BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045269
(99 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
pdb|2P9G|B Chain B, Crystal Structure Of Serine Bound G336v,G337v Double
Mutant Of E.Coli Phosphoglycerate Dehydrogenase
Length = 410
Score = 57.0 bits (136), Expect = 2e-09, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 5/93 (5%)
Query: 8 SLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPND----PILKFQSVLITPH 63
SLL+N RG ++D A+A L S HL G +DV TEP +D P+ +F +VL+TPH
Sbjct: 233 SLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPH 292
Query: 64 VGGVTEHSYRSTA-KVVGDVALQLHAGTPLTGI 95
+GG T+ + + +V G + G+ L+ +
Sbjct: 293 IGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAV 325
>pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9C|B Chain B, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|A Chain A, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|B Chain B, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|C Chain C, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2P9E|D Chain D, Crystal Structure Of G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
pdb|2PA3|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli
Phosphoglycerate Dehydrogenase
Length = 410
Score = 57.0 bits (136), Expect = 2e-09, Method: Composition-based stats.
Identities = 34/93 (36%), Positives = 53/93 (56%), Gaps = 5/93 (5%)
Query: 8 SLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPND----PILKFQSVLITPH 63
SLL+N RG ++D A+A L S HL G +DV TEP +D P+ +F +VL+TPH
Sbjct: 233 SLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPH 292
Query: 64 VGGVTEHSYRSTA-KVVGDVALQLHAGTPLTGI 95
+GG T+ + + +V G + G+ L+ +
Sbjct: 293 IGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAV 325
>pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|B Chain B, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|C Chain C, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
pdb|1SC6|D Chain D, Crystal Structure Of W139g D-3-Phosphoglycerate
Dehydrogenase Complexed With Nad+
Length = 404
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 44/71 (61%), Gaps = 4/71 (5%)
Query: 8 SLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPND----PILKFQSVLITPH 63
SLL+N RG ++D A+A L S HL G +DV TEP +D P+ +F +VL+TPH
Sbjct: 227 SLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPH 286
Query: 64 VGGVTEHSYRS 74
+GG T+ + +
Sbjct: 287 IGGSTQEAQEN 297
>pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
pdb|1PSD|B Chain B, The Allosteric Ligand Site In The Vmax-Type Cooperative
Enzyme Phosphoglycerate Dehydrogenase
Length = 409
Score = 55.8 bits (133), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 5/93 (5%)
Query: 8 SLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPND----PILKFQSVLITPH 63
SLL+N RG ++D A+ L S HL G +DV TEP +D P+ +F +VL+TPH
Sbjct: 232 SLLINASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPH 291
Query: 64 VGGVTEHSYRSTA-KVVGDVALQLHAGTPLTGI 95
+GG T+ + + +V G + G+ L+ +
Sbjct: 292 IGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAV 324
>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
pdb|1WWK|B Chain B, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Pyrococcus Horikoshii Ot3
Length = 307
Score = 55.5 bits (132), Expect = 7e-09, Method: Composition-based stats.
Identities = 26/83 (31%), Positives = 46/83 (55%)
Query: 7 SSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGG 66
+++L+N RG ++D A+ L+ G + G GLDV EP + P+ KF +V++TPH+G
Sbjct: 225 TAILINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGA 284
Query: 67 VTEHSYRSTAKVVGDVALQLHAG 89
T + V + +++ G
Sbjct: 285 STVEAQERAGVEVAEKVVKILKG 307
>pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|B Chain B, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|C Chain C, The Active Form Of Phosphoglycerate Dehydrogenase
pdb|1YBA|D Chain D, The Active Form Of Phosphoglycerate Dehydrogenase
Length = 410
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 52/93 (55%), Gaps = 5/93 (5%)
Query: 8 SLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPND----PILKFQSVLITPH 63
SLL+N RG ++D A+ L S HL G +DV TEP +D P+ +F +VL+TPH
Sbjct: 233 SLLINASRGTVVDIPALCDALASKHLAGAAIDVFPTEPATNSDPFTSPLCEFDNVLLTPH 292
Query: 64 VGGVTEHSYRSTA-KVVGDVALQLHAGTPLTGI 95
+GG T+ + + +V G + G+ L+ +
Sbjct: 293 IGGSTQEAQENIGLEVAGKLIKYSDNGSTLSAV 325
>pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|B Chain B, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|C Chain C, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
pdb|2CUK|D Chain D, Crystal Structure Of Tt0316 Protein From Thermus
Thermophilus Hb8
Length = 311
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 51/92 (55%), Gaps = 6/92 (6%)
Query: 8 SLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGGV 67
++L+N RG L+D EA+ L GHL G GLDV EP P P+ + +ITPH+G
Sbjct: 223 AILLNTARGALVDTEALVEAL-RGHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGS- 280
Query: 68 TEHSYRSTAKVVGDVALQLHAGTPLTGIEPVN 99
+ R+T + + +VA++ L G EP N
Sbjct: 281 ---AGRTTRERMAEVAVENLLAV-LEGREPPN 308
>pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41)
Length = 334
Score = 53.1 bits (126), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 7 SSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGG 66
+++L+NI RG ++D A+ L+ G + G GLDV EP+ N+ + K +V++TPH+G
Sbjct: 233 TAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPY-YNEELFKLDNVVLTPHIGS 291
Query: 67 VTEHSYRSTAKVVG 80
+ + A++V
Sbjct: 292 ASFGAREGXAELVA 305
>pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|C Chain C, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|D Chain D, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|E Chain E, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBR|F Chain F, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1)
pdb|2DBZ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
pdb|2DBZ|B Chain B, Crystal Structure Of Glyoxylate Reductase (Ph0597) From
Pyrococcus Horikoshii Ot3, Complexed With Nadp (P61)
Length = 334
Score = 52.8 bits (125), Expect = 4e-08, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 45/74 (60%), Gaps = 1/74 (1%)
Query: 7 SSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGG 66
+++L+NI RG ++D A+ L+ G + G GLDV EP+ N+ + K +V++TPH+G
Sbjct: 233 TAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEPY-YNEELFKLDNVVLTPHIGS 291
Query: 67 VTEHSYRSTAKVVG 80
+ + A++V
Sbjct: 292 ASFGAREGMAELVA 305
>pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer
Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain
From Brucella Melitensis
Length = 416
Score = 52.8 bits (125), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 1 MSDVCTSSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPND----PILKFQ 56
+ + + L+N RG +D EA+A L+ GHL G +DV EP + P+ +
Sbjct: 231 LRKMKKGAFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLE 290
Query: 57 SVLITPHVGGVTEHS 71
+V++TPH+GG TE +
Sbjct: 291 NVILTPHIGGSTEEA 305
>pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
pdb|3DDN|B Chain B, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound
D-3- Phosphoglycerate Dehydrogenase In Mycobacterium
Tuberculosis
Length = 528
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 9 LLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGGVT 68
++VN RGGL+D A+A + GH+ GLDV TEP + P+ + V++TPH+G T
Sbjct: 226 IIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPC-TDSPLFELAQVVVTPHLGAST 284
Query: 69 -EHSYRSTAKVVGDVALQL 86
E R+ V V L L
Sbjct: 285 AEAQDRAGTDVAESVRLAL 303
>pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|1YGY|B Chain B, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase
From Mycobacterium Tuberculosis
pdb|3DC2|A Chain A, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
pdb|3DC2|B Chain B, Crystal Structure Of Serine Bound D-3-Phosphoglycerate
Dehydrogenase From Mycobacterium Tuberculosis
Length = 529
Score = 52.8 bits (125), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/79 (39%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 9 LLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGGVT 68
++VN RGGL+D A+A + GH+ GLDV TEP + P+ + V++TPH+G T
Sbjct: 227 IIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPC-TDSPLFELAQVVVTPHLGAST 285
Query: 69 -EHSYRSTAKVVGDVALQL 86
E R+ V V L L
Sbjct: 286 AEAQDRAGTDVAESVRLAL 304
>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|B Chain B, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|C Chain C, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2GCG|D Chain D, Ternary Crystal Structure Of Human Glyoxylate
ReductaseHYDROXYPYRUVATE REDUCTASE
pdb|2WWR|A Chain A, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|B Chain B, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|C Chain C, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
pdb|2WWR|D Chain D, Crystal Structure Of Human Glyoxylate Reductase
Hydroxypyruvate Reductase
Length = 330
Score = 51.2 bits (121), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/86 (27%), Positives = 45/86 (52%)
Query: 7 SSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGG 66
+++ +NI RG +++ + + L SG + GLDV EP N P+L ++ +I PH+G
Sbjct: 239 TAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGS 298
Query: 67 VTEHSYRSTAKVVGDVALQLHAGTPL 92
T + + + + + L G P+
Sbjct: 299 ATHRTRNTMSLLAANNLLAGLRGEPM 324
>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|B Chain B, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|C Chain C, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2H1S|D Chain D, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE
FROM HOMO Sapiens
pdb|2Q50|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|C Chain C, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
pdb|2Q50|D Chain D, Ensemble Refinement Of The Protein Crystal Structure Of A
GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO SAPIENS
Length = 328
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 7 SSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGG 66
+++ +NI RG +++ + + L SG + GLDV EP N P+L ++ +I PH+G
Sbjct: 237 TAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGS 296
Query: 67 VTEHSYRSTAKVVG 80
T H R+T ++
Sbjct: 297 AT-HRTRNTXSLLA 309
>pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From
Acidaminococcus Fermentans
Length = 331
Score = 48.1 bits (113), Expect = 1e-06, Method: Composition-based stats.
Identities = 31/85 (36%), Positives = 46/85 (54%), Gaps = 14/85 (16%)
Query: 8 SLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEP--FDPN-------DPILK---- 54
++LVN RG L+D EAV +ESG LGG G DV E F + +P+ +
Sbjct: 228 AILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVD 287
Query: 55 -FQSVLITPHVGGVTEHSYRSTAKV 78
+ VLITPH+G T+ + ++ +V
Sbjct: 288 LYPRVLITPHLGSYTDEAVKNMVEV 312
>pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|B Chain B, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|C Chain C, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|D Chain D, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|E Chain E, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|F Chain F, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|G Chain G, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
pdb|2OME|H Chain H, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed
With Nad(H)
Length = 336
Score = 47.8 bits (112), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 8 SLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFD-PNDPILKFQSVLITPHVGG 66
+ LVN RGGL+D +A+A L+ G + G LDV +EPF P+ +++ TPH
Sbjct: 237 AFLVNAARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFAQGPLKDAPNLICTPHTAW 296
Query: 67 VTEHS 71
+E +
Sbjct: 297 YSEQA 301
>pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form
Length = 347
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 8 SLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFD-PNDPILKFQSVLITPHVGG 66
+ LVN RGGL+D +A+A L+ G + G LDV +EPF P+ +++ TPH
Sbjct: 253 AFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAW 312
Query: 67 VTEHS 71
+E +
Sbjct: 313 YSEQA 317
>pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H)
Binding And Dimerization
Length = 358
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 8 SLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFD-PNDPILKFQSVLITPHVGG 66
+ LVN RGGL+D +A+A L+ G + G LDV +EPF P+ +++ TPH
Sbjct: 256 AFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAW 315
Query: 67 VTEHS 71
+E +
Sbjct: 316 YSEQA 320
>pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK
PEPTIDE
pdb|2HU2|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND RRTGAPPAL
Peptide
Length = 358
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 8 SLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFD-PNDPILKFQSVLITPHVGG 66
+ LVN RGGL+D +A+A L+ G + G LDV +EPF P+ +++ TPH
Sbjct: 256 AFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAW 315
Query: 67 VTEHS 71
+E +
Sbjct: 316 YSEQA 320
>pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In
Transcription Corepression And Golgi Membrane Fission
Length = 358
Score = 47.0 bits (110), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 8 SLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFD-PNDPILKFQSVLITPHVGG 66
+ LVN RGGL+D +A+A L+ G + G LDV +EPF P+ +++ TPH
Sbjct: 256 AFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAW 315
Query: 67 VTEHS 71
+E +
Sbjct: 316 YSEQA 320
>pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|B Chain B, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|C Chain C, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
pdb|2GUG|D Chain D, Nad-dependent Formate Dehydrogenase From Pseudomonas
Sp.101 In Complex With Formate
Length = 401
Score = 45.8 bits (107), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 39/85 (45%)
Query: 8 SLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGGV 67
+ +VN RG L D +AVA LESG L G DV + +P + P +TPH+ G
Sbjct: 278 AYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGT 337
Query: 68 TEHSYRSTAKVVGDVALQLHAGTPL 92
T + A ++ G P+
Sbjct: 338 TLTAQARYAAGTREILEXFFEGRPI 362
>pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas
Sp.101
Length = 401
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 32/61 (52%)
Query: 8 SLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGGV 67
+ +VN RG L D +AVA LESG L G DV + +P + P +TPH+ G
Sbjct: 278 AYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGT 337
Query: 68 T 68
T
Sbjct: 338 T 338
>pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAC|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|A Chain A, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
pdb|2NAD|B Chain B, High Resolution Structures Of Holo And Apo Formate
Dehydrogenase
Length = 393
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 32/61 (52%)
Query: 8 SLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGGV 67
+ +VN RG L D +AVA LESG L G DV + +P + P +TPH+ G
Sbjct: 277 AYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGT 336
Query: 68 T 68
T
Sbjct: 337 T 337
>pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
pdb|2G76|B Chain B, Crystal Structure Of Human 3-Phosphoglycerate
Dehydrogenase
Length = 335
Score = 45.4 bits (106), Expect = 8e-06, Method: Composition-based stats.
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 10 LVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPND-PILKFQSVLITPHVGGVT 68
+VN RGG++D A+ L+SG G LDV EP P D ++ ++V+ PH+G T
Sbjct: 251 VVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP--PRDRALVDHENVISCPHLGAST 308
Query: 69 EHSYRSTAKVVGDVALQLHAGTPLTGI 95
+ + + + + + G LTG+
Sbjct: 309 KEAQSRCGEEIAVQFVDMVKGKSLTGV 335
>pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From
Lactobacillus Plantarum
Length = 324
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 9 LLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGGVT 68
+L+NI RG +D A+ L+ L LDV EP + P+ + VLITPH+ G
Sbjct: 222 MLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPHISGQI 281
Query: 69 EHSYRST 75
H +R+T
Sbjct: 282 AH-FRAT 287
>pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|B Chain B, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|C Chain C, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|D Chain D, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|E Chain E, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|F Chain F, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|G Chain G, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|H Chain H, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|I Chain I, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|J Chain J, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|K Chain K, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3N7U|L Chain L, Nad-Dependent Formate Dehydrogenase From Higher-Plant
Arabid Thaliana In Complex With Nad And Azide
pdb|3JTM|A Chain A, Structure Of Recombinant Formate Dehydrogenase From
Arabidopsis Thaliana
Length = 351
Score = 43.9 bits (102), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 33/60 (55%)
Query: 9 LLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGGVT 68
L+VN RG +++ +AV +ESGH+GG DV +P + P + +TPH G T
Sbjct: 251 LIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTT 310
>pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
pdb|3NAQ|B Chain B, Apo-Form Of Nad-Dependent Formate Dehydrogenase From
Higher-Plant Arabidopsis Thaliana
Length = 357
Score = 43.9 bits (102), Expect = 2e-05, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 33/60 (55%)
Query: 9 LLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGGVT 68
L+VN RG +++ +AV +ESGH+GG DV +P + P + +TPH G T
Sbjct: 257 LIVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTT 316
>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blu
pdb|3BAZ|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus
Blumei In Complex With Nadp+
Length = 333
Score = 42.7 bits (99), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 48/86 (55%), Gaps = 5/86 (5%)
Query: 9 LLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGGVT 68
+L+NI RG +D + L G LGG GLDV EP P + + ++V++ PHVG T
Sbjct: 246 VLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREPEVP-EKLFGLENVVLLPHVGSGT 304
Query: 69 EHSYRSTAK-VVGDVALQLH-AGTPL 92
+ + A VVG+ L+ H +G PL
Sbjct: 305 VETRKVMADLVVGN--LEAHFSGKPL 328
>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|B Chain B, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|C Chain C, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|D Chain D, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
Length = 345
Score = 42.7 bits (99), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 1 MSDVCTSSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEP-FDPNDPILKFQSVL 59
++ + ++++NI RG L++ +A+ L S HL GLDV EP DP ++
Sbjct: 250 IAKIPEGAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEPAIDPR--YRSLDNIF 307
Query: 60 ITPHVGGVTEHS 71
+TPH+G T +
Sbjct: 308 LTPHIGSATHET 319
>pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From
Bacterium Moraxella Sp.c-1 In Closed Conformation
Length = 401
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%)
Query: 8 SLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGGV 67
+ LVN RG L D +A+ LESG L G DV + +P + P +TPH+ G
Sbjct: 277 AYLVNTARGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRTMPHNGMTPHISGT 336
Query: 68 T 68
+
Sbjct: 337 S 337
>pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|B Chain B, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|C Chain C, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|D Chain D, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|E Chain E, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
pdb|4E5P|F Chain F, Thermostable Phosphite Dehydrogenase A176r Variant In
Complex With Nad
Length = 332
Score = 42.4 bits (98), Expect = 6e-05, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 41/99 (41%), Gaps = 12/99 (12%)
Query: 8 SLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDV----AWTEPFDPN--DP-ILKFQSVLI 60
+LLVN RG ++D AV LE G LGG DV W P DP +L + L
Sbjct: 230 ALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLF 289
Query: 61 TPHVGGVTEHSYRSTAKVVGDVALQLHAGTPLTGIEPVN 99
TPH+G + LQ L G P+N
Sbjct: 290 TPHIGSAVRAVRLEIERCAAQNILQ-----ALAGERPIN 323
>pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium
Moraxella Sp.c2 In Complex With Nad And Azide
Length = 402
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 31/61 (50%)
Query: 8 SLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGGV 67
+ LVN RG L D +A+ LESG L G DV + +P + P +TPH+ G
Sbjct: 278 AYLVNTARGKLCDRDAIVRALESGRLAGYAGDVWFPQPAPNDHPWRTMPHNGMTPHISGT 337
Query: 68 T 68
+
Sbjct: 338 S 338
>pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|E Chain E, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|F Chain F, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|G Chain G, Thermostable Phosphite Dehydrogenase In Complex With Nad
pdb|4E5N|H Chain H, Thermostable Phosphite Dehydrogenase In Complex With Nad
Length = 330
Score = 42.4 bits (98), Expect = 7e-05, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 41/99 (41%), Gaps = 12/99 (12%)
Query: 8 SLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDV----AWTEPFDPN--DP-ILKFQSVLI 60
+LLVN RG ++D AV LE G LGG DV W P DP +L + L
Sbjct: 230 ALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLF 289
Query: 61 TPHVGGVTEHSYRSTAKVVGDVALQLHAGTPLTGIEPVN 99
TPH+G + LQ L G P+N
Sbjct: 290 TPHIGSAVRAVRLEIERCAAQNILQ-----ALAGERPIN 323
>pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
pdb|4E5M|B Chain B, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX
WITH NADP
Length = 329
Score = 42.0 bits (97), Expect = 8e-05, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 41/99 (41%), Gaps = 12/99 (12%)
Query: 8 SLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDV----AWTEPFDPN--DP-ILKFQSVLI 60
+LLVN RG ++D AV LE G LGG DV W P DP +L + L
Sbjct: 230 ALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLF 289
Query: 61 TPHVGGVTEHSYRSTAKVVGDVALQLHAGTPLTGIEPVN 99
TPH+G + LQ L G P+N
Sbjct: 290 TPHIGSAVRAVRLEIERCAAQNILQ-----ALAGERPIN 323
>pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|B Chain B, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|C Chain C, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
pdb|4E5K|D Chain D, Thermostable Phosphite Dehydrogenase In Complex With Nad
And Sulfite
Length = 329
Score = 42.0 bits (97), Expect = 8e-05, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 41/99 (41%), Gaps = 12/99 (12%)
Query: 8 SLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDV----AWTEPFDPN--DP-ILKFQSVLI 60
+LLVN RG ++D AV LE G LGG DV W P DP +L + L
Sbjct: 230 ALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLF 289
Query: 61 TPHVGGVTEHSYRSTAKVVGDVALQLHAGTPLTGIEPVN 99
TPH+G + LQ L G P+N
Sbjct: 290 TPHIGSAVRAVRLEIERCAAQNILQ-----ALAGERPIN 323
>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
pdb|1GDH|B Chain B, Crystal Structure Of A Nad-Dependent D-Glycerate
Dehydrogenase At 2.4 Angstroms Resolution
Length = 320
Score = 42.0 bits (97), Expect = 9e-05, Method: Composition-based stats.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 1/86 (1%)
Query: 8 SLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGGV 67
+++VN RG L+D E V LE+G L G DV EP + N+ + + PH+G
Sbjct: 232 AIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEP-NINEGYYDLPNTFLFPHIGSA 290
Query: 68 TEHSYRSTAKVVGDVALQLHAGTPLT 93
+ A D+ L G ++
Sbjct: 291 ATQAREDMAHQANDLIDALFGGADMS 316
>pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|B Chain B, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|C Chain C, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|D Chain D, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|E Chain E, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
pdb|4EBF|F Chain F, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala
Mutant
Length = 334
Score = 42.0 bits (97), Expect = 9e-05, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 41/99 (41%), Gaps = 12/99 (12%)
Query: 8 SLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDV----AWTEPFDPN--DP-ILKFQSVLI 60
+LLVN RG ++D AV LE G LGG DV W P DP +L + L
Sbjct: 231 ALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEXEDWARADRPQQIDPALLAHPNTLF 290
Query: 61 TPHVGGVTEHSYRSTAKVVGDVALQLHAGTPLTGIEPVN 99
TPH+G + LQ L G P+N
Sbjct: 291 TPHIGSAVRAVRLEIERCAAQNILQ-----ALAGERPIN 324
>pdb|3KBO|A Chain A, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|B Chain B, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|C Chain C, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3KBO|D Chain D, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase
(ycdw) From Salmonella Typhimurium In Complex With Nadp
pdb|3PP8|A Chain A, 2.1 Angstrom Crystal Structure Of Putative Oxidoreductase
(Ycdw) From Salmonella Typhimurium
Length = 315
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Query: 8 SLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGGV 67
+ ++N+ RG + + L+SG L G LDV EP P+ + V TPH+ V
Sbjct: 223 AYVLNLARGVHVQEADLLAALDSGKLKGAXLDVFSQEPLPQESPLWRHPRVAXTPHIAAV 282
Query: 68 TEHSYRSTAKVVGDVALQLHAGTPLTG 94
T + + QL G P+TG
Sbjct: 283 TRPA--EAIDYISRTITQLEKGEPVTG 307
>pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|B Chain B, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|C Chain C, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
pdb|3GG9|D Chain D, Crystal Structure Of Putative D-3-Phosphoglycerate
Dehydrogenase Oxidoreductase From Ralstonia Solanacearum
Length = 352
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 33/66 (50%)
Query: 7 SSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGG 66
++L VN R L++ + L G G +DV TEP +L+ ++ + TPH+G
Sbjct: 244 TALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPHIGY 303
Query: 67 VTEHSY 72
V SY
Sbjct: 304 VERESY 309
>pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate
Dehydrogenase Complexed With Nad
pdb|2O4C|B Chain B, Crystal Structure Of D-erythronate-4-phosphate
Dehydrogenase Complexed With Nad
Length = 380
Score = 40.8 bits (94), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 8 SLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGGV 67
+ LVN RG ++D +A+ LE G + LDV EP DP L + ++ TPH+ G
Sbjct: 201 TWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGEP--QADPELAARCLIATPHIAGY 258
Query: 68 T-EHSYRSTAKV 78
+ E R TA++
Sbjct: 259 SLEGKLRGTAQI 270
>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|B Chain B, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|C Chain C, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
pdb|2D0I|D Chain D, Crystal Structure Ph0520 Protein From Pyrococcus
Horikoshii Ot3
Length = 333
Score = 39.7 bits (91), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 10 LVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQ-SVLITPHVGGV 67
LVNI RG L+D +AV ++ G L G DV EP ++ + K++ ++TPH G+
Sbjct: 231 LVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHE-LFKYEWETVLTPHYAGL 288
>pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ4|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus
pdb|2YQ5|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|B Chain B, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|C Chain C, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
pdb|2YQ5|D Chain D, Crystal Structure Of D-isomer Specific 2-hydroxyacid
Dehydrogenase From Lactobacillus Delbrueckii Ssp.
Bulgaricus: Nad Complexed Form
Length = 343
Score = 39.3 bits (90), Expect = 5e-04, Method: Composition-based stats.
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 13/91 (14%)
Query: 1 MSDVCTSSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLD-----------VAWTEPFDPN 49
+ ++ S+ L+N RG L+D A+ L+ G + G GLD T+ P
Sbjct: 223 LKEMKKSAYLINCARGELVDTGALIKALQDGEIAGAGLDTLAGESSYFGHTGLTDSEIPE 282
Query: 50 D--PILKFQSVLITPHVGGVTEHSYRSTAKV 78
D + K +V+ITPH TE S R+ ++
Sbjct: 283 DYKTLAKMPNVVITPHSAFYTETSIRNMVQI 313
>pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a
Length = 348
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 6/88 (6%)
Query: 8 SLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPN--DPILKFQSVLITPHVG 65
S +VN RG ++ +A+ L+SG L GLDV F+PN +++ + V +T H+G
Sbjct: 250 SRIVNTARGPVISQDALIAALKSGKLLSAGLDV---HEFEPNVSKELIEMKHVTLTTHIG 306
Query: 66 GVTEHSYRSTAKV-VGDVALQLHAGTPL 92
GV ++ ++ + ++ L G PL
Sbjct: 307 GVAIETFHEFERLTMTNIDRFLLQGKPL 334
>pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium
Meliloti
Length = 340
Score = 38.9 bits (89), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 9 LLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGGVT 68
++VN+ RG ++D +A+ L+SG + G GLDV EP ++ +VL PH G T
Sbjct: 253 IVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEPAIRSEFHTTPNTVL-XPHQGSAT 311
Query: 69 EHSYRSTAKVV 79
+ + K+V
Sbjct: 312 VETRXAXGKLV 322
>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii
Length = 313
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 6/74 (8%)
Query: 9 LLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPND----PILKFQSVLITPHV 64
++VN R ++ +A+ Y++ G + DV W EP P + +LK + V++T H+
Sbjct: 227 IIVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEP--PKEEWELELLKHERVIVTTHI 284
Query: 65 GGVTEHSYRSTAKV 78
G T+ + + A++
Sbjct: 285 GAQTKEAQKRVAEM 298
>pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis
D-Mandelate Dehydrogenase At 1.8a.
pdb|2W2L|A Chain A, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|B Chain B, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a.
pdb|2W2L|C Chain C, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 8 SLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGGV 67
S +VN RG ++ +A+ L+SG L GLDV EP + +++ + V +T H+GGV
Sbjct: 250 SRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEP-QVSKELIEMKHVTLTTHIGGV 308
Query: 68 TEHSYRSTAKV-VGDVALQLHAGTPL 92
++ ++ + ++ L G PL
Sbjct: 309 AIETFHEFERLTMTNIDRFLLQGKPL 334
>pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula
Graminis D-Mandelate Dehydrogenase At 2.5a
Length = 348
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 8 SLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGGV 67
S +VN RG ++ +A+ L+SG L GLDV EP + +++ + V +T H+GGV
Sbjct: 250 SRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEP-QVSKELIEMKHVTLTTHIGGV 308
Query: 68 TEHSYRSTAKV-VGDVALQLHAGTPL 92
++ ++ + ++ L G PL
Sbjct: 309 AIETFHEFERLTMTNIDRFLLQGKPL 334
>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|B Chain B, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|C Chain C, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
pdb|3KB6|D Chain D, Crystal Structure Of D-lactate Dehydrogenase From Aquifex
Aeolicus Complexed With Nad And Lactic Acid
Length = 334
Score = 37.7 bits (86), Expect = 0.002, Method: Composition-based stats.
Identities = 30/89 (33%), Positives = 42/89 (47%), Gaps = 19/89 (21%)
Query: 10 LVNIVRGGLLDYEAVAHYLESGHLGGLGLDV----------AWTE--PFDPNDPILKF-- 55
L+N RG ++D +A+ + G GLGLDV +TE D N IL+
Sbjct: 226 LINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELAC 285
Query: 56 -QSVLITPHVGGVTEHSY----RSTAKVV 79
+V+ITPH+ T+ S T KVV
Sbjct: 286 KDNVIITPHIAYYTDKSLERIREETVKVV 314
>pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J49|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 13/94 (13%)
Query: 9 LLVNIVRGGLLDYEAVAHYLESGHLGGLGLDV----------AWTEPFDPN---DPILKF 55
++VN+ RG L+D +AV L+SG + G +DV W P+ ++
Sbjct: 230 VIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIAR 289
Query: 56 QSVLITPHVGGVTEHSYRSTAKVVGDVALQLHAG 89
+VL+TPH T H+ R+ D L+L G
Sbjct: 290 PNVLVTPHTAFYTTHAVRNMVVKAFDNNLELVEG 323
>pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
pdb|2FSS|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant
Length = 365
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 10 LVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVL-----ITPHV 64
LVN RG + E VA LESG L G G DV + +P + P ++ +TPH
Sbjct: 254 LVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHY 313
Query: 65 GGVT 68
G T
Sbjct: 314 SGTT 317
>pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|B Chain B, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|C Chain C, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
pdb|2J6I|D Chain D, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal
Mutant
Length = 364
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 10 LVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVL-----ITPHV 64
LVN RG + E VA LESG L G G DV + +P + P ++ +TPH
Sbjct: 253 LVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHY 312
Query: 65 GGVT 68
G T
Sbjct: 313 SGTT 316
>pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|B Chain B, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|C Chain C, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
pdb|1J4A|D Chain D, Insights Into Domain Closure, Substrate Specificity And
Catalysis Of D-Lactate Dehydrogenase From Lactobacillus
Bulgaricus
Length = 333
Score = 34.3 bits (77), Expect = 0.020, Method: Composition-based stats.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 13/94 (13%)
Query: 9 LLVNIVRGGLLDYEAVAHYLESGHLGGLGLDV----------AWTEPFDPN---DPILKF 55
++VN+ RG L+D +AV L+SG + G +DV W P+ ++
Sbjct: 230 VIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIAR 289
Query: 56 QSVLITPHVGGVTEHSYRSTAKVVGDVALQLHAG 89
+VL+TP T H+ R+ D L+L G
Sbjct: 290 PNVLVTPKTAFYTTHAVRNMVVKAFDNNLELVEG 323
>pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase
Length = 333
Score = 33.9 bits (76), Expect = 0.021, Method: Composition-based stats.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 13/75 (17%)
Query: 8 SLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDP---------NDP----ILK 54
++++N R L+D +A+ L+SG L G+G+D E D DP +L
Sbjct: 227 AIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLG 286
Query: 55 FQSVLITPHVGGVTE 69
+V+++PH+ TE
Sbjct: 287 MPNVVLSPHIAYYTE 301
>pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid
Dehydrogenase Family Protein From Aeromonas Salmonicida
Subsp. Salmonicida A449
Length = 324
Score = 33.9 bits (76), Expect = 0.022, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 8 SLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPH 63
++L N+ RG ++ + L +G LG LDV EP + P+ +++ITPH
Sbjct: 224 AILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPH 279
>pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
pdb|2DLD|B Chain B, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate
Length = 337
Score = 33.1 bits (74), Expect = 0.041, Method: Composition-based stats.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 13/79 (16%)
Query: 9 LLVNIVRGGLLDYEAVAHYLESGHLGGLGLDV----------AWTEPFDPND---PILKF 55
++VN RG L+D +AV L+SG + G +D W P+ ++
Sbjct: 230 VIVNCSRGRLVDTDAVIRGLDSGKIFGFVMDTYEDEVGVFNKDWEGKEFPDKRLADLIDR 289
Query: 56 QSVLITPHVGGVTEHSYRS 74
+VL+TPH T H+ R+
Sbjct: 290 PNVLVTPHTAFYTTHAVRN 308
>pdb|1KCF|A Chain A, Crystal Structure Of The Yeast Mitochondrial Holliday
Junction Resolvase, Ydc2
pdb|1KCF|B Chain B, Crystal Structure Of The Yeast Mitochondrial Holliday
Junction Resolvase, Ydc2
Length = 258
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 37 GLDVAWTEPFDPN---DPILKFQSVL---ITPHVGGVTEHSYRSTAKVVGDVALQLH 87
GLD+ WTE F P+ D ++ + L PHV + YRS + + L+++
Sbjct: 80 GLDIQWTEDFQPSSMADLSIQLFNTLHEKFNPHVILMERQRYRSGIATIPEWTLRVN 136
>pdb|1WF5|A Chain A, Solution Structure Of The First Fn3 Domain Of Sidekick-2
Protein
Length = 121
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 7/19 (36%), Positives = 15/19 (78%)
Query: 37 GLDVAWTEPFDPNDPILKF 55
+++ WT+PFD N P++++
Sbjct: 35 AINLTWTKPFDGNSPLIRY 53
>pdb|2ID2|A Chain A, Gapn T244s Mutant X-Ray Structure At 2.5 A
pdb|2ID2|B Chain B, Gapn T244s Mutant X-Ray Structure At 2.5 A
pdb|2ID2|C Chain C, Gapn T244s Mutant X-Ray Structure At 2.5 A
pdb|2ID2|D Chain D, Gapn T244s Mutant X-Ray Structure At 2.5 A
Length = 475
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 38 LDVAWTEPFDPNDPILKFQSVLITPHVGGVTEHSYRST------AKVVGDVALQLHAGT 90
+ +AW EPF P PI++ SV + +E+ +++ + G +A QL GT
Sbjct: 371 MRLAWEEPFGPVLPIIRVTSVEEAIEISNKSEYGLQASIFTNDFPRAFG-IAEQLEVGT 428
>pdb|1EUH|A Chain A, Apo Form Of A Nadp Dependent Aldehyde Dehydrogenase From
Streptococcus Mutans
pdb|1EUH|B Chain B, Apo Form Of A Nadp Dependent Aldehyde Dehydrogenase From
Streptococcus Mutans
pdb|1EUH|C Chain C, Apo Form Of A Nadp Dependent Aldehyde Dehydrogenase From
Streptococcus Mutans
pdb|1EUH|D Chain D, Apo Form Of A Nadp Dependent Aldehyde Dehydrogenase From
Streptococcus Mutans
pdb|2EUH|A Chain A, Holo Form Of A Nadp Dependent Aldehyde Dehydrogenase
Complex With Nadp+
pdb|2EUH|B Chain B, Holo Form Of A Nadp Dependent Aldehyde Dehydrogenase
Complex With Nadp+
pdb|2EUH|C Chain C, Holo Form Of A Nadp Dependent Aldehyde Dehydrogenase
Complex With Nadp+
pdb|2EUH|D Chain D, Holo Form Of A Nadp Dependent Aldehyde Dehydrogenase
Complex With Nadp+
pdb|1QI6|A Chain A, Second Apo Form Of An Nadp Dependent Aldehyde
Dehydrogenase With Glu250 Situated 3.7 A From Cys284
pdb|1QI6|B Chain B, Second Apo Form Of An Nadp Dependent Aldehyde
Dehydrogenase With Glu250 Situated 3.7 A From Cys284
pdb|1QI6|C Chain C, Second Apo Form Of An Nadp Dependent Aldehyde
Dehydrogenase With Glu250 Situated 3.7 A From Cys284
pdb|1QI6|D Chain D, Second Apo Form Of An Nadp Dependent Aldehyde
Dehydrogenase With Glu250 Situated 3.7 A From Cys284
Length = 475
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 38 LDVAWTEPFDPNDPILKFQSVLITPHVGGVTEHSYRST------AKVVGDVALQLHAGT 90
+ +AW EPF P PI++ SV + +E+ +++ + G +A QL GT
Sbjct: 371 MRLAWEEPFGPVLPIIRVTSVEEAIEISNKSEYGLQASIFTNDFPRAFG-IAEQLEVGT 428
>pdb|2ESD|A Chain A, Crystal Structure Of Thioacylenzyme Intermediate Of An
Nadp Dependent Aldehyde Dehydrogenase
pdb|2ESD|B Chain B, Crystal Structure Of Thioacylenzyme Intermediate Of An
Nadp Dependent Aldehyde Dehydrogenase
pdb|2ESD|C Chain C, Crystal Structure Of Thioacylenzyme Intermediate Of An
Nadp Dependent Aldehyde Dehydrogenase
pdb|2ESD|D Chain D, Crystal Structure Of Thioacylenzyme Intermediate Of An
Nadp Dependent Aldehyde Dehydrogenase
pdb|2QE0|A Chain A, Thioacylenzyme Intermediate Of Gapn From S. Mutans, New
Data Integration And Refinement.
pdb|2QE0|B Chain B, Thioacylenzyme Intermediate Of Gapn From S. Mutans, New
Data Integration And Refinement.
pdb|2QE0|C Chain C, Thioacylenzyme Intermediate Of Gapn From S. Mutans, New
Data Integration And Refinement.
pdb|2QE0|D Chain D, Thioacylenzyme Intermediate Of Gapn From S. Mutans, New
Data Integration And Refinement
Length = 475
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 38 LDVAWTEPFDPNDPILKFQSVLITPHVGGVTEHSYRST------AKVVGDVALQLHAGT 90
+ +AW EPF P PI++ SV + +E+ +++ + G +A QL GT
Sbjct: 371 MRLAWEEPFGPVLPIIRVTSVEEAIEISNKSEYGLQASIFTNDFPRAFG-IAEQLEVGT 428
>pdb|1QI1|A Chain A, Ternary Complex Of An Nadp Dependent Aldehyde
Dehydrogenase
pdb|1QI1|B Chain B, Ternary Complex Of An Nadp Dependent Aldehyde
Dehydrogenase
pdb|1QI1|C Chain C, Ternary Complex Of An Nadp Dependent Aldehyde
Dehydrogenase
pdb|1QI1|D Chain D, Ternary Complex Of An Nadp Dependent Aldehyde
Dehydrogenase
Length = 475
Score = 27.7 bits (60), Expect = 1.8, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 38 LDVAWTEPFDPNDPILKFQSVLITPHVGGVTEHSYRST------AKVVGDVALQLHAGT 90
+ +AW EPF P PI++ SV + +E+ +++ + G +A QL GT
Sbjct: 371 MRLAWEEPFGPVLPIIRVTSVEEAIEISNKSEYGLQASIFTNDFPRAFG-IAEQLEVGT 428
>pdb|2XSN|A Chain A, Crystal Structure Of Human Tyrosine Hydroxylase
Catalytic Domain
pdb|2XSN|B Chain B, Crystal Structure Of Human Tyrosine Hydroxylase
Catalytic Domain
pdb|2XSN|C Chain C, Crystal Structure Of Human Tyrosine Hydroxylase
Catalytic Domain
pdb|2XSN|D Chain D, Crystal Structure Of Human Tyrosine Hydroxylase
Catalytic Domain
Length = 343
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 66 GVTEHSYRSTAKVVGDVALQLHAGTPLTGIE 96
G ++ YR K++ ++A Q G P+ +E
Sbjct: 32 GFSDQVYRQRRKLIAEIAFQYRHGDPIPRVE 62
>pdb|1TOH|A Chain A, Tyrosine Hydroxylase Catalytic And Tetramerization
Domains From Rat
Length = 343
Score = 26.6 bits (57), Expect = 4.2, Method: Composition-based stats.
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 52 ILKFQSVLITPHVGGVTEHSYRSTAKVVGDVALQLHAGTPLTGIE 96
+ KF L H G ++ YR K++ ++A Q G P+ +E
Sbjct: 26 VTKFDPDLDLDH-PGFSDQVYRQRRKLIAEIAFQYKHGEPIPHVE 69
>pdb|2TOH|A Chain A, Tyrosine Hydroxylase Catalytic And Tetramerization
Domains From Rat
Length = 343
Score = 26.2 bits (56), Expect = 4.4, Method: Composition-based stats.
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 66 GVTEHSYRSTAKVVGDVALQLHAGTPLTGIE 96
G ++ YR K++ ++A Q G P+ +E
Sbjct: 39 GFSDQVYRQRRKLIAEIAFQYKHGEPIPHVE 69
>pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|B Chain B, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|C Chain C, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|D Chain D, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|E Chain E, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|F Chain F, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|G Chain G, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
pdb|3OET|H Chain H, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad
Length = 381
Score = 26.2 bits (56), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 5/73 (6%)
Query: 8 SLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLI-TPHVGG 66
++L+N RG ++D A+ L +G + LDV EP D N +L ++V I T H+ G
Sbjct: 204 AILINACRGPVVDNAALLARLNAGQPLSVVLDVWEGEP-DLNVALL--EAVDIGTSHIAG 260
Query: 67 VT-EHSYRSTAKV 78
T E R T +V
Sbjct: 261 YTLEGKARGTTQV 273
>pdb|1D4X|A Chain A, Crystal Structure Of Caenorhabditis Elegans Mg-Atp Actin
Complexed With Human Gelsolin Segment 1 At 1.75 A
Resolution
Length = 375
Score = 25.8 bits (55), Expect = 6.4, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 51 PILKFQSVLITPHVGGVTEHSYRSTAKVVGDVALQLHAGTPLTG 94
P FQ + G+ E SY S K D+ L+A T L+G
Sbjct: 258 PEAMFQPSFLGMESAGIHETSYNSIMKCDIDIRKDLYANTVLSG 301
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.138 0.416
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,159,497
Number of Sequences: 62578
Number of extensions: 119323
Number of successful extensions: 487
Number of sequences better than 100.0: 89
Number of HSP's better than 100.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 400
Number of HSP's gapped (non-prelim): 90
length of query: 99
length of database: 14,973,337
effective HSP length: 65
effective length of query: 34
effective length of database: 10,905,767
effective search space: 370796078
effective search space used: 370796078
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)