Query 045270
Match_columns 440
No_of_seqs 232 out of 2791
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 11:33:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045270.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/045270hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 2.1E-45 4.6E-50 382.5 30.2 425 1-440 49-550 (968)
2 PLN00113 leucine-rich repeat r 100.0 1.9E-41 4.1E-46 352.9 27.9 403 21-439 140-573 (968)
3 KOG4194 Membrane glycoprotein 100.0 1.1E-36 2.4E-41 273.5 9.4 382 22-422 53-448 (873)
4 KOG4194 Membrane glycoprotein 100.0 2.3E-35 5.1E-40 265.0 5.5 362 22-400 79-450 (873)
5 KOG0472 Leucine-rich repeat pr 100.0 7.6E-34 1.7E-38 244.4 -7.3 380 22-426 69-541 (565)
6 KOG0472 Leucine-rich repeat pr 100.0 4.9E-33 1.1E-37 239.4 -9.7 391 22-440 46-531 (565)
7 KOG0444 Cytoskeletal regulator 100.0 1.6E-31 3.6E-36 242.5 -1.9 378 21-421 7-394 (1255)
8 KOG0444 Cytoskeletal regulator 100.0 2E-31 4.2E-36 242.0 -2.0 369 43-431 3-380 (1255)
9 KOG0618 Serine/threonine phosp 99.9 2.3E-29 5E-34 237.9 -2.2 388 22-426 46-489 (1081)
10 KOG0618 Serine/threonine phosp 99.9 1.4E-27 3E-32 226.0 -2.5 387 22-428 22-467 (1081)
11 PLN03210 Resistant to P. syrin 99.9 4.6E-22 1E-26 208.2 24.2 269 154-436 612-892 (1153)
12 PLN03210 Resistant to P. syrin 99.9 7.5E-22 1.6E-26 206.6 24.3 354 21-399 532-903 (1153)
13 KOG4237 Extracellular matrix p 99.9 1.8E-24 3.9E-29 186.5 0.9 252 21-287 67-358 (498)
14 PRK15387 E3 ubiquitin-protein 99.9 2.1E-21 4.5E-26 189.4 17.1 264 123-434 203-466 (788)
15 PRK15387 E3 ubiquitin-protein 99.8 9.2E-20 2E-24 178.0 18.3 258 72-380 201-458 (788)
16 PRK15370 E3 ubiquitin-protein 99.8 5.1E-18 1.1E-22 166.9 15.1 246 121-426 178-428 (754)
17 PRK15370 E3 ubiquitin-protein 99.8 7E-18 1.5E-22 165.9 13.3 247 96-380 178-428 (754)
18 KOG4237 Extracellular matrix p 99.7 3.2E-20 7E-25 160.5 -3.4 292 64-402 61-359 (498)
19 cd00116 LRR_RI Leucine-rich re 99.7 2.3E-17 4.9E-22 150.9 3.0 42 43-84 19-63 (319)
20 KOG0617 Ras suppressor protein 99.7 2.2E-18 4.8E-23 132.3 -3.1 158 21-195 33-190 (264)
21 cd00116 LRR_RI Leucine-rich re 99.6 8E-17 1.7E-21 147.2 2.8 84 342-425 220-319 (319)
22 KOG0617 Ras suppressor protein 99.5 1.2E-15 2.5E-20 117.4 -3.6 160 43-243 29-189 (264)
23 PLN03150 hypothetical protein; 99.3 4.5E-12 9.7E-17 124.6 10.6 128 2-133 391-527 (623)
24 KOG3207 Beta-tubulin folding c 99.3 3.3E-13 7.2E-18 119.1 0.1 215 42-263 116-340 (505)
25 KOG3207 Beta-tubulin folding c 99.2 1.4E-12 3E-17 115.2 -0.2 203 199-403 118-340 (505)
26 PF14580 LRR_9: Leucine-rich r 99.2 2.5E-11 5.4E-16 97.8 4.8 133 41-186 13-149 (175)
27 KOG1909 Ran GTPase-activating 99.2 3.5E-12 7.5E-17 109.6 -0.6 247 21-287 30-310 (382)
28 KOG1909 Ran GTPase-activating 99.1 3.5E-12 7.5E-17 109.6 -1.9 227 42-287 25-282 (382)
29 PF14580 LRR_9: Leucine-rich r 99.1 1.6E-10 3.4E-15 93.2 7.3 120 297-420 19-147 (175)
30 KOG0532 Leucine-rich repeat (L 99.1 9.8E-12 2.1E-16 113.5 -1.2 213 25-259 54-270 (722)
31 KOG1259 Nischarin, modulator o 99.1 3.9E-11 8.6E-16 101.2 1.9 108 317-428 306-414 (490)
32 KOG4658 Apoptotic ATPase [Sign 99.1 1.4E-10 3.1E-15 116.7 6.2 126 22-162 524-651 (889)
33 KOG0532 Leucine-rich repeat (L 99.1 9.6E-12 2.1E-16 113.5 -2.4 174 230-433 78-253 (722)
34 KOG1259 Nischarin, modulator o 99.0 5.5E-11 1.2E-15 100.3 1.7 106 200-310 282-387 (490)
35 COG4886 Leucine-rich repeat (L 99.0 7.9E-10 1.7E-14 104.0 6.1 191 206-404 97-292 (394)
36 COG4886 Leucine-rich repeat (L 98.9 1.6E-09 3.5E-14 102.0 7.1 199 51-268 97-296 (394)
37 KOG4658 Apoptotic ATPase [Sign 98.9 1.2E-09 2.5E-14 110.2 5.4 230 21-265 545-786 (889)
38 PLN03150 hypothetical protein; 98.8 7E-09 1.5E-13 102.3 8.3 106 74-188 420-526 (623)
39 PF13855 LRR_8: Leucine rich r 98.8 3.8E-09 8.3E-14 69.9 3.4 61 318-379 1-61 (61)
40 KOG2120 SCF ubiquitin ligase, 98.8 9.4E-11 2E-15 98.8 -5.9 210 21-237 159-373 (419)
41 KOG2982 Uncharacterized conser 98.8 3.8E-09 8.3E-14 89.2 2.4 214 42-263 40-263 (418)
42 PF13855 LRR_8: Leucine rich r 98.7 7.8E-09 1.7E-13 68.4 3.2 39 68-106 21-59 (61)
43 KOG0531 Protein phosphatase 1, 98.7 1.3E-09 2.8E-14 102.7 -1.2 244 153-429 72-321 (414)
44 KOG2120 SCF ubiquitin ligase, 98.7 1.1E-09 2.3E-14 92.6 -2.8 228 21-260 136-374 (419)
45 KOG2982 Uncharacterized conser 98.5 1.5E-08 3.2E-13 85.8 0.2 225 25-257 49-287 (418)
46 KOG4341 F-box protein containi 98.5 2.8E-09 6.1E-14 94.2 -4.2 234 21-260 138-383 (483)
47 KOG4341 F-box protein containi 98.5 6E-09 1.3E-13 92.1 -3.1 33 391-423 403-436 (483)
48 KOG0531 Protein phosphatase 1, 98.5 1.4E-08 3.1E-13 95.7 -1.6 213 200-425 70-289 (414)
49 KOG1859 Leucine-rich repeat pr 98.4 6.4E-09 1.4E-13 98.2 -7.1 123 277-403 166-293 (1096)
50 COG5238 RNA1 Ran GTPase-activa 98.4 4.5E-08 9.7E-13 81.9 -1.5 197 93-290 89-318 (388)
51 KOG1859 Leucine-rich repeat pr 98.3 1.5E-08 3.2E-13 95.9 -5.4 204 71-288 83-292 (1096)
52 COG5238 RNA1 Ran GTPase-activa 98.3 1.3E-07 2.8E-12 79.2 -0.2 167 116-286 87-283 (388)
53 PRK15386 type III secretion pr 98.2 9.5E-06 2.1E-10 74.0 10.5 56 198-259 48-104 (426)
54 KOG1644 U2-associated snRNP A' 98.2 4.3E-06 9.3E-11 67.2 5.8 104 153-259 42-150 (233)
55 KOG3665 ZYG-1-like serine/thre 98.1 7.8E-07 1.7E-11 87.8 0.6 34 94-130 171-204 (699)
56 KOG4579 Leucine-rich repeat (L 98.1 3.5E-07 7.6E-12 68.5 -1.5 112 319-434 54-167 (177)
57 KOG3665 ZYG-1-like serine/thre 98.0 1.9E-06 4.1E-11 85.1 2.0 140 21-166 122-263 (699)
58 PF12799 LRR_4: Leucine Rich r 98.0 7.9E-06 1.7E-10 49.3 3.5 40 343-383 1-40 (44)
59 PF12799 LRR_4: Leucine Rich r 98.0 8.3E-06 1.8E-10 49.2 3.1 36 73-109 2-37 (44)
60 PRK15386 type III secretion pr 97.9 3.6E-05 7.7E-10 70.3 7.5 156 225-399 50-210 (426)
61 KOG1644 U2-associated snRNP A' 97.9 1.7E-05 3.7E-10 63.8 4.8 110 71-190 41-153 (233)
62 KOG4579 Leucine-rich repeat (L 97.8 2.4E-06 5.3E-11 64.1 -1.8 91 297-390 53-146 (177)
63 PF13306 LRR_5: Leucine rich r 97.4 0.00034 7.5E-09 54.2 5.9 116 318-440 12-129 (129)
64 PF13306 LRR_5: Leucine rich r 97.3 0.00097 2.1E-08 51.6 6.9 60 42-104 7-66 (129)
65 KOG2739 Leucine-rich acidic nu 97.2 0.00023 4.9E-09 60.0 2.3 38 121-165 91-128 (260)
66 KOG2123 Uncharacterized conser 97.1 7.5E-05 1.6E-09 63.3 -1.4 97 318-419 19-123 (388)
67 KOG1947 Leucine rich repeat pr 97.0 8.9E-05 1.9E-09 72.0 -1.5 114 45-165 186-307 (482)
68 KOG2123 Uncharacterized conser 96.9 5.5E-05 1.2E-09 64.0 -3.3 85 344-430 20-105 (388)
69 KOG1947 Leucine rich repeat pr 96.8 0.00016 3.4E-09 70.3 -2.0 14 341-354 360-373 (482)
70 KOG2739 Leucine-rich acidic nu 96.7 0.00091 2E-08 56.5 2.2 103 153-258 43-152 (260)
71 PF00560 LRR_1: Leucine Rich R 96.4 0.0012 2.7E-08 32.9 0.8 22 414-436 1-22 (22)
72 KOG3864 Uncharacterized conser 95.1 0.0071 1.5E-07 49.2 0.4 81 344-424 102-187 (221)
73 PF08263 LRRNT_2: Leucine rich 94.8 0.014 3E-07 35.0 1.1 18 1-18 24-43 (43)
74 PF00560 LRR_1: Leucine Rich R 94.6 0.014 3E-07 29.1 0.7 12 74-85 2-13 (22)
75 KOG3864 Uncharacterized conser 94.3 0.0097 2.1E-07 48.4 -0.6 83 21-105 101-185 (221)
76 PF13504 LRR_7: Leucine rich r 94.0 0.037 8.1E-07 25.5 1.3 11 369-379 3-13 (17)
77 PF13516 LRR_6: Leucine Rich r 93.2 0.019 4.2E-07 29.2 -0.4 21 413-433 2-22 (24)
78 KOG0473 Leucine-rich repeat pr 92.1 0.0062 1.3E-07 50.6 -4.8 82 21-108 42-123 (326)
79 KOG4308 LRR-containing protein 91.4 0.0026 5.7E-08 60.5 -8.9 85 343-427 204-304 (478)
80 smart00369 LRR_TYP Leucine-ric 91.2 0.24 5.2E-06 25.6 2.3 18 367-384 2-19 (26)
81 smart00370 LRR Leucine-rich re 91.2 0.24 5.2E-06 25.6 2.3 18 367-384 2-19 (26)
82 KOG0473 Leucine-rich repeat pr 86.4 0.021 4.6E-07 47.5 -5.7 88 42-134 37-124 (326)
83 KOG4308 LRR-containing protein 81.6 0.018 3.8E-07 55.0 -9.4 166 21-190 115-303 (478)
84 smart00365 LRR_SD22 Leucine-ri 80.3 1.6 3.5E-05 22.6 1.8 16 367-382 2-17 (26)
85 smart00368 LRR_RI Leucine rich 78.9 1.2 2.6E-05 23.6 1.1 14 391-404 4-17 (28)
86 KOG4242 Predicted myosin-I-bin 73.2 10 0.00022 35.8 6.0 16 367-382 440-455 (553)
87 smart00364 LRR_BAC Leucine-ric 70.1 3.6 7.9E-05 21.3 1.5 17 228-244 3-19 (26)
88 KOG3763 mRNA export factor TAP 68.9 3.1 6.8E-05 39.8 1.9 84 341-426 216-312 (585)
89 KOG3763 mRNA export factor TAP 65.0 3.3 7.1E-05 39.7 1.2 34 226-259 217-254 (585)
90 smart00367 LRR_CC Leucine-rich 64.9 4.5 9.8E-05 20.8 1.3 18 412-429 1-19 (26)
91 KOG4242 Predicted myosin-I-bin 49.8 61 0.0013 30.9 6.5 109 21-133 165-280 (553)
92 PF05725 FNIP: FNIP Repeat; I 28.0 75 0.0016 18.8 2.6 7 344-350 13-19 (44)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.1e-45 Score=382.51 Aligned_cols=425 Identities=32% Similarity=0.490 Sum_probs=229.0
Q ss_pred CCCCCCCCCcceeeeeeCCCCceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchh-cCCCCcEEEc
Q 045270 1 MQWRQSTDCCDWSGVDCDEAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLA-NISSLTYLNL 79 (440)
Q Consensus 1 ~~w~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~-~l~~L~~L~l 79 (440)
++|+...++|.|.||+|+..++|+.|+++++.+.+..+. .+..+++|+.|++++|.+... +|..+. .+++|++|++
T Consensus 49 ~~w~~~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~~--~~~~l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~L 125 (968)
T PLN00113 49 SNWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISS--AIFRLPYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNL 125 (968)
T ss_pred CCCCCCCCCCcCcceecCCCCcEEEEEecCCCccccCCh--HHhCCCCCCEEECCCCccCCc-CChHHhccCCCCCEEEC
Confidence 369888999999999999878999999999998887765 788888999999888887654 555443 5666666666
Q ss_pred ccCcccc----------------------CCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCC
Q 045270 80 SDAGFAG----------------------HIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSI 137 (440)
Q Consensus 80 ~~~~~~~----------------------~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 137 (440)
++|.+.+ .+|..+.++++|++|++++|.+.+.++. .+..+++|++|++++|.+.+.+
T Consensus 126 s~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~n~l~~~~ 204 (968)
T PLN00113 126 SNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN-SLTNLTSLEFLTLASNQLVGQI 204 (968)
T ss_pred cCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCCh-hhhhCcCCCeeeccCCCCcCcC
Confidence 6655543 4444455555555555555555433333 3455555555555555555555
Q ss_pred CccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCccccc
Q 045270 138 PRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVD 217 (440)
Q Consensus 138 ~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 217 (440)
|..+..+ ++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+...
T Consensus 205 p~~l~~l--------~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~ 275 (968)
T PLN00113 205 PRELGQM--------KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIP-SSLGNLKNLQYLFLYQNKLSGP 275 (968)
T ss_pred ChHHcCc--------CCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccC-hhHhCCCCCCEEECcCCeeecc
Confidence 5554443 456666666666555555556666666666666665543322 3455555555555555555433
Q ss_pred CCccccCCccccceeecCCCCCC-CCCC-CcccCcccEEeccCcccccccCccccccc----------------------
Q 045270 218 ESSRNYSFSPMLELLNLASCKLR-EIPN-LKNQSQLQYLYLSENQISREIPNWIWRVS---------------------- 273 (440)
Q Consensus 218 ~~~~~~~~~~~L~~L~l~~~~l~-~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---------------------- 273 (440)
.+.. +..+++|+.|++++|.+. .+|. +..+++|+.|++++|.+.+..|..+....
T Consensus 276 ~p~~-l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~ 354 (968)
T PLN00113 276 IPPS-IFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK 354 (968)
T ss_pred Cchh-HhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhC
Confidence 2222 334444555555555443 2222 34444444444444444443333332211
Q ss_pred ccceeEEEccCcccccccCC--ccCCceeEEEcCCccccCcccC---CCCCccEEEccCCcccccCCccccccCCCcceE
Q 045270 274 VVGLHCLNLSHNLLVGFQGP--YSIPALRFIDLSSHQLRGNIHQ---LPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYF 348 (440)
Q Consensus 274 ~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~---~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L 348 (440)
.++|+.|++++|.+....+. ..+++++.+++.+|.+.+..+. .+++|+.|++++|.+.+.+|..+.. ++.|+.|
T Consensus 355 ~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~-l~~L~~L 433 (968)
T PLN00113 355 HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTK-LPLVYFL 433 (968)
T ss_pred CCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhc-CCCCCEE
Confidence 12244444444433221111 1122333333333333222211 1234445555555444444433332 4444444
Q ss_pred ecccccccccchhhhhccC-----------------------CCCEEEcCCCcCCCC-Cchhh-hccccEEECCCCcccC
Q 045270 349 CAANNGLTGIIPASLCNAT-----------------------TLSLLDLSNNSFMKK-SDAFL-NCLLQTLDLNGNRLQG 403 (440)
Q Consensus 349 ~l~~~~l~~~~~~~~~~~~-----------------------~L~~L~l~~n~i~~~-~~~~~-~~~L~~L~l~~n~~~~ 403 (440)
++++|.+.+..+..+..++ +|+.|++++|.+... +..+. ..+|+.|++++|.+.+
T Consensus 434 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 513 (968)
T PLN00113 434 DISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSG 513 (968)
T ss_pred ECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCCccChhhhhhhccCEEECcCCccee
Confidence 4444444444443333344 444444444444433 22211 2346666666666666
Q ss_pred CchhhhhcCCCCcEEECCCCcccccCcccccCCCCCC
Q 045270 404 TVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSLH 440 (440)
Q Consensus 404 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 440 (440)
..|+.+.++++|+.|++++|.+++.+|..+.++++|+
T Consensus 514 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 550 (968)
T PLN00113 514 EIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLS 550 (968)
T ss_pred eCChHHcCccCCCEEECCCCcccccCChhHhCcccCC
Confidence 6666666666677777777776666666666666553
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1.9e-41 Score=352.94 Aligned_cols=403 Identities=32% Similarity=0.470 Sum_probs=226.8
Q ss_pred CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCce
Q 045270 21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVA 100 (440)
Q Consensus 21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 100 (440)
.++++|++++|.+.+..|. .++.+++|++|++++|.+... +|..++++++|++|++++|.+.+.+|..+.++++|++
T Consensus 140 ~~L~~L~Ls~n~~~~~~p~--~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~ 216 (968)
T PLN00113 140 PNLETLDLSNNMLSGEIPN--DIGSFSSLKVLDLGGNVLVGK-IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216 (968)
T ss_pred CCCCEEECcCCcccccCCh--HHhcCCCCCEEECccCccccc-CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence 3455555555555555554 566667777777766666544 6666666777777777777666666666677777777
Q ss_pred ecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCcc
Q 045270 101 LDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLT 180 (440)
Q Consensus 101 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 180 (440)
|++++|.+.+.++. .+..+++|++|++++|.+.+.+|..+..+ ++|++|++++|.+.+..|..+..+++|+
T Consensus 217 L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~l~~~~p~~l~~l--------~~L~~L~L~~n~l~~~~p~~l~~l~~L~ 287 (968)
T PLN00113 217 IYLGYNNLSGEIPY-EIGGLTSLNHLDLVYNNLTGPIPSSLGNL--------KNLQYLFLYQNKLSGPIPPSIFSLQKLI 287 (968)
T ss_pred EECcCCccCCcCCh-hHhcCCCCCEEECcCceeccccChhHhCC--------CCCCEEECcCCeeeccCchhHhhccCcC
Confidence 77777766654444 36666777777777776666666666544 5666666666666655666666666666
Q ss_pred EEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCC-CCCC-CcccCcccEEeccC
Q 045270 181 SLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR-EIPN-LKNQSQLQYLYLSE 258 (440)
Q Consensus 181 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~l~~-~~~~~~L~~L~l~~ 258 (440)
+|++++|.+.+..+ ..+..+++|+.|++++|.+....+.. +..+++|+.|++.+|.+. .+|. +..+++|+.|++++
T Consensus 288 ~L~Ls~n~l~~~~p-~~~~~l~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~ 365 (968)
T PLN00113 288 SLDLSDNSLSGEIP-ELVIQLQNLEILHLFSNNFTGKIPVA-LTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLST 365 (968)
T ss_pred EEECcCCeeccCCC-hhHcCCCCCcEEECCCCccCCcCChh-HhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCC
Confidence 66666666653332 34556666666666666655443332 445555666666666554 3333 44555555555555
Q ss_pred cccccccCcccccc----------------------cccceeEEEccCcccccccCC--ccCCceeEEEcCCccccCccc
Q 045270 259 NQISREIPNWIWRV----------------------SVVGLHCLNLSHNLLVGFQGP--YSIPALRFIDLSSHQLRGNIH 314 (440)
Q Consensus 259 ~~~~~~~~~~~~~~----------------------~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~ 314 (440)
|.+.+..|..+... ..++|+.|++++|.+....+. ..++.|+.+++++|.+.+..+
T Consensus 366 n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~ 445 (968)
T PLN00113 366 NNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRIN 445 (968)
T ss_pred CeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccC
Confidence 55544444333211 122355555555544332221 234555555555555443332
Q ss_pred C---CCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCC-Cchhh-hc
Q 045270 315 Q---LPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKK-SDAFL-NC 389 (440)
Q Consensus 315 ~---~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~~-~~ 389 (440)
. .+++|+.|++++|.+.+.+|..+. .++|+.|++++|.+.+..|..+..+++|+.|++++|.+... |..+. ..
T Consensus 446 ~~~~~l~~L~~L~L~~n~~~~~~p~~~~--~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 523 (968)
T PLN00113 446 SRKWDMPSLQMLSLARNKFFGGLPDSFG--SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCK 523 (968)
T ss_pred hhhccCCCCcEEECcCceeeeecCcccc--cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCcc
Confidence 2 234555555555555544443321 34555566666655555555555566666666666655543 32222 23
Q ss_pred cccEEECCCCcccCCchhhhhcCCCCcEEECCCCcccccCcccccCCCCC
Q 045270 390 LLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSL 439 (440)
Q Consensus 390 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L 439 (440)
+|+.|++++|.+++..|..+..+++|+.|++++|++++.+|..+.++++|
T Consensus 524 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L 573 (968)
T PLN00113 524 KLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESL 573 (968)
T ss_pred CCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCccc
Confidence 46666666666665555556666666666666666665566555555444
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.1e-36 Score=273.51 Aligned_cols=382 Identities=21% Similarity=0.239 Sum_probs=279.0
Q ss_pred ceEEEeeccceeecccCCCcccc--ccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCc
Q 045270 22 HVIGLDLSTESISGGIENAASLF--SLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLV 99 (440)
Q Consensus 22 ~l~~L~l~~~~~~~~~~~~~~~~--~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 99 (440)
+.+-+|.+...+....-. .+. -.+.-+.|++++|++... -+..|.++++|+++++..|.++ .+|.......+|+
T Consensus 53 ~~~lldcs~~~lea~~~~--~l~g~lp~~t~~LdlsnNkl~~i-d~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~ 128 (873)
T KOG4194|consen 53 NTRLLDCSDRELEAIDKS--RLKGFLPSQTQTLDLSNNKLSHI-DFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLE 128 (873)
T ss_pred CceeeecCcccccccccc--ccCCcCccceeeeeccccccccC-cHHHHhcCCcceeeeeccchhh-hccccccccccee
Confidence 456677777765421111 111 223556689999888776 5667888999999999988887 7887777777799
Q ss_pred eecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCc
Q 045270 100 ALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKL 179 (440)
Q Consensus 100 ~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 179 (440)
.|+|.+|.+. .+....+..++.|+.|+|+.|.++ .+|..-+. .-.++++|++++|.+...-...|..+.+|
T Consensus 129 ~L~L~~N~I~-sv~se~L~~l~alrslDLSrN~is-~i~~~sfp-------~~~ni~~L~La~N~It~l~~~~F~~lnsL 199 (873)
T KOG4194|consen 129 KLDLRHNLIS-SVTSEELSALPALRSLDLSRNLIS-EIPKPSFP-------AKVNIKKLNLASNRITTLETGHFDSLNSL 199 (873)
T ss_pred EEeeeccccc-cccHHHHHhHhhhhhhhhhhchhh-cccCCCCC-------CCCCceEEeeccccccccccccccccchh
Confidence 9999999888 666667888899999999999887 55554432 22689999999999986666778888899
Q ss_pred cEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCC--CcccCcccEEecc
Q 045270 180 TSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLS 257 (440)
Q Consensus 180 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~ 257 (440)
..|.+++|+++ ..+...|+.+++|+.|++..|.+....... |..+++|+.|.+..|.+..+.. |..+.++++|++.
T Consensus 200 ~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~lt-FqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~ 277 (873)
T KOG4194|consen 200 LTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLT-FQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLE 277 (873)
T ss_pred eeeecccCccc-ccCHHHhhhcchhhhhhccccceeeehhhh-hcCchhhhhhhhhhcCcccccCcceeeecccceeecc
Confidence 99999999998 888888999999999999999886544444 7788999999999999998877 8889999999999
Q ss_pred CcccccccCcccccccccceeEEEccCcccccccCC--ccCCceeEEEcCCccccCcccCC---CCCccEEEccCCcccc
Q 045270 258 ENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGP--YSIPALRFIDLSSHQLRGNIHQL---PNNLIYIDFSNNNFTS 332 (440)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~L~~~~~~~ 332 (440)
.|.+...-..++++... |+.|++++|.|..+... ..+++|++|+++.|++....... +..|++|.|+.|.+.
T Consensus 278 ~N~l~~vn~g~lfgLt~--L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~- 354 (873)
T KOG4194|consen 278 TNRLQAVNEGWLFGLTS--LEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSID- 354 (873)
T ss_pred cchhhhhhcccccccch--hhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchH-
Confidence 99888777777776665 88888888888776554 34677777777777665443332 456677777777665
Q ss_pred cCCccccccCCCcceEecccccccc---cchhhhhccCCCCEEEcCCCcCCCCCchhh--hccccEEECCCCcccCCchh
Q 045270 333 SIPADTGNFMPRLRYFCAANNGLTG---IIPASLCNATTLSLLDLSNNSFMKKSDAFL--NCLLQTLDLNGNRLQGTVPK 407 (440)
Q Consensus 333 ~~~~~~~~~~~~L~~L~l~~~~l~~---~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~--~~~L~~L~l~~n~~~~~~~~ 407 (440)
.+....+.++.+|+.|+++.|.+.. .....|.+++.|+.|++.+|+++.++...+ ...|+.|||.+|.+....|.
T Consensus 355 ~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~n 434 (873)
T KOG4194|consen 355 HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPN 434 (873)
T ss_pred HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccc
Confidence 5555555556777777777776542 234456666777777777777766654333 34577777777777766666
Q ss_pred hhhcCCCCcEEECCC
Q 045270 408 SIANCKMLEVLNLGN 422 (440)
Q Consensus 408 ~~~~l~~L~~L~l~~ 422 (440)
+|..+ +|++|-+..
T Consensus 435 AFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 435 AFEPM-ELKELVMNS 448 (873)
T ss_pred ccccc-hhhhhhhcc
Confidence 67666 666666543
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.3e-35 Score=264.97 Aligned_cols=362 Identities=25% Similarity=0.242 Sum_probs=303.6
Q ss_pred ceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCcee
Q 045270 22 HVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVAL 101 (440)
Q Consensus 22 ~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 101 (440)
.++.||+++|.+....+. .|.++++|+++++..|.+.. +|...+...+|+.|+|.+|.|.+.-..++..++.||.|
T Consensus 79 ~t~~LdlsnNkl~~id~~--~f~nl~nLq~v~l~~N~Lt~--IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrsl 154 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFE--FFYNLPNLQEVNLNKNELTR--IPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSL 154 (873)
T ss_pred ceeeeeccccccccCcHH--HHhcCCcceeeeeccchhhh--cccccccccceeEEeeeccccccccHHHHHhHhhhhhh
Confidence 578899999999876655 89999999999999888854 78777778889999999999998888899999999999
Q ss_pred cCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccE
Q 045270 102 DFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTS 181 (440)
Q Consensus 102 ~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 181 (440)
||+.|.++ .++...+..-.++++|+|+.|.|+......+. .+.+|.+|.++.|+++...+..|.++++|+.
T Consensus 155 DLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~--------~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~ 225 (873)
T KOG4194|consen 155 DLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFD--------SLNSLLTLKLSRNRITTLPQRSFKRLPKLES 225 (873)
T ss_pred hhhhchhh-cccCCCCCCCCCceEEeecccccccccccccc--------ccchheeeecccCcccccCHHHhhhcchhhh
Confidence 99999998 66555678888999999999999855555553 3468999999999999555566777999999
Q ss_pred EeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCC--CcccCcccEEeccCc
Q 045270 182 LLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSEN 259 (440)
Q Consensus 182 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~ 259 (440)
|++..|++. .+..-+|.++++|+.|.+..|.+....... |..+..+++|++..|+++.+.. +.+++.|+.|++++|
T Consensus 226 LdLnrN~ir-ive~ltFqgL~Sl~nlklqrN~I~kL~DG~-Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N 303 (873)
T KOG4194|consen 226 LDLNRNRIR-IVEGLTFQGLPSLQNLKLQRNDISKLDDGA-FYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN 303 (873)
T ss_pred hhcccccee-eehhhhhcCchhhhhhhhhhcCcccccCcc-eeeecccceeecccchhhhhhcccccccchhhhhccchh
Confidence 999999997 555667999999999999999998777766 6678899999999999998765 889999999999999
Q ss_pred ccccccCcccccccccceeEEEccCcccccccCC--ccCCceeEEEcCCccccC---cccCCCCCccEEEccCCcccccC
Q 045270 260 QISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGP--YSIPALRFIDLSSHQLRG---NIHQLPNNLIYIDFSNNNFTSSI 334 (440)
Q Consensus 260 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~---~~~~~~~~L~~L~L~~~~~~~~~ 334 (440)
.|...-++.-. -..+|+.|++++|.++.+.+. ..+..|++|.++.|++.- ..+....+|++|+|+.|.+...+
T Consensus 304 aI~rih~d~Ws--ftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~I 381 (873)
T KOG4194|consen 304 AIQRIHIDSWS--FTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCI 381 (873)
T ss_pred hhheeecchhh--hcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEE
Confidence 98765444332 234699999999999998876 348899999999998763 33444679999999999886444
Q ss_pred C--ccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCC-CchhhhccccEEECCCCc
Q 045270 335 P--ADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKK-SDAFLNCLLQTLDLNGNR 400 (440)
Q Consensus 335 ~--~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~~~~~L~~L~l~~n~ 400 (440)
- ...+..++.|+.|.+.+|++..+....|.++++|++|++.+|.|.++ +.++..-.|++|.++.-.
T Consensus 382 EDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSss 450 (873)
T KOG4194|consen 382 EDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSS 450 (873)
T ss_pred ecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccc
Confidence 3 33456699999999999999988899999999999999999999998 666666679999886543
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=7.6e-34 Score=244.41 Aligned_cols=380 Identities=23% Similarity=0.342 Sum_probs=249.1
Q ss_pred ceEEEeeccceeecccCCCccccccCCCCeEEecCCccCC---------------------CccccchhcCCCCcEEEcc
Q 045270 22 HVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNG---------------------TQIPSKLANISSLTYLNLS 80 (440)
Q Consensus 22 ~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~---------------------~~l~~~~~~l~~L~~L~l~ 80 (440)
-++++++.+|...+ .|+ +++.+..+..++.+++++.. ..+++.++.+-.|+.++..
T Consensus 69 ~l~vl~~~~n~l~~-lp~--aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~ 145 (565)
T KOG0472|consen 69 CLTVLNVHDNKLSQ-LPA--AIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDAT 145 (565)
T ss_pred ceeEEEeccchhhh-CCH--HHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhcc
Confidence 46677777776654 222 34444444444444444421 1144455555555555555
Q ss_pred cCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEc
Q 045270 81 DAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDL 160 (440)
Q Consensus 81 ~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l 160 (440)
+|++. ..|.++.++.+|..+++.+|.++. .++..+. ++.|++++...|.+. .+|..++.+ .+|+.|++
T Consensus 146 ~N~i~-slp~~~~~~~~l~~l~~~~n~l~~-l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l--------~~L~~LyL 213 (565)
T KOG0472|consen 146 NNQIS-SLPEDMVNLSKLSKLDLEGNKLKA-LPENHIA-MKRLKHLDCNSNLLE-TLPPELGGL--------ESLELLYL 213 (565)
T ss_pred ccccc-cCchHHHHHHHHHHhhccccchhh-CCHHHHH-HHHHHhcccchhhhh-cCChhhcch--------hhhHHHHh
Confidence 55555 555566666666666666666663 3332333 777777777777776 777777655 57777888
Q ss_pred CCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCC
Q 045270 161 SGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR 240 (440)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 240 (440)
..|++. .+| .|.++..|+++.++.|.+. ..+....+++.++..|++..|++...+.. ...+.+|++|++++|.++
T Consensus 214 ~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke~Pde--~clLrsL~rLDlSNN~is 288 (565)
T KOG0472|consen 214 RRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKEVPDE--ICLLRSLERLDLSNNDIS 288 (565)
T ss_pred hhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccccCchH--HHHhhhhhhhcccCCccc
Confidence 888887 666 6778888888888888776 67777777888888888888888765544 445677888888888888
Q ss_pred CCCC-CcccCcccEEeccCcccccc-------------------------------------cCccc--ccccccceeEE
Q 045270 241 EIPN-LKNQSQLQYLYLSENQISRE-------------------------------------IPNWI--WRVSVVGLHCL 280 (440)
Q Consensus 241 ~l~~-~~~~~~L~~L~l~~~~~~~~-------------------------------------~~~~~--~~~~~~~L~~L 280 (440)
.+|. ++++ +|+.|-+.||.+... .+.+. ......+.+.|
T Consensus 289 ~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL 367 (565)
T KOG0472|consen 289 SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKIL 367 (565)
T ss_pred cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhh
Confidence 8877 7777 888888888766310 00000 00111233444
Q ss_pred EccCcccccccCC-cc---CCceeEEEcCCccccCcccC--------------------------CCCCccEEEccCCcc
Q 045270 281 NLSHNLLVGFQGP-YS---IPALRFIDLSSHQLRGNIHQ--------------------------LPNNLIYIDFSNNNF 330 (440)
Q Consensus 281 ~l~~~~~~~~~~~-~~---~~~L~~L~l~~~~~~~~~~~--------------------------~~~~L~~L~L~~~~~ 330 (440)
+++.-.++.++.. +. -.-...+++++|++.+.... .+++|..|+|++|.+
T Consensus 368 ~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~L 447 (565)
T KOG0472|consen 368 DVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLL 447 (565)
T ss_pred cccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchh
Confidence 4544444444332 11 22356677777776542211 145777888887777
Q ss_pred cccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCch-hh-hccccEEECCCCcccCCchhh
Q 045270 331 TSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDA-FL-NCLLQTLDLNGNRLQGTVPKS 408 (440)
Q Consensus 331 ~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~-~~-~~~L~~L~l~~n~~~~~~~~~ 408 (440)
. .+|.+++. +-.|+.|+++.|+|. ..|+++..+..++.+-.++|++..++.. .. ..+|.+||+.+|.+. .+|..
T Consensus 448 n-~LP~e~~~-lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~ 523 (565)
T KOG0472|consen 448 N-DLPEEMGS-LVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPI 523 (565)
T ss_pred h-hcchhhhh-hhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChh
Confidence 6 77777776 666888888888777 5777777777777777777888877544 22 456999999999998 66777
Q ss_pred hhcCCCCcEEECCCCccc
Q 045270 409 IANCKMLEVLNLGNNQFS 426 (440)
Q Consensus 409 ~~~l~~L~~L~l~~n~~~ 426 (440)
+++|++|++|++.||+|.
T Consensus 524 LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 524 LGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hccccceeEEEecCCccC
Confidence 999999999999999996
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.96 E-value=4.9e-33 Score=239.45 Aligned_cols=391 Identities=28% Similarity=0.382 Sum_probs=254.4
Q ss_pred ceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCcee
Q 045270 22 HVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVAL 101 (440)
Q Consensus 22 ~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 101 (440)
.+..+++++|.+....+ .+.++..|.+|+++.++... +|.+++.+..++.++.++|.+. .+|..+..++.|+++
T Consensus 46 ~l~~lils~N~l~~l~~---dl~nL~~l~vl~~~~n~l~~--lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l 119 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVLRE---DLKNLACLTVLNVHDNKLSQ--LPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKL 119 (565)
T ss_pred chhhhhhccCchhhccH---hhhcccceeEEEeccchhhh--CCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhh
Confidence 34789999999876444 58899999999999999854 7999999999999999999998 899999999999999
Q ss_pred cCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccE
Q 045270 102 DFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTS 181 (440)
Q Consensus 102 ~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 181 (440)
++++|.+...++ .++.+..++.++..+|+++ ..|+.++.+ .++..+++.+|.+. ..|.....++.|++
T Consensus 120 ~~s~n~~~el~~--~i~~~~~l~dl~~~~N~i~-slp~~~~~~--------~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ 187 (565)
T KOG0472|consen 120 DCSSNELKELPD--SIGRLLDLEDLDATNNQIS-SLPEDMVNL--------SKLSKLDLEGNKLK-ALPENHIAMKRLKH 187 (565)
T ss_pred hccccceeecCc--hHHHHhhhhhhhccccccc-cCchHHHHH--------HHHHHhhccccchh-hCCHHHHHHHHHHh
Confidence 999999884444 3788889999999999998 888888765 45555555555555 33333333555555
Q ss_pred EeccccccccccchhhHhcCCCCcEEEcCCCccc----------------------ccCCccccCCccccceeecCCCCC
Q 045270 182 LLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLA----------------------VDESSRNYSFSPMLELLNLASCKL 239 (440)
Q Consensus 182 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----------------------~~~~~~~~~~~~~L~~L~l~~~~l 239 (440)
|+...|.+. .+++ .++.+.+|+.|++..|++. ..+... ...++++..|++.+|++
T Consensus 188 ld~~~N~L~-tlP~-~lg~l~~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~-~~~L~~l~vLDLRdNkl 264 (565)
T KOG0472|consen 188 LDCNSNLLE-TLPP-ELGGLESLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEH-LKHLNSLLVLDLRDNKL 264 (565)
T ss_pred cccchhhhh-cCCh-hhcchhhhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHH-hcccccceeeecccccc
Confidence 555555443 3332 2444555555555555443 333222 33444455555555555
Q ss_pred CCCCC-CcccCcccEEeccCcccccccCcccccccccceeEEEccCccccccc---------------------------
Q 045270 240 REIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQ--------------------------- 291 (440)
Q Consensus 240 ~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--------------------------- 291 (440)
+++|. +..+++|+.||+++|.++ ..|...... +|+.|.+.+|.+.++.
T Consensus 265 ke~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl---hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~s 340 (565)
T KOG0472|consen 265 KEVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL---HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQS 340 (565)
T ss_pred ccCchHHHHhhhhhhhcccCCccc-cCCcccccc---eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCC
Confidence 55554 444445555555555444 233333221 3444444444331100
Q ss_pred ----------------CCccCCceeEEEcCCccccCcccCCCC-----CccEEEccCCccc-------------------
Q 045270 292 ----------------GPYSIPALRFIDLSSHQLRGNIHQLPN-----NLIYIDFSNNNFT------------------- 331 (440)
Q Consensus 292 ----------------~~~~~~~L~~L~l~~~~~~~~~~~~~~-----~L~~L~L~~~~~~------------------- 331 (440)
....+-+.+.|++++-+++....+.+. -+..+++++|.+.
T Consensus 341 e~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~ls 420 (565)
T KOG0472|consen 341 EGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLS 420 (565)
T ss_pred cccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhh
Confidence 000012223333333333322211111 1445555555433
Q ss_pred ----ccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchhhh-ccccEEECCCCcccCCch
Q 045270 332 ----SSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLN-CLLQTLDLNGNRLQGTVP 406 (440)
Q Consensus 332 ----~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~-~~L~~L~l~~n~~~~~~~ 406 (440)
+.+|..+.+ +++|+.|++++|-+. ..|..++.+-.|+.|+++.|.+...|.+... ..++.+-.++|++....+
T Consensus 421 nn~isfv~~~l~~-l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~ 498 (565)
T KOG0472|consen 421 NNKISFVPLELSQ-LQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDP 498 (565)
T ss_pred cCccccchHHHHh-hhcceeeecccchhh-hcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccCh
Confidence 133333334 788889999988887 5788888888899999999988888877764 447777778888887777
Q ss_pred hhhhcCCCCcEEECCCCcccccCcccccCCCCCC
Q 045270 407 KSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSLH 440 (440)
Q Consensus 407 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 440 (440)
..+.+|.+|..||+.+|.+ ..+|..+++|.+|+
T Consensus 499 ~~l~nm~nL~tLDL~nNdl-q~IPp~LgnmtnL~ 531 (565)
T KOG0472|consen 499 SGLKNMRNLTTLDLQNNDL-QQIPPILGNMTNLR 531 (565)
T ss_pred HHhhhhhhcceeccCCCch-hhCChhhcccccee
Confidence 7799999999999999998 46788899999885
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=1.6e-31 Score=242.51 Aligned_cols=378 Identities=27% Similarity=0.349 Sum_probs=285.3
Q ss_pred CceEEEeeccceeecc-cCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCc
Q 045270 21 GHVIGLDLSTESISGG-IENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLV 99 (440)
Q Consensus 21 ~~l~~L~l~~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 99 (440)
+-||.+|+++|+++|. .|. ....++.++.|.+....+ ..+|+.++.+.+|++|.+.+|++. .+-..++.++.||
T Consensus 7 pFVrGvDfsgNDFsg~~FP~--~v~qMt~~~WLkLnrt~L--~~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPH--DVEQMTQMTWLKLNRTKL--EQVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLR 81 (1255)
T ss_pred ceeecccccCCcCCCCcCch--hHHHhhheeEEEechhhh--hhChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhH
Confidence 4578899999999854 444 788889999999876666 447999999999999999999988 5666788999999
Q ss_pred eecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccc-cccccccC
Q 045270 100 ALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIP-VSVFELKK 178 (440)
Q Consensus 100 ~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~ 178 (440)
.+.+..|.++....+..+-++..|..|+|++|++. +.|..+... +++.+|++++|.|. ++| ..|.+++.
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~A--------Kn~iVLNLS~N~Ie-tIPn~lfinLtD 151 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYA--------KNSIVLNLSYNNIE-TIPNSLFINLTD 151 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhh--------cCcEEEEcccCccc-cCCchHHHhhHh
Confidence 99999998876665556888899999999999998 888887654 68889999999998 455 45567888
Q ss_pred ccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCC--CCCCC-CcccCcccEEe
Q 045270 179 LTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKL--REIPN-LKNQSQLQYLY 255 (440)
Q Consensus 179 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l--~~l~~-~~~~~~L~~L~ 255 (440)
|-.|++++|++. ..++ ..+.+..|++|.+++|.+....... +..+++|+.|++++++- ..+|. +..+.+|..+|
T Consensus 152 LLfLDLS~NrLe-~LPP-Q~RRL~~LqtL~Ls~NPL~hfQLrQ-LPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvD 228 (1255)
T KOG0444|consen 152 LLFLDLSNNRLE-MLPP-QIRRLSMLQTLKLSNNPLNHFQLRQ-LPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVD 228 (1255)
T ss_pred Hhhhccccchhh-hcCH-HHHHHhhhhhhhcCCChhhHHHHhc-CccchhhhhhhcccccchhhcCCCchhhhhhhhhcc
Confidence 889999999886 5554 4678889999999999876554444 55677788888888854 36666 88888999999
Q ss_pred ccCcccccccCcccccccccceeEEEccCcccccccCC-ccCCceeEEEcCCccccCcccCC--CCCccEEEccCCccc-
Q 045270 256 LSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGP-YSIPALRFIDLSSHQLRGNIHQL--PNNLIYIDFSNNNFT- 331 (440)
Q Consensus 256 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~--~~~L~~L~L~~~~~~- 331 (440)
++.|.+. .+|+.+.. .++|++|++++|.++.+... ....++++|+++.|++....... ++.|+.|.+.+|+++
T Consensus 229 lS~N~Lp-~vPecly~--l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~F 305 (1255)
T KOG0444|consen 229 LSENNLP-IVPECLYK--LRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTF 305 (1255)
T ss_pred ccccCCC-cchHHHhh--hhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccc
Confidence 9988875 46666644 34588999999988887655 44678888888888877654443 467777777777764
Q ss_pred ccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchhh-hccccEEECCCCcccCCchhhhh
Q 045270 332 SSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFL-NCLLQTLDLNGNRLQGTVPKSIA 410 (440)
Q Consensus 332 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~ 410 (440)
.-+|..+++ +.+|+.+...+|.+. .+|++++.|..|+.|.++.|.+.+.|.+.. .+-|+.||+..|+-....|.--.
T Consensus 306 eGiPSGIGK-L~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~d 383 (1255)
T KOG0444|consen 306 EGIPSGIGK-LIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPKPND 383 (1255)
T ss_pred cCCccchhh-hhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCCCcch
Confidence 236666766 778888888888777 778888888888888888888888776655 45588888887765544442211
Q ss_pred cCCCCcEEECC
Q 045270 411 NCKMLEVLNLG 421 (440)
Q Consensus 411 ~l~~L~~L~l~ 421 (440)
.-++|+.-++.
T Consensus 384 a~~~lefYNID 394 (1255)
T KOG0444|consen 384 ARKKLEFYNID 394 (1255)
T ss_pred hhhcceeeecc
Confidence 22455555554
No 8
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.96 E-value=2e-31 Score=242.04 Aligned_cols=369 Identities=28% Similarity=0.400 Sum_probs=315.1
Q ss_pred ccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhccccc
Q 045270 43 LFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLN 122 (440)
Q Consensus 43 ~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~ 122 (440)
.+-++..|-+|+++|.+.+...|..+..+.+++.|.|..+.+. .+|..++.+.+|++|.++.|++. .+.. .+..++.
T Consensus 3 tgVLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhG-ELs~Lp~ 79 (1255)
T KOG0444|consen 3 TGVLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHG-ELSDLPR 79 (1255)
T ss_pred ccccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhh-hhccchh
Confidence 4567888999999999998779999999999999999999988 89999999999999999999987 3332 4888999
Q ss_pred ceEEEecCCccC-CCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcC
Q 045270 123 LVYAVLSDNSLN-GSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNL 201 (440)
Q Consensus 123 L~~L~l~~~~~~-~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 201 (440)
|+.+.+.+|++. ..+|..++.+ ..|.+|+++.|++. ..|..+...+++-.|++++|++. .++...|-++
T Consensus 80 LRsv~~R~N~LKnsGiP~diF~l--------~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinL 149 (1255)
T KOG0444|consen 80 LRSVIVRDNNLKNSGIPTDIFRL--------KDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINL 149 (1255)
T ss_pred hHHHhhhccccccCCCCchhccc--------ccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhh
Confidence 999999999874 3688888877 68999999999998 89999989999999999999997 8888889999
Q ss_pred CCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCC--CCcccCcccEEeccCcccc-cccCccccccccccee
Q 045270 202 GNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIP--NLKNQSQLQYLYLSENQIS-REIPNWIWRVSVVGLH 278 (440)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~--~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~~~L~ 278 (440)
..|-.|++++|.+...++. ...+..|++|.+++|.+..+. .+..+++|+.|.+++.+-+ ..+|..+.... +|.
T Consensus 150 tDLLfLDLS~NrLe~LPPQ--~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~--NL~ 225 (1255)
T KOG0444|consen 150 TDLLFLDLSNNRLEMLPPQ--IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLH--NLR 225 (1255)
T ss_pred HhHhhhccccchhhhcCHH--HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhh--hhh
Confidence 9999999999999877665 567888999999999876443 3667788888999887532 34666665544 499
Q ss_pred EEEccCcccccccCC-ccCCceeEEEcCCccccCccc--CCCCCccEEEccCCcccccCCccccccCCCcceEecccccc
Q 045270 279 CLNLSHNLLVGFQGP-YSIPALRFIDLSSHQLRGNIH--QLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGL 355 (440)
Q Consensus 279 ~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~--~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 355 (440)
.++++.|.+..++.. ..+++|+.|++++|+++.... ....++++|+++.|.++ .+|..+++ +++|+.|+..+|++
T Consensus 226 dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt-~LP~avcK-L~kL~kLy~n~NkL 303 (1255)
T KOG0444|consen 226 DVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLT-VLPDAVCK-LTKLTKLYANNNKL 303 (1255)
T ss_pred hccccccCCCcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhc-cchHHHhh-hHHHHHHHhccCcc
Confidence 999999999888775 568999999999999886433 33679999999999998 89998888 99999999999987
Q ss_pred c-ccchhhhhccCCCCEEEcCCCcCCCCCchhhhc-cccEEECCCCcccCCchhhhhcCCCCcEEECCCCcccccCcc
Q 045270 356 T-GIIPASLCNATTLSLLDLSNNSFMKKSDAFLNC-LLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPC 431 (440)
Q Consensus 356 ~-~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 431 (440)
+ +-+|..++.+.+|+.+..++|.+.-.|....-| .|+.|.|+.|.+. ..|+++.-++.|+.||+..|+-..-.|+
T Consensus 304 ~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPPK 380 (1255)
T KOG0444|consen 304 TFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPPK 380 (1255)
T ss_pred cccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCCC
Confidence 5 237889999999999999999998888777644 4999999999999 7889999999999999999987655543
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.94 E-value=2.3e-29 Score=237.95 Aligned_cols=388 Identities=27% Similarity=0.317 Sum_probs=285.6
Q ss_pred ceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCcee
Q 045270 22 HVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVAL 101 (440)
Q Consensus 22 ~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 101 (440)
++.+||+++|.+.. .|. .+..+++|+.|+++.|.+.. .|.+..++.+|+++.|.+|.+. ..|..+..+.+|++|
T Consensus 46 ~L~~l~lsnn~~~~-fp~--~it~l~~L~~ln~s~n~i~~--vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~L 119 (1081)
T KOG0618|consen 46 KLKSLDLSNNQISS-FPI--QITLLSHLRQLNLSRNYIRS--VPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYL 119 (1081)
T ss_pred eeEEeecccccccc-CCc--hhhhHHHHhhcccchhhHhh--Cchhhhhhhcchhheeccchhh-cCchhHHhhhccccc
Confidence 47889999998753 554 68889999999999888854 6788888999999999999887 889999999999999
Q ss_pred cCCCCcccCccchhhhccccc-------------------ceEEEecCCccCCCCCcccccccc-ccc----------cC
Q 045270 102 DFSFNQFSGSISSIRWEHLLN-------------------LVYAVLSDNSLNGSIPRSMFEFPI-FSN----------AS 151 (440)
Q Consensus 102 ~L~~~~~~~~~~~~~~~~l~~-------------------L~~L~l~~~~~~~~~~~~~~~l~~-l~~----------~~ 151 (440)
++++|.+...+.. +..++. ++.+++..+.+.+.++..+..+.. +.. ..
T Consensus 120 dlS~N~f~~~Pl~--i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~ 197 (1081)
T KOG0618|consen 120 DLSFNHFGPIPLV--IEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSN 197 (1081)
T ss_pred ccchhccCCCchh--HHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhh
Confidence 9999987633322 222222 444444444444444444443322 000 12
Q ss_pred cccccEEEcCCCccCC-------------------ccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCC
Q 045270 152 SSALDTLDLSGNRLRG-------------------SIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYN 212 (440)
Q Consensus 152 ~~~L~~L~l~~~~~~~-------------------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 212 (440)
+.+|+.+....|.+.. ... ..+...+|++++++.+++. ..+ ..+..+.+|+.+++..|
T Consensus 198 ~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~-~~p~p~nl~~~dis~n~l~-~lp-~wi~~~~nle~l~~n~N 274 (1081)
T KOG0618|consen 198 LANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLD-VHPVPLNLQYLDISHNNLS-NLP-EWIGACANLEALNANHN 274 (1081)
T ss_pred ccchhhhhhhhcccceEEecCcchheeeeccCcceeec-cccccccceeeecchhhhh-cch-HHHHhcccceEecccch
Confidence 2223333322222210 000 0112356777777777775 455 56778888888888888
Q ss_pred cccccCCccccCCccccceeecCCCCCCCCCC-CcccCcccEEeccCcccccccCcccccccccceeEEEccCccccccc
Q 045270 213 SLAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQ 291 (440)
Q Consensus 213 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 291 (440)
.+...... .....+|+.|.+..|.+..+|. ....+.|+.|++..|++. ..|+.+.......++.++.+.+.+..++
T Consensus 275 ~l~~lp~r--i~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp 351 (1081)
T KOG0618|consen 275 RLVALPLR--ISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLP 351 (1081)
T ss_pred hHHhhHHH--HhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccc
Confidence 88544433 4567789999999999998888 555899999999999885 5666665555556788888888887776
Q ss_pred CC--ccCCceeEEEcCCccccCcccCC---CCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhcc
Q 045270 292 GP--YSIPALRFIDLSSHQLRGNIHQL---PNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNA 366 (440)
Q Consensus 292 ~~--~~~~~L~~L~l~~~~~~~~~~~~---~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~ 366 (440)
.. ...+.|+.|++.+|++.+..... +..|+.|+|++|.+. .+|......++.|+.|++++|+++ .+|+.+..+
T Consensus 352 ~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~ 429 (1081)
T KOG0618|consen 352 SYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANL 429 (1081)
T ss_pred cccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhh
Confidence 54 45889999999999999876554 678999999999998 889888877999999999999999 678999999
Q ss_pred CCCCEEEcCCCcCCCCCchhhhccccEEECCCCcccCC-chhhhhcCCCCcEEECCCCccc
Q 045270 367 TTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGT-VPKSIANCKMLEVLNLGNNQFS 426 (440)
Q Consensus 367 ~~L~~L~l~~n~i~~~~~~~~~~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~ 426 (440)
+.|++|....|.+...|.....+.|+.+|++.|.+... +++.... |+|++||++||...
T Consensus 430 ~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l 489 (1081)
T KOG0618|consen 430 GRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRL 489 (1081)
T ss_pred hhhHHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCccc
Confidence 99999999999999999777788899999999999854 3333332 89999999999854
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.92 E-value=1.4e-27 Score=226.03 Aligned_cols=387 Identities=26% Similarity=0.310 Sum_probs=241.0
Q ss_pred ceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCcee
Q 045270 22 HVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVAL 101 (440)
Q Consensus 22 ~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 101 (440)
+++.|+++.|.+-....+ ......+|+.|++++|.+.. .|..+..+.+|+.|.++.|.+. ..|.+..++.+|++|
T Consensus 22 ~~~~ln~~~N~~l~~pl~--~~~~~v~L~~l~lsnn~~~~--fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~l 96 (1081)
T KOG0618|consen 22 ALQILNLRRNSLLSRPLE--FVEKRVKLKSLDLSNNQISS--FPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYL 96 (1081)
T ss_pred HHHhhhccccccccCchH--HhhheeeeEEeecccccccc--CCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhh
Confidence 478889999877653322 56667779999999998854 6888999999999999999998 788899999999999
Q ss_pred cCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccc-----------cCcccccEEEcCCCccCCccc
Q 045270 102 DFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSN-----------ASSSALDTLDLSGNRLRGSIP 170 (440)
Q Consensus 102 ~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~-----------~~~~~L~~L~l~~~~~~~~~~ 170 (440)
.|.+|.+. ..|. .+..+.+|++|++++|.+. .+|..+..+..... ..-..++.+++..+.+.+.++
T Consensus 97 nL~~n~l~-~lP~-~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~ 173 (1081)
T KOG0618|consen 97 NLKNNRLQ-SLPA-SISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFL 173 (1081)
T ss_pred eeccchhh-cCch-hHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchh
Confidence 99999987 4443 4889999999999999987 77776665532211 011225556666666665566
Q ss_pred cccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCcc-----------------ccCCccccceee
Q 045270 171 VSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSR-----------------NYSFSPMLELLN 233 (440)
Q Consensus 171 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-----------------~~~~~~~L~~L~ 233 (440)
..+..+.. .|++.+|.+. ... +..+.+|+.+....|++....... ......+++.++
T Consensus 174 ~~i~~l~~--~ldLr~N~~~-~~d---ls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~d 247 (1081)
T KOG0618|consen 174 IDIYNLTH--QLDLRYNEME-VLD---LSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLD 247 (1081)
T ss_pred cchhhhhe--eeecccchhh-hhh---hhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeee
Confidence 55555555 6888888764 222 344455555544444432211100 011234577777
Q ss_pred cCCCCCCCCCC-CcccCcccEEeccCcccccccCcccccccccceeEEEccCcccccccCCc-cCCceeEEEcCCccccC
Q 045270 234 LASCKLREIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPY-SIPALRFIDLSSHQLRG 311 (440)
Q Consensus 234 l~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~ 311 (440)
++.+.++.+|. +..+.+|+.++...|.+. ..|..+... .+|+.+.+.+|.++.+++.. ....|++|++..|++..
T Consensus 248 is~n~l~~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~--~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~ 324 (1081)
T KOG0618|consen 248 ISHNNLSNLPEWIGACANLEALNANHNRLV-ALPLRISRI--TSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPS 324 (1081)
T ss_pred cchhhhhcchHHHHhcccceEecccchhHH-hhHHHHhhh--hhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccc
Confidence 77777777766 666777777777777764 444444332 23777777777777777664 37888888888887764
Q ss_pred cccCC----------------------------CCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhh
Q 045270 312 NIHQL----------------------------PNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASL 363 (440)
Q Consensus 312 ~~~~~----------------------------~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~ 363 (440)
..... .+.|+.|.+.+|.+++..-..+.. ++.|+.|++++|++.......+
T Consensus 325 lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~-~~hLKVLhLsyNrL~~fpas~~ 403 (1081)
T KOG0618|consen 325 LPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVN-FKHLKVLHLSYNRLNSFPASKL 403 (1081)
T ss_pred cchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhcc-ccceeeeeecccccccCCHHHH
Confidence 33211 113444444444443222221221 4455555555555543334444
Q ss_pred hccCCCCEEEcCCCcCCCCCchhhhc-cccEEECCCCcccCCchhhhhcCCCCcEEECCCCccccc
Q 045270 364 CNATTLSLLDLSNNSFMKKSDAFLNC-LLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDK 428 (440)
Q Consensus 364 ~~~~~L~~L~l~~n~i~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 428 (440)
..++.|++|++++|+++.+|.....+ .|++|...+|.+. ..| .+.+++.|+.+|++.|.++..
T Consensus 404 ~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~ 467 (1081)
T KOG0618|consen 404 RKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEV 467 (1081)
T ss_pred hchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhh
Confidence 44555555555555555554433322 2555555555555 444 466677777777777777644
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=4.6e-22 Score=208.22 Aligned_cols=269 Identities=21% Similarity=0.233 Sum_probs=117.4
Q ss_pred cccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceee
Q 045270 154 ALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLN 233 (440)
Q Consensus 154 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 233 (440)
+|++|++.++.+. .++..+..+++|+.|+++++.....++ .++.+++|+.|++++|......+.. +..+++|+.|+
T Consensus 612 ~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip--~ls~l~~Le~L~L~~c~~L~~lp~s-i~~L~~L~~L~ 687 (1153)
T PLN03210 612 NLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP--DLSMATNLETLKLSDCSSLVELPSS-IQYLNKLEDLD 687 (1153)
T ss_pred CCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC--ccccCCcccEEEecCCCCccccchh-hhccCCCCEEe
Confidence 4444444444443 333333444444444444433211222 1334444444444444322211111 33444444444
Q ss_pred cCCC-CCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEEccCcccccccCCccCCceeEEEcCCccccC-
Q 045270 234 LASC-KLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRG- 311 (440)
Q Consensus 234 l~~~-~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~- 311 (440)
+++| .++.+|....+++|+.|++++|......|.. ..+|+.|+++++.+..++....+++|++|.+.++....
T Consensus 688 L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~-----~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l 762 (1153)
T PLN03210 688 MSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDI-----STNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKL 762 (1153)
T ss_pred CCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccc-----cCCcCeeecCCCccccccccccccccccccccccchhhc
Confidence 4443 3344443224444555555544332222221 12344555555554444443344444444444321110
Q ss_pred ---------cccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcC-CC
Q 045270 312 ---------NIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSF-MK 381 (440)
Q Consensus 312 ---------~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i-~~ 381 (440)
.....+++|+.|++++|...+.+|..+.. +++|+.|++++|...+.+|..+ .+++|+.|++++|.. ..
T Consensus 763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~-L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~ 840 (1153)
T PLN03210 763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQN-LHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRT 840 (1153)
T ss_pred cccccccchhhhhccccchheeCCCCCCccccChhhhC-CCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccc
Confidence 01112345566666655544455555443 5566666666553332344333 455566666655432 22
Q ss_pred CCchhhhccccEEECCCCcccCCchhhhhcCCCCcEEECCCCcccccCcccccCC
Q 045270 382 KSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDA 436 (440)
Q Consensus 382 ~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~ 436 (440)
++.. ..+|+.|++++|.++ .+|..+..+++|+.|++++|+-...+|..+..+
T Consensus 841 ~p~~--~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L 892 (1153)
T PLN03210 841 FPDI--STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKL 892 (1153)
T ss_pred cccc--ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccc
Confidence 2221 234556666655555 345555555566666665554444444443333
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=7.5e-22 Score=206.64 Aligned_cols=354 Identities=19% Similarity=0.199 Sum_probs=201.3
Q ss_pred CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCC-----CccccchhcC-CCCcEEEcccCccccCCcccccc
Q 045270 21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNG-----TQIPSKLANI-SSLTYLNLSDAGFAGHIPLQISS 94 (440)
Q Consensus 21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----~~l~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~ 94 (440)
.+|+.+.+....+........+|..+++|+.|.+..+.... ..+|..+..+ ++|+.|.+.++.+. .+|..+ .
T Consensus 532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~ 609 (1153)
T PLN03210 532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-R 609 (1153)
T ss_pred ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-C
Confidence 45666665544443322223368888899988886543211 1256666655 45888888887776 667666 4
Q ss_pred cccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccc
Q 045270 95 MARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVF 174 (440)
Q Consensus 95 l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~ 174 (440)
..+|++|++.++.+.. ++. .+..+++|+.++++++.....+|. +. .+++|++|++++|.....+|..+.
T Consensus 610 ~~~L~~L~L~~s~l~~-L~~-~~~~l~~Lk~L~Ls~~~~l~~ip~-ls--------~l~~Le~L~L~~c~~L~~lp~si~ 678 (1153)
T PLN03210 610 PENLVKLQMQGSKLEK-LWD-GVHSLTGLRNIDLRGSKNLKEIPD-LS--------MATNLETLKLSDCSSLVELPSSIQ 678 (1153)
T ss_pred ccCCcEEECcCccccc-ccc-ccccCCCCCEEECCCCCCcCcCCc-cc--------cCCcccEEEecCCCCccccchhhh
Confidence 6788888888887763 332 256778888888887754445553 32 336788888888765557777788
Q ss_pred cccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEE
Q 045270 175 ELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYL 254 (440)
Q Consensus 175 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L 254 (440)
.+++|+.|++++|.....++.. .++++|+.|++++|......+. ...+|+.|++.++.++.+|....+++|+.|
T Consensus 679 ~L~~L~~L~L~~c~~L~~Lp~~--i~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L 752 (1153)
T PLN03210 679 YLNKLEDLDMSRCENLEILPTG--INLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIEEFPSNLRLENLDEL 752 (1153)
T ss_pred ccCCCCEEeCCCCCCcCccCCc--CCCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccccccccccccccccc
Confidence 8888888888887544344432 2677888888887754322221 245677888888877777763345566666
Q ss_pred eccCcccccccCcc------cccccccceeEEEccCccc-ccccCC-ccCCceeEEEcCCccccCcccC--CCCCccEEE
Q 045270 255 YLSENQISREIPNW------IWRVSVVGLHCLNLSHNLL-VGFQGP-YSIPALRFIDLSSHQLRGNIHQ--LPNNLIYID 324 (440)
Q Consensus 255 ~l~~~~~~~~~~~~------~~~~~~~~L~~L~l~~~~~-~~~~~~-~~~~~L~~L~l~~~~~~~~~~~--~~~~L~~L~ 324 (440)
.+.++.... .... ......++|+.|++++|.. ..++.. ..+++|+.|++++|...+.++. .+++|+.|+
T Consensus 753 ~l~~~~~~~-l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~ 831 (1153)
T PLN03210 753 ILCEMKSEK-LWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLD 831 (1153)
T ss_pred cccccchhh-ccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEE
Confidence 555432110 0000 0001123466666665532 222221 3455666666665543322222 145566666
Q ss_pred ccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCC-cCCCCCchhh-hccccEEECCCC
Q 045270 325 FSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNN-SFMKKSDAFL-NCLLQTLDLNGN 399 (440)
Q Consensus 325 L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n-~i~~~~~~~~-~~~L~~L~l~~n 399 (440)
+++|.....+|.. .++|+.|++++|.++ ..|.++..+++|+.|++++| .+..++.... ...|+.+++++|
T Consensus 832 Ls~c~~L~~~p~~----~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C 903 (1153)
T PLN03210 832 LSGCSRLRTFPDI----STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDC 903 (1153)
T ss_pred CCCCCcccccccc----ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCC
Confidence 6665443233321 345666666666655 34555666666666666553 3343332221 233555565555
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.89 E-value=1.8e-24 Score=186.51 Aligned_cols=252 Identities=24% Similarity=0.268 Sum_probs=189.5
Q ss_pred CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEccc-CccccCCcccccccccCc
Q 045270 21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSD-AGFAGHIPLQISSMARLV 99 (440)
Q Consensus 21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~ 99 (440)
...+.|+|..|.|+...+. +|+.++.||.||++.|.+... -|++|.+++.|..|-+.+ |.|+......|.++..|+
T Consensus 67 ~~tveirLdqN~I~~iP~~--aF~~l~~LRrLdLS~N~Is~I-~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slq 143 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPG--AFKTLHRLRRLDLSKNNISFI-APDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQ 143 (498)
T ss_pred CcceEEEeccCCcccCChh--hccchhhhceecccccchhhc-ChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHH
Confidence 3788999999999976666 899999999999999999887 799999999999988877 888866666689999999
Q ss_pred eecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccC------------C
Q 045270 100 ALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLR------------G 167 (440)
Q Consensus 100 ~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~------------~ 167 (440)
.|.+.-|++. .+...++..++++..|.+.+|.+. .++...+ .....++++.+..|+.- .
T Consensus 144 rLllNan~i~-Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf-------~~l~~i~tlhlA~np~icdCnL~wla~~~a 214 (498)
T KOG4237|consen 144 RLLLNANHIN-CIRQDALRDLPSLSLLSLYDNKIQ-SICKGTF-------QGLAAIKTLHLAQNPFICDCNLPWLADDLA 214 (498)
T ss_pred HHhcChhhhc-chhHHHHHHhhhcchhcccchhhh-hhccccc-------cchhccchHhhhcCccccccccchhhhHHh
Confidence 9999999987 777778999999999999999987 5555332 23367777777776621 0
Q ss_pred ccccccccccCccEEec-------------------------cccccccccchhhHhcCCCCcEEEcCCCcccccCCccc
Q 045270 168 SIPVSVFELKKLTSLLL-------------------------SSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRN 222 (440)
Q Consensus 168 ~~~~~~~~~~~L~~L~l-------------------------~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 222 (440)
..+..+++..-..-..+ ..+......+...|+.+++|++|++++|.++.+....
T Consensus 215 ~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~a- 293 (498)
T KOG4237|consen 215 MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGA- 293 (498)
T ss_pred hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhh-
Confidence 11112222111111111 1222223455667888889999999999888776665
Q ss_pred cCCccccceeecCCCCCCCCCC--CcccCcccEEeccCcccccccCcccccccccceeEEEccCccc
Q 045270 223 YSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLL 287 (440)
Q Consensus 223 ~~~~~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 287 (440)
|.....++.|.+..|++..+.. |.++..|+.|++.+|+++...|..|.... +|.+|++-.|.+
T Consensus 294 Fe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~--~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 294 FEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF--SLSTLNLLSNPF 358 (498)
T ss_pred hcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccc--eeeeeehccCcc
Confidence 7778889999999998887766 88888899999999998877777765433 388888777654
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=2.1e-21 Score=189.36 Aligned_cols=264 Identities=25% Similarity=0.281 Sum_probs=162.1
Q ss_pred ceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCC
Q 045270 123 LVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLG 202 (440)
Q Consensus 123 L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 202 (440)
-..|+++.+.++ .+|..+. ++|+.|++.+|.+. .+|.. .++|++|++++|.++ .++. ..+
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~----------~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lt-sLP~----lp~ 262 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP----------AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLT-SLPV----LPP 262 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh----------cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccC-cccC----ccc
Confidence 444555555554 4554432 24555555555555 33321 355666666665554 3331 234
Q ss_pred CCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEEc
Q 045270 203 NLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNL 282 (440)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 282 (440)
+|+.|++.+|.+..... .++.|+.|++.+|.++.+|. .+++|+.|++++|.+.+ +|... ..|+.|.+
T Consensus 263 sL~~L~Ls~N~L~~Lp~-----lp~~L~~L~Ls~N~Lt~LP~--~p~~L~~LdLS~N~L~~-Lp~lp-----~~L~~L~L 329 (788)
T PRK15387 263 GLLELSIFSNPLTHLPA-----LPSGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLAS-LPALP-----SELCKLWA 329 (788)
T ss_pred ccceeeccCCchhhhhh-----chhhcCEEECcCCccccccc--cccccceeECCCCcccc-CCCCc-----cccccccc
Confidence 55666666665543221 12346666666666666654 23556666666666653 33211 13566666
Q ss_pred cCcccccccCCccCCceeEEEcCCccccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhh
Q 045270 283 SHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPAS 362 (440)
Q Consensus 283 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 362 (440)
++|.++.++.. ..+|+.|++++|++.. ++..+.+|+.|++++|.+. .+|.. +++|+.|++++|.+++ +|..
T Consensus 330 s~N~L~~LP~l--p~~Lq~LdLS~N~Ls~-LP~lp~~L~~L~Ls~N~L~-~LP~l----~~~L~~LdLs~N~Lt~-LP~l 400 (788)
T PRK15387 330 YNNQLTSLPTL--PSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLT-SLPAL----PSGLKELIVSGNRLTS-LPVL 400 (788)
T ss_pred ccCcccccccc--ccccceEecCCCccCC-CCCCCcccceehhhccccc-cCccc----ccccceEEecCCcccC-CCCc
Confidence 66666655432 2467777777777664 3334567888888888777 45542 4578888888888874 3432
Q ss_pred hhccCCCCEEEcCCCcCCCCCchhhhccccEEECCCCcccCCchhhhhcCCCCcEEECCCCcccccCccccc
Q 045270 363 LCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLY 434 (440)
Q Consensus 363 ~~~~~~L~~L~l~~n~i~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~ 434 (440)
.++|+.|++++|.++.+|.. ...|+.|++++|+++ .+|..+.++++|+.|++++|++++..|..+.
T Consensus 401 ---~s~L~~LdLS~N~LssIP~l--~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~ 466 (788)
T PRK15387 401 ---PSELKELMVSGNRLTSLPML--PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 466 (788)
T ss_pred ---ccCCCEEEccCCcCCCCCcc--hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHH
Confidence 35788888888888887653 346888888888888 5677788888888888888888887776653
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.84 E-value=9.2e-20 Score=177.96 Aligned_cols=258 Identities=26% Similarity=0.300 Sum_probs=141.6
Q ss_pred CCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccC
Q 045270 72 SSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNAS 151 (440)
Q Consensus 72 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~ 151 (440)
..-..|+++.+.++ .+|..+. ++|+.|++.+|.++ .++. ..++|++|++++|+++ .+|...
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~----lp~~Lk~LdLs~N~Lt-sLP~lp---------- 261 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA----LPPELRTLEVSGNQLT-SLPVLP---------- 261 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC----CCCCCcEEEecCCccC-cccCcc----------
Confidence 44667777777776 5666554 36777777777776 3332 2467777777777776 445321
Q ss_pred cccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccce
Q 045270 152 SSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLEL 231 (440)
Q Consensus 152 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 231 (440)
++|+.|++++|.+. .+|.. ..+|+.|++++|.+. .++. ..++|+.|++++|.+..... ....|+.
T Consensus 262 -~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~----~p~~L~~LdLS~N~L~~Lp~-----lp~~L~~ 326 (788)
T PRK15387 262 -PGLLELSIFSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLASLPA-----LPSELCK 326 (788)
T ss_pred -cccceeeccCCchh-hhhhc---hhhcCEEECcCCccc-cccc----cccccceeECCCCccccCCC-----Ccccccc
Confidence 46677777777665 34432 245667777777665 3332 23567777777776654321 1234666
Q ss_pred eecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEEccCcccccccCCccCCceeEEEcCCccccC
Q 045270 232 LNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRG 311 (440)
Q Consensus 232 L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 311 (440)
|.+.+|.++.+|.+ ..+|+.|++++|++++ +|... .++..|++++|.+..++.. .++|+.|++++|.+..
T Consensus 327 L~Ls~N~L~~LP~l--p~~Lq~LdLS~N~Ls~-LP~lp-----~~L~~L~Ls~N~L~~LP~l--~~~L~~LdLs~N~Lt~ 396 (788)
T PRK15387 327 LWAYNNQLTSLPTL--PSGLQELSVSDNQLAS-LPTLP-----SELYKLWAYNNRLTSLPAL--PSGLKELIVSGNRLTS 396 (788)
T ss_pred cccccCcccccccc--ccccceEecCCCccCC-CCCCC-----cccceehhhccccccCccc--ccccceEEecCCcccC
Confidence 67777776666642 2456677777766653 33221 2355666666665544432 2345555555554442
Q ss_pred cccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCC
Q 045270 312 NIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFM 380 (440)
Q Consensus 312 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~ 380 (440)
++..+.+|+.|++++|.+. .+|.. +..|+.|++++|.++ .+|..+..+++|+.|++++|++.
T Consensus 397 -LP~l~s~L~~LdLS~N~Ls-sIP~l----~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 397 -LPVLPSELKELMVSGNRLT-SLPML----PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred -CCCcccCCCEEEccCCcCC-CCCcc----hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCC
Confidence 2222344555555555544 33321 234444555555554 33444445555555555555444
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.77 E-value=5.1e-18 Score=166.86 Aligned_cols=246 Identities=26% Similarity=0.400 Sum_probs=133.6
Q ss_pred ccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhc
Q 045270 121 LNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILN 200 (440)
Q Consensus 121 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 200 (440)
.+...|+++++.++ .+|..+. +.++.|++++|.+. .+|..+. ++|++|++++|.+. .++.. +
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip----------~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~-l-- 239 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP----------EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPAT-L-- 239 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc----------cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChh-h--
Confidence 45677888877776 5665442 46778888888777 5565443 47788888777775 44422 1
Q ss_pred CCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCC-CcccCcccEEeccCcccccccCcccccccccceeE
Q 045270 201 LGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHC 279 (440)
Q Consensus 201 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 279 (440)
..+|+.|++++|.+...+.. ...+|+.|++++|.++.+|. + +++|+.|++++|.++. +|..+. .+|+.
T Consensus 240 ~~~L~~L~Ls~N~L~~LP~~----l~s~L~~L~Ls~N~L~~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~lp----~sL~~ 308 (754)
T PRK15370 240 PDTIQEMELSINRITELPER----LPSALQSLDLFHNKISCLPENL--PEELRYLSVYDNSIRT-LPAHLP----SGITH 308 (754)
T ss_pred hccccEEECcCCccCcCChh----HhCCCCEEECcCCccCcccccc--CCCCcEEECCCCcccc-Ccccch----hhHHH
Confidence 23567777777766533221 12356777777776666654 2 2466666666666653 332221 13555
Q ss_pred EEccCcccccccCCccCCceeEEEcCCccccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccc
Q 045270 280 LNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGII 359 (440)
Q Consensus 280 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 359 (440)
|++++|.++.++ ...+++|+.|++++|.++ .+|..+ +++|+.|++++|.++ .+
T Consensus 309 L~Ls~N~Lt~LP----------------------~~l~~sL~~L~Ls~N~Lt-~LP~~l---~~sL~~L~Ls~N~L~-~L 361 (754)
T PRK15370 309 LNVQSNSLTALP----------------------ETLPPGLKTLEAGENALT-SLPASL---PPELQVLDVSKNQIT-VL 361 (754)
T ss_pred HHhcCCccccCC----------------------ccccccceeccccCCccc-cCChhh---cCcccEEECCCCCCC-cC
Confidence 555555554433 223344555555555554 344332 245555555555555 23
Q ss_pred hhhhhccCCCCEEEcCCCcCCCCCchhhhccccEEECCCCcccCCchh----hhhcCCCCcEEECCCCccc
Q 045270 360 PASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPK----SIANCKMLEVLNLGNNQFS 426 (440)
Q Consensus 360 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~L~~L~l~~n~~~~~~~~----~~~~l~~L~~L~l~~n~~~ 426 (440)
|..+ .++|+.|++++|+++.+|... ...|+.|++++|++. .+|. .++.++.+..|++.+|+++
T Consensus 362 P~~l--p~~L~~LdLs~N~Lt~LP~~l-~~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 362 PETL--PPTITTLDVSRNALTNLPENL-PAALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred Chhh--cCCcCEEECCCCcCCCCCHhH-HHHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 3333 245556666666555554432 224555666666555 2222 2233455566666666553
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.75 E-value=7e-18 Score=165.89 Aligned_cols=247 Identities=23% Similarity=0.339 Sum_probs=176.8
Q ss_pred ccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCcccccccc
Q 045270 96 ARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFE 175 (440)
Q Consensus 96 ~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 175 (440)
.+...|+++++.++ .+|.. + .+.++.|++++|.++ .+|..+. .+|++|++++|.+. .+|..+.
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~-I--p~~L~~L~Ls~N~Lt-sLP~~l~----------~nL~~L~Ls~N~Lt-sLP~~l~- 240 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPAC-I--PEQITTLILDNNELK-SLPENLQ----------GNIKTLYANSNQLT-SIPATLP- 240 (754)
T ss_pred cCceEEEeCCCCcC-cCCcc-c--ccCCcEEEecCCCCC-cCChhhc----------cCCCEEECCCCccc-cCChhhh-
Confidence 35678999998887 44431 2 358999999999998 7776553 58999999999988 5676553
Q ss_pred ccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEe
Q 045270 176 LKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLY 255 (440)
Q Consensus 176 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~ 255 (440)
++|+.|++++|.+. .++... ..+|+.|++++|.++..+.. ..++|+.|++++|.++.+|.. -.++|+.|+
T Consensus 241 -~~L~~L~Ls~N~L~-~LP~~l---~s~L~~L~Ls~N~L~~LP~~----l~~sL~~L~Ls~N~Lt~LP~~-lp~sL~~L~ 310 (754)
T PRK15370 241 -DTIQEMELSINRIT-ELPERL---PSALQSLDLFHNKISCLPEN----LPEELRYLSVYDNSIRTLPAH-LPSGITHLN 310 (754)
T ss_pred -ccccEEECcCCccC-cCChhH---hCCCCEEECcCCccCccccc----cCCCCcEEECCCCccccCccc-chhhHHHHH
Confidence 57999999999987 555432 25799999999998754322 235899999999999988861 135799999
Q ss_pred ccCcccccccCcccccccccceeEEEccCcccccccCCccCCceeEEEcCCccccCcccCCCCCccEEEccCCcccccCC
Q 045270 256 LSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIP 335 (440)
Q Consensus 256 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~ 335 (440)
+++|.+.. +|..+ .++|+.|++++|.++.++.. .+++|+.|++++|++.......+++|+.|++++|.+. .+|
T Consensus 311 Ls~N~Lt~-LP~~l----~~sL~~L~Ls~N~Lt~LP~~-l~~sL~~L~Ls~N~L~~LP~~lp~~L~~LdLs~N~Lt-~LP 383 (754)
T PRK15370 311 VQSNSLTA-LPETL----PPGLKTLEAGENALTSLPAS-LPPELQVLDVSKNQITVLPETLPPTITTLDVSRNALT-NLP 383 (754)
T ss_pred hcCCcccc-CCccc----cccceeccccCCccccCChh-hcCcccEEECCCCCCCcCChhhcCCcCEEECCCCcCC-CCC
Confidence 99999874 45433 24689999999988876543 2467777888777766544444567777777777776 566
Q ss_pred ccccccCCCcceEecccccccccchhhh----hccCCCCEEEcCCCcCC
Q 045270 336 ADTGNFMPRLRYFCAANNGLTGIIPASL----CNATTLSLLDLSNNSFM 380 (440)
Q Consensus 336 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~----~~~~~L~~L~l~~n~i~ 380 (440)
..+ .+.|+.|++++|++. .+|..+ ..++.+..|++.+|.+.
T Consensus 384 ~~l---~~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 384 ENL---PAALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred HhH---HHHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 543 235777777777776 334333 33466677777777665
No 18
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.75 E-value=3.2e-20 Score=160.45 Aligned_cols=292 Identities=21% Similarity=0.209 Sum_probs=156.6
Q ss_pred cccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecC-CccCCCCCcccc
Q 045270 64 IPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSD-NSLNGSIPRSMF 142 (440)
Q Consensus 64 l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~ 142 (440)
+|..+. +.-..++|..|+|+...+.+|+.+++||.|+|++|.|+ .+...+|..++++..|-+.+ |+|+ .+|+..+
T Consensus 61 VP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F 136 (498)
T KOG4237|consen 61 VPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAF 136 (498)
T ss_pred CcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchh-hhhhhHh
Confidence 455554 56667777778777666777777788888888888777 66556677777777765554 6666 5555444
Q ss_pred ccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccc
Q 045270 143 EFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRN 222 (440)
Q Consensus 143 ~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 222 (440)
.++..++.|.+.-|++.....+.|..++++..|.+++|.+. .+....|..+..++.+.+..|.+...
T Consensus 137 -------~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icd----- 203 (498)
T KOG4237|consen 137 -------GGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICD----- 203 (498)
T ss_pred -------hhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccc-----
Confidence 33456666666666666555566666777777777777665 44444566666666666655543111
Q ss_pred cCCccccceeecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEEccCcccccccCCccCCceeEE
Q 045270 223 YSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFI 302 (440)
Q Consensus 223 ~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L 302 (440)
.+++.+..... .+.+ + ++...-..-..+.+..+....+..+... ++ +++ .=
T Consensus 204 -CnL~wla~~~a-~~~i-e---tsgarc~~p~rl~~~Ri~q~~a~kf~c~----~e----------sl~---------s~ 254 (498)
T KOG4237|consen 204 -CNLPWLADDLA-MNPI-E---TSGARCVSPYRLYYKRINQEDARKFLCS----LE----------SLP---------SR 254 (498)
T ss_pred -cccchhhhHHh-hchh-h---cccceecchHHHHHHHhcccchhhhhhh----HH----------hHH---------Hh
Confidence 11111110000 0000 0 1111111111122222211111111000 00 000 00
Q ss_pred EcCCccccC----cccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCc
Q 045270 303 DLSSHQLRG----NIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNS 378 (440)
Q Consensus 303 ~l~~~~~~~----~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~ 378 (440)
..+.+.... ..+..+++|++|+|++|+++ .+...+|.....++.|++..|++.......|.++..|+.|++.+|+
T Consensus 255 ~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~-~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~ 333 (498)
T KOG4237|consen 255 LSSEDFPDSICPAKCFKKLPNLRKLNLSNNKIT-RIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQ 333 (498)
T ss_pred hccccCcCCcChHHHHhhcccceEeccCCCccc-hhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCe
Confidence 000111111 11223456777777777776 4554455557777777777777776666677777777777777777
Q ss_pred CCCCCchhh--hccccEEECCCCccc
Q 045270 379 FMKKSDAFL--NCLLQTLDLNGNRLQ 402 (440)
Q Consensus 379 i~~~~~~~~--~~~L~~L~l~~n~~~ 402 (440)
|+.+....| ..+|.+|++-.|++-
T Consensus 334 it~~~~~aF~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 334 ITTVAPGAFQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred eEEEecccccccceeeeeehccCccc
Confidence 777643333 234777777766554
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.66 E-value=2.3e-17 Score=150.87 Aligned_cols=42 Identities=29% Similarity=0.221 Sum_probs=19.7
Q ss_pred ccccCCCCeEEecCCccCCC---ccccchhcCCCCcEEEcccCcc
Q 045270 43 LFSLHYLRSLNLARTSFNGT---QIPSKLANISSLTYLNLSDAGF 84 (440)
Q Consensus 43 ~~~l~~L~~L~l~~~~~~~~---~l~~~~~~l~~L~~L~l~~~~~ 84 (440)
+..++.|++++++++.+... .++..+...+.+++++++++.+
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~ 63 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNET 63 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccccc
Confidence 44445555555555554321 1233334444555555555443
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=2.2e-18 Score=132.30 Aligned_cols=158 Identities=22% Similarity=0.371 Sum_probs=135.0
Q ss_pred CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCce
Q 045270 21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVA 100 (440)
Q Consensus 21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 100 (440)
.+|++|.||+|+++. +|+ .+..+.+|+.|++++|.+.+ +|..++.++.|+.|++.-|++. ..|+.|+.+|.|+.
T Consensus 33 s~ITrLtLSHNKl~~-vpp--nia~l~nlevln~~nnqie~--lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~lev 106 (264)
T KOG0617|consen 33 SNITRLTLSHNKLTV-VPP--NIAELKNLEVLNLSNNQIEE--LPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEV 106 (264)
T ss_pred hhhhhhhcccCceee-cCC--cHHHhhhhhhhhcccchhhh--cChhhhhchhhhheecchhhhh-cCccccCCCchhhh
Confidence 689999999999986 444 68999999999999999854 7999999999999999999887 89999999999999
Q ss_pred ecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCcc
Q 045270 101 LDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLT 180 (440)
Q Consensus 101 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 180 (440)
||+.+|.+........|-.++.|+.|++++|.+. .+|..++++ ++|+.|.+..|.+. .+|..++.+..|+
T Consensus 107 ldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~l--------t~lqil~lrdndll-~lpkeig~lt~lr 176 (264)
T KOG0617|consen 107 LDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKL--------TNLQILSLRDNDLL-SLPKEIGDLTRLR 176 (264)
T ss_pred hhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhh--------cceeEEeeccCchh-hCcHHHHHHHHHH
Confidence 9999998876665556777888888999999887 888888776 68888888888877 7888888888888
Q ss_pred EEeccccccccccch
Q 045270 181 SLLLSSNNLHGTVQL 195 (440)
Q Consensus 181 ~L~l~~~~~~~~~~~ 195 (440)
+|.+.+|+++ ..++
T Consensus 177 elhiqgnrl~-vlpp 190 (264)
T KOG0617|consen 177 ELHIQGNRLT-VLPP 190 (264)
T ss_pred HHhcccceee-ecCh
Confidence 8888888886 4443
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.63 E-value=8e-17 Score=147.23 Aligned_cols=84 Identities=26% Similarity=0.293 Sum_probs=51.0
Q ss_pred CCCcceEecccccccccchhhhhc-----cCCCCEEEcCCCcCCCCCc------hhhhccccEEECCCCcccCCch----
Q 045270 342 MPRLRYFCAANNGLTGIIPASLCN-----ATTLSLLDLSNNSFMKKSD------AFLNCLLQTLDLNGNRLQGTVP---- 406 (440)
Q Consensus 342 ~~~L~~L~l~~~~l~~~~~~~~~~-----~~~L~~L~l~~n~i~~~~~------~~~~~~L~~L~l~~n~~~~~~~---- 406 (440)
+++|++|++++|.+++.....+.. .+.|++|++++|.+++... ....+.|+.+++++|.+.+...
T Consensus 220 ~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~ 299 (319)
T cd00116 220 LKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLA 299 (319)
T ss_pred cCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHH
Confidence 566777777777666433332221 2677788887777763311 1112357888888888886533
Q ss_pred hhhhcC-CCCcEEECCCCcc
Q 045270 407 KSIANC-KMLEVLNLGNNQF 425 (440)
Q Consensus 407 ~~~~~l-~~L~~L~l~~n~~ 425 (440)
..+... +.|+.+++.+|++
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 300 ESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHhhcCCchhhcccCCCCC
Confidence 333334 6788888888764
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.47 E-value=1.2e-15 Score=117.44 Aligned_cols=160 Identities=29% Similarity=0.467 Sum_probs=82.3
Q ss_pred ccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhccccc
Q 045270 43 LFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLN 122 (440)
Q Consensus 43 ~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~ 122 (440)
+..+.+++.|.+++|++.. +|..+..+.+|+.|++.+|++. .+|..++.+++|++|++.-|++.
T Consensus 29 Lf~~s~ITrLtLSHNKl~~--vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~------------- 92 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKLTV--VPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN------------- 92 (264)
T ss_pred ccchhhhhhhhcccCceee--cCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-------------
Confidence 4455566666666666633 4555666666666666666665 56666666666666666655543
Q ss_pred ceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccC-CccccccccccCccEEeccccccccccchhhHhcC
Q 045270 123 LVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLR-GSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNL 201 (440)
Q Consensus 123 L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 201 (440)
..|++++.+ +.|++|++.+|.+. ..+|..|+.+..|+-|.+++|.+. ..+ ...+.+
T Consensus 93 -------------~lprgfgs~--------p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp-~dvg~l 149 (264)
T KOG0617|consen 93 -------------ILPRGFGSF--------PALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILP-PDVGKL 149 (264)
T ss_pred -------------cCccccCCC--------chhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCC-hhhhhh
Confidence 444444433 24444555444433 234444444555555555555442 222 234444
Q ss_pred CCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCC
Q 045270 202 GNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIP 243 (440)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~ 243 (440)
++|+.|.+..|.+...+.. .+.+..|++|++.+|.++.+|
T Consensus 150 t~lqil~lrdndll~lpke--ig~lt~lrelhiqgnrl~vlp 189 (264)
T KOG0617|consen 150 TNLQILSLRDNDLLSLPKE--IGDLTRLRELHIQGNRLTVLP 189 (264)
T ss_pred cceeEEeeccCchhhCcHH--HHHHHHHHHHhcccceeeecC
Confidence 5555555544443322111 334445555555555555554
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.34 E-value=4.5e-12 Score=124.63 Aligned_cols=128 Identities=33% Similarity=0.547 Sum_probs=105.5
Q ss_pred CCCCCCCCc----ceeeeeeCCC-----CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCC
Q 045270 2 QWRQSTDCC----DWSGVDCDEA-----GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANIS 72 (440)
Q Consensus 2 ~w~~~~~~~----~~~~~~~~~~-----~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~ 72 (440)
+|+ +..|+ .|.||.|... ..|+.|+|+++.+.+..|. .+..+++|+.|++++|.+.+. +|..++.++
T Consensus 391 ~W~-g~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~--~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~ 466 (623)
T PLN03150 391 GWN-GDPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPN--DISKLRHLQSINLSGNSIRGN-IPPSLGSIT 466 (623)
T ss_pred CCC-CCCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCH--HHhCCCCCCEEECCCCcccCc-CChHHhCCC
Confidence 686 33332 6999999632 2599999999999998888 899999999999999998776 888899999
Q ss_pred CCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCcc
Q 045270 73 SLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSL 133 (440)
Q Consensus 73 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 133 (440)
+|+.|++++|.+.+.+|..++++++|++|+|++|.+.+.++...-....++..+++.+|..
T Consensus 467 ~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 467 SLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred CCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEecCCcc
Confidence 9999999999999999999999999999999999998887764333344666777777654
No 24
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.30 E-value=3.3e-13 Score=119.07 Aligned_cols=215 Identities=25% Similarity=0.214 Sum_probs=126.7
Q ss_pred cccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCcccc--CCcccccccccCceecCCCCcccCccchhhhcc
Q 045270 42 SLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAG--HIPLQISSMARLVALDFSFNQFSGSISSIRWEH 119 (440)
Q Consensus 42 ~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~ 119 (440)
.-+++..||.+.+.++.+.....-.....+++++.|+|++|-+.. .+......+|+|+.|+++.|++........-..
T Consensus 116 kQsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~ 195 (505)
T KOG3207|consen 116 KQSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLL 195 (505)
T ss_pred HhhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhh
Confidence 345677777777777766433111355667777777777775431 222233567777777777777764444434446
Q ss_pred cccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHh
Q 045270 120 LLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKIL 199 (440)
Q Consensus 120 l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 199 (440)
+++|+.|.++.|.++..-...+. ..+++|+.|.+.+|...........-+..|++|++++|.+...-.....+
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~-------~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~ 268 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWIL-------LTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVG 268 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHH-------HhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccc
Confidence 67777777777776532222221 33467777777777422122223334566777777777664222223455
Q ss_pred cCCCCcEEEcCCCcccccCCccc-----cCCccccceeecCCCCCCCCCC---CcccCcccEEeccCccccc
Q 045270 200 NLGNLAKLDLSYNSLAVDESSRN-----YSFSPMLELLNLASCKLREIPN---LKNQSQLQYLYLSENQISR 263 (440)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~l~~l~~---~~~~~~L~~L~l~~~~~~~ 263 (440)
.++.|..|+++.+.+.+...... ...+++|++|++..|++..++. +..+++|+.|.+..+.++.
T Consensus 269 ~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 269 TLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred cccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 67777777777777654433321 2445677777777777765555 4555666777766666653
No 25
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=1.4e-12 Score=115.24 Aligned_cols=203 Identities=20% Similarity=0.195 Sum_probs=130.9
Q ss_pred hcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCC----CcccCcccEEeccCcccccccCcccccccc
Q 045270 199 LNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN----LKNQSQLQYLYLSENQISREIPNWIWRVSV 274 (440)
Q Consensus 199 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~----~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 274 (440)
+++.+|+.+.+.++.+...........+++++.|+++.|-+..+.. ...+|+|+.|+++.|.+........ ....
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~-~~~l 196 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT-TLLL 196 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccc-hhhh
Confidence 4667788888888777654433345678888899998887765544 6678888888888887753322221 1234
Q ss_pred cceeEEEccCcccccccCC---ccCCceeEEEcCCcccc---CcccCCCCCccEEEccCCcccccCC-ccccccCCCcce
Q 045270 275 VGLHCLNLSHNLLVGFQGP---YSIPALRFIDLSSHQLR---GNIHQLPNNLIYIDFSNNNFTSSIP-ADTGNFMPRLRY 347 (440)
Q Consensus 275 ~~L~~L~l~~~~~~~~~~~---~~~~~L~~L~l~~~~~~---~~~~~~~~~L~~L~L~~~~~~~~~~-~~~~~~~~~L~~ 347 (440)
+++++|.++.|.++.-... ..+|+++.|++..|... ......+..|++|+|++|++. ..+ ......+|.|+.
T Consensus 197 ~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li-~~~~~~~~~~l~~L~~ 275 (505)
T KOG3207|consen 197 SHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI-DFDQGYKVGTLPGLNQ 275 (505)
T ss_pred hhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc-ccccccccccccchhh
Confidence 5588888888877632221 34788888888877421 122333667888888888776 333 222333788888
Q ss_pred Eeccccccccc-chhh-----hhccCCCCEEEcCCCcCCCCCc---hhhhccccEEECCCCcccC
Q 045270 348 FCAANNGLTGI-IPAS-----LCNATTLSLLDLSNNSFMKKSD---AFLNCLLQTLDLNGNRLQG 403 (440)
Q Consensus 348 L~l~~~~l~~~-~~~~-----~~~~~~L~~L~l~~n~i~~~~~---~~~~~~L~~L~l~~n~~~~ 403 (440)
|+++.+.+.++ .|.+ -..++.|++|+++.|+|.+++. .....+|+.|.+.+|++..
T Consensus 276 Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 276 LNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred hhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 88888877643 2222 2345778888888888866632 3335567777777777663
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.17 E-value=2.5e-11 Score=97.77 Aligned_cols=133 Identities=27% Similarity=0.318 Sum_probs=44.2
Q ss_pred ccccccCCCCeEEecCCccCCCccccchh-cCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcc
Q 045270 41 ASLFSLHYLRSLNLARTSFNGTQIPSKLA-NISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEH 119 (440)
Q Consensus 41 ~~~~~l~~L~~L~l~~~~~~~~~l~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~ 119 (440)
+.+.+...+++|+++++.+... +.++ .+.+|+.|++++|.+. .+. .+..+++|++|++++|.++ .+.......
T Consensus 13 ~~~~n~~~~~~L~L~~n~I~~I---e~L~~~l~~L~~L~Ls~N~I~-~l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~ 86 (175)
T PF14580_consen 13 AQYNNPVKLRELNLRGNQISTI---ENLGATLDKLEVLDLSNNQIT-KLE-GLPGLPRLKTLDLSNNRIS-SISEGLDKN 86 (175)
T ss_dssp --------------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH
T ss_pred cccccccccccccccccccccc---cchhhhhcCCCEEECCCCCCc-ccc-CccChhhhhhcccCCCCCC-ccccchHHh
Confidence 3566677788888888887543 3344 4678888888888887 343 5777888888888888887 443322346
Q ss_pred cccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCc---cccccccccCccEEeccc
Q 045270 120 LLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGS---IPVSVFELKKLTSLLLSS 186 (440)
Q Consensus 120 l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~ 186 (440)
+++|++|++++|++.. + ..+..+ ..+++|++|++.+|++... -...+..+|+|+.|+-..
T Consensus 87 lp~L~~L~L~~N~I~~-l-~~l~~L-----~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 87 LPNLQELYLSNNKISD-L-NELEPL-----SSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp -TT--EEE-TTS---S-C-CCCGGG-----GG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred CCcCCEEECcCCcCCC-h-HHhHHH-----HcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 7888888888888752 2 223333 3457788888888877621 112344566666665543
No 27
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.16 E-value=3.5e-12 Score=109.64 Aligned_cols=247 Identities=26% Similarity=0.254 Sum_probs=116.2
Q ss_pred CceEEEeeccceeecccCC--CccccccCCCCeEEecCCccCC--Ccccc-------chhcCCCCcEEEcccCccccCCc
Q 045270 21 GHVIGLDLSTESISGGIEN--AASLFSLHYLRSLNLARTSFNG--TQIPS-------KLANISSLTYLNLSDAGFAGHIP 89 (440)
Q Consensus 21 ~~l~~L~l~~~~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~--~~l~~-------~~~~l~~L~~L~l~~~~~~~~~~ 89 (440)
..+++|+||+|.+..+-.. +..+.+-+.|+..+++.--... ..+|+ ++-++++|++|+|++|.+....+
T Consensus 30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~ 109 (382)
T KOG1909|consen 30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGI 109 (382)
T ss_pred CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccch
Confidence 5678888888877432211 1145666788888876542211 11333 33455678888888877654444
Q ss_pred ccc----cccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCcc
Q 045270 90 LQI----SSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRL 165 (440)
Q Consensus 90 ~~~----~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~ 165 (440)
+.+ .++..|++|.|.+|.+.... ...++. -|+++. .++ .. ..-++|+++...+|++
T Consensus 110 ~~l~~ll~s~~~L~eL~L~N~Glg~~a-g~~l~~--al~~l~--~~k---k~------------~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 110 RGLEELLSSCTDLEELYLNNCGLGPEA-GGRLGR--ALFELA--VNK---KA------------ASKPKLRVFICGRNRL 169 (382)
T ss_pred HHHHHHHHhccCHHHHhhhcCCCChhH-HHHHHH--HHHHHH--HHh---cc------------CCCcceEEEEeecccc
Confidence 443 45667777777777664211 111111 000000 000 00 1113455555555544
Q ss_pred CCc----cccccccccCccEEeccccccccc---cchhhHhcCCCCcEEEcCCCcccccCCc---cccCCccccceeecC
Q 045270 166 RGS----IPVSVFELKKLTSLLLSSNNLHGT---VQLDKILNLGNLAKLDLSYNSLAVDESS---RNYSFSPMLELLNLA 235 (440)
Q Consensus 166 ~~~----~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~ 235 (440)
... ....|...+.|+.+.++.|.+... .....+..+++|+.|++..|-++..... ..+..++.|+.++++
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~ 249 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLG 249 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccc
Confidence 311 112233345555555555544210 1123344555555555555554422211 113344455566666
Q ss_pred CCCCCCCCC-------CcccCcccEEeccCcccccccCcccc--cccccceeEEEccCccc
Q 045270 236 SCKLREIPN-------LKNQSQLQYLYLSENQISREIPNWIW--RVSVVGLHCLNLSHNLL 287 (440)
Q Consensus 236 ~~~l~~l~~-------~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~ 287 (440)
+|.+..=.. -...|.|+.+.+.+|.++......+. .-..+.|++|+++.|.+
T Consensus 250 dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 250 DCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 665542111 22356666666666665432211111 01134466666666665
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.14 E-value=3.5e-12 Score=109.63 Aligned_cols=227 Identities=22% Similarity=0.216 Sum_probs=134.5
Q ss_pred cccccCCCCeEEecCCccCCCc---cccchhcCCCCcEEEcccCc---cccCCcccc-------cccccCceecCCCCcc
Q 045270 42 SLFSLHYLRSLNLARTSFNGTQ---IPSKLANISSLTYLNLSDAG---FAGHIPLQI-------SSMARLVALDFSFNQF 108 (440)
Q Consensus 42 ~~~~l~~L~~L~l~~~~~~~~~---l~~~~~~l~~L~~L~l~~~~---~~~~~~~~~-------~~l~~L~~L~L~~~~~ 108 (440)
..-.+..++++++++|.+.... +...+.+.+.|+..++++-. ....+|.++ -.+++|++++||+|.+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 4557788889999998886431 44556677888888887642 122333332 3445666666666655
Q ss_pred cCccch---hhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEecc
Q 045270 109 SGSISS---IRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLS 185 (440)
Q Consensus 109 ~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 185 (440)
...... ..+..+..|++|+|.+|.+...-...++. .|..+. ...-.+.-+.|+.+...
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~----------al~~l~---------~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR----------ALFELA---------VNKKAASKPKLRVFICG 165 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH----------HHHHHH---------HHhccCCCcceEEEEee
Confidence 433211 23444556666666666554222222221 121111 11223456889999999
Q ss_pred cccccc---ccchhhHhcCCCCcEEEcCCCcccccCC---ccccCCccccceeecCCCCCCCCCC------CcccCcccE
Q 045270 186 SNNLHG---TVQLDKILNLGNLAKLDLSYNSLAVDES---SRNYSFSPMLELLNLASCKLREIPN------LKNQSQLQY 253 (440)
Q Consensus 186 ~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~l~~l~~------~~~~~~L~~ 253 (440)
+|++.. ......|..++.|+.+.++.|.|..... ...+..+++|+.|++.+|-++.-.. ++.+++|+.
T Consensus 166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E 245 (382)
T KOG1909|consen 166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE 245 (382)
T ss_pred ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence 998752 1223467788899999999998764332 1226678889999999987763222 677788889
Q ss_pred EeccCcccccccCccccc---ccccceeEEEccCccc
Q 045270 254 LYLSENQISREIPNWIWR---VSVVGLHCLNLSHNLL 287 (440)
Q Consensus 254 L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~ 287 (440)
+++++|.+.......+.. -..|+|+.+.+.+|.+
T Consensus 246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeI 282 (382)
T KOG1909|consen 246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEI 282 (382)
T ss_pred ecccccccccccHHHHHHHHhccCCCCceeccCcchh
Confidence 999888887655554421 1233444444444444
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.13 E-value=1.6e-10 Score=93.17 Aligned_cols=120 Identities=28% Similarity=0.302 Sum_probs=35.8
Q ss_pred CceeEEEcCCccccC--cccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhh-hccCCCCEEE
Q 045270 297 PALRFIDLSSHQLRG--NIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASL-CNATTLSLLD 373 (440)
Q Consensus 297 ~~L~~L~l~~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~~~L~~L~ 373 (440)
.++++|++.++.+.. .....+.+|+.|++++|.++ .+.. + ..++.|+.|++++|.++.. .+.+ ..+++|++|.
T Consensus 19 ~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~-~l~~-l-~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~ 94 (175)
T PF14580_consen 19 VKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQIT-KLEG-L-PGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELY 94 (175)
T ss_dssp -----------------S--TT-TT--EEE-TTS--S---TT------TT--EEE--SS---S--CHHHHHH-TT--EEE
T ss_pred cccccccccccccccccchhhhhcCCCEEECCCCCCc-cccC-c-cChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEE
Confidence 344444444444432 11112345566666666655 3322 2 2256666677777766643 2233 3466677777
Q ss_pred cCCCcCCCCCchh---hhccccEEECCCCcccCCch---hhhhcCCCCcEEEC
Q 045270 374 LSNNSFMKKSDAF---LNCLLQTLDLNGNRLQGTVP---KSIANCKMLEVLNL 420 (440)
Q Consensus 374 l~~n~i~~~~~~~---~~~~L~~L~l~~n~~~~~~~---~~~~~l~~L~~L~l 420 (440)
+++|+|.++.... ..++|+.|++.+|++....- ..+..+|+|+.||-
T Consensus 95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 7776666553221 13446666666666664321 24556677776553
No 30
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.09 E-value=9.8e-12 Score=113.49 Aligned_cols=213 Identities=26% Similarity=0.307 Sum_probs=161.1
Q ss_pred EEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCC
Q 045270 25 GLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFS 104 (440)
Q Consensus 25 ~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~ 104 (440)
+|.|++-+++.....+.. ..+..-...|++.|++.. +|..++.+..|+.+.++.|.+. .+|.++.++..|.+++|+
T Consensus 54 ~l~Ls~rrlk~fpr~a~~-~~ltdt~~aDlsrNR~~e--lp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls 129 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAAS-YDLTDTVFADLSRNRFSE--LPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLS 129 (722)
T ss_pred ccccccchhhcCCCcccc-ccccchhhhhcccccccc--CchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhc
Confidence 456666666543333323 566777778899888854 7888888899999999999888 788999999999999999
Q ss_pred CCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEec
Q 045270 105 FNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLL 184 (440)
Q Consensus 105 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 184 (440)
.|+++-.+.. ++.+ -|+.|.+++|+++ .+|..++.. ..|..|+.+.|.+. .+|..++++.+|+.|.+
T Consensus 130 ~NqlS~lp~~--lC~l-pLkvli~sNNkl~-~lp~~ig~~--------~tl~~ld~s~nei~-slpsql~~l~slr~l~v 196 (722)
T KOG0532|consen 130 SNQLSHLPDG--LCDL-PLKVLIVSNNKLT-SLPEEIGLL--------PTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNV 196 (722)
T ss_pred cchhhcCChh--hhcC-cceeEEEecCccc-cCCcccccc--------hhHHHhhhhhhhhh-hchHHhhhHHHHHHHHH
Confidence 9998733333 3333 5788889999987 888888744 68888999999887 78888889999999999
Q ss_pred cccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCC----CcccCcccEEeccCc
Q 045270 185 SSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN----LKNQSQLQYLYLSEN 259 (440)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~----~~~~~~L~~L~l~~~ 259 (440)
..|++. ..+.. +. .-.|..|+++.|++...+.. |..+..|+.|.|.+|.++.-|. .+...-.+.|+...|
T Consensus 197 rRn~l~-~lp~E-l~-~LpLi~lDfScNkis~iPv~--fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 197 RRNHLE-DLPEE-LC-SLPLIRLDFSCNKISYLPVD--FRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred hhhhhh-hCCHH-Hh-CCceeeeecccCceeecchh--hhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhc
Confidence 998886 55543 34 45688899999988755543 7788899999999998887776 333344556666555
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.08 E-value=3.9e-11 Score=101.16 Aligned_cols=108 Identities=21% Similarity=0.202 Sum_probs=69.4
Q ss_pred CCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchhhhccccEEEC
Q 045270 317 PNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDL 396 (440)
Q Consensus 317 ~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~L~~L~l 396 (440)
.+.++.|+++.|.+. .+.. ...+++|+.|++++|.++. ...+=..+-+++.|.++.|.|.+.......-+|..||+
T Consensus 306 ~Pkir~L~lS~N~i~-~v~n--La~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N~iE~LSGL~KLYSLvnLDl 381 (490)
T KOG1259|consen 306 APKLRRLILSQNRIR-TVQN--LAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQNKIETLSGLRKLYSLVNLDL 381 (490)
T ss_pred ccceeEEecccccee-eehh--hhhcccceEeecccchhHh-hhhhHhhhcCEeeeehhhhhHhhhhhhHhhhhheeccc
Confidence 455666666666654 3322 2226777777777776662 33344456677777777777766655555566777777
Q ss_pred CCCcccCCc-hhhhhcCCCCcEEECCCCccccc
Q 045270 397 NGNRLQGTV-PKSIANCKMLEVLNLGNNQFSDK 428 (440)
Q Consensus 397 ~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~ 428 (440)
++|++.... ...++++|.|+.+.+.+|++...
T Consensus 382 ~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 382 SSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred cccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 777777432 34677888888888888887643
No 32
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.07 E-value=1.4e-10 Score=116.66 Aligned_cols=126 Identities=26% Similarity=0.287 Sum_probs=68.9
Q ss_pred ceEEEeeccceeecccCCCccccccCCCCeEEecCCc--cCCCccccchhcCCCCcEEEcccCccccCCcccccccccCc
Q 045270 22 HVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTS--FNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLV 99 (440)
Q Consensus 22 ~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 99 (440)
.+|+..+-++.+.. .+ .-..++.|+.|-+..+. +... .++.|..++.|++||+++|.-.+.+|..++.+.+||
T Consensus 524 ~~rr~s~~~~~~~~-~~---~~~~~~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 524 SVRRMSLMNNKIEH-IA---GSSENPKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred heeEEEEeccchhh-cc---CCCCCCccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence 45556555555432 11 22344466666666654 2222 233455677777777776655556777777777777
Q ss_pred eecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCC
Q 045270 100 ALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSG 162 (440)
Q Consensus 100 ~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~ 162 (440)
+|+++++.+. .+|. .+.++..|.+|++..+.....+|.....+ ++|++|.+..
T Consensus 599 yL~L~~t~I~-~LP~-~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L--------~~Lr~L~l~~ 651 (889)
T KOG4658|consen 599 YLDLSDTGIS-HLPS-GLGNLKKLIYLNLEVTGRLESIPGILLEL--------QSLRVLRLPR 651 (889)
T ss_pred cccccCCCcc-ccch-HHHHHHhhheeccccccccccccchhhhc--------ccccEEEeec
Confidence 7777777666 3333 35666666666666554433333333223 4555555543
No 33
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.06 E-value=9.6e-12 Score=113.54 Aligned_cols=174 Identities=29% Similarity=0.409 Sum_probs=126.6
Q ss_pred ceeecCCCCCCCCCC-CcccCcccEEeccCcccccccCcccccccccceeEEEccCcccccccCCccCCceeEEEcCCcc
Q 045270 230 ELLNLASCKLREIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQ 308 (440)
Q Consensus 230 ~~L~l~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 308 (440)
...+++.|++..+|. +..+-.|+.+.+..|.+. .+|..+ ..+..|.+++++.|+
T Consensus 78 ~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i------------------------~~L~~lt~l~ls~Nq 132 (722)
T KOG0532|consen 78 VFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAI------------------------CNLEALTFLDLSSNQ 132 (722)
T ss_pred hhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhh------------------------hhhhHHHHhhhccch
Confidence 344555555555554 444455555555444442 333333 234555555666555
Q ss_pred ccCcccCCC-CCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchhh
Q 045270 309 LRGNIHQLP-NNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFL 387 (440)
Q Consensus 309 ~~~~~~~~~-~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~ 387 (440)
+.......+ --|+.|.+++|+++ .+|..+. ..+.|..|+.+.|.+. ..|..++++.+|+.|.+..|++.+.|....
T Consensus 133 lS~lp~~lC~lpLkvli~sNNkl~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~ 209 (722)
T KOG0532|consen 133 LSHLPDGLCDLPLKVLIVSNNKLT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELC 209 (722)
T ss_pred hhcCChhhhcCcceeEEEecCccc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHh
Confidence 543333221 25889999999998 8898888 4899999999999998 578889999999999999999999988888
Q ss_pred hccccEEECCCCcccCCchhhhhcCCCCcEEECCCCcccccCcccc
Q 045270 388 NCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWL 433 (440)
Q Consensus 388 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l 433 (440)
.-.|.+||+++|++. .+|.+|.+|+.|+.|.|.+|++. ..|..|
T Consensus 210 ~LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqI 253 (722)
T KOG0532|consen 210 SLPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQI 253 (722)
T ss_pred CCceeeeecccCcee-ecchhhhhhhhheeeeeccCCCC-CChHHH
Confidence 666999999999999 78889999999999999999985 334433
No 34
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.05 E-value=5.5e-11 Score=100.30 Aligned_cols=106 Identities=29% Similarity=0.425 Sum_probs=77.8
Q ss_pred cCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeE
Q 045270 200 NLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHC 279 (440)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 279 (440)
.+..|+.+++++|.++.... .....|.++.|+++.|.+..+..+..+++|+.||+++|.++. ...|-.... ++++
T Consensus 282 TWq~LtelDLS~N~I~~iDE--SvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLG--NIKt 356 (490)
T KOG1259|consen 282 TWQELTELDLSGNLITQIDE--SVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAE-CVGWHLKLG--NIKT 356 (490)
T ss_pred hHhhhhhccccccchhhhhh--hhhhccceeEEeccccceeeehhhhhcccceEeecccchhHh-hhhhHhhhc--CEee
Confidence 44568888999988864433 356778899999999998888888888999999999887753 344433333 3888
Q ss_pred EEccCcccccccCCccCCceeEEEcCCcccc
Q 045270 280 LNLSHNLLVGFQGPYSIPALRFIDLSSHQLR 310 (440)
Q Consensus 280 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 310 (440)
|.++.|.+.++.+...+-+|..|++++|++.
T Consensus 357 L~La~N~iE~LSGL~KLYSLvnLDl~~N~Ie 387 (490)
T KOG1259|consen 357 LKLAQNKIETLSGLRKLYSLVNLDLSSNQIE 387 (490)
T ss_pred eehhhhhHhhhhhhHhhhhheeccccccchh
Confidence 8888888888777766666666666666554
No 35
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.96 E-value=7.9e-10 Score=104.04 Aligned_cols=191 Identities=30% Similarity=0.362 Sum_probs=93.7
Q ss_pred EEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccC--cccEEeccCcccccccCcccccccccceeEEEcc
Q 045270 206 KLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQS--QLQYLYLSENQISREIPNWIWRVSVVGLHCLNLS 283 (440)
Q Consensus 206 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 283 (440)
.+....+.+...... ....+.+..+.+.++.++.++...... +|+.|++++|.+.. .+..+. ..++|+.|+++
T Consensus 97 ~l~~~~~~~~~~~~~--~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~-l~~~~~--~l~~L~~L~l~ 171 (394)
T COG4886 97 SLDLNLNRLRSNISE--LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIES-LPSPLR--NLPNLKNLDLS 171 (394)
T ss_pred eeeccccccccCchh--hhcccceeEEecCCcccccCccccccchhhcccccccccchhh-hhhhhh--ccccccccccC
Confidence 455555554211111 223356777777777777777633332 67777777776642 222221 23346666666
Q ss_pred CcccccccCCc-cCCceeEEEcCCccccCcccC--CCCCccEEEccCCcccccCCccccccCCCcceEecccccccccch
Q 045270 284 HNLLVGFQGPY-SIPALRFIDLSSHQLRGNIHQ--LPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIP 360 (440)
Q Consensus 284 ~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~--~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 360 (440)
+|.+..++... ..+.++.+++++|++...... .+..|+++.+++|.+. ..+..... ++.+..+.+.+|++.. .+
T Consensus 172 ~N~l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~-~~~l~~l~l~~n~~~~-~~ 248 (394)
T COG4886 172 FNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLSSLSN-LKNLSGLELSNNKLED-LP 248 (394)
T ss_pred CchhhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcce-ecchhhhh-cccccccccCCceeee-cc
Confidence 66666655544 455555555555555444332 3334555555555322 22222222 4444444444444442 23
Q ss_pred hhhhccCCCCEEEcCCCcCCCCCchhhhccccEEECCCCcccCC
Q 045270 361 ASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGT 404 (440)
Q Consensus 361 ~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~L~~L~l~~n~~~~~ 404 (440)
..++.++++++|++++|.++.++......+++.|+++++.+...
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred chhccccccceeccccccccccccccccCccCEEeccCcccccc
Confidence 44444455555555555555444322233355555555544433
No 36
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.94 E-value=1.6e-09 Score=101.99 Aligned_cols=199 Identities=32% Similarity=0.413 Sum_probs=138.0
Q ss_pred eEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccc-cCceecCCCCcccCccchhhhcccccceEEEec
Q 045270 51 SLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMA-RLVALDFSFNQFSGSISSIRWEHLLNLVYAVLS 129 (440)
Q Consensus 51 ~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~ 129 (440)
.++...+.+.. ....+..++.++.|++.++.+. .++....... +|++|++++|.+. .++ ..++.+++|+.|+++
T Consensus 97 ~l~~~~~~~~~--~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~-~~~~~l~~L~~L~l~ 171 (394)
T COG4886 97 SLDLNLNRLRS--NISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLP-SPLRNLPNLKNLDLS 171 (394)
T ss_pred eeecccccccc--CchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhh-hhhhccccccccccC
Confidence 35555555422 2234455577888888888887 6666667774 8888888888877 332 236788888888888
Q ss_pred CCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEc
Q 045270 130 DNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDL 209 (440)
Q Consensus 130 ~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l 209 (440)
+|++. .+|...+.. +.|+.|++++|.+. .+|........|+++.+.+|... . ....+..+..+..+.+
T Consensus 172 ~N~l~-~l~~~~~~~--------~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~-~~~~~~~~~~l~~l~l 239 (394)
T COG4886 172 FNDLS-DLPKLLSNL--------SNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-E-LLSSLSNLKNLSGLEL 239 (394)
T ss_pred Cchhh-hhhhhhhhh--------hhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-e-cchhhhhccccccccc
Confidence 88887 555544332 67888888888887 66665555666888888888532 1 2234567777777777
Q ss_pred CCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEeccCcccccccCcc
Q 045270 210 SYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNW 268 (440)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~ 268 (440)
.++++... ......++.++.|++++|.++.++.+....+++.++++++.+....+..
T Consensus 240 ~~n~~~~~--~~~~~~l~~l~~L~~s~n~i~~i~~~~~~~~l~~L~~s~n~~~~~~~~~ 296 (394)
T COG4886 240 SNNKLEDL--PESIGNLSNLETLDLSNNQISSISSLGSLTNLRELDLSGNSLSNALPLI 296 (394)
T ss_pred CCceeeec--cchhccccccceeccccccccccccccccCccCEEeccCccccccchhh
Confidence 77776542 2235667778888888888888887888888888888888776554443
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.91 E-value=1.2e-09 Score=110.18 Aligned_cols=230 Identities=21% Similarity=0.259 Sum_probs=141.0
Q ss_pred CceEEEeeccce--eecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccC
Q 045270 21 GHVIGLDLSTES--ISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARL 98 (440)
Q Consensus 21 ~~l~~L~l~~~~--~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L 98 (440)
+.+++|-+..+. +...... .|..++.|++||+++|.-... +|+.++.+-+||+|+++++.+. .+|..+.++..|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~--ff~~m~~LrVLDLs~~~~l~~-LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L 620 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGE--FFRSLPLLRVLDLSGNSSLSK-LPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKL 620 (889)
T ss_pred CccceEEEeecchhhhhcCHH--HHhhCcceEEEECCCCCccCc-CChHHhhhhhhhcccccCCCcc-ccchHHHHHHhh
Confidence 468888888885 3332222 488899999999998766555 9999999999999999999998 999999999999
Q ss_pred ceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccC
Q 045270 99 VALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKK 178 (440)
Q Consensus 99 ~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 178 (440)
.+|++..+.....+ ......+++|++|.+...... .....+..+ ..+.+|+.+....... .+...+..++.
T Consensus 621 ~~Lnl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~-~~~~~l~el-----~~Le~L~~ls~~~~s~--~~~e~l~~~~~ 691 (889)
T KOG4658|consen 621 IYLNLEVTGRLESI-PGILLELQSLRVLRLPRSALS-NDKLLLKEL-----ENLEHLENLSITISSV--LLLEDLLGMTR 691 (889)
T ss_pred heeccccccccccc-cchhhhcccccEEEeeccccc-cchhhHHhh-----hcccchhhheeecchh--HhHhhhhhhHH
Confidence 99999998876455 446777999999998765421 111112222 2224455544433221 11122233333
Q ss_pred cc----EEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCcc----ccC-CccccceeecCCCCCCC-CCCCccc
Q 045270 179 LT----SLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSR----NYS-FSPMLELLNLASCKLRE-IPNLKNQ 248 (440)
Q Consensus 179 L~----~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~-~~~~L~~L~l~~~~l~~-l~~~~~~ 248 (440)
|. .+.+.++.. ......+..+.+|+.|.+.++.+....... ... .++++..+.+.++..-. +.+.-..
T Consensus 692 L~~~~~~l~~~~~~~--~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~ 769 (889)
T KOG4658|consen 692 LRSLLQSLSIEGCSK--RTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFA 769 (889)
T ss_pred HHHHhHhhhhccccc--ceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhcc
Confidence 33 222222222 122234567778888888887764322111 011 13345555555553332 2223456
Q ss_pred CcccEEeccCccccccc
Q 045270 249 SQLQYLYLSENQISREI 265 (440)
Q Consensus 249 ~~L~~L~l~~~~~~~~~ 265 (440)
++|+.+++..+....++
T Consensus 770 ~~L~~l~l~~~~~~e~~ 786 (889)
T KOG4658|consen 770 PHLTSLSLVSCRLLEDI 786 (889)
T ss_pred CcccEEEEecccccccC
Confidence 77888888777654433
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.85 E-value=7e-09 Score=102.29 Aligned_cols=106 Identities=32% Similarity=0.481 Sum_probs=65.6
Q ss_pred CcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcc
Q 045270 74 LTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSS 153 (440)
Q Consensus 74 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~ 153 (440)
++.|+|+++.+.+.+|..+..+++|++|+|++|.+.+.++. .+..+++|+.|++++|.+.+.+|..++.+ +
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~-~~~~l~~L~~LdLs~N~lsg~iP~~l~~L--------~ 490 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP-SLGSITSLEVLDLSYNSFNGSIPESLGQL--------T 490 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCCh-HHhCCCCCCEEECCCCCCCCCCchHHhcC--------C
Confidence 55666666666666666666666666666666666655554 35666666666666666666666666544 4
Q ss_pred cccEEEcCCCccCCccccccccc-cCccEEeccccc
Q 045270 154 ALDTLDLSGNRLRGSIPVSVFEL-KKLTSLLLSSNN 188 (440)
Q Consensus 154 ~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~ 188 (440)
+|++|++++|.+.+.+|..+... .++..+++.+|.
T Consensus 491 ~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 491 SLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCCEEECcCCcccccCChHHhhccccCceEEecCCc
Confidence 66666666666666666555442 344555555554
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.81 E-value=3.8e-09 Score=69.87 Aligned_cols=61 Identities=43% Similarity=0.596 Sum_probs=51.5
Q ss_pred CCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcC
Q 045270 318 NNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSF 379 (440)
Q Consensus 318 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i 379 (440)
++|++|++++|.+. .++...+..+++|++|++++|.+....+..|.++++|++|++++|+|
T Consensus 1 p~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 36788888888887 77777777789999999999999888888899999999999988864
No 40
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=9.4e-11 Score=98.78 Aligned_cols=210 Identities=21% Similarity=0.181 Sum_probs=133.1
Q ss_pred CceEEEeeccceeecccCCCcccccc-CCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCc
Q 045270 21 GHVIGLDLSTESISGGIENAASLFSL-HYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLV 99 (440)
Q Consensus 21 ~~l~~L~l~~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 99 (440)
+.|.++.+-...+.+... +.-+.-+ +.|+++|++...++...+.-.++.+.+|+.|.+.++++.+.+...+++..+|+
T Consensus 159 rgV~v~Rlar~~~~~prl-ae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~ 237 (419)
T KOG2120|consen 159 RGVIVFRLARSFMDQPRL-AEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLV 237 (419)
T ss_pred CCeEEEEcchhhhcCchh-hhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccce
Confidence 356666666443332111 1123333 36888888887776554555567788888888888888877777888888889
Q ss_pred eecCCCCc-ccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCC---cccccccc
Q 045270 100 ALDFSFNQ-FSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRG---SIPVSVFE 175 (440)
Q Consensus 100 ~L~L~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~---~~~~~~~~ 175 (440)
.|+|+.+. ++.......+..++.|..|++++|.........+.. ..-.+|+.|+++++.-.- .+......
T Consensus 238 ~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~------hise~l~~LNlsG~rrnl~~sh~~tL~~r 311 (419)
T KOG2120|consen 238 RLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVA------HISETLTQLNLSGYRRNLQKSHLSTLVRR 311 (419)
T ss_pred eeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHh------hhchhhhhhhhhhhHhhhhhhHHHHHHHh
Confidence 99888774 332223345778888888998888764332211111 122578888888875331 11122345
Q ss_pred ccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCC
Q 045270 176 LKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASC 237 (440)
Q Consensus 176 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 237 (440)
+++|..|+++++.....--...+-.++.|++|.++.|..-.......+...|.|.+|++.++
T Consensus 312 cp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 312 CPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred CCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 78888899888754323333456678888888888875321111122667888999998877
No 41
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.75 E-value=3.8e-09 Score=89.24 Aligned_cols=214 Identities=21% Similarity=0.196 Sum_probs=130.0
Q ss_pred cccccCCCCeEEecCCccCCCccccchh-cCCCCcEEEcccCcccc--CCcccccccccCceecCCCCcccCccchhhhc
Q 045270 42 SLFSLHYLRSLNLARTSFNGTQIPSKLA-NISSLTYLNLSDAGFAG--HIPLQISSMARLVALDFSFNQFSGSISSIRWE 118 (440)
Q Consensus 42 ~~~~l~~L~~L~l~~~~~~~~~l~~~~~-~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~ 118 (440)
.++....++.+.+-++.+........|+ ..++++.+||.+|.+.. .+..-+.++|+|+.|+|+.|.+...+.... .
T Consensus 40 ~v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~ 118 (418)
T KOG2982|consen 40 GVSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-L 118 (418)
T ss_pred eeccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc-c
Confidence 3444555666677677665543334443 46788888888887752 344445678888888888888775554322 4
Q ss_pred ccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCC--cccccccc-ccCccEEeccccccccccch
Q 045270 119 HLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRG--SIPVSVFE-LKKLTSLLLSSNNLHGTVQL 195 (440)
Q Consensus 119 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~--~~~~~~~~-~~~L~~L~l~~~~~~~~~~~ 195 (440)
...+|+.|.|.+..+......++. ..++.+++|.++.|.+.. ........ -+.+++|.+..|...-....
T Consensus 119 p~~nl~~lVLNgT~L~w~~~~s~l-------~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~ 191 (418)
T KOG2982|consen 119 PLKNLRVLVLNGTGLSWTQSTSSL-------DDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNK 191 (418)
T ss_pred cccceEEEEEcCCCCChhhhhhhh-------hcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHH
Confidence 556788888877766433322221 233566777777664331 11111112 23566666666644322221
Q ss_pred hh-HhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCC---CcccCcccEEeccCccccc
Q 045270 196 DK-ILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN---LKNQSQLQYLYLSENQISR 263 (440)
Q Consensus 196 ~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~---~~~~~~L~~L~l~~~~~~~ 263 (440)
.. .+-++++..+.+..+.+........+...|.+.-|+++.+++..+.+ +.+++.|..|.++.+.+.+
T Consensus 192 ~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 192 NKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred HhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 11 23467778888888877766666656677777788888887775544 7777888888888777654
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.74 E-value=7.8e-09 Score=68.37 Aligned_cols=39 Identities=31% Similarity=0.430 Sum_probs=15.4
Q ss_pred hhcCCCCcEEEcccCccccCCcccccccccCceecCCCC
Q 045270 68 LANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFN 106 (440)
Q Consensus 68 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~ 106 (440)
|.++++|++|++++|.+....+.+|..+++|++|++++|
T Consensus 21 f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 21 FSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred HcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 333444444444444443333333344444444444433
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.73 E-value=1.3e-09 Score=102.74 Aligned_cols=244 Identities=25% Similarity=0.288 Sum_probs=137.6
Q ss_pred ccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCcccccee
Q 045270 153 SALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELL 232 (440)
Q Consensus 153 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 232 (440)
..++.+.+..+.+. ..-..+..+.++..|++.+|.+. .+.. .+..+++|+.|++++|.|+.... +..++.|+.|
T Consensus 72 ~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~-~i~~-~l~~~~~L~~L~ls~N~I~~i~~---l~~l~~L~~L 145 (414)
T KOG0531|consen 72 TSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIE-KIEN-LLSSLVNLQVLDLSFNKITKLEG---LSTLTLLKEL 145 (414)
T ss_pred HhHHhhccchhhhh-hhhcccccccceeeeeccccchh-hccc-chhhhhcchheeccccccccccc---hhhccchhhh
Confidence 45666666666655 22333556677777777777775 2221 15567777777777777765443 3345557777
Q ss_pred ecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEEccCcccccccCCccCCceeEEEcCCccccCc
Q 045270 233 NLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGN 312 (440)
Q Consensus 233 ~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 312 (440)
++.+|.++.++.+..++.|+.+++++|.+...-+. . .....+++.+.+.+|.+........+.
T Consensus 146 ~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~-~-~~~~~~l~~l~l~~n~i~~i~~~~~~~--------------- 208 (414)
T KOG0531|consen 146 NLSGNLISDISGLESLKSLKLLDLSYNRIVDIEND-E-LSELISLEELDLGGNSIREIEGLDLLK--------------- 208 (414)
T ss_pred eeccCcchhccCCccchhhhcccCCcchhhhhhhh-h-hhhccchHHHhccCCchhcccchHHHH---------------
Confidence 77777777777766677777777777766532221 0 012223555555555554443332222
Q ss_pred ccCCCCCccEEEccCCcccccCCccccccCC--CcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchhhhcc
Q 045270 313 IHQLPNNLIYIDFSNNNFTSSIPADTGNFMP--RLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCL 390 (440)
Q Consensus 313 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~--~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~ 390 (440)
.+..+++..|.+. .+..... .+ .|+.+++.+|.+.. .+..+..++.+..|++.+|.+...........
T Consensus 209 ------~l~~~~l~~n~i~-~~~~l~~--~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~~~~~~~~~ 278 (414)
T KOG0531|consen 209 ------KLVLLSLLDNKIS-KLEGLNE--LVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNLEGLERLPK 278 (414)
T ss_pred ------HHHHhhcccccce-eccCccc--chhHHHHHHhcccCcccc-ccccccccccccccchhhccccccccccccch
Confidence 3333345555444 1111110 22 26667777776662 33455666677777777777766655555555
Q ss_pred ccEEECCCCcccCC---chhh-hhcCCCCcEEECCCCcccccC
Q 045270 391 LQTLDLNGNRLQGT---VPKS-IANCKMLEVLNLGNNQFSDKF 429 (440)
Q Consensus 391 L~~L~l~~n~~~~~---~~~~-~~~l~~L~~L~l~~n~~~~~~ 429 (440)
+..+...++.+... .... ....+.++.+.+.+|+.....
T Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (414)
T KOG0531|consen 279 LSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKIS 321 (414)
T ss_pred HHHhccCcchhcchhhhhccccccccccccccccccCcccccc
Confidence 66666666665522 1111 445667777777777665543
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.68 E-value=1.1e-09 Score=92.56 Aligned_cols=228 Identities=22% Similarity=0.152 Sum_probs=140.7
Q ss_pred CceEEEeeccceeecccCCCcccccc--CCCCeEEecCCccCCCccccchhc-CCCCcEEEcccCcccc-CCcccccccc
Q 045270 21 GHVIGLDLSTESISGGIENAASLFSL--HYLRSLNLARTSFNGTQIPSKLAN-ISSLTYLNLSDAGFAG-HIPLQISSMA 96 (440)
Q Consensus 21 ~~l~~L~l~~~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~l~~~~~~-l~~L~~L~l~~~~~~~-~~~~~~~~l~ 96 (440)
+.=+.+|+.+-.+. |. ....+ +....+.+.........+.+.+.- -..|++|||+...++. .+-..++.|.
T Consensus 136 ~lW~~lDl~~r~i~---p~--~l~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~ 210 (419)
T KOG2120|consen 136 SLWQTLDLTGRNIH---PD--VLGRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCS 210 (419)
T ss_pred cceeeeccCCCccC---hh--HHHHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHH
Confidence 33456777665543 22 33333 233444443322222212333322 2469999999988762 3334467889
Q ss_pred cCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCcccccc-cc
Q 045270 97 RLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSV-FE 175 (440)
Q Consensus 97 ~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~-~~ 175 (440)
+|+.|.|+++++.+.+. ..+.+..+|+.++++.|......... +-...|+.|..|+++-|.+.......+ .+
T Consensus 211 kLk~lSlEg~~LdD~I~-~~iAkN~~L~~lnlsm~sG~t~n~~~------ll~~scs~L~~LNlsWc~l~~~~Vtv~V~h 283 (419)
T KOG2120|consen 211 KLKNLSLEGLRLDDPIV-NTIAKNSNLVRLNLSMCSGFTENALQ------LLLSSCSRLDELNLSWCFLFTEKVTVAVAH 283 (419)
T ss_pred hhhhccccccccCcHHH-HHHhccccceeeccccccccchhHHH------HHHHhhhhHhhcCchHhhccchhhhHHHhh
Confidence 99999999999885443 36888899999999988643222111 111677899999999887653222111 11
Q ss_pred -ccCccEEecccccccccc-c-hhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCC---CCCCCcccC
Q 045270 176 -LKKLTSLLLSSNNLHGTV-Q-LDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR---EIPNLKNQS 249 (440)
Q Consensus 176 -~~~L~~L~l~~~~~~~~~-~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~---~l~~~~~~~ 249 (440)
-++|..|+++++.-.-.. . ....+.+++|..|+++.+..-.......+..++.|++|.++.|..- .+-.+...|
T Consensus 284 ise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~p 363 (419)
T KOG2120|consen 284 ISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKP 363 (419)
T ss_pred hchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCc
Confidence 367888999887432111 1 1224678999999999886433333333667888999999999542 222378889
Q ss_pred cccEEeccCcc
Q 045270 250 QLQYLYLSENQ 260 (440)
Q Consensus 250 ~L~~L~l~~~~ 260 (440)
.|.+|++-|+-
T Consensus 364 sl~yLdv~g~v 374 (419)
T KOG2120|consen 364 SLVYLDVFGCV 374 (419)
T ss_pred ceEEEEecccc
Confidence 99999998763
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.55 E-value=1.5e-08 Score=85.82 Aligned_cols=225 Identities=19% Similarity=0.101 Sum_probs=145.4
Q ss_pred EEeeccceeecccCCCccccccCCCCeEEecCCccCCCc-cccchhcCCCCcEEEcccCccccCCcccc-cccccCceec
Q 045270 25 GLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQ-IPSKLANISSLTYLNLSDAGFAGHIPLQI-SSMARLVALD 102 (440)
Q Consensus 25 ~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-l~~~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~ 102 (440)
.+.+.++.+.........-..+++++.+|+.+|.+..-+ +...+..+|.|++|+++.|.+...+. .+ ....+|++|-
T Consensus 49 llvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~-~lp~p~~nl~~lV 127 (418)
T KOG2982|consen 49 LLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIK-SLPLPLKNLRVLV 127 (418)
T ss_pred hheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccc-cCcccccceEEEE
Confidence 444445544322221113346789999999999986422 44445689999999999998763322 22 3456899999
Q ss_pred CCCCcccCccchhhhcccccceEEEecCCccCC--CCCccccccccccccCcccccEEEcCCCccCC--ccccccccccC
Q 045270 103 FSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNG--SIPRSMFEFPIFSNASSSALDTLDLSGNRLRG--SIPVSVFELKK 178 (440)
Q Consensus 103 L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~ 178 (440)
|.++.+.-.-....+..+|.+++|.++.|.+.- .-...+.. ..+.++++....|.... .....-.-+++
T Consensus 128 LNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~-------~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpn 200 (418)
T KOG2982|consen 128 LNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIED-------WSTEVLTLHQLPCLEQLWLNKNKLSRIFPN 200 (418)
T ss_pred EcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccc-------cchhhhhhhcCCcHHHHHHHHHhHHhhccc
Confidence 988877644455567889999999999884321 11111111 12466677776664320 11111223688
Q ss_pred ccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCC-CCCC-------CcccCc
Q 045270 179 LTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR-EIPN-------LKNQSQ 250 (440)
Q Consensus 179 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~l~~-------~~~~~~ 250 (440)
+..+.+..|.+........+..++.+..|+++.+++.+......+..++.|..|.+.++.+. .+.. +..+++
T Consensus 201 v~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~ 280 (418)
T KOG2982|consen 201 VNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTK 280 (418)
T ss_pred chheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccc
Confidence 88888888877644444445667778889999998877666555788899999999888764 2221 667788
Q ss_pred ccEEecc
Q 045270 251 LQYLYLS 257 (440)
Q Consensus 251 L~~L~l~ 257 (440)
++.|+-+
T Consensus 281 v~vLNGs 287 (418)
T KOG2982|consen 281 VQVLNGS 287 (418)
T ss_pred eEEecCc
Confidence 8887755
No 46
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.55 E-value=2.8e-09 Score=94.18 Aligned_cols=234 Identities=18% Similarity=0.058 Sum_probs=115.6
Q ss_pred CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccch-hcCCCCcEEEcccCc-cccCCcc-ccccccc
Q 045270 21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKL-ANISSLTYLNLSDAG-FAGHIPL-QISSMAR 97 (440)
Q Consensus 21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~-~~l~~L~~L~l~~~~-~~~~~~~-~~~~l~~ 97 (440)
+.++.|.+.++.-.+..+--..-.+++++++|++.+|..........+ ..+++|++|++..|. ++...-. -...+++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 456777777766544333222355777777777777764322122223 457777777777743 3322111 1245677
Q ss_pred CceecCCCCcc-cCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCcc--ccccc
Q 045270 98 LVALDFSFNQF-SGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSI--PVSVF 174 (440)
Q Consensus 98 L~~L~L~~~~~-~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~--~~~~~ 174 (440)
|++|++++|.- ++.........+..++.+.+++|.-. ..+.+..+. ..+..+..+++..|...... ...-.
T Consensus 218 L~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~--~le~l~~~~----~~~~~i~~lnl~~c~~lTD~~~~~i~~ 291 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLEL--ELEALLKAA----AYCLEILKLNLQHCNQLTDEDLWLIAC 291 (483)
T ss_pred HHHhhhccCchhhcCcchHHhccchhhhhhhhcccccc--cHHHHHHHh----ccChHhhccchhhhccccchHHHHHhh
Confidence 77777777742 22111123444555555555554321 111111111 33344555555554322111 01112
Q ss_pred cccCccEEeccccccccccchhhH-hcCCCCcEEEcCCCc-ccccCCccccCCccccceeecCCCCCC---CCCC-Cccc
Q 045270 175 ELKKLTSLLLSSNNLHGTVQLDKI-LNLGNLAKLDLSYNS-LAVDESSRNYSFSPMLELLNLASCKLR---EIPN-LKNQ 248 (440)
Q Consensus 175 ~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~l~---~l~~-~~~~ 248 (440)
.+..|+.+..+++...+......+ .++.+|+.+.+..++ ++.......-.+++.|+.+++.++... .+.. -.++
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 356677777666654323333333 355677777777765 222222222345566777776666432 1222 4456
Q ss_pred CcccEEeccCcc
Q 045270 249 SQLQYLYLSENQ 260 (440)
Q Consensus 249 ~~L~~L~l~~~~ 260 (440)
+.|+++.++.|.
T Consensus 372 ~~lr~lslshce 383 (483)
T KOG4341|consen 372 PRLRVLSLSHCE 383 (483)
T ss_pred chhccCChhhhh
Confidence 667777776554
No 47
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.51 E-value=6e-09 Score=92.15 Aligned_cols=33 Identities=24% Similarity=0.394 Sum_probs=14.8
Q ss_pred ccEEECCCCcccC-CchhhhhcCCCCcEEECCCC
Q 045270 391 LQTLDLNGNRLQG-TVPKSIANCKMLEVLNLGNN 423 (440)
Q Consensus 391 L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n 423 (440)
|+.+-+++++.+. ...+.+..+++|+.+++-+|
T Consensus 403 l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~ 436 (483)
T KOG4341|consen 403 LEVLELDNCPLITDATLEHLSICRNLERIELIDC 436 (483)
T ss_pred cceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence 4444444444332 22233444555555555544
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.48 E-value=1.4e-08 Score=95.68 Aligned_cols=213 Identities=27% Similarity=0.271 Sum_probs=122.4
Q ss_pred cCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCC-CcccCcccEEeccCcccccccCccccccccccee
Q 045270 200 NLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLH 278 (440)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 278 (440)
.+..++.+.+..|.+... ...+..+.+++.+++.+|.++.+.. +..+++|+.|++++|.|+...+-. ....|+
T Consensus 70 ~l~~l~~l~l~~n~i~~~--~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~----~l~~L~ 143 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAKI--LNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLS----TLTLLK 143 (414)
T ss_pred HhHhHHhhccchhhhhhh--hcccccccceeeeeccccchhhcccchhhhhcchheeccccccccccchh----hccchh
Confidence 445566666777766541 1125567788888888888888887 778888888888888876433322 122277
Q ss_pred EEEccCcccccccCCccCCceeEEEcCCccccCccc---CCCCCccEEEccCCcccccCCccccccCCCcceEecccccc
Q 045270 279 CLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIH---QLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGL 355 (440)
Q Consensus 279 ~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 355 (440)
.|++++|.+..+.....++.++.+++++|++...-. ..+.+++.+.+.+|.+. .+... .....+..+++..|.+
T Consensus 144 ~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~-~i~~~--~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 144 ELNLSGNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR-EIEGL--DLLKKLVLLSLLDNKI 220 (414)
T ss_pred hheeccCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh-cccch--HHHHHHHHhhcccccc
Confidence 777888877777776667777777777776665444 44556666666666654 22111 1122333445555555
Q ss_pred cccchhhhhccCC--CCEEEcCCCcCCCC-CchhhhccccEEECCCCcccCCchhhhhcCCCCcEEECCCCcc
Q 045270 356 TGIIPASLCNATT--LSLLDLSNNSFMKK-SDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQF 425 (440)
Q Consensus 356 ~~~~~~~~~~~~~--L~~L~l~~n~i~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 425 (440)
+...+ +..... |+.+.+++|.+... ........++.|++..|.+.... .+...+.+..+....+.+
T Consensus 221 ~~~~~--l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~~--~~~~~~~~~~~~~~~~~~ 289 (414)
T KOG0531|consen 221 SKLEG--LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNLE--GLERLPKLSELWLNDNKL 289 (414)
T ss_pred eeccC--cccchhHHHHHHhcccCccccccccccccccccccchhhccccccc--cccccchHHHhccCcchh
Confidence 43211 112222 56666666666655 23333444666666666555321 133334444555555544
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.36 E-value=6.4e-09 Score=98.21 Aligned_cols=123 Identities=27% Similarity=0.223 Sum_probs=68.1
Q ss_pred eeEEEccCcccccccCC-ccCCceeEEEcCCccccCcc-cCCCCCccEEEccCCcccccCCccccccCCCcceEeccccc
Q 045270 277 LHCLNLSHNLLVGFQGP-YSIPALRFIDLSSHQLRGNI-HQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNG 354 (440)
Q Consensus 277 L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 354 (440)
|...+.++|.+..+... .-++.++.|+++.|++.... ...++.|++|||+.|.+. .+|......+ +|..|.+.+|.
T Consensus 166 L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~ 243 (1096)
T KOG1859|consen 166 LATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNA 243 (1096)
T ss_pred HhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhc-cccccchhhh-hheeeeecccH
Confidence 55556666665544332 23566666677666655422 223556666666666665 5554332212 36666666666
Q ss_pred ccccchhhhhccCCCCEEEcCCCcCCCC---CchhhhccccEEECCCCcccC
Q 045270 355 LTGIIPASLCNATTLSLLDLSNNSFMKK---SDAFLNCLLQTLDLNGNRLQG 403 (440)
Q Consensus 355 l~~~~~~~~~~~~~L~~L~l~~n~i~~~---~~~~~~~~L~~L~l~~n~~~~ 403 (440)
++. ...+.++.+|+.||++.|-+.+. ...+....|+.|+|.||++-.
T Consensus 244 l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c 293 (1096)
T KOG1859|consen 244 LTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCC 293 (1096)
T ss_pred HHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcccc
Confidence 653 23456666666666666665544 222223446666666666653
No 50
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.35 E-value=4.5e-08 Score=81.85 Aligned_cols=197 Identities=19% Similarity=0.114 Sum_probs=92.9
Q ss_pred cccccCceecCCCCcccCccch---hhhcccccceEEEecCCccCCCCCcccc----ccccccc-cCcccccEEEcCCCc
Q 045270 93 SSMARLVALDFSFNQFSGSISS---IRWEHLLNLVYAVLSDNSLNGSIPRSMF----EFPIFSN-ASSSALDTLDLSGNR 164 (440)
Q Consensus 93 ~~l~~L~~L~L~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~----~l~~l~~-~~~~~L~~L~l~~~~ 164 (440)
.+||+|+..+|++|.+....+. ..+.+.+.|++|.+++|.+.......++ .+..... +.-+.|+++....|+
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 4455555555555555433322 2344555666666666554432222222 1100000 223567777776666
Q ss_pred cCCcccc-----ccccccCccEEeccccccccc----cchhhHhcCCCCcEEEcCCCcccccCCcc---ccCCcccccee
Q 045270 165 LRGSIPV-----SVFELKKLTSLLLSSNNLHGT----VQLDKILNLGNLAKLDLSYNSLAVDESSR---NYSFSPMLELL 232 (440)
Q Consensus 165 ~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~~~~~~L~~L 232 (440)
+. ..+. .+..-..|+.+.++.|.+... .....+..+.+|+.|+++.|.++...... .+...+.|+.|
T Consensus 169 le-ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 169 LE-NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hc-cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 54 1111 111224666777776665411 11122345567777777777665332211 13334456777
Q ss_pred ecCCCCCCCCCC--------CcccCcccEEeccCcccccccCc-----ccccccccceeEEEccCcccccc
Q 045270 233 NLASCKLREIPN--------LKNQSQLQYLYLSENQISREIPN-----WIWRVSVVGLHCLNLSHNLLVGF 290 (440)
Q Consensus 233 ~l~~~~l~~l~~--------~~~~~~L~~L~l~~~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~ 290 (440)
.+.+|-++.-.. -...|+|..|...+|.+.+.... .+..-..|-|..+.+.+|.+...
T Consensus 248 ~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~ 318 (388)
T COG5238 248 RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKEL 318 (388)
T ss_pred cccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhH
Confidence 777775542111 12346667777766654332111 11222334455556666666544
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.33 E-value=1.5e-08 Score=95.88 Aligned_cols=204 Identities=26% Similarity=0.188 Sum_probs=127.8
Q ss_pred CCCCcEEEcccCccccC-CcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCc--cCC---CCCcccccc
Q 045270 71 ISSLTYLNLSDAGFAGH-IPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNS--LNG---SIPRSMFEF 144 (440)
Q Consensus 71 l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--~~~---~~~~~~~~l 144 (440)
+++++.|.+-.-.-.+- .|..|..+..||+|.+.+|.+.. ... ...--.+|++|...+.- +.. .....+.+-
T Consensus 83 lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~-~~G-L~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns 160 (1096)
T KOG1859|consen 83 LQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST-AKG-LQELRHQLEKLICHNSLDALRHVFASCGGDISNS 160 (1096)
T ss_pred HhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh-hhh-hHHHHHhhhhhhhhccHHHHHHHHHHhccccccc
Confidence 44555555443322221 26677888899999999988763 211 11112355555433210 000 001111111
Q ss_pred ccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccC
Q 045270 145 PIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYS 224 (440)
Q Consensus 145 ~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 224 (440)
.....|.+.+.++|.+. .+...+.-++.++.|+++.|+++ .+. .+..+++|+.|++++|.+...+... -.
T Consensus 161 -----~~Wn~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~-~~ 230 (1096)
T KOG1859|consen 161 -----PVWNKLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD--NLRRLPKLKHLDLSYNCLRHVPQLS-MV 230 (1096)
T ss_pred -----hhhhhHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH--HHHhcccccccccccchhccccccc-hh
Confidence 01136777888888876 56667777889999999999986 333 6889999999999999887555443 22
Q ss_pred CccccceeecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEEccCcccc
Q 045270 225 FSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLV 288 (440)
Q Consensus 225 ~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 288 (440)
.+ .|..|.+++|.++.+..+.++.+|+.||+++|.+.+.-.-.+ ......|+.|.+.+|.+-
T Consensus 231 gc-~L~~L~lrnN~l~tL~gie~LksL~~LDlsyNll~~hseL~p-LwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 231 GC-KLQLLNLRNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEP-LWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hh-hheeeeecccHHHhhhhHHhhhhhhccchhHhhhhcchhhhH-HHHHHHHHHHhhcCCccc
Confidence 23 389999999999988888899999999999998765322111 112233777888887663
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.29 E-value=1.3e-07 Score=79.19 Aligned_cols=167 Identities=21% Similarity=0.169 Sum_probs=113.1
Q ss_pred hhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCcccc-------------ccccccCccEE
Q 045270 116 RWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPV-------------SVFELKKLTSL 182 (440)
Q Consensus 116 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~-------------~~~~~~~L~~L 182 (440)
++..+++|+.++|++|-+....|..++.+- +..+.|++|.+++|.+.-.-.. -...-|.|+.+
T Consensus 87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~i----s~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~v 162 (388)
T COG5238 87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLI----SSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVV 162 (388)
T ss_pred HHhcCCcceeeeccccccCcccchHHHHHH----hcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEE
Confidence 578899999999999999888888777665 5668999999999976521111 12245789999
Q ss_pred eccccccccc---cchhhHhcCCCCcEEEcCCCcccccCCcc----ccCCccccceeecCCCCCCCCCC------CcccC
Q 045270 183 LLSSNNLHGT---VQLDKILNLGNLAKLDLSYNSLAVDESSR----NYSFSPMLELLNLASCKLREIPN------LKNQS 249 (440)
Q Consensus 183 ~l~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~~L~~L~l~~~~l~~l~~------~~~~~ 249 (440)
....|++... .....+.....|+.+.+..|.|....... .+..+.+|+.|++.+|-++...+ +...+
T Consensus 163 icgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~ 242 (388)
T COG5238 163 ICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWN 242 (388)
T ss_pred EeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccc
Confidence 9888887521 12234455578899999999875432111 13456788999999987774433 66677
Q ss_pred cccEEeccCcccccccCcccc----cccccceeEEEccCcc
Q 045270 250 QLQYLYLSENQISREIPNWIW----RVSVVGLHCLNLSHNL 286 (440)
Q Consensus 250 ~L~~L~l~~~~~~~~~~~~~~----~~~~~~L~~L~l~~~~ 286 (440)
.|+.|.+.+|-++......+. ....|+|..|...+|.
T Consensus 243 ~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne 283 (388)
T COG5238 243 LLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNE 283 (388)
T ss_pred hhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhh
Confidence 788888888877655444432 2234455555555554
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.24 E-value=9.5e-06 Score=73.97 Aligned_cols=56 Identities=14% Similarity=0.191 Sum_probs=30.2
Q ss_pred HhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCC-CCCCCCCCcccCcccEEeccCc
Q 045270 198 ILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASC-KLREIPNLKNQSQLQYLYLSEN 259 (440)
Q Consensus 198 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~l~~~~~~~~L~~L~l~~~ 259 (440)
+..+.+++.|++++|.++..+ ...++|+.|.+.+| .++.+|.. -.++|+.|++++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP-----~LP~sLtsL~Lsnc~nLtsLP~~-LP~nLe~L~Ls~C 104 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLP-----VLPNELTEITIENCNNLTTLPGS-IPEGLEKLTVCHC 104 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccC-----CCCCCCcEEEccCCCCcccCCch-hhhhhhheEccCc
Confidence 334566777777776554433 12345666666664 34455431 1345666666655
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.16 E-value=4.3e-06 Score=67.17 Aligned_cols=104 Identities=28% Similarity=0.308 Sum_probs=81.5
Q ss_pred ccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCcccccee
Q 045270 153 SALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELL 232 (440)
Q Consensus 153 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 232 (440)
.+...+++++|.+.. ...|.+++.|.+|.+.+|+++ .+.+..-.-+++|+.|.+.+|.+........+..+|.|++|
T Consensus 42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 577888999888762 235778889999999999987 56555555667899999999988776666667788899999
Q ss_pred ecCCCCCCCCCC-----CcccCcccEEeccCc
Q 045270 233 NLASCKLREIPN-----LKNQSQLQYLYLSEN 259 (440)
Q Consensus 233 ~l~~~~l~~l~~-----~~~~~~L~~L~l~~~ 259 (440)
.+-+|.++.-+. +..+|+|+.||+.+-
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 999998876554 677889999998764
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.10 E-value=7.8e-07 Score=87.81 Aligned_cols=34 Identities=26% Similarity=0.278 Sum_probs=14.1
Q ss_pred ccccCceecCCCCcccCccchhhhcccccceEEEecC
Q 045270 94 SMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSD 130 (440)
Q Consensus 94 ~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~ 130 (440)
++|+|+.||++++.++ .+ ..++.+++|+.|.+.+
T Consensus 171 sFpNL~sLDIS~TnI~-nl--~GIS~LknLq~L~mrn 204 (699)
T KOG3665|consen 171 SFPNLRSLDISGTNIS-NL--SGISRLKNLQVLSMRN 204 (699)
T ss_pred ccCccceeecCCCCcc-Cc--HHHhccccHHHHhccC
Confidence 3444444444444443 22 1244444444444443
No 56
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.09 E-value=3.5e-07 Score=68.49 Aligned_cols=112 Identities=23% Similarity=0.251 Sum_probs=76.1
Q ss_pred CccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchhhh-ccccEEECC
Q 045270 319 NLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLN-CLLQTLDLN 397 (440)
Q Consensus 319 ~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~-~~L~~L~l~ 397 (440)
.|+..+|++|.+. ++|..+...+|.++.|++.+|.+. .+|+.+..++.|+.|++++|++...+..++. .++-.|+.-
T Consensus 54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~ 131 (177)
T KOG4579|consen 54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSP 131 (177)
T ss_pred eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCC
Confidence 5677788888877 777777666778888888888888 4666688888888888888888877766664 446667777
Q ss_pred CCcccCCchhhh-hcCCCCcEEECCCCcccccCccccc
Q 045270 398 GNRLQGTVPKSI-ANCKMLEVLNLGNNQFSDKFPCWLY 434 (440)
Q Consensus 398 ~n~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~~l~ 434 (440)
+|.......+.| ...+.|. ++.++++.+.-+..++
T Consensus 132 ~na~~eid~dl~~s~~~al~--~lgnepl~~~~~~klq 167 (177)
T KOG4579|consen 132 ENARAEIDVDLFYSSLPALI--KLGNEPLGDETKKKLQ 167 (177)
T ss_pred CCccccCcHHHhccccHHHH--HhcCCcccccCccccc
Confidence 777664333322 2233333 3466677666555443
No 57
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.04 E-value=1.9e-06 Score=85.14 Aligned_cols=140 Identities=21% Similarity=0.193 Sum_probs=96.8
Q ss_pred CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCce
Q 045270 21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVA 100 (440)
Q Consensus 21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 100 (440)
.++++||+++...-........-..||.|+.|.+.+-.+...+......++++|..||++++++.. + ..++++++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n-l-~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN-L-SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC-c-HHHhccccHHH
Confidence 578999998865432222222345789999999998887655344445678999999999999984 3 67899999999
Q ss_pred ecCCCCcccCccchhhhcccccceEEEecCCccCCCC--CccccccccccccCcccccEEEcCCCccC
Q 045270 101 LDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSI--PRSMFEFPIFSNASSSALDTLDLSGNRLR 166 (440)
Q Consensus 101 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~~~~l~~l~~~~~~~L~~L~l~~~~~~ 166 (440)
|.+.+=.+.....-..+-.+++|+.||++........ ....-++. ..++.|+.||.++..+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~----~~LpeLrfLDcSgTdi~ 263 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECG----MVLPELRFLDCSGTDIN 263 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhc----ccCccccEEecCCcchh
Confidence 9999888775444456788899999999887654211 11111111 23566777777766554
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.00 E-value=7.9e-06 Score=49.30 Aligned_cols=40 Identities=35% Similarity=0.449 Sum_probs=27.7
Q ss_pred CCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCC
Q 045270 343 PRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKS 383 (440)
Q Consensus 343 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~ 383 (440)
++|++|++++|++++ ++..+..+++|++|++++|+|++++
T Consensus 1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCCCCc
Confidence 467778888888774 4556778888888888888777653
No 59
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.96 E-value=8.3e-06 Score=49.20 Aligned_cols=36 Identities=31% Similarity=0.494 Sum_probs=17.7
Q ss_pred CCcEEEcccCccccCCcccccccccCceecCCCCccc
Q 045270 73 SLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFS 109 (440)
Q Consensus 73 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 109 (440)
+|++|++++|++. .+|..++++++|++|++++|.++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4555555555555 34444555555555555555544
No 60
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.90 E-value=3.6e-05 Score=70.31 Aligned_cols=156 Identities=19% Similarity=0.263 Sum_probs=98.2
Q ss_pred CccccceeecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEEccCc-ccccccCCccCCceeEEE
Q 045270 225 FSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHN-LLVGFQGPYSIPALRFID 303 (440)
Q Consensus 225 ~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~L~~L~ 303 (440)
.+..++.|++++|.++.+|. -.++|+.|.+++|.-....|..+ ..+|++|.+++| .+..+ .++|+.|+
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~L----P~nLe~L~Ls~Cs~L~sL-----P~sLe~L~ 118 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV--LPNELTEITIENCNNLTTLPGSI----PEGLEKLTVCHCPEISGL-----PESVRSLE 118 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC--CCCCCcEEEccCCCCcccCCchh----hhhhhheEccCccccccc-----ccccceEE
Confidence 35789999999999999984 34579999998875434555433 246899999888 55443 34677777
Q ss_pred cCCccccCcccCCCCCccEEEccCCc-cc-ccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCC
Q 045270 304 LSSHQLRGNIHQLPNNLIYIDFSNNN-FT-SSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMK 381 (440)
Q Consensus 304 l~~~~~~~~~~~~~~~L~~L~L~~~~-~~-~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~ 381 (440)
+..+... .+..+|++|+.|.+.++. .. ..++. ..+++|++|++.+|... ..|..+ ..+|+.|.++.+....
T Consensus 119 L~~n~~~-~L~~LPssLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i-~LP~~L--P~SLk~L~ls~n~~~s 191 (426)
T PRK15386 119 IKGSATD-SIKNVPNGLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNI-ILPEKL--PESLQSITLHIEQKTT 191 (426)
T ss_pred eCCCCCc-ccccCcchHhheecccccccccccccc---ccCCcccEEEecCCCcc-cCcccc--cccCcEEEeccccccc
Confidence 7654433 345667788888875432 11 01111 11467888888888765 334333 2578888887653222
Q ss_pred --CCchhhhccccEEECCCC
Q 045270 382 --KSDAFLNCLLQTLDLNGN 399 (440)
Q Consensus 382 --~~~~~~~~~L~~L~l~~n 399 (440)
++...++.++ .|++.++
T Consensus 192 LeI~~~sLP~nl-~L~f~n~ 210 (426)
T PRK15386 192 WNISFEGFPDGL-DIDLQNS 210 (426)
T ss_pred ccCccccccccc-Eechhhh
Confidence 2333444556 6666654
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.90 E-value=1.7e-05 Score=63.82 Aligned_cols=110 Identities=21% Similarity=0.297 Sum_probs=66.3
Q ss_pred CCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCcccccccccccc
Q 045270 71 ISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNA 150 (440)
Q Consensus 71 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~ 150 (440)
..+...+||++|.+. .++ .|..+++|.+|.+.+|+++ .+....-..+++|+.|.+.+|.+. .+ ..+..+ +
T Consensus 41 ~d~~d~iDLtdNdl~-~l~-~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~-~l-~dl~pL-----a 110 (233)
T KOG1644|consen 41 LDQFDAIDLTDNDLR-KLD-NLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQ-EL-GDLDPL-----A 110 (233)
T ss_pred ccccceecccccchh-hcc-cCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchh-hh-hhcchh-----c
Confidence 345666677777665 222 4566667777777777766 444444455566777777777664 11 111112 4
Q ss_pred CcccccEEEcCCCccCC---ccccccccccCccEEeccccccc
Q 045270 151 SSSALDTLDLSGNRLRG---SIPVSVFELKKLTSLLLSSNNLH 190 (440)
Q Consensus 151 ~~~~L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~ 190 (440)
.|++|++|.+-+|++.. .-.-.+..+++|+.|++++....
T Consensus 111 ~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~ 153 (233)
T KOG1644|consen 111 SCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRK 153 (233)
T ss_pred cCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhHH
Confidence 56777777777776652 22234566888999998876654
No 62
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.77 E-value=2.4e-06 Score=64.09 Aligned_cols=91 Identities=20% Similarity=0.235 Sum_probs=70.3
Q ss_pred CceeEEEcCCccccCccc---CCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEE
Q 045270 297 PALRFIDLSSHQLRGNIH---QLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLD 373 (440)
Q Consensus 297 ~~L~~L~l~~~~~~~~~~---~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ 373 (440)
..|+..++++|.+..... ..++.++.+++++|.+. ++|.++.. +|.|+.|++..|.+. ..|..+..+.++-.|+
T Consensus 53 ~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aa-m~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 53 YELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAA-MPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred ceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhh-hHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 344555555555543332 23567888889999988 89998666 999999999999998 6788888899999999
Q ss_pred cCCCcCCCCCchhhhcc
Q 045270 374 LSNNSFMKKSDAFLNCL 390 (440)
Q Consensus 374 l~~n~i~~~~~~~~~~~ 390 (440)
..+|.+..++...+.+.
T Consensus 130 s~~na~~eid~dl~~s~ 146 (177)
T KOG4579|consen 130 SPENARAEIDVDLFYSS 146 (177)
T ss_pred CCCCccccCcHHHhccc
Confidence 99999998877766544
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.43 E-value=0.00034 Score=54.20 Aligned_cols=116 Identities=22% Similarity=0.285 Sum_probs=50.2
Q ss_pred CCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchhh--hccccEEE
Q 045270 318 NNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFL--NCLLQTLD 395 (440)
Q Consensus 318 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~--~~~L~~L~ 395 (440)
.+|+.+.+.. .+. .++...+..++.|+.+.+.++ +.......|..+++++.+.+.+ .+..++...+ ...|+.++
T Consensus 12 ~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~ 87 (129)
T PF13306_consen 12 SNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNID 87 (129)
T ss_dssp TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEE
T ss_pred CCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccc
Confidence 3455555543 233 455555555666777777664 5445555666676677777754 4444433222 34477777
Q ss_pred CCCCcccCCchhhhhcCCCCcEEECCCCcccccCcccccCCCCCC
Q 045270 396 LNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSLH 440 (440)
Q Consensus 396 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 440 (440)
+..+ +.......|.++ +|+.+.+.. .+.......|.+|++||
T Consensus 88 ~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~ 129 (129)
T PF13306_consen 88 IPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK 129 (129)
T ss_dssp ETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred cCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence 7554 444445567776 777777765 44445556677777765
No 64
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.28 E-value=0.00097 Score=51.64 Aligned_cols=60 Identities=15% Similarity=0.260 Sum_probs=21.4
Q ss_pred cccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCC
Q 045270 42 SLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFS 104 (440)
Q Consensus 42 ~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~ 104 (440)
.|..+++|+.+.+.. .+... ...+|..+++|+.+.+.++ +......+|.+++.|+++.+.
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I-~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~ 66 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKI-GENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFP 66 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE--TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEET
T ss_pred HHhCCCCCCEEEECC-CeeEe-Chhhccccccccccccccc-ccccceeeeeccccccccccc
Confidence 455555555555542 22211 2233444555555555443 332223334444444444443
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.17 E-value=0.00023 Score=60.00 Aligned_cols=38 Identities=24% Similarity=0.239 Sum_probs=16.9
Q ss_pred ccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCcc
Q 045270 121 LNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRL 165 (440)
Q Consensus 121 ~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~ 165 (440)
++|+++++++|++.. ++.+..+ ..+.+|..|++.+|..
T Consensus 91 P~l~~l~ls~Nki~~--lstl~pl-----~~l~nL~~Ldl~n~~~ 128 (260)
T KOG2739|consen 91 PNLKVLNLSGNKIKD--LSTLRPL-----KELENLKSLDLFNCSV 128 (260)
T ss_pred CceeEEeecCCcccc--ccccchh-----hhhcchhhhhcccCCc
Confidence 555555555554431 3333322 2224455555555543
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=7.5e-05 Score=63.27 Aligned_cols=97 Identities=22% Similarity=0.179 Sum_probs=67.6
Q ss_pred CCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchhh---hccccEE
Q 045270 318 NNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFL---NCLLQTL 394 (440)
Q Consensus 318 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~---~~~L~~L 394 (440)
.+.+.|+.-||.+. + ..+...||.|+.|.++-|+++.. ..+..|++|++|.|..|.|.++..... .++|+.|
T Consensus 19 ~~vkKLNcwg~~L~-D--Isic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLD-D--ISICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHhhhhcccCCCcc-H--HHHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 46778888888776 3 34455588888888888888743 347788888888888888877744444 4557888
Q ss_pred ECCCCcccCCch-----hhhhcCCCCcEEE
Q 045270 395 DLNGNRLQGTVP-----KSIANCKMLEVLN 419 (440)
Q Consensus 395 ~l~~n~~~~~~~-----~~~~~l~~L~~L~ 419 (440)
.|..|+..+..+ ..+.-+|+|++||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 887777665443 2355677777764
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.04 E-value=8.9e-05 Score=71.98 Aligned_cols=114 Identities=25% Similarity=0.135 Sum_probs=54.8
Q ss_pred ccCCCCeEEecCCccC-CCccccchhcCCCCcEEEcccC-ccccCC----cccccccccCceecCCCCc-ccCccchhhh
Q 045270 45 SLHYLRSLNLARTSFN-GTQIPSKLANISSLTYLNLSDA-GFAGHI----PLQISSMARLVALDFSFNQ-FSGSISSIRW 117 (440)
Q Consensus 45 ~l~~L~~L~l~~~~~~-~~~l~~~~~~l~~L~~L~l~~~-~~~~~~----~~~~~~l~~L~~L~L~~~~-~~~~~~~~~~ 117 (440)
.++.|+.+.+..+... ...+-.....+++|+.|+++++ ...... ......+++|+.|+++++. +++..-....
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~ 265 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALA 265 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHH
Confidence 3566666666655332 2112233445666777776652 111011 1122345666666666666 3322222222
Q ss_pred cccccceEEEecCCc-cCCCCCccccccccccccCcccccEEEcCCCcc
Q 045270 118 EHLLNLVYAVLSDNS-LNGSIPRSMFEFPIFSNASSSALDTLDLSGNRL 165 (440)
Q Consensus 118 ~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~ 165 (440)
..+++|+.|.+..|. +++..-..+. ..++.|++|+++++..
T Consensus 266 ~~c~~L~~L~l~~c~~lt~~gl~~i~-------~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 266 SRCPNLETLSLSNCSNLTDEGLVSIA-------ERCPSLRELDLSGCHG 307 (482)
T ss_pred hhCCCcceEccCCCCccchhHHHHHH-------HhcCcccEEeeecCcc
Confidence 335666766666555 3322222222 3445666776666543
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.94 E-value=5.5e-05 Score=64.05 Aligned_cols=85 Identities=20% Similarity=0.145 Sum_probs=52.2
Q ss_pred CcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchhhhccccEEECCCCcccCCch-hhhhcCCCCcEEECCC
Q 045270 344 RLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVP-KSIANCKMLEVLNLGN 422 (440)
Q Consensus 344 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~ 422 (440)
+.+.|+..+|.+.++ .....++.|+.|.|+-|+|++.........|++|+|..|.|.+.-. +.+.++|+|+.|+|..
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence 455666666666643 2234566777777777777766555555557777777777664432 3456677777777777
Q ss_pred CcccccCc
Q 045270 423 NQFSDKFP 430 (440)
Q Consensus 423 n~~~~~~~ 430 (440)
|+=.+..+
T Consensus 98 NPCc~~ag 105 (388)
T KOG2123|consen 98 NPCCGEAG 105 (388)
T ss_pred CCcccccc
Confidence 66555443
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.80 E-value=0.00016 Score=70.25 Aligned_cols=14 Identities=21% Similarity=0.311 Sum_probs=8.1
Q ss_pred cCCCcceEeccccc
Q 045270 341 FMPRLRYFCAANNG 354 (440)
Q Consensus 341 ~~~~L~~L~l~~~~ 354 (440)
.++.++.+.+..+.
T Consensus 360 ~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 360 SCPKLTDLSLSYCG 373 (482)
T ss_pred cCCCcchhhhhhhh
Confidence 35566666665555
No 70
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.72 E-value=0.00091 Score=56.48 Aligned_cols=103 Identities=24% Similarity=0.263 Sum_probs=60.4
Q ss_pred ccccEEEcCCCccCCccccccccccCccEEeccccc--cccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccc
Q 045270 153 SALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNN--LHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLE 230 (440)
Q Consensus 153 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 230 (440)
..|+.+.+.+..++ + ...+..+++|++|.++.|. +.+.... ....+++|+++++++|.+........+..+++|.
T Consensus 43 ~~le~ls~~n~glt-t-~~~~P~Lp~LkkL~lsdn~~~~~~~l~v-l~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~ 119 (260)
T KOG2739|consen 43 VELELLSVINVGLT-T-LTNFPKLPKLKKLELSDNYRRVSGGLEV-LAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK 119 (260)
T ss_pred cchhhhhhhcccee-e-cccCCCcchhhhhcccCCccccccccee-hhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence 34555555555444 1 1234556777777777773 3322221 1234577777777777776433333355666777
Q ss_pred eeecCCCCCCCCCC-----CcccCcccEEeccC
Q 045270 231 LLNLASCKLREIPN-----LKNQSQLQYLYLSE 258 (440)
Q Consensus 231 ~L~l~~~~l~~l~~-----~~~~~~L~~L~l~~ 258 (440)
.|++.+|..+.+.. |.-+++|+.|+-..
T Consensus 120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d 152 (260)
T KOG2739|consen 120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD 152 (260)
T ss_pred hhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence 78888877766544 66677777776544
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.43 E-value=0.0012 Score=32.93 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=13.3
Q ss_pred CCcEEECCCCcccccCcccccCC
Q 045270 414 MLEVLNLGNNQFSDKFPCWLYDA 436 (440)
Q Consensus 414 ~L~~L~l~~n~~~~~~~~~l~~~ 436 (440)
+|++|++++|+++ .+|+.|++|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEES-EEGTTTTT-
T ss_pred CccEEECCCCcCE-eCChhhcCC
Confidence 3667777777666 556555543
No 72
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.08 E-value=0.0071 Score=49.19 Aligned_cols=81 Identities=21% Similarity=0.185 Sum_probs=53.9
Q ss_pred CcceEecccccccccchhhhhccCCCCEEEcCCCcCCCC-Cc---hhhhccccEEECCCC-cccCCchhhhhcCCCCcEE
Q 045270 344 RLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKK-SD---AFLNCLLQTLDLNGN-RLQGTVPKSIANCKMLEVL 418 (440)
Q Consensus 344 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~-~~---~~~~~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L 418 (440)
.++.++-+++.+..+--+.+.+++.++.|.+.+|+--+. .- ....++|+.|+|++| .|++.....+..+++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 456777777777666666677777778887777754322 11 113566888888877 4666666777888888887
Q ss_pred ECCCCc
Q 045270 419 NLGNNQ 424 (440)
Q Consensus 419 ~l~~n~ 424 (440)
.+.+=+
T Consensus 182 ~l~~l~ 187 (221)
T KOG3864|consen 182 HLYDLP 187 (221)
T ss_pred HhcCch
Confidence 776543
No 73
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=94.82 E-value=0.014 Score=34.98 Aligned_cols=18 Identities=56% Similarity=1.350 Sum_probs=12.4
Q ss_pred CCCCCC--CCCcceeeeeeC
Q 045270 1 MQWRQS--TDCCDWSGVDCD 18 (440)
Q Consensus 1 ~~w~~~--~~~~~~~~~~~~ 18 (440)
.+|+.. .++|.|.||+|+
T Consensus 24 ~~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 24 SSWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp TT--TT--S-CCCSTTEEE-
T ss_pred ccCCCcCCCCCeeeccEEeC
Confidence 479986 899999999995
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.64 E-value=0.014 Score=29.06 Aligned_cols=12 Identities=42% Similarity=0.747 Sum_probs=5.3
Q ss_pred CcEEEcccCccc
Q 045270 74 LTYLNLSDAGFA 85 (440)
Q Consensus 74 L~~L~l~~~~~~ 85 (440)
|++|++++|.++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 344444444444
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.28 E-value=0.0097 Score=48.42 Aligned_cols=83 Identities=22% Similarity=0.146 Sum_probs=53.2
Q ss_pred CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhc-CCCCcEEEcccC-ccccCCcccccccccC
Q 045270 21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLAN-ISSLTYLNLSDA-GFAGHIPLQISSMARL 98 (440)
Q Consensus 21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~-l~~L~~L~l~~~-~~~~~~~~~~~~l~~L 98 (440)
..|..+|-++..+..+..+ -+..++.++.|.+.+|+.....-.+.+++ .++|+.|++++| +|++..-..+.++++|
T Consensus 101 ~~IeaVDAsds~I~~eGle--~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknL 178 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEGLE--HLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNL 178 (221)
T ss_pred ceEEEEecCCchHHHHHHH--HHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhh
Confidence 4577788888877765554 56777777778887777654322233332 477888888766 3554444455666777
Q ss_pred ceecCCC
Q 045270 99 VALDFSF 105 (440)
Q Consensus 99 ~~L~L~~ 105 (440)
+.|.+.+
T Consensus 179 r~L~l~~ 185 (221)
T KOG3864|consen 179 RRLHLYD 185 (221)
T ss_pred HHHHhcC
Confidence 7776654
No 76
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=94.01 E-value=0.037 Score=25.47 Aligned_cols=11 Identities=64% Similarity=0.812 Sum_probs=3.5
Q ss_pred CCEEEcCCCcC
Q 045270 369 LSLLDLSNNSF 379 (440)
Q Consensus 369 L~~L~l~~n~i 379 (440)
|+.|++++|++
T Consensus 3 L~~L~l~~n~L 13 (17)
T PF13504_consen 3 LRTLDLSNNRL 13 (17)
T ss_dssp -SEEEETSS--
T ss_pred cCEEECCCCCC
Confidence 44444444443
No 77
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=93.20 E-value=0.019 Score=29.24 Aligned_cols=21 Identities=43% Similarity=0.472 Sum_probs=11.1
Q ss_pred CCCcEEECCCCcccccCcccc
Q 045270 413 KMLEVLNLGNNQFSDKFPCWL 433 (440)
Q Consensus 413 ~~L~~L~l~~n~~~~~~~~~l 433 (440)
++|+.|++++|.+++.....|
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~l 22 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASAL 22 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHHh
Confidence 556666666666665554443
No 78
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.12 E-value=0.0062 Score=50.63 Aligned_cols=82 Identities=15% Similarity=0.127 Sum_probs=45.2
Q ss_pred CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCce
Q 045270 21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVA 100 (440)
Q Consensus 21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 100 (440)
.+++.||++.++...... .|+.++.|..|+++.+.+. .+|..++....++.+++..|... ..|.++...+++++
T Consensus 42 kr~tvld~~s~r~vn~~~---n~s~~t~~~rl~~sknq~~--~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~ 115 (326)
T KOG0473|consen 42 KRVTVLDLSSNRLVNLGK---NFSILTRLVRLDLSKNQIK--FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKK 115 (326)
T ss_pred ceeeeehhhhhHHHhhcc---chHHHHHHHHHhccHhhHh--hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcch
Confidence 456666666665543111 3555555566666555442 24555555555666666555554 55666666666666
Q ss_pred ecCCCCcc
Q 045270 101 LDFSFNQF 108 (440)
Q Consensus 101 L~L~~~~~ 108 (440)
+++-.+.+
T Consensus 116 ~e~k~~~~ 123 (326)
T KOG0473|consen 116 NEQKKTEF 123 (326)
T ss_pred hhhccCcc
Confidence 66655543
No 79
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=91.40 E-value=0.0026 Score=60.54 Aligned_cols=85 Identities=26% Similarity=0.340 Sum_probs=40.9
Q ss_pred CCcceEeccccccccc----chhhhhccCC-CCEEEcCCCcCCCCCchh-----h-h-ccccEEECCCCcccCCch----
Q 045270 343 PRLRYFCAANNGLTGI----IPASLCNATT-LSLLDLSNNSFMKKSDAF-----L-N-CLLQTLDLNGNRLQGTVP---- 406 (440)
Q Consensus 343 ~~L~~L~l~~~~l~~~----~~~~~~~~~~-L~~L~l~~n~i~~~~~~~-----~-~-~~L~~L~l~~n~~~~~~~---- 406 (440)
..+++|.+++|.++.. ....+...++ +..|+++.|++.+..... . . +.+++++++.|++++...
T Consensus 204 ~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~ 283 (478)
T KOG4308|consen 204 SSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLA 283 (478)
T ss_pred ccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHH
Confidence 3455555655555421 1222333344 455666666555431111 1 1 235666666666664433
Q ss_pred hhhhcCCCCcEEECCCCcccc
Q 045270 407 KSIANCKMLEVLNLGNNQFSD 427 (440)
Q Consensus 407 ~~~~~l~~L~~L~l~~n~~~~ 427 (440)
+.+..++.++.+.+++|++.+
T Consensus 284 ~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 284 EVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHhhhHHHHHhhcccCcccc
Confidence 233445566666666665543
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=91.20 E-value=0.24 Score=25.65 Aligned_cols=18 Identities=39% Similarity=0.420 Sum_probs=9.1
Q ss_pred CCCCEEEcCCCcCCCCCc
Q 045270 367 TTLSLLDLSNNSFMKKSD 384 (440)
Q Consensus 367 ~~L~~L~l~~n~i~~~~~ 384 (440)
++|+.|++++|+|..+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00369 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 345555555555555443
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=91.20 E-value=0.24 Score=25.65 Aligned_cols=18 Identities=39% Similarity=0.420 Sum_probs=9.1
Q ss_pred CCCCEEEcCCCcCCCCCc
Q 045270 367 TTLSLLDLSNNSFMKKSD 384 (440)
Q Consensus 367 ~~L~~L~l~~n~i~~~~~ 384 (440)
++|+.|++++|+|..+|.
T Consensus 2 ~~L~~L~L~~N~l~~lp~ 19 (26)
T smart00370 2 PNLRELDLSNNQLSSLPP 19 (26)
T ss_pred CCCCEEECCCCcCCcCCH
Confidence 345555555555555443
No 82
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=86.35 E-value=0.021 Score=47.54 Aligned_cols=88 Identities=13% Similarity=0.104 Sum_probs=59.0
Q ss_pred cccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccc
Q 045270 42 SLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLL 121 (440)
Q Consensus 42 ~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~ 121 (440)
.+..+...+.||++.++... +...|.-++.|..|+++.+++. ..|..+.....++++++.+|..+..+. .++..+
T Consensus 37 ei~~~kr~tvld~~s~r~vn--~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~~p~--s~~k~~ 111 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLVN--LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQQPK--SQKKEP 111 (326)
T ss_pred hhhccceeeeehhhhhHHHh--hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhhCCc--cccccC
Confidence 57777777888887776643 4455666777777788777776 677777777777777777776652222 256666
Q ss_pred cceEEEecCCccC
Q 045270 122 NLVYAVLSDNSLN 134 (440)
Q Consensus 122 ~L~~L~l~~~~~~ 134 (440)
.++++++.++.+.
T Consensus 112 ~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 112 HPKKNEQKKTEFF 124 (326)
T ss_pred CcchhhhccCcch
Confidence 6666666665543
No 83
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=81.55 E-value=0.018 Score=55.04 Aligned_cols=166 Identities=22% Similarity=0.191 Sum_probs=102.8
Q ss_pred CceEEEeeccceeecccCC--Ccccccc-CCCCeEEecCCccCCCc---cccchhcCCCCcEEEcccCccc----cCCcc
Q 045270 21 GHVIGLDLSTESISGGIEN--AASLFSL-HYLRSLNLARTSFNGTQ---IPSKLANISSLTYLNLSDAGFA----GHIPL 90 (440)
Q Consensus 21 ~~l~~L~l~~~~~~~~~~~--~~~~~~l-~~L~~L~l~~~~~~~~~---l~~~~~~l~~L~~L~l~~~~~~----~~~~~ 90 (440)
.++..|++++|.+.+.... ...+... ..+++|++..|.+.... +.+.+....+++.++++.|.+. -.++.
T Consensus 115 ~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~ 194 (478)
T KOG4308|consen 115 PTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQ 194 (478)
T ss_pred ccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhh
Confidence 5677888888877632211 0122232 56677777777765432 4555666788888888888763 12333
Q ss_pred ccc----ccccCceecCCCCcccCcc---chhhhccccc-ceEEEecCCccCCCCCccccccccccccCc-ccccEEEcC
Q 045270 91 QIS----SMARLVALDFSFNQFSGSI---SSIRWEHLLN-LVYAVLSDNSLNGSIPRSMFEFPIFSNASS-SALDTLDLS 161 (440)
Q Consensus 91 ~~~----~l~~L~~L~L~~~~~~~~~---~~~~~~~l~~-L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~-~~L~~L~l~ 161 (440)
.+. ....+++|.+++|.++... ...++...+. +.++++..|.+.+.....+...- ... ..+++++++
T Consensus 195 ~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l----~~~~~~l~~l~l~ 270 (478)
T KOG4308|consen 195 ALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCL----SVLSETLRVLDLS 270 (478)
T ss_pred hhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHh----cccchhhhhhhhh
Confidence 333 4668899999998876322 2224455555 66788888887644222221111 112 467889999
Q ss_pred CCccCCc----cccccccccCccEEeccccccc
Q 045270 162 GNRLRGS----IPVSVFELKKLTSLLLSSNNLH 190 (440)
Q Consensus 162 ~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~ 190 (440)
.|.+... +...+..++.++.+.+..|.+.
T Consensus 271 ~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 271 RNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred cCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 9988732 3445566788999999988875
No 84
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=80.29 E-value=1.6 Score=22.65 Aligned_cols=16 Identities=50% Similarity=0.513 Sum_probs=9.2
Q ss_pred CCCCEEEcCCCcCCCC
Q 045270 367 TTLSLLDLSNNSFMKK 382 (440)
Q Consensus 367 ~~L~~L~l~~n~i~~~ 382 (440)
++|+.|++++|+|+.+
T Consensus 2 ~~L~~L~L~~NkI~~I 17 (26)
T smart00365 2 TNLEELDLSQNKIKKI 17 (26)
T ss_pred CccCEEECCCCcccee
Confidence 4556666666666544
No 85
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=78.93 E-value=1.2 Score=23.59 Aligned_cols=14 Identities=43% Similarity=0.688 Sum_probs=6.7
Q ss_pred ccEEECCCCcccCC
Q 045270 391 LQTLDLNGNRLQGT 404 (440)
Q Consensus 391 L~~L~l~~n~~~~~ 404 (440)
|++|+|++|.+.+.
T Consensus 4 L~~LdL~~N~i~~~ 17 (28)
T smart00368 4 LRELDLSNNKLGDE 17 (28)
T ss_pred cCEEECCCCCCCHH
Confidence 44555555554433
No 86
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=73.23 E-value=10 Score=35.78 Aligned_cols=16 Identities=38% Similarity=0.445 Sum_probs=9.0
Q ss_pred CCCCEEEcCCCcCCCC
Q 045270 367 TTLSLLDLSNNSFMKK 382 (440)
Q Consensus 367 ~~L~~L~l~~n~i~~~ 382 (440)
+.+..|++++|...+.
T Consensus 440 qtl~kldisgn~mgd~ 455 (553)
T KOG4242|consen 440 QTLAKLDISGNGMGDG 455 (553)
T ss_pred cccccccccCCCcccC
Confidence 4566666666655444
No 87
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=70.09 E-value=3.6 Score=21.31 Aligned_cols=17 Identities=29% Similarity=0.542 Sum_probs=10.9
Q ss_pred ccceeecCCCCCCCCCC
Q 045270 228 MLELLNLASCKLREIPN 244 (440)
Q Consensus 228 ~L~~L~l~~~~l~~l~~ 244 (440)
.|+.|++++|+++.+|.
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 46666666666666665
No 88
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=68.88 E-value=3.1 Score=39.80 Aligned_cols=84 Identities=25% Similarity=0.228 Sum_probs=50.2
Q ss_pred cCCCcceEeccccccccc--chhhhhccCCCCEEEcCCC--cCCCCCchhh--hccccEEECCCCcccCCch---hhh--
Q 045270 341 FMPRLRYFCAANNGLTGI--IPASLCNATTLSLLDLSNN--SFMKKSDAFL--NCLLQTLDLNGNRLQGTVP---KSI-- 409 (440)
Q Consensus 341 ~~~~L~~L~l~~~~l~~~--~~~~~~~~~~L~~L~l~~n--~i~~~~~~~~--~~~L~~L~l~~n~~~~~~~---~~~-- 409 (440)
..|.+..+.+++|++-.. ....-+..|.|+.|+|++| .+........ ..-|++|.+.||++..... +.+
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~ 295 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSA 295 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHH
Confidence 367888888999977543 1222244588999999998 4433322222 2338899999998775422 112
Q ss_pred --hcCCCCcEEECCCCccc
Q 045270 410 --ANCKMLEVLNLGNNQFS 426 (440)
Q Consensus 410 --~~l~~L~~L~l~~n~~~ 426 (440)
.-.|+|..| +|..+.
T Consensus 296 i~~~FPKL~~L--DG~ev~ 312 (585)
T KOG3763|consen 296 IRELFPKLLRL--DGVEVQ 312 (585)
T ss_pred HHHhcchheee--cCcccC
Confidence 235777654 455443
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=65.04 E-value=3.3 Score=39.66 Aligned_cols=34 Identities=26% Similarity=0.300 Sum_probs=15.8
Q ss_pred ccccceeecCCCCCCCCCC----CcccCcccEEeccCc
Q 045270 226 SPMLELLNLASCKLREIPN----LKNQSQLQYLYLSEN 259 (440)
Q Consensus 226 ~~~L~~L~l~~~~l~~l~~----~~~~~~L~~L~l~~~ 259 (440)
.+.+..+.+++|++..+.. -...|+|+.|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 3444455555554444333 223355555555555
No 90
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=64.92 E-value=4.5 Score=20.76 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=14.0
Q ss_pred CCCCcEEECCCCc-ccccC
Q 045270 412 CKMLEVLNLGNNQ-FSDKF 429 (440)
Q Consensus 412 l~~L~~L~l~~n~-~~~~~ 429 (440)
+++|+.|++++|+ +++..
T Consensus 1 c~~L~~L~l~~C~~itD~g 19 (26)
T smart00367 1 CPNLRELDLSGCTNITDEG 19 (26)
T ss_pred CCCCCEeCCCCCCCcCHHH
Confidence 5789999999995 66543
No 91
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=49.80 E-value=61 Score=30.92 Aligned_cols=109 Identities=23% Similarity=0.173 Sum_probs=60.7
Q ss_pred CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccch--hcCCCCcEEEcccCccccCCccccccc---
Q 045270 21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKL--ANISSLTYLNLSDAGFAGHIPLQISSM--- 95 (440)
Q Consensus 21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~l--- 95 (440)
.++++++++.+.+....+....-..++ ++++.|......+..-. ..=..+.+++++.+.....+|.-+..+
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~p----l~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~ 240 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGNP----LSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGT 240 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCCc----cchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhh
Confidence 678899999988765554321122222 55555655433111111 112457888888887776666555333
Q ss_pred ccCceecCCCCcccCcc--chhhhcccccceEEEecCCcc
Q 045270 96 ARLVALDFSFNQFSGSI--SSIRWEHLLNLVYAVLSDNSL 133 (440)
Q Consensus 96 ~~L~~L~L~~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~ 133 (440)
.-+++++.+...+.-.. .....+.-++++..+++.|..
T Consensus 241 ~vl~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~ 280 (553)
T KOG4242|consen 241 LVLFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGT 280 (553)
T ss_pred hhhhcccccccccchhhcccccccccccccchhhhccCCC
Confidence 34677777766544222 233445556777777766644
No 92
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=28.00 E-value=75 Score=18.75 Aligned_cols=7 Identities=14% Similarity=0.154 Sum_probs=3.3
Q ss_pred CcceEec
Q 045270 344 RLRYFCA 350 (440)
Q Consensus 344 ~L~~L~l 350 (440)
++++|.+
T Consensus 13 ~l~~L~~ 19 (44)
T PF05725_consen 13 SLKSLIF 19 (44)
T ss_pred CCeEEEE
Confidence 4444444
Done!