RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= 045269
(99 letters)
>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp.,
strain 101 [TaxId: 306]}
Length = 188
Score = 58.5 bits (140), Expect = 1e-12
Identities = 23/60 (38%), Positives = 31/60 (51%)
Query: 7 SSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLITPHVGG 66
+ +VN RG L D +AVA LESG L G DV + +P + P +TPH+ G
Sbjct: 129 GAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISG 188
>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase
{Hyphomicrobium methylovorum [TaxId: 84]}
Length = 191
Score = 56.8 bits (136), Expect = 5e-12
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 1 MSDVCTSSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLI 60
+ + +++VN RG L+D E V LE+G L G DV EP + N+ + +
Sbjct: 126 IKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEP-NINEGYYDLPNTFL 184
Query: 61 TPHVGG 66
PH+G
Sbjct: 185 FPHIGS 190
>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase
{Escherichia coli [TaxId: 562]}
Length = 188
Score = 56.5 bits (135), Expect = 6e-12
Identities = 29/64 (45%), Positives = 40/64 (62%), Gaps = 4/64 (6%)
Query: 7 SSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPND----PILKFQSVLITP 62
SLL+N RG ++D A+A L S HL G +DV TEP +D P+ +F +VL+TP
Sbjct: 125 GSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTP 184
Query: 63 HVGG 66
H+GG
Sbjct: 185 HIGG 188
>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human
(Homo sapiens), Ctbp1 [TaxId: 9606]}
Length = 193
Score = 55.5 bits (132), Expect = 2e-11
Identities = 23/66 (34%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 1 MSDVCTSSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPND-PILKFQSVL 59
+ + + LVN RGGL+D +A+A L+ G + G LDV +EPF + P+ +++
Sbjct: 127 VKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLI 186
Query: 60 ITPHVG 65
TPH
Sbjct: 187 CTPHAA 192
>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 184
Score = 50.3 bits (119), Expect = 1e-09
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 1 MSDVCTSSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILKFQSVLI 60
++ ++VN RGGL+D A+A + GH+ GLDV TEP + P+ + V++
Sbjct: 121 LAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPC-TDSPLFELAQVVV 179
Query: 61 TPHVG 65
TPH+G
Sbjct: 180 TPHLG 184
>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon
Pyrobaculum aerophilum [TaxId: 13773]}
Length = 181
Score = 49.4 bits (116), Expect = 3e-09
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 1 MSDVCTSSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTE-PFDPNDPILKFQSVL 59
++ + ++ VN+ R +LD + V L+ DV W F + +V+
Sbjct: 115 LALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVV 174
Query: 60 ITPHVGG 66
TP V G
Sbjct: 175 ATPWVAG 181
>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase
{Lactobacillus casei [TaxId: 1582]}
Length = 199
Score = 43.7 bits (101), Expect = 4e-07
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 13/79 (16%)
Query: 1 MSDVCTSSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPN----------- 49
+ + ++++N R L+D +A+ L+SG L G+G+D E D
Sbjct: 120 FNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDP 179
Query: 50 --DPILKFQSVLITPHVGG 66
D +L +V+++PH+
Sbjct: 180 LWDELLGMPNVVLSPHIAY 198
>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus
helveticus [TaxId: 1587]}
Length = 197
Score = 34.0 bits (76), Expect = 0.001
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 13/78 (16%)
Query: 1 MSDVCTSSLLVNIVRGGLLDYEAVAHYLESGHLGGLGLDVAWTEP-------------FD 47
++ + ++VN+ RG L+D +AV L+SG + G +DV E
Sbjct: 119 IAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDA 178
Query: 48 PNDPILKFQSVLITPHVG 65
++ +VL+TP
Sbjct: 179 RLADLIARPNVLVTPKTA 196
>d2izpa1 a.250.1.1 (A:1035-1301) Putative membrane antigen BipD
{Burkholderia pseudomallei [TaxId: 28450]}
Length = 267
Score = 29.1 bits (65), Expect = 0.062
Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 14 VRGGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPNDPILK 54
VRG + LE+ LGG LD A E DPIL+
Sbjct: 58 VRGHARAQRNLLERLETELLGGT-LDTAGDEGGIQPDPILQ 97
>d3bmva4 c.1.8.1 (A:1-406) Cyclodextrin glycosyltransferase
{Thermoanaerobacterium [TaxId: 28895]}
Length = 406
Score = 25.1 bits (53), Expect = 1.9
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 16 GGLLDYEAVAHYLESGHLGGLGLDVAWTEPFDPND 50
GG D++ + + + G+L G+G+ W N
Sbjct: 51 GG--DWQGIINKINDGYLTGMGVTAIWIPQPVENI 83
>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis
[TaxId: 1423]}
Length = 273
Score = 24.8 bits (53), Expect = 2.4
Identities = 6/32 (18%), Positives = 14/32 (43%), Gaps = 4/32 (12%)
Query: 13 IVRGGLLDYEAVAHYL----ESGHLGGLGLDV 40
++ GGL++Y+ + + G L +
Sbjct: 240 LMSGGLINYDKTTEVIIRDIRTEKFGRLSFEQ 271
>d1x5la1 b.1.2.1 (A:8-105) Ephrin type-A receptor 8 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 98
Score = 24.0 bits (51), Expect = 3.1
Identities = 7/39 (17%), Positives = 16/39 (41%)
Query: 38 LDVAWTEPFDPNDPILKFQSVLITPHVGGVTEHSYRSTA 76
+ + W EP PN IL+++ + + ++
Sbjct: 20 VSLLWQEPEQPNGIILEYEIKYYEKDKEMQSYSTLKAVT 58
>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 108
Score = 23.2 bits (49), Expect = 4.8
Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 1/53 (1%)
Query: 38 LDVAWTEPFDPNDPILKFQSVLITPHVGGVTEHSYRSTAKVVGDVALQLHAGT 90
+++ WT+PFD N P++ + ++ + T K L
Sbjct: 29 INLTWTKPFDGNSPLI-RYILEMSENNAPWTVLLASVDPKATSVTVKGLVPAR 80
>d1qd1a2 d.58.34.1 (A:181-326) Formiminotransferase domain of
formiminotransferase-cyclodeaminase. {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 146
Score = 23.1 bits (50), Expect = 6.8
Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 2/21 (9%)
Query: 35 GLGLDVAWTEPFDPNDPILKF 55
LGLD PF P + I+++
Sbjct: 126 RLGLDS--LAPFKPKERIIEY 144
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.138 0.416
Gapped
Lambda K H
0.267 0.0400 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 367,389
Number of extensions: 14434
Number of successful extensions: 45
Number of sequences better than 10.0: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 18
Length of query: 99
Length of database: 2,407,596
Length adjustment: 61
Effective length of query: 38
Effective length of database: 1,570,066
Effective search space: 59662508
Effective search space used: 59662508
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)