~DQ~~na~rv~~~~G~G~~l~~-----~~~~~~~~~~l~~ai~~v 429 (482)
..++|+..|-+..|+|+++ .||....+. ...|..++..|+..++++
T Consensus 124 F~VlPY~~~D~v~akrL~d-~GcaavMPlgsPIGSg~Gi~n~~~l~~i~~~~ 174 (247)
T PF05690_consen 124 FVVLPYCTDDPVLAKRLED-AGCAAVMPLGSPIGSGRGIQNPYNLRIIIERA 174 (247)
T ss_dssp -EEEEEE-S-HHHHHHHHH-TT-SEBEEBSSSTTT---SSTHHHHHHHHHHG
T ss_pred CEEeecCCCCHHHHHHHHH-CCCCEEEecccccccCcCCCCHHHHHHHHHhc
Confidence 3589999999999999999 999976542 335667888888777665
No 484
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=20.22 E-value=1.3e+02 Score=31.68 Aligned_cols=35 Identities=9% Similarity=0.072 Sum_probs=25.5
Q ss_pred HHHHhhCCCccEEEeCCCCccHHHHHHHcCCccEEEcc
Q 045267 104 LTSLVAKATVAALVVDLFGTDAFDVAQEFNISPYIFYP 141 (482)
Q Consensus 104 l~~~~~~~~pD~vi~D~~~~~~~~~A~~lgIP~v~~~~ 141 (482)
+++.+++.+||+||.+.+ ...+|+++|||++.+..
T Consensus 356 i~~~i~~~~pdliiG~~~---er~~a~~lgip~~~i~~ 390 (511)
T TIGR01278 356 VADAIAALEPELVLGTQM---ERHSAKRLDIPCGVISA 390 (511)
T ss_pred HHHHHHhcCCCEEEEChH---HHHHHHHcCCCEEEecC
Confidence 344455668999999873 56789999999876433
No 485
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=20.12 E-value=1.8e+02 Score=24.04 Aligned_cols=37 Identities=16% Similarity=0.136 Sum_probs=25.9
Q ss_pred hhccCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCC
Q 045267 6 QAQAAPHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPS 48 (482)
Q Consensus 6 ~~~~~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~ 48 (482)
++..+++|.|+..|--|- .|++.|.++ ||+|+-+...
T Consensus 6 ~~~~~l~I~iIGaGrVG~-----~La~aL~~a-g~~v~~v~sr 42 (127)
T PF10727_consen 6 TQAARLKIGIIGAGRVGT-----ALARALARA-GHEVVGVYSR 42 (127)
T ss_dssp ------EEEEECTSCCCC-----HHHHHHHHT-TSEEEEESSC
T ss_pred cCCCccEEEEECCCHHHH-----HHHHHHHHC-CCeEEEEEeC
Confidence 455678999999887774 689999887 9999888654
No 486
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=20.10 E-value=1.2e+02 Score=30.70 Aligned_cols=40 Identities=25% Similarity=0.233 Sum_probs=31.1
Q ss_pred ccCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEEcCCC
Q 045267 8 QAAPHIVLLPSPGMGHLIPLIEFAKRLVHRHHFLVTFFIPSD 49 (482)
Q Consensus 8 ~~~~~ili~~~~~~GH~~P~l~La~~L~~r~GH~Vt~~~~~~ 49 (482)
|..++|++...|+. ..+=...+.+.|.+. |++|.++.++.
T Consensus 4 l~~k~IllgvTGsi-aa~k~~~lv~~L~~~-g~~V~vv~T~~ 43 (399)
T PRK05579 4 LAGKRIVLGVSGGI-AAYKALELVRRLRKA-GADVRVVMTEA 43 (399)
T ss_pred CCCCeEEEEEeCHH-HHHHHHHHHHHHHhC-CCEEEEEECHh
Confidence 44567887777766 455778999999887 99999998774
No 487
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=20.05 E-value=2.1e+02 Score=26.40 Aligned_cols=32 Identities=16% Similarity=0.097 Sum_probs=22.5
Q ss_pred CCccEEE-eCCCC-ccHHHHHHHcCCccEEEccc
Q 045267 111 ATVAALV-VDLFG-TDAFDVAQEFNISPYIFYPS 142 (482)
Q Consensus 111 ~~pD~vi-~D~~~-~~~~~~A~~lgIP~v~~~~~ 142 (482)
..||+|| .|... ..+..=|.++|||++.+.-+
T Consensus 154 ~~Pd~vii~d~~~~~~ai~Ea~~l~IP~I~ivDT 187 (225)
T TIGR01011 154 KLPDLLFVIDPVKEKIAVAEARKLGIPVVAIVDT 187 (225)
T ss_pred cCCCEEEEeCCCccHHHHHHHHHcCCCEEEEeeC
Confidence 4799887 45432 23566788899999987554
Done!