RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 045269
(99 letters)
>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural
genomics, PSI-2, P structure initiative; 1.90A
{Ralstonia solanacearum}
Length = 352
Score = 79.2 bits (196), Expect = 3e-19
Identities = 23/85 (27%), Positives = 37/85 (43%)
Query: 7 SSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGG 66
++L VN R L++ + L G G +DV TEP +L+ ++ + TPH+G
Sbjct: 244 TALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPHIGY 303
Query: 67 VTEHSYRSTAKVVGDVALQLHAGTP 91
V SY + L + G
Sbjct: 304 VERESYEMYFGIAFQNILDILQGNV 328
>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum
aerophilum} SCOP: c.2.1.4 c.23.12.1
Length = 303
Score = 75.3 bits (186), Expect = 4e-18
Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 4/94 (4%)
Query: 7 SSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAW-TEPFDPNDPILKFQSVLITPHVG 65
++ VN+ R +LD + V L+ DV W F + +V+ TP V
Sbjct: 203 DAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVA 262
Query: 66 GVTEHSYRSTAKVVGDVALQLHAGTPLTGIEPVN 99
G + R ++V + L TG P N
Sbjct: 263 GGY-GNERVWRQMVMEAVRNLITY--ATGGRPRN 293
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein
structure initiative; 2.20A {Lactobacillus plantarum}
Length = 324
Score = 75.4 bits (186), Expect = 5e-18
Identities = 26/90 (28%), Positives = 39/90 (43%), Gaps = 1/90 (1%)
Query: 7 SSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGG 66
+L+NI RG +D A+ L+ L LDV EP + P+ + VLITPH+ G
Sbjct: 220 QPMLINIGRGPAVDTTALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPHISG 279
Query: 67 VTEHSYRSTAKVVGD-VALQLHAGTPLTGI 95
H + + A + GT +
Sbjct: 280 QIAHFRATVFPIFAANFAQFVKDGTLVRNQ 309
>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD,
oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana}
PDB: 3n7u_A* 3naq_A
Length = 351
Score = 69.6 bits (171), Expect = 8e-16
Identities = 21/60 (35%), Positives = 32/60 (53%)
Query: 10 LVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGGVTE 69
+VN RG +++ +AV +ESGH+GG DV +P + P + +TPH G T
Sbjct: 252 IVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTI 311
>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein,
phosphorylation, transcriptional corepresso
transcription repressor; HET: NAD; 1.95A {Homo sapiens}
SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A*
3ga0_A 2ome_A*
Length = 347
Score = 69.2 bits (170), Expect = 1e-15
Identities = 27/92 (29%), Positives = 45/92 (48%), Gaps = 2/92 (2%)
Query: 10 LVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPND-PILKFQSVLITPHVGGVT 68
LVN RGGL+D +A+A L+ G + G LDV +EPF + P+ +++ TPH +
Sbjct: 255 LVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYS 314
Query: 69 EHSYRSTA-KVVGDVALQLHAGTPLTGIEPVN 99
E + + ++ + P + VN
Sbjct: 315 EQASIEMREEAAREIRRAITGRIPDSLKNCVN 346
>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center
for structural genomics of infec diseases, csgid; 2.10A
{Salmonella enterica subsp} PDB: 3kbo_A
Length = 315
Score = 68.5 bits (168), Expect = 2e-15
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 2/89 (2%)
Query: 7 SSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGG 66
+ ++N+ RG + + L+SG L G LDV EP P+ + V +TPH+
Sbjct: 222 GAYVLNLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPHIAA 281
Query: 67 VTEHSYRSTAKVVGDVALQLHAGTPLTGI 95
VT + QL G P+TG
Sbjct: 282 VT--RPAEAIDYISRTITQLEKGEPVTGQ 308
>2nac_A NAD-dependent formate dehydrogenase;
oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas
SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A*
2gsd_A* 3fn4_A
Length = 393
Score = 68.9 bits (169), Expect = 2e-15
Identities = 24/63 (38%), Positives = 32/63 (50%)
Query: 7 SSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGG 66
+ +VN RG L D +AVA LESG L G DV + +P + P +TPH+ G
Sbjct: 276 GAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISG 335
Query: 67 VTE 69
T
Sbjct: 336 TTL 338
>1wwk_A Phosphoglycerate dehydrogenase; riken structural
genomics/proteomics initiative, RSGI, structural
genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus
horikoshii}
Length = 307
Score = 67.9 bits (167), Expect = 3e-15
Identities = 24/60 (40%), Positives = 36/60 (60%)
Query: 10 LVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGGVTE 69
L+N RG ++D A+ L+ G + G GLDV EP + P+ KF +V++TPH+G T
Sbjct: 228 LINTSRGPVVDTNALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTV 287
>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein;
structural genomics; 1.80A {Aeromonas salmonicida subsp}
Length = 324
Score = 67.3 bits (165), Expect = 4e-15
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 2/89 (2%)
Query: 7 SSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGG 66
++L N+ RG ++ + L +G LG LDV EP + P+ +++ITPH
Sbjct: 223 GAILFNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPHNSA 282
Query: 67 VTEHSYRSTAKVVGDVALQLHAGTPLTGI 95
+ A++ ++ G PL G
Sbjct: 283 YS--FPDDVAQIFVRNYIRFIDGQPLDGK 309
>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J,
structural genomics, protein structure initiative; 2.20A
{Thermoplasma acidophilum}
Length = 290
Score = 65.3 bits (160), Expect = 3e-14
Identities = 14/79 (17%), Positives = 30/79 (37%), Gaps = 6/79 (7%)
Query: 7 SSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGG 66
+ +VN+ R ++ + +L+ DV W EP ++ +++PHV G
Sbjct: 202 NLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPEITETN---LRNAILSPHVAG 258
Query: 67 VTEHSYRSTAKVVGDVALQ 85
+ +A +
Sbjct: 259 GMS---GEIMDIAIQLAFE 274
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase,
oxidoreductase; 1.85A {Rhodotorula graminis} PDB:
2w2l_A* 2w2l_D* 2w2k_B
Length = 348
Score = 65.0 bits (159), Expect = 4e-14
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 7 SSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGG 66
S +VN RG ++ +A+ L+SG L GLDV EP + +++ + V +T H+GG
Sbjct: 249 GSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEP-QVSKELIEMKHVTLTTHIGG 307
Query: 67 VTEHSYRSTAKVVGD-VALQLHAGTPLTGIEPVN 99
V ++ ++ + L G PL + P
Sbjct: 308 VAIETFHEFERLTMTNIDRFLLQGKPL--LTPAG 339
>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA,
national project on protein structural and functional
analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}
Length = 313
Score = 64.5 bits (158), Expect = 4e-14
Identities = 18/62 (29%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 10 LVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEP--FDPNDPILKFQSVLITPHVGGV 67
+VN R ++ +A+ Y++ G + DV W EP + +LK + V++T H+G
Sbjct: 228 IVNTSRAVAVNGKALLDYIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQ 287
Query: 68 TE 69
T+
Sbjct: 288 TK 289
>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid
dehydrogenase, cofactor regenerator, yeast, CBFDH; HET:
PG4; 1.55A {Candida boidinii} PDB: 2fss_A
Length = 364
Score = 64.3 bits (157), Expect = 7e-14
Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 10 LVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVL-----ITPHV 64
LVN RG + E VA LESG L G G DV + +P + P ++ +TPH
Sbjct: 253 LVNTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHY 312
Query: 65 GGVTE 69
G T
Sbjct: 313 SGTTL 317
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle
structural genomics center for infect disease,
brucellosis; 2.15A {Brucella melitensis biovar abortus}
Length = 416
Score = 63.8 bits (156), Expect = 1e-13
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 8 SLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPND----PILKFQSVLITPH 63
+ L+N RG +D EA+A L+ GHL G +DV EP + P+ ++V++TPH
Sbjct: 238 AFLINNARGSDVDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPH 297
Query: 64 VGGVTE 69
+GG TE
Sbjct: 298 IGGSTE 303
>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann
fold, formate/glycerate dehydrogenase substr binding
domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens}
PDB: 2wwr_A 2h1s_A 2q50_A
Length = 330
Score = 63.4 bits (155), Expect = 1e-13
Identities = 20/59 (33%), Positives = 35/59 (59%)
Query: 7 SSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVG 65
+++ +NI RG +++ + + L SG + GLDV EP N P+L ++ +I PH+G
Sbjct: 239 TAVFINISRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIG 297
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation
phosphoglycerate dehydrogenase PGDH, oxidoreductase;
HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4
c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A*
2pa3_A* 2p9g_A*
Length = 404
Score = 63.8 bits (156), Expect = 1e-13
Identities = 30/66 (45%), Positives = 42/66 (63%), Gaps = 4/66 (6%)
Query: 8 SLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPND----PILKFQSVLITPH 63
SLL+N RG ++D A+A L S HL G +DV TEP +D P+ +F +VL+TPH
Sbjct: 227 SLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPH 286
Query: 64 VGGVTE 69
+GG T+
Sbjct: 287 IGGSTQ 292
>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase,
phosphoglycerate dehydrogenase deficiency, S metabolism,
2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo
sapiens}
Length = 335
Score = 63.4 bits (155), Expect = 2e-13
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 10 LVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGGVTE 69
+VN RGG++D A+ L+SG G LDV EP + ++ ++V+ PH+G T+
Sbjct: 251 VVNCARGGIVDEGALLRALQSGQCAGAALDVFTEEP-PRDRALVDHENVISCPHLGASTK 309
Query: 70 HSYRSTAKVVGDVALQLHAGTPLTGI 95
+ + + + + G LTG+
Sbjct: 310 EAQSRCGEEIAVQFVDMVKGKSLTGV 335
>2pi1_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, 3D-structure,
structural genomics, NPPSFA; HET: MSE NAD; 2.12A
{Aquifex aeolicus VF5} PDB: 3kb6_A*
Length = 334
Score = 63.0 bits (154), Expect = 2e-13
Identities = 23/98 (23%), Positives = 35/98 (35%), Gaps = 15/98 (15%)
Query: 9 LLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEP---------------FDPNDPIL 53
L+N RG ++D +A+ + G GLGLDV E +
Sbjct: 225 YLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDKNLKILELA 284
Query: 54 KFQSVLITPHVGGVTEHSYRSTAKVVGDVALQLHAGTP 91
+V+ITPH+ T+ S + V G
Sbjct: 285 CKDNVIITPHIAYYTDKSLERIREETVKVVKAFVKGDL 322
>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project
protein structural and functional analyses; 1.95A
{Pyrococcus horikoshii}
Length = 333
Score = 63.0 bits (154), Expect = 2e-13
Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 4/94 (4%)
Query: 7 SSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGG 66
LVNI RG L+D +AV ++ G L G DV EP ++ ++TPH G
Sbjct: 228 GKYLVNIGRGALVDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAG 287
Query: 67 VT-EHSYRSTAKVVGDVALQLHAGTPLTGIEPVN 99
+ E + V ++ L P VN
Sbjct: 288 LALEAQEDVGFRAVENLLKVLRGEVPED---LVN 318
>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc,
oxidoreductase; 2.50A {Sinorhizobium meliloti}
Length = 340
Score = 62.6 bits (153), Expect = 3e-13
Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
Query: 7 SSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGG 66
++VN+ RG ++D +A+ L+SG + G GLDV EP + ++ PH G
Sbjct: 251 EGIVVNVARGNVVDEDALIEALKSGTIAGAGLDVFVNEP-AIRSEFHTTPNTVLMPHQGS 309
Query: 67 VTEHSYRSTAKVVGDVALQLHAGTPLTGIEPVN 99
T + + K+V AG VN
Sbjct: 310 ATVETRMAMGKLVLANLAAHFAGEKA--PNTVN 340
>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase,
reversible interconversion of pyruvate INTO D-lactate;
1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4
c.23.12.1 PDB: 1j49_A* 2dld_A*
Length = 333
Score = 62.2 bits (152), Expect = 4e-13
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 13/97 (13%)
Query: 9 LLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPF-------------DPNDPILKF 55
++VN+ RG L+D +AV L+SG + G +DV E ++
Sbjct: 230 VIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIAR 289
Query: 56 QSVLITPHVGGVTEHSYRSTAKVVGDVALQLHAGTPL 92
+VL+TP T H+ R+ D L+L G
Sbjct: 290 PNVLVTPKTAFYTTHAVRNMVVKAFDNNLELVEGKEA 326
>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate
dehydrogenase, D-lactate dehydrogenas oxidoreductase;
HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4
c.23.12.1
Length = 333
Score = 61.1 bits (149), Expect = 8e-13
Identities = 20/98 (20%), Positives = 39/98 (39%), Gaps = 13/98 (13%)
Query: 9 LLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEP-------------FDPNDPILKF 55
+++N R L+D +A+ L+SG L G+G+D E D +L
Sbjct: 228 IVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGM 287
Query: 56 QSVLITPHVGGVTEHSYRSTAKVVGDVALQLHAGTPLT 93
+V+++PH+ TE + + + +
Sbjct: 288 PNVVLSPHIAYYTETAVHNMVYFSLQHLVDFLTKGETS 325
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD,
tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A
{Pseudomonas aeruginosa}
Length = 380
Score = 61.2 bits (149), Expect = 9e-13
Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Query: 8 SLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGGV 67
+ LVN RG ++D +A+ LE G + LDV EP DP L + ++ TPH+ G
Sbjct: 201 TWLVNASRGAVVDNQALRRLLEGGADLEVALDVWEGEP--QADPELAARCLIATPHIAGY 258
Query: 68 TE 69
+
Sbjct: 259 SL 260
>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural
variant of the BAB rossmann fold, oxidoreductase; 1.98A
{Acidaminococcus fermentans}
Length = 331
Score = 61.1 bits (149), Expect = 9e-13
Identities = 31/98 (31%), Positives = 43/98 (43%), Gaps = 14/98 (14%)
Query: 10 LVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEP---------FDPNDPILK-----F 55
LVN RG L+D EAV +ESG LGG G DV E +P+ + +
Sbjct: 230 LVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLY 289
Query: 56 QSVLITPHVGGVTEHSYRSTAKVVGDVALQLHAGTPLT 93
VLITPH+G T+ + ++ +V L
Sbjct: 290 PRVLITPHLGSYTDEAVKNMVEVSYQNLKDLAETGDCP 327
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine
biosy structural genomics, PSI, protein structure
initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis}
SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A*
3ddn_A*
Length = 529
Score = 60.8 bits (148), Expect = 1e-12
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 10 LVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGGVTE 69
+VN RGGL+D A+A + GH+ GLDV TEP + P+ + V++TPH+G T
Sbjct: 228 IVNAARGGLVDEAALADAITGGHVRAAGLDVFATEP-CTDSPLFELAQVVVTPHLGASTA 286
>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein,
substrate binding domain, cofactor bindi domain,
oxidoreductase; 1.47A {Solenostemon scutellarioides}
PDB: 3baz_A*
Length = 333
Score = 60.7 bits (148), Expect = 1e-12
Identities = 28/86 (32%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 7 SSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGG 66
+L+NI RG +D + L G LGG GLDV EP + + + ++V++ PHVG
Sbjct: 244 KGVLINIGRGPHVDEPELVSALVEGRLGGAGLDVFEREP-EVPEKLFGLENVVLLPHVGS 302
Query: 67 VTEHSYRSTAKVVGDVALQLHAGTPL 92
T + + A +V +G PL
Sbjct: 303 GTVETRKVMADLVVGNLEAHFSGKPL 328
>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST
genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus
horikoshii} PDB: 2dbr_A* 2dbz_A*
Length = 334
Score = 60.3 bits (147), Expect = 2e-12
Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 7 SSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGG 66
+++L+NI RG ++D A+ L+ G + G GLDV EP N+ + K +V++TPH+G
Sbjct: 233 TAILINIARGKVVDTNALVKALKEGWIAGAGLDVFEEEP-YYNEELFKLDNVVLTPHIGS 291
Query: 67 VTE 69
+
Sbjct: 292 ASF 294
>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A));
2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4
c.23.12.1
Length = 320
Score = 59.5 bits (145), Expect = 3e-12
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 7 SSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGG 66
+++VN RG L+D E V LE+G L G DV EP + N+ + + PH+G
Sbjct: 231 GAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEP-NINEGYYDLPNTFLFPHIGS 289
Query: 67 VTE 69
Sbjct: 290 AAT 292
>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics,
riken structur genomics/proteomics initiative, RSGI,
NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}
Length = 311
Score = 59.1 bits (144), Expect = 4e-12
Identities = 26/63 (41%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 7 SSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGG 66
++L+N RG L+D EA+ L GHL G GLDV EP P P+ + +ITPH+G
Sbjct: 222 GAILLNTARGALVDTEALVEALR-GHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGS 280
Query: 67 VTE 69
Sbjct: 281 AGR 283
>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural
genomics, protein structure initiative, nysgrc, P
biology; 1.70A {Polaromonas SP}
Length = 345
Score = 58.4 bits (142), Expect = 8e-12
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 7 SSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVG 65
++++NI RG L++ +A+ L S HL GLDV EP + ++ +TPH+G
Sbjct: 256 GAVVINISRGDLINDDALIEALRSKHLFAAGLDVFANEP-AIDPRYRSLDNIFLTPHIG 313
>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid
dehydrogenase, oxidoreductase; HET: NAD; 1.70A
{Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A*
4e5m_A*
Length = 330
Score = 58.4 bits (142), Expect = 9e-12
Identities = 24/70 (34%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
Query: 7 SSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDV-------AWTEPFDPNDPILKFQSVL 59
+LLVN RG ++D AV LE G LGG DV P + +L + L
Sbjct: 229 GALLVNPCRGSVVDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTL 288
Query: 60 ITPHVGGVTE 69
TPH+G
Sbjct: 289 FTPHIGSAVR 298
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid; HET:
NAD; 2.36A {Salmonella enterica subsp}
Length = 381
Score = 55.0 bits (133), Expect = 1e-10
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 8 SLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGGV 67
++L+N RG ++D A+ L +G + LDV EP D N +L+ + T H+ G
Sbjct: 204 AILINACRGPVVDNAALLARLNAGQPLSVVLDVWEGEP-DLNVALLEAVDIG-TSHIAGY 261
Query: 68 TE 69
T
Sbjct: 262 TL 263
>3riv_A Ascorbate peroxidase; alpha helical bundle, heme peroxidase,
oxidoreductase; HET: HEM; 1.76A {Leishmania major} PDB:
3riw_A*
Length = 271
Score = 27.2 bits (61), Expect = 0.79
Identities = 11/34 (32%), Positives = 12/34 (35%), Gaps = 4/34 (11%)
Query: 15 RGGLLDYEAVA----HYLESGHLGGLGLDVAWTE 44
R G D E VA H H+ G WT
Sbjct: 145 RLGFNDQETVALIGAHTCGECHIEFSGYHGPWTH 178
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 26.5 bits (58), Expect = 1.7
Identities = 7/19 (36%), Positives = 10/19 (52%)
Query: 38 LDVAWTEPFDPNDPILKFQ 56
L + WT P + ILK+
Sbjct: 217 LKLTWTNPSIKSVIILKYN 235
>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A
{Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
Length = 205
Score = 25.8 bits (57), Expect = 2.0
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 40 VAWTEPFDPNDPILKF 55
+ W + D PIL +
Sbjct: 23 IHWEQQGDNRSPILHY 38
>3e2o_A CCP, cytochrome C peroxidase; cytochrome C peroxidase (CCP), heme,
hydrogen peroxide, iron, metal-binding, mitochondrion;
HET: HEM; 1.06A {Saccharomyces cerevisiae} PDB: 1z53_A*
1kok_A* 1sbm_A* 1sdq_A* 1s73_A* 1zby_A* 1zbz_A* 2b0z_A*
2b10_A* 2b11_A* 2b12_A* 2cyp_A* 2ycg_A* 2v23_A* 1ebe_A*
3r98_A* 3r99_A* 1mkr_A* 1mk8_A* 1mkq_A* ...
Length = 294
Score = 25.9 bits (57), Expect = 2.2
Identities = 11/33 (33%), Positives = 13/33 (39%), Gaps = 4/33 (12%)
Query: 15 RGGLLDYEAVA----HYLESGHLGGLGLDVAWT 43
R + D E VA H L HL G + W
Sbjct: 160 RLNMNDREVVALMGAHALGKTHLKRSGYEGPWG 192
>3sam_A 62 kDa protein, rifampicin resistance protein; double-barrel,
jelly-roll, scaffolding protein, structural P
rifampicin-resistance protein; 2.55A {Vaccinia virus}
PDB: 3saq_A 2ygc_A* 2ygb_A
Length = 576
Score = 25.8 bits (56), Expect = 2.5
Identities = 12/48 (25%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 36 LGLDVAWTEPFDPNDPILKF--QSVLITPHVGGVTEHSYRSTAKVVGD 81
L + V ++ N PI Q V++ + V+ S K++GD
Sbjct: 528 LSVRVVYST-MGVNHPIYYVQKQLVVVCNDLYKVSYDQGVSITKIMGD 574
>3ay3_A NAD-dependent epimerase/dehydratase; glucuronic acid dehydrogeanse,
oxidoreductase; 2.10A {Chromohalobacter salexigens}
Length = 267
Score = 25.7 bits (57), Expect = 2.6
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 8/74 (10%)
Query: 13 IVRGGLLDYEAVAHYLESG-----HLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGGV 67
IV L D +AV ++ HLGG+ ++ W + N I+ ++ G
Sbjct: 46 IVACDLADAQAVHDLVK-DCDGIIHLGGVSVERPWNDILQAN--IIGAYNLYEAARNLGK 102
Query: 68 TEHSYRSTAKVVGD 81
+ S+ +G
Sbjct: 103 PRIVFASSNHTIGY 116
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune
system; HET: TPO BMA; 2.51A {Homo sapiens}
Length = 537
Score = 25.6 bits (55), Expect = 3.0
Identities = 5/10 (50%), Positives = 6/10 (60%)
Query: 26 HYLESGHLGG 35
HY+ LGG
Sbjct: 289 HYITEAVLGG 298
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune
system; HET: TPO BMA; 2.51A {Homo sapiens}
Length = 554
Score = 25.7 bits (55), Expect = 3.2
Identities = 6/10 (60%), Positives = 8/10 (80%)
Query: 26 HYLESGHLGG 35
HY+ SG +GG
Sbjct: 310 HYITSGSMGG 319
>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 119
Score = 25.1 bits (55), Expect = 3.2
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 40 VAWTEPFDPNDPILKF 55
++W P + I F
Sbjct: 36 LSWRPPAEAKGNIQTF 51
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.8 bits (56), Expect = 3.5
Identities = 15/99 (15%), Positives = 31/99 (31%), Gaps = 37/99 (37%)
Query: 17 GLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGGV--------- 67
G++ +AHY+ + L G P + + T H G+
Sbjct: 242 GVI---QLAHYVVTAKLLGF----------TPGELRSYLKGA--TGHSQGLVTAVAIAET 286
Query: 68 -TEHSYRSTAKVVGDVALQL--------HAGTPLTGIEP 97
+ S+ + + A+ + + P T + P
Sbjct: 287 DSWESFFVSVR----KAITVLFFIGVRCYEAYPNTSLPP 321
>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 121
Score = 25.0 bits (55), Expect = 4.0
Identities = 7/16 (43%), Positives = 13/16 (81%)
Query: 40 VAWTEPFDPNDPILKF 55
+ WT+PFD N P++++
Sbjct: 38 LTWTKPFDGNSPLIRY 53
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex,
innate IMMU system, blood, membrane, cytolysin, immune
SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens}
PDB: 4a5w_B* 4e0s_B*
Length = 913
Score = 25.2 bits (54), Expect = 4.7
Identities = 7/10 (70%), Positives = 7/10 (70%)
Query: 26 HYLESGHLGG 35
HY SG LGG
Sbjct: 343 HYFTSGSLGG 352
>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III,
protein binding; HET: MSE; 1.30A {Drosophila
melanogaster} SCOP: b.1.2.1
Length = 115
Score = 24.5 bits (53), Expect = 5.5
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 40 VAWTEPFDPNDPILKF 55
+ W P + PI+ F
Sbjct: 21 LRWMVPRNDGLPIVIF 36
>2e9l_A Cytosolic beta-glucosidase; novel cytosolic neutral
beta-glycosylceramidase, hydrolase; HET: BGC PLM OLA;
1.60A {Homo sapiens} PDB: 2e9m_A* 2zox_A* 2jfe_X*
Length = 469
Score = 24.8 bits (55), Expect = 5.7
Identities = 8/17 (47%), Positives = 8/17 (47%)
Query: 35 GLGLDVAWTEPFDPNDP 51
L L W EP DPN
Sbjct: 221 SLSLFAVWLEPADPNSV 237
>3iib_A Peptidase M28; YP_926796.1, structural genomics, J center for
structural genomics, JCSG, protein structure INI PSI-2;
HET: PGE; 1.70A {Shewanella amazonensis SB2B}
Length = 444
Score = 24.8 bits (53), Expect = 7.3
Identities = 6/27 (22%), Positives = 10/27 (37%), Gaps = 1/27 (3%)
Query: 21 YEAVAHYLESGHLGGLGLDVAWTEPFD 47
+ + + L LG D + EP
Sbjct: 44 DKVAVDWAIA-KLQSLGFDRVYKEPVT 69
>3rft_A Uronate dehydrogenase; apoenzyme, rossmann fold, NAD binding,
oxidoreductase; 1.90A {Agrobacterium tumefaciens} PDB:
3rfv_A* 3rfx_A*
Length = 267
Score = 24.2 bits (53), Expect = 7.6
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 4/43 (9%)
Query: 11 VNIVRGGLLDYEAVAHYLESG----HLGGLGLDVAWTEPFDPN 49
V+ L D AV + HLGG+ ++ + + N
Sbjct: 45 EECVQCDLADANAVNAMVAGCDGIVHLGGISVEKPFEQILQGN 87
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 24.5 bits (52), Expect = 7.9
Identities = 6/19 (31%), Positives = 9/19 (47%)
Query: 38 LDVAWTEPFDPNDPILKFQ 56
+ + W P DPN I +
Sbjct: 611 IILKWKPPSDPNGNITHYL 629
>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur
binding, oxidoreductase; HET: HCN; 1.39A {Clostridium
pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB:
1c4c_A* 1c4a_A* 1feh_A*
Length = 574
Score = 24.3 bits (53), Expect = 8.3
Identities = 8/34 (23%), Positives = 14/34 (41%)
Query: 65 GGVTEHSYRSTAKVVGDVALQLHAGTPLTGIEPV 98
GGV E + RS + L+ + G+ +
Sbjct: 421 GGVMEAALRSAKDFAENAELEDIEYKQVRGLNGI 454
>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding;
2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
PDB: 2ibb_A
Length = 214
Score = 24.0 bits (52), Expect = 9.0
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 40 VAWTEPFDPNDPILKF 55
+ W P + PI+ F
Sbjct: 20 LRWMVPRNDGLPIVIF 35
>1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit));
hydrogene metabolism, periplasm; 1.60A {Desulfovibrio
vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A*
1gx7_A*
Length = 421
Score = 24.3 bits (53), Expect = 9.4
Identities = 7/34 (20%), Positives = 13/34 (38%)
Query: 65 GGVTEHSYRSTAKVVGDVALQLHAGTPLTGIEPV 98
GGV E + R + V + G++ +
Sbjct: 300 GGVMEAALRFAYEAVTGKKPDSWDFKAVRGLDGI 333
>1wcg_A Thioglucosidase, myrosinase; aphid, beta-glucosidase, insect,
beta-barrel, hydrolase, glycosidase; 1.10A {Brevicoryne
brassicae} SCOP: c.1.8.4
Length = 464
Score = 24.0 bits (53), Expect = 9.8
Identities = 1/17 (5%), Positives = 5/17 (29%)
Query: 35 GLGLDVAWTEPFDPNDP 51
+ + + P +
Sbjct: 222 SISISGVFFMPKNAESD 238
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.138 0.416
Gapped
Lambda K H
0.267 0.0783 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,559,742
Number of extensions: 83979
Number of successful extensions: 378
Number of sequences better than 10.0: 1
Number of HSP's gapped: 355
Number of HSP's successfully gapped: 67
Length of query: 99
Length of database: 6,701,793
Length adjustment: 65
Effective length of query: 34
Effective length of database: 4,886,928
Effective search space: 166155552
Effective search space used: 166155552
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.3 bits)