BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 045270
(440 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 116/429 (27%), Positives = 171/429 (39%), Gaps = 70/429 (16%)
Query: 18 DEAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYL 77
D G + L +S ISG ++ + + L L+++ +F+ T IP L + S+L +L
Sbjct: 175 DGCGELKHLAISGNKISGDVDVSRCV----NLEFLDVSSNNFS-TGIPF-LGDCSALQHL 228
Query: 78 NLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSI 137
++S +G IS+ L L+ S NQF G I + L +L Y L++N G I
Sbjct: 229 DISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEI 285
Query: 138 PRSMFEFPIFXXXXXXXXXXXXXXGNRLRGSIPVSVFEXXXXXXXXXXXXXXHGTVQLDK 197
P F GN G++P G + +D
Sbjct: 286 PD-------FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT 338
Query: 198 ILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLRE--IPNL--KNQSQLQY 253
+L + L LDLS+N + + + S L L+L+S +PNL ++ LQ
Sbjct: 339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398
Query: 254 LYLSENQISREIPNWIWRVS-VVGLHCLNLSHNLLVGF--QGPYSIPALRFIDLSSHQLR 310
LYL N + +IP + S +V LH LS N L G S+ LR + L + L
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLH---LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455
Query: 311 GNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTXX 370
G ++P L+Y+ L N LTG IP+ L N T
Sbjct: 456 G---EIPQELMYVK-------------------TLETLILDFNDLTGEIPSGLSNCTN-- 491
Query: 371 XXXXXXXXFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFP 430
L + L+ NRL G +PK I + L +L L NN FS P
Sbjct: 492 --------------------LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 531
Query: 431 CWLYDAPSL 439
L D SL
Sbjct: 532 AELGDCRSL 540
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 126/501 (25%), Positives = 199/501 (39%), Gaps = 101/501 (20%)
Query: 2 QWRQSTDCCDWSGVDCDEAGHVIGLDLSTESISGG-----------------------IE 38
W + + C + GV C + V +DLS++ ++ G I
Sbjct: 32 DWSSNKNPCTFDGVTCRDD-KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN 90
Query: 39 NAASLFSLHY-LRSLNLARTSFNG-TQIPSKLANISSLTYLNLSD--AGFAGHIPLQISS 94
+ S F L SL+L+R S +G + L + S L +LN+S F G + +
Sbjct: 91 GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK- 149
Query: 95 MARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFXXXXXXX 154
+ L LD S N SG+ N+V VLSD G +
Sbjct: 150 LNSLEVLDLSANSISGA----------NVVGWVLSDGC--GELKH--------------- 182
Query: 155 XXXXXXXGNRLRGSIPVSVFEXXXXXXXXXXXXXXHGTVQLDKILNLGNLAKLDLSYNSL 214
GN++ G + VS + + + + + L LD+S N L
Sbjct: 183 ---LAISGNKISGDVDVS----RCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKL 235
Query: 215 AVDESSRNYSFSPMLELLNLASCK-LREIPNLKNQSQLQYLYLSENQISREIPNWIWRVS 273
+ D SR S L+LLN++S + + IP L +S LQYL L+EN+ + EIP+++
Sbjct: 236 SGD-FSRAISTCTELKLLNISSNQFVGPIPPLPLKS-LQYLSLAENKFTGEIPDFLSGAC 293
Query: 274 VVGLHCLNLSHNLLVGFQGPY---------------------------SIPALRFIDLSS 306
L L+LS N G P+ + L+ +DLS
Sbjct: 294 DT-LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 352
Query: 307 HQLRGNIHQ----LPNNLIYIDFSNNNFTSSI-PADTGNFMPRLRYFCAANNGLTGIIPA 361
++ G + + L +L+ +D S+NNF+ I P N L+ NNG TG IP
Sbjct: 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412
Query: 362 SLCNATTXXXXXXXXXXFMKKSDAFLNCL--LQTLDLNGNRLQGTVPKSIANCKMLEVLN 419
+L N + + L L L+ L L N L+G +P+ + K LE L
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 472
Query: 420 LGNNQFSDKFPCWLYDAPSLH 440
L N + + P L + +L+
Sbjct: 473 LDFNDLTGEIPSGLSNCTNLN 493
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 104/431 (24%), Positives = 168/431 (38%), Gaps = 83/431 (19%)
Query: 26 LDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLAN-ISSLTYLNLSDAGF 84
LDLS SG + + + S L +L+L+ +F+G +P+ N ++L L L + GF
Sbjct: 348 LDLSFNEFSGELPESLTNLSASLL-TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 406
Query: 85 AGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEF 144
G IP +S+ + LV+L SFN SG+I S L L L N L G IP+ +
Sbjct: 407 TGKIPPTLSNCSELVSLHLSFNYLSGTIPS-SLGSLSKLRDLKLWLNMLEGEIPQELMYV 465
Query: 145 PIFXXXXXXXXXXXXXXGNRLRGSIPVSVFEXXXXXXXXXXXXXXHGTVQLDKILNLGNL 204
N L G IP + G + I L NL
Sbjct: 466 KTLETLILDF--------NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP-KWIGRLENL 516
Query: 205 AKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISRE 264
A L LS NS + + + L C+ L +L L+ N +
Sbjct: 517 AILKLSNNSFSGNIPAE------------LGDCR-----------SLIWLDLNTNLFNGT 553
Query: 265 IPNWIWRVS-------VVGLHCLNLSHNL----------LVGFQGPYSIPALRF-----I 302
IP +++ S + G + + ++ L+ FQG S R
Sbjct: 554 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 613
Query: 303 DLSSHQLRGNIHQLPNN---LIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGII 359
+++S G+ +N ++++D S N + IP + G+ MP L +N ++G I
Sbjct: 614 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS-MPYLFILNLGHNDISGSI 672
Query: 360 PASLCNATTXXXXXXXXXXFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLN 419
P + + L LDL+ N+L G +P++++ ML ++
Sbjct: 673 PDEVGDLRG----------------------LNILDLSSNKLDGRIPQAMSALTMLTEID 710
Query: 420 LGNNQFSDKFP 430
L NN S P
Sbjct: 711 LSNNNLSGPIP 721
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 18 DEAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYL 77
D G ++ LD+S +SG I + S+ YL LNL +G+ IP ++ ++ L L
Sbjct: 629 DNNGSMMFLDMSYNMLSGYI--PKEIGSMPYLFILNLGHNDISGS-IPDEVGDLRGLNIL 685
Query: 78 NLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSI 115
+LS G IP +S++ L +D S N SG I +
Sbjct: 686 DLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 116/429 (27%), Positives = 171/429 (39%), Gaps = 70/429 (16%)
Query: 18 DEAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYL 77
D G + L +S ISG ++ + + L L+++ +F+ T IP L + S+L +L
Sbjct: 172 DGCGELKHLAISGNKISGDVDVSRCV----NLEFLDVSSNNFS-TGIPF-LGDCSALQHL 225
Query: 78 NLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSI 137
++S +G IS+ L L+ S NQF G I + L +L Y L++N G I
Sbjct: 226 DISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP---LKSLQYLSLAENKFTGEI 282
Query: 138 PRSMFEFPIFXXXXXXXXXXXXXXGNRLRGSIPVSVFEXXXXXXXXXXXXXXHGTVQLDK 197
P F GN G++P G + +D
Sbjct: 283 PD-------FLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT 335
Query: 198 ILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLRE--IPNL--KNQSQLQY 253
+L + L LDLS+N + + + S L L+L+S +PNL ++ LQ
Sbjct: 336 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 395
Query: 254 LYLSENQISREIPNWIWRVS-VVGLHCLNLSHNLLVGF--QGPYSIPALRFIDLSSHQLR 310
LYL N + +IP + S +V LH LS N L G S+ LR + L + L
Sbjct: 396 LYLQNNGFTGKIPPTLSNCSELVSLH---LSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 452
Query: 311 GNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTXX 370
G ++P L+Y+ L N LTG IP+ L N T
Sbjct: 453 G---EIPQELMYVK-------------------TLETLILDFNDLTGEIPSGLSNCTN-- 488
Query: 371 XXXXXXXXFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFP 430
L + L+ NRL G +PK I + L +L L NN FS P
Sbjct: 489 --------------------LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP 528
Query: 431 CWLYDAPSL 439
L D SL
Sbjct: 529 AELGDCRSL 537
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 126/501 (25%), Positives = 199/501 (39%), Gaps = 101/501 (20%)
Query: 2 QWRQSTDCCDWSGVDCDEAGHVIGLDLSTESISGG-----------------------IE 38
W + + C + GV C + V +DLS++ ++ G I
Sbjct: 29 DWSSNKNPCTFDGVTCRDD-KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHIN 87
Query: 39 NAASLFSLHY-LRSLNLARTSFNG-TQIPSKLANISSLTYLNLSD--AGFAGHIPLQISS 94
+ S F L SL+L+R S +G + L + S L +LN+S F G + +
Sbjct: 88 GSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK- 146
Query: 95 MARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFXXXXXXX 154
+ L LD S N SG+ N+V VLSD G +
Sbjct: 147 LNSLEVLDLSANSISGA----------NVVGWVLSDGC--GELKH--------------- 179
Query: 155 XXXXXXXGNRLRGSIPVSVFEXXXXXXXXXXXXXXHGTVQLDKILNLGNLAKLDLSYNSL 214
GN++ G + VS + + + + + L LD+S N L
Sbjct: 180 ---LAISGNKISGDVDVS----RCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKL 232
Query: 215 AVDESSRNYSFSPMLELLNLASCK-LREIPNLKNQSQLQYLYLSENQISREIPNWIWRVS 273
+ D SR S L+LLN++S + + IP L +S LQYL L+EN+ + EIP+++
Sbjct: 233 SGD-FSRAISTCTELKLLNISSNQFVGPIPPLPLKS-LQYLSLAENKFTGEIPDFLSGAC 290
Query: 274 VVGLHCLNLSHNLLVGFQGPY---------------------------SIPALRFIDLSS 306
L L+LS N G P+ + L+ +DLS
Sbjct: 291 DT-LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSF 349
Query: 307 HQLRGNIHQ----LPNNLIYIDFSNNNFTSSI-PADTGNFMPRLRYFCAANNGLTGIIPA 361
++ G + + L +L+ +D S+NNF+ I P N L+ NNG TG IP
Sbjct: 350 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 409
Query: 362 SLCNATTXXXXXXXXXXFMKKSDAFLNCL--LQTLDLNGNRLQGTVPKSIANCKMLEVLN 419
+L N + + L L L+ L L N L+G +P+ + K LE L
Sbjct: 410 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLI 469
Query: 420 LGNNQFSDKFPCWLYDAPSLH 440
L N + + P L + +L+
Sbjct: 470 LDFNDLTGEIPSGLSNCTNLN 490
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 104/431 (24%), Positives = 168/431 (38%), Gaps = 83/431 (19%)
Query: 26 LDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLAN-ISSLTYLNLSDAGF 84
LDLS SG + + + S L +L+L+ +F+G +P+ N ++L L L + GF
Sbjct: 345 LDLSFNEFSGELPESLTNLSASLL-TLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGF 403
Query: 85 AGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEF 144
G IP +S+ + LV+L SFN SG+I S L L L N L G IP+ +
Sbjct: 404 TGKIPPTLSNCSELVSLHLSFNYLSGTIPS-SLGSLSKLRDLKLWLNMLEGEIPQELMYV 462
Query: 145 PIFXXXXXXXXXXXXXXGNRLRGSIPVSVFEXXXXXXXXXXXXXXHGTVQLDKILNLGNL 204
N L G IP + G + I L NL
Sbjct: 463 KTLETLILDF--------NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP-KWIGRLENL 513
Query: 205 AKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISRE 264
A L LS NS + + + L C+ L +L L+ N +
Sbjct: 514 AILKLSNNSFSGNIPAE------------LGDCR-----------SLIWLDLNTNLFNGT 550
Query: 265 IPNWIWRVS-------VVGLHCLNLSHNL----------LVGFQGPYSIPALRF-----I 302
IP +++ S + G + + ++ L+ FQG S R
Sbjct: 551 IPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPC 610
Query: 303 DLSSHQLRGNIHQLPNN---LIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGII 359
+++S G+ +N ++++D S N + IP + G+ MP L +N ++G I
Sbjct: 611 NITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS-MPYLFILNLGHNDISGSI 669
Query: 360 PASLCNATTXXXXXXXXXXFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLN 419
P + + L LDL+ N+L G +P++++ ML ++
Sbjct: 670 PDEVGDLRG----------------------LNILDLSSNKLDGRIPQAMSALTMLTEID 707
Query: 420 LGNNQFSDKFP 430
L NN S P
Sbjct: 708 LSNNNLSGPIP 718
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 18 DEAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYL 77
D G ++ LD+S +SG I + S+ YL LNL +G+ IP ++ ++ L L
Sbjct: 626 DNNGSMMFLDMSYNMLSGYI--PKEIGSMPYLFILNLGHNDISGS-IPDEVGDLRGLNIL 682
Query: 78 NLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSI 115
+LS G IP +S++ L +D S N SG I +
Sbjct: 683 DLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 720
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 83/293 (28%), Positives = 121/293 (41%), Gaps = 43/293 (14%)
Query: 3 WRQSTDCCD--WSGVDCD---EAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLART 57
W +TDCC+ W GV CD + V LDLS ++ +SL +L YL L +
Sbjct: 27 WLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI 86
Query: 58 SFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRW 117
+ IP +A ++ L YL ++ +G IP +S + LV LDFS+N SG++
Sbjct: 87 NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP-SI 145
Query: 118 EHLLNLVYAVLSDNSLNGSIPRSMFEFPIFXXXXXXXXXXXXXXGNRLRGSIPVSVFEXX 177
L NLV N ++G+IP S F NRL G IP +
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSF-------SKLFTSMTISRNRLTGKIPPTFANL- 197
Query: 178 XXXXXXXXXXXXHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASC 237
NLA +DLS N L D S + + ++LA
Sbjct: 198 -------------------------NLAFVDLSRNMLEGDASVL-FGSDKNTQKIHLAKN 231
Query: 238 KLR-EIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVG 289
L ++ + L L L N+I +P + ++ LH LN+S N L G
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKF--LHSLNVSFNNLCG 282
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 81/212 (38%), Gaps = 45/212 (21%)
Query: 243 PNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFI 302
P + +QL YLY++ +S IP+++ ++ L L+ S+N L G P
Sbjct: 95 PAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT--LVTLDFSYNALSGTLPP--------- 143
Query: 303 DLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPAS 362
+I LPN L+ I F N + +IP G+F + N LTG IP +
Sbjct: 144 ---------SISSLPN-LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPT 193
Query: 363 LCNATTX------------------XXXXXXXXXFMKKSDAF------LNCLLQTLDLNG 398
N K S AF L+ L LDL
Sbjct: 194 FANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRN 253
Query: 399 NRLQGTVPKSIANCKMLEVLNLGNNQFSDKFP 430
NR+ GT+P+ + K L LN+ N + P
Sbjct: 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 233 NLASCKLREIPNLKNQ--SQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLL--V 288
N+ SC +++PN+ S L LS N +SR W + LH L LSHN L +
Sbjct: 21 NILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWT-PTRLTNLHSLLLSHNHLNFI 79
Query: 289 GFQGPYSIPALRFIDLSSHQLR 310
+ +P LR++DLSS+ L
Sbjct: 80 SSEAFVPVPNLRYLDLSSNHLH 101
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 9/66 (13%)
Query: 203 NLAKLDLSYNSL-AVDESSRNYSFSPM--LELLNLASCKLREIPN--LKNQSQLQYLYLS 257
NL LDLS N L +DE + FS + LE+L L + + + ++ +QLQ LYLS
Sbjct: 89 NLRYLDLSSNHLHTLDE----FLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLS 144
Query: 258 ENQISR 263
+NQISR
Sbjct: 145 QNQISR 150
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 91/219 (41%), Gaps = 15/219 (6%)
Query: 225 FSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNL 282
P LL+L + K+ EI + KN L L L N+IS+ P +V L L L
Sbjct: 50 LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF--APLVKLERLYL 107
Query: 283 SHNLLVGF--QGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGN 340
S N L + P ++ LR + ++R ++ N +I ++ N SS + G
Sbjct: 108 SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS-GIENGA 166
Query: 341 F--MPRLRYFCAANNGLTGIIPASLCNATTXXXXXXXXXXFMKKSDAFLNCL--LQTLDL 396
F M +L Y A+ +T IP L + T K A L L L L L
Sbjct: 167 FQGMKKLSYIRIADTNIT-TIPQGLPPSLTELHLDGNK--ITKVDAASLKGLNNLAKLGL 223
Query: 397 NGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYD 435
+ N + S+AN L L+L NN+ K P L D
Sbjct: 224 SFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 261
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 201 LGNLAKLDLSYNSL-AVDESSRNYSFSPMLELLNLASCKLREIP-NLKNQSQLQYLYLSE 258
L NLAKL LS+NS+ AVD S + +P L L+L + KL ++P L + +Q +YL
Sbjct: 215 LNNLAKLGLSFNSISAVDNGS--LANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHN 272
Query: 259 NQIS 262
N IS
Sbjct: 273 NNIS 276
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 91/219 (41%), Gaps = 15/219 (6%)
Query: 225 FSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNL 282
P LL+L + K+ EI + KN L L L N+IS+ P +V L L L
Sbjct: 50 LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF--APLVKLERLYL 107
Query: 283 SHNLLVGF--QGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGN 340
S N L + P ++ LR + ++R ++ N +I ++ N SS + G
Sbjct: 108 SKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS-GIENGA 166
Query: 341 F--MPRLRYFCAANNGLTGIIPASLCNATTXXXXXXXXXXFMKKSDAFLNCL--LQTLDL 396
F M +L Y A+ +T IP L + T K A L L L L L
Sbjct: 167 FQGMKKLSYIRIADTNIT-TIPQGLPPSLTELHLDGNK--ITKVDAASLKGLNNLAKLGL 223
Query: 397 NGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYD 435
+ N + S+AN L L+L NN+ K P L D
Sbjct: 224 SFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD 261
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 201 LGNLAKLDLSYNSL-AVDESSRNYSFSPMLELLNLASCKLREIP-NLKNQSQLQYLYLSE 258
L NLAKL LS+NS+ AVD S + +P L L+L + KL ++P L + +Q +YL
Sbjct: 215 LNNLAKLGLSFNSISAVDNGS--LANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHN 272
Query: 259 NQIS 262
N IS
Sbjct: 273 NNIS 276
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 6/114 (5%)
Query: 251 LQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIP-ALRFIDLSSHQL 309
LQ L LS+N + +++ L L++S N P +RF++LSS +
Sbjct: 363 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGI 422
Query: 310 RGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASL 363
R +P L +D SNNN S F+PRL+ + N L + ASL
Sbjct: 423 RVVKTCIPQTLEVLDVSNNNLDS-----FSLFLPRLQELYISRNKLKTLPDASL 471
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 51/114 (44%), Gaps = 6/114 (5%)
Query: 251 LQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIP-ALRFIDLSSHQL 309
LQ L LS+N + +++ L L++S N P +RF++LSS +
Sbjct: 389 LQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGI 448
Query: 310 RGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASL 363
R +P L +D SNNN S F+PRL+ + N L + ASL
Sbjct: 449 RVVKTCIPQTLEVLDVSNNNLDS-----FSLFLPRLQELYISRNKLKTLPDASL 497
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 35.8 bits (81), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 52/133 (39%), Gaps = 29/133 (21%)
Query: 199 LNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSE 258
L+LG L +L SY S E N L LNLA C LREIPNL +L L LS
Sbjct: 165 LDLGELKRL--SYISEGAFEGLSN------LRYLNLAMCNLREIPNLTPLIKLDELDLSG 216
Query: 259 NQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPN 318
N +S P FQG + L I + N
Sbjct: 217 NHLSAIRPG---------------------SFQGLMHLQKLWMIQSQIQVIERNAFDNLQ 255
Query: 319 NLIYIDFSNNNFT 331
+L+ I+ ++NN T
Sbjct: 256 SLVEINLAHNNLT 268
>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein
From Yersinia Pestis
pdb|1JL5|A Chain A, Novel Molecular Architecture Of Yopm-A Leucine-Rich
Effector Protein From Yersinia Pestis
Length = 454
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 76/169 (44%), Gaps = 18/169 (10%)
Query: 191 GTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPM-LELLNLASCKLREIPNLKNQS 249
G QL+++ L NL L Y A + S + P+ LE + + L E+P L+N
Sbjct: 181 GNNQLEELPELQNLPFLTAIY---ADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLP 237
Query: 250 QLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQL 309
L +Y ++N + + +P+ L LN+ N L P +L F+D+S +
Sbjct: 238 FLTTIY-ADNNLLKTLPDL-----PPSLEALNVRDNYLTDL--PELPQSLTFLDVSENIF 289
Query: 310 RGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGI 358
G + +LP NL Y++ S+N S + P L +NN L +
Sbjct: 290 SG-LSELPPNLYYLNASSNEIRS-----LCDLPPSLEELNVSNNKLIEL 332
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 9/112 (8%)
Query: 229 LELLNLASCKLREIP--NLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNL 286
+ +LNL +LR +P N SQL L + N IS+ P ++ + L LNL HN
Sbjct: 37 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPM--LKVLNLQHNE 94
Query: 287 L-----VGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSS 333
L F ++ L + S +++ N NLI +D S+N +S+
Sbjct: 95 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 146
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 9/112 (8%)
Query: 229 LELLNLASCKLREIP--NLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNL 286
+ +LNL +LR +P N SQL L + N IS+ P ++ + L LNL HN
Sbjct: 32 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPM--LKVLNLQHNE 89
Query: 287 L-----VGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSS 333
L F ++ L + S +++ N NLI +D S+N +S+
Sbjct: 90 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 141
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 9/112 (8%)
Query: 229 LELLNLASCKLREIP--NLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNL 286
+ +LNL +LR +P N SQL L + N IS+ P ++ + L LNL HN
Sbjct: 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPM--LKVLNLQHNE 84
Query: 287 L-----VGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSS 333
L F ++ L + S +++ N NLI +D S+N +S+
Sbjct: 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSST 136
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Query: 197 KILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYL 256
+ L+LG L +L+ Y S A E N L LNL C L++IPNL +L+ L L
Sbjct: 134 RRLDLGELKRLE--YISEAAFEGLVN------LRYLNLGMCNLKDIPNLTALVRLEELEL 185
Query: 257 SENQI 261
S N++
Sbjct: 186 SGNRL 190
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 9/112 (8%)
Query: 229 LELLNLASCKLREIP--NLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNL 286
+ +LNL +LR +P N SQL L N IS+ P + + L LNL HN
Sbjct: 27 ITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPL--LKVLNLQHNE 84
Query: 287 L--VGFQGPYSIPALRFIDLSS---HQLRGNIHQLPNNLIYIDFSNNNFTSS 333
L + Q L +DL S H+++ N + NLI +D S+N +S+
Sbjct: 85 LSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSST 136
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 8/65 (12%)
Query: 197 KILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYL 256
+ L+LG L +L+ Y S A E N + LNL C L++IPNL +L+ L L
Sbjct: 134 RRLDLGELKRLE--YISEAAFEGLVNLRY------LNLGMCNLKDIPNLTALVRLEELEL 185
Query: 257 SENQI 261
S N++
Sbjct: 186 SGNRL 190
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Query: 46 LHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSF 105
L L L +A SF +P + +LT+L+LS P +S++ L L+ +
Sbjct: 444 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS 503
Query: 106 NQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPR 139
NQ I ++ L +L L N + S PR
Sbjct: 504 NQLKSVPDGI-FDRLTSLQKIWLHTNPWDCSCPR 536
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 12/117 (10%)
Query: 195 LDKILNLGNLAKLDLSYNSLAVD-ESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQY 253
LD I++L N S++ ++V E +++S++ + L L +CK + P LK +S L+
Sbjct: 271 LDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS-LKR 329
Query: 254 LYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQG-----PYSIPALRFIDLS 305
L + N+ N V + L L+LS N L F+G + +L+++DLS
Sbjct: 330 LTFTSNKGG----NAFSEVDLPSLEFLDLSRNGL-SFKGCCSQSDFGTTSLKYLDLS 381
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 9/126 (7%)
Query: 23 VIGLDLS---TESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNL 79
+I LD+S T GI N S L L +A SF +P + +LT+L+L
Sbjct: 423 LIYLDISHTHTRVAFNGIFNGLS-----SLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 477
Query: 80 SDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPR 139
S P +S++ L L+ S N F S+ + ++ L +L S N + S +
Sbjct: 478 SQCQLEQLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 536
Query: 140 SMFEFP 145
+ FP
Sbjct: 537 ELQHFP 542
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 12/117 (10%)
Query: 195 LDKILNLGNLAKLDLSYNSLAVD-ESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQY 253
LD I++L N S++ ++V E +++S++ + L L +CK + P LK +S L+
Sbjct: 271 LDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS-LKR 329
Query: 254 LYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQG-----PYSIPALRFIDLS 305
L + N+ N V + L L+LS N L F+G + +L+++DLS
Sbjct: 330 LTFTSNKGG----NAFSEVDLPSLEFLDLSRNGL-SFKGCCSQSDFGTTSLKYLDLS 381
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 93/224 (41%), Gaps = 52/224 (23%)
Query: 229 LELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIP--------------NWIWRV-- 272
L +N ++ +L +I LKN ++L + ++ NQI+ P N I +
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP 124
Query: 273 --SVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPN--NLIYIDFSNN 328
++ L+ L LS N + + +L+ ++ SS+Q+ ++ L N L +D S+N
Sbjct: 125 LKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVT-DLKPLANLTTLERLDISSN 183
Query: 329 NFTS-SIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTXXXXXXXXXXFMKKSDAFL 387
+ S+ A N L A NN ++ I P +
Sbjct: 184 KVSDISVLAKLTN----LESLIATNNQISDITPLGILTN--------------------- 218
Query: 388 NCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPC 431
L L LNGN+L+ ++A+ L L+L NNQ S+ P
Sbjct: 219 ---LDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPL 257
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 55/126 (43%), Gaps = 9/126 (7%)
Query: 23 VIGLDLS---TESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNL 79
+I LD+S T GI N S L L +A SF +P + +LT+L+L
Sbjct: 447 LIYLDISHTHTRVAFNGIFNGLS-----SLEVLKMAGNSFQENFLPDIFTELRNLTFLDL 501
Query: 80 SDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPR 139
S P +S++ L L+ S N F S+ + ++ L +L S N + S +
Sbjct: 502 SQCQLEQLSPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQ 560
Query: 140 SMFEFP 145
+ FP
Sbjct: 561 ELQHFP 566
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 60/117 (51%), Gaps = 12/117 (10%)
Query: 195 LDKILNLGNLAKLDLSYNSLAVD-ESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQY 253
LD I++L N S++ ++V E +++S++ + L L +CK + P LK +S L+
Sbjct: 295 LDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS-LKR 353
Query: 254 LYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQG-----PYSIPALRFIDLS 305
L + N+ N V + L L+LS N L F+G + +L+++DLS
Sbjct: 354 LTFTSNKGG----NAFSEVDLPSLEFLDLSRNGL-SFKGCCSQSDFGTISLKYLDLS 405
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 383 SDAFLNCL---LQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQF 425
+D CL ++ LDL+ N+++ ++PK + + L+ LN+ +NQ
Sbjct: 412 TDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQL 456
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Query: 46 LHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSF 105
L L L +A SF +P + +LT+L+LS P +S++ L L+ S
Sbjct: 149 LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 208
Query: 106 NQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFP 145
N F S+ + ++ L +L S N + S + + FP
Sbjct: 209 NNF-FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 247
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 49/233 (21%), Positives = 84/233 (36%), Gaps = 48/233 (20%)
Query: 251 LQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHN----LLVGFQGPYSIPALRFIDLSS 306
++YL + I+ I + S L L + H L + YS+ A I + S
Sbjct: 278 VEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLS 337
Query: 307 HQLRGNIHQL----PNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPAS 362
IH + P++ +++F+ N FT S+ + RL+ NGL +
Sbjct: 338 ISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCST-LKRLQTLILQRNGLKNFFKVA 396
Query: 363 LCNATTXXXXXXXXXXFMKKSDAF------------------------LNCL---LQTLD 395
L S A+ CL ++ LD
Sbjct: 397 LMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLD 456
Query: 396 LNGNRLQGTVPKSIANCKMLEVLNLGNNQFS-------DKFP----CWLYDAP 437
L+ NR+ ++PK + + + L+ LN+ +NQ D+ WL+D P
Sbjct: 457 LHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 92/224 (41%), Gaps = 52/224 (23%)
Query: 229 LELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIP--------------NWIWRV-- 272
L +N ++ +L +I LKN ++L + ++ NQI+ P N I +
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP 124
Query: 273 --SVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPN--NLIYIDFSNN 328
++ L+ L LS N + + +L+ + SS+Q+ ++ L N L +D S+N
Sbjct: 125 LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVT-DLKPLANLTTLERLDISSN 183
Query: 329 NFTS-SIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTXXXXXXXXXXFMKKSDAFL 387
+ S+ A N L A NN ++ I P +
Sbjct: 184 KVSDISVLAKLTN----LESLIATNNQISDITPLGILTN--------------------- 218
Query: 388 NCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPC 431
L L LNGN+L+ ++A+ L L+L NNQ S+ P
Sbjct: 219 ---LDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPL 257
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 62/146 (42%), Gaps = 16/146 (10%)
Query: 118 EHLLNLVYAVLSDNSLNGSIPRSMFEFPIFXXXXXXXXXXXXXXGNRLRGSIPVSVFEXX 177
+ L NL Y +L+ N L S+P +F+ N+L+ S+P VF+
Sbjct: 82 KELTNLTYLILTGNQLQ-SLPNGVFD-------KLTNLKELVLVENQLQ-SLPDGVFDKL 132
Query: 178 XXXXXXXXXXXXHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLEL--LNLA 235
++ L NL +LDLSYN L +S F + +L L L
Sbjct: 133 TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQL---QSLPEGVFDKLTQLKDLRLY 189
Query: 236 SCKLREIPN--LKNQSQLQYLYLSEN 259
+L+ +P+ + LQY++L +N
Sbjct: 190 QNQLKSVPDGVFDRLTSLQYIWLHDN 215
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 54/224 (24%), Positives = 92/224 (41%), Gaps = 52/224 (23%)
Query: 229 LELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIP--------------NWIWRV-- 272
L +N ++ +L +I LKN ++L + ++ NQI+ P N I +
Sbjct: 65 LTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP 124
Query: 273 --SVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPN--NLIYIDFSNN 328
++ L+ L LS N + + +L+ + SS+Q+ ++ L N L +D S+N
Sbjct: 125 LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFSSNQVT-DLKPLANLTTLERLDISSN 183
Query: 329 NFTS-SIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTXXXXXXXXXXFMKKSDAFL 387
+ S+ A N L A NN ++ I P +
Sbjct: 184 KVSDISVLAKLTN----LESLIATNNQISDITPLGILTN--------------------- 218
Query: 388 NCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPC 431
L L LNGN+L+ ++A+ L L+L NNQ S+ P
Sbjct: 219 ---LDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAPL 257
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 53/105 (50%), Gaps = 10/105 (9%)
Query: 204 LAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREI-PNL-KNQSQLQYLYLSENQI 261
L +LDLS N+ + L L+L C L+E+ P L + + LQYLYL +N +
Sbjct: 81 LEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNL 140
Query: 262 SREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSS 306
+ +P+ +R +G NL+H L G + P S+P F L S
Sbjct: 141 -QALPDNTFR--DLG----NLTHLFLHGNRIP-SVPEHAFRGLHS 177
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 88/208 (42%), Gaps = 39/208 (18%)
Query: 225 FSPMLELLNL--ASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNL 282
S +++L NL + K+ +I L+N + L+ LYL+E+ IS P ++ + LNL
Sbjct: 84 LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISP----LANLTKXYSLNL 139
Query: 283 SHNLLVGFQGPYS-IPALRFIDLSSHQLRGNIHQLPN--NLIYIDFSNNNFTSSIPADTG 339
N + P S L ++ ++ +++ ++ + N +L + + N P +
Sbjct: 140 GANHNLSDLSPLSNXTGLNYLTVTESKVK-DVTPIANLTDLYSLSLNYNQIEDISPLAS- 197
Query: 340 NFMPRLRYFCAANNGLTGIIPASLCNATTXXXXXXXXXXFMKKSDAFLNCLLQTLDLNGN 399
+ L YF A N +T I P + N T L +L + N
Sbjct: 198 --LTSLHYFTAYVNQITDITP--VANXTR----------------------LNSLKIGNN 231
Query: 400 RLQGTVPKSIANCKMLEVLNLGNNQFSD 427
++ P +AN L L +G NQ SD
Sbjct: 232 KITDLSP--LANLSQLTWLEIGTNQISD 257
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 227 PMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNL 286
P LE L L + K+ +I L ++L L L +NQI R +P + R++ L L LS N
Sbjct: 132 PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQIRRIVP--LARLT--KLQNLYLSKNH 187
Query: 287 LVGFQGPYSIPALRFIDLSSHQ 308
+ + + L ++L S +
Sbjct: 188 ISDLRALRGLKNLDVLELFSQE 209
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 52/106 (49%), Gaps = 9/106 (8%)
Query: 40 AASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLV 99
+A++F +L L L S T++P+++ N+S+L L+LS +P ++ S +L
Sbjct: 240 SANIFKYDFLTRLYLNGNSL--TELPAEIKNLSNLRVLDLSHNRLTS-LPAELGSCFQLK 296
Query: 100 ALDFSFNQFSGSISSIRWE--HLLNLVYAVLSDNSLNGSIPRSMFE 143
F F ++++ WE +L NL + + N L + + E
Sbjct: 297 YFYF----FDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE 338
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 44/105 (41%), Gaps = 13/105 (12%)
Query: 245 LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGP--YSIPALRFI 302
L+ LQ L LS N I + ++ L LNLSHN +G Q P L +
Sbjct: 343 LEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELL 402
Query: 303 DLSSHQLRGNIHQLPN---------NLIY--IDFSNNNFTSSIPA 336
DL+ +L N Q P NL Y +D SN + + +P
Sbjct: 403 DLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPV 447
>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
pdb|3O53|B Chain B, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain
Length = 317
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 7/111 (6%)
Query: 248 QSQLQYLYLSENQISREIPNWI-WRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSS 306
+S++QYL L N+I + N+ S L LNL +N + +G L+ +DLSS
Sbjct: 143 RSRVQYLDLKLNEI--DTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSS 200
Query: 307 HQLR--GNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGL 355
++L G Q + +I NN + F L +F NG
Sbjct: 201 NKLAFMGPEFQSAAGVTWISLRNNKLV--LIEKALRFSQNLEHFDLRGNGF 249
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Query: 200 NLGNLAKLDLSYNSLAVDESSRNYSFSPMLE---LLNLASCKLREIPNLKNQSQLQYLYL 256
NL + +L+LS N L +N S L+ L+L S ++ ++ L S LQ LYL
Sbjct: 83 NLTKITELELSGNPL------KNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYL 136
Query: 257 SENQISREIP 266
NQI+ P
Sbjct: 137 DLNQITNISP 146
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 13/128 (10%)
Query: 227 PMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNL 286
P LE L L + K+ +I L ++L L L +NQIS +P + L L LS N
Sbjct: 134 PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNH 189
Query: 287 LVGFQGPYSIPALRFIDLSSHQ-LRGNI-HQ----LPNNLIYIDFSNNNFTSSIPADTGN 340
+ + + L ++L S + L I HQ +PN + D S T I +D G+
Sbjct: 190 ISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGS--LVTPEIISDDGD 247
Query: 341 F-MPRLRY 347
+ P +++
Sbjct: 248 YEKPNVKW 255
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 13/128 (10%)
Query: 227 PMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNL 286
P LE L L + K+ +I L ++L L L +NQIS +P + L L LS N
Sbjct: 131 PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNH 186
Query: 287 LVGFQGPYSIPALRFIDLSSHQ-LRGNI-HQ----LPNNLIYIDFSNNNFTSSIPADTGN 340
+ + + L ++L S + L I HQ +PN + D S T I +D G+
Sbjct: 187 ISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGS--LVTPEIISDDGD 244
Query: 341 F-MPRLRY 347
+ P +++
Sbjct: 245 YEKPNVKW 252
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 227 PMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNL 286
P LE L L + K+ +I L ++L L L +NQIS +P + L L LS N
Sbjct: 129 PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNH 184
Query: 287 LVGFQGPYSIPALRFIDLSSHQ 308
+ + + L ++L S +
Sbjct: 185 ISDLRALAGLKNLDVLELFSQE 206
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 227 PMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNL 286
P LE L L + K+ +I L ++L L L +NQIS +P + L L LS N
Sbjct: 152 PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNH 207
Query: 287 LVGFQGPYSIPALRFIDLSSHQ 308
+ + + L ++L S +
Sbjct: 208 ISDLRALAGLKNLDVLELFSQE 229
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 227 PMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNL 286
P LE L L + K+ +I L ++L L L +NQIS +P + L L LS N
Sbjct: 152 PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNH 207
Query: 287 LVGFQGPYSIPALRFIDLSSHQ 308
+ + + L ++L S +
Sbjct: 208 ISDLRALAGLKNLDVLELFSQE 229
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 227 PMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNL 286
P LE L L + K+ +I L ++L L L +NQIS +P + L L LS N
Sbjct: 152 PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNH 207
Query: 287 LVGFQGPYSIPALRFIDLSSHQ 308
+ + + L ++L S +
Sbjct: 208 ISDLRALAGLKNLDVLELFSQE 229
>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 487
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 7/110 (6%)
Query: 248 QSQLQYLYLSENQISREIPNWI-WRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSS 306
+S++QYL L N+I + N+ S L LNL +N + +G L+ +DLSS
Sbjct: 143 RSRVQYLDLKLNEI--DTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFAKLKTLDLSS 200
Query: 307 HQLR--GNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNG 354
++L G Q + +I NN + F L +F NG
Sbjct: 201 NKLAFMGPEFQSAAGVTWISLRNNKLV--LIEKALRFSQNLEHFDLRGNG 248
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 9/70 (12%)
Query: 200 NLGNLAKLDLSYNSLAVDESSRNYSFSPMLE---LLNLASCKLREIPNLKNQSQLQYLYL 256
NL + +L+LS N L +N S L+ L+L S ++ ++ L S LQ LYL
Sbjct: 89 NLTKITELELSGNPL------KNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYL 142
Query: 257 SENQISREIP 266
NQI+ P
Sbjct: 143 DLNQITNISP 152
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 40/150 (26%), Positives = 60/150 (40%), Gaps = 33/150 (22%)
Query: 199 LNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSE 258
L+LG L KL+ Y S E N L+ LNL C ++++PNL L+ L +S
Sbjct: 176 LDLGELKKLE--YISEGAFEGLFN------LKYLNLGMCNIKDMPNLTPLVGLEELEMSG 227
Query: 259 NQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPN 318
N P F G S+ L ++ + N
Sbjct: 228 NHFPEIRPG---------------------SFHGLSSLKKLWVMNSQVSLIERNAFDGLA 266
Query: 319 NLIYIDFSNNNFTSSIPADTGNFMPRLRYF 348
+L+ ++ ++NN SS+P D F P LRY
Sbjct: 267 SLVELNLAHNNL-SSLPHDL--FTP-LRYL 292
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 227 PMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNL 286
P LE L L + K+ +I L ++L L L +NQIS +P + L L LS N
Sbjct: 132 PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNH 187
Query: 287 LVGFQGPYSIPALRFIDLSSHQ 308
+ + + L ++L S +
Sbjct: 188 ISDLRALAGLKNLDVLELFSQE 209
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 28.5 bits (62), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 227 PMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNL 286
P LE L L + K+ +I L ++L L L +NQIS +P + L L LS N
Sbjct: 134 PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNH 189
Query: 287 LVGFQGPYSIPALRFIDLSSHQ 308
+ + + L ++L S +
Sbjct: 190 ISDLRALAGLKNLDVLELFSQE 211
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 227 PMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNL 286
P LE L L + K+ +I L ++L L L +NQIS +P + L L LS N
Sbjct: 154 PQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNH 209
Query: 287 LVGFQGPYSIPALRFIDLSSHQ 308
+ + + L ++L S +
Sbjct: 210 ISDLRALAGLKNLDVLELFSQE 231
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,527,740
Number of Sequences: 62578
Number of extensions: 427086
Number of successful extensions: 1326
Number of sequences better than 100.0: 64
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 40
Number of HSP's that attempted gapping in prelim test: 1066
Number of HSP's gapped (non-prelim): 213
length of query: 440
length of database: 14,973,337
effective HSP length: 102
effective length of query: 338
effective length of database: 8,590,381
effective search space: 2903548778
effective search space used: 2903548778
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)