Query 045269
Match_columns 99
No_of_seqs 161 out of 1133
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 11:33:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045269.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045269hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0111 SerA Phosphoglycerate 100.0 5.8E-37 1.3E-41 227.2 10.4 94 1-94 220-313 (324)
2 PLN02928 oxidoreductase family 100.0 9.1E-37 2E-41 227.8 10.9 99 1-99 249-347 (347)
3 PRK15409 bifunctional glyoxyla 100.0 4.9E-36 1.1E-40 222.1 10.7 96 1-96 223-318 (323)
4 PRK06487 glycerate dehydrogena 100.0 3.4E-35 7.3E-40 217.0 10.8 93 1-93 220-314 (317)
5 PRK07574 formate dehydrogenase 100.0 7.8E-35 1.7E-39 219.9 10.4 97 1-97 271-367 (385)
6 PLN03139 formate dehydrogenase 100.0 8.5E-35 1.8E-39 219.7 10.4 98 1-98 278-375 (386)
7 PRK06932 glycerate dehydrogena 100.0 1.3E-34 2.8E-39 213.7 10.2 91 1-91 220-314 (314)
8 PRK08410 2-hydroxyacid dehydro 100.0 3.5E-34 7.5E-39 211.2 10.1 89 1-90 219-310 (311)
9 PRK13243 glyoxylate reductase; 100.0 5.1E-34 1.1E-38 211.9 10.1 95 1-96 227-321 (333)
10 PLN02306 hydroxypyruvate reduc 100.0 8.3E-34 1.8E-38 214.4 10.4 95 1-96 259-353 (386)
11 PRK15469 ghrA bifunctional gly 100.0 7.8E-34 1.7E-38 209.5 9.9 94 1-96 213-306 (312)
12 PRK11790 D-3-phosphoglycerate 100.0 6.3E-33 1.4E-37 210.8 10.5 96 1-96 226-325 (409)
13 COG1052 LdhA Lactate dehydroge 100.0 6.2E-33 1.4E-37 205.7 9.9 97 1-97 223-322 (324)
14 TIGR01327 PGDH D-3-phosphoglyc 100.0 2.8E-32 6.2E-37 212.4 10.3 95 1-96 216-310 (525)
15 PRK13581 D-3-phosphoglycerate 100.0 2.7E-32 5.9E-37 212.5 10.1 95 1-96 217-311 (526)
16 PRK12480 D-lactate dehydrogena 100.0 3.6E-32 7.8E-37 201.9 9.2 96 1-96 221-329 (330)
17 PRK08605 D-lactate dehydrogena 100.0 3E-30 6.4E-35 191.6 10.4 96 1-96 223-331 (332)
18 KOG0068 D-3-phosphoglycerate d 100.0 3.1E-30 6.7E-35 190.9 7.6 90 1-90 223-314 (406)
19 PRK06436 glycerate dehydrogena 100.0 2E-29 4.3E-34 185.6 10.6 91 1-95 196-287 (303)
20 KOG0069 Glyoxylate/hydroxypyru 100.0 1.4E-29 3E-34 188.0 8.7 96 1-97 240-335 (336)
21 PRK00257 erythronate-4-phospha 100.0 2.9E-29 6.3E-34 189.4 10.5 90 1-92 194-283 (381)
22 PRK15438 erythronate-4-phospha 100.0 5.1E-29 1.1E-33 187.9 10.1 86 1-88 194-279 (378)
23 PF02826 2-Hacid_dh_C: D-isome 100.0 9.2E-30 2E-34 174.4 4.7 65 1-65 114-178 (178)
24 KOG0067 Transcription factor C 99.4 8.6E-13 1.9E-17 99.4 5.1 86 2-94 257-343 (435)
25 PLN02494 adenosylhomocysteinas 97.8 9.3E-06 2E-10 63.5 1.5 44 1-45 328-374 (477)
26 PTZ00075 Adenosylhomocysteinas 97.7 3.9E-05 8.4E-10 60.1 3.9 40 1-47 328-367 (476)
27 TIGR00936 ahcY adenosylhomocys 97.6 4.8E-05 1E-09 58.6 3.0 42 1-42 269-311 (406)
28 PF00389 2-Hacid_dh: D-isomer 96.7 0.0029 6.2E-08 40.9 4.2 31 66-96 102-132 (133)
29 PRK05476 S-adenosyl-L-homocyst 86.4 0.56 1.2E-05 36.6 2.3 26 1-26 286-312 (425)
30 PF03279 Lip_A_acyltrans: Bact 86.4 3.8 8.2E-05 29.7 6.6 83 6-92 170-284 (295)
31 PF04577 DUF563: Protein of un 83.1 1.6 3.4E-05 29.5 3.1 60 6-70 103-167 (206)
32 PRK09344 phosphoenolpyruvate c 82.1 3.5 7.5E-05 33.2 5.1 78 6-86 417-511 (526)
33 cd00401 AdoHcyase S-adenosyl-L 80.8 1.4 3.1E-05 34.2 2.5 26 1-26 276-302 (413)
34 PF06345 Drf_DAD: DRF Autoregu 80.6 1.9 4E-05 17.8 1.7 12 21-32 3-14 (15)
35 KOG4022 Dihydropteridine reduc 79.0 20 0.00043 25.3 7.8 79 4-98 1-79 (236)
36 cd00484 PEPCK_ATP Phosphoenolp 78.8 5.7 0.00012 31.9 5.3 80 5-87 401-497 (508)
37 TIGR00224 pckA phosphoenolpyru 76.0 6.7 0.00015 31.6 4.9 81 5-88 425-518 (532)
38 TIGR01505 tartro_sem_red 2-hyd 74.6 4.5 9.7E-05 29.2 3.5 33 2-34 81-113 (291)
39 PRK11559 garR tartronate semia 71.8 5.6 0.00012 28.7 3.4 33 2-34 84-116 (296)
40 COG2306 Predicted RNA-binding 67.3 4.9 0.00011 27.9 2.2 23 12-34 116-138 (183)
41 cd08599 PI-PLCc_plant Catalyti 66.7 22 0.00048 25.6 5.5 35 9-44 11-54 (228)
42 cd08591 PI-PLCc_beta Catalytic 66.3 15 0.00032 27.0 4.6 35 9-44 11-54 (257)
43 PRK15461 NADH-dependent gamma- 64.2 11 0.00024 27.5 3.6 37 2-40 83-119 (296)
44 cd01075 NAD_bind_Leu_Phe_Val_D 63.2 2.7 6E-05 29.1 0.3 53 9-65 88-140 (200)
45 cd08593 PI-PLCc_delta Catalyti 60.9 19 0.00041 26.4 4.3 78 9-90 11-122 (257)
46 PF05222 AlaDh_PNT_N: Alanine 60.9 11 0.00024 24.7 2.8 41 1-43 79-119 (136)
47 PLN02597 phosphoenolpyruvate c 60.3 29 0.00063 28.2 5.6 78 5-86 438-533 (555)
48 cd08630 PI-PLCc_delta3 Catalyt 59.3 21 0.00046 26.2 4.4 35 9-44 11-54 (258)
49 PRK12490 6-phosphogluconate de 57.2 21 0.00045 26.0 4.1 37 2-40 82-118 (299)
50 PRK09424 pntA NAD(P) transhydr 56.2 31 0.00066 27.7 5.1 75 2-89 81-155 (509)
51 cd08624 PI-PLCc_beta2 Catalyti 55.8 80 0.0017 23.3 7.4 25 20-45 31-55 (261)
52 cd07027 RNAP_RPB11_like RPB11 55.0 45 0.00097 20.1 6.1 56 24-87 26-82 (83)
53 cd06927 RNAP_L L subunit of Ar 53.9 47 0.001 20.0 6.0 56 24-87 26-82 (83)
54 PRK01146 DNA-directed RNA poly 53.8 48 0.001 20.0 6.1 51 29-87 34-84 (85)
55 cd08625 PI-PLCc_beta3 Catalyti 53.7 87 0.0019 23.0 7.8 67 20-88 31-123 (258)
56 PF00670 AdoHcyase_NAD: S-aden 53.6 4 8.7E-05 27.9 -0.2 26 1-26 97-123 (162)
57 PTZ00311 phosphoenolpyruvate c 53.6 53 0.0012 26.9 6.0 79 5-86 448-544 (561)
58 COG1866 PckA Phosphoenolpyruva 52.0 53 0.0012 26.4 5.7 81 4-87 417-514 (529)
59 cd08629 PI-PLCc_delta1 Catalyt 51.6 33 0.00071 25.2 4.3 34 9-43 11-53 (258)
60 TIGR03035 trp_arylform arylfor 51.5 47 0.001 23.1 4.9 39 7-46 102-150 (206)
61 PF07433 DUF1513: Protein of u 50.4 6 0.00013 29.7 0.3 40 1-40 133-172 (305)
62 PLN02230 phosphoinositide phos 49.2 1.3E+02 0.0029 24.8 7.7 75 9-88 124-233 (598)
63 COG1761 RPB11 DNA-directed RNA 47.7 69 0.0015 20.1 5.7 51 30-88 39-89 (99)
64 COG0063 Predicted sugar kinase 47.6 34 0.00074 25.4 3.9 55 10-65 104-161 (284)
65 PRK08733 lipid A biosynthesis 45.8 76 0.0017 23.2 5.5 22 21-42 184-205 (306)
66 PRK09599 6-phosphogluconate de 44.1 41 0.00088 24.5 3.9 37 2-40 82-118 (301)
67 cd08589 PI-PLCc_SaPLC1_like Ca 43.9 74 0.0016 24.2 5.2 70 22-93 48-127 (324)
68 cd08594 PI-PLCc_eta Catalytic 43.2 55 0.0012 23.6 4.3 77 9-87 11-119 (227)
69 COG4778 PhnL ABC-type phosphon 41.8 12 0.00026 26.6 0.7 30 9-38 159-205 (235)
70 TIGR00561 pntA NAD(P) transhyd 41.6 34 0.00074 27.5 3.3 75 2-89 80-154 (511)
71 PRK05472 redox-sensing transcr 40.6 12 0.00026 26.0 0.6 27 4-30 175-201 (213)
72 PF01256 Carb_kinase: Carbohyd 40.0 6 0.00013 28.4 -1.0 57 7-65 69-125 (242)
73 PF15366 DUF4597: Domain of un 39.8 26 0.00055 19.9 1.7 17 49-65 16-32 (62)
74 cd01919 PEPCK Phosphoenolpyruv 39.7 65 0.0014 26.0 4.6 80 4-88 408-505 (515)
75 cd01318 DHOase_IIb Dihydroorot 39.4 28 0.00061 26.2 2.5 26 18-43 227-252 (361)
76 TIGR00143 hypF [NiFe] hydrogen 39.2 59 0.0013 27.2 4.4 36 55-90 380-415 (711)
77 cd08558 PI-PLCc_eukaryota Cata 38.2 55 0.0012 23.6 3.7 24 20-44 31-54 (226)
78 cd08626 PI-PLCc_beta4 Catalyti 37.9 55 0.0012 24.1 3.7 24 20-44 31-54 (257)
79 COG2084 MmsB 3-hydroxyisobutyr 37.3 53 0.0011 24.4 3.6 37 2-40 83-119 (286)
80 PLN02228 Phosphoinositide phos 36.6 80 0.0017 25.9 4.7 35 9-44 115-158 (567)
81 PF03991 Prion_octapep: Copper 36.5 19 0.00042 12.4 0.6 6 62-67 1-6 (8)
82 PRK04323 hypothetical protein; 36.4 49 0.0011 20.5 2.8 54 8-63 3-68 (91)
83 COG3490 Uncharacterized protei 35.1 27 0.00059 26.6 1.7 40 1-40 196-235 (366)
84 cd08595 PI-PLCc_zeta Catalytic 33.6 76 0.0017 23.3 3.8 81 9-91 11-123 (257)
85 PRK05646 lipid A biosynthesis 32.9 1.6E+02 0.0034 21.6 5.5 22 21-42 183-204 (310)
86 PF03480 SBP_bac_7: Bacterial 32.0 1.5E+02 0.0032 21.2 5.1 40 6-45 27-67 (286)
87 PRK00103 rRNA large subunit me 31.3 1.2E+02 0.0025 20.5 4.2 87 3-92 63-154 (157)
88 TIGR00246 tRNA_RlmH_YbeA rRNA 31.2 1.5E+02 0.0033 19.8 4.8 87 3-92 62-151 (153)
89 cd08623 PI-PLCc_beta1 Catalyti 31.0 2.2E+02 0.0047 21.0 7.2 24 20-44 31-54 (258)
90 TIGR02208 lipid_A_msbB lipid A 31.0 1.9E+02 0.0041 21.1 5.6 22 21-42 182-203 (305)
91 PRK10565 putative carbohydrate 30.4 51 0.0011 26.3 2.7 57 6-65 321-377 (508)
92 PRK15182 Vi polysaccharide bio 29.7 2.2E+02 0.0047 22.1 6.0 59 2-60 108-173 (425)
93 cd08631 PI-PLCc_delta4 Catalyt 29.5 88 0.0019 23.0 3.6 70 20-91 31-123 (258)
94 PF11950 DUF3467: Protein of u 29.0 43 0.00093 20.4 1.7 27 55-88 59-85 (92)
95 PRK06946 lipid A biosynthesis 28.8 2.1E+02 0.0046 20.7 5.6 22 21-42 170-191 (293)
96 PRK07369 dihydroorotase; Provi 28.8 49 0.0011 25.5 2.3 25 19-43 287-311 (418)
97 KOG0169 Phosphoinositide-speci 28.7 1.2E+02 0.0026 25.7 4.6 36 9-45 298-342 (746)
98 KOG2455 Delta-1-pyrroline-5-ca 28.5 83 0.0018 25.4 3.5 41 47-88 260-304 (561)
99 cd08557 PI-PLCc_bacteria_like 28.2 1.1E+02 0.0024 21.4 3.9 57 21-91 40-96 (271)
100 COG2236 Predicted phosphoribos 28.1 84 0.0018 22.0 3.2 66 9-77 32-108 (192)
101 cd07029 RNAP_I_III_AC19 AC19 s 27.8 1.4E+02 0.0031 17.9 6.3 51 29-87 32-82 (85)
102 COG1560 HtrB Lauroyl/myristoyl 27.8 2.5E+02 0.0054 21.1 5.8 70 21-90 184-285 (308)
103 PRK07920 lipid A biosynthesis 27.4 2.5E+02 0.0053 20.4 8.5 85 7-91 158-271 (298)
104 cd01817 RGS12_RBD Ubiquitin do 27.0 83 0.0018 18.7 2.6 39 4-43 6-45 (73)
105 PRK08905 lipid A biosynthesis 26.1 1.1E+02 0.0023 22.3 3.6 33 7-42 150-182 (289)
106 PLN02222 phosphoinositide phos 25.7 1.6E+02 0.0035 24.2 4.8 76 9-88 112-222 (581)
107 PRK07627 dihydroorotase; Provi 25.3 62 0.0013 25.0 2.3 25 19-43 286-310 (425)
108 PF04199 Cyclase: Putative cyc 25.2 86 0.0019 20.7 2.7 41 6-46 116-170 (171)
109 PRK08655 prephenate dehydrogen 24.7 3.1E+02 0.0068 21.3 6.1 56 3-64 81-137 (437)
110 TIGR00489 aEF-1_beta translati 24.5 1.4E+02 0.003 18.3 3.3 54 16-71 14-67 (88)
111 PRK15042 pduD propanediol dehy 24.3 2.8E+02 0.006 20.0 6.7 78 10-99 99-183 (219)
112 TIGR03439 methyl_EasF probable 23.7 1.5E+02 0.0032 22.3 4.0 40 3-42 73-114 (319)
113 KOG3086 Predicted dioxygenase 23.7 45 0.00097 24.8 1.2 14 56-70 40-53 (296)
114 PF03446 NAD_binding_2: NAD bi 23.6 75 0.0016 20.8 2.2 37 2-40 82-118 (163)
115 KOG0881 Cyclophilin type pepti 23.6 1.1E+02 0.0025 20.4 3.0 45 51-95 5-49 (164)
116 PF13263 PHP_C: PHP-associated 23.5 27 0.00058 19.1 0.0 16 17-32 40-55 (56)
117 COG4252 Predicted transmembran 23.4 1.4E+02 0.0031 23.3 4.0 39 23-61 87-130 (400)
118 PF06903 VirK: VirK protein; 23.4 1E+02 0.0022 19.4 2.6 28 18-45 3-30 (100)
119 cd06926 RNAP_II_RPB11 RPB11 su 23.2 1.9E+02 0.0041 17.7 5.9 40 49-88 52-91 (93)
120 TIGR02853 spore_dpaA dipicolin 23.0 43 0.00094 24.5 1.0 21 1-21 227-248 (287)
121 PRK08044 allantoinase; Provisi 23.0 79 0.0017 24.5 2.5 36 8-43 284-319 (449)
122 PF00281 Ribosomal_L5: Ribosom 22.9 1.2E+02 0.0025 16.8 2.6 21 8-28 10-30 (56)
123 PF14076 DUF4258: Domain of un 22.8 79 0.0017 17.4 1.9 19 14-34 12-30 (73)
124 cd08596 PI-PLCc_epsilon Cataly 22.8 1.4E+02 0.0031 21.9 3.6 24 20-44 31-54 (254)
125 PLN03241 magnesium chelatase s 22.8 3.2E+02 0.0069 25.0 6.3 61 37-97 921-991 (1353)
126 COG0044 PyrC Dihydroorotase an 22.5 66 0.0014 25.2 2.0 33 11-43 275-307 (430)
127 PF09866 DUF2093: Uncharacteri 22.3 1.1E+02 0.0025 16.2 2.3 24 4-27 2-25 (42)
128 PRK12321 cobN cobaltochelatase 22.2 3.5E+02 0.0075 24.2 6.3 68 20-97 696-772 (1100)
129 cd01096 Alkanal_monooxygenase 22.0 43 0.00093 24.6 0.8 18 2-19 94-111 (315)
130 PRK12310 hydroxylamine reducta 21.9 85 0.0018 24.8 2.5 20 21-40 265-284 (433)
131 PRK00745 4-oxalocrotonate taut 21.9 1.4E+02 0.003 16.0 2.8 25 65-89 10-34 (62)
132 KOG1975 mRNA cap methyltransfe 21.9 1.2E+02 0.0026 23.6 3.1 41 2-46 225-269 (389)
133 PRK08734 lipid A biosynthesis 21.8 3.3E+02 0.0071 19.9 7.0 22 21-42 173-194 (305)
134 COG1576 Uncharacterized conser 21.6 91 0.002 21.2 2.3 34 2-35 62-96 (155)
135 TIGR00787 dctP tripartite ATP- 21.6 2.7E+02 0.0059 19.5 4.9 35 6-40 27-62 (257)
136 TIGR02257 cobalto_cobN cobalto 21.5 3.6E+02 0.0078 24.1 6.3 67 21-97 711-786 (1122)
137 PRK05989 cobN cobaltochelatase 21.5 3.6E+02 0.0077 24.4 6.3 61 37-97 823-892 (1244)
138 PRK02382 dihydroorotase; Provi 21.5 80 0.0017 24.3 2.2 33 11-43 274-306 (443)
139 KOG1370 S-adenosylhomocysteine 21.3 42 0.00091 25.9 0.6 18 1-18 288-305 (434)
140 PRK08417 dihydroorotase; Provi 21.2 73 0.0016 24.1 1.9 25 19-43 255-279 (386)
141 cd08632 PI-PLCc_eta1 Catalytic 21.1 1.6E+02 0.0034 21.7 3.6 66 20-87 31-119 (253)
142 PF03880 DbpA: DbpA RNA bindin 21.0 92 0.002 17.8 2.0 23 9-31 3-25 (74)
143 cd06150 YjgF_YER057c_UK114_lik 20.7 77 0.0017 19.3 1.7 37 60-96 15-53 (105)
144 COG1168 MalY Bifunctional PLP- 20.7 2.9E+02 0.0062 21.7 5.0 47 14-81 140-189 (388)
145 PRK08943 lipid A biosynthesis 20.7 3.5E+02 0.0076 19.8 5.6 22 21-42 191-212 (314)
146 KOG1358 Serine palmitoyltransf 20.7 49 0.0011 26.2 0.9 54 37-90 56-128 (467)
147 PLN02599 dihydroorotase 20.6 75 0.0016 24.3 1.9 26 18-43 245-271 (364)
148 PRK13713 conjugal transfer pro 20.6 99 0.0021 20.1 2.2 29 59-87 82-114 (118)
149 PF00497 SBP_bac_3: Bacterial 20.6 1.4E+02 0.003 19.4 3.1 24 18-41 138-161 (225)
150 PF07994 NAD_binding_5: Myo-in 20.5 58 0.0013 24.3 1.3 30 70-99 125-154 (295)
151 cd08598 PI-PLC1c_yeast Catalyt 20.2 3.4E+02 0.0075 19.6 7.5 69 19-91 30-123 (231)
152 PRK15174 Vi polysaccharide exp 20.2 4.9E+02 0.011 21.3 7.5 72 21-92 535-639 (656)
153 cd01914 HCP Hybrid cluster pro 20.1 98 0.0021 24.4 2.5 20 21-40 259-278 (423)
154 COG0499 SAM1 S-adenosylhomocys 20.1 46 0.00099 26.1 0.6 34 1-34 283-318 (420)
No 1
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=5.8e-37 Score=227.21 Aligned_cols=94 Identities=31% Similarity=0.632 Sum_probs=91.0
Q ss_pred CCCCCCCcEEEEccCCcccCHHHHHHHHHhCCcceEEEecCCCCCCCCCCccccCCceEeccCCCCCcHHHHHHHHHHHH
Q 045269 1 MSDVCTSSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGGVTEHSYRSTAKVVG 80 (99)
Q Consensus 1 l~~mk~~ailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~~~~~~~~~~~~ 80 (99)
|++||+|++|||+|||++||++||++||++|+|+||+||||++||++.++|||.+|||++|||+||+|.|++.+++..++
T Consensus 220 ~a~MK~gailIN~aRG~vVde~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHia~~T~ea~~~~~~~~~ 299 (324)
T COG0111 220 LAKMKPGAILINAARGGVVDEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQERVAEIVA 299 (324)
T ss_pred HhhCCCCeEEEECCCcceecHHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECCcccccCHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCc
Q 045269 81 DVALQLHAGTPLTG 94 (99)
Q Consensus 81 ~~l~~~~~g~~~~~ 94 (99)
+|+.+|++|+++.+
T Consensus 300 ~~i~~~l~g~~~~~ 313 (324)
T COG0111 300 ENIVRYLAGGPVVN 313 (324)
T ss_pred HHHHHHHcCCCCCC
Confidence 99999999998543
No 2
>PLN02928 oxidoreductase family protein
Probab=100.00 E-value=9.1e-37 Score=227.75 Aligned_cols=99 Identities=72% Similarity=1.141 Sum_probs=97.2
Q ss_pred CCCCCCCcEEEEccCCcccCHHHHHHHHHhCCcceEEEecCCCCCCCCCCccccCCceEeccCCCCCcHHHHHHHHHHHH
Q 045269 1 MSDVCTSSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGGVTEHSYRSTAKVVG 80 (99)
Q Consensus 1 l~~mk~~ailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~~~~~~~~~~~~ 80 (99)
|++||+|++|||+|||++||++||++||++|+|+||+||||++||++.++|||++|||++|||+||+|.+++.++.+.++
T Consensus 249 l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPHia~~t~~~~~~~~~~~~ 328 (347)
T PLN02928 249 LSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPHVAGVTEYSYRSMGKIVG 328 (347)
T ss_pred HhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEECCcCCCChHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCcccccC
Q 045269 81 DVALQLHAGTPLTGIEPVN 99 (99)
Q Consensus 81 ~~l~~~~~g~~~~~~~~~n 99 (99)
+|+.+|++|+++.++.|+|
T Consensus 329 ~nl~~~~~g~~~~~~~~~~ 347 (347)
T PLN02928 329 DAALQLHAGRPLTGIEFVN 347 (347)
T ss_pred HHHHHHHCCCCCCceeecC
Confidence 9999999999999999998
No 3
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=100.00 E-value=4.9e-36 Score=222.09 Aligned_cols=96 Identities=25% Similarity=0.412 Sum_probs=92.7
Q ss_pred CCCCCCCcEEEEccCCcccCHHHHHHHHHhCCcceEEEecCCCCCCCCCCccccCCceEeccCCCCCcHHHHHHHHHHHH
Q 045269 1 MSDVCTSSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGGVTEHSYRSTAKVVG 80 (99)
Q Consensus 1 l~~mk~~ailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~~~~~~~~~~~~ 80 (99)
|++||+|++|||+|||++||++||++||++|+|+||+||||++||++.++|||++|||++|||+||+|.+++.++...++
T Consensus 223 l~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~ 302 (323)
T PRK15409 223 FAKMKSSAIFINAGRGPVVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETRYNMAACAV 302 (323)
T ss_pred HhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999998999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCccc
Q 045269 81 DVALQLHAGTPLTGIE 96 (99)
Q Consensus 81 ~~l~~~~~g~~~~~~~ 96 (99)
+|+.+|++|+++.+.+
T Consensus 303 ~ni~~~~~g~~~~~~v 318 (323)
T PRK15409 303 DNLIDALQGKVEKNCV 318 (323)
T ss_pred HHHHHHHcCCCCCccc
Confidence 9999999999887754
No 4
>PRK06487 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=3.4e-35 Score=217.02 Aligned_cols=93 Identities=33% Similarity=0.527 Sum_probs=89.6
Q ss_pred CCCCCCCcEEEEccCCcccCHHHHHHHHHhCCcceEEEecCCCCCCCCCCcccc--CCceEeccCCCCCcHHHHHHHHHH
Q 045269 1 MSDVCTSSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILK--FQSVLITPHVGGVTEHSYRSTAKV 78 (99)
Q Consensus 1 l~~mk~~ailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~--~~nvi~TPH~a~~t~~~~~~~~~~ 78 (99)
|++||+|++|||+|||++||++||++||++|+|+||+||||++||++.++|||. +|||++|||+||+|.+++.++...
T Consensus 220 ~~~mk~ga~lIN~aRG~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia~~t~e~~~~~~~~ 299 (317)
T PRK06487 220 LALMKPGALLINTARGGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSREARQRIVGQ 299 (317)
T ss_pred HhcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccccCCHHHHHHHHHH
Confidence 679999999999999999999999999999999999999999999988999995 899999999999999999999999
Q ss_pred HHHHHHHHHcCCCCC
Q 045269 79 VGDVALQLHAGTPLT 93 (99)
Q Consensus 79 ~~~~l~~~~~g~~~~ 93 (99)
+++|+.+|++|+++.
T Consensus 300 ~~~ni~~~~~g~~~~ 314 (317)
T PRK06487 300 LAENARAFFAGKPLR 314 (317)
T ss_pred HHHHHHHHHcCCCCc
Confidence 999999999998764
No 5
>PRK07574 formate dehydrogenase; Provisional
Probab=100.00 E-value=7.8e-35 Score=219.88 Aligned_cols=97 Identities=30% Similarity=0.412 Sum_probs=93.7
Q ss_pred CCCCCCCcEEEEccCCcccCHHHHHHHHHhCCcceEEEecCCCCCCCCCCccccCCceEeccCCCCCcHHHHHHHHHHHH
Q 045269 1 MSDVCTSSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGGVTEHSYRSTAKVVG 80 (99)
Q Consensus 1 l~~mk~~ailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~~~~~~~~~~~~ 80 (99)
|++||+|++|||+|||++||++||++||++|+|+||++|||++||++.++|||++|||++|||+||+|.+++.++.+.++
T Consensus 271 l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~~~~~~~~~ 350 (385)
T PRK07574 271 LSRMKRGSYLVNTARGKIVDRDAVVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQARYAAGTR 350 (385)
T ss_pred HhcCCCCcEEEECCCCchhhHHHHHHHHHhCCccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCcccc
Q 045269 81 DVALQLHAGTPLTGIEP 97 (99)
Q Consensus 81 ~~l~~~~~g~~~~~~~~ 97 (99)
+|+.+|++|+++.+...
T Consensus 351 ~ni~~~~~G~~~~~~~~ 367 (385)
T PRK07574 351 EILECFFEGRPIRDEYL 367 (385)
T ss_pred HHHHHHHcCCCCCCCce
Confidence 99999999999988643
No 6
>PLN03139 formate dehydrogenase; Provisional
Probab=100.00 E-value=8.5e-35 Score=219.71 Aligned_cols=98 Identities=29% Similarity=0.429 Sum_probs=93.8
Q ss_pred CCCCCCCcEEEEccCCcccCHHHHHHHHHhCCcceEEEecCCCCCCCCCCccccCCceEeccCCCCCcHHHHHHHHHHHH
Q 045269 1 MSDVCTSSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGGVTEHSYRSTAKVVG 80 (99)
Q Consensus 1 l~~mk~~ailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~~~~~~~~~~~~ 80 (99)
|++||+|++|||+|||++||++||++||++|+|+||++|||++||++.++|||.+|||++|||+||.|.+++.++.+.++
T Consensus 278 l~~mk~ga~lIN~aRG~iVDe~AL~~AL~sG~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~~~~~r~~~~~~ 357 (386)
T PLN03139 278 IAKMKKGVLIVNNARGAIMDTQAVADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVK 357 (386)
T ss_pred HhhCCCCeEEEECCCCchhhHHHHHHHHHcCCceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCccccc
Q 045269 81 DVALQLHAGTPLTGIEPV 98 (99)
Q Consensus 81 ~~l~~~~~g~~~~~~~~~ 98 (99)
+|+.+|++|++++...+|
T Consensus 358 ~nl~~~~~G~~~~~~~~i 375 (386)
T PLN03139 358 DMLDRYFKGEDFPAQNYI 375 (386)
T ss_pred HHHHHHHcCCCCCCccee
Confidence 999999999987776544
No 7
>PRK06932 glycerate dehydrogenase; Provisional
Probab=100.00 E-value=1.3e-34 Score=213.71 Aligned_cols=91 Identities=25% Similarity=0.452 Sum_probs=87.5
Q ss_pred CCCCCCCcEEEEccCCcccCHHHHHHHHHhCCcceEEEecCCCCCCCCCCccc----cCCceEeccCCCCCcHHHHHHHH
Q 045269 1 MSDVCTSSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPIL----KFQSVLITPHVGGVTEHSYRSTA 76 (99)
Q Consensus 1 l~~mk~~ailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~----~~~nvi~TPH~a~~t~~~~~~~~ 76 (99)
|++||+|++|||+|||++||++||++||++|+|+||+||||++||++.++||| ++|||++|||+||+|.+++.++.
T Consensus 220 l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~~~~~pl~~~~~~~pnvilTPHia~~t~e~~~~~~ 299 (314)
T PRK06932 220 LALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEKDNPLIQAAKRLPNLLITPHIAWASDSAVTTLV 299 (314)
T ss_pred HHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCCCCCCCCCChhhHhhcCCCCEEECCccccCcHHHHHHHH
Confidence 67999999999999999999999999999999999999999999999999998 48999999999999999999999
Q ss_pred HHHHHHHHHHHcCCC
Q 045269 77 KVVGDVALQLHAGTP 91 (99)
Q Consensus 77 ~~~~~~l~~~~~g~~ 91 (99)
..+++|+.+|++|+.
T Consensus 300 ~~~~~ni~~~~~~g~ 314 (314)
T PRK06932 300 NKVAQNIEEFVQQGK 314 (314)
T ss_pred HHHHHHHHHHHhcCC
Confidence 999999999998763
No 8
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=100.00 E-value=3.5e-34 Score=211.17 Aligned_cols=89 Identities=26% Similarity=0.480 Sum_probs=86.4
Q ss_pred CCCCCCCcEEEEccCCcccCHHHHHHHHHhCCcceEEEecCCCCCCCCCCccccC---CceEeccCCCCCcHHHHHHHHH
Q 045269 1 MSDVCTSSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKF---QSVLITPHVGGVTEHSYRSTAK 77 (99)
Q Consensus 1 l~~mk~~ailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~---~nvi~TPH~a~~t~~~~~~~~~ 77 (99)
|++||+|++|||+|||++||++||++||++|+|+ |+||||++||++.++|||.+ |||++|||+||+|.+++.++..
T Consensus 219 ~~~Mk~~a~lIN~aRG~vVDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~a~~t~e~~~~~~~ 297 (311)
T PRK08410 219 LKLLKDGAILINVGRGGIVNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASKEARKTLIE 297 (311)
T ss_pred HHhCCCCeEEEECCCccccCHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECCccccCCHHHHHHHHH
Confidence 6799999999999999999999999999999999 99999999999999999987 8999999999999999999999
Q ss_pred HHHHHHHHHHcCC
Q 045269 78 VVGDVALQLHAGT 90 (99)
Q Consensus 78 ~~~~~l~~~~~g~ 90 (99)
.+++|+.+|++|+
T Consensus 298 ~~~~nl~~~~~g~ 310 (311)
T PRK08410 298 KVKENIKDFLEGG 310 (311)
T ss_pred HHHHHHHHHHcCC
Confidence 9999999999986
No 9
>PRK13243 glyoxylate reductase; Reviewed
Probab=100.00 E-value=5.1e-34 Score=211.89 Aligned_cols=95 Identities=26% Similarity=0.497 Sum_probs=91.2
Q ss_pred CCCCCCCcEEEEccCCcccCHHHHHHHHHhCCcceEEEecCCCCCCCCCCccccCCceEeccCCCCCcHHHHHHHHHHHH
Q 045269 1 MSDVCTSSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGGVTEHSYRSTAKVVG 80 (99)
Q Consensus 1 l~~mk~~ailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~~~~~~~~~~~~ 80 (99)
|++||+|++|||+|||++||++||+++|++|+|+||+||||+.||++ ++|||++|||++|||+||+|.+++.++.+.++
T Consensus 227 ~~~mk~ga~lIN~aRg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~-~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~ 305 (333)
T PRK13243 227 LKLMKPTAILVNTARGKVVDTKALVKALKEGWIAGAGLDVFEEEPYY-NEELFSLKNVVLAPHIGSATFEAREGMAELVA 305 (333)
T ss_pred HhcCCCCeEEEECcCchhcCHHHHHHHHHcCCeEEEEeccCCCCCCC-CchhhcCCCEEECCcCCcCHHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999986 89999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCccc
Q 045269 81 DVALQLHAGTPLTGIE 96 (99)
Q Consensus 81 ~~l~~~~~g~~~~~~~ 96 (99)
+|+.+|++|+++.+++
T Consensus 306 ~ni~~~~~g~~~~~~v 321 (333)
T PRK13243 306 ENLIAFKRGEVPPTLV 321 (333)
T ss_pred HHHHHHHcCCCCCccc
Confidence 9999999999887754
No 10
>PLN02306 hydroxypyruvate reductase
Probab=100.00 E-value=8.3e-34 Score=214.38 Aligned_cols=95 Identities=22% Similarity=0.344 Sum_probs=90.9
Q ss_pred CCCCCCCcEEEEccCCcccCHHHHHHHHHhCCcceEEEecCCCCCCCCCCccccCCceEeccCCCCCcHHHHHHHHHHHH
Q 045269 1 MSDVCTSSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGGVTEHSYRSTAKVVG 80 (99)
Q Consensus 1 l~~mk~~ailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~~~~~~~~~~~~ 80 (99)
|++||+|++|||+|||++||++||++||++|+++||+||||++||+ +++|||++|||++|||+||+|.++++++...++
T Consensus 259 l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~-~~~~L~~~pNVilTPHiag~T~e~~~~~~~~~~ 337 (386)
T PLN02306 259 LALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPY-MKPGLADMKNAVVVPHIASASKWTREGMATLAA 337 (386)
T ss_pred HHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCC-CcchHhhCCCEEECCccccCcHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999999996 567899999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCccc
Q 045269 81 DVALQLHAGTPLTGIE 96 (99)
Q Consensus 81 ~~l~~~~~g~~~~~~~ 96 (99)
+|+.+|++|+++.+.+
T Consensus 338 ~ni~~~~~g~~~~~~~ 353 (386)
T PLN02306 338 LNVLGKLKGYPVWGDP 353 (386)
T ss_pred HHHHHHHcCCCCcccc
Confidence 9999999999998854
No 11
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=100.00 E-value=7.8e-34 Score=209.52 Aligned_cols=94 Identities=29% Similarity=0.454 Sum_probs=89.3
Q ss_pred CCCCCCCcEEEEccCCcccCHHHHHHHHHhCCcceEEEecCCCCCCCCCCccccCCceEeccCCCCCcHHHHHHHHHHHH
Q 045269 1 MSDVCTSSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGGVTEHSYRSTAKVVG 80 (99)
Q Consensus 1 l~~mk~~ailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~~~~~~~~~~~~ 80 (99)
|++||+|++|||+|||++||++||++||++|+++||++|||++||++.++|||.+|||++|||+||.|.+. ++...+.
T Consensus 213 l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~nvi~TPHiag~t~~~--~~~~~~~ 290 (312)
T PRK15469 213 LEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHPRVAITPHVAAVTRPA--EAVEYIS 290 (312)
T ss_pred HhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCCCeEECCcCCCCcCHH--HHHHHHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999874 5788999
Q ss_pred HHHHHHHcCCCCCccc
Q 045269 81 DVALQLHAGTPLTGIE 96 (99)
Q Consensus 81 ~~l~~~~~g~~~~~~~ 96 (99)
+|+.+|.+|+++.+.|
T Consensus 291 ~n~~~~~~g~~~~~~V 306 (312)
T PRK15469 291 RTIAQLEKGERVCGQV 306 (312)
T ss_pred HHHHHHHcCCCCcccC
Confidence 9999999999998865
No 12
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=100.00 E-value=6.3e-33 Score=210.80 Aligned_cols=96 Identities=27% Similarity=0.458 Sum_probs=91.0
Q ss_pred CCCCCCCcEEEEccCCcccCHHHHHHHHHhCCcceEEEecCCCCCCCC----CCccccCCceEeccCCCCCcHHHHHHHH
Q 045269 1 MSDVCTSSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDP----NDPILKFQSVLITPHVGGVTEHSYRSTA 76 (99)
Q Consensus 1 l~~mk~~ailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~----~~~l~~~~nvi~TPH~a~~t~~~~~~~~ 76 (99)
|++||+|++|||+|||++||++||++||++|+|+||++|||++||++. ++|||++|||++|||+||+|.+++.++.
T Consensus 226 l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~t~ea~~~~~ 305 (409)
T PRK11790 226 LALMKPGAILINASRGTVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQEAQENIG 305 (409)
T ss_pred HhcCCCCeEEEECCCCcccCHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCCHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999865 4699999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCccc
Q 045269 77 KVVGDVALQLHAGTPLTGIE 96 (99)
Q Consensus 77 ~~~~~~l~~~~~g~~~~~~~ 96 (99)
+.+++|+.+|++|+++.+.+
T Consensus 306 ~~~~~nl~~~~~~~~~~~~v 325 (409)
T PRK11790 306 LEVAGKLVKYSDNGSTLSAV 325 (409)
T ss_pred HHHHHHHHHHHcCCCcCcce
Confidence 99999999999998887754
No 13
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=100.00 E-value=6.2e-33 Score=205.69 Aligned_cols=97 Identities=30% Similarity=0.483 Sum_probs=92.3
Q ss_pred CCCCCCCcEEEEccCCcccCHHHHHHHHHhCCcceEEEecCCCCCCCCCCccccCCc---eEeccCCCCCcHHHHHHHHH
Q 045269 1 MSDVCTSSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQS---VLITPHVGGVTEHSYRSTAK 77 (99)
Q Consensus 1 l~~mk~~ailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~n---vi~TPH~a~~t~~~~~~~~~ 77 (99)
|++||+|++|||||||++||++||++||++|+|+|||+|||+.||.+.++||+.++| |++|||+|+.|.+++.++++
T Consensus 223 l~~mk~ga~lVNtaRG~~VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~at~ea~~~m~~ 302 (324)
T COG1052 223 LAKMKPGAILVNTARGGLVDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEARKAMAE 302 (324)
T ss_pred HHhCCCCeEEEECCCccccCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEccccccccHHHHHHHHH
Confidence 579999999999999999999999999999999999999999999877999998877 99999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCcccc
Q 045269 78 VVGDVALQLHAGTPLTGIEP 97 (99)
Q Consensus 78 ~~~~~l~~~~~g~~~~~~~~ 97 (99)
.+++|+..|++|+.+.+.+.
T Consensus 303 ~~~~nl~~~~~g~~~~~~v~ 322 (324)
T COG1052 303 LALENLEAFFDGGVPPNEVN 322 (324)
T ss_pred HHHHHHHHHHcCCCCCCCCC
Confidence 99999999999999888663
No 14
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=99.98 E-value=2.8e-32 Score=212.38 Aligned_cols=95 Identities=29% Similarity=0.523 Sum_probs=91.0
Q ss_pred CCCCCCCcEEEEccCCcccCHHHHHHHHHhCCcceEEEecCCCCCCCCCCccccCCceEeccCCCCCcHHHHHHHHHHHH
Q 045269 1 MSDVCTSSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGGVTEHSYRSTAKVVG 80 (99)
Q Consensus 1 l~~mk~~ailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~~~~~~~~~~~~ 80 (99)
|++||+|++|||+|||++||++||++||++|+|+||+||||++||+ .++|||++|||++|||+||+|.+++.++.+.++
T Consensus 216 l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~-~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~ 294 (525)
T TIGR01327 216 LAKMKKGVIIVNCARGGIIDEAALYEALEEGHVRAAALDVFEKEPP-TDNPLFDLDNVIATPHLGASTREAQENVATQVA 294 (525)
T ss_pred HhcCCCCeEEEEcCCCceeCHHHHHHHHHcCCeeEEEEecCCCCCC-CCChhhcCCCeEECCCccccHHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999995 689999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCccc
Q 045269 81 DVALQLHAGTPLTGIE 96 (99)
Q Consensus 81 ~~l~~~~~g~~~~~~~ 96 (99)
+|+.+|++|+++.+.+
T Consensus 295 ~ni~~~~~g~~~~~~v 310 (525)
T TIGR01327 295 EQVLDALKGLPVPNAV 310 (525)
T ss_pred HHHHHHHcCCCCCcee
Confidence 9999999999887754
No 15
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=99.98 E-value=2.7e-32 Score=212.54 Aligned_cols=95 Identities=28% Similarity=0.516 Sum_probs=91.3
Q ss_pred CCCCCCCcEEEEccCCcccCHHHHHHHHHhCCcceEEEecCCCCCCCCCCccccCCceEeccCCCCCcHHHHHHHHHHHH
Q 045269 1 MSDVCTSSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGGVTEHSYRSTAKVVG 80 (99)
Q Consensus 1 l~~mk~~ailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~~~~~~~~~~~~ 80 (99)
|++||+|++|||+|||++||++||++||++|+|+||+||||++||++ ++|||++|||++|||+||+|.+++.++.+.++
T Consensus 217 l~~mk~ga~lIN~aRG~~vde~aL~~aL~~g~i~gAaLDVf~~EP~~-~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~ 295 (526)
T PRK13581 217 LAKMKPGVRIINCARGGIIDEAALAEALKSGKVAGAALDVFEKEPPT-DSPLFELPNVVVTPHLGASTAEAQENVAIQVA 295 (526)
T ss_pred HhcCCCCeEEEECCCCceeCHHHHHHHHhcCCeeEEEEecCCCCCCC-CchhhcCCCeeEcCccccchHHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999975 89999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCccc
Q 045269 81 DVALQLHAGTPLTGIE 96 (99)
Q Consensus 81 ~~l~~~~~g~~~~~~~ 96 (99)
+|+.+|++|+++.+.+
T Consensus 296 ~ni~~~~~g~~~~~~v 311 (526)
T PRK13581 296 EQVIDALRGGPVPNAV 311 (526)
T ss_pred HHHHHHHcCCCcCcee
Confidence 9999999999988765
No 16
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=99.97 E-value=3.6e-32 Score=201.92 Aligned_cols=96 Identities=18% Similarity=0.234 Sum_probs=89.0
Q ss_pred CCCCCCCcEEEEccCCcccCHHHHHHHHHhCCcceEEEecCCCCCCC-------------CCCccccCCceEeccCCCCC
Q 045269 1 MSDVCTSSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFD-------------PNDPILKFQSVLITPHVGGV 67 (99)
Q Consensus 1 l~~mk~~ailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~-------------~~~~l~~~~nvi~TPH~a~~ 67 (99)
|++||+|++|||+|||++||++||++||++|+++||+||||++||+. ..+|||++|||++|||+||+
T Consensus 221 l~~mk~gavlIN~aRG~~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~ 300 (330)
T PRK12480 221 FDHVKKGAILVNAARGAVINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTPHIAFF 300 (330)
T ss_pred HhcCCCCcEEEEcCCccccCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEECCccccc
Confidence 47899999999999999999999999999999999999999999952 12479999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHcCCCCCccc
Q 045269 68 TEHSYRSTAKVVGDVALQLHAGTPLTGIE 96 (99)
Q Consensus 68 t~~~~~~~~~~~~~~l~~~~~g~~~~~~~ 96 (99)
|.+++.++.+.+++|+.+|++|+...+.+
T Consensus 301 t~~~~~~~~~~~~~n~~~~~~~~~~~~~~ 329 (330)
T PRK12480 301 SDEAVQNLVEGGLNAALSVINTGTCETRL 329 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCcccC
Confidence 99999999999999999999999887754
No 17
>PRK08605 D-lactate dehydrogenase; Validated
Probab=99.97 E-value=3e-30 Score=191.64 Aligned_cols=96 Identities=22% Similarity=0.313 Sum_probs=89.1
Q ss_pred CCCCCCCcEEEEccCCcccCHHHHHHHHHhCCcceEEEecCCCCC--CCCCC-----------ccccCCceEeccCCCCC
Q 045269 1 MSDVCTSSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEP--FDPND-----------PILKFQSVLITPHVGGV 67 (99)
Q Consensus 1 l~~mk~~ailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep--~~~~~-----------~l~~~~nvi~TPH~a~~ 67 (99)
|++||+|++|||+|||.++|+++|.++|++|+|+||+||||+.|| ++.++ +||++|||++|||+||+
T Consensus 223 l~~mk~gailIN~sRG~~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~ 302 (332)
T PRK08605 223 FKHFKKGAVFVNCARGSLVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILTPHIAFY 302 (332)
T ss_pred HhcCCCCcEEEECCCCcccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccchhhHHHhcCCCEEECCccccc
Confidence 468999999999999999999999999999999999999999998 34554 49999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHHHHcCCCCCccc
Q 045269 68 TEHSYRSTAKVVGDVALQLHAGTPLTGIE 96 (99)
Q Consensus 68 t~~~~~~~~~~~~~~l~~~~~g~~~~~~~ 96 (99)
|.++++++...+++|+.+|++|++..+.+
T Consensus 303 t~e~~~~~~~~~~~n~~~~~~g~~~~~~~ 331 (332)
T PRK08605 303 TDAAVKNLIVDALDATLEVLQTGTTRLRV 331 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCCCCc
Confidence 99999999999999999999999887753
No 18
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=99.96 E-value=3.1e-30 Score=190.89 Aligned_cols=90 Identities=28% Similarity=0.478 Sum_probs=86.6
Q ss_pred CCCCCCCcEEEEccCCcccCHHHHHHHHHhCCcceEEEecCCCCCCCC--CCccccCCceEeccCCCCCcHHHHHHHHHH
Q 045269 1 MSDVCTSSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDP--NDPILKFQSVLITPHVGGVTEHSYRSTAKV 78 (99)
Q Consensus 1 l~~mk~~ailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~--~~~l~~~~nvi~TPH~a~~t~~~~~~~~~~ 78 (99)
|++||+|..+||+|||++||+.||++||++|+++|||+|||+.||+.. ++.|.+||||++|||+|++|.|++.+++..
T Consensus 223 fA~mKkGVriIN~aRGGvVDe~ALv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT~EAq~~iaie 302 (406)
T KOG0068|consen 223 FAKMKKGVRIINVARGGVVDEPALVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGASTEEAQSRIAIE 302 (406)
T ss_pred HHHhhCCcEEEEecCCceechHHHHHHHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccchHHHHHHHHHH
Confidence 678999999999999999999999999999999999999999999754 789999999999999999999999999999
Q ss_pred HHHHHHHHHcCC
Q 045269 79 VGDVALQLHAGT 90 (99)
Q Consensus 79 ~~~~l~~~~~g~ 90 (99)
+++++..|.+|.
T Consensus 303 vaea~~~~~~~~ 314 (406)
T KOG0068|consen 303 VAEAVSDYINGN 314 (406)
T ss_pred HHHHHHHHhccC
Confidence 999999999993
No 19
>PRK06436 glycerate dehydrogenase; Provisional
Probab=99.96 E-value=2e-29 Score=185.57 Aligned_cols=91 Identities=20% Similarity=0.360 Sum_probs=83.9
Q ss_pred CCCCCCCcEEEEccCCcccCHHHHHHHHHhCCcceEEEecCCCCCCCCCCccccCCceEeccCCC-CCcHHHHHHHHHHH
Q 045269 1 MSDVCTSSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVG-GVTEHSYRSTAKVV 79 (99)
Q Consensus 1 l~~mk~~ailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a-~~t~~~~~~~~~~~ 79 (99)
|++||+|++|||+|||++||++||+++|++|++.||++|||++||++.++ .+|||++|||++ ++|.++++++...+
T Consensus 196 l~~mk~ga~lIN~sRG~~vd~~aL~~aL~~g~i~~a~lDV~~~EP~~~~~---~~~nviiTPHi~g~~t~e~~~~~~~~~ 272 (303)
T PRK06436 196 LSLFRKGLAIINVARADVVDKNDMLNFLRNHNDKYYLSDVWWNEPIITET---NPDNVILSPHVAGGMSGEIMQPAVALA 272 (303)
T ss_pred HhcCCCCeEEEECCCccccCHHHHHHHHHcCCceEEEEccCCCCCCCccC---CCCCEEECCccccccCHHHHHHHHHHH
Confidence 57899999999999999999999999999999999999999999987665 689999999986 58999999999999
Q ss_pred HHHHHHHHcCCCCCcc
Q 045269 80 GDVALQLHAGTPLTGI 95 (99)
Q Consensus 80 ~~~l~~~~~g~~~~~~ 95 (99)
++|+.+|++|++ .++
T Consensus 273 ~~ni~~~~~g~~-~~~ 287 (303)
T PRK06436 273 FENIKNFFEGKP-KNI 287 (303)
T ss_pred HHHHHHHHcCCC-Cce
Confidence 999999999987 343
No 20
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=99.96 E-value=1.4e-29 Score=187.97 Aligned_cols=96 Identities=33% Similarity=0.551 Sum_probs=92.1
Q ss_pred CCCCCCCcEEEEccCCcccCHHHHHHHHHhCCcceEEEecCCCCCCCCCCccccCCceEeccCCCCCcHHHHHHHHHHHH
Q 045269 1 MSDVCTSSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGGVTEHSYRSTAKVVG 80 (99)
Q Consensus 1 l~~mk~~ailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~~~~~~~~~~~~ 80 (99)
|++||+|++|||+|||+++|+++|.+||++|++.|+++|||++|| +.++||++++||++|||+|+.|.+++.+++..++
T Consensus 240 ~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP-~~~~~l~~~dnvv~~PHigs~t~~t~~~m~~~v~ 318 (336)
T KOG0069|consen 240 IEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEP-PVDHPLLTLDNVVILPHIGSATLETREKMAEIVL 318 (336)
T ss_pred HHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCC-CCCcchhcccceeEecccccCcHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999 8999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCCcccc
Q 045269 81 DVALQLHAGTPLTGIEP 97 (99)
Q Consensus 81 ~~l~~~~~g~~~~~~~~ 97 (99)
.|+.+++.|++....+.
T Consensus 319 ~n~~~~~~g~~~~~~~~ 335 (336)
T KOG0069|consen 319 NNLLAFFSGKPLLTPVL 335 (336)
T ss_pred HHHHHHHccCCCCCcCC
Confidence 99999999998876553
No 21
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=99.96 E-value=2.9e-29 Score=189.41 Aligned_cols=90 Identities=20% Similarity=0.228 Sum_probs=85.1
Q ss_pred CCCCCCCcEEEEccCCcccCHHHHHHHHHhCCcceEEEecCCCCCCCCCCccccCCceEeccCCCCCcHHHHHHHHHHHH
Q 045269 1 MSDVCTSSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGGVTEHSYRSTAKVVG 80 (99)
Q Consensus 1 l~~mk~~ailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~~~~~~~~~~~~ 80 (99)
|++||+|++|||+|||++||++||+++|++|++.||+||||++||. .+++||.. |+++|||+||+|.++..++.++++
T Consensus 194 l~~mk~gailIN~aRG~vVde~AL~~aL~~g~i~~a~LDV~e~EP~-~~~~L~~~-nvi~TPHiAg~s~e~~~r~~~~~~ 271 (381)
T PRK00257 194 LASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQ-IDLELADL-CTIATPHIAGYSLDGKARGTAQIY 271 (381)
T ss_pred HhcCCCCeEEEECCCCcccCHHHHHHHHHhCCCcEEEEeCCCCCCC-CChhhhhC-CEEEcCccccCCHHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999995 67889985 999999999999999999999999
Q ss_pred HHHHHHHcCCCC
Q 045269 81 DVALQLHAGTPL 92 (99)
Q Consensus 81 ~~l~~~~~g~~~ 92 (99)
+++.+|+++.+.
T Consensus 272 ~nl~~~~~~~~~ 283 (381)
T PRK00257 272 QALCRFFGIPAR 283 (381)
T ss_pred HHHHHHHcCCCc
Confidence 999999988753
No 22
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=99.96 E-value=5.1e-29 Score=187.91 Aligned_cols=86 Identities=26% Similarity=0.290 Sum_probs=81.1
Q ss_pred CCCCCCCcEEEEccCCcccCHHHHHHHHHhCCcceEEEecCCCCCCCCCCccccCCceEeccCCCCCcHHHHHHHHHHHH
Q 045269 1 MSDVCTSSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGGVTEHSYRSTAKVVG 80 (99)
Q Consensus 1 l~~mk~~ailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~~~~~~~~~~~~ 80 (99)
|++||+|++|||+|||++||++||+++|++|++.||+||||++||. .+++|+..++ ++|||+||+|.++..++..+++
T Consensus 194 l~~mk~gailIN~aRG~vVDe~AL~~aL~~g~~~ga~LDV~e~EP~-~~~~Ll~~~~-i~TPHiAg~s~e~~~~~~~~~~ 271 (378)
T PRK15438 194 IRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEPE-LNVELLKKVD-IGTPHIAGYTLEGKARGTTQVF 271 (378)
T ss_pred HhcCCCCcEEEECCCchhcCHHHHHHHHHhCCCcEEEEecCCCCCC-CchhhhhcCC-EECCccCcCcHHHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999999995 6778887665 9999999999999999999999
Q ss_pred HHHHHHHc
Q 045269 81 DVALQLHA 88 (99)
Q Consensus 81 ~~l~~~~~ 88 (99)
+++.+|+.
T Consensus 272 ~~l~~~~~ 279 (378)
T PRK15438 272 EAYSKFIG 279 (378)
T ss_pred HHHHHHHc
Confidence 99999994
No 23
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=99.96 E-value=9.2e-30 Score=174.42 Aligned_cols=65 Identities=35% Similarity=0.678 Sum_probs=60.4
Q ss_pred CCCCCCCcEEEEccCCcccCHHHHHHHHHhCCcceEEEecCCCCCCCCCCccccCCceEeccCCC
Q 045269 1 MSDVCTSSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVG 65 (99)
Q Consensus 1 l~~mk~~ailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a 65 (99)
|++||+|++|||+|||++||++||+++|++|++.||++|||+.||++.++|||++|||++|||+|
T Consensus 114 l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~~l~~~~nvi~TPH~a 178 (178)
T PF02826_consen 114 LAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFEPEPLPADSPLWDLPNVILTPHIA 178 (178)
T ss_dssp HHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-SSSSSSTTHHHHTSTTEEEESS-T
T ss_pred eeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCCCCCCCCCChHHcCCCEEEeCccC
Confidence 57899999999999999999999999999999999999999999999999999999999999986
No 24
>KOG0067 consensus Transcription factor CtBP [Transcription]
Probab=99.36 E-value=8.6e-13 Score=99.40 Aligned_cols=86 Identities=26% Similarity=0.363 Sum_probs=75.4
Q ss_pred CCCCCCcEEEEccCCcccCHHHHHHHHHhCCcceEEEecCCCCCCC-CCCccccCCceEeccCCCCCcHHHHHHHHHHHH
Q 045269 2 SDVCTSSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFD-PNDPILKFQSVLITPHVGGVTEHSYRSTAKVVG 80 (99)
Q Consensus 2 ~~mk~~ailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~-~~~~l~~~~nvi~TPH~a~~t~~~~~~~~~~~~ 80 (99)
.+|++|+.++|++||.+||+.+|.++|++|++.+++ |.. ...|+-.-||.++|||.+++++.+..++.+.++
T Consensus 257 kqm~qGaflvnta~gglvdekaLaqaLk~G~i~~aa-------~~~~~~~~l~d~pn~ic~~~ta~~~e~~~~e~re~aa 329 (435)
T KOG0067|consen 257 KQMRQGAFLVNTARGGLVDEKALAQALKSGRIRGAA-------PRSFKQGPLKDAPNLICTPHTAWYSEAASVELREVAA 329 (435)
T ss_pred eeecccceEeeecccccCChHHHHhhhccCceeccc-------CcccccccccCCCCCCCCcccchhhHHHHHHHHHHHh
Confidence 589999999999999999999999999999999988 221 234677889999999999999999999999999
Q ss_pred HHHHHHHcCCCCCc
Q 045269 81 DVALQLHAGTPLTG 94 (99)
Q Consensus 81 ~~l~~~~~g~~~~~ 94 (99)
..++.-+.|..+..
T Consensus 330 ~eiR~ai~g~ip~~ 343 (435)
T KOG0067|consen 330 LEIRRAITGRIPDS 343 (435)
T ss_pred hhhhhccCCCCchh
Confidence 99998888875543
No 25
>PLN02494 adenosylhomocysteinase
Probab=97.78 E-value=9.3e-06 Score=63.48 Aligned_cols=44 Identities=14% Similarity=0.122 Sum_probs=40.0
Q ss_pred CCCCCCCcEEEEccC-CcccCHHHHHHH--HHhCCcceEEEecCCCCC
Q 045269 1 MSDVCTSSLLVNIVR-GGLLDYEAVAHY--LESGHLGGLGLDVAWTEP 45 (99)
Q Consensus 1 l~~mk~~ailIN~aR-g~lvd~~aL~~a--L~~g~i~gaalDV~~~Ep 45 (99)
|++||+|++|+|+|| +..||+++|.++ ++++.++ ..+|+|..+-
T Consensus 328 L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~d 374 (477)
T PLN02494 328 MRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFPD 374 (477)
T ss_pred HhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcCC
Confidence 578999999999999 689999999998 9999998 9999998754
No 26
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=97.71 E-value=3.9e-05 Score=60.10 Aligned_cols=40 Identities=23% Similarity=0.209 Sum_probs=34.7
Q ss_pred CCCCCCCcEEEEccCCcccCHHHHHHHHHhCCcceEEEecCCCCCCC
Q 045269 1 MSDVCTSSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFD 47 (99)
Q Consensus 1 l~~mk~~ailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~ 47 (99)
|++||+|++|||+||+ |++++.++|+++. ++|+++.+|..
T Consensus 328 ~~~MKpGAiLINvGr~---d~Ei~i~aL~~~~----~vdv~evep~v 367 (476)
T PTZ00075 328 MRRMKNNAIVGNIGHF---DNEIQVAELEAYP----GIEIVEIKPQV 367 (476)
T ss_pred HhccCCCcEEEEcCCC---chHHhHHHHHhcC----CceeecccCCC
Confidence 5789999999999999 7889999998754 78999999863
No 27
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=97.60 E-value=4.8e-05 Score=58.55 Aligned_cols=42 Identities=12% Similarity=0.079 Sum_probs=38.8
Q ss_pred CCCCCCCcEEEEccCCcc-cCHHHHHHHHHhCCcceEEEecCC
Q 045269 1 MSDVCTSSLLVNIVRGGL-LDYEAVAHYLESGHLGGLGLDVAW 42 (99)
Q Consensus 1 l~~mk~~ailIN~aRg~l-vd~~aL~~aL~~g~i~gaalDV~~ 42 (99)
|+.||+|++|+|++|+++ ||.++|.+++.+.+..+..+|+|.
T Consensus 269 ~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~ 311 (406)
T TIGR00936 269 FENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYI 311 (406)
T ss_pred HhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEE
Confidence 468999999999999998 999999999988888889999987
No 28
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=96.73 E-value=0.0029 Score=40.94 Aligned_cols=31 Identities=16% Similarity=0.311 Sum_probs=28.5
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHcCCCCCccc
Q 045269 66 GVTEHSYRSTAKVVGDVALQLHAGTPLTGIE 96 (99)
Q Consensus 66 ~~t~~~~~~~~~~~~~~l~~~~~g~~~~~~~ 96 (99)
|+|.+++.++.+.+++|+.+|++|+++.++|
T Consensus 102 ~~T~e~~~~~~~~~~~ni~~~l~g~~~~n~V 132 (133)
T PF00389_consen 102 GYTDEARERMAEIAAENIERFLNGEPPENVV 132 (133)
T ss_dssp TGBHHHHHHHHHHHHHHHHHHHTTST-TTBS
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 7899999999999999999999999999876
No 29
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=86.41 E-value=0.56 Score=36.57 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=22.3
Q ss_pred CCCCCCCcEEEEccCCcc-cCHHHHHH
Q 045269 1 MSDVCTSSLLVNIVRGGL-LDYEAVAH 26 (99)
Q Consensus 1 l~~mk~~ailIN~aRg~l-vd~~aL~~ 26 (99)
|+.||+|++++|++|... +|.++|.+
T Consensus 286 ~~~mK~GailiNvG~~d~Eid~~~L~~ 312 (425)
T PRK05476 286 MEAMKDGAILANIGHFDNEIDVAALEE 312 (425)
T ss_pred HhcCCCCCEEEEcCCCCCccChHHHhh
Confidence 468999999999999887 88888754
No 30
>PF03279 Lip_A_acyltrans: Bacterial lipid A biosynthesis acyltransferase; InterPro: IPR004960 Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A []. The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS []. The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids []. These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units. The bacterial lipid A biosynthesis protein, or lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2.3.1 from EC, transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA during lipopolysaccharide core biosynthesis.; GO: 0016746 transferase activity, transferring acyl groups, 0009244 lipopolysaccharide core region biosynthetic process, 0016021 integral to membrane
Probab=86.40 E-value=3.8 Score=29.65 Aligned_cols=83 Identities=14% Similarity=0.114 Sum_probs=56.7
Q ss_pred CCcEEEEccCCcccCHHHHHHHHHhCCcceEEEecCCCCC--C-----------C---------CCCccc------c---
Q 045269 6 TSSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEP--F-----------D---------PNDPIL------K--- 54 (99)
Q Consensus 6 ~~ailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep--~-----------~---------~~~~l~------~--- 54 (99)
.|.-+|....+ --+++++|++|++.+...|....+. . + .+.|++ .
T Consensus 170 ~g~~~i~~~~~----~~~~~~~Lk~g~~v~~l~Dq~~~~~~~~~v~FfG~~a~~~~g~a~lA~~~~apvvp~~~~r~~~~ 245 (295)
T PF03279_consen 170 FGIELIPKGEG----IRELIRALKEGGIVGLLGDQDPGKKDGVFVPFFGRPASTPTGPARLARKTGAPVVPVFAYREPDG 245 (295)
T ss_pred cCCeEecchhh----HHHHHHHhccCCEEEEEECCCCCCCCceEEeECCeecccccHHHHHHHHhCCcEEEEEEEEeCCC
Confidence 45556665544 6789999999999999999764432 0 0 011111 0
Q ss_pred -CCceEeccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 045269 55 -FQSVLITPHVGGVTEHSYRSTAKVVGDVALQLHAGTPL 92 (99)
Q Consensus 55 -~~nvi~TPH~a~~t~~~~~~~~~~~~~~l~~~~~g~~~ 92 (99)
.-.+.+.|.+.....+......+...+.+++++...|-
T Consensus 246 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~lE~~Ir~~P~ 284 (295)
T PF03279_consen 246 SHYRIEIEPPLDFPSSEDIEELTQRYNDRLEEWIREHPE 284 (295)
T ss_pred CEEEEEEeecccCCccchHHHHHHHHHHHHHHHHHcChH
Confidence 12567888888777767778888888888888877664
No 31
>PF04577 DUF563: Protein of unknown function (DUF563); InterPro: IPR007657 This is a family of uncharacterised glycosyltransferases belonging to glycosyltransferase family 61. Sequences are further processed into a mature form.; GO: 0016757 transferase activity, transferring glycosyl groups
Probab=83.05 E-value=1.6 Score=29.54 Aligned_cols=60 Identities=18% Similarity=0.257 Sum_probs=39.6
Q ss_pred CCcEEEEc---cCCcccCHHHHHHHHHhCCcceEEEecCCCC--CCCCCCccccCCceEeccCCCCCcHH
Q 045269 6 TSSLLVNI---VRGGLLDYEAVAHYLESGHLGGLGLDVAWTE--PFDPNDPILKFQSVLITPHVGGVTEH 70 (99)
Q Consensus 6 ~~ailIN~---aRg~lvd~~aL~~aL~~g~i~gaalDV~~~E--p~~~~~~l~~~~nvi~TPH~a~~t~~ 70 (99)
|..++++= ++..+.+++++.+.|++-. +.+...| ++...-.++..-.++++||-|+.+..
T Consensus 103 p~i~~i~R~~~~~R~i~Ne~el~~~l~~~~-----~~~v~~~~~s~~eqv~~~~~a~viig~hGs~l~n~ 167 (206)
T PF04577_consen 103 PRILYISRRKSGSRRILNEDELLEILKKYG-----FEVVDPEDLSFEEQVKLFASAKVIIGPHGSALTNL 167 (206)
T ss_pred CeEEEEecCCCCCCcCcCHHHHHHHHhhCC-----eEEEeCCCCCHHHHHHHhcCCCEEEecCchHhhee
Confidence 33346655 5778999999999888433 3344344 32223356778899999998876543
No 32
>PRK09344 phosphoenolpyruvate carboxykinase; Provisional
Probab=82.08 E-value=3.5 Score=33.19 Aligned_cols=78 Identities=15% Similarity=0.135 Sum_probs=48.1
Q ss_pred CCcEEEEccC----------CcccCHHHHHHHHHhCCcceEEEecCCCCCCCCCCccccCCce---EeccCCCCCcHHHH
Q 045269 6 TSSLLVNIVR----------GGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSV---LITPHVGGVTEHSY 72 (99)
Q Consensus 6 ~~ailIN~aR----------g~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nv---i~TPH~a~~t~~~~ 72 (99)
-.+++|||+- ..+=..-+|++++-+|.+..+- |...|.=.-.--.+.|.| ++.|--.|...+++
T Consensus 417 ~~vylvNTGw~GG~~g~g~ri~~~~Traii~ai~~G~l~~~~---~~~~p~fg~~vP~~~~gv~~~~l~P~~~w~d~~~y 493 (526)
T PRK09344 417 AKVYLVNTGWTGGPYGTGKRISIKYTRAIINAILDGSLDNAE---TTTDPIFGLAVPTSVPGVDSEILDPRNTWADKAAY 493 (526)
T ss_pred CCEEEEecccccCCCCCCccCCHHHHHHHHHHHhcCCccCCC---ceeCCccCccCCCcCCCCChHhcChhhccCCHHHH
Confidence 4579999974 4555788999999999986321 111221000001234444 99999999887777
Q ss_pred HHHH----HHHHHHHHHH
Q 045269 73 RSTA----KVVGDVALQL 86 (99)
Q Consensus 73 ~~~~----~~~~~~l~~~ 86 (99)
++.+ +.+.+|+.+|
T Consensus 494 ~~~a~~La~~f~~nf~~f 511 (526)
T PRK09344 494 DEKAKKLARLFRENFEKF 511 (526)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 5544 4455566666
No 33
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=80.78 E-value=1.4 Score=34.21 Aligned_cols=26 Identities=12% Similarity=0.249 Sum_probs=22.2
Q ss_pred CCCCCCCcEEEEccCCcc-cCHHHHHH
Q 045269 1 MSDVCTSSLLVNIVRGGL-LDYEAVAH 26 (99)
Q Consensus 1 l~~mk~~ailIN~aRg~l-vd~~aL~~ 26 (99)
|+.||+|++++|+|++.+ +|..+|..
T Consensus 276 l~~mk~GgilvnvG~~~~eId~~~L~~ 302 (413)
T cd00401 276 FEQMKDGAIVCNIGHFDVEIDVKGLKE 302 (413)
T ss_pred HhcCCCCcEEEEeCCCCCccCHHHHHh
Confidence 468999999999999987 88887764
No 34
>PF06345 Drf_DAD: DRF Autoregulatory Domain; InterPro: IPR010465 This domain is found in Diaphanous-related formins (Drfs). It binds the N-terminal GTPase-binding domain; this link is broken when GTP-bound Rho binds to the GBD and activates the protein. The addition of diaphanous activating domains (DAD) to mammalian cells induces actin filament formation, stabilises microtubules, and activates serum-response mediated transcription [].; PDB: 3O4X_H 3OBV_E 2BAP_C 2F31_B.
Probab=80.59 E-value=1.9 Score=17.79 Aligned_cols=12 Identities=17% Similarity=0.445 Sum_probs=9.9
Q ss_pred HHHHHHHHHhCC
Q 045269 21 YEAVAHYLESGH 32 (99)
Q Consensus 21 ~~aL~~aL~~g~ 32 (99)
.+.|++||++|.
T Consensus 3 mdsllealqtg~ 14 (15)
T PF06345_consen 3 MDSLLEALQTGS 14 (15)
T ss_dssp HHHHHHHHHHST
T ss_pred HHHHHHHHHccC
Confidence 368999999985
No 35
>KOG4022 consensus Dihydropteridine reductase DHPR/QDPR [Amino acid transport and metabolism]
Probab=78.99 E-value=20 Score=25.26 Aligned_cols=79 Identities=16% Similarity=0.172 Sum_probs=60.1
Q ss_pred CCCCcEEEEccCCcccCHHHHHHHHHhCCcceEEEecCCCCCCCCCCccccCCceEeccCCCCCcHHHHHHHHHHHHHHH
Q 045269 4 VCTSSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGGVTEHSYRSTAKVVGDVA 83 (99)
Q Consensus 4 mk~~ailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~~~~~~~~~~~~~~l 83 (99)
|..|-++|=-+||.+ -.+++++.+.+.---+.+|+.++|.. + .+ |+-|--..+|++. +.+.+++
T Consensus 1 msagrVivYGGkGAL--GSacv~~FkannywV~siDl~eNe~A--d------~s-I~V~~~~swtEQe-----~~v~~~v 64 (236)
T KOG4022|consen 1 MSAGRVIVYGGKGAL--GSACVEFFKANNYWVLSIDLSENEQA--D------SS-ILVDGNKSWTEQE-----QSVLEQV 64 (236)
T ss_pred CCCceEEEEcCcchH--hHHHHHHHHhcCeEEEEEeecccccc--c------ce-EEecCCcchhHHH-----HHHHHHH
Confidence 556788999999988 46889999998888899999999874 2 12 4556666666654 4567788
Q ss_pred HHHHcCCCCCccccc
Q 045269 84 LQLHAGTPLTGIEPV 98 (99)
Q Consensus 84 ~~~~~g~~~~~~~~~ 98 (99)
-..+.|+.+..+-||
T Consensus 65 g~sL~gekvDav~CV 79 (236)
T KOG4022|consen 65 GSSLQGEKVDAVFCV 79 (236)
T ss_pred HHhhcccccceEEEe
Confidence 888999988887665
No 36
>cd00484 PEPCK_ATP Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity, this model describes the ATP-dependent groups.
Probab=78.81 E-value=5.7 Score=31.85 Aligned_cols=80 Identities=20% Similarity=0.144 Sum_probs=49.4
Q ss_pred CCCcEEEEccC----------CcccCHHHHHHHHHhCCcceEEEecCCCCCC-CCCC--ccccCCceEeccCCCCCcHHH
Q 045269 5 CTSSLLVNIVR----------GGLLDYEAVAHYLESGHLGGLGLDVAWTEPF-DPND--PILKFQSVLITPHVGGVTEHS 71 (99)
Q Consensus 5 k~~ailIN~aR----------g~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~-~~~~--~l~~~~nvi~TPH~a~~t~~~ 71 (99)
+-.++||||+= =.|=..-++++|+-+|.|..+ -|...|. ...- ..-..|.-++.|.-.|...++
T Consensus 401 ~~~v~LvNTGw~GG~yg~G~Ri~l~~Traiv~a~~~G~l~~~---~~~~~~~fgl~iP~~~~gvp~~~L~P~~~w~d~~~ 477 (508)
T cd00484 401 GAKVWLVNTGWTGGSYGVGKRIPLKYTRAIIDAILSGELNNA---EYEKDPVFNLAIPTSIPGVPSEILNPRNTWADKEA 477 (508)
T ss_pred CCCEEEEecCccCCCCCCCccccHHHHHHHHHHHHcCCccCC---CceECCccCccccccCCCCChhhcCHhhcCCCHHH
Confidence 45689999962 234478899999999999632 1222221 0000 122345558999999988887
Q ss_pred HHHHHHHHH----HHHHHHH
Q 045269 72 YRSTAKVVG----DVALQLH 87 (99)
Q Consensus 72 ~~~~~~~~~----~~l~~~~ 87 (99)
++..++.++ +|+.+|-
T Consensus 478 y~~~a~~La~~F~~nf~~f~ 497 (508)
T cd00484 478 YDETAKKLAKLFIENFKKFA 497 (508)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 766555544 4555553
No 37
>TIGR00224 pckA phosphoenolpyruvate carboxykinase (ATP). Involved in the gluconeogenesis pathway. It converts oxaloacetic acid to phosphoenolpyruvate using ATP. Enzyme is a monomer. The reaction is also catalysed by phosphoenolpyruvate carboxykinase (GTP) (EC 4.1.1.32) using GTP instead of ATP, described in PROSITE:PDOC00421
Probab=75.95 E-value=6.7 Score=31.63 Aligned_cols=81 Identities=16% Similarity=0.168 Sum_probs=51.7
Q ss_pred CCCcEEEEcc------CCcccCHHHHHHHHHhCCcceEEEecCCCCCCCCCC---ccccCCceEeccCCCCCcHHHHHHH
Q 045269 5 CTSSLLVNIV------RGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPND---PILKFQSVLITPHVGGVTEHSYRST 75 (99)
Q Consensus 5 k~~ailIN~a------Rg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~---~l~~~~nvi~TPH~a~~t~~~~~~~ 75 (99)
+-.++||||+ |=.|=..-++++|+-+|.|..+ -|...|.=.-+ ..-..|.=++.|.-.|...++++..
T Consensus 425 ~~~v~LvNTGw~G~G~Ri~l~~TRaiv~ail~G~l~~~---~~~~~~~fgl~iP~~~pgvp~~iL~Pr~~W~d~~~y~~~ 501 (532)
T TIGR00224 425 GAQAYLVNTGWNGTGKRISIKDTRAIIDAILDGSLENA---EMFTLPIFNLAIPTELPGVDTKILDPRNTYASKEQWQEK 501 (532)
T ss_pred CCCEEEEecCcccCCcEecHHHHHHHHHHHhcCCccCC---CceECCccCccccccCCCCChhhcCHhhccCCHHHHHHH
Confidence 4567999996 5556678899999999998733 13333320000 1223445589999999888877554
Q ss_pred H----HHHHHHHHHHHc
Q 045269 76 A----KVVGDVALQLHA 88 (99)
Q Consensus 76 ~----~~~~~~l~~~~~ 88 (99)
+ ..+.+|.++|..
T Consensus 502 a~~La~~F~~Nf~~f~~ 518 (532)
T TIGR00224 502 AETLANLFVDNFKKYAD 518 (532)
T ss_pred HHHHHHHHHHHHHhhcc
Confidence 4 445556666643
No 38
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=74.59 E-value=4.5 Score=29.25 Aligned_cols=33 Identities=9% Similarity=0.104 Sum_probs=28.1
Q ss_pred CCCCCCcEEEEccCCcccCHHHHHHHHHhCCcc
Q 045269 2 SDVCTSSLLVNIVRGGLLDYEAVAHYLESGHLG 34 (99)
Q Consensus 2 ~~mk~~ailIN~aRg~lvd~~aL~~aL~~g~i~ 34 (99)
..+++|.++||+++....+..++.+.++++.+.
T Consensus 81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~ 113 (291)
T TIGR01505 81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGID 113 (291)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCC
Confidence 357899999999999998888999999886543
No 39
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=71.77 E-value=5.6 Score=28.72 Aligned_cols=33 Identities=9% Similarity=0.143 Sum_probs=27.5
Q ss_pred CCCCCCcEEEEccCCcccCHHHHHHHHHhCCcc
Q 045269 2 SDVCTSSLLVNIVRGGLLDYEAVAHYLESGHLG 34 (99)
Q Consensus 2 ~~mk~~ailIN~aRg~lvd~~aL~~aL~~g~i~ 34 (99)
..+++|.++||+++.......++.+.+.+..+.
T Consensus 84 ~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~ 116 (296)
T PRK11559 84 EGAKPGTVVIDMSSIAPLASREIAAALKAKGIE 116 (296)
T ss_pred hcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence 357899999999999988888999998876543
No 40
>COG2306 Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]
Probab=67.31 E-value=4.9 Score=27.90 Aligned_cols=23 Identities=22% Similarity=0.190 Sum_probs=19.0
Q ss_pred EccCCcccCHHHHHHHHHhCCcc
Q 045269 12 NIVRGGLLDYEAVAHYLESGHLG 34 (99)
Q Consensus 12 N~aRg~lvd~~aL~~aL~~g~i~ 34 (99)
--+-.+++|++.|..||++|.|.
T Consensus 116 p~ge~el~DeDEL~~Al~~GlIT 138 (183)
T COG2306 116 PGGEAELLDEDELEDALRYGLIT 138 (183)
T ss_pred cCCCeEEecHHHHHHHHHcCCCC
Confidence 33566899999999999999873
No 41
>cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi
Probab=66.73 E-value=22 Score=25.60 Aligned_cols=35 Identities=17% Similarity=0.122 Sum_probs=26.2
Q ss_pred EEEEccC-----Cccc----CHHHHHHHHHhCCcceEEEecCCCC
Q 045269 9 LLVNIVR-----GGLL----DYEAVAHYLESGHLGGLGLDVAWTE 44 (99)
Q Consensus 9 ilIN~aR-----g~lv----d~~aL~~aL~~g~i~gaalDV~~~E 44 (99)
++||.++ |.-+ ..++..+||+.|= +..-||||+.+
T Consensus 11 YfI~sSHNTYL~g~Ql~~~ss~~~y~~aL~~Gc-RcvElD~Wdg~ 54 (228)
T cd08599 11 YFIFSSHNSYLTGNQLSSRSSTAPIIEALLRGC-RVIELDLWPGG 54 (228)
T ss_pred hEEeccccccccCCccCCccCHHHHHHHHHhCC-CEEEEEeecCC
Confidence 6788877 4332 4578999999984 56999999873
No 42
>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod
Probab=66.32 E-value=15 Score=27.03 Aligned_cols=35 Identities=26% Similarity=0.229 Sum_probs=26.6
Q ss_pred EEEEccC---------CcccCHHHHHHHHHhCCcceEEEecCCCC
Q 045269 9 LLVNIVR---------GGLLDYEAVAHYLESGHLGGLGLDVAWTE 44 (99)
Q Consensus 9 ilIN~aR---------g~lvd~~aL~~aL~~g~i~gaalDV~~~E 44 (99)
++||+|+ .+-=..++..+||+.| .+..-||||+.+
T Consensus 11 YfI~SSHNTYL~g~Ql~g~ss~e~y~~aL~~G-cRcvElD~Wdg~ 54 (257)
T cd08591 11 YFINSSHNTYLTGRQFGGKSSVEMYRQVLLSG-CRCIELDCWDGK 54 (257)
T ss_pred heeecccCccccCCcccCcccHHHHHHHHHhC-CcEEEEEeecCC
Confidence 6777776 2223578999999988 556999999875
No 43
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=64.22 E-value=11 Score=27.53 Aligned_cols=37 Identities=11% Similarity=0.213 Sum_probs=31.6
Q ss_pred CCCCCCcEEEEccCCcccCHHHHHHHHHhCCcceEEEec
Q 045269 2 SDVCTSSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDV 40 (99)
Q Consensus 2 ~~mk~~ailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV 40 (99)
..+++|.++||++.+.......+.+.+.+..+. .+|.
T Consensus 83 ~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~--~lda 119 (296)
T PRK15461 83 EGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS--MMDV 119 (296)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc--EEEc
Confidence 357899999999999999999999999987765 4665
No 44
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=63.17 E-value=2.7 Score=29.13 Aligned_cols=53 Identities=15% Similarity=0.320 Sum_probs=36.8
Q ss_pred EEEEccCCcccCHHHHHHHHHhCCcceEEEecCCCCCCCCCCccccCCceEeccCCC
Q 045269 9 LLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVG 65 (99)
Q Consensus 9 ilIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a 65 (99)
++++++++.+|+++.+ +.|+.+.+.+.+-+.+.. | .....+.-..+++-|.+.
T Consensus 88 v~vp~A~~~~I~~~~~-~~l~~~~v~~~AN~~~~~-~--~~~~~L~~~Gi~~~Pd~~ 140 (200)
T cd01075 88 VFAPCALGGVINDDTI-PQLKAKAIAGAANNQLAD-P--RHGQMLHERGILYAPDYV 140 (200)
T ss_pred EEEecccccccCHHHH-HHcCCCEEEECCcCccCC-H--hHHHHHHHCCCEEeCcee
Confidence 7889999999999988 678888787777766653 1 223344455666666443
No 45
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is
Probab=60.92 E-value=19 Score=26.42 Aligned_cols=78 Identities=15% Similarity=0.080 Sum_probs=46.9
Q ss_pred EEEEcc-----CCccc----CHHHHHHHHHhCCcceEEEecCCC---CCCC-----CCC--c------------cccCC-
Q 045269 9 LLVNIV-----RGGLL----DYEAVAHYLESGHLGGLGLDVAWT---EPFD-----PND--P------------ILKFQ- 56 (99)
Q Consensus 9 ilIN~a-----Rg~lv----d~~aL~~aL~~g~i~gaalDV~~~---Ep~~-----~~~--~------------l~~~~- 56 (99)
++||+| -|.-+ ..++..+||+.| .+..-||||+. ||.- ... + +...+
T Consensus 11 YfI~SSHNTYL~g~Ql~~~ss~~~y~~aL~~G-cRcvElD~wdg~~~eP~v~HG~t~t~~i~f~~v~~~I~~~aF~~s~y 89 (257)
T cd08593 11 YFIASSHNTYLLEDQLKGPSSTEAYIRALKKG-CRCVELDCWDGPDGEPIIYHGHTLTSKILFKDVIQAIREYAFKVSPY 89 (257)
T ss_pred heeecccCccccCCcccCCccHHHHHHHHHhC-CcEEEEEeecCCCCCcEEeeCCccccCcCHHHHHHHHHHHhccCCCC
Confidence 677777 45444 678999999988 56699999986 3430 000 1 11111
Q ss_pred ceEecc--CCCCCcHHHHHHHHHHHHHHHHHHHcCC
Q 045269 57 SVLITP--HVGGVTEHSYRSTAKVVGDVALQLHAGT 90 (99)
Q Consensus 57 nvi~TP--H~a~~t~~~~~~~~~~~~~~l~~~~~g~ 90 (99)
=||+|= |. +.+-+..+++.+.+.+...+--.
T Consensus 90 PvIlslE~Hc---s~~qQ~~~a~~~~~~~g~~L~~~ 122 (257)
T cd08593 90 PVILSLENHC---SVEQQKVMAQHLKSILGDKLLTQ 122 (257)
T ss_pred CEEEEeeccC---CHHHHHHHHHHHHHHHHHHhcCC
Confidence 233333 43 45667777777777777665433
No 46
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=60.87 E-value=11 Score=24.66 Aligned_cols=41 Identities=7% Similarity=0.135 Sum_probs=31.0
Q ss_pred CCCCCCCcEEEEccCCcccCHHHHHHHHHhCCcceEEEecCCC
Q 045269 1 MSDVCTSSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWT 43 (99)
Q Consensus 1 l~~mk~~ailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~ 43 (99)
+++||+|.++|-...-. ....+++.|.++++..+++|....
T Consensus 79 ~~~l~~g~~li~~~~~~--~~~~~~~~l~~~~it~~a~E~ipr 119 (136)
T PF05222_consen 79 LALLKPGQTLIGFLHPA--QNKELLEALAKKGITAFALELIPR 119 (136)
T ss_dssp GGGS-TTCEEEEE--GG--GHHHHHHHHHHCTEEEEEGGGSBS
T ss_pred HhhcCCCcEEEEeeccc--cCHHHHHHHHHCCCEEEEhhhCcC
Confidence 35799999999777666 588899999999999888887643
No 47
>PLN02597 phosphoenolpyruvate carboxykinase [ATP]
Probab=60.31 E-value=29 Score=28.24 Aligned_cols=78 Identities=19% Similarity=0.151 Sum_probs=48.3
Q ss_pred CCCcEEEEcc----------CCcccCHHHHHHHHHhCCcceEEEecCCCCCCCCC-C---ccccCCceEeccCCCCCcHH
Q 045269 5 CTSSLLVNIV----------RGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPN-D---PILKFQSVLITPHVGGVTEH 70 (99)
Q Consensus 5 k~~ailIN~a----------Rg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~-~---~l~~~~nvi~TPH~a~~t~~ 70 (99)
+-.++||||+ |=.|=...++++|+-+|.|..+- |...|. .+ . ..-..|.=++.|--.|...+
T Consensus 438 ~~~vyLvNTGw~GG~yg~G~Ri~l~~TRaiv~ail~G~l~~~~---~~~~p~-Fgl~iP~~~~gVp~~iL~Pr~~w~d~~ 513 (555)
T PLN02597 438 GATAWLVNTGWSGGSYGVGKRMSLAYTRKIIDAIHSGSLLNAE---YVKTPI-FGLEVPTEIEGVPSEILDPENTWSDKK 513 (555)
T ss_pred CCCEEEEecCccCCCCCCcceechHHHHHHHHHHhcCCccCCc---ceECCc-cCccccccCCCCChhhcChhhcCCCHH
Confidence 4568999996 33445778999999999985221 111221 00 0 11233445899999998877
Q ss_pred HHHHH----HHHHHHHHHHH
Q 045269 71 SYRST----AKVVGDVALQL 86 (99)
Q Consensus 71 ~~~~~----~~~~~~~l~~~ 86 (99)
+++.. +..+.+|+.+|
T Consensus 514 ~yd~~a~~La~~F~~Nf~kf 533 (555)
T PLN02597 514 AYDETLNKLAGLFKKNFEVF 533 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 77554 44555666666
No 48
>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh
Probab=59.27 E-value=21 Score=26.18 Aligned_cols=35 Identities=14% Similarity=0.070 Sum_probs=26.4
Q ss_pred EEEEccC-----Ccc----cCHHHHHHHHHhCCcceEEEecCCCC
Q 045269 9 LLVNIVR-----GGL----LDYEAVAHYLESGHLGGLGLDVAWTE 44 (99)
Q Consensus 9 ilIN~aR-----g~l----vd~~aL~~aL~~g~i~gaalDV~~~E 44 (99)
++||+|+ |.- -..++..+||+.| .+..-+|||+.+
T Consensus 11 YfI~SSHNTYL~g~Ql~~~ss~~~y~~aL~~G-cRcvElD~wdg~ 54 (258)
T cd08630 11 YFISSSHNTYLTDSQIGGPSSTEAYVRAFAQG-CRCVELDCWEGP 54 (258)
T ss_pred heeecccCccccCCcccCcccHHHHHHHHHcC-CcEEEEEeecCC
Confidence 6777776 221 3678999999988 566999999863
No 49
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=57.20 E-value=21 Score=26.04 Aligned_cols=37 Identities=14% Similarity=0.017 Sum_probs=31.2
Q ss_pred CCCCCCcEEEEccCCcccCHHHHHHHHHhCCcceEEEec
Q 045269 2 SDVCTSSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDV 40 (99)
Q Consensus 2 ~~mk~~ailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV 40 (99)
..+++|.++|+++.....+...+.+.+++..+. .+|.
T Consensus 82 ~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vda 118 (299)
T PRK12490 82 PLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVDC 118 (299)
T ss_pred ccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEeC
Confidence 457899999999999999999999999887653 4774
No 50
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=56.16 E-value=31 Score=27.73 Aligned_cols=75 Identities=8% Similarity=0.044 Sum_probs=48.6
Q ss_pred CCCCCCcEEEEccCCcccCHHHHHHHHHhCCcceEEEecCCCCCCCCCCccccCCceEeccCCCCCcHHHHHHHHHHHHH
Q 045269 2 SDVCTSSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGGVTEHSYRSTAKVVGD 81 (99)
Q Consensus 2 ~~mk~~ailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~~~~~~~~~~~~~ 81 (99)
++||+|.++|-.-.-. ....|+++|.+.++..+++|....=. ... +++ =++.+++-+-++....+++
T Consensus 81 ~~l~~g~~li~~l~p~--~~~~l~~~l~~~~it~ia~e~vpr~s--raq---~~d------~lssma~IAGy~Av~~aa~ 147 (509)
T PRK09424 81 ALLREGATLVSFIWPA--QNPELLEKLAARGVTVLAMDAVPRIS--RAQ---SLD------ALSSMANIAGYRAVIEAAH 147 (509)
T ss_pred HhcCCCCEEEEEeCcc--cCHHHHHHHHHcCCEEEEeecccccc--cCC---Ccc------cccchhhhhHHHHHHHHHH
Confidence 5799999998876553 35779999999999999999864210 110 111 1222333333667777777
Q ss_pred HHHHHHcC
Q 045269 82 VALQLHAG 89 (99)
Q Consensus 82 ~l~~~~~g 89 (99)
.+.+++.|
T Consensus 148 ~~~~~~~g 155 (509)
T PRK09424 148 EFGRFFTG 155 (509)
T ss_pred HhcccCCC
Confidence 77777764
No 51
>cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=55.84 E-value=80 Score=23.26 Aligned_cols=25 Identities=28% Similarity=0.195 Sum_probs=20.4
Q ss_pred CHHHHHHHHHhCCcceEEEecCCCCC
Q 045269 20 DYEAVAHYLESGHLGGLGLDVAWTEP 45 (99)
Q Consensus 20 d~~aL~~aL~~g~i~gaalDV~~~Ep 45 (99)
..++..+||+.| .+..-+|||+.++
T Consensus 31 s~e~y~~aL~~G-cRcvElD~wdg~~ 55 (261)
T cd08624 31 SPEMYRQVLLSG-CRCVELDCWKGKP 55 (261)
T ss_pred CHHHHHHHHHcC-CcEEEEEecCCCC
Confidence 468899999987 5569999998753
No 52
>cd07027 RNAP_RPB11_like RPB11 subunit of RNA polymerase. The eukaryotic RPB11 subunit of RNA polymerase (RNAP), as well as its archaeal (L subunit) and bacterial (alpha subunit) counterparts, is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. At least three distinct RNAP complexes are found in eukaryotic nuclei: RNAP I, RNAP II, and RNAP III, for the synthesis of ribosomal RNA precursor, mRNA precursor, and 5S and tRNA, respectively. A single distinct RNAP complex is found in prokaryotes and archaea, which may be responsible for the synthesis of all RNAs. The assembly of the two largest eukaryotic RNAP subunits that provide most of the enzyme's catalytic functions depends on the presence of RPB3/RPB11 heterodimer subunits. This is also true for the archaeal (D/
Probab=54.99 E-value=45 Score=20.06 Aligned_cols=56 Identities=9% Similarity=0.147 Sum_probs=39.5
Q ss_pred HHHHH-HhCCcceEEEecCCCCCCCCCCccccCCceEeccCCCCCcHHHHHHHHHHHHHHHHHHH
Q 045269 24 VAHYL-ESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGGVTEHSYRSTAKVVGDVALQLH 87 (99)
Q Consensus 24 L~~aL-~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~~~~~~~~~~~~~~l~~~~ 87 (99)
|...| +...+..|+.++ .||+...+++.+.---+....++..++.+.+.+.+..+.
T Consensus 26 Lr~~L~~~~~V~fAgY~v--------pHPl~~~~~lrI~T~~~~~P~~al~~a~~~l~~~~~~l~ 82 (83)
T cd07027 26 LREELLKDDQVDFARYYI--------KHPVIDKIQIRIQTKSGIKPKDALKRAVNKLSKLYEHLG 82 (83)
T ss_pred HHHHHhcCCCeeEEEEec--------CCCCCCccEEEEEECCCCCHHHHHHHHHHHHHHHHHHhc
Confidence 33333 445666677766 577888888888777556788888888888887776654
No 53
>cd06927 RNAP_L L subunit of Archaeal RNA polymerase. The archaeal L subunit of RNA polymerase (RNAP) is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. A single distinct RNAP complex is found in archaea, which may be responsible for the synthesis of all RNAs. The archaeal RNAP harbors homologues of all eukaryotic RNAP II subunits with two exceptions (RPB8 and RPB9). The 12 archaeal subunits are designated by letters and can be divided into three functional groups that are engaged in: (I) catalysis (A'/A", B'/B" or B); (II) assembly (L, N, D and P); and (III) auxiliary functions (F, E, H and K). The assembly of the two largest archaeal RNAP subunits that provide most of the enzyme's catalytic functions depends on the presence of the archaeal D/L heterodimer.
Probab=53.89 E-value=47 Score=19.97 Aligned_cols=56 Identities=16% Similarity=0.166 Sum_probs=39.2
Q ss_pred HHHHH-HhCCcceEEEecCCCCCCCCCCccccCCceEeccCCCCCcHHHHHHHHHHHHHHHHHHH
Q 045269 24 VAHYL-ESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGGVTEHSYRSTAKVVGDVALQLH 87 (99)
Q Consensus 24 L~~aL-~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~~~~~~~~~~~~~~l~~~~ 87 (99)
|...| +.-++..|+.++ .||+...+++.+.---+....++..++.+.+.+.+..|.
T Consensus 26 Lr~~L~~~~~V~fAgY~v--------pHPl~~~~~lrIqT~~~~~p~~al~~a~~~l~~~~~~~~ 82 (83)
T cd06927 26 LKEELLRDPGVKVASYDI--------EHPLLSNPVLKIKTDGGVDPLEALKEAAKRLIDLCEEFL 82 (83)
T ss_pred HHHHHhcCCCeEEEEeec--------CCCCCCccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 44444 446666677777 577878888877766555677888888888887777664
No 54
>PRK01146 DNA-directed RNA polymerase subunit L; Provisional
Probab=53.76 E-value=48 Score=20.03 Aligned_cols=51 Identities=16% Similarity=0.203 Sum_probs=36.5
Q ss_pred HhCCcceEEEecCCCCCCCCCCccccCCceEeccCCCCCcHHHHHHHHHHHHHHHHHHH
Q 045269 29 ESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGGVTEHSYRSTAKVVGDVALQLH 87 (99)
Q Consensus 29 ~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~~~~~~~~~~~~~~l~~~~ 87 (99)
+.-++..|+.++ .||+...+++.+.-.-+....++..++.+.+.+.+..|.
T Consensus 34 ~~~~V~fAgY~v--------pHPl~~~~~lrIqt~~~~~p~~al~~a~~~L~~~~~~~~ 84 (85)
T PRK01146 34 EDPGVEAASYDI--------DHPLISNPVLKIKTDGGIDPLEALKEAAKRIIDLCDEFL 84 (85)
T ss_pred cCCCeeEEEeec--------CCCCCCccEEEEEECCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 445555577666 578888888887766555677888888888877776664
No 55
>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=53.69 E-value=87 Score=22.99 Aligned_cols=67 Identities=13% Similarity=0.091 Sum_probs=40.3
Q ss_pred CHHHHHHHHHhCCcceEEEecCCCCCCCCCCccccCC--------------------------ceEeccCCCCCcHHHHH
Q 045269 20 DYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQ--------------------------SVLITPHVGGVTEHSYR 73 (99)
Q Consensus 20 d~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~--------------------------nvi~TPH~a~~t~~~~~ 73 (99)
..++..+||+.| .+..-||||+.++. ...|...|- =||+|=.+--.+.+.+.
T Consensus 31 s~e~y~~aL~~G-cRcvElD~wdg~~~-~~eP~v~Hg~t~t~~i~f~dv~~~I~~~aF~~s~yPvIlslE~Hc~s~~qQ~ 108 (258)
T cd08625 31 SVEMYRQVLLTG-CRCIELDCWKGRPP-EEEPFITHGFTMTTEIPFKDVIEAIAESAFKTSPYPVILSFENHVDSAKQQA 108 (258)
T ss_pred CHHHHHHHHHcC-CCEEEEEecCCCCC-CCCCEEeeCCccccCcCHHHHHHHHHHHhccCCCCCEEEEehhcCCCHHHHH
Confidence 467899999987 56799999987531 122332221 13333322222456677
Q ss_pred HHHHHHHHHHHHHHc
Q 045269 74 STAKVVGDVALQLHA 88 (99)
Q Consensus 74 ~~~~~~~~~l~~~~~ 88 (99)
.+++.+.+.+...+-
T Consensus 109 ~ma~~l~~ilGd~L~ 123 (258)
T cd08625 109 KMAEYCRSIFGDALL 123 (258)
T ss_pred HHHHHHHHHHHHHhc
Confidence 777777777776664
No 56
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=53.60 E-value=4 Score=27.89 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=18.4
Q ss_pred CCCCCCCcEEEEccCC-cccCHHHHHH
Q 045269 1 MSDVCTSSLLVNIVRG-GLLDYEAVAH 26 (99)
Q Consensus 1 l~~mk~~ailIN~aRg-~lvd~~aL~~ 26 (99)
|++||+|+++.|++.- .=||-+.|.+
T Consensus 97 ~~~mkdgail~n~Gh~d~Eid~~~L~~ 123 (162)
T PF00670_consen 97 FRQMKDGAILANAGHFDVEIDVDALEA 123 (162)
T ss_dssp HHHS-TTEEEEESSSSTTSBTHHHHHT
T ss_pred HHHhcCCeEEeccCcCceeEeeccccc
Confidence 4679999999999864 4467775544
No 57
>PTZ00311 phosphoenolpyruvate carboxykinase; Provisional
Probab=53.55 E-value=53 Score=26.85 Aligned_cols=79 Identities=15% Similarity=0.026 Sum_probs=47.8
Q ss_pred CCCcEEEEccCC-----------cccCHHHHHHHHHhCCcceEEEecCCCCCC-CCCC--ccccCCceEeccCCCCCcHH
Q 045269 5 CTSSLLVNIVRG-----------GLLDYEAVAHYLESGHLGGLGLDVAWTEPF-DPND--PILKFQSVLITPHVGGVTEH 70 (99)
Q Consensus 5 k~~ailIN~aRg-----------~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~-~~~~--~l~~~~nvi~TPH~a~~t~~ 70 (99)
+-.++||||+=- .|=..-++++|+-+|.|..+ -|...|. ...- ..-..|.=++.|--.|...+
T Consensus 448 ~~~v~LvNTGw~GG~yg~~G~Ri~l~~TRaiv~ail~G~l~~~---~~~~~p~Fgl~iP~~~pgVp~eiL~Pr~~w~d~~ 524 (561)
T PTZ00311 448 NTRVWLLNTGWIGGSYGSGGKRMPLKYTRAIIDAIHDGELKKA---EYEKFPIFGLQIPKSCAGVPSELLDPRNAWKDKA 524 (561)
T ss_pred CCCEEEeecCccCCcCCCCCcccCHHHHHHHHHHHhcCCccCC---ceeECCccCccccccCCCCChhhcCHhhcCCCHH
Confidence 456899999622 12268899999999998522 1222221 0000 11233455899999998888
Q ss_pred HHHHHHHH----HHHHHHHH
Q 045269 71 SYRSTAKV----VGDVALQL 86 (99)
Q Consensus 71 ~~~~~~~~----~~~~l~~~ 86 (99)
++++.++. +.+|+.+|
T Consensus 525 ayd~~a~~La~~F~~nf~~f 544 (561)
T PTZ00311 525 AFDKQLKELAAKFQKNFKKY 544 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 87655544 44566666
No 58
>COG1866 PckA Phosphoenolpyruvate carboxykinase (ATP) [Energy production and conversion]
Probab=52.01 E-value=53 Score=26.44 Aligned_cols=81 Identities=15% Similarity=0.068 Sum_probs=48.8
Q ss_pred CCCCcEEEEcc----------CCcccCHHHHHHHHHhCCcceEEEec---CCCCCCCCCCccccCCceEeccCCCCCcHH
Q 045269 4 VCTSSLLVNIV----------RGGLLDYEAVAHYLESGHLGGLGLDV---AWTEPFDPNDPILKFQSVLITPHVGGVTEH 70 (99)
Q Consensus 4 mk~~ailIN~a----------Rg~lvd~~aL~~aL~~g~i~gaalDV---~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~~ 70 (99)
..-.++||||+ |=.|=+..+|+.|+.+|.+..+-.-. |.-+ .|. .+=..+-.|+-|.-.+....
T Consensus 417 ~~~~vyLvNTGWtGg~yg~GkRi~ik~TRall~a~l~G~l~nae~~~d~~f~l~-iP~--~~pGV~~~ilnP~~tw~dk~ 493 (529)
T COG1866 417 HGANVYLVNTGWTGGAYGTGKRIPIKYTRALLDAILDGSLENAETKTDPIFGLA-IPV--ALPGVDSDILNPRNTWADKA 493 (529)
T ss_pred cCCcEEEEecCccCCCCCCccccCHHHHHHHHHHHhccccccceeeeccccccc-ccc--cCCCCCccccChhhhhccHH
Confidence 44568999996 44577899999999998886432211 1000 011 12234556888888887777
Q ss_pred HHHHH----HHHHHHHHHHHH
Q 045269 71 SYRST----AKVVGDVALQLH 87 (99)
Q Consensus 71 ~~~~~----~~~~~~~l~~~~ 87 (99)
.+... +.++++|+..|-
T Consensus 494 ~y~~~a~~La~~F~~NF~k~~ 514 (529)
T COG1866 494 AYDEKARRLAKLFIENFKKYE 514 (529)
T ss_pred HHHHHHHHHHHHHHHhhhhcc
Confidence 66544 444455555543
No 59
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=51.57 E-value=33 Score=25.23 Aligned_cols=34 Identities=29% Similarity=0.113 Sum_probs=25.9
Q ss_pred EEEEcc-----CCccc----CHHHHHHHHHhCCcceEEEecCCC
Q 045269 9 LLVNIV-----RGGLL----DYEAVAHYLESGHLGGLGLDVAWT 43 (99)
Q Consensus 9 ilIN~a-----Rg~lv----d~~aL~~aL~~g~i~gaalDV~~~ 43 (99)
++||+| -|.-+ ..++..+||+.| .+..-+|||+.
T Consensus 11 YfI~SSHNTYL~g~Ql~~~ss~e~y~~aL~~G-cRcvElD~wdg 53 (258)
T cd08629 11 YLVSSSHNTYLLEDQLTGPSSTEAYIRALCKG-CRCLELDCWDG 53 (258)
T ss_pred heeeccccccccCCccCCccCHHHHHHHHHhC-CcEEEEEeecC
Confidence 567776 34333 688999999988 55699999986
No 60
>TIGR03035 trp_arylform arylformamidase. One of several pathways of tryptophan degradation is as follows: tryptophan 2,3-dioxygenase (1.13.11.11) uses 02 to convert Trp to L-formylkynurenine. Arylformamidase (3.5.1.9) hydrolyzes the product to L-kynurenine and formate. Kynureninase (3.7.1.3) hydrolyzes L-kynurenine to anthranilate plus alanine. Members of the seed alignment for this model are bacterial predicted metal-dependent hydrolases. All are supported as arylformamidase (3.5.1.9) by an operon structure in which kynureninase and/or tryptophan 2,3-dioxygenase genes are adjacent. The members from Bacillus cereus, Pseudomonas aeruginosa and Ralstonia metallidurans were characterized. An example from Pseudomonas fluorescens is given the gene symbol qbsH instead of kynB because of its role in quinolobactin biosynthesis, which begins with tryptophan. All members of this family should be arylformamidase (3.5.1.9).
Probab=51.51 E-value=47 Score=23.08 Aligned_cols=39 Identities=13% Similarity=0.188 Sum_probs=29.3
Q ss_pred CcEEEEccC----------CcccCHHHHHHHHHhCCcceEEEecCCCCCC
Q 045269 7 SSLLVNIVR----------GGLLDYEAVAHYLESGHLGGLGLDVAWTEPF 46 (99)
Q Consensus 7 ~ailIN~aR----------g~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~ 46 (99)
..++++|++ ..=+.+++ .+.|.+..+.+.++|.+..++.
T Consensus 102 d~vl~~Tg~~~~~~~y~~~~Pgls~ea-a~~L~e~~i~~iG~D~~s~d~~ 150 (206)
T TIGR03035 102 PRVLLRTYLPAPANAWPDDFPAVAPDT-IELLAEKGVRLIGIDTPSVDPL 150 (206)
T ss_pred CEEEEECCCCCCccccCCCCCeeCHHH-HHHHHHCCCeEEEECCCccCCC
Confidence 469999984 12344444 7888899999999999987764
No 61
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=50.42 E-value=6 Score=29.72 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=35.5
Q ss_pred CCCCCCCcEEEEccCCcccCHHHHHHHHHhCCcceEEEec
Q 045269 1 MSDVCTSSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDV 40 (99)
Q Consensus 1 l~~mk~~ailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV 40 (99)
|+.|+++..+++...|+++++-.|-..+.+--|++.++|-
T Consensus 133 l~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~ 172 (305)
T PF07433_consen 133 LDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDG 172 (305)
T ss_pred hhhcCCceEEEecCCCceeeeeecCccccccceeeEEecC
Confidence 4679999999999999999999998888888888888874
No 62
>PLN02230 phosphoinositide phospholipase C 4
Probab=49.18 E-value=1.3e+02 Score=24.78 Aligned_cols=75 Identities=15% Similarity=0.072 Sum_probs=46.0
Q ss_pred EEEEccCC---------cccCHHHHHHHHHhCCcceEEEecCCCC---CCCC-----CC--ccc------------c--C
Q 045269 9 LLVNIVRG---------GLLDYEAVAHYLESGHLGGLGLDVAWTE---PFDP-----ND--PIL------------K--F 55 (99)
Q Consensus 9 ilIN~aRg---------~lvd~~aL~~aL~~g~i~gaalDV~~~E---p~~~-----~~--~l~------------~--~ 55 (99)
++||+|+= +--..++..+||+.| .+..-||+|+.+ |.-. .. +|. . .
T Consensus 124 YfI~sSHNTYL~g~Ql~~~ss~e~y~~aL~~G-cRcvElD~wdg~~~ep~v~HG~t~t~~i~f~~v~~~I~~~aF~~s~y 202 (598)
T PLN02230 124 YFIFTGHNSYLTGNQLSSNCSELPIADALRRG-VRVVELDLWPRGTDDVCVKHGRTLTKEVKLGKCLDSIKANAFAISKY 202 (598)
T ss_pred heeecccCccccCCcccCccCHHHHHHHHHcC-CcEEEEeccCCCCCCcEEeeCCCCcCCcCHHHHHHHHHHhccCCCCC
Confidence 68888863 223567899999988 556999999753 4200 00 110 0 1
Q ss_pred CceEe--ccCCCCCcHHHHHHHHHHHHHHHHHHHc
Q 045269 56 QSVLI--TPHVGGVTEHSYRSTAKVVGDVALQLHA 88 (99)
Q Consensus 56 ~nvi~--TPH~a~~t~~~~~~~~~~~~~~l~~~~~ 88 (99)
| ||+ -.| .+.+.+..+++.+.+.+-..+-
T Consensus 203 P-vIlslE~h---cs~~~Q~~~a~~~~~~~Gd~L~ 233 (598)
T PLN02230 203 P-VIITLEDH---LTPKLQFKVAKMITQTFGDMLY 233 (598)
T ss_pred C-eEEEeccC---CCHHHHHHHHHHHHHHHhhhhc
Confidence 2 333 346 3567777788877777776553
No 63
>COG1761 RPB11 DNA-directed RNA polymerase, subunit L [Transcription]
Probab=47.68 E-value=69 Score=20.11 Aligned_cols=51 Identities=10% Similarity=0.111 Sum_probs=37.0
Q ss_pred hCCcceEEEecCCCCCCCCCCccccCCceEeccCCCCCcHHHHHHHHHHHHHHHHHHHc
Q 045269 30 SGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGGVTEHSYRSTAKVVGDVALQLHA 88 (99)
Q Consensus 30 ~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~~~~~~~~~~~~~~l~~~~~ 88 (99)
.-++..|+.++ .||+...|++-+.---+-.+.++..+..+.+.+.+..+..
T Consensus 39 d~~V~~a~Y~i--------~HP~~~~~~i~Ikt~~~~dp~~aL~~A~~~i~~~~~~l~~ 89 (99)
T COG1761 39 DEDVEFAAYSI--------PHPLIDNPKIRIKTKGGVDPKEALKRAARKILKDLEELLD 89 (99)
T ss_pred CCCeeEEEEeC--------CCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677776 6788888988776654446788888888888877776654
No 64
>COG0063 Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=47.58 E-value=34 Score=25.35 Aligned_cols=55 Identities=31% Similarity=0.251 Sum_probs=27.6
Q ss_pred EEEccCCcccCH---HHHHHHHHhCCcceEEEecCCCCCCCCCCccccCCceEeccCCC
Q 045269 10 LVNIVRGGLLDY---EAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVG 65 (99)
Q Consensus 10 lIN~aRg~lvd~---~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a 65 (99)
.|.++-|--.++ +++.+.|++.. .-+.+|---=.-+.....+.....+|+|||-+
T Consensus 104 avviGpGlG~~~~~~~~~~~~l~~~~-~p~ViDADaL~~la~~~~~~~~~~~VlTPH~g 161 (284)
T COG0063 104 AVVIGPGLGRDAEGQEALKELLSSDL-KPLVLDADALNLLAELPDLLDERKVVLTPHPG 161 (284)
T ss_pred EEEECCCCCCCHHHHHHHHHHHhccC-CCEEEeCcHHHHHHhCcccccCCcEEECCCHH
Confidence 444555555565 44555555543 45777763211111112223334499999965
No 65
>PRK08733 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=45.80 E-value=76 Score=23.23 Aligned_cols=22 Identities=18% Similarity=0.067 Sum_probs=19.0
Q ss_pred HHHHHHHHHhCCcceEEEecCC
Q 045269 21 YEAVAHYLESGHLGGLGLDVAW 42 (99)
Q Consensus 21 ~~aL~~aL~~g~i~gaalDV~~ 42 (99)
..+++++|++|.+.|...|-..
T Consensus 184 ~r~~~kaLk~g~~v~il~Dq~~ 205 (306)
T PRK08733 184 LRATIKHLKRGGFLWYAPDQDM 205 (306)
T ss_pred HHHHHHHHhCCCeEEEeCCCCC
Confidence 5778999999999999999753
No 66
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=44.06 E-value=41 Score=24.52 Aligned_cols=37 Identities=14% Similarity=0.031 Sum_probs=30.7
Q ss_pred CCCCCCcEEEEccCCcccCHHHHHHHHHhCCcceEEEec
Q 045269 2 SDVCTSSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDV 40 (99)
Q Consensus 2 ~~mk~~ailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV 40 (99)
+.+++|.++|+++.+..-....+.+.+++..+. .+|.
T Consensus 82 ~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~~da 118 (301)
T PRK09599 82 PLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH--FVDV 118 (301)
T ss_pred hhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCE--EEeC
Confidence 357889999999999999999999999887765 4575
No 67
>cd08589 PI-PLCc_SaPLC1_like Catalytic domain of Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1-like proteins. This subfamily corresponds to the catalytic domain present in Streptomyces antibioticus phosphatidylinositol-specific phospholipase C1 (SaPLC1) and similar proteins. The typical bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) catalyzes Ca2+-independent hydrolysis of the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). The catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. In contrast, SaPLC1 is the first known natural Ca2+-dependent bacterial PI-PLC. It is more closely related to the eukaryotic PI-PLCs rather than the typical bacterial PI-PLCs. It participates in PI metabolism to generate myo-inositol-1-phosphate and myo-inositol-1:2-cy
Probab=43.88 E-value=74 Score=24.17 Aligned_cols=70 Identities=19% Similarity=0.176 Sum_probs=41.1
Q ss_pred HHHHHHHHhCCcceEEEecCCCCC-------C---CCCCccccCCceEeccCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 045269 22 EAVAHYLESGHLGGLGLDVAWTEP-------F---DPNDPILKFQSVLITPHVGGVTEHSYRSTAKVVGDVALQLHAGTP 91 (99)
Q Consensus 22 ~aL~~aL~~g~i~gaalDV~~~Ep-------~---~~~~~l~~~~nvi~TPH~a~~t~~~~~~~~~~~~~~l~~~~~g~~ 91 (99)
..|.++|+.| ++..-||||.... . +...+.+..|.+-+ -|+...-..+...-...+++.|+.|+...|
T Consensus 48 ~~i~~QLd~G-vR~LELDv~~d~~gg~~a~P~~~~~~~~~~~~~~g~~V-~H~~~~d~~t~C~~l~~cL~~Ik~W~~anP 125 (324)
T cd08589 48 PPLADQLDSG-VRQLELDVWADPEGGRYAHPLGLAPDDAAVMKKPGWKV-SHIPDLDNRNNCVTLEDCLDDVRAWSDAHP 125 (324)
T ss_pred ccHHHHHhhC-cceEEEEEeecCCcccccccccccccccccccCCCeEE-EcCCCcCCCCChhhHHHHHHHHHHHHHhCC
Confidence 4789999998 8899999995431 1 12223344455533 354332111112244678889999987655
Q ss_pred CC
Q 045269 92 LT 93 (99)
Q Consensus 92 ~~ 93 (99)
-.
T Consensus 126 ~h 127 (324)
T cd08589 126 GH 127 (324)
T ss_pred Cc
Confidence 43
No 68
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=43.25 E-value=55 Score=23.63 Aligned_cols=77 Identities=12% Similarity=0.101 Sum_probs=47.3
Q ss_pred EEEEccC-----Ccc----cCHHHHHHHHHhCCcceEEEecCCCC---CCC-----CCC--c------------ccc-CC
Q 045269 9 LLVNIVR-----GGL----LDYEAVAHYLESGHLGGLGLDVAWTE---PFD-----PND--P------------ILK-FQ 56 (99)
Q Consensus 9 ilIN~aR-----g~l----vd~~aL~~aL~~g~i~gaalDV~~~E---p~~-----~~~--~------------l~~-~~ 56 (99)
++||.|+ |.- =..++..+||..| .+..-+|||+.+ |.- ..+ + +.. -=
T Consensus 11 YfI~SSHNTYL~g~Ql~~~ss~e~Y~~aL~~G-cRcvElD~wdg~~~ePvV~HG~tlts~i~f~dv~~aI~~~AF~~s~y 89 (227)
T cd08594 11 YFIASSHNTYLTGDQLLSQSRVDMYARVLQAG-CRCVEVDCWDGPDGEPVVHHGYTLTSKILFRDVIETINKYAFIKNEY 89 (227)
T ss_pred heeecccCccccCCcccCcccHHHHHHHHHhC-CcEEEEEeecCCCCCcEEeeCCCcccCcCHHHHHHHHHHhhccCCCC
Confidence 6777776 222 2467899999888 556999999863 430 000 1 111 11
Q ss_pred ceEeccCCCCCcHHHHHHHHHHHHHHHHHHH
Q 045269 57 SVLITPHVGGVTEHSYRSTAKVVGDVALQLH 87 (99)
Q Consensus 57 nvi~TPH~a~~t~~~~~~~~~~~~~~l~~~~ 87 (99)
=||+|...- .+.+-+..+++.+.+.+...+
T Consensus 90 PvIlSlE~H-cs~~qQ~~ma~~l~~~lGd~L 119 (227)
T cd08594 90 PVILSIENH-CSVQQQKKMAQYLKEILGDKL 119 (227)
T ss_pred CEEEEeccc-CCHHHHHHHHHHHHHHHhHHh
Confidence 356665332 256777888888888777766
No 69
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=41.76 E-value=12 Score=26.57 Aligned_cols=30 Identities=33% Similarity=0.522 Sum_probs=20.1
Q ss_pred EEEEccCCcccCH-----------------HHHHHHHHhCCcceEEE
Q 045269 9 LLVNIVRGGLLDY-----------------EAVAHYLESGHLGGLGL 38 (99)
Q Consensus 9 ilIN~aRg~lvd~-----------------~aL~~aL~~g~i~gaal 38 (99)
-=||++||-++|. +.+++.+.+.|-+|+|+
T Consensus 159 QRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAl 205 (235)
T COG4778 159 QRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAAL 205 (235)
T ss_pred eehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceE
Confidence 3489999988875 34556666666666554
No 70
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=41.55 E-value=34 Score=27.53 Aligned_cols=75 Identities=9% Similarity=0.069 Sum_probs=49.4
Q ss_pred CCCCCCcEEEEccCCcccCHHHHHHHHHhCCcceEEEecCCCCCCCCCCccccCCceEeccCCCCCcHHHHHHHHHHHHH
Q 045269 2 SDVCTSSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGGVTEHSYRSTAKVVGD 81 (99)
Q Consensus 2 ~~mk~~ailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~~~~~~~~~~~~~ 81 (99)
++||+|.++|-...-.. ..+|+++|.+.++...++|.... ++.. .+ .+=.+.+++-+-.+....+++
T Consensus 80 ~~l~~g~tli~~l~p~~--n~~ll~~l~~k~it~ia~E~vpr--isra---q~------~d~lssma~iAGy~Avi~Aa~ 146 (511)
T TIGR00561 80 AELPAGKALVSFIWPAQ--NPELMEKLAAKNITVLAMDAVPR--ISRA---QK------LDALSSMANIAGYRAIIEAAH 146 (511)
T ss_pred HhcCCCCEEEEEcCccC--CHHHHHHHHHcCCEEEEeecccc--cccC---Cc------cCcchhhHHHHHHHHHHHHHH
Confidence 57999999998876433 57899999999999999997531 1000 00 122233445555677777777
Q ss_pred HHHHHHcC
Q 045269 82 VALQLHAG 89 (99)
Q Consensus 82 ~l~~~~~g 89 (99)
.+.+++.|
T Consensus 147 ~lgr~~~g 154 (511)
T TIGR00561 147 EFGRFFTG 154 (511)
T ss_pred HhhhhcCC
Confidence 77777764
No 71
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=40.59 E-value=12 Score=25.99 Aligned_cols=27 Identities=4% Similarity=0.073 Sum_probs=23.1
Q ss_pred CCCCcEEEEccCCcccCHHHHHHHHHh
Q 045269 4 VCTSSLLVNIVRGGLLDYEAVAHYLES 30 (99)
Q Consensus 4 mk~~ailIN~aRg~lvd~~aL~~aL~~ 30 (99)
|...++.+|+.||.+|+.++|..+|+.
T Consensus 175 l~~~p~~~~v~~~~~v~~~~l~~~l~~ 201 (213)
T PRK05472 175 LNFAPVRLSVPEDVIVRNVDLTVELQT 201 (213)
T ss_pred eecCceeecCCCCCEEEEechHHHHHH
Confidence 445678899999999999999999865
No 72
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=40.02 E-value=6 Score=28.44 Aligned_cols=57 Identities=21% Similarity=0.244 Sum_probs=27.6
Q ss_pred CcEEEEccCCcccCHHHHHHHHHhCCcceEEEecCCCCCCCCCCccccCCceEeccCCC
Q 045269 7 SSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVG 65 (99)
Q Consensus 7 ~ailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a 65 (99)
++++|=-+=|.-=....+++.+.+...- ..+|---=.-+. .++.....++|+|||.+
T Consensus 69 ~av~iGPGlg~~~~~~~~~~~~~~~~~p-~VlDADaL~~l~-~~~~~~~~~~IlTPH~g 125 (242)
T PF01256_consen 69 DAVVIGPGLGRDEETEELLEELLESDKP-LVLDADALNLLA-ENPKKRNAPVILTPHPG 125 (242)
T ss_dssp SEEEE-TT-SSSHHHHHHHHHHHHHCST-EEEECHHHHCHH-HCCCCSSSCEEEE-BHH
T ss_pred CEEEeecCCCCchhhHHHHHHHHhhcce-EEEehHHHHHHH-hccccCCCCEEECCCHH
Confidence 4455554444433334566665544433 888862111100 01134557999999976
No 73
>PF15366 DUF4597: Domain of unknown function (DUF4597)
Probab=39.80 E-value=26 Score=19.92 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=12.8
Q ss_pred CCccccCCceEeccCCC
Q 045269 49 NDPILKFQSVLITPHVG 65 (99)
Q Consensus 49 ~~~l~~~~nvi~TPH~a 65 (99)
...-+..||+|+||-.-
T Consensus 16 ~dKhLdVPnIIiTPPTP 32 (62)
T PF15366_consen 16 SDKHLDVPNIIITPPTP 32 (62)
T ss_pred cccccCCCceEecCCCC
Confidence 34556789999999754
No 74
>cd01919 PEPCK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).
Probab=39.67 E-value=65 Score=26.01 Aligned_cols=80 Identities=13% Similarity=-0.021 Sum_probs=45.6
Q ss_pred CCCCcEEEEccCC---------cccCHHHHHHHHHhCCcceEEEecCCCCCC-----CCCCccccCCceEeccCCCCCcH
Q 045269 4 VCTSSLLVNIVRG---------GLLDYEAVAHYLESGHLGGLGLDVAWTEPF-----DPNDPILKFQSVLITPHVGGVTE 69 (99)
Q Consensus 4 mk~~ailIN~aRg---------~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~-----~~~~~l~~~~nvi~TPH~a~~t~ 69 (99)
-++..++||+++- ++-+..++++++.+|.+..+- +...|. |..-| ..|-=++.|--.+...
T Consensus 408 ~~~~i~lvNtg~~gg~G~g~r~~~~~tr~il~~i~~g~~~~~~---~~~~pif~~~iP~~~~--gv~~~~l~p~~~w~~~ 482 (515)
T cd01919 408 PLPKIFLVNTGRKGKEGKFKRPGFGETRAIIDAIFNGILDKAE---TKLTPIFNLYIPKALN--LVGLGHLNPRNMMELF 482 (515)
T ss_pred cCCcEEEEeccccCCCCCcccCCHHHHHHHHHHHHhCCcCCCC---eEEccccCEEeCcccC--CCCcccCCHHHhhhhh
Confidence 4577899999653 566899999999999986321 112221 12111 1122246776555444
Q ss_pred HHH----HHHHHHHHHHHHHHHc
Q 045269 70 HSY----RSTAKVVGDVALQLHA 88 (99)
Q Consensus 70 ~~~----~~~~~~~~~~l~~~~~ 88 (99)
+.. .+.+..+.+|+..|..
T Consensus 483 ~~~~~~~~~l~~~f~~nf~~~~~ 505 (515)
T cd01919 483 SQSKEFWDKLVEDFEKYFVDQVN 505 (515)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcC
Confidence 443 4445555556665543
No 75
>cd01318 DHOase_IIb Dihydroorotase (DHOase), subgroup IIb; DHOases catalyze the reversible interconversion of carbamoyl aspartate to dihydroorotate, a key reaction in pyrimidine biosynthesis. This group contains the archeal members of the DHOase family.
Probab=39.39 E-value=28 Score=26.22 Aligned_cols=26 Identities=23% Similarity=0.174 Sum_probs=22.3
Q ss_pred ccCHHHHHHHHHhCCcceEEEecCCC
Q 045269 18 LLDYEAVAHYLESGHLGGLGLDVAWT 43 (99)
Q Consensus 18 lvd~~aL~~aL~~g~i~gaalDV~~~ 43 (99)
--|.++|.++|++|.+...+.|-...
T Consensus 227 ~~d~~aL~~~l~~G~id~i~SDh~P~ 252 (361)
T cd01318 227 REDRKALLQALADGRIDVIASDHAPH 252 (361)
T ss_pred HHHHHHHHHHHhCCCCCEEeeCCCCC
Confidence 36889999999999999999996543
No 76
>TIGR00143 hypF [NiFe] hydrogenase maturation protein HypF. A previously described regulatory effect of HypF mutatation is attributable to loss of activity of a regulatory hydrogenase. A zinc finger-like region CXXCX(18)CXXCX(24)CXXCX(18)CXXC region further supported the regulatory hypothesis. However, more recent work (PUBMED:11375153) shows the direct effect is on the activity of expressed hydrogenases with nickel/iron centers, rather than on expression.
Probab=39.19 E-value=59 Score=27.19 Aligned_cols=36 Identities=11% Similarity=0.028 Sum_probs=28.2
Q ss_pred CCceEeccCCCCCcHHHHHHHHHHHHHHHHHHHcCC
Q 045269 55 FQSVLITPHVGGVTEHSYRSTAKVVGDVALQLHAGT 90 (99)
Q Consensus 55 ~~nvi~TPH~a~~t~~~~~~~~~~~~~~l~~~~~g~ 90 (99)
-.++++|||+|-.......+..+..++.+.++++-+
T Consensus 380 ~~~~~~S~~iGDl~~~~~~~~~~~~~~~~~~l~~~~ 415 (711)
T TIGR00143 380 GGQAYLSQHIGDLSVYETYKFFKEALNFFLRIYDFE 415 (711)
T ss_pred CCEEEEcCcccCcCCHHHHHHHHHHHHHHHHHHCCC
Confidence 458999999998766666677778888888877654
No 77
>cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins. This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki
Probab=38.22 E-value=55 Score=23.56 Aligned_cols=24 Identities=25% Similarity=0.062 Sum_probs=19.8
Q ss_pred CHHHHHHHHHhCCcceEEEecCCCC
Q 045269 20 DYEAVAHYLESGHLGGLGLDVAWTE 44 (99)
Q Consensus 20 d~~aL~~aL~~g~i~gaalDV~~~E 44 (99)
..++..+||+.| .+..-||||+.+
T Consensus 31 s~~~y~~aL~~G-cRcvElD~wdg~ 54 (226)
T cd08558 31 SVEAYIRALLRG-CRCVELDCWDGP 54 (226)
T ss_pred CHHHHHHHHHhC-CcEEEEEeecCC
Confidence 568999999988 556999999873
No 78
>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=37.94 E-value=55 Score=24.05 Aligned_cols=24 Identities=21% Similarity=0.101 Sum_probs=19.9
Q ss_pred CHHHHHHHHHhCCcceEEEecCCCC
Q 045269 20 DYEAVAHYLESGHLGGLGLDVAWTE 44 (99)
Q Consensus 20 d~~aL~~aL~~g~i~gaalDV~~~E 44 (99)
..++..+||+.| .+..-||||+..
T Consensus 31 s~~~y~~aL~~G-cRcvElD~wdg~ 54 (257)
T cd08626 31 SVEMYRQVLLAG-CRCIELDCWDGK 54 (257)
T ss_pred cHHHHHHHHHcC-CcEEEEEecCCC
Confidence 478899999988 567999999864
No 79
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=37.30 E-value=53 Score=24.43 Aligned_cols=37 Identities=14% Similarity=0.108 Sum_probs=32.0
Q ss_pred CCCCCCcEEEEccCCcccCHHHHHHHHHhCCcceEEEec
Q 045269 2 SDVCTSSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDV 40 (99)
Q Consensus 2 ~~mk~~ailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV 40 (99)
+.||+|.++|+.+--+.-....+.+.++++-+. .+|.
T Consensus 83 ~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~--~lDA 119 (286)
T COG2084 83 EGLKPGAIVIDMSTISPETARELAAALAAKGLE--FLDA 119 (286)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCc--EEec
Confidence 568999999999999999999999999998764 6664
No 80
>PLN02228 Phosphoinositide phospholipase C
Probab=36.64 E-value=80 Score=25.85 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=27.6
Q ss_pred EEEEccC-----Cccc----CHHHHHHHHHhCCcceEEEecCCCC
Q 045269 9 LLVNIVR-----GGLL----DYEAVAHYLESGHLGGLGLDVAWTE 44 (99)
Q Consensus 9 ilIN~aR-----g~lv----d~~aL~~aL~~g~i~gaalDV~~~E 44 (99)
++||.|+ |.-+ ..++..+||+.| .+..-||+|+.+
T Consensus 115 YfI~SSHNTYL~g~Ql~~~ss~e~y~~aL~~G-cRcvElD~wdg~ 158 (567)
T PLN02228 115 YFVYTGHNSYLTGNQVNSRSSVEPIVQALRKG-VKVIELDLWPNP 158 (567)
T ss_pred heeecccCccccCCcccCccCHHHHHHHHHcC-CcEEEEEeccCC
Confidence 7888887 4443 578999999987 557999999863
No 81
>PF03991 Prion_octapep: Copper binding octapeptide repeat; InterPro: IPR020949 Prion protein (PrP-c) [, , ] is a small glycoprotein found in high quantity in the brain of animals infected with certain degenerative neurological diseases, such as sheep scrapie and bovine spongiform encephalopathy (BSE), and the human dementias Creutzfeldt-Jacob disease (CJD) and Gerstmann-Straussler syndrome (GSS). PrP-c is encoded in the host genome and is expressed both in normal and infected cells. During infection, however, the PrP-c molecule become altered (conformationally rather than at the amino acid level) to an abnormal isoform, PrP-sc. In detergent-treated brain extracts from infected individuals, fibrils composed of polymers of PrP-sc, namely scrapie-associated fibrils or prion rods, can be evidenced by electron microscopy. The precise function of the normal PrP isoform in healthy individuals remains unknown. Several results, mainly obtained in transgenic animals, indicate that PrP-c might play a role in long-term potentiation, in sleep physiology, in oxidative burst compensation (PrP can fix four Cu2+ through its octarepeat domain), in interactions with the extracellular matrix (PrP-c can bind to the precursor of the laminin receptor, LRP), in apoptosis and in signal transduction (costimulation of PrP-c induces a modulation of Fyn kinase phosphorylation) []. The normal isoform, PrP-c, is anchored at the cell membrane, in rafts, through a glycosyl phosphatidyl inositol (GPI); its half-life at the cell surface is 5 h, after which the protein is internalised through a caveolae-dependent mechanism and degraded in the endolysosome compartment. Conversion between PrP-c and PrP-sc occurs likely during the internalisation process. This repeat is found at the amino terminus of mammalian prion proteins. It has been shown to bind to copper [].
Probab=36.52 E-value=19 Score=12.42 Aligned_cols=6 Identities=67% Similarity=1.160 Sum_probs=3.7
Q ss_pred cCCCCC
Q 045269 62 PHVGGV 67 (99)
Q Consensus 62 PH~a~~ 67 (99)
||-+++
T Consensus 1 phgG~W 6 (8)
T PF03991_consen 1 PHGGGW 6 (8)
T ss_pred CCCCcC
Confidence 676654
No 82
>PRK04323 hypothetical protein; Provisional
Probab=36.41 E-value=49 Score=20.52 Aligned_cols=54 Identities=15% Similarity=0.268 Sum_probs=33.5
Q ss_pred cEEEEccCCcccC-----------HHHHHHHHHhCCcceEEEecCCCCCCCCCCccccCCc-eEeccC
Q 045269 8 SLLVNIVRGGLLD-----------YEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQS-VLITPH 63 (99)
Q Consensus 8 ailIN~aRg~lvd-----------~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~n-vi~TPH 63 (99)
.-|||.+.|-+|. -....+.++..+-.|..+|..+..-. .+-+..-.+ |++||=
T Consensus 3 ~~~inIGfgn~V~~~rIIAIv~~~Sap~Kr~~~~ak~~g~lidaT~Grkt--rsvIItds~hV~LSai 68 (91)
T PRK04323 3 IKLINIGFGNIVSANRIIAIVSPESAPIKRIIQEARERGMLIDATYGRKT--RAVIITDSGHVILSAI 68 (91)
T ss_pred ceEEEecCCcEEEcccEEEEECCCcHHHHHHHHHHHHcCeEEeccCCCce--eEEEEecCCeEEEeeC
Confidence 3578888887765 34445555666777788899875432 233333333 888765
No 83
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.09 E-value=27 Score=26.59 Aligned_cols=40 Identities=15% Similarity=0.266 Sum_probs=35.9
Q ss_pred CCCCCCCcEEEEccCCcccCHHHHHHHHHhCCcceEEEec
Q 045269 1 MSDVCTSSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDV 40 (99)
Q Consensus 1 l~~mk~~ailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV 40 (99)
|+.|+|.-+++..+-|+++...-|-.-|+.--+++..+|-
T Consensus 196 ldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~ 235 (366)
T COG3490 196 LDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGR 235 (366)
T ss_pred hhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCC
Confidence 5789999999999999999999999888888888888873
No 84
>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta. This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y)
Probab=33.56 E-value=76 Score=23.32 Aligned_cols=81 Identities=15% Similarity=0.085 Sum_probs=46.1
Q ss_pred EEEEccC---------CcccCHHHHHHHHHhCCcceEEEecCCC---CCCCC-C----C--cc------------ccC-C
Q 045269 9 LLVNIVR---------GGLLDYEAVAHYLESGHLGGLGLDVAWT---EPFDP-N----D--PI------------LKF-Q 56 (99)
Q Consensus 9 ilIN~aR---------g~lvd~~aL~~aL~~g~i~gaalDV~~~---Ep~~~-~----~--~l------------~~~-~ 56 (99)
++||+|+ .+--+.++..+||+.| .+..-||||+. ||.-- . . +| ... =
T Consensus 11 YfI~SSHNTYL~g~Ql~~~ss~e~y~~aL~~G-cRcvElD~wdg~~~ep~v~HG~tlt~~i~f~~v~~~I~~~AF~~s~y 89 (257)
T cd08595 11 YFISSSHNTYLVSDQLVGPSDLDGYVSALRKG-CRCLEIDCWDGADNEPVVYHGYTLTSKILFKEVITTVEKYAFEKSDY 89 (257)
T ss_pred heeeccccccccCCcccCcccHHHHHHHHHhC-CcEEEEEeecCCCCCcEEecCCCcccccCHHHHHHHHHHHhccCCCC
Confidence 5677762 2233568889999988 56799999985 34300 0 0 00 000 1
Q ss_pred ceEeccCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 045269 57 SVLITPHVGGVTEHSYRSTAKVVGDVALQLHAGTP 91 (99)
Q Consensus 57 nvi~TPH~a~~t~~~~~~~~~~~~~~l~~~~~g~~ 91 (99)
=||+|=..- .+.+-+..+++.+.+.+...+-..+
T Consensus 90 PvIlslE~H-cs~~qQ~~~a~~l~~~lgd~L~~~~ 123 (257)
T cd08595 90 PVVLSLENH-CSTEQQEIMAHYLVSILGEKLLRAP 123 (257)
T ss_pred CEEEEeecc-CCHHHHHHHHHHHHHHHHHhhcCCC
Confidence 233433211 2456677777777777777665444
No 85
>PRK05646 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=32.85 E-value=1.6e+02 Score=21.55 Aligned_cols=22 Identities=14% Similarity=0.138 Sum_probs=18.5
Q ss_pred HHHHHHHHHhCCcceEEEecCC
Q 045269 21 YEAVAHYLESGHLGGLGLDVAW 42 (99)
Q Consensus 21 ~~aL~~aL~~g~i~gaalDV~~ 42 (99)
-..++++|++|.+.|...|-..
T Consensus 183 ~r~ilk~Lk~g~~v~il~Dq~~ 204 (310)
T PRK05646 183 VRGMLKLLRAGRAIWYAPDQDY 204 (310)
T ss_pred HHHHHHHHhCCCeEEEeCCCCC
Confidence 3558899999999999999764
No 86
>PF03480 SBP_bac_7: Bacterial extracellular solute-binding protein, family 7; InterPro: IPR018389 This family of proteins are involved in binding extracellular solutes for transport across the bacterial cytoplasmic membrane. This family includes a C4-dicarboxylate-binding protein DctP [, ] and the sialic acid-binding protein SiaP. The structure of the SiaP receptor has revealed an overall topology similar to ATP binding cassette ESR (extracytoplasmic solute receptors) proteins []. Upon binding of sialic acid, SiaP undergoes domain closure about a hinge region and kinking of an alpha-helix hinge component [].; GO: 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 2HZK_C 2HZL_B 2HPG_C 2XWI_A 2XWK_A 2WX9_A 2CEY_A 2WYP_A 3B50_A 2CEX_B ....
Probab=32.00 E-value=1.5e+02 Score=21.21 Aligned_cols=40 Identities=10% Similarity=0.130 Sum_probs=32.5
Q ss_pred CCcEEEEcc-CCcccCHHHHHHHHHhCCcceEEEecCCCCC
Q 045269 6 TSSLLVNIV-RGGLLDYEAVAHYLESGHLGGLGLDVAWTEP 45 (99)
Q Consensus 6 ~~ailIN~a-Rg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep 45 (99)
.|.+-|.+- -|.+.++.+.++++++|.+-.+......-..
T Consensus 27 ~G~v~i~v~~~g~lg~~~e~~~~v~~G~vdm~~~~~~~~~~ 67 (286)
T PF03480_consen 27 GGRVKIEVFPAGQLGKEAEVLEAVQDGAVDMAVVSPSYLAG 67 (286)
T ss_dssp TTSEEEEEEETTSSSSHHHHHHHHHTTSSSEEEEEGGGGTT
T ss_pred CCeEEEEEecCcccCCHHHHHHHHhCCCccEEeecchhhhh
Confidence 567777774 5779999999999999999988888754444
No 87
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=31.29 E-value=1.2e+02 Score=20.46 Aligned_cols=87 Identities=15% Similarity=0.108 Sum_probs=47.1
Q ss_pred CCCCCcE-EEEccCCcccCHHHHHHHHHhCCcceE-EEecCCCCCCCCCCccccCCceEeccCCCCCcHHHHHHHHHHHH
Q 045269 3 DVCTSSL-LVNIVRGGLLDYEAVAHYLESGHLGGL-GLDVAWTEPFDPNDPILKFQSVLITPHVGGVTEHSYRSTAKVVG 80 (99)
Q Consensus 3 ~mk~~ai-lIN~aRg~lvd~~aL~~aL~~g~i~ga-alDV~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~~~~~~~~~~~~ 80 (99)
.++++.. ++=.-||..++-+++.+.|++-...|. -+-.+=..|.-.+..+.+..+..++ ++-.|-.- .-+.-.++
T Consensus 63 ~l~~~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGGa~G~~~~v~~~a~~~lS--LS~mTfpH-~larlvL~ 139 (157)
T PRK00103 63 ALPKGARVIALDERGKQLSSEEFAQELERWRDDGRSDVAFVIGGADGLSPAVKKRADQSLS--LSKLTLPH-QLVRVLLA 139 (157)
T ss_pred hCCCCCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCccEEEEEcCccccCHHHHHhcCceEE--eccCCCcH-HHHHHHHH
Confidence 4556654 445689999999999999977433332 2333344554344455555554444 34333321 11222355
Q ss_pred HHHHH---HHcCCCC
Q 045269 81 DVALQ---LHAGTPL 92 (99)
Q Consensus 81 ~~l~~---~~~g~~~ 92 (99)
+||-+ .++|.|.
T Consensus 140 EQlYRa~tIl~g~PY 154 (157)
T PRK00103 140 EQLYRAWSILAGHPY 154 (157)
T ss_pred HHHHHHHHHHCCCCC
Confidence 66655 3356654
No 88
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=31.17 E-value=1.5e+02 Score=19.82 Aligned_cols=87 Identities=10% Similarity=0.054 Sum_probs=47.8
Q ss_pred CCCCCcEEEEccCCcccCHHHHHHHHHhCCcceEEEecCCCCCCCCCCccccCCceEeccCCCCCcHHHHHHHHHHHHHH
Q 045269 3 DVCTSSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGGVTEHSYRSTAKVVGDV 82 (99)
Q Consensus 3 ~mk~~ailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~~~~~~~~~~~~~~ 82 (99)
.++++.+++=.-||..+|..++.+.|++-...|--+..+=..|.-.+..+.+..+..++ ++-.|-.- .-+.-.+++|
T Consensus 62 ~~~~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g~~i~FvIGGa~G~~~~v~~~a~~~lS--LS~mTfpH-~larlvL~EQ 138 (153)
T TIGR00246 62 AIGKAHVVTLDIPGKPWTTPQLADTLEKWKTDGRDVTLLIGGPEGLSPTCKAAAEQSWS--LSKLTLPH-PLVRVIVAES 138 (153)
T ss_pred hCCCCeEEEEcCCCCcCCHHHHHHHHHHHhccCCeEEEEEcCCCcCCHHHHHhcCceEE--eecCCCcH-HHHHHHHHHH
Confidence 34545556677899999999999999864433322444445564444445555554443 33333321 1122235567
Q ss_pred HHHH---HcCCCC
Q 045269 83 ALQL---HAGTPL 92 (99)
Q Consensus 83 l~~~---~~g~~~ 92 (99)
|-+. ++|.|.
T Consensus 139 iYRA~tIl~g~PY 151 (153)
T TIGR00246 139 LYRAWSITTNHPY 151 (153)
T ss_pred HHHHHHHHcCCCC
Confidence 6653 355553
No 89
>cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=31.01 E-value=2.2e+02 Score=20.98 Aligned_cols=24 Identities=25% Similarity=0.115 Sum_probs=19.9
Q ss_pred CHHHHHHHHHhCCcceEEEecCCCC
Q 045269 20 DYEAVAHYLESGHLGGLGLDVAWTE 44 (99)
Q Consensus 20 d~~aL~~aL~~g~i~gaalDV~~~E 44 (99)
..++..+||+.| .+..-+|||+.+
T Consensus 31 s~e~y~~aL~~G-cRcvElD~wdG~ 54 (258)
T cd08623 31 SVEMYRQVLLSG-CRCVELDCWKGR 54 (258)
T ss_pred CHHHHHHHHHcC-CCEEEEEeeCCC
Confidence 577899999887 567999999874
No 90
>TIGR02208 lipid_A_msbB lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase. This family consists of MsbB in E. coli and closely related proteins in other species. MsbB is homologous to HtrB (TIGR02207) and acts immediately after it in the biosynthesis of KDO-2 lipid A (also called Re LPS and Re endotoxin). These two enzymes act after creation of KDO-2 lipid IV-A by addition of the KDO sugars.
Probab=30.97 E-value=1.9e+02 Score=21.12 Aligned_cols=22 Identities=23% Similarity=0.128 Sum_probs=19.2
Q ss_pred HHHHHHHHHhCCcceEEEecCC
Q 045269 21 YEAVAHYLESGHLGGLGLDVAW 42 (99)
Q Consensus 21 ~~aL~~aL~~g~i~gaalDV~~ 42 (99)
..+++++|++|.+.+...|-..
T Consensus 182 ~r~i~~aLk~g~~v~il~Dq~~ 203 (305)
T TIGR02208 182 IKALLASLKRGESGYYLPDEDH 203 (305)
T ss_pred HHHHHHHHhCCCeEEEeCCCCC
Confidence 3679999999999999999864
No 91
>PRK10565 putative carbohydrate kinase; Provisional
Probab=30.42 E-value=51 Score=26.29 Aligned_cols=57 Identities=16% Similarity=0.063 Sum_probs=27.9
Q ss_pred CCcEEEEccCCcccCHHHHHHHHHhCCcceEEEecCCCCCCCCCCccccCCceEeccCCC
Q 045269 6 TSSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVG 65 (99)
Q Consensus 6 ~~ailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a 65 (99)
.++++||.+=|.-=....+++.+++... -..||.---.-+.. ++.. ..+.++|||.+
T Consensus 321 ~~a~viGpGlg~~~~~~~~~~~~~~~~~-P~VLDAdaL~ll~~-~~~~-~~~~VLTPh~g 377 (508)
T PRK10565 321 ADVVVIGPGLGQQEWGKKALQKVENFRK-PMLWDADALNLLAI-NPDK-RHNRVITPHPG 377 (508)
T ss_pred CCEEEEeCCCCCCHHHHHHHHHHHhcCC-CEEEEchHHHHHhh-Cccc-cCCeEECCCHH
Confidence 4688999876652111233355544333 26777521110000 0001 12679999976
No 92
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=29.72 E-value=2.2e+02 Score=22.14 Aligned_cols=59 Identities=10% Similarity=-0.035 Sum_probs=34.2
Q ss_pred CCCCCCcEEEEccCCcccCHHHHHHHH-Hh--CCcceEEEe-cCCCCCCCCCC---ccccCCceEe
Q 045269 2 SDVCTSSLLVNIVRGGLLDYEAVAHYL-ES--GHLGGLGLD-VAWTEPFDPND---PILKFQSVLI 60 (99)
Q Consensus 2 ~~mk~~ailIN~aRg~lvd~~aL~~aL-~~--g~i~gaalD-V~~~Ep~~~~~---~l~~~~nvi~ 60 (99)
+.+++|.++|..|=-..--.+.+++.+ ++ |...+-.+. +|.+||..+.. .+.+.|+++.
T Consensus 108 ~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~~~~~~~riv~ 173 (425)
T PRK15182 108 TVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKHRLTNIKKITS 173 (425)
T ss_pred HhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCcccccccCCCeEEE
Confidence 357899999998866666666544443 33 332221112 36678875544 4556677743
No 93
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=29.52 E-value=88 Score=23.01 Aligned_cols=70 Identities=13% Similarity=0.035 Sum_probs=40.7
Q ss_pred CHHHHHHHHHhCCcceEEEecCCCC---CCC-----CCC--ccc------------cC-CceEeccCCCCCcHHHHHHHH
Q 045269 20 DYEAVAHYLESGHLGGLGLDVAWTE---PFD-----PND--PIL------------KF-QSVLITPHVGGVTEHSYRSTA 76 (99)
Q Consensus 20 d~~aL~~aL~~g~i~gaalDV~~~E---p~~-----~~~--~l~------------~~-~nvi~TPH~a~~t~~~~~~~~ 76 (99)
..++..+||+.| .+..-||||+.+ |.- ... ++. .. ==||+|=..- .+.+-+..++
T Consensus 31 s~e~y~~aL~~G-cRcvElD~wdg~~~eP~V~HG~tlts~i~f~~v~~~Ik~~AF~~s~yPvIlslE~H-c~~~qQ~~ma 108 (258)
T cd08631 31 SVEGYIRALKRG-CRCVEVDVWDGPNGEPIVYHGHTFTSKILFKDVVAAVAQYAFQVSDYPVILSLENH-CGVEQQQTMA 108 (258)
T ss_pred CHHHHHHHHHcC-CcEEEEEeecCCCCCcEEeeCCcccCCcCHHHHHHHHHHHhccCCCCCEEEEeecc-CCHHHHHHHH
Confidence 678999999987 567999999863 420 000 010 00 1233333211 2456777788
Q ss_pred HHHHHHHHHHHcCCC
Q 045269 77 KVVGDVALQLHAGTP 91 (99)
Q Consensus 77 ~~~~~~l~~~~~g~~ 91 (99)
+.+.+.+...+--.+
T Consensus 109 ~~l~~~lGd~L~~~~ 123 (258)
T cd08631 109 QHLTEILGEKLLSTT 123 (258)
T ss_pred HHHHHHHHHHhcCCC
Confidence 777777777664333
No 94
>PF11950 DUF3467: Protein of unknown function (DUF3467); InterPro: IPR021857 This entry is represented by Bacteriophage 92, 0rf53. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family of proteins are functionally uncharacterised. This protein is found in bacteria, archaea and viruses. Proteins in this family are typically between 101 to 118 amino acids in length.
Probab=29.03 E-value=43 Score=20.41 Aligned_cols=27 Identities=11% Similarity=0.204 Sum_probs=20.7
Q ss_pred CCceEeccCCCCCcHHHHHHHHHHHHHHHHHHHc
Q 045269 55 FQSVLITPHVGGVTEHSYRSTAKVVGDVALQLHA 88 (99)
Q Consensus 55 ~~nvi~TPH~a~~t~~~~~~~~~~~~~~l~~~~~ 88 (99)
..+|++||..| .++...+.+++.+|-+
T Consensus 59 ~sRVimsP~~A-------KrL~~aL~~~l~~YE~ 85 (92)
T PF11950_consen 59 SSRVIMSPQHA-------KRLLKALQQNLQKYEQ 85 (92)
T ss_pred EEEEEeCHHHH-------HHHHHHHHHHHHHHHH
Confidence 34688888654 8888888889988864
No 95
>PRK06946 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=28.76 E-value=2.1e+02 Score=20.71 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=19.1
Q ss_pred HHHHHHHHHhCCcceEEEecCC
Q 045269 21 YEAVAHYLESGHLGGLGLDVAW 42 (99)
Q Consensus 21 ~~aL~~aL~~g~i~gaalDV~~ 42 (99)
-..++++|++|.+.|+..|-..
T Consensus 170 ~r~~~~~Lk~g~~v~~l~Dq~~ 191 (293)
T PRK06946 170 ARQVLRWLRDGKPVMLGADMDF 191 (293)
T ss_pred HHHHHHHHhCCCeEEEeCCCCC
Confidence 4579999999999999999863
No 96
>PRK07369 dihydroorotase; Provisional
Probab=28.76 E-value=49 Score=25.51 Aligned_cols=25 Identities=20% Similarity=0.246 Sum_probs=21.3
Q ss_pred cCHHHHHHHHHhCCcceEEEecCCC
Q 045269 19 LDYEAVAHYLESGHLGGLGLDVAWT 43 (99)
Q Consensus 19 vd~~aL~~aL~~g~i~gaalDV~~~ 43 (99)
=|.++|.++|++|.|-..+.|=-..
T Consensus 287 ~d~~aL~~~l~~G~Id~i~SDHaP~ 311 (418)
T PRK07369 287 SDRQALIEGVRTGVIDAIAIDHAPY 311 (418)
T ss_pred HHHHHHHHHHhcCCCCEEEcCCCCC
Confidence 5789999999999999888886443
No 97
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=28.71 E-value=1.2e+02 Score=25.71 Aligned_cols=36 Identities=19% Similarity=0.172 Sum_probs=28.0
Q ss_pred EEEEccC---------CcccCHHHHHHHHHhCCcceEEEecCCCCC
Q 045269 9 LLVNIVR---------GGLLDYEAVAHYLESGHLGGLGLDVAWTEP 45 (99)
Q Consensus 9 ilIN~aR---------g~lvd~~aL~~aL~~g~i~gaalDV~~~Ep 45 (99)
+||++|+ |+--+.+..++||+.| .+..-||+|+.+-
T Consensus 298 YFI~SSHNTYLtg~Ql~g~sSvegyI~ALk~G-cR~vElD~Wdg~~ 342 (746)
T KOG0169|consen 298 YFISSSHNTYLTGDQLGGPSSVEGYIRALKKG-CRCVELDCWDGPN 342 (746)
T ss_pred heEeccccceecccccCCccccHHHHHHHHhC-CeEEEEecccCCC
Confidence 6777775 4455788999999999 5569999998753
No 98
>KOG2455 consensus Delta-1-pyrroline-5-carboxylate dehydrogenase [Amino acid transport and metabolism]
Probab=28.50 E-value=83 Score=25.36 Aligned_cols=41 Identities=17% Similarity=0.435 Sum_probs=31.3
Q ss_pred CCCCccccCCceEeccCCCCC----cHHHHHHHHHHHHHHHHHHHc
Q 045269 47 DPNDPILKFQSVLITPHVGGV----TEHSYRSTAKVVGDVALQLHA 88 (99)
Q Consensus 47 ~~~~~l~~~~nvi~TPH~a~~----t~~~~~~~~~~~~~~l~~~~~ 88 (99)
|.|.|++. +-+.-+||.||- |...++++...+.+|+.+|..
T Consensus 260 Pad~~~f~-dtita~~hfaglnftgS~~~fk~lwk~V~~n~~~Y~~ 304 (561)
T KOG2455|consen 260 PADGPLFG-DTITASPHFAGLNFTGSVPTFKHLWKKVGENVDNYRT 304 (561)
T ss_pred cCCCCeec-ceeccCcccceeeeecccHHHHHHHHHHHhhhhhhhc
Confidence 35556655 677889999983 445678899999999999864
No 99
>cd08557 PI-PLCc_bacteria_like Catalytic domain of bacterial phosphatidylinositol-specific phospholipase C and similar proteins. This subfamily corresponds to the catalytic domain present in bacterial phosphatidylinositol-specific phospholipase C (PI-PLC, EC 4.6.1.13) and their sequence homologs found in eukaryota. Bacterial PI-PLCs participate in Ca2+-independent PI metabolism, hydrolyzing the membrane lipid phosphatidylinositol (PI) to produce phosphorylated myo-inositol and diacylglycerol (DAG). Although their precise physiological function remains unclear, bacterial PI-PLCs may function as virulence factors in some pathogenic bacteria. Bacterial PI-PLCs contain a single TIM-barrel type catalytic domain. Its catalytic mechanism is based on general base and acid catalysis utilizing two well conserved histidines, and consists of two steps, a phosphotransfer and a phosphodiesterase reaction. Eukaryotic homologs in this family are named as phosphatidylinositol-specific phospholipase C X
Probab=28.19 E-value=1.1e+02 Score=21.38 Aligned_cols=57 Identities=19% Similarity=0.138 Sum_probs=35.9
Q ss_pred HHHHHHHHHhCCcceEEEecCCCCCCCCCCccccCCceEeccCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 045269 21 YEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGGVTEHSYRSTAKVVGDVALQLHAGTP 91 (99)
Q Consensus 21 ~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~~~~~~~~~~~~~~l~~~~~g~~ 91 (99)
...+.+.|+.| +++.=+|++..++ +.-+..-|-..... ......+++.+.+|+...|
T Consensus 40 ~~~i~~QL~~G-iR~~dlr~~~~~~----------~~~~~~~H~~~~~~---~~~~~~vL~~i~~fl~~~p 96 (271)
T cd08557 40 DLSITDQLDAG-VRYLDLRVAYDPD----------DGDLYVCHGLFLLN---GQTLEDVLNEVKDFLDAHP 96 (271)
T ss_pred CCCHHHHHhcC-ceEEEEEeeeecC----------CCcEEEEccccccC---cccHHHHHHHHHHHHHHCC
Confidence 45678999999 8989999987765 11222233222110 2334567788888887765
No 100
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=28.10 E-value=84 Score=22.02 Aligned_cols=66 Identities=23% Similarity=0.314 Sum_probs=41.5
Q ss_pred EEEEccCCcccCHHHHHHHHHhCCcceEEEecCCC------CC-----CCCCCccccCCceEeccCCCCCcHHHHHHHHH
Q 045269 9 LLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWT------EP-----FDPNDPILKFQSVLITPHVGGVTEHSYRSTAK 77 (99)
Q Consensus 9 ilIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~------Ep-----~~~~~~l~~~~nvi~TPH~a~~t~~~~~~~~~ 77 (99)
++|-.+||+++--.-|.+.|.-..|.++.+=-|.. ++ ++.+ + +.-.+|++-=-+. -|.++...+.+
T Consensus 32 vIiaiaRGG~~pariLsd~L~~~~l~~i~v~~y~~~~~~~~~~~v~~~~~~d-~-l~GkkVLIVDDI~-DTG~Tl~~a~~ 108 (192)
T COG2236 32 VIVAIARGGLIPARILSDFLGVKPLYSIKVEHYDETAERDGEAKVKYPITID-P-LSGKKVLIVDDIV-DTGETLELALE 108 (192)
T ss_pred EEEEEcCCceehHHHHHHHhCCCceEEEEEEEehhhcccCCcceeecCcccc-c-cCCCeEEEEeccc-CchHhHHHHHH
Confidence 57889999999999999999888886544433321 22 1111 1 4557887766665 34444444333
No 101
>cd07029 RNAP_I_III_AC19 AC19 subunit of Eukaryotic RNA polymerase (RNAP) I and RNAP III. The eukaryotic AC19 subunit of RNA polymerase (RNAP) I and RNAP III is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. At least three distinct RNAP complexes are found in eukaryotic nuclei: RNAP I, RNAP II, and RNAP III. RNAP I is responsible for the synthesis of ribosomal RNA precursor, while RNAP III functions in the synthesis of 5S and tRNA. The AC19 subunit is the equivalent of the RPB11 subunit of RNAP II. The RPB11 subunit heterodimerizes with the RPB3 subunit, and together with RPB10 and RPB12, anchors the two largest subunits, RPB1 and RPB2, and stabilizes their association. The homology of AC19 to RPB11 suggests a similar function. The AC19 subunit is likely to ass
Probab=27.85 E-value=1.4e+02 Score=17.90 Aligned_cols=51 Identities=8% Similarity=0.067 Sum_probs=36.8
Q ss_pred HhCCcceEEEecCCCCCCCCCCccccCCceEeccCCCCCcHHHHHHHHHHHHHHHHHHH
Q 045269 29 ESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGGVTEHSYRSTAKVVGDVALQLH 87 (99)
Q Consensus 29 ~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~~~~~~~~~~~~~~l~~~~ 87 (99)
+..++..|+-++ .||+...+++.+.-.-+....++..+..+.+.+.+..+.
T Consensus 32 ~~p~V~fagY~v--------pHPl~~~~~lriqT~~~~~p~~al~~a~~~l~~~~~~~~ 82 (85)
T cd07029 32 KNPEVEFCGYSI--------PHPSENKINLRIQTKGGEPAVDVLKKGLEDLEQICDHIL 82 (85)
T ss_pred hCCCceEEeecc--------cCCCCCccEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 445666677766 577777888888777556778888888877777666654
No 102
>COG1560 HtrB Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=27.81 E-value=2.5e+02 Score=21.06 Aligned_cols=70 Identities=14% Similarity=0.166 Sum_probs=41.9
Q ss_pred HHHHHHHHHhCCcceEEEecCCCC--C----C------CC----------------CCccccCC----ceEeccCCCCCc
Q 045269 21 YEAVAHYLESGHLGGLGLDVAWTE--P----F------DP----------------NDPILKFQ----SVLITPHVGGVT 68 (99)
Q Consensus 21 ~~aL~~aL~~g~i~gaalDV~~~E--p----~------~~----------------~~~l~~~~----nvi~TPH~a~~t 68 (99)
-..|+++|++|...++.-|=-..+ . + .. -.+.+..+ .+.+.|+..+..
T Consensus 184 ir~li~~Lk~G~~v~~lpDqd~~~~~~vfvpFFg~~a~T~t~~~~LA~~~~a~vip~~~~r~~~g~~y~l~i~p~~~~~~ 263 (308)
T COG1560 184 IRQLIKALKQGEAVGYLPDQDYGPGESVFVPFFGVPAATTTGPAKLARLTGAAVVPVFPVRNPDGSGYTLHIHPPMTDDP 263 (308)
T ss_pred HHHHHHHHhcCCeEEEecCcccCCCCCeEeccCCCcccccchHHHHHHHhCCCEEEEEEEEeCCCCeEEEEEeccccCCC
Confidence 468999999999998877732211 1 1 00 00112222 477888777766
Q ss_pred HHHHHHHHHHHHHHHHHHHcCC
Q 045269 69 EHSYRSTAKVVGDVALQLHAGT 90 (99)
Q Consensus 69 ~~~~~~~~~~~~~~l~~~~~g~ 90 (99)
.+.....++.+.+.+++++.-.
T Consensus 264 ~~D~~~~a~~mn~~~E~~I~~~ 285 (308)
T COG1560 264 SEDVEADAQRMNDFVEKWIRAH 285 (308)
T ss_pred CCCHHHHHHHHHHHHHHHHHcC
Confidence 6656666666666666666543
No 103
>PRK07920 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=27.40 E-value=2.5e+02 Score=20.42 Aligned_cols=85 Identities=16% Similarity=0.170 Sum_probs=46.3
Q ss_pred CcEEEEccCCcccCHHHHHHHHHhCCcceEEEecCCCC-----CC-------CCC---------Cccc-----cCC---c
Q 045269 7 SSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTE-----PF-------DPN---------DPIL-----KFQ---S 57 (99)
Q Consensus 7 ~ailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~E-----p~-------~~~---------~~l~-----~~~---n 57 (99)
|..+|-..++.-=.-..++++|++|.+.++..|-...+ |+ +.. .|++ ..+ .
T Consensus 158 g~~~i~~~~~~~~~~r~ii~~Lk~g~~v~il~Dq~~~~~g~~v~FFG~~a~t~~g~a~LA~~~~apVvp~~~~r~~~~y~ 237 (298)
T PRK07920 158 GFEVLPLTGGERPPFEVLAERLRAGGVVCLLADRDLTRSGVEVDFFGERTRMPAGPAALALETGAALLPVHLWFEGDGWG 237 (298)
T ss_pred CCEEEecCCCCchHHHHHHHHHHcCCeEEEEeccCccCCCCEEeeCCCCCCCCCCHHHHHHHHCCcEEEEEEEEeCCeEE
Confidence 44455433321112367999999999999999975321 11 000 0110 011 2
Q ss_pred eEeccCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 045269 58 VLITPHVGGVTEHSYRSTAKVVGDVALQLHAGTP 91 (99)
Q Consensus 58 vi~TPH~a~~t~~~~~~~~~~~~~~l~~~~~g~~ 91 (99)
+.+.|-+.....+......+...+.+++++...|
T Consensus 238 v~~~~~~~~~~~~~~~~~t~~~~~~lE~~Ir~~P 271 (298)
T PRK07920 238 FRVHPPLDVPSAEDVAAMTQALADAFAANIAAHP 271 (298)
T ss_pred EEEeCCCCCCchhHHHHHHHHHHHHHHHHHHhCh
Confidence 3444544444455666677777777777776544
No 104
>cd01817 RGS12_RBD Ubiquitin domain of RGS12 and RGS14. RGS12 (regulator of G signalling 12), and RGS14, are members of a family of GTPase-activating proteins (GAP's) specific for the G-alpha subunit, which act as key inhibitors of G-protein-mediated cell responses in eukaryotes. Their domain architecture includes tandem RBD domains as well as PDZ , PTB, and RGS, and GoLoco domains.
Probab=27.00 E-value=83 Score=18.70 Aligned_cols=39 Identities=10% Similarity=0.100 Sum_probs=29.8
Q ss_pred CCCC-cEEEEccCCcccCHHHHHHHHHhCCcceEEEecCCC
Q 045269 4 VCTS-SLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWT 43 (99)
Q Consensus 4 mk~~-ailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~ 43 (99)
+++| .-+|++-.|.-| .+.|.++++...+...+.|||-.
T Consensus 6 LPdg~~T~V~vrpG~ti-~d~L~kllekRgl~~~~~~vf~~ 45 (73)
T cd01817 6 LPDGSTTVVPTRPGESI-RDLLSGLCEKRGINYAAVDLFLV 45 (73)
T ss_pred CCCCCeEEEEecCCCCH-HHHHHHHHHHcCCChhHEEEEEe
Confidence 3454 356676666665 67899999999999999999844
No 105
>PRK08905 lipid A biosynthesis lauroyl acyltransferase; Validated
Probab=26.09 E-value=1.1e+02 Score=22.27 Aligned_cols=33 Identities=15% Similarity=0.060 Sum_probs=23.5
Q ss_pred CcEEEEccCCcccCHHHHHHHHHhCCcceEEEecCC
Q 045269 7 SSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAW 42 (99)
Q Consensus 7 ~ailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~ 42 (99)
|.-+|...+++ .-+++++|++|.+.+...|-..
T Consensus 150 g~~~i~~~~~~---~~~i~~aLk~g~~v~il~Dq~~ 182 (289)
T PRK08905 150 NMRTAPATPQG---VRMLVKALRRGEAVGILPDQVP 182 (289)
T ss_pred CCceeccCCcc---HHHHHHHHhcCCeEEEcCCCCC
Confidence 43444333333 3679999999999999999764
No 106
>PLN02222 phosphoinositide phospholipase C 2
Probab=25.66 E-value=1.6e+02 Score=24.22 Aligned_cols=76 Identities=14% Similarity=0.096 Sum_probs=45.9
Q ss_pred EEEEccCC---------cccCHHHHHHHHHhCCcceEEEecCCCC---CCCCCC--------------------ccccC-
Q 045269 9 LLVNIVRG---------GLLDYEAVAHYLESGHLGGLGLDVAWTE---PFDPND--------------------PILKF- 55 (99)
Q Consensus 9 ilIN~aRg---------~lvd~~aL~~aL~~g~i~gaalDV~~~E---p~~~~~--------------------~l~~~- 55 (99)
++||.|+- +--..++..+||+.| .+..-||+|+.+ |+.-.| .+...
T Consensus 112 YfI~SSHNTYL~g~Ql~~~ss~~~y~~aL~~G-cRcvElD~wdg~~~~~~~v~HG~tlt~~i~f~~v~~~I~~~aF~~s~ 190 (581)
T PLN02222 112 YFIFTGHNSYLTGNQLSSDCSEVPIIDALKKG-VRVIELDIWPNSDKDDIDVLHGMTLTTPVGLIKCLKAIRAHAFDVSD 190 (581)
T ss_pred heeecccCccccCCcccCccCHHHHHHHHHcC-CcEEEEEeccCCCCCCCeEeeCCcccCceeHHHHHHHHHHhcccCCC
Confidence 67888763 223467899999988 556999999753 210111 01111
Q ss_pred CceEec--cCCCCCcHHHHHHHHHHHHHHHHHHHc
Q 045269 56 QSVLIT--PHVGGVTEHSYRSTAKVVGDVALQLHA 88 (99)
Q Consensus 56 ~nvi~T--PH~a~~t~~~~~~~~~~~~~~l~~~~~ 88 (99)
==||+| .|. +.+-+..+++.+.+.+...+-
T Consensus 191 yPvIlslE~Hc---~~~qQ~~~a~~~~~~~g~~L~ 222 (581)
T PLN02222 191 YPVVVTLEDHL---TPDLQSKVAEMVTEIFGEILF 222 (581)
T ss_pred CCEEEEeecCC---CHHHHHHHHHHHHHHHhhhhc
Confidence 123333 464 467778888877777776654
No 107
>PRK07627 dihydroorotase; Provisional
Probab=25.27 E-value=62 Score=25.00 Aligned_cols=25 Identities=24% Similarity=0.234 Sum_probs=21.8
Q ss_pred cCHHHHHHHHHhCCcceEEEecCCC
Q 045269 19 LDYEAVAHYLESGHLGGLGLDVAWT 43 (99)
Q Consensus 19 vd~~aL~~aL~~g~i~gaalDV~~~ 43 (99)
=|.++|.++|++|.+-..+.|--..
T Consensus 286 ~d~~~L~~~l~~G~id~i~SDHaP~ 310 (425)
T PRK07627 286 RDREAIRAALADGTIDAICSDHTPV 310 (425)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCCCC
Confidence 6889999999999999999997443
No 108
>PF04199 Cyclase: Putative cyclase; InterPro: IPR007325 Proteins in this family are thought to be cyclase enzymes. They are found in proteins involved in antibiotic synthesis. However they are also found in organisms that do not make antibiotics pointing to a wider role for these proteins. The proteins contain a conserved motif HXGTHXDXPXH that is likely to form a part of the active site.; PDB: 2B0A_A 3KRV_A 1R61_A.
Probab=25.18 E-value=86 Score=20.67 Aligned_cols=41 Identities=15% Similarity=0.201 Sum_probs=26.7
Q ss_pred CCcEEEEccC-Cccc--C-----------HHHHHHHHHhCCcceEEEecCCCCCC
Q 045269 6 TSSLLVNIVR-GGLL--D-----------YEAVAHYLESGHLGGLGLDVAWTEPF 46 (99)
Q Consensus 6 ~~ailIN~aR-g~lv--d-----------~~aL~~aL~~g~i~gaalDV~~~Ep~ 46 (99)
-..+||+|+. ...- + ..+..+.|.+.++++.++|....++.
T Consensus 116 gdivlirTG~~~~~~~~~~~~y~~~~p~ls~eaa~~L~~~~v~~vG~D~~s~d~~ 170 (171)
T PF04199_consen 116 GDIVLIRTGWNDKRWEMGTEEYFNDFPGLSPEAAEWLAERGVKAVGIDTPSVDPP 170 (171)
T ss_dssp TSEEEEE-CG-GGGT--TSGCGGCT--EE-HCCHHHHHHCT-SEEEESSSSS--S
T ss_pred CcEEEEECCchhhhcccCCHhHccCCCcCCHHHHHHHHHCCCCEEEECCCCCCCC
Confidence 4478899987 2322 1 23567888899999999999988874
No 109
>PRK08655 prephenate dehydrogenase; Provisional
Probab=24.69 E-value=3.1e+02 Score=21.32 Aligned_cols=56 Identities=32% Similarity=0.402 Sum_probs=32.2
Q ss_pred CCCCCcEEEEccCCcccCHHHHHHHHHhCCcceEEEecCCCCCCC-CCCccccCCceEeccCC
Q 045269 3 DVCTSSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFD-PNDPILKFQSVLITPHV 64 (99)
Q Consensus 3 ~mk~~ailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~-~~~~l~~~~nvi~TPH~ 64 (99)
.++++++++.++.......+++.+.+..+. .+...-|+. +..+++.-..+++||+-
T Consensus 81 ~l~~~~iViDvsSvK~~~~~~l~~~~~~~~------~~V~~HPmaGp~~~~~~g~~~il~p~~ 137 (437)
T PRK08655 81 HVKEGSLLMDVTSVKERPVEAMEEYAPEGV------EILPTHPMFGPRTPSLKGQVVILTPTE 137 (437)
T ss_pred hCCCCCEEEEcccccHHHHHHHHHhcCCCC------EEEEcCCCCCCCCcccCCCEEEEecCC
Confidence 578899999998754444455555443321 122223321 22356667788999975
No 110
>TIGR00489 aEF-1_beta translation elongation factor aEF-1 beta. This model describes the archaeal translation elongation factor aEF-1 beta. The member from Sulfolobus solfataricus was demonstrated experimentally. It is a dimer that catalyzes the exchange of GDP for GTP on aEF-1 alpha.
Probab=24.52 E-value=1.4e+02 Score=18.26 Aligned_cols=54 Identities=17% Similarity=0.214 Sum_probs=39.5
Q ss_pred CcccCHHHHHHHHHhCCcceEEEecCCCCCCCCCCccccCCceEeccCCCCCcHHH
Q 045269 16 GGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGGVTEHS 71 (99)
Q Consensus 16 g~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a~~t~~~ 71 (99)
+.=+|.++|.+.+++..-.|+-+--+..||+... |..+.=.++.|--.+.|.+.
T Consensus 14 s~evDle~L~~~ik~~~~~g~~~~~~~~ePiaFG--LkaL~~~~vv~D~~g~td~l 67 (88)
T TIGR00489 14 SPDVDLEALKEKIKERIPEGVEIRKIDEEPIAFG--LVAINVMVVMGDAEGGTEAA 67 (88)
T ss_pred CCccCHHHHHHHHHHhCcCCcEEeeeEEEeeecc--ceeeEEEEEEecCCcChHHH
Confidence 3457999999999998888887777888897433 55555556677766777553
No 111
>PRK15042 pduD propanediol dehydratase medium subunit; Provisional
Probab=24.33 E-value=2.8e+02 Score=20.00 Aligned_cols=78 Identities=22% Similarity=0.334 Sum_probs=45.9
Q ss_pred EEEccCCcccCHHHHHHHHHhCCcceEEEecC-----CCCCCCC--CCccccCCceEeccCCCCCcHHHHHHHHHHHHHH
Q 045269 10 LVNIVRGGLLDYEAVAHYLESGHLGGLGLDVA-----WTEPFDP--NDPILKFQSVLITPHVGGVTEHSYRSTAKVVGDV 82 (99)
Q Consensus 10 lIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~-----~~Ep~~~--~~~l~~~~nvi~TPH~a~~t~~~~~~~~~~~~~~ 82 (99)
++-+.+..=+-.-+...|-.|+--.|.++|-- ...-+++ +.||+...-. + +.+.++ .+=.|
T Consensus 99 vv~~~~~~Dv~~lA~~AA~~S~LgVGIGI~skGt~VIH~k~Lppl~nleLf~~aPl-~-------~~e~~R----~iG~N 166 (219)
T PRK15042 99 VVRVFRTSDVAFVAVEGARLSGSGIGIGIQSKGTTVIHQKDLPPLSNLELFPQAPL-L-------TLETYR----AIGKN 166 (219)
T ss_pred EEEeCCCCCHHHHHHHHHHhCCCceEEEEcCCCcEEEEcCCCCCCcccccccCCCC-C-------CHHHHH----HHhHH
Confidence 44555555566677788888998888998832 2222222 2233322111 1 234444 44457
Q ss_pred HHHHHcCCCCCcccccC
Q 045269 83 ALQLHAGTPLTGIEPVN 99 (99)
Q Consensus 83 l~~~~~g~~~~~~~~~n 99 (99)
--+|.+|..+..+-+.|
T Consensus 167 AARlVKGesp~Pvp~~n 183 (219)
T PRK15042 167 AARYAKGESPQPVPTLN 183 (219)
T ss_pred HHHHhcCCCCCCcccCC
Confidence 77889999888876655
No 112
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=23.67 E-value=1.5e+02 Score=22.33 Aligned_cols=40 Identities=25% Similarity=0.307 Sum_probs=33.9
Q ss_pred CCCCCcEEEEccCCcccCHHHHHHHHHhC--CcceEEEecCC
Q 045269 3 DVCTSSLLVNIVRGGLLDYEAVAHYLESG--HLGGLGLDVAW 42 (99)
Q Consensus 3 ~mk~~ailIN~aRg~lvd~~aL~~aL~~g--~i~gaalDV~~ 42 (99)
.+.++..||--+-|..--..-|+++|... ....+++|+..
T Consensus 73 ~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~ 114 (319)
T TIGR03439 73 SIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSR 114 (319)
T ss_pred hcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCH
Confidence 46678899999999999999999999753 46789999964
No 113
>KOG3086 consensus Predicted dioxygenase [General function prediction only]
Probab=23.65 E-value=45 Score=24.76 Aligned_cols=14 Identities=36% Similarity=0.601 Sum_probs=10.3
Q ss_pred CceEeccCCCCCcHH
Q 045269 56 QSVLITPHVGGVTEH 70 (99)
Q Consensus 56 ~nvi~TPH~a~~t~~ 70 (99)
.+.|+.|| ||+|.-
T Consensus 40 aRaiIaPH-AGY~Yc 53 (296)
T KOG3086|consen 40 ARAIIAPH-AGYTYC 53 (296)
T ss_pred ceEEEcCC-CCcccc
Confidence 48999999 555543
No 114
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=23.59 E-value=75 Score=20.85 Aligned_cols=37 Identities=8% Similarity=0.097 Sum_probs=25.7
Q ss_pred CCCCCCcEEEEccCCcccCHHHHHHHHHhCCcceEEEec
Q 045269 2 SDVCTSSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDV 40 (99)
Q Consensus 2 ~~mk~~ailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV 40 (99)
+.+++|.++|+++=...=....+.+.+.+..+ ..+|+
T Consensus 82 ~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~--~~vda 118 (163)
T PF03446_consen 82 AGLRPGKIIIDMSTISPETSRELAERLAAKGV--RYVDA 118 (163)
T ss_dssp GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTE--EEEEE
T ss_pred hccccceEEEecCCcchhhhhhhhhhhhhccc--eeeee
Confidence 46789999999998888888888888876554 46665
No 115
>KOG0881 consensus Cyclophilin type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=23.59 E-value=1.1e+02 Score=20.41 Aligned_cols=45 Identities=18% Similarity=0.178 Sum_probs=34.5
Q ss_pred ccccCCceEeccCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCcc
Q 045269 51 PILKFQSVLITPHVGGVTEHSYRSTAKVVGDVALQLHAGTPLTGI 95 (99)
Q Consensus 51 ~l~~~~nvi~TPH~a~~t~~~~~~~~~~~~~~l~~~~~g~~~~~~ 95 (99)
+-|+.|+|.+---++-.+.|-..+-+-..++|+.++.+.+-..++
T Consensus 5 ~~~q~~~V~LeTsmG~i~~ElY~kHaP~TC~NF~eLarrgYYn~v 49 (164)
T KOG0881|consen 5 PEWQPPNVTLETSMGKITLELYWKHAPRTCQNFAELARRGYYNGV 49 (164)
T ss_pred ccCCCCeEEEeecccceehhhhhhcCcHHHHHHHHHHhcccccce
Confidence 457889999988889888888777777788888777765555554
No 116
>PF13263 PHP_C: PHP-associated; PDB: 2Z4G_B 2YXO_B 2YZ5_A 3DCP_B.
Probab=23.52 E-value=27 Score=19.13 Aligned_cols=16 Identities=19% Similarity=0.241 Sum_probs=0.0
Q ss_pred cccCHHHHHHHHHhCC
Q 045269 17 GLLDYEAVAHYLESGH 32 (99)
Q Consensus 17 ~lvd~~aL~~aL~~g~ 32 (99)
++-+.++|+++|++|+
T Consensus 40 ~~~s~~~l~~alr~g~ 55 (56)
T PF13263_consen 40 PIRSPEELLEALRAGR 55 (56)
T ss_dssp ----------------
T ss_pred cccccccccccccccC
Confidence 3446788999999886
No 117
>COG4252 Predicted transmembrane sensor domain [Signal transduction mechanisms]
Probab=23.36 E-value=1.4e+02 Score=23.30 Aligned_cols=39 Identities=18% Similarity=0.313 Sum_probs=25.7
Q ss_pred HHHHHHHhCCcceEEEecCCCCCCCCCCc-----cccCCceEec
Q 045269 23 AVAHYLESGHLGGLGLDVAWTEPFDPNDP-----ILKFQSVLIT 61 (99)
Q Consensus 23 aL~~aL~~g~i~gaalDV~~~Ep~~~~~~-----l~~~~nvi~T 61 (99)
.|++.|+.-+=+..+||++-.+|..+.++ +-+.+|++..
T Consensus 87 ~Ll~kL~a~qp~aIgLDi~r~~P~~~~~~~La~~~~~~~nli~~ 130 (400)
T COG4252 87 RLLDKLAAAQPRAIGLDIYRDLPSSPGDRALAAVLQRAPNLIGV 130 (400)
T ss_pred HHHHHHHhcCCcEEEEEEeecCCCCcccHHHHHHhccCcceEEE
Confidence 45666777777889999999998643332 3344666543
No 118
>PF06903 VirK: VirK protein; InterPro: IPR010694 This family consists of several bacterial VirK proteins of around 145 residues in length. The function of this family is unknown [].
Probab=23.35 E-value=1e+02 Score=19.41 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=23.5
Q ss_pred ccCHHHHHHHHHhCCcceEEEecCCCCC
Q 045269 18 LLDYEAVAHYLESGHLGGLGLDVAWTEP 45 (99)
Q Consensus 18 lvd~~aL~~aL~~g~i~gaalDV~~~Ep 45 (99)
+-+..++.+||..|+-..+.+|.-.-.|
T Consensus 3 L~~~~~i~~AL~~Gk~V~v~iDls~Ct~ 30 (100)
T PF06903_consen 3 LNTYAAILQALDAGKNVTVVIDLSQCTP 30 (100)
T ss_pred cccHHHHHHHHHcCCeEEEEEEHHHCcc
Confidence 4467899999999999999999765554
No 119
>cd06926 RNAP_II_RPB11 RPB11 subunit of Eukaryotic RNA polymerase II. The eukaryotic RPB11 subunit of RNA polymerase (RNAP) II is involved in the assembly of RNAP subunits. RNAP is a large multi-subunit complex responsible for the synthesis of RNA. It is the principal enzyme of the transcription process, and is a final target in many regulatory pathways that control gene expression in all living cells. At least three distinct RNAP complexes are found in eukaryotic nuclei: RNAP I, RNAP II, and RNAP III. RNAP II is responsible for the synthesis of mRNA precursor. The RPB11 subunit heterodimerizes with the RPB3 subunit, and together with RPB10 and RPB12, anchors the two largest subunits, RPB1 and RPB2, and stabilizes their association.
Probab=23.18 E-value=1.9e+02 Score=17.66 Aligned_cols=40 Identities=8% Similarity=-0.011 Sum_probs=27.7
Q ss_pred CCccccCCceEeccCCCCCcHHHHHHHHHHHHHHHHHHHc
Q 045269 49 NDPILKFQSVLITPHVGGVTEHSYRSTAKVVGDVALQLHA 88 (99)
Q Consensus 49 ~~~l~~~~nvi~TPH~a~~t~~~~~~~~~~~~~~l~~~~~ 88 (99)
.||+...+.+.+.-.-+....++..+..+.+.+.+..+.+
T Consensus 52 pHPl~~~~~l~i~t~~~~~p~~al~~a~~~l~~~~~~~~~ 91 (93)
T cd06926 52 PHPLEHKIELRIQTDGSITPKEALKNAITDLISELSLLKE 91 (93)
T ss_pred CCCCCCceEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 4666656666666664556778888888888887776654
No 120
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=23.02 E-value=43 Score=24.55 Aligned_cols=21 Identities=14% Similarity=0.436 Sum_probs=15.4
Q ss_pred CCCCCCCcEEEEccCC-cccCH
Q 045269 1 MSDVCTSSLLVNIVRG-GLLDY 21 (99)
Q Consensus 1 l~~mk~~ailIN~aRg-~lvd~ 21 (99)
+++||+++++||++-. .-+|.
T Consensus 227 l~~~k~~aliIDlas~Pg~tdf 248 (287)
T TIGR02853 227 LSKLPKHAVIIDLASKPGGTDF 248 (287)
T ss_pred HhcCCCCeEEEEeCcCCCCCCH
Confidence 3679999999999763 34454
No 121
>PRK08044 allantoinase; Provisional
Probab=23.01 E-value=79 Score=24.55 Aligned_cols=36 Identities=14% Similarity=-0.059 Sum_probs=26.7
Q ss_pred cEEEEccCCcccCHHHHHHHHHhCCcceEEEecCCC
Q 045269 8 SLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWT 43 (99)
Q Consensus 8 ailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~ 43 (99)
..-+|--=..--|.++|.++|++|.+-..+.|--..
T Consensus 284 ~~k~~PPlr~~~d~~aL~~~l~~G~id~i~sDH~P~ 319 (449)
T PRK08044 284 LAKCSPPIRDLENQKGMWEKLFNGEIDCLVSDHSPC 319 (449)
T ss_pred cEEEcCCCCChHHHHHHHHHHhCCCceEEEcCCCCC
Confidence 344555333347899999999999999999987543
No 122
>PF00281 Ribosomal_L5: Ribosomal protein L5; InterPro: IPR002132 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L5, ~180 amino acids in length, is one of the proteins from the large ribosomal subunit. In Escherichia coli, L5 is known to be involved in binding 5S RNA to the large ribosomal subunit. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, , , ], groups: Eubacterial L5. Algal chloroplast L5. Cyanelle L5. Archaebacterial L5. Mammalian L11. Tetrahymena thermophila L21. Dictyostelium discoideum (Slime mold) L5 Saccharomyces cerevisiae (Baker's yeast) L16 (39A). Plant mitochondrial L5. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1IQ4_B 4A1A_D 4A1C_D 4A17_D 4A1E_D 3BBO_H 3O5H_K 1S1I_J 3O58_K 3IZS_E ....
Probab=22.88 E-value=1.2e+02 Score=16.79 Aligned_cols=21 Identities=19% Similarity=0.189 Sum_probs=15.1
Q ss_pred cEEEEccCCcccCHHHHHHHH
Q 045269 8 SLLVNIVRGGLLDYEAVAHYL 28 (99)
Q Consensus 8 ailIN~aRg~lvd~~aL~~aL 28 (99)
.+.||++-|+-.+...|..+.
T Consensus 10 KIvin~gvg~~~~~k~l~~a~ 30 (56)
T PF00281_consen 10 KIVINIGVGEAGDDKVLEKAK 30 (56)
T ss_dssp EEEEEEESSTTSSTHHHHHHH
T ss_pred EEEEECCCCccccchHHHHHH
Confidence 488999999888664444444
No 123
>PF14076 DUF4258: Domain of unknown function (DUF4258)
Probab=22.81 E-value=79 Score=17.43 Aligned_cols=19 Identities=32% Similarity=0.499 Sum_probs=16.0
Q ss_pred cCCcccCHHHHHHHHHhCCcc
Q 045269 14 VRGGLLDYEAVAHYLESGHLG 34 (99)
Q Consensus 14 aRg~lvd~~aL~~aL~~g~i~ 34 (99)
.|| |+.+.+.++|..|.+.
T Consensus 12 eR~--Is~~~I~~~l~~g~i~ 30 (73)
T PF14076_consen 12 ERG--ISEEDIEDALENGEII 30 (73)
T ss_pred hCC--CCHHHHHHHHhcCeEe
Confidence 355 8999999999999875
No 124
>cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core
Probab=22.77 E-value=1.4e+02 Score=21.89 Aligned_cols=24 Identities=21% Similarity=0.130 Sum_probs=19.6
Q ss_pred CHHHHHHHHHhCCcceEEEecCCCC
Q 045269 20 DYEAVAHYLESGHLGGLGLDVAWTE 44 (99)
Q Consensus 20 d~~aL~~aL~~g~i~gaalDV~~~E 44 (99)
..++..+||..| .+..-||||+.+
T Consensus 31 s~~~y~~aL~~G-cRcvElD~wdG~ 54 (254)
T cd08596 31 SVELYSQVLLTG-CRCVELDCWDGD 54 (254)
T ss_pred CHHHHHHHHHcC-CcEEEEEeecCC
Confidence 467899999887 567999999863
No 125
>PLN03241 magnesium chelatase subunit H; Provisional
Probab=22.77 E-value=3.2e+02 Score=25.02 Aligned_cols=61 Identities=16% Similarity=0.092 Sum_probs=40.4
Q ss_pred EEecCCCCCCCCCCccccCCceEeccCCC-------CCcHHHHHHHHHHHHHHHHHHH---cCCCCCcccc
Q 045269 37 GLDVAWTEPFDPNDPILKFQSVLITPHVG-------GVTEHSYRSTAKVVGDVALQLH---AGTPLTGIEP 97 (99)
Q Consensus 37 alDV~~~Ep~~~~~~l~~~~nvi~TPH~a-------~~t~~~~~~~~~~~~~~l~~~~---~g~~~~~~~~ 97 (99)
|||--+-+|-|..+|+++.|+|+=|=..= --|..+++...+.+-+-|.+|. .|.-+..+.+
T Consensus 921 AL~G~yI~PgpgGdp~R~~pdvLPTGRN~ya~DP~~iPT~aAw~~G~~lA~~lLe~y~~~~~G~yPe~Va~ 991 (1353)
T PLN03241 921 ALGGEYVPPAPGGDLLRDGPGVLPTGRNIHALDPYRMPSAAAWARGARVAAAIIEQHRAANDGAYPETVAV 991 (1353)
T ss_pred HhCCceeCCCCCCCcccCCCCcCCCCCcccccCcccCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCceeEE
Confidence 33444456777888999888888775432 2467777776666666777787 3777766544
No 126
>COG0044 PyrC Dihydroorotase and related cyclic amidohydrolases [Nucleotide transport and metabolism]
Probab=22.48 E-value=66 Score=25.19 Aligned_cols=33 Identities=27% Similarity=0.106 Sum_probs=25.1
Q ss_pred EEccCCcccCHHHHHHHHHhCCcceEEEecCCC
Q 045269 11 VNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWT 43 (99)
Q Consensus 11 IN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~ 43 (99)
+|--=.+--|.++|.++|++|.|-..+.|=-.+
T Consensus 275 ~nPPLR~~~dr~aL~~~l~~G~ID~iasDHaPh 307 (430)
T COG0044 275 VNPPLRDEEDREALWEALKDGVIDVIASDHAPH 307 (430)
T ss_pred ECCCCCCHHHHHHHHHHHhCCCCcEEEcCCCCC
Confidence 334344557899999999999999999885433
No 127
>PF09866 DUF2093: Uncharacterized protein conserved in bacteria (DUF2093); InterPro: IPR018661 This family of various hypothetical prokaryotic proteins has no known function.
Probab=22.26 E-value=1.1e+02 Score=16.21 Aligned_cols=24 Identities=13% Similarity=0.254 Sum_probs=19.4
Q ss_pred CCCCcEEEEccCCcccCHHHHHHH
Q 045269 4 VCTSSLLVNIVRGGLLDYEAVAHY 27 (99)
Q Consensus 4 mk~~ailIN~aRg~lvd~~aL~~a 27 (99)
+++|..++..--|+-|..++|.-+
T Consensus 2 l~pG~~V~CAVTg~~IpLd~LrYW 25 (42)
T PF09866_consen 2 LSPGSFVRCAVTGQPIPLDELRYW 25 (42)
T ss_pred ccCCCEEEEEeeCCcccHHHhccC
Confidence 578888888888998888887543
No 128
>PRK12321 cobN cobaltochelatase subunit CobN; Reviewed
Probab=22.19 E-value=3.5e+02 Score=24.20 Aligned_cols=68 Identities=16% Similarity=0.037 Sum_probs=42.7
Q ss_pred CHHHHHHHHHhCCcceEEEecCCCCCCCCCCccccCCceEeccCCCC-------CcHHHHHHHHHHHHHHHHHHH--cCC
Q 045269 20 DYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGG-------VTEHSYRSTAKVVGDVALQLH--AGT 90 (99)
Q Consensus 20 d~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a~-------~t~~~~~~~~~~~~~~l~~~~--~g~ 90 (99)
..++|++||..+-| +|-+...|.++.|+|+=|=..=. -|..+++...+.+-+-|.+|+ .|+
T Consensus 696 E~~~ll~aL~G~yV----------~pGp~G~P~Rg~~dvLPTGRNfys~Dp~~iPT~aAw~~G~~lAe~ll~~y~~e~G~ 765 (1100)
T PRK12321 696 ERAALLAALDGRRV----------APGPAGSPSRGRSDVLPTGRNLFTVDPRAVPTRAAHALGVKAAEELLRRHLQDHGD 765 (1100)
T ss_pred HHHHHHHHhCCcee----------CCCCCCCcccCCCCCCCCCCcccCcCcccCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34567777665544 56677889998888877765322 356666655555545556676 466
Q ss_pred CCCcccc
Q 045269 91 PLTGIEP 97 (99)
Q Consensus 91 ~~~~~~~ 97 (99)
-+..+.+
T Consensus 766 yPe~va~ 772 (1100)
T PRK12321 766 WPRGLVM 772 (1100)
T ss_pred CCceEEE
Confidence 6666543
No 129
>cd01096 Alkanal_monooxygenase Alkanal monooxygenase are flavin monoxygenases. Molecular oxygen is activated by reaction with reduced flavin mononucleotide (FMNH2) and reacts with an aldehyde to yield the carboxylic acid, oxidized flavin (FMN) and a blue-green light. Bacterial luciferases are heterodimers made of alpha and beta subunits which are homologous. The single activer center is on the alpha subunit. The alpha subunit has a stretch of 30 amino acid residues that is not present in the beta subunit. The beta subunit does not contain the active site and is required for the formation of the fully active heterodimer. The beta subunit does not contribute anything directly to the active site. Its role is probably to stabilize the high quantum yield conformation of the alpha subunit through interactionbs across the subunit interface.
Probab=22.04 E-value=43 Score=24.55 Aligned_cols=18 Identities=0% Similarity=-0.003 Sum_probs=13.8
Q ss_pred CCCCCCcEEEEccCCccc
Q 045269 2 SDVCTSSLLVNIVRGGLL 19 (99)
Q Consensus 2 ~~mk~~ailIN~aRg~lv 19 (99)
+.|-+|=+.++++||.--
T Consensus 94 D~lS~GR~~lGvg~G~~~ 111 (315)
T cd01096 94 DQMSKGRFILGFSDCLYD 111 (315)
T ss_pred HHHcCCCeEEEeeCCCCH
Confidence 456778889999998754
No 130
>PRK12310 hydroxylamine reductase; Provisional
Probab=21.95 E-value=85 Score=24.85 Aligned_cols=20 Identities=5% Similarity=0.061 Sum_probs=17.0
Q ss_pred HHHHHHHHHhCCcceEEEec
Q 045269 21 YEAVAHYLESGHLGGLGLDV 40 (99)
Q Consensus 21 ~~aL~~aL~~g~i~gaalDV 40 (99)
-+.|++++++|+|+|+++=+
T Consensus 265 ~~~lidaik~G~Irg~~~i~ 284 (433)
T PRK12310 265 APKIIEAVKEGKIRRFFVIA 284 (433)
T ss_pred HHHHHHHHHcCCcceEEEEE
Confidence 57799999999999987654
No 131
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=21.88 E-value=1.4e+02 Score=16.04 Aligned_cols=25 Identities=16% Similarity=0.140 Sum_probs=20.8
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHcC
Q 045269 65 GGVTEHSYRSTAKVVGDVALQLHAG 89 (99)
Q Consensus 65 a~~t~~~~~~~~~~~~~~l~~~~~g 89 (99)
.|.|.+...++++.+.+.+.+.+.-
T Consensus 10 ~grs~eqk~~l~~~it~~l~~~~~~ 34 (62)
T PRK00745 10 EGRTVEQKRKLVEEITRVTVETLGC 34 (62)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHcCC
Confidence 3679999999999999988887753
No 132
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=21.88 E-value=1.2e+02 Score=23.59 Aligned_cols=41 Identities=15% Similarity=0.219 Sum_probs=33.2
Q ss_pred CCCCCCcEEEEccCCcccCHHHHHHHHHhCCcceEEEec----CCCCCC
Q 045269 2 SDVCTSSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDV----AWTEPF 46 (99)
Q Consensus 2 ~~mk~~ailIN~aRg~lvd~~aL~~aL~~g~i~gaalDV----~~~Ep~ 46 (99)
+.+|||.++|-| +=|-+-+++-|+.+.....+-|| |+.|+.
T Consensus 225 ~~LkpGG~FIgT----iPdsd~Ii~rlr~~e~~~~gNdiykv~y~~~~~ 269 (389)
T KOG1975|consen 225 KCLKPGGVFIGT----IPDSDVIIKRLRAGEVERFGNDIYKVTYEIEFQ 269 (389)
T ss_pred hhcCCCcEEEEe----cCcHHHHHHHHHhccchhhcceeeeEeeeeecc
Confidence 468999999954 66889999999999777789999 665554
No 133
>PRK08734 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=21.83 E-value=3.3e+02 Score=19.91 Aligned_cols=22 Identities=18% Similarity=0.081 Sum_probs=19.2
Q ss_pred HHHHHHHHHhCCcceEEEecCC
Q 045269 21 YEAVAHYLESGHLGGLGLDVAW 42 (99)
Q Consensus 21 ~~aL~~aL~~g~i~gaalDV~~ 42 (99)
.-+++++|++|.+.++..|-..
T Consensus 173 ~r~li~~Lk~g~~v~~l~Dq~~ 194 (305)
T PRK08734 173 VRQLFKVLKDGGAVGILPDQQP 194 (305)
T ss_pred HHHHHHHHhcCCeEEEeCCCCC
Confidence 4689999999999999999864
No 134
>COG1576 Uncharacterized conserved protein [Function unknown]
Probab=21.59 E-value=91 Score=21.23 Aligned_cols=34 Identities=29% Similarity=0.404 Sum_probs=28.0
Q ss_pred CCCCCCcEEEEc-cCCcccCHHHHHHHHHhCCcce
Q 045269 2 SDVCTSSLLVNI-VRGGLLDYEAVAHYLESGHLGG 35 (99)
Q Consensus 2 ~~mk~~ailIN~-aRg~lvd~~aL~~aL~~g~i~g 35 (99)
+++++|+.+|.. -||...+.+++.+.|+.=+..|
T Consensus 62 ~~i~~~~~vi~Ld~~Gk~~sSe~fA~~l~~~~~~G 96 (155)
T COG1576 62 AAIPKGSYVVLLDIRGKALSSEEFADFLERLRDDG 96 (155)
T ss_pred HhcCCCCeEEEEecCCCcCChHHHHHHHHHHHhcC
Confidence 567889888888 5999999999999998755544
No 135
>TIGR00787 dctP tripartite ATP-independent periplasmic transporter solute receptor, DctP family. TRAP-T (Tripartite ATP-independent Periplasmic Transporter) family proteins generally consist of three components, and these systems have so far been found in Gram-negative bacteria, Gram-postive bacteria and archaea. The best characterized example is the DctPQM system of Rhodobacter capsulatus, a C4 dicarboxylate (malate, fumarate, succinate) transporter. This model represents the DctP family, one of at least three major families of extracytoplasmic solute receptor for TRAP family transporters. Other are the SnoM family (see pfam03480) and TAXI (TRAP-associated extracytoplasmic immunogenic) family.
Probab=21.56 E-value=2.7e+02 Score=19.54 Aligned_cols=35 Identities=14% Similarity=0.134 Sum_probs=28.1
Q ss_pred CCcEEEEc-cCCcccCHHHHHHHHHhCCcceEEEec
Q 045269 6 TSSLLVNI-VRGGLLDYEAVAHYLESGHLGGLGLDV 40 (99)
Q Consensus 6 ~~ailIN~-aRg~lvd~~aL~~aL~~g~i~gaalDV 40 (99)
.|.+-|.. ..|.+.+..+++++++.|.+-.+....
T Consensus 27 ~G~v~v~~~~~g~Lg~~~e~~~~v~~G~~d~~~~~~ 62 (257)
T TIGR00787 27 NGEIKISVFPSSQLGSDRAMLEALQGGALDMTAPSS 62 (257)
T ss_pred CCeEEEEEcCCCCCCChHHHHHHHhCCCccEEeccc
Confidence 46677776 567889999999999999988666554
No 136
>TIGR02257 cobalto_cobN cobaltochelatase, CobN subunit.
Probab=21.50 E-value=3.6e+02 Score=24.14 Aligned_cols=67 Identities=12% Similarity=-0.045 Sum_probs=42.2
Q ss_pred HHHHHHHHHhCCcceEEEecCCCCCCCCCCccccCCceEeccCCCC-------CcHHHHHHHHHHHHHHHHHHH--cCCC
Q 045269 21 YEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGG-------VTEHSYRSTAKVVGDVALQLH--AGTP 91 (99)
Q Consensus 21 ~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a~-------~t~~~~~~~~~~~~~~l~~~~--~g~~ 91 (99)
.++|++||..+-| +|-|...|.+..|+|+=|=..=. -|..+++...+.+-+-|.+|+ .|+-
T Consensus 711 ~~~ll~aL~G~yV----------~pGp~G~P~Rg~pdvLPTGRNfys~Dpr~iPT~aAw~~G~~lAe~ll~~y~~ehG~y 780 (1122)
T TIGR02257 711 IAGLLAGLNGRYV----------SAGPSGAPTRGRPDVLPTGRNFYSVDLRGLPTPAAWDLGKKSAEQLIERYLQDHGDW 780 (1122)
T ss_pred HHHHHHHhCCcee----------CCCCCCCcccCCCCCCCCCCcccccCcccCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 4566666655544 67678889998888887765332 356666655555555666676 4666
Q ss_pred CCcccc
Q 045269 92 LTGIEP 97 (99)
Q Consensus 92 ~~~~~~ 97 (99)
+..+.+
T Consensus 781 Pe~va~ 786 (1122)
T TIGR02257 781 PRSLAL 786 (1122)
T ss_pred CceEEE
Confidence 666543
No 137
>PRK05989 cobN cobaltochelatase subunit CobN; Reviewed
Probab=21.48 E-value=3.6e+02 Score=24.43 Aligned_cols=61 Identities=18% Similarity=0.101 Sum_probs=38.7
Q ss_pred EEecCCCCCCCCCCccccCCceEeccCCCC-------CcHHHHHHHHHHHHHHHHHHH--cCCCCCcccc
Q 045269 37 GLDVAWTEPFDPNDPILKFQSVLITPHVGG-------VTEHSYRSTAKVVGDVALQLH--AGTPLTGIEP 97 (99)
Q Consensus 37 alDV~~~Ep~~~~~~l~~~~nvi~TPH~a~-------~t~~~~~~~~~~~~~~l~~~~--~g~~~~~~~~ 97 (99)
|||--+-+|-|...|.+..|+|+=|=..=. -|..+++...+.+-+-|.+|. .|+-+..+.+
T Consensus 823 aL~G~yI~pGpgGdP~Rg~pdvLPTGRNfys~Dp~~iPT~aAw~~G~~lA~~ll~~y~~e~G~yPe~va~ 892 (1244)
T PRK05989 823 GLDGRFVPPGPSGAPTRGRPDVLPTGRNFYSVDPRAVPTRAAWELGQKLAEQLLERYLQEHGEYPRSVGL 892 (1244)
T ss_pred HhCCcccCCCCCCccccCCCCCCCCCCcccCcCcccCCCHHHHHHHHHHHHHHHHHHHHhcCCCCceeEE
Confidence 444445577778899998888887765322 366677665555555666666 3666666543
No 138
>PRK02382 dihydroorotase; Provisional
Probab=21.46 E-value=80 Score=24.33 Aligned_cols=33 Identities=21% Similarity=0.056 Sum_probs=25.0
Q ss_pred EEccCCcccCHHHHHHHHHhCCcceEEEecCCC
Q 045269 11 VNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWT 43 (99)
Q Consensus 11 IN~aRg~lvd~~aL~~aL~~g~i~gaalDV~~~ 43 (99)
+|--=..--|.++|.++|++|.+-..+.|-...
T Consensus 274 ~~PPlr~~~d~~aL~~~l~~g~i~~i~sDh~P~ 306 (443)
T PRK02382 274 MNPPLRSEKRREALWERLNDGTIDVVASDHAPH 306 (443)
T ss_pred EcCCCCChHHHHHHHHHHhCCCCCEEEcCCCCC
Confidence 444333446889999999999999999887544
No 139
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=21.26 E-value=42 Score=25.91 Aligned_cols=18 Identities=11% Similarity=0.135 Sum_probs=15.3
Q ss_pred CCCCCCCcEEEEccCCcc
Q 045269 1 MSDVCTSSLLVNIVRGGL 18 (99)
Q Consensus 1 l~~mk~~ailIN~aRg~l 18 (99)
|.+||+++|+-|++.-.+
T Consensus 288 ~~~mk~d~IvCN~Ghfd~ 305 (434)
T KOG1370|consen 288 FDQMKNDAIVCNIGHFDT 305 (434)
T ss_pred HHhCcCCcEEeccccccc
Confidence 578999999999987654
No 140
>PRK08417 dihydroorotase; Provisional
Probab=21.17 E-value=73 Score=24.14 Aligned_cols=25 Identities=20% Similarity=0.018 Sum_probs=21.1
Q ss_pred cCHHHHHHHHHhCCcceEEEecCCC
Q 045269 19 LDYEAVAHYLESGHLGGLGLDVAWT 43 (99)
Q Consensus 19 vd~~aL~~aL~~g~i~gaalDV~~~ 43 (99)
=|.++|.++|++|.|--.+.|=-..
T Consensus 255 ~d~~~L~~~l~~g~Id~i~SDHaP~ 279 (386)
T PRK08417 255 EDRLALLEALKEGKIDFLTSLHSAK 279 (386)
T ss_pred HHHHHHHHHHhcCCceEEEcCCCCC
Confidence 5789999999999998888886543
No 141
>cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=21.11 E-value=1.6e+02 Score=21.68 Aligned_cols=66 Identities=12% Similarity=0.087 Sum_probs=38.9
Q ss_pred CHHHHHHHHHhCCcceEEEecCCCC---CCC-----CCCc--c------------ccC-CceEeccCCCCCcHHHHHHHH
Q 045269 20 DYEAVAHYLESGHLGGLGLDVAWTE---PFD-----PNDP--I------------LKF-QSVLITPHVGGVTEHSYRSTA 76 (99)
Q Consensus 20 d~~aL~~aL~~g~i~gaalDV~~~E---p~~-----~~~~--l------------~~~-~nvi~TPH~a~~t~~~~~~~~ 76 (99)
..++..+||+.| .+..-+|||+.+ |.- ..++ + ... ==||+|=..- .+.+-+..++
T Consensus 31 s~e~y~~aL~~G-cRcvElD~Wdg~~~eP~V~HG~Tlts~i~f~dv~~aI~~~AF~~S~yPvIlSlE~H-cs~~qQ~~ma 108 (253)
T cd08632 31 KVDMYARVLQAG-CRCVEVDCWDGPDGEPVVHHGYTLTSKITFRDVIETINKYAFVKNEFPVILSIENH-CSIQQQKKIA 108 (253)
T ss_pred cHHHHHHHHHcC-CcEEEEEeecCCCCCcEEeeCCCCccCcCHHHHHHHHHHHhccCCCCCEEEEeccc-CCHHHHHHHH
Confidence 467899999888 567999999863 430 0011 1 000 1234443211 2456677777
Q ss_pred HHHHHHHHHHH
Q 045269 77 KVVGDVALQLH 87 (99)
Q Consensus 77 ~~~~~~l~~~~ 87 (99)
+.+.+.+-..+
T Consensus 109 ~~l~~~lGd~L 119 (253)
T cd08632 109 QYLKEIFGDKL 119 (253)
T ss_pred HHHHHHHhhhh
Confidence 77777777666
No 142
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=20.97 E-value=92 Score=17.85 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=18.0
Q ss_pred EEEEccCCcccCHHHHHHHHHhC
Q 045269 9 LLVNIVRGGLLDYEAVAHYLESG 31 (99)
Q Consensus 9 ilIN~aRg~lvd~~aL~~aL~~g 31 (99)
++||.+|..=++..+|+.+|.+.
T Consensus 3 l~in~Gr~dg~~~~~iv~~i~~~ 25 (74)
T PF03880_consen 3 LFINVGRKDGLTPRDIVGAICNE 25 (74)
T ss_dssp EEES-SGGGT--HHHHHHHHHTC
T ss_pred EEEEcccccCCCHHHHHHHHHhc
Confidence 68999999999999999999764
No 143
>cd06150 YjgF_YER057c_UK114_like_2 This group of proteins belong to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function. The conserved domain is similar in structure to chorismate mutase but there is no sequence similarity and no functional connection. Members of this family have been implicated in isoleucine (Yeo7, Ibm1, aldR) and purine (YjgF) biosynthesis, as well as threonine anaerobic degradation (tdcF) and mitochondrial DNA maintenance (Ibm1). This domain homotrimerizes forming a distinct intersubunit cavity that may serve as a small molecule binding site.
Probab=20.73 E-value=77 Score=19.28 Aligned_cols=37 Identities=19% Similarity=0.104 Sum_probs=20.3
Q ss_pred eccCCCCCcHHHHHHHHHHHHHHHHHHHc--CCCCCccc
Q 045269 60 ITPHVGGVTEHSYRSTAKVVGDVALQLHA--GTPLTGIE 96 (99)
Q Consensus 60 ~TPH~a~~t~~~~~~~~~~~~~~l~~~~~--g~~~~~~~ 96 (99)
++-.++..+......-.+.+.+||...++ |..+.+++
T Consensus 15 iSGq~~~~~~~~~~~Q~~~~~~nl~~~L~~~G~~~~dvv 53 (105)
T cd06150 15 LAGQVADDTSADITGQTRQVLAKIDALLAEAGSDKSRIL 53 (105)
T ss_pred EeCcCCcCCCCCHHHHHHHHHHHHHHHHHHcCCCHHHEE
Confidence 33344433223455566677888888774 44555544
No 144
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=20.72 E-value=2.9e+02 Score=21.68 Aligned_cols=47 Identities=17% Similarity=0.157 Sum_probs=30.4
Q ss_pred cCCcccCHHHHHHHHHhCCcceEEEecCCCCCCCCCCccccCCceEeccCCCC---CcHHHHHHHHHHHHH
Q 045269 14 VRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGG---VTEHSYRSTAKVVGD 81 (99)
Q Consensus 14 aRg~lvd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~l~~~~nvi~TPH~a~---~t~~~~~~~~~~~~~ 81 (99)
..+-.+|-++|.+++.+++..- =++|.||.-. +|.+....+.+.+.+
T Consensus 140 ~~~y~iD~~~LE~~~~~~~vkl---------------------~iLCnPHNP~Grvwt~eeL~~i~elc~k 189 (388)
T COG1168 140 DGRYEIDFDALEKAFVDERVKL---------------------FILCNPHNPTGRVWTKEELRKIAELCLR 189 (388)
T ss_pred CCcEEecHHHHHHHHhcCCccE---------------------EEEeCCCCCCCccccHHHHHHHHHHHHH
Confidence 3444567777777777665321 1568888764 678888877766654
No 145
>PRK08943 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated
Probab=20.69 E-value=3.5e+02 Score=19.81 Aligned_cols=22 Identities=14% Similarity=0.028 Sum_probs=18.9
Q ss_pred HHHHHHHHHhCCcceEEEecCC
Q 045269 21 YEAVAHYLESGHLGGLGLDVAW 42 (99)
Q Consensus 21 ~~aL~~aL~~g~i~gaalDV~~ 42 (99)
.-.++++|++|.+.|...|-..
T Consensus 191 ~r~i~kaLk~g~~v~il~Dq~~ 212 (314)
T PRK08943 191 IKPFISSVRQGYWGYYLPDEDH 212 (314)
T ss_pred HHHHHHHHhCCCeEEEeCCCCC
Confidence 4578999999999999999764
No 146
>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=20.68 E-value=49 Score=26.21 Aligned_cols=54 Identities=15% Similarity=0.207 Sum_probs=29.7
Q ss_pred EEecCCCCCC----CCCCccccCCce--EeccCC----------CCCcHH---HHHHHHHHHHHHHHHHHcCC
Q 045269 37 GLDVAWTEPF----DPNDPILKFQSV--LITPHV----------GGVTEH---SYRSTAKVVGDVALQLHAGT 90 (99)
Q Consensus 37 alDV~~~Ep~----~~~~~l~~~~nv--i~TPH~----------a~~t~~---~~~~~~~~~~~~l~~~~~g~ 90 (99)
.+|=|++||+ ++++|+.+.|-+ .++||+ |..... ..+++-+.+...++.|=.|.
T Consensus 56 Liedw~PEPLV~~~~~~~~~~~~~v~e~~~~~~~~i~G~~~~N~aS~NfL~l~~~~~ike~a~~~lrkyGvGs 128 (467)
T KOG1358|consen 56 LIEDWEPEPLVPPVPEDHPVLNTPVLESVMLPHVTIDGKDVLNFASANFLGLIENEEIKEEASFTLRKYGVGS 128 (467)
T ss_pred HHhcCCCCCCCCCCcccccccCCcccccccCCceEecCceeecccchhhhhhcccHHHHHHHHHHHHHhCCCC
Confidence 3577999987 455666653321 344553 222111 22566666777777775554
No 147
>PLN02599 dihydroorotase
Probab=20.65 E-value=75 Score=24.25 Aligned_cols=26 Identities=31% Similarity=0.128 Sum_probs=20.9
Q ss_pred ccCHHHHHHHHHhCCc-ceEEEecCCC
Q 045269 18 LLDYEAVAHYLESGHL-GGLGLDVAWT 43 (99)
Q Consensus 18 lvd~~aL~~aL~~g~i-~gaalDV~~~ 43 (99)
--|.++|.+++.+|.+ ...+.|=-..
T Consensus 245 ~~dr~aL~~al~~G~i~~~i~SDHaPh 271 (364)
T PLN02599 245 EIHREALVKAATSGSKKFFLGTDSAPH 271 (364)
T ss_pred HHHHHHHHHHHHcCCCCEEEecCCCCC
Confidence 4578999999999996 6688886544
No 148
>PRK13713 conjugal transfer protein TraM; Provisional
Probab=20.63 E-value=99 Score=20.12 Aligned_cols=29 Identities=17% Similarity=0.409 Sum_probs=17.8
Q ss_pred EeccCCCCCcHHHHHHHHHHH----HHHHHHHH
Q 045269 59 LITPHVGGVTEHSYRSTAKVV----GDVALQLH 87 (99)
Q Consensus 59 i~TPH~a~~t~~~~~~~~~~~----~~~l~~~~ 87 (99)
-++||+++.....+..+...+ .+.+..|+
T Consensus 82 ~lsp~v~~~~~~ey~~mv~~I~~~v~e~m~~FF 114 (118)
T PRK13713 82 SLSPHVSGNPKFEYANMVEDIREKVSEEMERFF 114 (118)
T ss_pred cccHhhcCCCcccHHHHHHHHHHHHHHHHHhcC
Confidence 478999998875555544433 34444444
No 149
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane. The protein components of these traffic systems include one or two transmembrane protein components, one or two membrane-associated ATP-binding proteins (ABC transporters; see IPR003439 from INTERPRO) and a high affinity periplasmic solute-binding protein. The latter are thought to bind the substrate in the vicinity of the inner membrane, and to transfer it to a complex of inner membrane proteins for concentration into the cytoplasm. In Gram-positive bacteria which are surrounded by a single membrane and have therefore no periplasmic region, the equivalent proteins are bound to the membrane via an N-terminal lipid anchor. These homologue proteins do not play an integral role in the transport process per se, but probably serve as receptors to trigger or initiate translocation of the solute throught the membrane by binding to external sites of the integral membrane proteins of the efflux system. In addition, at least some solute-binding proteins function in the initiation of sensory transduction pathways. On the basis of sequence similarities, the vast majority of these solute-binding proteins can be grouped [] into eight families or clusters, which generally correlate with the nature of the solute bound. Family 3 groups together specific amino acids and opine-binding periplasmic proteins and a periplasmic homologue with catalytic activity.; GO: 0005215 transporter activity, 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 3N26_A 3QAX_A 3I6V_A 2VHA_B 2IA4_B 2Q89_A 2Q88_A 2YJP_C 1II5_A 1IIW_A ....
Probab=20.62 E-value=1.4e+02 Score=19.39 Aligned_cols=24 Identities=21% Similarity=0.184 Sum_probs=20.5
Q ss_pred ccCHHHHHHHHHhCCcceEEEecC
Q 045269 18 LLDYEAVAHYLESGHLGGLGLDVA 41 (99)
Q Consensus 18 lvd~~aL~~aL~~g~i~gaalDV~ 41 (99)
.-+.++++++|.+|++-++..|..
T Consensus 138 ~~~~~~~~~~l~~g~~d~~i~~~~ 161 (225)
T PF00497_consen 138 VDSPEEALEALLSGRIDAFIVDES 161 (225)
T ss_dssp ESSHHHHHHHHHTTSSSEEEEEHH
T ss_pred cccHHHHHHHHhcCCeeeeeccch
Confidence 358889999999999998888865
No 150
>PF07994 NAD_binding_5: Myo-inositol-1-phosphate synthase; InterPro: IPR002587 1L-myo-Inositol-1-phosphate synthase (5.5.1.4 from EC) catalyzes the conversion of D-glucose 6-phosphate to 1L-myo-inositol-1-phosphate, the first committed step in the production of all inositol-containing compounds, including phospholipids, either directly or by salvage. The enzyme exists in a cytoplasmic form in a wide range of plants, animals, and fungi. It has also been detected in several bacteria and a chloroplast form is observed in alga and higher plants. Inositol phosphates play an important role in signal transduction. In Saccharomyces cerevisiae (Baker's yeast), the transcriptional regulation of the INO1 gene has been studied in detail [] and its expression is sensitive to the availability of phospholipid precursors as well as growth phase. The regulation of the structural gene encoding 1L-myo-inositol-1-phosphate synthase has also been analyzed at the transcriptional level in the aquatic angiosperm, Spirodela polyrrhiza (Giant duckweed) and the halophyte, Mesembryanthemum crystallinum (Common ice plant) [].; GO: 0004512 inositol-3-phosphate synthase activity, 0006021 inositol biosynthetic process, 0008654 phospholipid biosynthetic process; PDB: 1GR0_A 1P1K_B 1LA2_B 1RM0_B 1P1I_B 1JKF_A 1P1F_A 1P1J_B 1JKI_B 1P1H_A ....
Probab=20.49 E-value=58 Score=24.27 Aligned_cols=30 Identities=17% Similarity=0.168 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcccccC
Q 045269 70 HSYRSTAKVVGDVALQLHAGTPLTGIEPVN 99 (99)
Q Consensus 70 ~~~~~~~~~~~~~l~~~~~g~~~~~~~~~n 99 (99)
+......+.+.++|++|++...+..+|+||
T Consensus 125 ~~~~~~~e~~~~DI~~f~~~~~~d~vVvvn 154 (295)
T PF07994_consen 125 ESKREQVEQIREDIRDFKKENGLDRVVVVN 154 (295)
T ss_dssp STHHHHHHHHHHHHHHHHHHTT-SCEEEEE
T ss_pred cchHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 355777888999999999998888888776
No 151
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=20.25 E-value=3.4e+02 Score=19.57 Aligned_cols=69 Identities=14% Similarity=0.216 Sum_probs=40.9
Q ss_pred cCHHHHHHHHHhCCcceEEEecCCCC---CCCC-----CC--cc------------ccCC-ceEe--ccCCCCCcHHHHH
Q 045269 19 LDYEAVAHYLESGHLGGLGLDVAWTE---PFDP-----ND--PI------------LKFQ-SVLI--TPHVGGVTEHSYR 73 (99)
Q Consensus 19 vd~~aL~~aL~~g~i~gaalDV~~~E---p~~~-----~~--~l------------~~~~-nvi~--TPH~a~~t~~~~~ 73 (99)
=..++..+||+.| .+..-||||+.+ |.-- .. ++ ...+ =||+ -.| .+.+-+.
T Consensus 30 ss~~~y~~aL~~G-cRcvElD~wdg~~~ep~V~HG~t~ts~i~f~dv~~~Ik~~aF~~s~yPvILslE~H---cs~~qQ~ 105 (231)
T cd08598 30 SSVEGYIRALQRG-CRCVEIDVWDGDDGEPVVTHGYTLTSSVPFRDVCRAIKKYAFVTSPYPLILSLEVH---CDAEQQE 105 (231)
T ss_pred cCHHHHHHHHHhC-CcEEEEEeecCCCCCcEEeeCCCCcCceEHHHHHHHHHHHhccCCCCCEEEEEecC---CCHHHHH
Confidence 3567999999988 556999999864 4200 00 00 0001 1333 346 3467777
Q ss_pred HHHHHHHHHHHHHHcCCC
Q 045269 74 STAKVVGDVALQLHAGTP 91 (99)
Q Consensus 74 ~~~~~~~~~l~~~~~g~~ 91 (99)
.+++.+.+.+-..+--.+
T Consensus 106 ~ma~~l~~~lG~~L~~~~ 123 (231)
T cd08598 106 RMVEIMKETFGDLLVTEP 123 (231)
T ss_pred HHHHHHHHHHHHHhcCCC
Confidence 787777777777664333
No 152
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=20.19 E-value=4.9e+02 Score=21.31 Aligned_cols=72 Identities=13% Similarity=-0.002 Sum_probs=42.2
Q ss_pred HHHHHHHHHhCCcceEEEecCCC-C----CC-------CC---------CCccc---c---CC----ceEeccCCCC--C
Q 045269 21 YEAVAHYLESGHLGGLGLDVAWT-E----PF-------DP---------NDPIL---K---FQ----SVLITPHVGG--V 67 (99)
Q Consensus 21 ~~aL~~aL~~g~i~gaalDV~~~-E----p~-------~~---------~~~l~---~---~~----nvi~TPH~a~--~ 67 (99)
.-.+.++|++|.+.|+..|-... + |+ +. +.|+. . -. .+.+.|...+ .
T Consensus 535 ~r~i~~aLk~g~~v~il~Dq~~~~~~~~v~FfG~~a~~~~g~~~lA~~~~~pvv~~~~~~~~~~~~y~l~~~~~~~~~~~ 614 (656)
T PRK15174 535 VRACMQTLHSGQSLVVAIDGALNLSAPTIDFFGQQITYSTFCSRLAWKMHLPTVFSVPIWKNRHIHFVLERMVDPLKFES 614 (656)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCCCCCceeccCCCccCcCcHHHHHHHHHCCCEEEeEEEEecCceeEEEEecCCCccchh
Confidence 34799999999999999887632 1 11 00 00111 0 01 2334555555 2
Q ss_pred cHHHHHHHHHHHHHHHHHHHcCCCC
Q 045269 68 TEHSYRSTAKVVGDVALQLHAGTPL 92 (99)
Q Consensus 68 t~~~~~~~~~~~~~~l~~~~~g~~~ 92 (99)
..+...++.+...+.|+++++..|.
T Consensus 615 ~~~~~~~~~~~y~~~l~~~~~~~P~ 639 (656)
T PRK15174 615 QLSFTERWKENYLQCVTRILQSDPE 639 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcChh
Confidence 3555667777777888888776543
No 153
>cd01914 HCP Hybrid cluster protein (HCP), formerly known as prismane, is thought to play a role in nitrogen metabolism but its specific function is unknown. HCP has three structural domains, an N-terminal alpha-helical domain, and two similar domains comprising a central beta-sheet flanked by alpha-helices. HCP contains two iron-sulfur clusters, one of which is a [Fe4-S4] cubane cluster similar to that of carbon monoxide dehydrogenase (CODH). The second cluster, referred to as the hybrid cluster, is a hybrid [Fe4-S2-O2] center located at the interface of the three domains. Although the hybrid cluster is buried within the protein, it is accessible through a large hydrophobic cavity.
Probab=20.14 E-value=98 Score=24.43 Aligned_cols=20 Identities=15% Similarity=0.119 Sum_probs=17.0
Q ss_pred HHHHHHHHHhCCcceEEEec
Q 045269 21 YEAVAHYLESGHLGGLGLDV 40 (99)
Q Consensus 21 ~~aL~~aL~~g~i~gaalDV 40 (99)
-+.|++++++|+|+|+.+=+
T Consensus 259 ~~~l~~aik~G~Ir~~~~i~ 278 (423)
T cd01914 259 ADKVVEAVKSGKIRHFFVVG 278 (423)
T ss_pred HHHHHHHHHcCCcceEEEEE
Confidence 56799999999999977654
No 154
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=20.08 E-value=46 Score=26.08 Aligned_cols=34 Identities=12% Similarity=0.211 Sum_probs=23.5
Q ss_pred CCCCCCCcEEEEccCCcc-cCHHHHHHH-HHhCCcc
Q 045269 1 MSDVCTSSLLVNIVRGGL-LDYEAVAHY-LESGHLG 34 (99)
Q Consensus 1 l~~mk~~ailIN~aRg~l-vd~~aL~~a-L~~g~i~ 34 (99)
|..||+|+++-|.++=.. ||..+|.+. ++...++
T Consensus 283 ~~~MkDgaIl~N~GHFd~EI~~~~L~~~~~~~~~vr 318 (420)
T COG0499 283 FEKMKDGAILANAGHFDVEIDVAGLEELAVEKREVR 318 (420)
T ss_pred HHhccCCeEEecccccceeccHHHHHHhhhhHhccc
Confidence 468999999999996554 677776643 3334443
Done!