Query 045270
Match_columns 440
No_of_seqs 232 out of 2791
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 20:25:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045270.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045270hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.6E-48 5.5E-53 395.0 32.8 424 1-440 31-541 (768)
2 4eco_A Uncharacterized protein 100.0 2.3E-47 7.8E-52 378.1 28.3 413 2-429 59-603 (636)
3 4ecn_A Leucine-rich repeat pro 100.0 6.8E-45 2.3E-49 366.1 29.8 416 2-432 285-846 (876)
4 3rgz_A Protein brassinosteroid 100.0 3.7E-44 1.3E-48 363.1 32.6 340 22-380 179-551 (768)
5 3t6q_A CD180 antigen; protein- 100.0 1.5E-42 5.2E-47 343.7 35.0 403 21-439 33-526 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 4.1E-42 1.4E-46 340.7 28.9 398 21-439 32-523 (606)
7 3t6q_A CD180 antigen; protein- 100.0 2.9E-41 1E-45 334.5 32.8 408 21-439 57-549 (606)
8 2z81_A CD282 antigen, TOLL-lik 100.0 8.5E-42 2.9E-46 334.5 25.9 401 9-430 3-514 (549)
9 1ziw_A TOLL-like receptor 3; i 100.0 3.7E-40 1.3E-44 330.9 37.5 413 21-439 25-586 (680)
10 2z63_A TOLL-like receptor 4, v 100.0 1E-40 3.5E-45 328.5 28.4 399 21-440 28-521 (570)
11 3vq2_A TLR4, TOLL-like recepto 100.0 4E-40 1.4E-44 326.4 28.9 402 21-437 56-544 (606)
12 3j0a_A TOLL-like receptor 5; m 100.0 4.4E-40 1.5E-44 336.6 26.2 133 9-144 13-147 (844)
13 1ziw_A TOLL-like receptor 3; i 100.0 1.1E-38 3.7E-43 320.3 35.5 404 22-433 74-604 (680)
14 4eco_A Uncharacterized protein 100.0 1.2E-39 4.1E-44 322.8 27.5 370 47-434 81-586 (636)
15 4ecn_A Leucine-rich repeat pro 100.0 7.6E-39 2.6E-43 322.3 29.6 371 47-434 323-826 (876)
16 3j0a_A TOLL-like receptor 5; m 100.0 8.6E-39 2.9E-43 327.1 25.9 392 21-427 48-561 (844)
17 2z63_A TOLL-like receptor 4, v 100.0 2.1E-38 7.2E-43 312.0 27.4 397 21-430 52-535 (570)
18 2z7x_B TOLL-like receptor 1, v 100.0 4.6E-39 1.6E-43 312.8 18.2 382 21-428 21-483 (520)
19 3v47_A TOLL-like receptor 5B a 100.0 1.4E-36 4.8E-41 290.5 29.5 349 47-430 30-412 (455)
20 2z81_A CD282 antigen, TOLL-lik 100.0 7.7E-37 2.6E-41 299.3 26.3 399 16-440 3-500 (549)
21 2z7x_B TOLL-like receptor 1, v 100.0 1.2E-36 4E-41 295.9 25.8 389 24-440 3-471 (520)
22 4g8a_A TOLL-like receptor 4; l 100.0 9.3E-36 3.2E-40 297.0 32.1 143 21-175 52-195 (635)
23 3v47_A TOLL-like receptor 5B a 100.0 1E-35 3.6E-40 284.5 26.4 377 6-406 4-412 (455)
24 1o6v_A Internalin A; bacterial 100.0 8.4E-35 2.9E-39 278.4 32.2 344 21-427 46-389 (466)
25 1jl5_A Outer protein YOPM; leu 100.0 2.8E-36 9.5E-41 286.0 21.5 365 21-436 11-421 (454)
26 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.4E-36 1.8E-40 293.6 23.8 377 24-427 34-511 (562)
27 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.5E-35 8.6E-40 288.8 25.8 365 21-406 52-514 (562)
28 1o6v_A Internalin A; bacterial 100.0 5E-33 1.7E-37 266.1 31.6 335 44-440 43-378 (466)
29 1jl5_A Outer protein YOPM; leu 100.0 4.7E-34 1.6E-38 270.8 24.2 343 44-436 8-382 (454)
30 3bz5_A Internalin-J, INLJ; leu 100.0 3.5E-34 1.2E-38 271.8 23.3 346 21-434 42-395 (457)
31 4g8a_A TOLL-like receptor 4; l 100.0 2.4E-33 8.2E-38 279.6 29.6 396 21-426 76-580 (635)
32 1ogq_A PGIP-2, polygalacturona 100.0 2.3E-34 8E-39 260.2 19.3 268 1-286 25-302 (313)
33 3o6n_A APL1; leucine-rich repe 100.0 2.7E-33 9.2E-38 262.0 24.4 350 1-404 4-354 (390)
34 2id5_A Lingo-1, leucine rich r 100.0 1.3E-32 4.4E-37 264.4 23.0 298 47-380 32-333 (477)
35 3oja_B Anopheles plasmodium-re 100.0 2.7E-32 9.2E-37 268.7 24.6 312 45-404 49-360 (597)
36 2id5_A Lingo-1, leucine rich r 100.0 1.8E-32 6.2E-37 263.4 22.2 318 49-404 13-335 (477)
37 3bz5_A Internalin-J, INLJ; leu 100.0 1.3E-31 4.4E-36 254.2 26.3 317 42-427 37-353 (457)
38 4fmz_A Internalin; leucine ric 100.0 2.4E-31 8.1E-36 244.9 27.3 308 42-402 39-346 (347)
39 4fmz_A Internalin; leucine ric 100.0 6.2E-31 2.1E-35 242.2 29.3 307 67-427 39-347 (347)
40 3o6n_A APL1; leucine-rich repe 100.0 2.2E-31 7.4E-36 249.0 25.4 310 70-428 43-354 (390)
41 3oja_B Anopheles plasmodium-re 100.0 2.5E-30 8.6E-35 254.7 25.9 310 71-428 50-360 (597)
42 1z7x_W Ribonuclease inhibitor; 100.0 3.4E-32 1.2E-36 260.6 1.6 385 21-431 3-445 (461)
43 1xku_A Decorin; proteoglycan, 100.0 3.8E-28 1.3E-32 221.8 26.9 288 48-424 32-330 (330)
44 1z7x_W Ribonuclease inhibitor; 100.0 1.5E-31 5.1E-36 256.1 1.7 376 21-418 28-460 (461)
45 2ft3_A Biglycan; proteoglycan, 100.0 5.4E-28 1.9E-32 220.8 22.9 261 153-424 54-331 (332)
46 1xku_A Decorin; proteoglycan, 100.0 5E-27 1.7E-31 214.3 26.7 218 22-262 32-253 (330)
47 2ft3_A Biglycan; proteoglycan, 100.0 3.4E-27 1.2E-31 215.5 24.3 279 153-440 33-323 (332)
48 1ogq_A PGIP-2, polygalacturona 100.0 1.7E-27 5.9E-32 215.2 16.9 246 47-307 50-301 (313)
49 4fcg_A Uncharacterized protein 99.9 5.7E-27 1.9E-31 213.0 17.3 236 4-257 55-309 (328)
50 3g06_A SSPH2 (leucine-rich rep 99.9 1.4E-25 4.7E-30 219.0 25.4 265 97-434 41-305 (622)
51 2z66_A Variable lymphocyte rec 99.9 4.6E-26 1.6E-30 205.7 18.3 241 10-263 7-262 (306)
52 3ogk_B Coronatine-insensitive 99.9 4.6E-28 1.6E-32 239.3 2.7 383 45-438 110-539 (592)
53 2z80_A TOLL-like receptor 2, v 99.9 6.2E-26 2.1E-30 209.0 14.8 274 3-311 23-315 (353)
54 3ogk_B Coronatine-insensitive 99.9 9.1E-28 3.1E-32 237.2 0.4 388 21-423 112-548 (592)
55 1wwl_A Monocyte differentiatio 99.9 1.9E-26 6.5E-31 208.4 8.6 254 44-311 40-310 (312)
56 3zyi_A Leucine-rich repeat-con 99.9 1.1E-24 3.6E-29 207.5 21.0 229 21-264 75-305 (452)
57 2z66_A Variable lymphocyte rec 99.9 4.3E-25 1.5E-29 199.3 17.2 56 50-109 10-65 (306)
58 2z80_A TOLL-like receptor 2, v 99.9 1.8E-25 6.1E-30 206.0 14.6 178 73-262 53-235 (353)
59 3g06_A SSPH2 (leucine-rich rep 99.9 8.5E-24 2.9E-28 206.4 26.3 286 2-366 14-307 (622)
60 3zyj_A Leucine-rich repeat-con 99.9 2.1E-24 7.3E-29 204.7 21.2 228 21-263 64-293 (440)
61 1ozn_A Reticulon 4 receptor; N 99.9 2.9E-25 9.9E-30 198.2 14.1 225 24-265 14-241 (285)
62 3zyj_A Leucine-rich repeat-con 99.9 5.6E-24 1.9E-28 201.8 22.4 250 48-357 44-293 (440)
63 3zyi_A Leucine-rich repeat-con 99.9 6.5E-24 2.2E-28 202.1 22.3 250 48-357 55-304 (452)
64 2o6q_A Variable lymphocyte rec 99.9 4.7E-24 1.6E-28 188.6 19.2 217 6-263 1-219 (270)
65 4fcg_A Uncharacterized protein 99.9 1.1E-23 3.9E-28 191.2 20.4 233 45-288 79-314 (328)
66 2p1m_B Transport inhibitor res 99.9 5.2E-27 1.8E-31 231.9 -2.5 399 21-433 66-526 (594)
67 1ozn_A Reticulon 4 receptor; N 99.9 2.1E-23 7.2E-28 186.2 19.9 206 21-240 32-238 (285)
68 2p1m_B Transport inhibitor res 99.9 1.6E-26 5.5E-31 228.4 -0.6 414 11-440 36-509 (594)
69 3o53_A Protein LRIM1, AGAP0063 99.9 6.8E-25 2.3E-29 198.7 10.0 255 153-423 10-272 (317)
70 1wwl_A Monocyte differentiatio 99.9 1.1E-24 3.9E-29 196.8 8.4 247 21-289 43-310 (312)
71 3o53_A Protein LRIM1, AGAP0063 99.9 9.4E-24 3.2E-28 191.2 14.2 239 22-288 11-250 (317)
72 3oja_A Leucine-rich immune mol 99.9 1.7E-23 5.9E-28 200.2 13.3 235 153-421 34-270 (487)
73 3oja_A Leucine-rich immune mol 99.9 2.4E-22 8.2E-27 192.3 16.5 218 45-288 32-250 (487)
74 2z62_A TOLL-like receptor 4, v 99.9 2.1E-21 7.3E-26 172.3 19.6 207 47-266 28-241 (276)
75 2o6q_A Variable lymphocyte rec 99.9 8.6E-21 2.9E-25 167.6 21.1 202 48-290 17-220 (270)
76 2z62_A TOLL-like receptor 4, v 99.9 1.4E-21 4.8E-26 173.4 16.1 206 21-241 28-238 (276)
77 1p9a_G Platelet glycoprotein I 99.9 5E-21 1.7E-25 170.5 19.2 204 42-263 5-209 (290)
78 3rfs_A Internalin B, repeat mo 99.9 2E-21 6.9E-26 171.8 14.9 209 42-271 36-244 (272)
79 1p9a_G Platelet glycoprotein I 99.9 2.6E-20 8.8E-25 165.9 19.0 196 199-425 7-207 (290)
80 3m19_A Variable lymphocyte rec 99.8 2.1E-20 7.3E-25 163.2 16.0 191 7-215 2-192 (251)
81 2ast_B S-phase kinase-associat 99.8 6.4E-22 2.2E-26 181.1 5.9 262 9-293 36-311 (336)
82 3rfs_A Internalin B, repeat mo 99.8 2.2E-20 7.4E-25 165.2 15.3 199 21-244 41-240 (272)
83 1h6u_A Internalin H; cell adhe 99.8 4.3E-20 1.5E-24 166.2 17.3 196 42-263 36-231 (308)
84 2xwt_C Thyrotropin receptor; s 99.8 2.9E-20 1E-24 161.2 15.5 196 48-259 32-236 (239)
85 3goz_A Leucine-rich repeat-con 99.8 2.9E-21 9.8E-26 178.2 9.1 256 26-289 3-298 (362)
86 2ast_B S-phase kinase-associat 99.8 7.3E-22 2.5E-26 180.7 4.9 222 49-285 49-282 (336)
87 1h6u_A Internalin H; cell adhe 99.8 6.2E-20 2.1E-24 165.1 17.0 195 198-427 37-231 (308)
88 4glp_A Monocyte differentiatio 99.8 4E-21 1.4E-25 173.4 8.7 231 45-289 62-308 (310)
89 2xwt_C Thyrotropin receptor; s 99.8 4.3E-20 1.5E-24 160.1 13.8 197 21-237 31-236 (239)
90 4glp_A Monocyte differentiatio 99.8 1.2E-20 4.1E-25 170.3 10.2 229 21-263 64-308 (310)
91 4ay9_X Follicle-stimulating ho 99.8 1.3E-19 4.4E-24 166.3 16.1 234 10-259 9-256 (350)
92 3goz_A Leucine-rich repeat-con 99.8 7.1E-21 2.4E-25 175.6 7.4 242 21-267 22-302 (362)
93 4ay9_X Follicle-stimulating ho 99.8 2.9E-19 1E-23 163.9 16.2 239 125-423 13-256 (350)
94 2ca6_A RAN GTPase-activating p 99.8 5.6E-21 1.9E-25 178.1 4.3 44 64-107 24-71 (386)
95 2ca6_A RAN GTPase-activating p 99.8 1.1E-20 3.8E-25 176.1 4.2 169 42-214 27-228 (386)
96 3m19_A Variable lymphocyte rec 99.8 2.6E-18 8.8E-23 150.0 17.6 177 48-263 15-193 (251)
97 3cvr_A Invasion plasmid antige 99.8 5E-18 1.7E-22 163.7 16.3 186 202-434 59-251 (571)
98 2o6s_A Variable lymphocyte rec 99.7 6.2E-18 2.1E-22 143.1 11.8 152 48-217 29-180 (208)
99 3e6j_A Variable lymphocyte rec 99.7 2.9E-17 9.9E-22 141.0 16.0 163 2-191 11-173 (229)
100 1h6t_A Internalin B; cell adhe 99.7 3.4E-17 1.2E-21 145.9 15.5 172 69-263 43-214 (291)
101 3cvr_A Invasion plasmid antige 99.7 5.6E-17 1.9E-21 156.4 17.0 138 178-336 60-197 (571)
102 1h6t_A Internalin B; cell adhe 99.7 7.1E-17 2.4E-21 143.8 14.4 170 200-403 44-214 (291)
103 4ezg_A Putative uncharacterize 99.7 7.5E-17 2.6E-21 135.1 13.2 149 276-427 45-195 (197)
104 1m9s_A Internalin B; cell inva 99.7 4.2E-17 1.5E-21 159.0 13.3 176 42-243 38-213 (605)
105 2o6s_A Variable lymphocyte rec 99.7 9.3E-17 3.2E-21 135.9 13.6 167 9-194 6-182 (208)
106 1m9s_A Internalin B; cell inva 99.7 1.5E-16 5E-21 155.3 15.6 106 198-310 39-144 (605)
107 2v70_A SLIT-2, SLIT homolog 2 99.7 3.4E-16 1.2E-20 133.3 15.0 157 24-194 14-170 (220)
108 2v9t_B SLIT homolog 2 protein 99.7 3.2E-16 1.1E-20 133.5 14.3 151 25-190 15-165 (220)
109 4ezg_A Putative uncharacterize 99.7 2.6E-16 9E-21 131.8 12.7 107 69-188 41-147 (197)
110 2v70_A SLIT-2, SLIT homolog 2 99.7 4E-16 1.4E-20 132.9 13.9 150 277-428 13-168 (220)
111 2v9t_B SLIT homolog 2 protein 99.7 5.1E-16 1.7E-20 132.2 13.1 149 277-427 13-166 (220)
112 3e6j_A Variable lymphocyte rec 99.7 1.2E-15 4.1E-20 130.8 15.2 153 48-215 20-172 (229)
113 2xot_A Amphoterin-induced prot 99.7 4.2E-16 1.4E-20 143.5 13.0 175 24-215 21-202 (361)
114 2xot_A Amphoterin-induced prot 99.6 6.5E-16 2.2E-20 142.2 12.2 154 49-216 20-177 (361)
115 1xeu_A Internalin C; cellular 99.6 5E-16 1.7E-20 136.1 10.4 147 45-215 17-163 (263)
116 1xeu_A Internalin C; cellular 99.6 5.4E-16 1.8E-20 135.9 10.1 171 225-404 17-187 (263)
117 1dce_A Protein (RAB geranylger 99.6 1.7E-17 5.7E-22 160.9 -0.5 121 154-281 442-566 (567)
118 3sb4_A Hypothetical leucine ri 99.6 6E-16 2E-20 140.6 9.0 215 176-419 100-327 (329)
119 1dce_A Protein (RAB geranylger 99.6 7.8E-18 2.7E-22 163.3 -5.4 199 224-440 346-563 (567)
120 2ell_A Acidic leucine-rich nuc 99.6 3.1E-15 1E-19 121.9 9.8 132 47-190 24-160 (168)
121 1w8a_A SLIT protein; signaling 99.6 7.9E-15 2.7E-19 122.0 11.3 129 300-428 11-141 (192)
122 4b8c_D Glucose-repressible alc 99.6 1.2E-15 4E-20 152.7 7.3 204 7-237 160-369 (727)
123 2je0_A Acidic leucine-rich nuc 99.6 4.3E-15 1.5E-19 118.4 8.0 128 47-185 17-148 (149)
124 3sb4_A Hypothetical leucine ri 99.6 2.3E-14 7.9E-19 130.1 13.0 100 176-281 225-327 (329)
125 4fs7_A Uncharacterized protein 99.6 2.2E-13 7.6E-18 126.9 19.2 97 339-440 293-391 (394)
126 2wfh_A SLIT homolog 2 protein 99.6 4.2E-14 1.4E-18 117.6 12.7 124 301-426 14-139 (193)
127 2o6r_A Variable lymphocyte rec 99.5 4E-14 1.4E-18 116.3 12.3 130 300-430 10-141 (177)
128 2je0_A Acidic leucine-rich nuc 99.5 2.2E-14 7.6E-19 114.2 9.9 119 318-439 17-142 (149)
129 2ell_A Acidic leucine-rich nuc 99.5 3E-14 1E-18 115.9 10.6 132 71-215 23-160 (168)
130 2o6r_A Variable lymphocyte rec 99.5 7.4E-14 2.5E-18 114.6 10.4 129 25-168 11-139 (177)
131 1w8a_A SLIT protein; signaling 99.5 1.6E-13 5.5E-18 114.1 11.8 132 50-194 11-143 (192)
132 2wfh_A SLIT homolog 2 protein 99.5 6.3E-13 2.2E-17 110.4 13.7 126 24-166 13-139 (193)
133 1a9n_A U2A', U2A'; complex (nu 99.5 1.8E-13 6.1E-18 112.2 9.4 133 42-190 14-153 (176)
134 4b8c_D Glucose-repressible alc 99.5 4.1E-14 1.4E-18 141.5 6.1 169 21-212 191-369 (727)
135 1a9n_A U2A', U2A'; complex (nu 99.4 2.3E-13 7.7E-18 111.6 8.1 129 296-427 18-154 (176)
136 4fdw_A Leucine rich hypothetic 99.4 5.7E-12 1.9E-16 116.8 18.3 239 154-425 136-382 (401)
137 4fdw_A Leucine rich hypothetic 99.4 5E-12 1.7E-16 117.2 17.8 199 228-437 158-369 (401)
138 4fs7_A Uncharacterized protein 99.4 2.1E-11 7.3E-16 113.4 18.9 307 84-440 59-369 (394)
139 3g39_A Variable lymphocyte rec 99.4 3.6E-12 1.2E-16 103.5 10.7 102 321-426 12-115 (170)
140 1ds9_A Outer arm dynein; leuci 99.3 6.4E-14 2.2E-18 117.3 -1.5 125 295-426 46-185 (198)
141 2r9u_A Variable lymphocyte rec 99.3 7.3E-12 2.5E-16 102.0 10.6 101 322-426 16-118 (174)
142 1ds9_A Outer arm dynein; leuci 99.3 5.5E-14 1.9E-18 117.6 -2.6 131 45-190 16-153 (198)
143 4gt6_A Cell surface protein; l 99.3 1.1E-09 3.6E-14 102.0 23.9 102 318-424 265-368 (394)
144 3g39_A Variable lymphocyte rec 99.3 1.6E-11 5.5E-16 99.6 9.9 104 24-134 12-115 (170)
145 2r9u_A Variable lymphocyte rec 99.3 2.2E-11 7.6E-16 99.1 10.0 104 24-134 15-118 (174)
146 3un9_A NLR family member X1; l 99.2 5.7E-13 1.9E-17 122.4 -2.1 167 45-218 70-255 (372)
147 4gt6_A Cell surface protein; l 99.2 4.8E-09 1.6E-13 97.5 23.6 325 42-425 58-390 (394)
148 3un9_A NLR family member X1; l 99.1 4.1E-12 1.4E-16 116.6 -0.6 117 71-190 71-196 (372)
149 4h09_A Hypothetical leucine ri 99.0 6.4E-08 2.2E-12 89.5 20.9 116 295-414 238-357 (379)
150 2ifg_A High affinity nerve gro 98.9 2.7E-09 9.2E-14 97.5 9.1 102 301-403 12-117 (347)
151 2ifg_A High affinity nerve gro 98.9 3.4E-09 1.2E-13 96.8 8.9 104 50-166 11-116 (347)
152 2ra8_A Uncharacterized protein 98.8 4.5E-09 1.5E-13 95.6 5.0 190 42-238 134-341 (362)
153 2ra8_A Uncharacterized protein 98.8 3.2E-08 1.1E-12 90.0 10.4 183 47-240 107-320 (362)
154 4h09_A Hypothetical leucine ri 98.7 2.4E-06 8.3E-11 78.8 21.7 141 294-439 214-358 (379)
155 3e4g_A ATP synthase subunit S, 98.6 4.7E-08 1.6E-12 78.0 4.6 85 343-427 61-154 (176)
156 1io0_A Tropomodulin; LRR prote 98.5 2.2E-08 7.5E-13 82.2 0.9 67 43-109 32-106 (185)
157 1io0_A Tropomodulin; LRR prote 98.4 6.4E-08 2.2E-12 79.4 1.2 71 65-135 29-107 (185)
158 3e4g_A ATP synthase subunit S, 98.4 1.6E-07 5.3E-12 75.0 3.0 83 48-132 62-150 (176)
159 3rw6_A Nuclear RNA export fact 98.3 1.7E-06 5.8E-11 74.5 7.4 78 342-419 169-257 (267)
160 3rw6_A Nuclear RNA export fact 98.2 6.1E-07 2.1E-11 77.3 3.9 98 342-440 140-254 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.3 5.7E-05 2E-09 61.4 1.3 65 45-109 39-111 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.2 0.00015 5.2E-09 58.9 2.8 108 318-425 41-169 (197)
163 3rfe_A Platelet glycoprotein I 97.2 0.00065 2.2E-08 51.5 5.9 35 391-425 33-67 (130)
164 3rfe_A Platelet glycoprotein I 96.6 0.0049 1.7E-07 46.6 6.3 55 301-356 12-68 (130)
165 2lz0_A Uncharacterized protein 56.3 12 0.00041 26.2 3.7 43 333-376 10-52 (100)
166 2lz0_A Uncharacterized protein 53.5 27 0.00094 24.3 5.2 40 171-212 14-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.6e-48 Score=395.02 Aligned_cols=424 Identities=29% Similarity=0.370 Sum_probs=232.7
Q ss_pred CCCCCCCCCcceeeeeeCCCCceEEEeeccceeecc---cCC---------------------CccccccCCCCeEEecC
Q 045270 1 MQWRQSTDCCDWSGVDCDEAGHVIGLDLSTESISGG---IEN---------------------AASLFSLHYLRSLNLAR 56 (440)
Q Consensus 1 ~~w~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~---~~~---------------------~~~~~~l~~L~~L~l~~ 56 (440)
++|+.+++||.|.||+|+ .++|+.|+|+++.+.|. +++ ...+..+++|++|++++
T Consensus 31 ~~W~~~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~ 109 (768)
T 3rgz_A 31 PDWSSNKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSR 109 (768)
T ss_dssp TTCCTTSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCS
T ss_pred cCCCCCCCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCCCcCCCchhhccCCCCCEEECCC
Confidence 479988999999999998 68999999999988775 432 01456666666666666
Q ss_pred CccCCCcccc--chhcCCCCcEEEcccCccccCCcccc-cccccCceecCCCCcccCccchhh--hcccccceEEEecCC
Q 045270 57 TSFNGTQIPS--KLANISSLTYLNLSDAGFAGHIPLQI-SSMARLVALDFSFNQFSGSISSIR--WEHLLNLVYAVLSDN 131 (440)
Q Consensus 57 ~~~~~~~l~~--~~~~l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~--~~~l~~L~~L~l~~~ 131 (440)
|.+.+. +|. .++++++|++|++++|.+.+..|..+ .++++|++|++++|.+.+..+... +..+++|++|++++|
T Consensus 110 n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 188 (768)
T 3rgz_A 110 NSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN 188 (768)
T ss_dssp SEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSS
T ss_pred CcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCC
Confidence 666543 454 56666666666666666665555544 566666677776666664443321 455556666666665
Q ss_pred ccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCC
Q 045270 132 SLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSY 211 (440)
Q Consensus 132 ~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 211 (440)
.+.+..+. ..+++|++|++++|.+.+..|. +..+++|++|++++|.+.+. .+..+..+++|+.|++++
T Consensus 189 ~l~~~~~~----------~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~ 256 (768)
T 3rgz_A 189 KISGDVDV----------SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGD-FSRAISTCTELKLLNISS 256 (768)
T ss_dssp EEESCCBC----------TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSC-HHHHTTTCSSCCEEECCS
T ss_pred cccccCCc----------ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCc-ccHHHhcCCCCCEEECCC
Confidence 55433322 2335666666666666544444 56666666666666665522 233455566666666666
Q ss_pred Cccccc----------------------CCccccCCccccceeecCCCCCC-CCCC-CcccCcccEEeccCcccccccCc
Q 045270 212 NSLAVD----------------------ESSRNYSFSPMLELLNLASCKLR-EIPN-LKNQSQLQYLYLSENQISREIPN 267 (440)
Q Consensus 212 ~~~~~~----------------------~~~~~~~~~~~L~~L~l~~~~l~-~l~~-~~~~~~L~~L~l~~~~~~~~~~~ 267 (440)
|.+... .+......+++|+.|++++|.++ .+|. +..+++|+.|++++|.+.+.+|.
T Consensus 257 n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~ 336 (768)
T 3rgz_A 257 NQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336 (768)
T ss_dssp SCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCH
T ss_pred CcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCH
Confidence 555432 22222222355555555555554 2333 55555566666666655544443
Q ss_pred c-cccccccceeEEEccCcccccccC-C-ccCC-ceeEEEcCCccccCcccCC-----CCCccEEEccCCcccccCCccc
Q 045270 268 W-IWRVSVVGLHCLNLSHNLLVGFQG-P-YSIP-ALRFIDLSSHQLRGNIHQL-----PNNLIYIDFSNNNFTSSIPADT 338 (440)
Q Consensus 268 ~-~~~~~~~~L~~L~l~~~~~~~~~~-~-~~~~-~L~~L~l~~~~~~~~~~~~-----~~~L~~L~L~~~~~~~~~~~~~ 338 (440)
. +. ..++|++|++++|.+....+ . ..++ +|++|++++|.+.+..+.. +++|++|++++|.+.+.+|..+
T Consensus 337 ~~l~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l 414 (768)
T 3rgz_A 337 DTLL--KMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414 (768)
T ss_dssp HHHT--TCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGG
T ss_pred HHHh--cCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHH
Confidence 3 32 23346666666665542211 1 1222 4555555544443221111 2334444444444443444333
Q ss_pred cc-----------------------cCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCC-Cchhh-hccccE
Q 045270 339 GN-----------------------FMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKK-SDAFL-NCLLQT 393 (440)
Q Consensus 339 ~~-----------------------~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~~-~~~L~~ 393 (440)
.. .+++|+.|++++|.+.+..|..+..+++|++|++++|.+... |..+. .++|+.
T Consensus 415 ~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~ 494 (768)
T 3rgz_A 415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 494 (768)
T ss_dssp GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCE
T ss_pred hcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCE
Confidence 33 144445555555544444444555555555555555555433 32222 233666
Q ss_pred EECCCCcccCCchhhhhcCCCCcEEECCCCcccccCcccccCCCCCC
Q 045270 394 LDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSLH 440 (440)
Q Consensus 394 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 440 (440)
|++++|++.+.+|..++.+++|+.|++++|++++.+|..++++++|+
T Consensus 495 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~ 541 (768)
T 3rgz_A 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI 541 (768)
T ss_dssp EECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCC
T ss_pred EEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCC
Confidence 66666666655565666666666666666666666666666555553
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=2.3e-47 Score=378.07 Aligned_cols=413 Identities=20% Similarity=0.262 Sum_probs=330.5
Q ss_pred CCCCCCCCcce---eeeeeCCCCceEEEeeccceeecccCCCccccccCCCCeEEecCCcc------CC-----------
Q 045270 2 QWRQSTDCCDW---SGVDCDEAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSF------NG----------- 61 (440)
Q Consensus 2 ~w~~~~~~~~~---~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~------~~----------- 61 (440)
+|+++.++|.| .||+|+..++|+.|+|+++.+.|..|+ +++.+++|++|++++|.+ ..
T Consensus 59 ~W~~~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp~--~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~ 136 (636)
T 4eco_A 59 NWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPD--AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136 (636)
T ss_dssp CCCCSSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEECG--GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHH
T ss_pred CCCCCCCcccccCCCCeEEcCCCCEEEEEecCcccCCcCCh--HHhcCccceEEECcCCccccCCccccccccccCchHH
Confidence 79999999999 999998889999999999999999987 999999999999999854 00
Q ss_pred -----------------------------------------------------------CccccchhcCCCCcEEEcccC
Q 045270 62 -----------------------------------------------------------TQIPSKLANISSLTYLNLSDA 82 (440)
Q Consensus 62 -----------------------------------------------------------~~l~~~~~~l~~L~~L~l~~~ 82 (440)
..+|..++++++|++|++++|
T Consensus 137 ~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n 216 (636)
T 4eco_A 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNS 216 (636)
T ss_dssp HHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESC
T ss_pred HHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCC
Confidence 116778888999999999999
Q ss_pred ccccC-----------------Cccccc--ccccCceecCCCCcccCccchhhhcccccceEEEecCCc-cCC-CCCccc
Q 045270 83 GFAGH-----------------IPLQIS--SMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNS-LNG-SIPRSM 141 (440)
Q Consensus 83 ~~~~~-----------------~~~~~~--~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~~ 141 (440)
.+.+. +|..+. ++++|++|++++|.+.+.++. .++.+++|++|++++|. +++ .+|..+
T Consensus 217 ~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~Ls~n~~l~~~~lp~~~ 295 (636)
T 4eco_A 217 PFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPT-FLKALPEMQLINVACNRGISGEQLKDDW 295 (636)
T ss_dssp CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCT-TTTTCSSCCEEECTTCTTSCHHHHHHHH
T ss_pred ccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChH-HHhcCCCCCEEECcCCCCCccccchHHH
Confidence 98864 888888 999999999999988877774 68889999999999998 876 688877
Q ss_pred cccccccccCcccccEEEcCCCccCCcccc--ccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCC
Q 045270 142 FEFPIFSNASSSALDTLDLSGNRLRGSIPV--SVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDES 219 (440)
Q Consensus 142 ~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 219 (440)
+.+..+ ..+++|++|++++|.+. .+|. .+..+++|++|++++|.+.+.++ .+..+++|+.|++++|.+...+
T Consensus 296 ~~L~~~--~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~~lp- 369 (636)
T 4eco_A 296 QALADA--PVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQITEIP- 369 (636)
T ss_dssp HHHHHS--GGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEEECC-
T ss_pred Hhhhcc--ccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCcccccc-
Confidence 664211 23468999999999988 7887 88899999999999998876666 6788889999999999887332
Q ss_pred ccccCCccc-cceeecCCCCCCCCCC-Cccc--CcccEEeccCcccccccCcccc-----cccccceeEEEccCcccccc
Q 045270 220 SRNYSFSPM-LELLNLASCKLREIPN-LKNQ--SQLQYLYLSENQISREIPNWIW-----RVSVVGLHCLNLSHNLLVGF 290 (440)
Q Consensus 220 ~~~~~~~~~-L~~L~l~~~~l~~l~~-~~~~--~~L~~L~l~~~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~~ 290 (440)
.. +..+++ |+.|++++|.++.+|. +... ++|+.|++++|.+.+..|..+. .....+|+.|++++|.++.+
T Consensus 370 ~~-l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~l 448 (636)
T 4eco_A 370 AN-FCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKF 448 (636)
T ss_dssp TT-SEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSC
T ss_pred Hh-hhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcC
Confidence 22 667777 9999999999988887 4443 4899999999998887776654 11334699999999998877
Q ss_pred cCC--ccCCceeEEEcCCccccCcccCCCC----------CccEEEccCCcccccCCcccc-ccCCCcceEecccccccc
Q 045270 291 QGP--YSIPALRFIDLSSHQLRGNIHQLPN----------NLIYIDFSNNNFTSSIPADTG-NFMPRLRYFCAANNGLTG 357 (440)
Q Consensus 291 ~~~--~~~~~L~~L~l~~~~~~~~~~~~~~----------~L~~L~L~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~l~~ 357 (440)
+.. ..+++|++|++++|++.......+. +|+.|++++|.+. .+|..++ ..+++|+.|++++|.+++
T Consensus 449 p~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ 527 (636)
T 4eco_A 449 PKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK 527 (636)
T ss_dssp CTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS
T ss_pred CHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC
Confidence 654 3478999999999988744433332 8999999999998 7887776 348999999999999986
Q ss_pred cchhhhhccCCCCEEEcC------CCcCCCC-Cchhh-hccccEEECCCCcccCCchhhhhcCCCCcEEECCCCcccccC
Q 045270 358 IIPASLCNATTLSLLDLS------NNSFMKK-SDAFL-NCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKF 429 (440)
Q Consensus 358 ~~~~~~~~~~~L~~L~l~------~n~i~~~-~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 429 (440)
.|..+..+++|++|+++ +|.+... |..+. .++|++|++++|++. .+|..+. ++|+.|++++|++....
T Consensus 528 -ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~~ 603 (636)
T 4eco_A 528 -FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNISID 603 (636)
T ss_dssp -CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCEEE
T ss_pred -cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCcccc
Confidence 78888889999999994 4555544 54444 456999999999994 5666554 78999999999776543
No 3
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=6.8e-45 Score=366.13 Aligned_cols=416 Identities=19% Similarity=0.237 Sum_probs=306.3
Q ss_pred CCCCCC-----CC--cce------------eeeeeCCCCceEEEeeccceeecccCCCccccccCCCCeEEe-cCCccCC
Q 045270 2 QWRQST-----DC--CDW------------SGVDCDEAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNL-ARTSFNG 61 (440)
Q Consensus 2 ~w~~~~-----~~--~~~------------~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l-~~~~~~~ 61 (440)
+|+.+. ++ |.| .||.|+..++|+.|+|+++.+.|.+|+ .++.+++|++|++ ++|.+.+
T Consensus 285 ~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~ip~--~l~~L~~L~~LdLss~N~lsG 362 (876)
T 4ecn_A 285 NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPD--AIGQLTELKVLSFGTHSETVS 362 (876)
T ss_dssp GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEECG--GGGGCTTCCEEESCCTTHHHH
T ss_pred CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcCch--HHhccccceEeeecccccccc
Confidence 577654 55 999 999999889999999999999999987 9999999999999 6663211
Q ss_pred C---------------------------------------------------------------------------cccc
Q 045270 62 T---------------------------------------------------------------------------QIPS 66 (440)
Q Consensus 62 ~---------------------------------------------------------------------------~l~~ 66 (440)
. .+|.
T Consensus 363 ~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~ 442 (876)
T 4ecn_A 363 GRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK 442 (876)
T ss_dssp TTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECG
T ss_pred cccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccchhH
Confidence 1 0567
Q ss_pred chhcCCCCcEEEcccCcccc-----------------CCccccc--ccccCceecCCCCcccCccchhhhcccccceEEE
Q 045270 67 KLANISSLTYLNLSDAGFAG-----------------HIPLQIS--SMARLVALDFSFNQFSGSISSIRWEHLLNLVYAV 127 (440)
Q Consensus 67 ~~~~l~~L~~L~l~~~~~~~-----------------~~~~~~~--~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~ 127 (440)
.++++++|++|+|++|.+.+ .+|..++ ++++|++|+|++|.+.+.++. .+..+++|+.|+
T Consensus 443 ~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~-~l~~L~~L~~L~ 521 (876)
T 4ecn_A 443 AIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPD-FLYDLPELQSLN 521 (876)
T ss_dssp GGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCG-GGGGCSSCCEEE
T ss_pred HHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChH-HHhCCCCCCEEE
Confidence 78888888888888888876 2777777 888888888888887766664 578888888888
Q ss_pred ecCCc-cCC-CCCccccccccccccCcccccEEEcCCCccCCcccc--ccccccCccEEeccccccccccchhhHhcCCC
Q 045270 128 LSDNS-LNG-SIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPV--SVFELKKLTSLLLSSNNLHGTVQLDKILNLGN 203 (440)
Q Consensus 128 l~~~~-~~~-~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 203 (440)
+++|. +++ .+|..++.++. ....+++|++|++++|.+. .+|. .+..+++|+.|++++|.+. .++ .+..+++
T Consensus 522 Ls~N~~lsg~~iP~~i~~L~~-~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~ 596 (876)
T 4ecn_A 522 IACNRGISAAQLKADWTRLAD-DEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE--AFGTNVK 596 (876)
T ss_dssp CTTCTTSCHHHHHHHHHHHHH-CTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC--CCCTTSE
T ss_pred CcCCCCcccccchHHHHhhhh-cccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch--hhcCCCc
Confidence 88887 776 67776665520 1123457888888888887 7777 7888888888888888876 555 5778888
Q ss_pred CcEEEcCCCcccccCCccccCCccc-cceeecCCCCCCCCCC-Cccc--CcccEEeccCcccccccCccc---ccccccc
Q 045270 204 LAKLDLSYNSLAVDESSRNYSFSPM-LELLNLASCKLREIPN-LKNQ--SQLQYLYLSENQISREIPNWI---WRVSVVG 276 (440)
Q Consensus 204 L~~L~l~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~l~~l~~-~~~~--~~L~~L~l~~~~~~~~~~~~~---~~~~~~~ 276 (440)
|+.|++++|.+... +. .+..+++ |+.|++++|.++.+|. +... ++|+.|++++|.+.+..|... .....++
T Consensus 597 L~~L~Ls~N~l~~l-p~-~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~ 674 (876)
T 4ecn_A 597 LTDLKLDYNQIEEI-PE-DFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGIN 674 (876)
T ss_dssp ESEEECCSSCCSCC-CT-TSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCC
T ss_pred ceEEECcCCccccc-hH-HHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCC
Confidence 88888888887732 22 2566777 8888888888887776 4444 348888888888876555322 2223446
Q ss_pred eeEEEccCcccccccCC--ccCCceeEEEcCCccccCcccCCCC----------CccEEEccCCcccccCCcccc-ccCC
Q 045270 277 LHCLNLSHNLLVGFQGP--YSIPALRFIDLSSHQLRGNIHQLPN----------NLIYIDFSNNNFTSSIPADTG-NFMP 343 (440)
Q Consensus 277 L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~----------~L~~L~L~~~~~~~~~~~~~~-~~~~ 343 (440)
|+.|++++|.+..++.. ..+++|+.|++++|++.......+. +|+.|+|++|.+. .+|..++ ..++
T Consensus 675 L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~ 753 (876)
T 4ecn_A 675 ASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLP 753 (876)
T ss_dssp EEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCT
T ss_pred cCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCC
Confidence 88888888888866554 2478888888888877743332221 7888888888887 7777765 2388
Q ss_pred CcceEecccccccccchhhhhccCCCCEEEcCC------CcCCCC-Cchhh-hccccEEECCCCcccCCchhhhhcCCCC
Q 045270 344 RLRYFCAANNGLTGIIPASLCNATTLSLLDLSN------NSFMKK-SDAFL-NCLLQTLDLNGNRLQGTVPKSIANCKML 415 (440)
Q Consensus 344 ~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~------n~i~~~-~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~l~~L 415 (440)
+|+.|++++|.+++ +|..+..+++|+.|++++ |.+... |..+. .++|+.|++++|++ +.+|..+. ++|
T Consensus 754 ~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L 829 (876)
T 4ecn_A 754 YLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQL 829 (876)
T ss_dssp TCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSS
T ss_pred CcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCC
Confidence 88888888888886 577788888888888866 555443 44443 45588888888888 46665543 688
Q ss_pred cEEECCCCcccccCccc
Q 045270 416 EVLNLGNNQFSDKFPCW 432 (440)
Q Consensus 416 ~~L~l~~n~~~~~~~~~ 432 (440)
+.|++++|++....+..
T Consensus 830 ~~LdLs~N~l~~i~~~~ 846 (876)
T 4ecn_A 830 YILDIADNPNISIDVTS 846 (876)
T ss_dssp CEEECCSCTTCEEECGG
T ss_pred CEEECCCCCCCccChHH
Confidence 88888888876655443
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.7e-44 Score=363.06 Aligned_cols=340 Identities=33% Similarity=0.432 Sum_probs=211.7
Q ss_pred ceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCcee
Q 045270 22 HVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVAL 101 (440)
Q Consensus 22 ~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 101 (440)
++++|++++|.+++.. .+..+++|++|++++|.+... +|. ++.+++|++|++++|.+.+.+|.++.++++|++|
T Consensus 179 ~L~~L~Ls~n~l~~~~----~~~~l~~L~~L~Ls~n~l~~~-~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L 252 (768)
T 3rgz_A 179 ELKHLAISGNKISGDV----DVSRCVNLEFLDVSSNNFSTG-IPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLL 252 (768)
T ss_dssp TCCEEECCSSEEESCC----BCTTCTTCCEEECCSSCCCSC-CCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEE
T ss_pred CCCEEECCCCcccccC----CcccCCcCCEEECcCCcCCCC-Ccc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEE
Confidence 4444444444444322 235566666666666666543 444 6667777777777777666666667777777777
Q ss_pred cCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccE
Q 045270 102 DFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTS 181 (440)
Q Consensus 102 ~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 181 (440)
++++|.+.+.++.. .+++|++|++++|.+.+.+|..++.. +++|++|++++|.+.+..|..+..+++|++
T Consensus 253 ~Ls~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~-------~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 322 (768)
T 3rgz_A 253 NISSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGA-------CDTLTGLDLSGNHFYGAVPPFFGSCSLLES 322 (768)
T ss_dssp ECCSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTT-------CTTCSEEECCSSEEEECCCGGGGGCTTCCE
T ss_pred ECCCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhh-------cCcCCEEECcCCcCCCccchHHhcCCCccE
Confidence 77777666554432 56677777777777666666665432 367888888888777777777777888888
Q ss_pred EeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccc------------------------cCC--ccccceeecC
Q 045270 182 LLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRN------------------------YSF--SPMLELLNLA 235 (440)
Q Consensus 182 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~------------------------~~~--~~~L~~L~l~ 235 (440)
|++++|.+.+.++...+..+++|+.|++++|.+....+... +.. +++|+.|+++
T Consensus 323 L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~ 402 (768)
T 3rgz_A 323 LALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQ 402 (768)
T ss_dssp EECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECC
T ss_pred EECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECC
Confidence 88888877666666667777777777777776653322211 111 3456666666
Q ss_pred CCCCC-CCCC-CcccCcccEEeccCcccccccCcccccccccceeEEEccCcccccccCC--ccCCceeEEEcCCccccC
Q 045270 236 SCKLR-EIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGP--YSIPALRFIDLSSHQLRG 311 (440)
Q Consensus 236 ~~~l~-~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~ 311 (440)
+|.++ .+|. +..+++|+.|++++|.+.+..|..+... ++|+.|++++|.+....+. ..+++|++|++++|++.+
T Consensus 403 ~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l--~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 480 (768)
T 3rgz_A 403 NNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL--SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 480 (768)
T ss_dssp SSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGC--TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred CCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcC--CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccC
Confidence 66554 3343 6666777777777777766666655433 3466677766666543322 346666666666666664
Q ss_pred cccCC---CCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCC
Q 045270 312 NIHQL---PNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFM 380 (440)
Q Consensus 312 ~~~~~---~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~ 380 (440)
..+.. +++|++|++++|.+.+.+|.++.. +++|++|++++|.+.+..|..+..+++|+.|++++|.+.
T Consensus 481 ~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~-l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 551 (768)
T 3rgz_A 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR-LENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFN 551 (768)
T ss_dssp CCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG-CTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEE
T ss_pred cCCHHHhcCCCCCEEEccCCccCCcCChHHhc-CCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccC
Confidence 43322 456666666666666666665554 666666666666666666666666666666666666544
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.5e-42 Score=343.73 Aligned_cols=403 Identities=18% Similarity=0.138 Sum_probs=277.7
Q ss_pred CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCce
Q 045270 21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVA 100 (440)
Q Consensus 21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 100 (440)
.++++|++++|.+++..+. .|..+++|++|++++|.+... .|.+|+++++|++|++++|.+.+..|.++.++++|++
T Consensus 33 ~~l~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 109 (606)
T 3t6q_A 33 NSTECLEFSFNVLPTIQNT--TFSRLINLTFLDLTRCQIYWI-HEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKH 109 (606)
T ss_dssp TTCCEEECTTCCCSEECTT--TSTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCE
T ss_pred CcCcEEEccCCccCcCChh--HhccCccceEEECCCCcccee-ChhhccCccccCeeeCCCCcccccChhhhcccccccE
Confidence 5899999999999987776 899999999999999998765 6888999999999999999999888999999999999
Q ss_pred ecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCcc
Q 045270 101 LDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLT 180 (440)
Q Consensus 101 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 180 (440)
|++++|.+.+ +....+..+++|++|++++|.+.+..+..+..+ ++|++|++++|.+.+..+..+..+++|+
T Consensus 110 L~L~~n~i~~-l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--------~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 180 (606)
T 3t6q_A 110 LFFIQTGISS-IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPT--------EKLKVLDFQNNAIHYLSKEDMSSLQQAT 180 (606)
T ss_dssp EECTTSCCSC-GGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCC--------TTCCEEECCSSCCCEECHHHHHTTTTCC
T ss_pred eeccccCccc-CCcchhccCCcccEEECCCCcccccCcccccCC--------cccCEEEcccCcccccChhhhhhhcccc
Confidence 9999999984 434468999999999999999985332333323 5777777777776654455566666666
Q ss_pred --EEecccccccc-------------------------------------------------------------------
Q 045270 181 --SLLLSSNNLHG------------------------------------------------------------------- 191 (440)
Q Consensus 181 --~L~l~~~~~~~------------------------------------------------------------------- 191 (440)
.|++++|.+.+
T Consensus 181 ~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~ 260 (606)
T 3t6q_A 181 NLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESIN 260 (606)
T ss_dssp SEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEE
T ss_pred eeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEE
Confidence 55665555432
Q ss_pred -------ccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCC--CcccCcccEEeccCcccc
Q 045270 192 -------TVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQIS 262 (440)
Q Consensus 192 -------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~ 262 (440)
.++...+..+++|+.|++++|.++..+. .+..+++|++|++++|.++.++. +..+++|+.|++++|.+.
T Consensus 261 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~ 338 (606)
T 3t6q_A 261 LQKHYFFNISSNTFHCFSGLQELDLTATHLSELPS--GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR 338 (606)
T ss_dssp CTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCS--SCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSC
T ss_pred eecCccCccCHHHhccccCCCEEeccCCccCCCCh--hhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcc
Confidence 1222234455555555555555543221 14445556666666655554422 555555555555555554
Q ss_pred cccCcc-cccccccceeEEEccCccccccc----CCccCCceeEEEcCCccccCcccC---CCCCccEEEccCCcccccC
Q 045270 263 REIPNW-IWRVSVVGLHCLNLSHNLLVGFQ----GPYSIPALRFIDLSSHQLRGNIHQ---LPNNLIYIDFSNNNFTSSI 334 (440)
Q Consensus 263 ~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~---~~~~L~~L~L~~~~~~~~~ 334 (440)
+..+.. +. ..++|++|++++|.+.... ....+++|++|++++|.+.+..+. .+++|++|++++|.+.+..
T Consensus 339 ~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 416 (606)
T 3t6q_A 339 LELGTGCLE--NLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD 416 (606)
T ss_dssp CBCCSSTTT--TCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCT
T ss_pred cccchhhhh--ccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcc
Confidence 333332 22 2344777777777665543 224567777777777766544322 2567778888777776555
Q ss_pred CccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCC--C--chh-hhccccEEECCCCcccCCchhhh
Q 045270 335 PADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKK--S--DAF-LNCLLQTLDLNGNRLQGTVPKSI 409 (440)
Q Consensus 335 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~--~--~~~-~~~~L~~L~l~~n~~~~~~~~~~ 409 (440)
+...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. + ..+ ..++|+.|++++|.+++..|..|
T Consensus 417 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 496 (606)
T 3t6q_A 417 AQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF 496 (606)
T ss_dssp TCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTT
T ss_pred cchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhh
Confidence 555444477888888888877777777777788888888888877652 1 112 23558888888888777777777
Q ss_pred hcCCCCcEEECCCCcccccCcccccCCCCC
Q 045270 410 ANCKMLEVLNLGNNQFSDKFPCWLYDAPSL 439 (440)
Q Consensus 410 ~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L 439 (440)
..+++|+.|++++|++++..|+.+.++++|
T Consensus 497 ~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 526 (606)
T 3t6q_A 497 TSLKMMNHVDLSHNRLTSSSIEALSHLKGI 526 (606)
T ss_dssp TTCTTCCEEECCSSCCCGGGGGGGTTCCSC
T ss_pred ccccCCCEEECCCCccCcCChhHhCccccc
Confidence 778888888888888877777777776654
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4.1e-42 Score=340.69 Aligned_cols=398 Identities=21% Similarity=0.182 Sum_probs=246.4
Q ss_pred CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCce
Q 045270 21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVA 100 (440)
Q Consensus 21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 100 (440)
+++++|++++|.+++..+. .|..+++|++|++++|.+... .|.+|+++++|++|++++|.+.+..|.+|.++++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~i-~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 108 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSY--SFSNFSELQWLDLSRCEIETI-EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLEN 108 (606)
T ss_dssp TTCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCE
T ss_pred CCcCEEECCCCCcCEeChh--hccCCccCcEEeCCCCccccc-CHHHhhchhhcCEeECCCCcccccChhhcCCcccCCE
Confidence 5899999999999887766 899999999999999998765 5778999999999999999999777999999999999
Q ss_pred ecCCCCcccCccchhhhcccccceEEEecCCccCC-CCCccccccccccccCcccccEEEcCCCccCCccccccccccCc
Q 045270 101 LDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNG-SIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKL 179 (440)
Q Consensus 101 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 179 (440)
|++++|.+.+. +...++.+++|++|++++|.+.+ .+|..+..+ ++|++|++++|.+.+..+..+..+++|
T Consensus 109 L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l--------~~L~~L~Ls~n~l~~~~~~~~~~l~~L 179 (606)
T 3vq2_A 109 LVAVETKLASL-ESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL--------TNLVHVDLSYNYIQTITVNDLQFLREN 179 (606)
T ss_dssp EECTTSCCCCS-SSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTC--------TTCCEEECCSSCCCEECTTTTHHHHHC
T ss_pred EEccCCccccc-cccccCCCCCCCEEeCCCCcccceechHhHhhc--------CCCCEEEccCCcceecChhhhhhhhcc
Confidence 99999999844 43358999999999999999975 568877666 577778887777765445444444433
Q ss_pred c----EEeccccccccccchhh----------------------------------------------------------
Q 045270 180 T----SLLLSSNNLHGTVQLDK---------------------------------------------------------- 197 (440)
Q Consensus 180 ~----~L~l~~~~~~~~~~~~~---------------------------------------------------------- 197 (440)
+ +|++++|.+. .++...
T Consensus 180 ~~~l~~L~l~~n~l~-~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l 258 (606)
T 3vq2_A 180 PQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGL 258 (606)
T ss_dssp TTCCCEEECTTCCCC-EECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTG
T ss_pred ccccceeeccCCCcc-eeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhh
Confidence 3 4555554443 222222
Q ss_pred ----------------------HhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEe
Q 045270 198 ----------------------ILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLY 255 (440)
Q Consensus 198 ----------------------~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~ 255 (440)
+..+++|+.|+++++.+.... .+..+++|+.|++.+|.+..+|.+ .+++|+.|+
T Consensus 259 ~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~---~l~~~~~L~~L~l~~n~l~~lp~~-~l~~L~~L~ 334 (606)
T 3vq2_A 259 CDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLE---DVPKHFKWQSLSIIRCQLKQFPTL-DLPFLKSLT 334 (606)
T ss_dssp GGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCC---CCCTTCCCSEEEEESCCCSSCCCC-CCSSCCEEE
T ss_pred hhccHhheeccccccccccccccccCCCCCEEEecCccchhhh---hccccccCCEEEcccccCcccccC-CCCccceee
Confidence 223344444444444443322 244455666666666666666655 666666666
Q ss_pred ccCcccccccCcccccccccceeEEEccCccccccc--C--CccCCceeEEEcCCccccCcc--cCCCCCccEEEccCCc
Q 045270 256 LSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQ--G--PYSIPALRFIDLSSHQLRGNI--HQLPNNLIYIDFSNNN 329 (440)
Q Consensus 256 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~--~~~~~~L~~L~l~~~~~~~~~--~~~~~~L~~L~L~~~~ 329 (440)
+++|...+.. .+ ...++|+.|++++|.+.... + ...+++|++|++++|.+.+.. ...+++|+.|++++|.
T Consensus 335 l~~n~~~~~~--~~--~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~ 410 (606)
T 3vq2_A 335 LTMNKGSISF--KK--VALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHST 410 (606)
T ss_dssp EESCSSCEEC--CC--CCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSE
T ss_pred ccCCcCccch--hh--ccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCc
Confidence 6666433222 11 23455777777777665542 1 134556666666666544322 1124455566665555
Q ss_pred ccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCC--CCchhh-hccccEEECCCCcccCCch
Q 045270 330 FTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMK--KSDAFL-NCLLQTLDLNGNRLQGTVP 406 (440)
Q Consensus 330 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~--~~~~~~-~~~L~~L~l~~n~~~~~~~ 406 (440)
+.+..+...+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+ .+..+. .++|++|++++|++++..|
T Consensus 411 l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 490 (606)
T 3vq2_A 411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISW 490 (606)
T ss_dssp EESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECT
T ss_pred cCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccCh
Confidence 5543332222235555555555555554455555555555555555555543 122221 2335555555555554444
Q ss_pred hhhhcCCCCcEEECCCCcccccCcccccCCCCC
Q 045270 407 KSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSL 439 (440)
Q Consensus 407 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L 439 (440)
..+..+++|+.|++++|++++..|..++++++|
T Consensus 491 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 523 (606)
T 3vq2_A 491 GVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSL 523 (606)
T ss_dssp TTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTC
T ss_pred hhhcccccCCEEECCCCcCCCcCHHHccCCCcC
Confidence 455555555555555555555545555544444
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.9e-41 Score=334.53 Aligned_cols=408 Identities=21% Similarity=0.174 Sum_probs=244.4
Q ss_pred CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCce
Q 045270 21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVA 100 (440)
Q Consensus 21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 100 (440)
+++++|++++|.+++..|. .|..+++|++|++++|.+... .|..|+++++|++|++++|.+.+..+..+.++++|++
T Consensus 57 ~~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~ 133 (606)
T 3t6q_A 57 INLTFLDLTRCQIYWIHED--TFQSQHRLDTLVLTANPLIFM-AETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES 133 (606)
T ss_dssp TTCSEEECTTCCCCEECTT--TTTTCTTCCEEECTTCCCSEE-CTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCE
T ss_pred ccceEEECCCCccceeChh--hccCccccCeeeCCCCccccc-ChhhhcccccccEeeccccCcccCCcchhccCCcccE
Confidence 5788899999888876666 788888899998888888655 5777888888888888888887655677788888888
Q ss_pred ecCCCCcccCccchhhhcccccceEEEecCCccCCCCCcccccccccc--c---------------cC------------
Q 045270 101 LDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFS--N---------------AS------------ 151 (440)
Q Consensus 101 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~--~---------------~~------------ 151 (440)
|++++|.+.+.... .+..+++|++|++++|.+.+..+..+..++.+. . ..
T Consensus 134 L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~ 212 (606)
T 3t6q_A 134 LYLGSNHISSIKLP-KGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT 212 (606)
T ss_dssp EECCSSCCCCCCCC-TTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTC
T ss_pred EECCCCcccccCcc-cccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCc
Confidence 88888877743222 233366777777776666544343333333222 0 00
Q ss_pred --------------------------------------c--ccccEEEcCCCccCCccccccccccCccEEecccccccc
Q 045270 152 --------------------------------------S--SALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHG 191 (440)
Q Consensus 152 --------------------------------------~--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 191 (440)
+ ..|+++++++|.+....+..|..+++|++|++++|.+.
T Consensus 213 ~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~- 291 (606)
T 3t6q_A 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS- 291 (606)
T ss_dssp SCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-
T ss_pred hhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-
Confidence 0 04555666666555444444666667777777766665
Q ss_pred ccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCC-CCCC--CcccCcccEEeccCccccccc--C
Q 045270 192 TVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR-EIPN--LKNQSQLQYLYLSENQISREI--P 266 (440)
Q Consensus 192 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~l~~--~~~~~~L~~L~l~~~~~~~~~--~ 266 (440)
.++. .+..+++|+.|++++|.+....+.. +..+++|+.|++++|.+. .++. +..+++|+.|++++|.+.+.. +
T Consensus 292 ~lp~-~l~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 369 (606)
T 3t6q_A 292 ELPS-GLVGLSTLKKLVLSANKFENLCQIS-ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCN 369 (606)
T ss_dssp CCCS-SCCSCTTCCEEECTTCCCSBGGGGC-GGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEEST
T ss_pred CCCh-hhcccccCCEEECccCCcCcCchhh-hhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcc
Confidence 3332 3556666677777666665443332 455666666666666554 3333 556666666666666665433 3
Q ss_pred cccccccccceeEEEccCcccccccCC--ccCCceeEEEcCCccccCcc----cCCCCCccEEEccCCcccccCCccccc
Q 045270 267 NWIWRVSVVGLHCLNLSHNLLVGFQGP--YSIPALRFIDLSSHQLRGNI----HQLPNNLIYIDFSNNNFTSSIPADTGN 340 (440)
Q Consensus 267 ~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~----~~~~~~L~~L~L~~~~~~~~~~~~~~~ 340 (440)
..+. ..++|++|++++|.+....+. ..+++|++|++++|.+.+.. ...+++|+.|++++|.+.+..+..+..
T Consensus 370 ~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 447 (606)
T 3t6q_A 370 LQLR--NLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG 447 (606)
T ss_dssp TTTT--TCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTT
T ss_pred hhcc--cCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhC
Confidence 3332 233466666666665554332 34566666666666655432 222456666666666665433333333
Q ss_pred cCCCcceEeccccccccc---chhhhhccCCCCEEEcCCCcCCCCCc-hhh-hccccEEECCCCcccCCchhhhhcCCCC
Q 045270 341 FMPRLRYFCAANNGLTGI---IPASLCNATTLSLLDLSNNSFMKKSD-AFL-NCLLQTLDLNGNRLQGTVPKSIANCKML 415 (440)
Q Consensus 341 ~~~~L~~L~l~~~~l~~~---~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~-~~~L~~L~l~~n~~~~~~~~~~~~l~~L 415 (440)
+++|++|++++|.+++. .+..+..+++|++|++++|.+++++. .+. .++|++|++++|++++..|+.+.++++|
T Consensus 448 -l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 526 (606)
T 3t6q_A 448 -LPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI 526 (606)
T ss_dssp -CTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC
T ss_pred -CCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc
Confidence 66666666666666542 12345666666666666666665532 222 2446666666666666666666666666
Q ss_pred cEEECCCCcccccCcccccCCCCC
Q 045270 416 EVLNLGNNQFSDKFPCWLYDAPSL 439 (440)
Q Consensus 416 ~~L~l~~n~~~~~~~~~l~~~~~L 439 (440)
.|++++|.+++..|+.+..+++|
T Consensus 527 -~L~L~~N~l~~~~~~~~~~l~~L 549 (606)
T 3t6q_A 527 -YLNLASNHISIILPSLLPILSQQ 549 (606)
T ss_dssp -EEECCSSCCCCCCGGGHHHHHTS
T ss_pred -EEECcCCcccccCHhhcccCCCC
Confidence 66666666666555555444433
No 8
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=8.5e-42 Score=334.49 Aligned_cols=401 Identities=21% Similarity=0.208 Sum_probs=297.6
Q ss_pred CcceeeeeeCCC------------CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcE
Q 045270 9 CCDWSGVDCDEA------------GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTY 76 (440)
Q Consensus 9 ~~~~~~~~~~~~------------~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~ 76 (440)
.|.|.++ |+.. +++++|++++|.+++..+. .|..+++|++|++++|.+... .+.+|+++++|++
T Consensus 3 ~C~~~~~-c~~~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~ 78 (549)
T 2z81_A 3 SCDASGV-CDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHG--DLRACANLQVLILKSSRINTI-EGDAFYSLGSLEH 78 (549)
T ss_dssp EECTTSE-EECTTSCCSSCCSCCCTTCCEEECCSSCCCEECSS--TTSSCTTCCEEECTTSCCCEE-CTTTTTTCTTCCE
T ss_pred cCCCCce-EECCCCccccccccCCCCccEEECcCCccCccChh--hhhcCCcccEEECCCCCcCcc-ChhhccccccCCE
Confidence 4777776 5321 4899999999999887766 899999999999999998765 6678999999999
Q ss_pred EEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCC-ccccccccccccCcccc
Q 045270 77 LNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIP-RSMFEFPIFSNASSSAL 155 (440)
Q Consensus 77 L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l~~l~~~~~~~L 155 (440)
|++++|.+.+..|..++++++|++|++++|.+.+......++.+++|++|++++|...+.+| ..+.. +++|
T Consensus 79 L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~--------l~~L 150 (549)
T 2z81_A 79 LDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAG--------LTSL 150 (549)
T ss_dssp EECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTT--------CCEE
T ss_pred EECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhc--------cccc
Confidence 99999999977777799999999999999999853333368899999999999998544555 34544 4788
Q ss_pred cEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCc--ccc----------
Q 045270 156 DTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESS--RNY---------- 223 (440)
Q Consensus 156 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~---------- 223 (440)
++|++++|.+.+..|..+..+++|++|++.++... ..+...+..+++|+.|++++|.+...... ...
T Consensus 151 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~ 229 (549)
T 2z81_A 151 NELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLA 229 (549)
T ss_dssp EEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEE
T ss_pred CeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhccccee
Confidence 99999998888777777877777887777777664 44444445567777777777665542100 000
Q ss_pred -----------------------------------------------------------------------------CCc
Q 045270 224 -----------------------------------------------------------------------------SFS 226 (440)
Q Consensus 224 -----------------------------------------------------------------------------~~~ 226 (440)
...
T Consensus 230 l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~ 309 (549)
T 2z81_A 230 FRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLL 309 (549)
T ss_dssp EESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHS
T ss_pred ccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhc
Confidence 011
Q ss_pred cccceeecCCCCCCCCCC--CcccCcccEEeccCcccccccCccc-ccccccceeEEEccCcccccccC----CccCCce
Q 045270 227 PMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWI-WRVSVVGLHCLNLSHNLLVGFQG----PYSIPAL 299 (440)
Q Consensus 227 ~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~L 299 (440)
++|+.|++++|.++.+|. +..+++|+.|++++|.+.+..+... .....++|+.|++++|.++.++. ...+++|
T Consensus 310 ~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L 389 (549)
T 2z81_A 310 EKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNL 389 (549)
T ss_dssp TTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTC
T ss_pred ccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCC
Confidence 345666666666666665 2467788888888887765443221 11234558888888888776543 3567888
Q ss_pred eEEEcCCccccCccc--CCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCC
Q 045270 300 RFIDLSSHQLRGNIH--QLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNN 377 (440)
Q Consensus 300 ~~L~l~~~~~~~~~~--~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n 377 (440)
++|++++|++..... ..+++|++|++++|.+. .++..+ +++|++|++++|.+++.. ..+++|++|++++|
T Consensus 390 ~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~---~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N 461 (549)
T 2z81_A 390 TSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIR-VVKTCI---PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRN 461 (549)
T ss_dssp CEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCS-CCCTTS---CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSS
T ss_pred CEEECCCCCCccCChhhcccccccEEECCCCCcc-cccchh---cCCceEEECCCCChhhhc----ccCChhcEEECCCC
Confidence 888888887764332 23567888888888876 455443 457888888888887542 46889999999999
Q ss_pred cCCCCCchhhhccccEEECCCCcccCCchhhhhcCCCCcEEECCCCcccccCc
Q 045270 378 SFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFP 430 (440)
Q Consensus 378 ~i~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 430 (440)
+++.+|.....++|+.|++++|++++..+..+..+++|+.|++++|++.+..|
T Consensus 462 ~l~~ip~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 462 KLKTLPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCSSCCCGGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred ccCcCCCcccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 99988876667789999999999998888889999999999999999876655
No 9
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.7e-40 Score=330.94 Aligned_cols=413 Identities=22% Similarity=0.251 Sum_probs=230.9
Q ss_pred CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCce
Q 045270 21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVA 100 (440)
Q Consensus 21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 100 (440)
+++++|++++|.+++..+. .|..+++|++|++++|.+... .|.+++++++|++|++++|.+....+.+|.++++|++
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 101 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAA--NFTRYSQLTSLDVGFNTISKL-EPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTE 101 (680)
T ss_dssp TTCSEEECCSSCCCCCCGG--GGGGGTTCSEEECCSSCCCCC-CTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSE
T ss_pred CCCcEEECCCCCCCCcCHH--HHhCCCcCcEEECCCCccCcc-CHHHHhcccCcCEEECCCCccCccChhhhccCCCCCE
Confidence 5899999999998875554 788999999999998888765 6778888889999999888888544446888888888
Q ss_pred ecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccc------------------cCcccccEEEcCC
Q 045270 101 LDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSN------------------ASSSALDTLDLSG 162 (440)
Q Consensus 101 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~------------------~~~~~L~~L~l~~ 162 (440)
|++++|.+. .++...++.+++|++|++++|.+.+..|..+..++.|+. ..+++|++|++++
T Consensus 102 L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~ 180 (680)
T 1ziw_A 102 LHLMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180 (680)
T ss_dssp EECCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTT
T ss_pred EECCCCccC-ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCC
Confidence 888888887 444445788888888888888887666666555543322 1234566666666
Q ss_pred CccCCcccc---------------------------------------------------cccccc--CccEEecccccc
Q 045270 163 NRLRGSIPV---------------------------------------------------SVFELK--KLTSLLLSSNNL 189 (440)
Q Consensus 163 ~~~~~~~~~---------------------------------------------------~~~~~~--~L~~L~l~~~~~ 189 (440)
|.+.+..+. .+..++ +|++|++++|.+
T Consensus 181 n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l 260 (680)
T 1ziw_A 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260 (680)
T ss_dssp CCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCC
T ss_pred CcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCc
Confidence 555432222 222222 255555555555
Q ss_pred ccccchhhHhcCCCCcEEEcCCCcccccCCcc--------------------------------ccCCccccceeecCCC
Q 045270 190 HGTVQLDKILNLGNLAKLDLSYNSLAVDESSR--------------------------------NYSFSPMLELLNLASC 237 (440)
Q Consensus 190 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--------------------------------~~~~~~~L~~L~l~~~ 237 (440)
. .++...+..+++|+.|++++|.+....+.. .+..+++|+.|++++|
T Consensus 261 ~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n 339 (680)
T 1ziw_A 261 N-VVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDN 339 (680)
T ss_dssp C-EECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSC
T ss_pred C-ccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCC
Confidence 4 333344556666666666666554432221 1233444555555555
Q ss_pred CCCCCCC--CcccCcccEEeccCcccccc--cCcccccccccceeEEEccCcccccccCC--ccCCceeEEEcCCccccC
Q 045270 238 KLREIPN--LKNQSQLQYLYLSENQISRE--IPNWIWRVSVVGLHCLNLSHNLLVGFQGP--YSIPALRFIDLSSHQLRG 311 (440)
Q Consensus 238 ~l~~l~~--~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~ 311 (440)
.++.++. +..+++|+.|++++|.+... ....+.....++|+.+++++|.+....+. ..+++|+.|++++|.+.+
T Consensus 340 ~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 419 (680)
T 1ziw_A 340 DIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ 419 (680)
T ss_dssp CBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEE
T ss_pred ccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCcc
Confidence 5544433 44455555555544432110 01111111112345555555554444322 335556666666555443
Q ss_pred cc----cCCCCCccEEEccCCcccc--------------------------cCCccccccCCCcceEecccccccccchh
Q 045270 312 NI----HQLPNNLIYIDFSNNNFTS--------------------------SIPADTGNFMPRLRYFCAANNGLTGIIPA 361 (440)
Q Consensus 312 ~~----~~~~~~L~~L~L~~~~~~~--------------------------~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 361 (440)
.. ...+++|++|++++|.+.+ .+|..+.. +++|+.|++++|.+++..+.
T Consensus 420 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~-l~~L~~L~Ls~N~l~~i~~~ 498 (680)
T 1ziw_A 420 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQP-LRNLTILDLSNNNIANINDD 498 (680)
T ss_dssp ECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTT-CTTCCEEECCSSCCCCCCTT
T ss_pred ccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccccc-CCCCCEEECCCCCCCcCChh
Confidence 21 1223344444444443321 22222222 55566666666665555555
Q ss_pred hhhccCCCCEEEcCCCcCCCCCch----------hhhccccEEECCCCcccCCchhhhhcCCCCcEEECCCCcccccCcc
Q 045270 362 SLCNATTLSLLDLSNNSFMKKSDA----------FLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPC 431 (440)
Q Consensus 362 ~~~~~~~L~~L~l~~n~i~~~~~~----------~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 431 (440)
.+..+++|++|++++|.++.++.. ....+|+.|++++|+++...+..|.++++|+.|++++|.+++..+.
T Consensus 499 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 578 (680)
T 1ziw_A 499 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPAS 578 (680)
T ss_dssp TTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred hhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHh
Confidence 555556666666666555543111 1123356666666665544444556666666666666666554444
Q ss_pred cccCCCCC
Q 045270 432 WLYDAPSL 439 (440)
Q Consensus 432 ~l~~~~~L 439 (440)
.+.++++|
T Consensus 579 ~~~~l~~L 586 (680)
T 1ziw_A 579 VFNNQVSL 586 (680)
T ss_dssp TTTTCTTC
T ss_pred HhCCCCCC
Confidence 45555544
No 10
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=1e-40 Score=328.46 Aligned_cols=399 Identities=22% Similarity=0.228 Sum_probs=288.2
Q ss_pred CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCce
Q 045270 21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVA 100 (440)
Q Consensus 21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 100 (440)
.++++|++++|.+++..+. .|..+++|++|++++|.+... .+.+|+++++|++|++++|.+.+..|.+|.++++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~--~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104 (570)
T ss_dssp SSCCEEECCSCCCCEECTT--TTTTCSSCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred ccccEEEccCCccCccChh--HhhCCCCceEEECCCCcCCcc-CcccccCchhCCEEeCcCCcCCccCHhhhcCcccccc
Confidence 5799999999999886666 899999999999999988764 5678999999999999999998777788999999999
Q ss_pred ecCCCCcccCccchhhhcccccceEEEecCCccCC-CCCccccccccccccCcccccEEEcCCCccCCccccccccccCc
Q 045270 101 LDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNG-SIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKL 179 (440)
Q Consensus 101 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 179 (440)
|++++|.+. .++...++.+++|++|++++|.+.. .+|..+..+ ++|++|++++|.+....+..+..+++|
T Consensus 105 L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l--------~~L~~L~l~~n~l~~~~~~~~~~l~~L 175 (570)
T 2z63_A 105 LVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL--------TNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (570)
T ss_dssp EECTTSCCC-CSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGC--------TTCCEEECTTSCCCEECGGGGHHHHTC
T ss_pred ccccccccc-cCCCccccccccccEEecCCCccceecChhhhccc--------CCCCEEeCcCCccceecHHHccchhcc
Confidence 999999988 4444458999999999999999875 468887665 688889998888875556666666666
Q ss_pred ----cEEeccccccccccchh-----------------------------------------------------------
Q 045270 180 ----TSLLLSSNNLHGTVQLD----------------------------------------------------------- 196 (440)
Q Consensus 180 ----~~L~l~~~~~~~~~~~~----------------------------------------------------------- 196 (440)
+.+++++|.+. .++..
T Consensus 176 ~~~~~~L~l~~n~l~-~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l 254 (570)
T 2z63_A 176 PLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGL 254 (570)
T ss_dssp TTCCCEEECTTCCCC-EECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGG
T ss_pred chhhhhcccCCCCce-ecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccc
Confidence 66777766554 22222
Q ss_pred ----------------------hHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEE
Q 045270 197 ----------------------KILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYL 254 (440)
Q Consensus 197 ----------------------~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L 254 (440)
.+..+++|+.|+++++.+...... +..+ +|+.|++.+|.+..+|. ..+++|+.|
T Consensus 255 ~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~--~~~~-~L~~L~l~~n~~~~l~~-~~l~~L~~L 330 (570)
T 2z63_A 255 CNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF--SYNF-GWQHLELVNCKFGQFPT-LKLKSLKRL 330 (570)
T ss_dssp GGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBC--CSCC-CCSEEEEESCBCSSCCB-CBCSSCCEE
T ss_pred cccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhh--hccC-CccEEeeccCcccccCc-ccccccCEE
Confidence 233345555555555555432211 2333 56666666666665554 456666666
Q ss_pred eccCcccccccCcccccccccceeEEEccCccccccc----CCccCCceeEEEcCCccccCcc--cCCCCCccEEEccCC
Q 045270 255 YLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQ----GPYSIPALRFIDLSSHQLRGNI--HQLPNNLIYIDFSNN 328 (440)
Q Consensus 255 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~--~~~~~~L~~L~L~~~ 328 (440)
++++|.+.+..+. ...++|+.|++++|.+.... ....+++|++|++++|.+.+.. ...+++|++|++++|
T Consensus 331 ~l~~n~~~~~~~~----~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n 406 (570)
T 2z63_A 331 TFTSNKGGNAFSE----VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS 406 (570)
T ss_dssp EEESCBSCCBCCC----CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTS
T ss_pred eCcCCcccccccc----ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCC
Confidence 6666665443332 34556888888888776553 1245778888888887765433 233567888888888
Q ss_pred cccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCC--CCchhh-hccccEEECCCCcccCCc
Q 045270 329 NFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMK--KSDAFL-NCLLQTLDLNGNRLQGTV 405 (440)
Q Consensus 329 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~--~~~~~~-~~~L~~L~l~~n~~~~~~ 405 (440)
.+.+..+...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ +|..+. .++|+.|++++|++++..
T Consensus 407 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~ 486 (570)
T 2z63_A 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS 486 (570)
T ss_dssp EEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEEC
T ss_pred ccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCC
Confidence 87755554444447888888888888877777778888888888888887762 343333 455888888888888777
Q ss_pred hhhhhcCCCCcEEECCCCcccccCcccccCCCCCC
Q 045270 406 PKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSLH 440 (440)
Q Consensus 406 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 440 (440)
|..+..+++|+.|++++|.+++..|..+.++++|+
T Consensus 487 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 521 (570)
T 2z63_A 487 PTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQ 521 (570)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCC
T ss_pred hhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCc
Confidence 77788888888888888888777777777777664
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=4e-40 Score=326.42 Aligned_cols=402 Identities=20% Similarity=0.174 Sum_probs=288.3
Q ss_pred CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCce
Q 045270 21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVA 100 (440)
Q Consensus 21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 100 (440)
+++++|++++|.+++..+. .|..+++|++|++++|.+... .|..|+++++|++|++++|.+.+..+..++++++|++
T Consensus 56 ~~L~~L~Ls~n~l~~i~~~--~~~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 132 (606)
T 3vq2_A 56 SELQWLDLSRCEIETIEDK--AWHGLHHLSNLILTGNPIQSF-SPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKK 132 (606)
T ss_dssp TTCCEEECTTCCCCEECTT--TTTTCTTCCEEECTTCCCCCC-CTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCE
T ss_pred ccCcEEeCCCCcccccCHH--HhhchhhcCEeECCCCccccc-ChhhcCCcccCCEEEccCCccccccccccCCCCCCCE
Confidence 6899999999999887776 899999999999999998765 6889999999999999999998777688999999999
Q ss_pred ecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccc-------------------cCcccccEEEcC
Q 045270 101 LDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSN-------------------ASSSALDTLDLS 161 (440)
Q Consensus 101 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~-------------------~~~~~L~~L~l~ 161 (440)
|++++|.+.+......++.+++|++|++++|.+++..+..+..+..+.. ....+|++|+++
T Consensus 133 L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~ 212 (606)
T 3vq2_A 133 LNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLR 212 (606)
T ss_dssp EECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEE
T ss_pred EeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeecc
Confidence 9999999985332336899999999999999998776776665543320 112367778887
Q ss_pred CCccCC----------------------------------------------------------ccccccccccCccEEe
Q 045270 162 GNRLRG----------------------------------------------------------SIPVSVFELKKLTSLL 183 (440)
Q Consensus 162 ~~~~~~----------------------------------------------------------~~~~~~~~~~~L~~L~ 183 (440)
+|.+.+ ..+. +..+++|+.|+
T Consensus 213 ~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~ 291 (606)
T 3vq2_A 213 GNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMS 291 (606)
T ss_dssp SCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEE
T ss_pred CCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEE
Confidence 775420 1111 44567777777
Q ss_pred ccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEeccCccccc
Q 045270 184 LSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISR 263 (440)
Q Consensus 184 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~ 263 (440)
+.++.+. .++ .+..+++|+.|++++|.+...+ . + .+++|+.|++++|....-..+..+++|+.|++++|.+.+
T Consensus 292 l~~~~~~-~l~--~l~~~~~L~~L~l~~n~l~~lp--~-~-~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~ 364 (606)
T 3vq2_A 292 LAGVSIK-YLE--DVPKHFKWQSLSIIRCQLKQFP--T-L-DLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSF 364 (606)
T ss_dssp EESCCCC-CCC--CCCTTCCCSEEEEESCCCSSCC--C-C-CCSSCCEEEEESCSSCEECCCCCCTTCCEEECCSSCEEE
T ss_pred ecCccch-hhh--hccccccCCEEEcccccCcccc--c-C-CCCccceeeccCCcCccchhhccCCCCCEEECcCCccCC
Confidence 7777775 444 5677888888998888884333 2 3 677888888888743322246677788888888877765
Q ss_pred cc--CcccccccccceeEEEccCcccccccCC-ccCCceeEEEcCCccccCccc----CCCCCccEEEccCCcccccCCc
Q 045270 264 EI--PNWIWRVSVVGLHCLNLSHNLLVGFQGP-YSIPALRFIDLSSHQLRGNIH----QLPNNLIYIDFSNNNFTSSIPA 336 (440)
Q Consensus 264 ~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~----~~~~~L~~L~L~~~~~~~~~~~ 336 (440)
.. +..+. ..++|++|++++|.+...+.. ..+++|++|++++|.+.+..+ ..+++|++|++++|.+.+..|.
T Consensus 365 ~~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 442 (606)
T 3vq2_A 365 SGCCSYSDL--GTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG 442 (606)
T ss_dssp EEECCHHHH--CCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTT
T ss_pred Ccchhhhhc--cCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchh
Confidence 42 33333 334577788877777666532 457777777777777665433 2356777777777777755555
Q ss_pred cccccCCCcceEecccccccc-cchhhhhccCCCCEEEcCCCcCCCCCchhh--hccccEEECCCCcccCCchhhhhcCC
Q 045270 337 DTGNFMPRLRYFCAANNGLTG-IIPASLCNATTLSLLDLSNNSFMKKSDAFL--NCLLQTLDLNGNRLQGTVPKSIANCK 413 (440)
Q Consensus 337 ~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~l~ 413 (440)
.+.. +++|++|++++|.+++ ..|..+..+++|++|++++|++++.+...+ ..+|++|++++|++++..|..+.+++
T Consensus 443 ~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 521 (606)
T 3vq2_A 443 IFLG-LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLY 521 (606)
T ss_dssp TTTT-CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCT
T ss_pred hhcC-CCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCC
Confidence 4444 7777777777777765 356667777777777777777776633222 34577777777777777777777777
Q ss_pred CCcEEECCCCcccccCcccccCCC
Q 045270 414 MLEVLNLGNNQFSDKFPCWLYDAP 437 (440)
Q Consensus 414 ~L~~L~l~~n~~~~~~~~~l~~~~ 437 (440)
+|+.|++++|+++ .+|..+..++
T Consensus 522 ~L~~L~l~~N~l~-~~p~~~~~l~ 544 (606)
T 3vq2_A 522 SLSTLDCSFNRIE-TSKGILQHFP 544 (606)
T ss_dssp TCCEEECTTSCCC-CEESCGGGSC
T ss_pred cCCEEECCCCcCc-ccCHhHhhhc
Confidence 7777777777776 4555566554
No 12
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.4e-40 Score=336.61 Aligned_cols=133 Identities=20% Similarity=0.140 Sum_probs=100.0
Q ss_pred CcceeeeeeCCCCceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCC
Q 045270 9 CCDWSGVDCDEAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHI 88 (440)
Q Consensus 9 ~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~ 88 (440)
.+.|..|.. -..++++|||++|.+++..+. .|..+++|++|++++|.....-.|.+|.++++|++|++++|.+.+..
T Consensus 13 ~~~L~~vP~-lp~~l~~LdLs~N~i~~i~~~--~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~ 89 (844)
T 3j0a_A 13 FCNLTQVPQ-VLNTTERLLLSFNYIRTVTAS--SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH 89 (844)
T ss_dssp CCCSSCCCS-SCTTCCEEEEESCCCCEECSS--SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC
T ss_pred CCCCCCCCC-CCCCcCEEECCCCcCCccChh--HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC
Confidence 345666666 447899999999999877666 78899999999998886544313677888888999998888888777
Q ss_pred cccccccccCceecCCCCcccCccc-hhhhcccccceEEEecCCccCCCCC-cccccc
Q 045270 89 PLQISSMARLVALDFSFNQFSGSIS-SIRWEHLLNLVYAVLSDNSLNGSIP-RSMFEF 144 (440)
Q Consensus 89 ~~~~~~l~~L~~L~L~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~-~~~~~l 144 (440)
|.+|.++++|++|+|++|.+.+.++ ...+..+++|++|++++|.+.+..+ ..+.++
T Consensus 90 p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L 147 (844)
T 3j0a_A 90 PDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKL 147 (844)
T ss_dssp TTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTC
T ss_pred HhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhC
Confidence 8888888888888888888875443 3347778888888888887765433 344444
No 13
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=1.1e-38 Score=320.26 Aligned_cols=404 Identities=22% Similarity=0.182 Sum_probs=227.1
Q ss_pred ceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCcee
Q 045270 22 HVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVAL 101 (440)
Q Consensus 22 ~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 101 (440)
++++|++++|.+++..+. .|..+++|++|++++|.+... .+..|+++++|++|++++|.+.+..|..+.++++|++|
T Consensus 74 ~L~~L~L~~n~l~~l~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 150 (680)
T 1ziw_A 74 MLKVLNLQHNELSQLSDK--TFAFCTNLTELHLMSNSIQKI-KNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQEL 150 (680)
T ss_dssp TCCEEECCSSCCCCCCTT--TTTTCTTCSEEECCSSCCCCC-CSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEE
T ss_pred CcCEEECCCCccCccChh--hhccCCCCCEEECCCCccCcc-ChhHccccCCCCEEECCCCcccccCchhhcccccCCEE
Confidence 445555555544432222 355555555555555555332 33445555566666665555555555555556666666
Q ss_pred cCCCCcccCccchhhh--cccccceEEEecCCccCCCCCcccccccccc-------------------------------
Q 045270 102 DFSFNQFSGSISSIRW--EHLLNLVYAVLSDNSLNGSIPRSMFEFPIFS------------------------------- 148 (440)
Q Consensus 102 ~L~~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~------------------------------- 148 (440)
++++|.+.+..+. .+ ..+++|++|++++|.+.+..|..+..++.+.
T Consensus 151 ~L~~n~l~~~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L 229 (680)
T 1ziw_A 151 LLSNNKIQALKSE-ELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL 229 (680)
T ss_dssp ECCSSCCCCBCHH-HHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEEC
T ss_pred EccCCcccccCHH-HhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEc
Confidence 6666655533322 22 2346677777777766655554443322210
Q ss_pred ------------ccCc--ccccEEEcCCCccCCccccccccccCccEEeccccccccccc--------------------
Q 045270 149 ------------NASS--SALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQ-------------------- 194 (440)
Q Consensus 149 ------------~~~~--~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-------------------- 194 (440)
+..+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+
T Consensus 230 ~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~ 309 (680)
T 1ziw_A 230 SNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTK 309 (680)
T ss_dssp TTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCC
T ss_pred cCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhh
Confidence 0112 238888888887775556667777888888887776652211
Q ss_pred ------------hhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCC-------------------------
Q 045270 195 ------------LDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASC------------------------- 237 (440)
Q Consensus 195 ------------~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~------------------------- 237 (440)
...+..+++|+.|++++|.+....... +..+++|+.|++++|
T Consensus 310 ~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L 388 (680)
T 1ziw_A 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNM-FTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNL 388 (680)
T ss_dssp C------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTT-TTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEEC
T ss_pred cccccccccccChhhcccCCCCCEEECCCCccCCCChhH-hccccCCcEEECCCCchhhhhcchhhhcccccCcCceEEC
Confidence 113455667777777777766544333 445555555555544
Q ss_pred ---CCCCCCC--CcccCcccEEeccCcccccccCc-ccccccccceeEEEccCcccccccCC--ccCCceeEEEcCCccc
Q 045270 238 ---KLREIPN--LKNQSQLQYLYLSENQISREIPN-WIWRVSVVGLHCLNLSHNLLVGFQGP--YSIPALRFIDLSSHQL 309 (440)
Q Consensus 238 ---~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~ 309 (440)
.++.++. +..+++|+.|++++|.+.+.++. .+. ..++|++|++++|.+....+. ..+++|+.|++++|.+
T Consensus 389 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l 466 (680)
T 1ziw_A 389 TKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWR--GLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVAL 466 (680)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGT--TCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCC
T ss_pred CCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCccccc--CcccccEEecCCCCcceeChhhhhcCcccccchhccccc
Confidence 4443322 56667777777777776654442 332 234477777777766554332 3356666666666554
Q ss_pred cC--cc---cCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccch--------hhhhccCCCCEEEcCC
Q 045270 310 RG--NI---HQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIP--------ASLCNATTLSLLDLSN 376 (440)
Q Consensus 310 ~~--~~---~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--------~~~~~~~~L~~L~l~~ 376 (440)
.. .. ...+++|+.|++++|.+. .++...+..+++|++|++++|.+++..+ ..+..+++|++|++++
T Consensus 467 ~~~~~~p~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~ 545 (680)
T 1ziw_A 467 KNVDSSPSPFQPLRNLTILDLSNNNIA-NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 545 (680)
T ss_dssp BCTTCSSCTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCS
T ss_pred cccccCCcccccCCCCCEEECCCCCCC-cCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCC
Confidence 31 11 222456777777777766 4444444446677777777776654321 1255666677777776
Q ss_pred CcCCCCCchhh--hccccEEECCCCcccCCchhhhhcCCCCcEEECCCCcccccCcccc
Q 045270 377 NSFMKKSDAFL--NCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWL 433 (440)
Q Consensus 377 n~i~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l 433 (440)
|++..++...+ ..+|+.|++++|.++...+..|.++++|+.|++++|.+++..|..+
T Consensus 546 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~ 604 (680)
T 1ziw_A 546 NGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVF 604 (680)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHH
T ss_pred CCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHh
Confidence 66666654322 3446666666666665555556666666666666666666555443
No 14
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.2e-39 Score=322.78 Aligned_cols=370 Identities=22% Similarity=0.275 Sum_probs=315.2
Q ss_pred CCCCeEEecCCccCCCccccchhcCCCCcEEEcccCcc------------------------------------------
Q 045270 47 HYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGF------------------------------------------ 84 (440)
Q Consensus 47 ~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~------------------------------------------ 84 (440)
.+++.|+++++.+.+. +|.+++.+++|++|++++|.+
T Consensus 81 ~~V~~L~L~~~~l~g~-lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 81 GRVTGLSLEGFGASGR-VPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CCEEEEECTTSCCEEE-ECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEEecCcccCCc-CChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence 5889999999999776 899999999999999998843
Q ss_pred ------------------------------------ccCCcccccccccCceecCCCCcccCc-----------------
Q 045270 85 ------------------------------------AGHIPLQISSMARLVALDFSFNQFSGS----------------- 111 (440)
Q Consensus 85 ------------------------------------~~~~~~~~~~l~~L~~L~L~~~~~~~~----------------- 111 (440)
++ +|.+++++++|++|+|++|.+++.
T Consensus 160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhccc
Confidence 33 788899999999999999999973
Q ss_pred cchhhhc--ccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCc-cCC-ccccccccc------cCccE
Q 045270 112 ISSIRWE--HLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNR-LRG-SIPVSVFEL------KKLTS 181 (440)
Q Consensus 112 ~~~~~~~--~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~------~~L~~ 181 (440)
++. .++ .+++|++|++++|.+.+.+|..++.+ ++|++|++++|. +.+ .+|..++.+ ++|++
T Consensus 239 ip~-~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l--------~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~ 309 (636)
T 4eco_A 239 KTE-DLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL--------PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQI 309 (636)
T ss_dssp TTS-CCCGGGCTTCCEEEEECCTTCSSCCTTTTTC--------SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCE
T ss_pred Cch-hhhhcccCCCCEEEecCCcCCccChHHHhcC--------CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCE
Confidence 444 356 99999999999999998999888766 699999999998 886 688888776 99999
Q ss_pred Eeccccccccccch-hhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCC-CcccCc-ccEEeccC
Q 045270 182 LLLSSNNLHGTVQL-DKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQ-LQYLYLSE 258 (440)
Q Consensus 182 L~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~-L~~L~l~~ 258 (440)
|++++|.+. .++. ..+..+++|+.|++++|.+.+..+ .+..+++|+.|++++|.++.+|. +..+++ |+.|++++
T Consensus 310 L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~ 386 (636)
T 4eco_A 310 IYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAH 386 (636)
T ss_dssp EECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCS
T ss_pred EECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccC
Confidence 999999998 6664 368999999999999999984444 47788999999999999998887 888999 99999999
Q ss_pred cccccccCcccccccccceeEEEccCcccccccCC--c-------cCCceeEEEcCCccccCcccC---CCCCccEEEcc
Q 045270 259 NQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGP--Y-------SIPALRFIDLSSHQLRGNIHQ---LPNNLIYIDFS 326 (440)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~-------~~~~L~~L~l~~~~~~~~~~~---~~~~L~~L~L~ 326 (440)
|.+. .+|..+.....++|+.|++++|.+....+. . .+++|++|++++|.+...... .+++|++|+++
T Consensus 387 N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls 465 (636)
T 4eco_A 387 NKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLM 465 (636)
T ss_dssp SCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECC
T ss_pred CcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECC
Confidence 9998 678777665556799999999998765432 2 567999999999998854432 36799999999
Q ss_pred CCcccccCCccccccCC-------CcceEecccccccccchhhhh--ccCCCCEEEcCCCcCCCCCchhh-hccccEEEC
Q 045270 327 NNNFTSSIPADTGNFMP-------RLRYFCAANNGLTGIIPASLC--NATTLSLLDLSNNSFMKKSDAFL-NCLLQTLDL 396 (440)
Q Consensus 327 ~~~~~~~~~~~~~~~~~-------~L~~L~l~~~~l~~~~~~~~~--~~~~L~~L~l~~n~i~~~~~~~~-~~~L~~L~l 396 (440)
+|.+. .+|...+...+ +|+.|++++|.++ .+|..+. .+++|++|++++|+++.+|..+. ..+|+.|++
T Consensus 466 ~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L 543 (636)
T 4eco_A 466 GNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGI 543 (636)
T ss_dssp SSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEEC
T ss_pred CCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEEC
Confidence 99998 88887765343 9999999999999 5677776 89999999999999999876655 456999999
Q ss_pred ------CCCcccCCchhhhhcCCCCcEEECCCCcccccCccccc
Q 045270 397 ------NGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLY 434 (440)
Q Consensus 397 ------~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~ 434 (440)
++|.+.+..|..+.++++|+.|++++|.+ +.+|..+.
T Consensus 544 s~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~ 586 (636)
T 4eco_A 544 RNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT 586 (636)
T ss_dssp CSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred CCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh
Confidence 56788889999999999999999999999 67777655
No 15
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=7.6e-39 Score=322.26 Aligned_cols=371 Identities=22% Similarity=0.267 Sum_probs=311.5
Q ss_pred CCCCeEEecCCccCCCccccchhcCCCCcEEEc-ccCccccC--------------------------------------
Q 045270 47 HYLRSLNLARTSFNGTQIPSKLANISSLTYLNL-SDAGFAGH-------------------------------------- 87 (440)
Q Consensus 47 ~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l-~~~~~~~~-------------------------------------- 87 (440)
.+++.|+++++.+.+. +|..++++++|++|+| ++|.+.+.
T Consensus 323 ~~V~~L~Ls~~~L~G~-ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGR-VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTCCEEE-ECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCCCCCc-CchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 5799999999999877 8999999999999999 66643222
Q ss_pred --------------------------------------CcccccccccCceecCCCCcccC-----------------cc
Q 045270 88 --------------------------------------IPLQISSMARLVALDFSFNQFSG-----------------SI 112 (440)
Q Consensus 88 --------------------------------------~~~~~~~l~~L~~L~L~~~~~~~-----------------~~ 112 (440)
+|..+.++++|++|+|++|.+++ .+
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 78889999999999999999997 14
Q ss_pred chhh-hcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCc-cCC-cccccccccc-------CccEE
Q 045270 113 SSIR-WEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNR-LRG-SIPVSVFELK-------KLTSL 182 (440)
Q Consensus 113 ~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~-~~~-~~~~~~~~~~-------~L~~L 182 (440)
|... +..+++|++|++++|.+.+.+|..+..+ ++|++|++++|. +.+ .+|..+..++ +|+.|
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L--------~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L 553 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDL--------PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF 553 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGC--------SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEE
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCC--------CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEE
Confidence 4421 3499999999999999988999888766 699999999998 876 6787776665 99999
Q ss_pred eccccccccccch-hhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCC-CcccCc-ccEEeccCc
Q 045270 183 LLSSNNLHGTVQL-DKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQ-LQYLYLSEN 259 (440)
Q Consensus 183 ~l~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~-L~~L~l~~~ 259 (440)
++++|.+. .++. ..+..+++|+.|++++|.+...+ .+..+++|+.|++++|.++.+|. +..+++ |+.|++++|
T Consensus 554 ~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~~lp---~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N 629 (876)
T 4ecn_A 554 YMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVRHLE---AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHN 629 (876)
T ss_dssp ECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCCBCC---CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSS
T ss_pred EeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcccch---hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCC
Confidence 99999998 6664 36899999999999999998333 47889999999999999998887 888998 999999999
Q ss_pred ccccccCcccccccccceeEEEccCcccccccCC-------ccCCceeEEEcCCccccCcccC---CCCCccEEEccCCc
Q 045270 260 QISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGP-------YSIPALRFIDLSSHQLRGNIHQ---LPNNLIYIDFSNNN 329 (440)
Q Consensus 260 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-------~~~~~L~~L~l~~~~~~~~~~~---~~~~L~~L~L~~~~ 329 (440)
.+. .+|..+.....++|+.|++++|.+....+. ..+++|+.|++++|.+...... .+++|+.|+|++|.
T Consensus 630 ~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~ 708 (876)
T 4ecn_A 630 KLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708 (876)
T ss_dssp CCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCC
T ss_pred CCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCc
Confidence 987 678777666666799999999998765332 2356999999999998854432 36799999999999
Q ss_pred ccccCCccccccC-------CCcceEecccccccccchhhhh--ccCCCCEEEcCCCcCCCCCchhh-hccccEEECCC-
Q 045270 330 FTSSIPADTGNFM-------PRLRYFCAANNGLTGIIPASLC--NATTLSLLDLSNNSFMKKSDAFL-NCLLQTLDLNG- 398 (440)
Q Consensus 330 ~~~~~~~~~~~~~-------~~L~~L~l~~~~l~~~~~~~~~--~~~~L~~L~l~~n~i~~~~~~~~-~~~L~~L~l~~- 398 (440)
+. .+|...+... ++|+.|++++|.++ .+|..+. .+++|+.|++++|.+..+|..+. .++|+.|++++
T Consensus 709 L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N 786 (876)
T 4ecn_A 709 MT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQ 786 (876)
T ss_dssp CS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCC
T ss_pred CC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCC
Confidence 98 8888776533 38999999999999 5677776 89999999999999999876555 45699999976
Q ss_pred -----CcccCCchhhhhcCCCCcEEECCCCcccccCccccc
Q 045270 399 -----NRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLY 434 (440)
Q Consensus 399 -----n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~ 434 (440)
|.+.+.+|..+.++++|+.|++++|.+ +.+|..+.
T Consensus 787 ~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~ 826 (876)
T 4ecn_A 787 RDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT 826 (876)
T ss_dssp BCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred CCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc
Confidence 788889999999999999999999999 77887655
No 16
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=8.6e-39 Score=327.05 Aligned_cols=392 Identities=23% Similarity=0.234 Sum_probs=239.3
Q ss_pred CceEEEeeccceeeccc-CCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCccc--cccccc
Q 045270 21 GHVIGLDLSTESISGGI-ENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQ--ISSMAR 97 (440)
Q Consensus 21 ~~l~~L~l~~~~~~~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~--~~~l~~ 97 (440)
.++++|++++|...+.+ +. .|.++++|++|++++|.+... .|..|+++++|++|++++|.+.+..|.. +.++++
T Consensus 48 ~~L~~LdLs~n~~~~~i~~~--~f~~L~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~ 124 (844)
T 3j0a_A 48 EQLQLLELGSQYTPLTIDKE--AFRNLPNLRILDLGSSKIYFL-HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKA 124 (844)
T ss_dssp CSCSEEEECTTCCCCEECTT--TTSSCTTCCEEECTTCCCCEE-CTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSS
T ss_pred ccCeEEeCCCCCCccccCHH--HhcCCCCCCEEECCCCcCccc-CHhHccCCcccCEeeCcCCCCCcccccCccccccCC
Confidence 67788888887555444 34 678888888888888877654 5777888888888888888777655544 777888
Q ss_pred CceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCcccccc--ccccc----------------cCcc------
Q 045270 98 LVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEF--PIFSN----------------ASSS------ 153 (440)
Q Consensus 98 L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l--~~l~~----------------~~~~------ 153 (440)
|++|++++|.+.+..+...++.+++|++|++++|.+.+..+..+..+ +.|.. ..+.
T Consensus 125 L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~ 204 (844)
T 3j0a_A 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM 204 (844)
T ss_dssp CCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTC
T ss_pred CCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccC
Confidence 88888888877755554467778888888888877765555554433 11110 0111
Q ss_pred cccEEEcCCCc--------------------------------------------------------------cCCcccc
Q 045270 154 ALDTLDLSGNR--------------------------------------------------------------LRGSIPV 171 (440)
Q Consensus 154 ~L~~L~l~~~~--------------------------------------------------------------~~~~~~~ 171 (440)
.|++|++++|. +....+.
T Consensus 205 ~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~ 284 (844)
T 3j0a_A 205 VLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSR 284 (844)
T ss_dssp CBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSC
T ss_pred ceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChh
Confidence 15555555553 3333333
Q ss_pred ccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCC--CcccC
Q 045270 172 SVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQS 249 (440)
Q Consensus 172 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~ 249 (440)
.+..+++|+.|++++|.+. ......+..+++|+.|++++|.++...+.. +..+++|+.|++++|.+..++. +..++
T Consensus 285 ~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~i~~~~~~~~~~l~ 362 (844)
T 3j0a_A 285 VFETLKDLKVLNLAYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSN-FYGLPKVAYIDLQKNHIAIIQDQTFKFLE 362 (844)
T ss_dssp CSSSCCCCCEEEEESCCCC-EECTTTTTTCSSCCEEEEESCCCSCCCSCS-CSSCTTCCEEECCSCCCCCCCSSCSCSCC
T ss_pred hhhcCCCCCEEECCCCcCC-CCChHHhcCCCCCCEEECCCCCCCccCHHH-hcCCCCCCEEECCCCCCCccChhhhcCCC
Confidence 3444444555555544444 222333444555555555555544333322 4444555555555555544433 44455
Q ss_pred cccEEeccCcccccccCcccccccccceeEEEccCcccc--------------------cccCC---ccCCceeEEEcCC
Q 045270 250 QLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLV--------------------GFQGP---YSIPALRFIDLSS 306 (440)
Q Consensus 250 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--------------------~~~~~---~~~~~L~~L~l~~ 306 (440)
+|+.|++++|.+.+. +. .++|+.+.+++|.+. ..... ..+++|++|++++
T Consensus 363 ~L~~L~Ls~N~l~~i-~~------~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~ 435 (844)
T 3j0a_A 363 KLQTLDLRDNALTTI-HF------IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQ 435 (844)
T ss_dssp CCCEEEEETCCSCCC-SS------CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEES
T ss_pred CCCEEECCCCCCCcc-cC------CCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCC
Confidence 555555555544321 10 112333333333222 22111 2466777777777
Q ss_pred ccccCcc----cCCCCCccEEEccCCcccccC----CccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCc
Q 045270 307 HQLRGNI----HQLPNNLIYIDFSNNNFTSSI----PADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNS 378 (440)
Q Consensus 307 ~~~~~~~----~~~~~~L~~L~L~~~~~~~~~----~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~ 378 (440)
|++.+.. ...+++|+.|++++|.+.... ....+..+++|+.|++++|.+++..+..|..+++|++|++++|+
T Consensus 436 N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 515 (844)
T 3j0a_A 436 NRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNR 515 (844)
T ss_dssp CCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCC
T ss_pred CcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCC
Confidence 7665322 223567777777777765221 11233447888888899888888888888888999999999998
Q ss_pred CCCCCchhhhccccEEECCCCcccCCchhhhhcCCCCcEEECCCCcccc
Q 045270 379 FMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSD 427 (440)
Q Consensus 379 i~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 427 (440)
++.++...+..+|+.|++++|++++..|..| ++|+.|++++|++..
T Consensus 516 l~~l~~~~~~~~L~~L~Ls~N~l~~~~~~~~---~~L~~l~l~~Np~~C 561 (844)
T 3j0a_A 516 LTVLSHNDLPANLEILDISRNQLLAPNPDVF---VSLSVLDITHNKFIC 561 (844)
T ss_dssp CSSCCCCCCCSCCCEEEEEEECCCCCCSCCC---SSCCEEEEEEECCCC
T ss_pred CCccChhhhhccccEEECCCCcCCCCChhHh---CCcCEEEecCCCccc
Confidence 8888766666789999999999888777655 478888898888764
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.1e-38 Score=311.97 Aligned_cols=397 Identities=21% Similarity=0.198 Sum_probs=313.7
Q ss_pred CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCce
Q 045270 21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVA 100 (440)
Q Consensus 21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 100 (440)
+++++|++++|.+++..+. .|..+++|++|++++|.+... .+..|.++++|++|++++|.+.+..+..++++++|++
T Consensus 52 ~~L~~L~Ls~n~i~~i~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~ 128 (570)
T 2z63_A 52 PELQVLDLSRCEIQTIEDG--AYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 128 (570)
T ss_dssp SSCCEEECTTCCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCE
T ss_pred CCceEEECCCCcCCccCcc--cccCchhCCEEeCcCCcCCcc-CHhhhcCccccccccccccccccCCCccccccccccE
Confidence 6899999999999876665 799999999999999998665 5678999999999999999988555557899999999
Q ss_pred ecCCCCcccCccchhhhcccccceEEEecCCccCCCCCcccccccccc----c---------------cCcccccEEEcC
Q 045270 101 LDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFS----N---------------ASSSALDTLDLS 161 (440)
Q Consensus 101 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~----~---------------~~~~~L~~L~l~ 161 (440)
|++++|.+.+......++.+++|++|++++|.+.+..+..+..+..+. . ....+|+.|+++
T Consensus 129 L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~ 208 (570)
T 2z63_A 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLR 208 (570)
T ss_dssp EECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEE
T ss_pred EecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecc
Confidence 999999987532233588999999999999998866666665554330 0 011135555555
Q ss_pred CC----------------------------------------------------------ccCCccccccccccCccEEe
Q 045270 162 GN----------------------------------------------------------RLRGSIPVSVFELKKLTSLL 183 (440)
Q Consensus 162 ~~----------------------------------------------------------~~~~~~~~~~~~~~~L~~L~ 183 (440)
+| .+.+..+..+..+++|++|+
T Consensus 209 ~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~ 288 (570)
T 2z63_A 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFS 288 (570)
T ss_dssp SCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEE
T ss_pred cccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEE
Confidence 43 11122344566678999999
Q ss_pred ccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEeccCccccc
Q 045270 184 LSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISR 263 (440)
Q Consensus 184 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~ 263 (440)
++++.+. .++. .+..+ +|+.|++++|.+...+. ..+++|+.|++.+|.+........+++|+.|++++|.+.+
T Consensus 289 l~~~~l~-~l~~-~~~~~-~L~~L~l~~n~~~~l~~----~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~ 361 (570)
T 2z63_A 289 LVSVTIE-RVKD-FSYNF-GWQHLELVNCKFGQFPT----LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSF 361 (570)
T ss_dssp EESCEEC-SCCB-CCSCC-CCSEEEEESCBCSSCCB----CBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBE
T ss_pred ecCccch-hhhh-hhccC-CccEEeeccCcccccCc----ccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCc
Confidence 9999886 4443 35566 99999999999874432 4678999999999988765545789999999999999875
Q ss_pred cc--CcccccccccceeEEEccCcccccccC-CccCCceeEEEcCCccccCcc----cCCCCCccEEEccCCcccccCCc
Q 045270 264 EI--PNWIWRVSVVGLHCLNLSHNLLVGFQG-PYSIPALRFIDLSSHQLRGNI----HQLPNNLIYIDFSNNNFTSSIPA 336 (440)
Q Consensus 264 ~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~----~~~~~~L~~L~L~~~~~~~~~~~ 336 (440)
.. +..+. ..++|+.|++++|.+...++ ...+++|++|++++|.+.+.. ...+++|++|++++|.+.+..+.
T Consensus 362 ~~~~~~~~~--~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 439 (570)
T 2z63_A 362 KGCCSQSDF--GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439 (570)
T ss_dssp EEEEEHHHH--TCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTT
T ss_pred ccccccccc--ccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchh
Confidence 43 33343 45569999999999887765 356899999999999887653 33478999999999999866665
Q ss_pred cccccCCCcceEeccccccc-ccchhhhhccCCCCEEEcCCCcCCCC-Cchhh-hccccEEECCCCcccCCchhhhhcCC
Q 045270 337 DTGNFMPRLRYFCAANNGLT-GIIPASLCNATTLSLLDLSNNSFMKK-SDAFL-NCLLQTLDLNGNRLQGTVPKSIANCK 413 (440)
Q Consensus 337 ~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~l~ 413 (440)
.+.. +++|++|++++|.+. +..|..+..+++|++|++++|+++++ +..+. .++|+.|++++|++++..+..+.+++
T Consensus 440 ~~~~-l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 518 (570)
T 2z63_A 440 IFNG-LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLT 518 (570)
T ss_dssp TTTT-CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred hhhc-CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhccc
Confidence 5554 999999999999997 46788999999999999999999988 44433 46799999999999988888899999
Q ss_pred CCcEEECCCCcccccCc
Q 045270 414 MLEVLNLGNNQFSDKFP 430 (440)
Q Consensus 414 ~L~~L~l~~n~~~~~~~ 430 (440)
+|+.|++++|++++..|
T Consensus 519 ~L~~L~l~~N~~~~~~~ 535 (570)
T 2z63_A 519 SLQKIWLHTNPWDCSCP 535 (570)
T ss_dssp TCCEEECCSSCBCCCTT
T ss_pred CCcEEEecCCcccCCCc
Confidence 99999999999987765
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=4.6e-39 Score=312.84 Aligned_cols=382 Identities=19% Similarity=0.185 Sum_probs=237.8
Q ss_pred CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCce
Q 045270 21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVA 100 (440)
Q Consensus 21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 100 (440)
+++++|++++|.+++..+. .|..+++|++|++++|.+... .|..|+++++|++|++++|.+. .+|.. .+++|++
T Consensus 21 ~~L~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~ 94 (520)
T 2z7x_B 21 QKTTILNISQNYISELWTS--DILSLSKLRILIISHNRIQYL-DISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKH 94 (520)
T ss_dssp TTCSEEECCSSCCCCCCHH--HHTTCTTCCEEECCSSCCCEE-EGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSE
T ss_pred ccccEEECCCCcccccChh--hccccccccEEecCCCccCCc-ChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccE
Confidence 6788888888888765555 788888888888888888655 5778888888888888888887 56655 7888888
Q ss_pred ecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccc--cEEEcCCCcc--CCcccccccc-
Q 045270 101 LDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSAL--DTLDLSGNRL--RGSIPVSVFE- 175 (440)
Q Consensus 101 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L--~~L~l~~~~~--~~~~~~~~~~- 175 (440)
|++++|.+.+......++.+++|++|++++|.+.+ ..+..+ ++| ++|++++|.+ .+..|..+..
T Consensus 95 L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l--------~~L~L~~L~l~~n~l~~~~~~~~~l~~l 163 (520)
T 2z7x_B 95 LDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPI--------AHLNISKVLLVLGETYGEKEDPEGLQDF 163 (520)
T ss_dssp EECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGG--------TTSCEEEEEEEECTTTTSSCCTTTTTTC
T ss_pred EeccCCccccccchhhhccCCcceEEEecCcccch---hhcccc--------ccceeeEEEeeccccccccccccccccc
Confidence 88888888753323357888888888888888764 223222 344 7777776665 3333333322
Q ss_pred -------------------------ccCccEEeccccc-------cccccchhhHhcCC---------------------
Q 045270 176 -------------------------LKKLTSLLLSSNN-------LHGTVQLDKILNLG--------------------- 202 (440)
Q Consensus 176 -------------------------~~~L~~L~l~~~~-------~~~~~~~~~~~~~~--------------------- 202 (440)
+++|+.+++++|. +.+.++ .+..++
T Consensus 164 ~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--~l~~l~~L~~L~l~~~~l~~~~~~~~~ 241 (520)
T 2z7x_B 164 NTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA--KLQTNPKLSNLTLNNIETTWNSFIRIL 241 (520)
T ss_dssp CEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH--GGGGCTTCCEEEEEEEEEEHHHHHHHH
T ss_pred ccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh--hhccccchhhccccccccCHHHHHHHH
Confidence 4455555555443 211111 233444
Q ss_pred ------CCcEEEcCCCcccccCCcccc----CCccccceeecCCCCCCCCCC--Cccc---CcccEEeccCcccccccCc
Q 045270 203 ------NLAKLDLSYNSLAVDESSRNY----SFSPMLELLNLASCKLREIPN--LKNQ---SQLQYLYLSENQISREIPN 267 (440)
Q Consensus 203 ------~L~~L~l~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~l~~l~~--~~~~---~~L~~L~l~~~~~~~~~~~ 267 (440)
+|+.|++++|.+.+..+...+ ..++.|+.+++.++.+ .+|. +..+ ++|+.|++++|.+.....
T Consensus 242 ~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~- 319 (520)
T 2z7x_B 242 QLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC- 319 (520)
T ss_dssp HHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC-
T ss_pred HHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccc-
Confidence 444455554444322222211 4445555555555554 3331 1111 345566666555432210
Q ss_pred ccccccccceeEEEccCcccccccC--CccCCceeEEEcCCccccC--c---ccCCCCCccEEEccCCcccccCCccccc
Q 045270 268 WIWRVSVVGLHCLNLSHNLLVGFQG--PYSIPALRFIDLSSHQLRG--N---IHQLPNNLIYIDFSNNNFTSSIPADTGN 340 (440)
Q Consensus 268 ~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~--~---~~~~~~~L~~L~L~~~~~~~~~~~~~~~ 340 (440)
. ...++|++|++++|.+....+ ...+++|++|++++|++.+ . ....+++|++|++++|.+.+.+|...+.
T Consensus 320 -~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~ 396 (520)
T 2z7x_B 320 -P--SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCS 396 (520)
T ss_dssp -C--SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCC
T ss_pred -h--hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhc
Confidence 0 233457777777777766322 2457777777777777764 1 1334567777777777777546665555
Q ss_pred cCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchhh-hccccEEECCCCcccCCchhhhhcCCCCcEEE
Q 045270 341 FMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFL-NCLLQTLDLNGNRLQGTVPKSIANCKMLEVLN 419 (440)
Q Consensus 341 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~ 419 (440)
.+++|++|++++|.+++..+..+. ++|++|++++|+++.+|...+ .++|++|++++|+++...+..+..+++|+.|+
T Consensus 397 ~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 474 (520)
T 2z7x_B 397 WTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIW 474 (520)
T ss_dssp CCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEE
Confidence 577777777777777655554443 677777777777777765443 44577777777777744444477777777777
Q ss_pred CCCCccccc
Q 045270 420 LGNNQFSDK 428 (440)
Q Consensus 420 l~~n~~~~~ 428 (440)
+++|+++..
T Consensus 475 l~~N~~~c~ 483 (520)
T 2z7x_B 475 LHTNPWDCS 483 (520)
T ss_dssp CCSSCBCCC
T ss_pred CcCCCCccc
Confidence 777777643
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.4e-36 Score=290.49 Aligned_cols=349 Identities=19% Similarity=0.247 Sum_probs=220.7
Q ss_pred CCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCC-cccccccccCceecCCCCcccCccchhhhcccccceE
Q 045270 47 HYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHI-PLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVY 125 (440)
Q Consensus 47 ~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~ 125 (440)
++|++|++++|.+... .+..++++++|++|++++|.+.+.+ +..|.++++|++|++++|.+.+..+ ..+..+++|++
T Consensus 30 ~~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~ 107 (455)
T 3v47_A 30 AHVNYVDLSLNSIAEL-NETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLET-GAFNGLANLEV 107 (455)
T ss_dssp TTCCEEECCSSCCCEE-CTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECT-TTTTTCTTCCE
T ss_pred CccCEEEecCCccCcC-ChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccCh-hhccCcccCCE
Confidence 5677777777766544 4566677777777777777665333 4456667777777777776653322 24566666666
Q ss_pred EEecCCccCCCCCcc--ccccccccccCcccccEEEcCCCccCCccccc-cccccCccEEeccccccccccchhhHhcCC
Q 045270 126 AVLSDNSLNGSIPRS--MFEFPIFSNASSSALDTLDLSGNRLRGSIPVS-VFELKKLTSLLLSSNNLHGTVQLDKILNLG 202 (440)
Q Consensus 126 L~l~~~~~~~~~~~~--~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 202 (440)
|++++|.+++..+.. +. .+++|++|++++|.+.+..|.. +..+++|++|++++|.+.+ .....+..+
T Consensus 108 L~L~~n~l~~~~~~~~~~~--------~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~l~~l- 177 (455)
T 3v47_A 108 LTLTQCNLDGAVLSGNFFK--------PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS-ICEEDLLNF- 177 (455)
T ss_dssp EECTTSCCBTHHHHSSTTT--------TCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC-CCTTTSGGG-
T ss_pred EeCCCCCCCccccCccccc--------CcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc-cChhhhhcc-
Confidence 666666665433322 32 2245666666666655443433 4555556666655555542 222222222
Q ss_pred CCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCC----------CcccCcccEEeccCcccccccCcccccc
Q 045270 203 NLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN----------LKNQSQLQYLYLSENQISREIPNWIWRV 272 (440)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~----------~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 272 (440)
....++.++++++.+..++. +..+++|+.|++++|.+.+..+..+...
T Consensus 178 ----------------------~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~ 235 (455)
T 3v47_A 178 ----------------------QGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDA 235 (455)
T ss_dssp ----------------------TTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHH
T ss_pred ----------------------ccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhcc
Confidence 01344444444444443332 1234556666666666555444433221
Q ss_pred -cccceeEEEccCcccccccC----------C----ccCCceeEEEcCCccccCcccC---CCCCccEEEccCCcccccC
Q 045270 273 -SVVGLHCLNLSHNLLVGFQG----------P----YSIPALRFIDLSSHQLRGNIHQ---LPNNLIYIDFSNNNFTSSI 334 (440)
Q Consensus 273 -~~~~L~~L~l~~~~~~~~~~----------~----~~~~~L~~L~l~~~~~~~~~~~---~~~~L~~L~L~~~~~~~~~ 334 (440)
...+++.+++++|....... . ...++|+++++++|.+.+..+. .+++|++|++++|.+.+..
T Consensus 236 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~ 315 (455)
T 3v47_A 236 IAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKID 315 (455)
T ss_dssp TTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred ccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccC
Confidence 12346666666553322110 0 1246888888888888765443 3578999999999988555
Q ss_pred CccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCc-hhh-hccccEEECCCCcccCCchhhhhcC
Q 045270 335 PADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSD-AFL-NCLLQTLDLNGNRLQGTVPKSIANC 412 (440)
Q Consensus 335 ~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~-~~~L~~L~l~~n~~~~~~~~~~~~l 412 (440)
+..+.. +++|++|++++|.+++..+..+..+++|++|++++|.+..++. .+. .++|++|++++|++++..+..++.+
T Consensus 316 ~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 394 (455)
T 3v47_A 316 DNAFWG-LTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL 394 (455)
T ss_dssp TTTTTT-CTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred hhHhcC-cccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccC
Confidence 555544 8999999999999988888889999999999999999988733 333 4669999999999998777788899
Q ss_pred CCCcEEECCCCcccccCc
Q 045270 413 KMLEVLNLGNNQFSDKFP 430 (440)
Q Consensus 413 ~~L~~L~l~~n~~~~~~~ 430 (440)
++|+.|++++|++++..|
T Consensus 395 ~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 395 TSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTCCEEECCSSCBCCCTT
T ss_pred CcccEEEccCCCcccCCC
Confidence 999999999999988776
No 20
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=7.7e-37 Score=299.31 Aligned_cols=399 Identities=20% Similarity=0.208 Sum_probs=261.8
Q ss_pred eeCCCCceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCccccccc
Q 045270 16 DCDEAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSM 95 (440)
Q Consensus 16 ~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l 95 (440)
.|...+ +.|.+++.++. +|. .+ .++|++|++++|.+... .+..|.++++|++|++++|.+.+..|.+|.++
T Consensus 3 ~C~~~~---~c~~~~~~l~~-ip~--~~--~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l 73 (549)
T 2z81_A 3 SCDASG---VCDGRSRSFTS-IPS--GL--TAAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINTIEGDAFYSL 73 (549)
T ss_dssp EECTTS---EEECTTSCCSS-CCS--CC--CTTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCCEECTTTTTTC
T ss_pred cCCCCc---eEECCCCcccc-ccc--cC--CCCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcCccChhhcccc
Confidence 465433 26888888874 444 33 37999999999998765 67789999999999999999998888899999
Q ss_pred ccCceecCCCCcccCccchhhhcccccceEEEecCCccCC-CCCccccccccccccCcccccEEEcCCCccCCccc-ccc
Q 045270 96 ARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNG-SIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIP-VSV 173 (440)
Q Consensus 96 ~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~-~~~ 173 (440)
++|++|++++|.+.+ .+...++.+++|++|++++|.+.+ ..|..+..+ ++|++|++++|...+.++ ..+
T Consensus 74 ~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l--------~~L~~L~L~~n~~~~~~~~~~~ 144 (549)
T 2z81_A 74 GSLEHLDLSDNHLSS-LSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL--------TNLQTLRIGNVETFSEIRRIDF 144 (549)
T ss_dssp TTCCEEECTTSCCCS-CCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTC--------TTCCEEEEEESSSCCEECTTTT
T ss_pred ccCCEEECCCCccCc-cCHHHhccCCCCcEEECCCCcccccchhhhhhcc--------CCccEEECCCCccccccCHhhh
Confidence 999999999999984 444468999999999999999975 345555444 799999999998443454 578
Q ss_pred ccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCC-----Cccc
Q 045270 174 FELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN-----LKNQ 248 (440)
Q Consensus 174 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-----~~~~ 248 (440)
..+++|++|++++|.+.+ ..+..+..+++|+.|+++++.+...... .+..+++|+.|++++|.++.++. ...+
T Consensus 145 ~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~ 222 (549)
T 2z81_A 145 AGLTSLNELEIKALSLRN-YQSQSLKSIRDIHHLTLHLSESAFLLEI-FADILSSVRYLELRDTNLARFQFSPLPVDEVS 222 (549)
T ss_dssp TTCCEEEEEEEEETTCCE-ECTTTTTTCSEEEEEEEECSBSTTHHHH-HHHSTTTBSEEEEESCBCTTCCCCCCSSCCCC
T ss_pred hcccccCeeeccCCcccc-cChhhhhccccCceEecccCcccccchh-hHhhcccccEEEccCCccccccccccchhhhh
Confidence 899999999999999974 4446688899999999999987543322 24568899999999998876421 2334
Q ss_pred CcccEEeccCcccccccCcccc----------------------------------------------------------
Q 045270 249 SQLQYLYLSENQISREIPNWIW---------------------------------------------------------- 270 (440)
Q Consensus 249 ~~L~~L~l~~~~~~~~~~~~~~---------------------------------------------------------- 270 (440)
++|+.|++++|.+.+..+..+.
T Consensus 223 ~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l 302 (549)
T 2z81_A 223 SPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDL 302 (549)
T ss_dssp CCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCC
T ss_pred hcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccc
Confidence 4455554444433211000000
Q ss_pred ---cccccceeEEEccCcccccccCCc--cCCceeEEEcCCccccCcc------cCCCCCccEEEccCCcccccCCc--c
Q 045270 271 ---RVSVVGLHCLNLSHNLLVGFQGPY--SIPALRFIDLSSHQLRGNI------HQLPNNLIYIDFSNNNFTSSIPA--D 337 (440)
Q Consensus 271 ---~~~~~~L~~L~l~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~------~~~~~~L~~L~L~~~~~~~~~~~--~ 337 (440)
.....+++++++++|.+..++... .+++|++|++++|++.+.. ...+++|++|++++|.+. .++. .
T Consensus 303 ~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~ 381 (549)
T 2z81_A 303 STVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLR-SMQKTGE 381 (549)
T ss_dssp CHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCC-CHHHHHH
T ss_pred hhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCccc-ccccchh
Confidence 000112444444444443333221 2445555555555444321 122344444444444443 1111 1
Q ss_pred ccccCCCcceEecccccccccchhhhhccC---------------------CCCEEEcCCCcCCCCCchhhhccccEEEC
Q 045270 338 TGNFMPRLRYFCAANNGLTGIIPASLCNAT---------------------TLSLLDLSNNSFMKKSDAFLNCLLQTLDL 396 (440)
Q Consensus 338 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~---------------------~L~~L~l~~n~i~~~~~~~~~~~L~~L~l 396 (440)
.+..+++|++|++++|.++ ..|..+..++ +|++|++++|++++.+. ..++|++|++
T Consensus 382 ~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~--~l~~L~~L~L 458 (549)
T 2z81_A 382 ILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSL--FLPRLQELYI 458 (549)
T ss_dssp HGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCC--CCTTCCEEEC
T ss_pred hhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcc--cCChhcEEEC
Confidence 1222444444444444444 2333344444 45555555555544431 2456889999
Q ss_pred CCCcccCCchhhhhcCCCCcEEECCCCcccccCcccccCCCCCC
Q 045270 397 NGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSLH 440 (440)
Q Consensus 397 ~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 440 (440)
++|+++ .+|. ...+++|+.|++++|++++..|..+..+++|+
T Consensus 459 s~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 500 (549)
T 2z81_A 459 SRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQ 500 (549)
T ss_dssp CSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCC
T ss_pred CCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccC
Confidence 999888 4454 46789999999999999998888888888774
No 21
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.2e-36 Score=295.85 Aligned_cols=389 Identities=19% Similarity=0.220 Sum_probs=275.1
Q ss_pred EEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecC
Q 045270 24 IGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDF 103 (440)
Q Consensus 24 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 103 (440)
+++|++++.+++ +|. .+. ++|++|++++|.+... .+..|.++++|++|++++|.+.+..|.+|.++++|++|++
T Consensus 3 ~~l~ls~n~l~~-ip~--~~~--~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 76 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPK--DLS--QKTTILNISQNYISEL-WTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDL 76 (520)
T ss_dssp CEEECTTSCCSS-CCC--SCC--TTCSEEECCSSCCCCC-CHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEEC
T ss_pred ceEecCCCCccc-ccc--ccc--ccccEEECCCCccccc-ChhhccccccccEEecCCCccCCcChHHhhcccCCCEEec
Confidence 679999999984 665 444 8999999999999765 5678999999999999999999777899999999999999
Q ss_pred CCCcccCccchhhhcccccceEEEecCCccCC-CCCccccccccccccCcccccEEEcCCCccCCccccccccccCc--c
Q 045270 104 SFNQFSGSISSIRWEHLLNLVYAVLSDNSLNG-SIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKL--T 180 (440)
Q Consensus 104 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L--~ 180 (440)
++|.++ .++.. .+++|++|++++|.+.+ .+|..++.+ ++|++|++++|.+.. ..+..+++| +
T Consensus 77 s~N~l~-~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l--------~~L~~L~L~~n~l~~---~~~~~l~~L~L~ 141 (520)
T 2z7x_B 77 SHNKLV-KISCH---PTVNLKHLDLSFNAFDALPICKEFGNM--------SQLKFLGLSTTHLEK---SSVLPIAHLNIS 141 (520)
T ss_dssp CSSCCC-EEECC---CCCCCSEEECCSSCCSSCCCCGGGGGC--------TTCCEEEEEESSCCG---GGGGGGTTSCEE
T ss_pred CCCcee-ecCcc---ccCCccEEeccCCccccccchhhhccC--------CcceEEEecCcccch---hhccccccceee
Confidence 999998 55553 89999999999999986 467777666 799999999999874 456777888 9
Q ss_pred EEecccccc--ccccchhhHhc--------------------------CCCCcEEEcCCCc-------ccccCCccccCC
Q 045270 181 SLLLSSNNL--HGTVQLDKILN--------------------------LGNLAKLDLSYNS-------LAVDESSRNYSF 225 (440)
Q Consensus 181 ~L~l~~~~~--~~~~~~~~~~~--------------------------~~~L~~L~l~~~~-------~~~~~~~~~~~~ 225 (440)
+|++++|.+ .+..+ ..+.. +++|+.+++++|. +....+ .+..
T Consensus 142 ~L~l~~n~l~~~~~~~-~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~--~l~~ 218 (520)
T 2z7x_B 142 KVLLVLGETYGEKEDP-EGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA--KLQT 218 (520)
T ss_dssp EEEEEECTTTTSSCCT-TTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH--GGGG
T ss_pred EEEeeccccccccccc-ccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh--hhcc
Confidence 999999987 42222 22333 4444444444442 110000 0111
Q ss_pred cc---------------------------ccceeecCCCCCC-CCCC-C-----cccCcccEEeccCcccccccC-cccc
Q 045270 226 SP---------------------------MLELLNLASCKLR-EIPN-L-----KNQSQLQYLYLSENQISREIP-NWIW 270 (440)
Q Consensus 226 ~~---------------------------~L~~L~l~~~~l~-~l~~-~-----~~~~~L~~L~l~~~~~~~~~~-~~~~ 270 (440)
++ +|+.|++++|.++ .+|. + ..++.|+.+++++|.+ .+| ..+.
T Consensus 219 l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~ 296 (520)
T 2z7x_B 219 NPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIY 296 (520)
T ss_dssp CTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHH
T ss_pred ccchhhccccccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhh
Confidence 22 3444444444443 3333 2 4445555555554444 222 1111
Q ss_pred cc-cccceeEEEccCcccccccCCccCCceeEEEcCCccccCccc---CCCCCccEEEccCCcccc--cCCccccccCCC
Q 045270 271 RV-SVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIH---QLPNNLIYIDFSNNNFTS--SIPADTGNFMPR 344 (440)
Q Consensus 271 ~~-~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~L~~L~L~~~~~~~--~~~~~~~~~~~~ 344 (440)
.. ...+++.|++++|.+........+++|++|++++|.+.+..+ ..+++|++|++++|.+.+ .+|..+.. +++
T Consensus 297 ~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~-l~~ 375 (520)
T 2z7x_B 297 EIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ-MKS 375 (520)
T ss_dssp HHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTT-CTT
T ss_pred cccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhh-CCC
Confidence 11 123477777777776665543568888999999888877443 336788999999988874 33333444 889
Q ss_pred cceEecccccccccchh-hhhccCCCCEEEcCCCcCCCCCchhhhccccEEECCCCcccCCchhhhhcCCCCcEEECCCC
Q 045270 345 LRYFCAANNGLTGIIPA-SLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNN 423 (440)
Q Consensus 345 L~~L~l~~~~l~~~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 423 (440)
|++|++++|.+++..|. .+..+++|++|++++|+++.........+|+.|++++|+++ .+|..+..+++|+.|++++|
T Consensus 376 L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N 454 (520)
T 2z7x_B 376 LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASN 454 (520)
T ss_dssp CCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSS
T ss_pred CCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCccc-ccchhhhcCCCCCEEECCCC
Confidence 99999999988873444 47778899999999998865433223367999999999999 66777779999999999999
Q ss_pred cccccCcccccCCCCCC
Q 045270 424 QFSDKFPCWLYDAPSLH 440 (440)
Q Consensus 424 ~~~~~~~~~l~~~~~L~ 440 (440)
++++..+..+..+++|+
T Consensus 455 ~l~~l~~~~~~~l~~L~ 471 (520)
T 2z7x_B 455 QLKSVPDGIFDRLTSLQ 471 (520)
T ss_dssp CCCCCCTTTTTTCTTCC
T ss_pred cCCccCHHHhccCCccc
Confidence 99854334488887774
No 22
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=9.3e-36 Score=297.01 Aligned_cols=143 Identities=21% Similarity=0.219 Sum_probs=119.9
Q ss_pred CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCce
Q 045270 21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVA 100 (440)
Q Consensus 21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 100 (440)
..+++|||++|.+++..+. +|..+++|++|++++|.+... .+.+|.++++|++|+|++|.+.+..+.+|.++++|++
T Consensus 52 ~~~~~LdLs~N~i~~l~~~--~f~~l~~L~~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~ 128 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 128 (635)
T ss_dssp TTCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCE
T ss_pred cCCCEEEeeCCCCCCCCHH--HHhCCCCCCEEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCE
Confidence 4799999999999976666 899999999999999998764 4667999999999999999999666677999999999
Q ss_pred ecCCCCcccCccchhhhcccccceEEEecCCccCC-CCCccccccccccccCcccccEEEcCCCccCCcccccccc
Q 045270 101 LDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNG-SIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFE 175 (440)
Q Consensus 101 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 175 (440)
|++++|.++ .++...++.+++|++|++++|.+.. ..|..+..+ ++|++|++++|.+.+..+..+..
T Consensus 129 L~Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l--------~~L~~L~L~~N~l~~~~~~~l~~ 195 (635)
T 4g8a_A 129 LVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL--------TNLEHLDLSSNKIQSIYCTDLRV 195 (635)
T ss_dssp EECTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC--------TTCCEEECCSSCCCEECGGGGHH
T ss_pred EECCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccc--------hhhhhhcccCccccccccccccc
Confidence 999999998 5555578999999999999999874 345666544 68999999999887554544443
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1e-35 Score=284.45 Aligned_cols=377 Identities=20% Similarity=0.198 Sum_probs=273.0
Q ss_pred CCCCcceee--eeeCCC---------CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCC
Q 045270 6 STDCCDWSG--VDCDEA---------GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSL 74 (440)
Q Consensus 6 ~~~~~~~~~--~~~~~~---------~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L 74 (440)
+...|.|.+ +.|... +++++|++++|.+++..+. .|..+++|++|++++|.+...-.+..|.++++|
T Consensus 4 ~~~~c~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~--~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L 81 (455)
T 3v47_A 4 GTSECSVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNET--SFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSL 81 (455)
T ss_dssp ---CCEEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTT--TTSSCTTCCEEECCCCSTTCEECTTTTTTCTTC
T ss_pred ccceeEEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChh--HhccCccccEEECcCCcccceECcccccccccC
Confidence 345677654 667532 5799999999999887776 899999999999999988644246779999999
Q ss_pred cEEEcccCccccCCcccccccccCceecCCCCcccCcc-chhhhcccccceEEEecCCccCCCCCcc-ccccccccccCc
Q 045270 75 TYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSI-SSIRWEHLLNLVYAVLSDNSLNGSIPRS-MFEFPIFSNASS 152 (440)
Q Consensus 75 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~l~~~~~ 152 (440)
++|++++|.+.+..|..+.++++|++|++++|.+.+.. ....+..+++|++|++++|.+.+..|.. +.. +
T Consensus 82 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~--------l 153 (455)
T 3v47_A 82 IILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLN--------M 153 (455)
T ss_dssp CEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGG--------C
T ss_pred CEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCC--------C
Confidence 99999999999788999999999999999999998543 3345889999999999999998776766 443 4
Q ss_pred ccccEEEcCCCccCCccccccccc--cCccEEeccccccccccchhh--------HhcCCCCcEEEcCCCcccccCCccc
Q 045270 153 SALDTLDLSGNRLRGSIPVSVFEL--KKLTSLLLSSNNLHGTVQLDK--------ILNLGNLAKLDLSYNSLAVDESSRN 222 (440)
Q Consensus 153 ~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~--------~~~~~~L~~L~l~~~~~~~~~~~~~ 222 (440)
++|++|++++|.+.+..+..+..+ .+++.|+++++.+. ..+... +..+++|+.|++++|.+....+...
T Consensus 154 ~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~-~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~ 232 (455)
T 3v47_A 154 RRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQ-DMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRF 232 (455)
T ss_dssp TTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCT-TCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHH
T ss_pred CcccEEeCCCCcccccChhhhhccccccccccccccCccc-ccchhhccccccccccccceeeeEecCCCcccccchhhh
Confidence 799999999999987777777765 78999999999886 322211 2245678888888887765433321
Q ss_pred c--CCccccceeecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEEccCcccccccCC--ccCCc
Q 045270 223 Y--SFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGP--YSIPA 298 (440)
Q Consensus 223 ~--~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~ 298 (440)
. ...++|+.|+++++....... ..+.+....+..+.....++++.+++++|.+....+. ..+++
T Consensus 233 ~~~~~~~~L~~L~l~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 300 (455)
T 3v47_A 233 FDAIAGTKIQSLILSNSYNMGSSF------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTD 300 (455)
T ss_dssp HHHTTTCCEEEEECTTCTTTSCCT------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTT
T ss_pred hccccccceeeEeecccccccccc------------chhhhccCcccccccccccCceEEEecCccccccchhhcccCCC
Confidence 1 123667788877775432110 0001111111112222233466666666665554332 34667
Q ss_pred eeEEEcCCccccCcccC---CCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcC
Q 045270 299 LRFIDLSSHQLRGNIHQ---LPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLS 375 (440)
Q Consensus 299 L~~L~l~~~~~~~~~~~---~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~ 375 (440)
|++|++++|++.+..+. .+++|++|++++|.+.+..+.. +..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 301 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 379 (455)
T 3v47_A 301 LEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRM-FENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALD 379 (455)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG-GTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhH-hcCcccCCEEECCCCcccccChhhccccccccEEECC
Confidence 77777777776654332 3578889999998887433444 4448999999999999988888899999999999999
Q ss_pred CCcCCCCCchhh--hccccEEECCCCcccCCch
Q 045270 376 NNSFMKKSDAFL--NCLLQTLDLNGNRLQGTVP 406 (440)
Q Consensus 376 ~n~i~~~~~~~~--~~~L~~L~l~~n~~~~~~~ 406 (440)
+|++++++...+ .++|+.|++++|++.+..|
T Consensus 380 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 380 TNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp SSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 999998866543 4569999999999997765
No 24
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=8.4e-35 Score=278.36 Aligned_cols=344 Identities=22% Similarity=0.306 Sum_probs=190.9
Q ss_pred CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCce
Q 045270 21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVA 100 (440)
Q Consensus 21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 100 (440)
.++++|+++++.++. .+ .+..+++|++|++++|.+... +. +..+++|++|++++|.+.+. +. +.++++|++
T Consensus 46 ~~l~~L~l~~~~i~~-l~---~~~~l~~L~~L~Ls~n~l~~~--~~-~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~ 116 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS-ID---GVEYLNNLTQINFSNNQLTDI--TP-LKNLTKLVDILMNNNQIADI-TP-LANLTNLTG 116 (466)
T ss_dssp HTCCEEECCSSCCCC-CT---TGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCCE
T ss_pred ccccEEecCCCCCcc-Cc---chhhhcCCCEEECCCCccCCc--hh-hhccccCCEEECCCCccccC-hh-hcCCCCCCE
Confidence 356666666665543 22 356666666666666665442 32 66666666666666666533 22 666666666
Q ss_pred ecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCcc
Q 045270 101 LDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLT 180 (440)
Q Consensus 101 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 180 (440)
|++++|.+.+. +. +..+++|++|++++|.+. .++ .+ ..+++|++|++. +.+.. .+ .+..+++|+
T Consensus 117 L~L~~n~l~~~-~~--~~~l~~L~~L~l~~n~l~-~~~-~~--------~~l~~L~~L~l~-~~~~~-~~-~~~~l~~L~ 180 (466)
T 1o6v_A 117 LTLFNNQITDI-DP--LKNLTNLNRLELSSNTIS-DIS-AL--------SGLTSLQQLSFG-NQVTD-LK-PLANLTTLE 180 (466)
T ss_dssp EECCSSCCCCC-GG--GTTCTTCSEEEEEEEEEC-CCG-GG--------TTCTTCSEEEEE-ESCCC-CG-GGTTCTTCC
T ss_pred EECCCCCCCCC-hH--HcCCCCCCEEECCCCccC-CCh-hh--------ccCCcccEeecC-CcccC-ch-hhccCCCCC
Confidence 66666666532 22 566666666666666655 222 12 233566666664 22321 11 255666666
Q ss_pred EEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEeccCcc
Q 045270 181 SLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQ 260 (440)
Q Consensus 181 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~ 260 (440)
+|++++|.+. ..+ .+..+++|+.|++++|.+....+ +..+++|+.|++++|.++.++.+..+++|+.|++++|.
T Consensus 181 ~L~l~~n~l~-~~~--~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~ 254 (466)
T 1o6v_A 181 RLDISSNKVS-DIS--VLAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ 254 (466)
T ss_dssp EEECCSSCCC-CCG--GGGGCTTCSEEECCSSCCCCCGG---GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC
T ss_pred EEECcCCcCC-CCh--hhccCCCCCEEEecCCccccccc---ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCc
Confidence 6666666654 222 25566666666666666544332 34455666666666666655555566666666666665
Q ss_pred cccccCcccccccccceeEEEccCcccccccCCccCCceeEEEcCCccccCcccCCCCCccEEEccCCcccccCCccccc
Q 045270 261 ISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGN 340 (440)
Q Consensus 261 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~ 340 (440)
+.+..+ + ...++|+.|++++|.+...++... +++|+.|++++|.+.+ ++. +.
T Consensus 255 l~~~~~--~--~~l~~L~~L~l~~n~l~~~~~~~~---------------------l~~L~~L~L~~n~l~~-~~~-~~- 306 (466)
T 1o6v_A 255 ISNLAP--L--SGLTKLTELKLGANQISNISPLAG---------------------LTALTNLELNENQLED-ISP-IS- 306 (466)
T ss_dssp CCCCGG--G--TTCTTCSEEECCSSCCCCCGGGTT---------------------CTTCSEEECCSSCCSC-CGG-GG-
T ss_pred cccchh--h--hcCCCCCEEECCCCccCccccccC---------------------CCccCeEEcCCCcccC-chh-hc-
Confidence 543322 2 122335555555555444433333 3455555555555552 222 22
Q ss_pred cCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchhhhccccEEECCCCcccCCchhhhhcCCCCcEEEC
Q 045270 341 FMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNL 420 (440)
Q Consensus 341 ~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l 420 (440)
.+++|+.|++++|.+++..+ +..+++|++|++++|++.+.+.....++|+.|++++|++.+..| +..+++|+.|++
T Consensus 307 ~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l 382 (466)
T 1o6v_A 307 NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 382 (466)
T ss_dssp GCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEEC
T ss_pred CCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCchhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEec
Confidence 26666666666666665443 55666666666666666665433334456666666666665554 566666666666
Q ss_pred CCCcccc
Q 045270 421 GNNQFSD 427 (440)
Q Consensus 421 ~~n~~~~ 427 (440)
++|++++
T Consensus 383 ~~n~~~~ 389 (466)
T 1o6v_A 383 NDQAWTN 389 (466)
T ss_dssp CCEEEEC
T ss_pred cCCcccC
Confidence 6666655
No 25
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.8e-36 Score=286.03 Aligned_cols=365 Identities=23% Similarity=0.311 Sum_probs=195.7
Q ss_pred CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCC-------------CcEEEcccCccccC
Q 045270 21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISS-------------LTYLNLSDAGFAGH 87 (440)
Q Consensus 21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~-------------L~~L~l~~~~~~~~ 87 (440)
+++++|++++|.+ +.+|. +++++++|++|++++|.+.+. +|..++.+++ +++|+++++.+. .
T Consensus 11 ~~L~~L~l~~n~l-~~iP~--~i~~L~~L~~L~l~~n~~~~~-~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~-~ 85 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPV--EAENVKSKTEYYNAWSEWERN-APPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS-S 85 (454)
T ss_dssp --------------------------CCHHHHHHHHHHHHHT-SCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCS-C
T ss_pred ccchhhhcccCch-hhCCh--hHhcccchhhhhccCCccccc-CCcccccchhcchhhhhhhhccCCCEEEecCCccc-c
Confidence 5677777777777 56666 677777777777777766544 5666655544 366666666655 2
Q ss_pred CcccccccccCceecCCCCcccCccchhh---------------hcc-cccceEEEecCCccCCCCCccccccccccccC
Q 045270 88 IPLQISSMARLVALDFSFNQFSGSISSIR---------------WEH-LLNLVYAVLSDNSLNGSIPRSMFEFPIFSNAS 151 (440)
Q Consensus 88 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~~---------------~~~-l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~ 151 (440)
+|.. .++|++|++++|.+++ ++... +.. .++|++|++++|.+. .+| .+. .
T Consensus 86 lp~~---~~~L~~L~l~~n~l~~-lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~-~lp-~~~--------~ 151 (454)
T 1jl5_A 86 LPEL---PPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLE-KLP-ELQ--------N 151 (454)
T ss_dssp CCSC---CTTCSEEECCSSCCSS-CCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCS-SCC-CCT--------T
T ss_pred CCCC---cCCCCEEEccCCcCCc-cccccCCCcEEECCCCccCcccCCCCCCCEEECcCCCCC-CCc-ccC--------C
Confidence 3321 2455555555555553 22100 000 135555555555554 244 232 2
Q ss_pred cccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccce
Q 045270 152 SSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLEL 231 (440)
Q Consensus 152 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 231 (440)
+++|++|++++|.+. .+|.. ..+|++|++++|.+.+ ++ .+..+++|+.|++++|.++.... ..++|+.
T Consensus 152 l~~L~~L~l~~N~l~-~lp~~---~~~L~~L~L~~n~l~~-l~--~~~~l~~L~~L~l~~N~l~~l~~-----~~~~L~~ 219 (454)
T 1jl5_A 152 SSFLKIIDVDNNSLK-KLPDL---PPSLEFIAAGNNQLEE-LP--ELQNLPFLTAIYADNNSLKKLPD-----LPLSLES 219 (454)
T ss_dssp CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCSS-CC--CCTTCTTCCEEECCSSCCSSCCC-----CCTTCCE
T ss_pred CCCCCEEECCCCcCc-ccCCC---cccccEEECcCCcCCc-Cc--cccCCCCCCEEECCCCcCCcCCC-----CcCcccE
Confidence 345666666666555 23332 2356666666666552 33 35666666666666666653221 1246777
Q ss_pred eecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEEccCcccccccCCccCCceeEEEcCCccccC
Q 045270 232 LNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRG 311 (440)
Q Consensus 232 L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 311 (440)
|++++|.++.+|.+..+++|+.|++++|.+.+ +|..+ ++|+.|++++|.+..++.. +++|++|++++|.+.+
T Consensus 220 L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~-l~~~~-----~~L~~L~l~~N~l~~l~~~--~~~L~~L~ls~N~l~~ 291 (454)
T 1jl5_A 220 IVAGNNILEELPELQNLPFLTTIYADNNLLKT-LPDLP-----PSLEALNVRDNYLTDLPEL--PQSLTFLDVSENIFSG 291 (454)
T ss_dssp EECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-CCSCC-----TTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSE
T ss_pred EECcCCcCCcccccCCCCCCCEEECCCCcCCc-ccccc-----cccCEEECCCCcccccCcc--cCcCCEEECcCCccCc
Confidence 77777777666666677777777777776653 33221 3477777777777665432 4677777777777665
Q ss_pred cccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchhhhccc
Q 045270 312 NIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLL 391 (440)
Q Consensus 312 ~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~L 391 (440)
. +..+++|+.|++++|.+.+ ++ ...++|+.|++++|.+++ .|.. +++|++|++++|.++.+|. ...+|
T Consensus 292 l-~~~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~lp~--~l~~L 359 (454)
T 1jl5_A 292 L-SELPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAEVPE--LPQNL 359 (454)
T ss_dssp E-SCCCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSCCCC--CCTTC
T ss_pred c-cCcCCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccccccc--hhhhc
Confidence 2 2334677888888777763 22 213589999999999885 4433 5889999999999998877 56779
Q ss_pred cEEECCCCcccC--CchhhhhcC-------------CCCcEEECCCCcccc--cCcccccCC
Q 045270 392 QTLDLNGNRLQG--TVPKSIANC-------------KMLEVLNLGNNQFSD--KFPCWLYDA 436 (440)
Q Consensus 392 ~~L~l~~n~~~~--~~~~~~~~l-------------~~L~~L~l~~n~~~~--~~~~~l~~~ 436 (440)
++|++++|++.+ .+|..+.++ ++|+.|++++|++++ .+|.++..+
T Consensus 360 ~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl~~L 421 (454)
T 1jl5_A 360 KQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVEDL 421 (454)
T ss_dssp CEEECCSSCCSSCCCCCTTCCEEECCC-----------------------------------
T ss_pred cEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchhhHhhe
Confidence 999999999998 677788777 889999999999987 788877654
No 26
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.4e-36 Score=293.57 Aligned_cols=377 Identities=19% Similarity=0.209 Sum_probs=204.8
Q ss_pred EEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecC
Q 045270 24 IGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDF 103 (440)
Q Consensus 24 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 103 (440)
++++++++.+++ +|. .+. ++|++|++++|.+... .+..|.++++|++|++++|.+.+..|.+|.++++|++|++
T Consensus 34 ~~l~ls~~~L~~-ip~--~~~--~~L~~L~Ls~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 107 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPK--DLP--PRTKALSLSQNSISEL-RMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDV 107 (562)
T ss_dssp CEEECTTSCCCS-CCT--TSC--TTCCEEECCSSCCCCC-CGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEEC
T ss_pred cEEEcCCCCCcc-CCC--CCC--CCcCEEECCCCCcccc-ChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEEC
Confidence 667777776664 443 222 6777777777776554 4456677777777777777776555666777777777777
Q ss_pred CCCcccCccchhhhcccccceEEEecCCccCC-CCCccccccccccccCcccccEEEcCCCccCCccccccccccCc--c
Q 045270 104 SFNQFSGSISSIRWEHLLNLVYAVLSDNSLNG-SIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKL--T 180 (440)
Q Consensus 104 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L--~ 180 (440)
++|.++ .++.. .+++|++|++++|.+.+ ..|..+..+ ++|++|++++|.+.. ..+..+++| +
T Consensus 108 s~N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l--------~~L~~L~L~~n~l~~---~~~~~l~~L~L~ 172 (562)
T 3a79_B 108 SHNRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNL--------TKLTFLGLSAAKFRQ---LDLLPVAHLHLS 172 (562)
T ss_dssp TTSCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGC--------TTCCEEEEECSBCCT---TTTGGGTTSCEE
T ss_pred CCCcCC-ccCcc---ccccCCEEECCCCCccccCchHhhccc--------CcccEEecCCCcccc---Cchhhhhhceee
Confidence 777766 44432 56777777777777663 223455444 566777777766653 223344444 6
Q ss_pred EEecccccc--cc-------------------------ccchhhHhcCCCCcEEEcCCCcccccCC---ccccC------
Q 045270 181 SLLLSSNNL--HG-------------------------TVQLDKILNLGNLAKLDLSYNSLAVDES---SRNYS------ 224 (440)
Q Consensus 181 ~L~l~~~~~--~~-------------------------~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~------ 224 (440)
+|++++|.+ .+ ......+..+++|+.+++++|....... ...+.
T Consensus 173 ~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~ 252 (562)
T 3a79_B 173 CILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLL 252 (562)
T ss_dssp EEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCE
T ss_pred EEEeecccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcce
Confidence 666666655 31 1222223344555666665552100000 00000
Q ss_pred ---------------------CccccceeecCCCCCC-CCCC-C-----cccCc--------------------------
Q 045270 225 ---------------------FSPMLELLNLASCKLR-EIPN-L-----KNQSQ-------------------------- 250 (440)
Q Consensus 225 ---------------------~~~~L~~L~l~~~~l~-~l~~-~-----~~~~~-------------------------- 250 (440)
..++|++|++++|.++ .+|. + ..++.
T Consensus 253 ~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~ 332 (562)
T 3a79_B 253 NVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMN 332 (562)
T ss_dssp EEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCC
T ss_pred EEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCc
Confidence 1125666666666554 4443 2 22222
Q ss_pred ccEEeccCcccccccCcccccccccceeEEEccCcccccccC--CccCCceeEEEcCCccccCcc-----cCCCCCccEE
Q 045270 251 LQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQG--PYSIPALRFIDLSSHQLRGNI-----HQLPNNLIYI 323 (440)
Q Consensus 251 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~-----~~~~~~L~~L 323 (440)
|+.|++++|.+.... + ....++|++|++++|.+++..+ ...+++|++|++++|++.+.. ...+++|++|
T Consensus 333 L~~L~l~~n~~~~~~---~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L 408 (562)
T 3a79_B 333 IKMLSISDTPFIHMV---C-PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETL 408 (562)
T ss_dssp CSEEEEESSCCCCCC---C-CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEE
T ss_pred ceEEEccCCCccccc---C-ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEE
Confidence 233333333221100 0 0123446666666666655322 244666666666666665421 2334566666
Q ss_pred EccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchhh-hccccEEECCCCccc
Q 045270 324 DFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFL-NCLLQTLDLNGNRLQ 402 (440)
Q Consensus 324 ~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~-~~~L~~L~l~~n~~~ 402 (440)
++++|.+.+.+|...+..+++|+.|++++|.+++..+..+. ++|++|++++|+++.+|...+ .++|++|++++|+++
T Consensus 409 ~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~ 486 (562)
T 3a79_B 409 DVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK 486 (562)
T ss_dssp ECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC
T ss_pred ECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC
Confidence 66666666445655554466666666666666544443332 566667776666666654333 344667777776666
Q ss_pred CCchhhhhcCCCCcEEECCCCcccc
Q 045270 403 GTVPKSIANCKMLEVLNLGNNQFSD 427 (440)
Q Consensus 403 ~~~~~~~~~l~~L~~L~l~~n~~~~ 427 (440)
...+..+..+++|+.|++++|++..
T Consensus 487 ~l~~~~~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 487 SVPDGVFDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp CCCTTSTTTCTTCCCEECCSCCBCC
T ss_pred CCCHHHHhcCCCCCEEEecCCCcCC
Confidence 4333336666667777777666654
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.5e-35 Score=288.84 Aligned_cols=365 Identities=20% Similarity=0.215 Sum_probs=273.3
Q ss_pred CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCce
Q 045270 21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVA 100 (440)
Q Consensus 21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 100 (440)
+++++|++++|.+++..+. .|..+++|++|++++|.+... .|.+|.++++|++|++++|.+. .+|.. .+++|++
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~ 125 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMP--DISFLSELRVLRLSHNRIRSL-DFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRH 125 (562)
T ss_dssp TTCCEEECCSSCCCCCCGG--GTTTCTTCCEEECCSCCCCEE-CTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSE
T ss_pred CCcCEEECCCCCccccChh--hhccCCCccEEECCCCCCCcC-CHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCE
Confidence 6899999999999876655 899999999999999998765 6788999999999999999998 66765 8999999
Q ss_pred ecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCcc--CCccccccc----
Q 045270 101 LDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRL--RGSIPVSVF---- 174 (440)
Q Consensus 101 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~--~~~~~~~~~---- 174 (440)
|++++|.+.+......++.+++|++|++++|.+... .+..++ .+ +|++|++++|.+ .+..+..+.
T Consensus 126 L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~-----~L-~L~~L~L~~n~l~~~~~~~~~l~~l~~ 196 (562)
T 3a79_B 126 LDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVA-----HL-HLSCILLDLVSYHIKGGETESLQIPNT 196 (562)
T ss_dssp EECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGT-----TS-CEEEEEEEESSCCCCSSSCCEEEECCE
T ss_pred EECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhh-----hc-eeeEEEeecccccccccCcccccccCc
Confidence 999999998533335789999999999999998742 233331 11 338888887776 433333333
Q ss_pred ----------------------cccCccEEeccccc----------------------------cccccc--hhhHhcCC
Q 045270 175 ----------------------ELKKLTSLLLSSNN----------------------------LHGTVQ--LDKILNLG 202 (440)
Q Consensus 175 ----------------------~~~~L~~L~l~~~~----------------------------~~~~~~--~~~~~~~~ 202 (440)
.+++|+.+++++|. +.+... .......+
T Consensus 197 ~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~ 276 (562)
T 3a79_B 197 TVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPR 276 (562)
T ss_dssp EEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTS
T ss_pred ceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcc
Confidence 24456666665542 110000 00111234
Q ss_pred CCcEEEcCCCcccccCCcccc----CCc--------------------------cccceeecCCCCCCCCCCCcccCccc
Q 045270 203 NLAKLDLSYNSLAVDESSRNY----SFS--------------------------PMLELLNLASCKLREIPNLKNQSQLQ 252 (440)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~~~----~~~--------------------------~~L~~L~l~~~~l~~l~~~~~~~~L~ 252 (440)
+|+.|++++|.+.+..+...+ ..+ .+|+.|++++|.+..++....+++|+
T Consensus 277 ~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~ 356 (562)
T 3a79_B 277 PVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFT 356 (562)
T ss_dssp SEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCC
T ss_pred cccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCce
Confidence 788888888877643332211 111 34788888888776665447889999
Q ss_pred EEeccCcccccccCcccccccccceeEEEccCcccccccC----CccCCceeEEEcCCccccCcc----cCCCCCccEEE
Q 045270 253 YLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQG----PYSIPALRFIDLSSHQLRGNI----HQLPNNLIYID 324 (440)
Q Consensus 253 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~L~~L~l~~~~~~~~~----~~~~~~L~~L~ 324 (440)
.|++++|.+.+..+..+.. .++|+.|++++|.++.++. ...+++|++|++++|.+.+.. ...+++|++|+
T Consensus 357 ~L~l~~n~l~~~~~~~~~~--l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~ 434 (562)
T 3a79_B 357 FLNFTQNVFTDSVFQGCST--LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLN 434 (562)
T ss_dssp EEECCSSCCCTTTTTTCCS--CSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEE
T ss_pred EEECCCCccccchhhhhcc--cCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEE
Confidence 9999999998877777754 4569999999999987653 467899999999999988633 23368999999
Q ss_pred ccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCch-hh-hccccEEECCCCccc
Q 045270 325 FSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDA-FL-NCLLQTLDLNGNRLQ 402 (440)
Q Consensus 325 L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~-~~-~~~L~~L~l~~n~~~ 402 (440)
+++|.+++.++..+ .++|+.|++++|.++ .+|..+..+++|++|++++|+++.++.. +. .++|+.|++++|++.
T Consensus 435 l~~n~l~~~~~~~l---~~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~ 510 (562)
T 3a79_B 435 LSSNMLTGSVFRCL---PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWD 510 (562)
T ss_dssp CCSSCCCGGGGSSC---CTTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBC
T ss_pred CCCCCCCcchhhhh---cCcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcC
Confidence 99999986555443 269999999999999 5666666999999999999999998775 22 456999999999999
Q ss_pred CCch
Q 045270 403 GTVP 406 (440)
Q Consensus 403 ~~~~ 406 (440)
+.-+
T Consensus 511 c~c~ 514 (562)
T 3a79_B 511 CTCP 514 (562)
T ss_dssp CCHH
T ss_pred CCcc
Confidence 7544
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=5e-33 Score=266.07 Aligned_cols=335 Identities=24% Similarity=0.291 Sum_probs=220.0
Q ss_pred cccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccc
Q 045270 44 FSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNL 123 (440)
Q Consensus 44 ~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L 123 (440)
..+++++.|+++++.+.. ++ .+..+++|++|++++|.+.+ ++. +.++++|++|++++|.+.+..+ +..+++|
T Consensus 43 ~~l~~l~~L~l~~~~i~~--l~-~~~~l~~L~~L~Ls~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~~~---~~~l~~L 114 (466)
T 1o6v_A 43 TDLDQVTTLQADRLGIKS--ID-GVEYLNNLTQINFSNNQLTD-ITP-LKNLTKLVDILMNNNQIADITP---LANLTNL 114 (466)
T ss_dssp HHHHTCCEEECCSSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGG---GTTCTTC
T ss_pred hHhccccEEecCCCCCcc--Cc-chhhhcCCCEEECCCCccCC-chh-hhccccCCEEECCCCccccChh---hcCCCCC
Confidence 346677777777766643 33 36667777777777777663 333 6777777777777777663322 6666777
Q ss_pred eEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCC
Q 045270 124 VYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGN 203 (440)
Q Consensus 124 ~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 203 (440)
++|++++|.+.+ ++. + ..+++|++|++++|.+.. .+ .+..+++|++|.+.+ .+. ... .+..+++
T Consensus 115 ~~L~L~~n~l~~-~~~-~--------~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~~-~~~-~~~--~~~~l~~ 178 (466)
T 1o6v_A 115 TGLTLFNNQITD-IDP-L--------KNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFGN-QVT-DLK--PLANLTT 178 (466)
T ss_dssp CEEECCSSCCCC-CGG-G--------TTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEEE-SCC-CCG--GGTTCTT
T ss_pred CEEECCCCCCCC-ChH-H--------cCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecCC-ccc-Cch--hhccCCC
Confidence 777777776653 222 2 233566667776666652 33 355666666666642 222 111 2555666
Q ss_pred CcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEEcc
Q 045270 204 LAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLS 283 (440)
Q Consensus 204 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 283 (440)
|+.|++++|.+.... .+..+++|+.|++++|.++.++.+..+++|+.|++++|.+
T Consensus 179 L~~L~l~~n~l~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l---------------------- 233 (466)
T 1o6v_A 179 LERLDISSNKVSDIS---VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQL---------------------- 233 (466)
T ss_dssp CCEEECCSSCCCCCG---GGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCC----------------------
T ss_pred CCEEECcCCcCCCCh---hhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCc----------------------
Confidence 666666666554332 1344555555555555555544444555555555555544
Q ss_pred CcccccccCCccCCceeEEEcCCccccCcc-cCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhh
Q 045270 284 HNLLVGFQGPYSIPALRFIDLSSHQLRGNI-HQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPAS 362 (440)
Q Consensus 284 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 362 (440)
..+.....+++|++|++++|.+.+.. ...+++|++|++++|.+.+ ++. +. .+++|+.|++++|.+++..+
T Consensus 234 ----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~-~~~-~~-~l~~L~~L~L~~n~l~~~~~-- 304 (466)
T 1o6v_A 234 ----KDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISN-ISP-LA-GLTALTNLELNENQLEDISP-- 304 (466)
T ss_dssp ----CCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCC-CGG-GT-TCTTCSEEECCSSCCSCCGG--
T ss_pred ----ccchhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCc-ccc-cc-CCCccCeEEcCCCcccCchh--
Confidence 33333334555666666665554433 2335678888888888873 443 33 48999999999999987554
Q ss_pred hhccCCCCEEEcCCCcCCCCCchhhhccccEEECCCCcccCCchhhhhcCCCCcEEECCCCcccccCcccccCCCCCC
Q 045270 363 LCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSLH 440 (440)
Q Consensus 363 ~~~~~~L~~L~l~~n~i~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 440 (440)
+..+++|++|++++|.+.+.+.....++|++|++++|++.+. ..+.++++|+.|++++|++++..| +..+++|+
T Consensus 305 ~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 378 (466)
T 1o6v_A 305 ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRIT 378 (466)
T ss_dssp GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCC
T ss_pred hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCC
Confidence 889999999999999999986655567799999999999976 468999999999999999998877 77777764
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4.7e-34 Score=270.77 Aligned_cols=343 Identities=23% Similarity=0.315 Sum_probs=205.6
Q ss_pred cccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccC-------------ceecCCCCcccC
Q 045270 44 FSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARL-------------VALDFSFNQFSG 110 (440)
Q Consensus 44 ~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L-------------~~L~L~~~~~~~ 110 (440)
.+.++|++|+++++.+ +. +|+.++++++|++|++++|.+.+.+|..++++.+| ++|++++|.+++
T Consensus 8 ~~~~~L~~L~l~~n~l-~~-iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~ 85 (454)
T 1jl5_A 8 VSNTFLQEPLRHSSNL-TE-MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS 85 (454)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC
T ss_pred cccccchhhhcccCch-hh-CChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc
Confidence 3568999999999999 33 89999999999999999999998999999988765 999999999885
Q ss_pred ccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccc
Q 045270 111 SISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLH 190 (440)
Q Consensus 111 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 190 (440)
++. ..++|++|++++|.+++ +|..+ ++|++|++++|.+.+ ++.. .++|++|++++|.+.
T Consensus 86 -lp~----~~~~L~~L~l~~n~l~~-lp~~~-----------~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~ 144 (454)
T 1jl5_A 86 -LPE----LPPHLESLVASCNSLTE-LPELP-----------QSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLE 144 (454)
T ss_dssp -CCS----CCTTCSEEECCSSCCSS-CCCCC-----------TTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCS
T ss_pred -CCC----CcCCCCEEEccCCcCCc-ccccc-----------CCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCC
Confidence 332 23789999999999984 66543 456666666666652 2221 146666666666665
Q ss_pred cccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEeccCcccccccCcccc
Q 045270 191 GTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIW 270 (440)
Q Consensus 191 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 270 (440)
.++ .+..+++|+.|++++|.++..+. ..++|+.|++++|.++.+|.+..+++|+.|++++|.+.+ +|...
T Consensus 145 -~lp--~~~~l~~L~~L~l~~N~l~~lp~-----~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~-l~~~~- 214 (454)
T 1jl5_A 145 -KLP--ELQNSSFLKIIDVDNNSLKKLPD-----LPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKK-LPDLP- 214 (454)
T ss_dssp -SCC--CCTTCTTCCEEECCSSCCSCCCC-----CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-CCCCC-
T ss_pred -CCc--ccCCCCCCCEEECCCCcCcccCC-----CcccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCc-CCCCc-
Confidence 243 35666666666666666654221 123566666666666666666666666666666666553 22221
Q ss_pred cccccceeEEEccCcccccccCCccCCceeEEEcCCccccCcccCCCCCccEEEccCCcccccCCccc------------
Q 045270 271 RVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADT------------ 338 (440)
Q Consensus 271 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~------------ 338 (440)
.+|++|++++|.+..++....+++|++|++++|++.+ ++..+++|+.|++++|.+. .+|...
T Consensus 215 ----~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~N~l~-~l~~~~~~L~~L~ls~N~ 288 (454)
T 1jl5_A 215 ----LSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVRDNYLT-DLPELPQSLTFLDVSENI 288 (454)
T ss_dssp ----TTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSC
T ss_pred ----CcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCc-ccccccccCEEECCCCccc-ccCcccCcCCEEECcCCc
Confidence 2366666666666555544455666666666665543 2223345555555555554 233210
Q ss_pred ----cccCCCcceEecccccccccchhhhhcc-CCCCEEEcCCCcCCCCCchhhhccccEEECCCCcccCCchhhhhcCC
Q 045270 339 ----GNFMPRLRYFCAANNGLTGIIPASLCNA-TTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCK 413 (440)
Q Consensus 339 ----~~~~~~L~~L~l~~~~l~~~~~~~~~~~-~~L~~L~l~~n~i~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~ 413 (440)
....++|++|++++|.+++. ..+ ++|++|++++|++.+++.. ..+|+.|++++|+++. +|. .++
T Consensus 289 l~~l~~~~~~L~~L~l~~N~l~~i-----~~~~~~L~~L~Ls~N~l~~lp~~--~~~L~~L~L~~N~l~~-lp~---~l~ 357 (454)
T 1jl5_A 289 FSGLSELPPNLYYLNASSNEIRSL-----CDLPPSLEELNVSNNKLIELPAL--PPRLERLIASFNHLAE-VPE---LPQ 357 (454)
T ss_dssp CSEESCCCTTCCEEECCSSCCSEE-----CCCCTTCCEEECCSSCCSCCCCC--CTTCCEEECCSSCCSC-CCC---CCT
T ss_pred cCcccCcCCcCCEEECcCCcCCcc-----cCCcCcCCEEECCCCcccccccc--CCcCCEEECCCCcccc-ccc---hhh
Confidence 00123455555555554431 122 5889999999998887654 4679999999999984 444 478
Q ss_pred CCcEEECCCCcccc--cCcccccCC
Q 045270 414 MLEVLNLGNNQFSD--KFPCWLYDA 436 (440)
Q Consensus 414 ~L~~L~l~~n~~~~--~~~~~l~~~ 436 (440)
+|+.|++++|++++ .+|.++.++
T Consensus 358 ~L~~L~L~~N~l~~l~~ip~~l~~L 382 (454)
T 1jl5_A 358 NLKQLHVEYNPLREFPDIPESVEDL 382 (454)
T ss_dssp TCCEEECCSSCCSSCCCCCTTCCEE
T ss_pred hccEEECCCCCCCcCCCChHHHHhh
Confidence 99999999999998 788877665
No 30
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.5e-34 Score=271.84 Aligned_cols=346 Identities=20% Similarity=0.205 Sum_probs=243.3
Q ss_pred CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCce
Q 045270 21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVA 100 (440)
Q Consensus 21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 100 (440)
+++++|+++++.+++. | .+..+++|++|++++|.+... + ++.+++|++|++++|.+.+ ++ ++++++|++
T Consensus 42 ~~L~~L~Ls~n~l~~~-~---~l~~l~~L~~L~Ls~n~l~~~--~--~~~l~~L~~L~Ls~N~l~~-~~--~~~l~~L~~ 110 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T---GIEKLTGLTKLICTSNNITTL--D--LSQNTNLTYLACDSNKLTN-LD--VTPLTKLTY 110 (457)
T ss_dssp TTCCEEECCSSCCCCC-T---TGGGCTTCSEEECCSSCCSCC--C--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCCE
T ss_pred CCCCEEEccCCCcccC-h---hhcccCCCCEEEccCCcCCeE--c--cccCCCCCEEECcCCCCce-ee--cCCCCcCCE
Confidence 6788888888888762 2 588888889999988887653 3 7788888999998888874 33 788888899
Q ss_pred ecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCcc
Q 045270 101 LDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLT 180 (440)
Q Consensus 101 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 180 (440)
|++++|.+.+ ++ ++.+++|++|++++|.+++ ++ + ..+++|++|++++|...+.+ .+..+++|+
T Consensus 111 L~L~~N~l~~-l~---~~~l~~L~~L~l~~N~l~~-l~--l--------~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~ 173 (457)
T 3bz5_A 111 LNCDTNKLTK-LD---VSQNPLLTYLNCARNTLTE-ID--V--------SHNTQLTELDCHLNKKITKL--DVTPQTQLT 173 (457)
T ss_dssp EECCSSCCSC-CC---CTTCTTCCEEECTTSCCSC-CC--C--------TTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred EECCCCcCCe-ec---CCCCCcCCEEECCCCccce-ec--c--------ccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence 9998888874 32 6788888888888888874 32 3 33468888888888544344 467788888
Q ss_pred EEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEeccCcc
Q 045270 181 SLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQ 260 (440)
Q Consensus 181 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~ 260 (440)
+|++++|.+. .++ +..+++|+.|++++|.++... +..+++|+.|++++|.++.+| +..+++|+.|++++|.
T Consensus 174 ~L~ls~n~l~-~l~---l~~l~~L~~L~l~~N~l~~~~----l~~l~~L~~L~Ls~N~l~~ip-~~~l~~L~~L~l~~N~ 244 (457)
T 3bz5_A 174 TLDCSFNKIT-ELD---VSQNKLLNRLNCDTNNITKLD----LNQNIQLTFLDCSSNKLTEID-VTPLTQLTYFDCSVNP 244 (457)
T ss_dssp EEECCSSCCC-CCC---CTTCTTCCEEECCSSCCSCCC----CTTCTTCSEEECCSSCCSCCC-CTTCTTCSEEECCSSC
T ss_pred EEECCCCccc-eec---cccCCCCCEEECcCCcCCeec----cccCCCCCEEECcCCcccccC-ccccCCCCEEEeeCCc
Confidence 8888888887 343 677888888888888887552 567788888888888888887 7888888888888888
Q ss_pred cccccCcccccccccceeEEEccCcccccccCCccCCceeEEEcCCccccCccc-CCCCCccEEEccCCcccccCCcc--
Q 045270 261 ISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIH-QLPNNLIYIDFSNNNFTSSIPAD-- 337 (440)
Q Consensus 261 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~L~~L~L~~~~~~~~~~~~-- 337 (440)
+.+..+.. .++|+.++++.+.+ +.+++++|...+..+ ..+++|+.|++++|...+.+|..
T Consensus 245 l~~~~~~~-----l~~L~~L~l~~n~L------------~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~ 307 (457)
T 3bz5_A 245 LTELDVST-----LSKLTTLHCIQTDL------------LEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAA 307 (457)
T ss_dssp CSCCCCTT-----CTTCCEEECTTCCC------------SCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTC
T ss_pred CCCcCHHH-----CCCCCEEeccCCCC------------CEEECCCCccCCcccccccccCCEEECCCCcccceeccCCC
Confidence 87643322 23466666655433 233333333322221 12345555555555433332211
Q ss_pred -----ccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchhhhccccEEECCCCcccCCchhhhhcC
Q 045270 338 -----TGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANC 412 (440)
Q Consensus 338 -----~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l 412 (440)
....+++|+.|++++|.+++. .+..+++|+.|++++|++.+++ .|+.|+++.|.+.+. ..+
T Consensus 308 ~L~~L~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~l~------~L~~L~l~~n~l~g~-----~~~ 373 (457)
T 3bz5_A 308 GITELDLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQDFS------SVGKIPALNNNFEAE-----GQT 373 (457)
T ss_dssp CCSCCCCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCBCT------TGGGSSGGGTSEEEE-----EEE
T ss_pred cceEechhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCCcc------ccccccccCCcEEec-----cee
Confidence 012257899999999999874 3888899999999999988753 456666777766654 244
Q ss_pred CCCcEEECCCCcccccCccccc
Q 045270 413 KMLEVLNLGNNQFSDKFPCWLY 434 (440)
Q Consensus 413 ~~L~~L~l~~n~~~~~~~~~l~ 434 (440)
..|..+++++|.+++.+|..+.
T Consensus 374 ~~l~~l~l~~N~l~g~ip~~~~ 395 (457)
T 3bz5_A 374 ITMPKETLTNNSLTIAVSPDLL 395 (457)
T ss_dssp EECCCBCCBTTBEEEECCTTCB
T ss_pred eecCccccccCcEEEEcChhHh
Confidence 5667778888888887776554
No 31
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.4e-33 Score=279.59 Aligned_cols=396 Identities=20% Similarity=0.170 Sum_probs=255.0
Q ss_pred CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCce
Q 045270 21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVA 100 (440)
Q Consensus 21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 100 (440)
+++++|+|++|.+++..+. +|..+++|++|++++|++... .+..|.++++|++|++++|.+.+..+..|+++++|++
T Consensus 76 ~~L~~L~Ls~N~i~~i~~~--~f~~L~~L~~L~Ls~N~l~~l-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~ 152 (635)
T 4g8a_A 76 PELQVLDLSRCEIQTIEDG--AYQSLSHLSTLILTGNPIQSL-ALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKE 152 (635)
T ss_dssp TTCCEEECTTCCCCEECTT--TTTTCTTCCEEECTTCCCCEE-CGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCE
T ss_pred CCCCEEECCCCcCCCcChh--HhcCCCCCCEEEccCCcCCCC-CHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCe
Confidence 6899999999999876666 899999999999999998654 4567899999999999999999766677999999999
Q ss_pred ecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccc-------------------cCcccccEEEcC
Q 045270 101 LDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSN-------------------ASSSALDTLDLS 161 (440)
Q Consensus 101 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~-------------------~~~~~L~~L~l~ 161 (440)
|++++|.+........+..+++|++|++++|.+.+..+..+..+..+.. .....++.+++.
T Consensus 153 L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~ 232 (635)
T 4g8a_A 153 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLR 232 (635)
T ss_dssp EECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEE
T ss_pred eccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhh
Confidence 9999999985444456899999999999999998666665554432211 001112222222
Q ss_pred CCccCC----------------------------------------------------------ccccccccccCccEEe
Q 045270 162 GNRLRG----------------------------------------------------------SIPVSVFELKKLTSLL 183 (440)
Q Consensus 162 ~~~~~~----------------------------------------------------------~~~~~~~~~~~L~~L~ 183 (440)
++.... .....+....+++.+.
T Consensus 233 ~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~ 312 (635)
T 4g8a_A 233 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFS 312 (635)
T ss_dssp SCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEE
T ss_pred cccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccc
Confidence 221100 0001122234455555
Q ss_pred ccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEeccCccccc
Q 045270 184 LSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISR 263 (440)
Q Consensus 184 l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~ 263 (440)
+.++.+. .. ..+.....++.|++.++.+...... .++.++.+.+..+.....+....+++|+.+++++|.+..
T Consensus 313 ~~~~~~~-~~--~~~~~~~~L~~L~l~~~~~~~~~~~----~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~ 385 (635)
T 4g8a_A 313 LVSVTIE-RV--KDFSYNFGWQHLELVNCKFGQFPTL----KLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSF 385 (635)
T ss_dssp EESCEEE-EC--GGGGSCCCCSEEEEESCEESSCCCC----BCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBE
T ss_pred ccccccc-cc--cccccchhhhhhhcccccccCcCcc----cchhhhhcccccccCCCCcccccccccccchhhcccccc
Confidence 5555543 22 2355667888888888776543322 234455555555555444444455555555555554432
Q ss_pred ccCccccc-----------------------ccccceeEEEccCcccccccCC---ccCCceeEEEcCCccccCccc---
Q 045270 264 EIPNWIWR-----------------------VSVVGLHCLNLSHNLLVGFQGP---YSIPALRFIDLSSHQLRGNIH--- 314 (440)
Q Consensus 264 ~~~~~~~~-----------------------~~~~~L~~L~l~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~--- 314 (440)
........ ...++++.+++..+......+. ..+++++.++++.|.+.....
T Consensus 386 ~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~ 465 (635)
T 4g8a_A 386 KGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 465 (635)
T ss_dssp EEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred ccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccccccccccccc
Confidence 11111111 1223455566555544333322 345666777777766554332
Q ss_pred CCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchhh--hcccc
Q 045270 315 QLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFL--NCLLQ 392 (440)
Q Consensus 315 ~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~--~~~L~ 392 (440)
..++.++.|++++|.+...+....+..+++|++|++++|++++..|..|.++++|++|+|++|+++.++...+ .++|+
T Consensus 466 ~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~ 545 (635)
T 4g8a_A 466 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 545 (635)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCC
T ss_pred ccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCC
Confidence 2356777888877765433333334447788888888888877777777788888888888888777754433 35588
Q ss_pred EEECCCCcccCCchhhhhcC-CCCcEEECCCCccc
Q 045270 393 TLDLNGNRLQGTVPKSIANC-KMLEVLNLGNNQFS 426 (440)
Q Consensus 393 ~L~l~~n~~~~~~~~~~~~l-~~L~~L~l~~n~~~ 426 (440)
.|++++|++++..|..+.++ ++|+.|++++|++.
T Consensus 546 ~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~ 580 (635)
T 4g8a_A 546 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 580 (635)
T ss_dssp EEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred EEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence 88888888887777777776 56888888887775
No 32
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=2.3e-34 Score=260.23 Aligned_cols=268 Identities=32% Similarity=0.481 Sum_probs=226.9
Q ss_pred CCCCCCCCCcc--eeeeeeCCC---CceEEEeeccceeec--ccCCCccccccCCCCeEEecC-CccCCCccccchhcCC
Q 045270 1 MQWRQSTDCCD--WSGVDCDEA---GHVIGLDLSTESISG--GIENAASLFSLHYLRSLNLAR-TSFNGTQIPSKLANIS 72 (440)
Q Consensus 1 ~~w~~~~~~~~--~~~~~~~~~---~~l~~L~l~~~~~~~--~~~~~~~~~~l~~L~~L~l~~-~~~~~~~l~~~~~~l~ 72 (440)
++|+.++++|. |.||.|+.. ++|++|+++++.+++ ..|. .+..+++|++|++++ +.+... +|..+++++
T Consensus 25 ~~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~--~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~ 101 (313)
T 1ogq_A 25 SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPS--SLANLPYLNFLYIGGINNLVGP-IPPAIAKLT 101 (313)
T ss_dssp TTCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCG--GGGGCTTCSEEEEEEETTEESC-CCGGGGGCT
T ss_pred cCCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccCh--hHhCCCCCCeeeCCCCCccccc-CChhHhcCC
Confidence 47998899999 999999865 799999999999998 7777 899999999999995 777766 899999999
Q ss_pred CCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCc
Q 045270 73 SLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASS 152 (440)
Q Consensus 73 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~ 152 (440)
+|++|++++|.+.+.+|..+.++++|++|++++|.+.+.++. .+..+++|++|++++|.+++.+|..++.++
T Consensus 102 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~------- 173 (313)
T 1ogq_A 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP-SISSLPNLVGITFDGNRISGAIPDSYGSFS------- 173 (313)
T ss_dssp TCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCG-GGGGCTTCCEEECCSSCCEEECCGGGGCCC-------
T ss_pred CCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCCh-HHhcCCCCCeEECcCCcccCcCCHHHhhhh-------
Confidence 999999999999988999999999999999999999866655 588999999999999999888998887663
Q ss_pred ccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCcccccee
Q 045270 153 SALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELL 232 (440)
Q Consensus 153 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 232 (440)
+.|++|++++|.+.+..|..+..++ |++|++++|.+. ...+..+..+++|+.|++++|.++...+. +..+++|++|
T Consensus 174 ~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~--~~~l~~L~~L 249 (313)
T 1ogq_A 174 KLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE-GDASVLFGSDKNTQKIHLAKNSLAFDLGK--VGLSKNLNGL 249 (313)
T ss_dssp TTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEE-ECCGGGCCTTSCCSEEECCSSEECCBGGG--CCCCTTCCEE
T ss_pred hcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCccc-CcCCHHHhcCCCCCEEECCCCceeeecCc--ccccCCCCEE
Confidence 4899999999999888888888887 999999999987 34556788899999999999988754433 5667888899
Q ss_pred ecCCCCCC-CCCC-CcccCcccEEeccCcccccccCcccccccccceeEEEccCcc
Q 045270 233 NLASCKLR-EIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNL 286 (440)
Q Consensus 233 ~l~~~~l~-~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 286 (440)
++++|.++ .+|. +..+++|+.|++++|.+++.+|.. ...++|+.+++++|.
T Consensus 250 ~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~---~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 250 DLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG---GNLQRFDVSAYANNK 302 (313)
T ss_dssp ECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS---TTGGGSCGGGTCSSS
T ss_pred ECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC---ccccccChHHhcCCC
Confidence 99888887 5665 788888888888888888777764 233446666666654
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.7e-33 Score=261.99 Aligned_cols=350 Identities=20% Similarity=0.230 Sum_probs=221.6
Q ss_pred CCCCCCCCCcc-eeeeeeCCCCceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEc
Q 045270 1 MQWRQSTDCCD-WSGVDCDEAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNL 79 (440)
Q Consensus 1 ~~w~~~~~~~~-~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l 79 (440)
+.|..+.+||. |.+..|.. +.+.+........... .-..++++++|+++++.+... .+..+..+++|++|++
T Consensus 4 ~~~~~~~~C~~~~~~~~c~~----~~~~i~~~~~~~~~~~--~~~~l~~l~~l~l~~~~l~~l-~~~~~~~l~~L~~L~L 76 (390)
T 3o6n_A 4 KPRQPEYKCIDSNLQYDCVF----YDVHIDMQTQDVYFGF--EDITLNNQKIVTFKNSTMRKL-PAALLDSFRQVELLNL 76 (390)
T ss_dssp ---CCEECBCC------EEE----ESCEECSSCCCCEESC--SSGGGCCCSEEEEESCEESEE-CTHHHHHCCCCSEEEC
T ss_pred CCCCCccceehhhhhhccce----eeeeeecccccccccc--cccccCCceEEEecCCchhhC-ChhHhcccccCcEEEC
Confidence 46888888887 44343321 1111111111111111 234567888888888877543 2334677888888888
Q ss_pred ccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEE
Q 045270 80 SDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLD 159 (440)
Q Consensus 80 ~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~ 159 (440)
++|.+.+..+.++..+++|++|++++|.+.+ ++...+..+++|++|++++|.+. .+|..++ ..+++|++|+
T Consensus 77 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~-------~~l~~L~~L~ 147 (390)
T 3o6n_A 77 NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLTVLVLERNDLS-SLPRGIF-------HNTPKLTTLS 147 (390)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCC-CCCTTTT-------TTCTTCCEEE
T ss_pred CCCcccccChhhccCCCCcCEEECCCCCCCc-CCHHHhcCCCCCCEEECCCCccC-cCCHHHh-------cCCCCCcEEE
Confidence 8888876666678888888888888888874 44446788888888888888887 5555432 2336888888
Q ss_pred cCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCC
Q 045270 160 LSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKL 239 (440)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 239 (440)
+++|.+....+..+..+++|++|++++|.+. ..+ +..+++|+.|++++|.+... ...+.|+.|++++|.+
T Consensus 148 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~---~~~l~~L~~L~l~~n~l~~~------~~~~~L~~L~l~~n~l 217 (390)
T 3o6n_A 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD---LSLIPSLFHANVSYNLLSTL------AIPIAVEELDASHNSI 217 (390)
T ss_dssp CCSSCCCBCCTTTTSSCTTCCEEECCSSCCS-BCC---GGGCTTCSEEECCSSCCSEE------ECCSSCSEEECCSSCC
T ss_pred CCCCccCccChhhccCCCCCCEEECCCCcCC-ccc---cccccccceeeccccccccc------CCCCcceEEECCCCee
Confidence 8888887666667888888888888888876 333 56778888888888877533 2345788889998888
Q ss_pred CCCCCCcccCcccEEeccCcccccccCcccccccccceeEEEccCcccccccCCccCCceeEEEcCCccccCcccCCCCC
Q 045270 240 REIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNN 319 (440)
Q Consensus 240 ~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 319 (440)
+.++. ...++|+.|++++|.+.+. ..+. ..++|++|++++|.+....+. ....+++
T Consensus 218 ~~~~~-~~~~~L~~L~l~~n~l~~~--~~l~--~l~~L~~L~Ls~n~l~~~~~~-------------------~~~~l~~ 273 (390)
T 3o6n_A 218 NVVRG-PVNVELTILKLQHNNLTDT--AWLL--NYPGLVEVDLSYNELEKIMYH-------------------PFVKMQR 273 (390)
T ss_dssp CEEEC-CCCSSCCEEECCSSCCCCC--GGGG--GCTTCSEEECCSSCCCEEESG-------------------GGTTCSS
T ss_pred eeccc-cccccccEEECCCCCCccc--HHHc--CCCCccEEECCCCcCCCcChh-------------------Hcccccc
Confidence 87765 3357888999988887642 2221 223344444444443332111 1112345
Q ss_pred ccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchhhhccccEEECCCC
Q 045270 320 LIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGN 399 (440)
Q Consensus 320 L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~L~~L~l~~n 399 (440)
|++|++++|.+. .++..+.. +++|+.|++++|.++ ..+..+..+++|++|++++|.++.++ ....++|+.|++++|
T Consensus 274 L~~L~L~~n~l~-~~~~~~~~-l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~-~~~~~~L~~L~l~~N 349 (390)
T 3o6n_A 274 LERLYISNNRLV-ALNLYGQP-IPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK-LSTHHTLKNLTLSHN 349 (390)
T ss_dssp CCEEECCSSCCC-EEECSSSC-CTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC-CCTTCCCSEEECCSS
T ss_pred CCEEECCCCcCc-ccCcccCC-CCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC-chhhccCCEEEcCCC
Confidence 566666666655 33433333 677777777777776 34555667777777777777777664 222445777777777
Q ss_pred cccCC
Q 045270 400 RLQGT 404 (440)
Q Consensus 400 ~~~~~ 404 (440)
++.+.
T Consensus 350 ~~~~~ 354 (390)
T 3o6n_A 350 DWDCN 354 (390)
T ss_dssp CEEHH
T ss_pred Cccch
Confidence 77654
No 34
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.3e-32 Score=264.41 Aligned_cols=298 Identities=18% Similarity=0.178 Sum_probs=151.6
Q ss_pred CCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEE
Q 045270 47 HYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYA 126 (440)
Q Consensus 47 ~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L 126 (440)
+++++|++++|.+... .+..|.++++|++|++++|.+.+..|.+|.++++|++|+|++|.+. .++...+..+++|++|
T Consensus 32 ~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 109 (477)
T 2id5_A 32 TETRLLDLGKNRIKTL-NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKL 109 (477)
T ss_dssp TTCSEEECCSSCCCEE-CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEE
T ss_pred CCCcEEECCCCccceE-CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEE
Confidence 3555666665555443 3445555566666666666555444555556666666666666555 3333345555666666
Q ss_pred EecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcE
Q 045270 127 VLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAK 206 (440)
Q Consensus 127 ~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 206 (440)
++++|.+....+..+..+ ++|++|++++|.+....+..|..+++|++|++++|.+. .++...+..+++|+.
T Consensus 110 ~Ls~n~i~~~~~~~~~~l--------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~ 180 (477)
T 2id5_A 110 DISENKIVILLDYMFQDL--------YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIV 180 (477)
T ss_dssp ECTTSCCCEECTTTTTTC--------TTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCE
T ss_pred ECCCCccccCChhHcccc--------ccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcE
Confidence 666665554444444332 45666666666555444455555666666666666554 444445556666666
Q ss_pred EEcCCCcccccCCccccCCccccceeecCCCCC-CCCCC-CcccCcccEEeccCcccccccCcccccccccceeEEEccC
Q 045270 207 LDLSYNSLAVDESSRNYSFSPMLELLNLASCKL-REIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSH 284 (440)
Q Consensus 207 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l-~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 284 (440)
|++++|.+....... +..+++|+.|++++|.. ..++. .....+|+.|++++|.+.+..+..+. ..++|+.|++++
T Consensus 181 L~l~~n~i~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~ 257 (477)
T 2id5_A 181 LRLRHLNINAIRDYS-FKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVR--HLVYLRFLNLSY 257 (477)
T ss_dssp EEEESCCCCEECTTC-SCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHT--TCTTCCEEECCS
T ss_pred EeCCCCcCcEeChhh-cccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhc--CccccCeeECCC
Confidence 666666555443332 45556666666666543 23332 33334666666666665432212221 122344444444
Q ss_pred cccccccCC--ccCCceeEEEcCCccccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhh
Q 045270 285 NLLVGFQGP--YSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPAS 362 (440)
Q Consensus 285 ~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 362 (440)
|.+....+. ..++ +|+.|++++|.+.+..+..+.. +++|+.|++++|.+++..+..
T Consensus 258 n~l~~~~~~~~~~l~---------------------~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~ 315 (477)
T 2id5_A 258 NPISTIEGSMLHELL---------------------RLQEIQLVGGQLAVVEPYAFRG-LNYLRVLNVSGNQLTTLEESV 315 (477)
T ss_dssp SCCCEECTTSCTTCT---------------------TCCEEECCSSCCSEECTTTBTT-CTTCCEEECCSSCCSCCCGGG
T ss_pred CcCCccChhhccccc---------------------cCCEEECCCCccceECHHHhcC-cccCCEEECCCCcCceeCHhH
Confidence 444333221 1233 3444444444444222222222 555555555555555444444
Q ss_pred hhccCCCCEEEcCCCcCC
Q 045270 363 LCNATTLSLLDLSNNSFM 380 (440)
Q Consensus 363 ~~~~~~L~~L~l~~n~i~ 380 (440)
|..+++|++|++++|.+.
T Consensus 316 ~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 316 FHSVGNLETLILDSNPLA 333 (477)
T ss_dssp BSCGGGCCEEECCSSCEE
T ss_pred cCCCcccCEEEccCCCcc
Confidence 555555555555555544
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.7e-32 Score=268.72 Aligned_cols=312 Identities=21% Similarity=0.248 Sum_probs=207.3
Q ss_pred ccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccce
Q 045270 45 SLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLV 124 (440)
Q Consensus 45 ~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~ 124 (440)
.+++++.++++++.+... .+..+..+++|++|++++|.+.+..|..|..+++|++|+|++|.+.+ ++...++.+++|+
T Consensus 49 ~l~~l~~l~l~~~~l~~l-p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-LPPHVFQNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCEESEE-CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCC
T ss_pred cCCCceEEEeeCCCCCCc-CHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC-CCHHHHcCCCCCC
Confidence 567888888888777543 33446778888888888888876666678888888888888888874 4444578888888
Q ss_pred EEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCC
Q 045270 125 YAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNL 204 (440)
Q Consensus 125 ~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 204 (440)
+|++++|.+. .+|..++ ..+++|++|++++|.+.+..+..+..+++|++|++++|.+. ..+ +..+++|
T Consensus 127 ~L~L~~n~l~-~l~~~~~-------~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~---~~~l~~L 194 (597)
T 3oja_B 127 VLVLERNDLS-SLPRGIF-------HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD---LSLIPSL 194 (597)
T ss_dssp EEECCSSCCC-CCCTTTT-------TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS-BCC---GGGCTTC
T ss_pred EEEeeCCCCC-CCCHHHh-------ccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC-CcC---hhhhhhh
Confidence 8888888887 4554432 23368888888888887666667888888888888888876 333 4567888
Q ss_pred cEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEEccC
Q 045270 205 AKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSH 284 (440)
Q Consensus 205 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 284 (440)
+.|++++|.+... ...+.|+.|++++|.+..++. ...++|+.|++++|.+++. ..+. ..++|+.|++++
T Consensus 195 ~~L~l~~n~l~~l------~~~~~L~~L~ls~n~l~~~~~-~~~~~L~~L~L~~n~l~~~--~~l~--~l~~L~~L~Ls~ 263 (597)
T 3oja_B 195 FHANVSYNLLSTL------AIPIAVEELDASHNSINVVRG-PVNVELTILKLQHNNLTDT--AWLL--NYPGLVEVDLSY 263 (597)
T ss_dssp SEEECCSSCCSEE------ECCTTCSEEECCSSCCCEEEC-SCCSCCCEEECCSSCCCCC--GGGG--GCTTCSEEECCS
T ss_pred hhhhcccCccccc------cCCchhheeeccCCccccccc-ccCCCCCEEECCCCCCCCC--hhhc--cCCCCCEEECCC
Confidence 8888888876532 334568888888888877665 2236788888888887642 2222 223355555555
Q ss_pred cccccccCCccCCceeEEEcCCccccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhh
Q 045270 285 NLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLC 364 (440)
Q Consensus 285 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 364 (440)
|.+....+. ....+++|+.|+|++|.+. .+|..+.. +|+|+.|++++|.++ .+|..+.
T Consensus 264 N~l~~~~~~-------------------~~~~l~~L~~L~Ls~N~l~-~l~~~~~~-l~~L~~L~Ls~N~l~-~i~~~~~ 321 (597)
T 3oja_B 264 NELEKIMYH-------------------PFVKMQRLERLYISNNRLV-ALNLYGQP-IPTLKVLDLSHNHLL-HVERNQP 321 (597)
T ss_dssp SCCCEEESG-------------------GGTTCSSCCEEECTTSCCC-EEECSSSC-CTTCCEEECCSSCCC-CCGGGHH
T ss_pred CccCCCCHH-------------------HhcCccCCCEEECCCCCCC-CCCccccc-CCCCcEEECCCCCCC-ccCcccc
Confidence 444433211 0111345555556666555 23433333 677777777777776 4555666
Q ss_pred ccCCCCEEEcCCCcCCCCCchhhhccccEEECCCCcccCC
Q 045270 365 NATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGT 404 (440)
Q Consensus 365 ~~~~L~~L~l~~n~i~~~~~~~~~~~L~~L~l~~n~~~~~ 404 (440)
.+++|+.|++++|.+..++. ...++|+.|++++|++.+.
T Consensus 322 ~l~~L~~L~L~~N~l~~~~~-~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 322 QFDRLENLYLDHNSIVTLKL-STHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp HHTTCSEEECCSSCCCCCCC-CTTCCCSEEECCSSCEEHH
T ss_pred cCCCCCEEECCCCCCCCcCh-hhcCCCCEEEeeCCCCCCh
Confidence 77777777777777766642 2234577777777776643
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.8e-32 Score=263.41 Aligned_cols=318 Identities=21% Similarity=0.221 Sum_probs=238.6
Q ss_pred CCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEEe
Q 045270 49 LRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVL 128 (440)
Q Consensus 49 L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l 128 (440)
-+.++.++..+.. +|..+. +++++|++++|.+.+..+..|.++++|++|+|++|.+.+ +....+..+++|++|++
T Consensus 13 ~~~v~c~~~~l~~--ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~L~L 87 (477)
T 2id5_A 13 DRAVLCHRKRFVA--VPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA-VEPGAFNNLFNLRTLGL 87 (477)
T ss_dssp TTEEECCSCCCSS--CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcCc--CCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCE-eChhhhhCCccCCEEEC
Confidence 3567777666643 566554 689999999999987778889999999999999999884 43446889999999999
Q ss_pred cCCccCCCCCc-cccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEE
Q 045270 129 SDNSLNGSIPR-SMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKL 207 (440)
Q Consensus 129 ~~~~~~~~~~~-~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 207 (440)
++|.+. .+|. .+. .+++|++|++++|.+....+..|..+++|++|++++|.+. .+....+..+++|+.|
T Consensus 88 ~~n~l~-~~~~~~~~--------~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L 157 (477)
T 2id5_A 88 RSNRLK-LIPLGVFT--------GLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQL 157 (477)
T ss_dssp CSSCCC-SCCTTSST--------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCC-EECTTSSTTCTTCCEE
T ss_pred CCCcCC-ccCccccc--------CCCCCCEEECCCCccccCChhHccccccCCEEECCCCccc-eeChhhccCCCCCCEE
Confidence 999988 4444 343 3478999999999988666778888999999999998887 4555667888889999
Q ss_pred EcCCCcccccCCccccCCccccceeecCCCCCCCCCC--CcccCcccEEeccCcccccccCcccccccccceeEEEccCc
Q 045270 208 DLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHN 285 (440)
Q Consensus 208 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 285 (440)
++++|.++...... +..+++|+.|++++|.+..++. +..+++|+.|++++|...+..+...... .+|+.|++++|
T Consensus 158 ~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~--~~L~~L~l~~n 234 (477)
T 2id5_A 158 TLEKCNLTSIPTEA-LSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG--LNLTSLSITHC 234 (477)
T ss_dssp EEESCCCSSCCHHH-HTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTT--CCCSEEEEESS
T ss_pred ECCCCcCcccChhH-hcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccC--ccccEEECcCC
Confidence 99888887554433 6678888888888888876655 7788888888888876655555443221 13555555555
Q ss_pred ccccccCCccCCceeEEEcCCccccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhc
Q 045270 286 LLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCN 365 (440)
Q Consensus 286 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 365 (440)
.++.++.. ....+++|+.|++++|.+. .++...+..+++|+.|++++|.+++..+..|..
T Consensus 235 ~l~~~~~~-------------------~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 294 (477)
T 2id5_A 235 NLTAVPYL-------------------AVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG 294 (477)
T ss_dssp CCCSCCHH-------------------HHTTCTTCCEEECCSSCCC-EECTTSCTTCTTCCEEECCSSCCSEECTTTBTT
T ss_pred cccccCHH-------------------HhcCccccCeeECCCCcCC-ccChhhccccccCCEEECCCCccceECHHHhcC
Confidence 44432210 1223467888888888877 444444444899999999999998888888999
Q ss_pred cCCCCEEEcCCCcCCCCCchhh--hccccEEECCCCcccCC
Q 045270 366 ATTLSLLDLSNNSFMKKSDAFL--NCLLQTLDLNGNRLQGT 404 (440)
Q Consensus 366 ~~~L~~L~l~~n~i~~~~~~~~--~~~L~~L~l~~n~~~~~ 404 (440)
+++|++|++++|.++.++...+ ..+|+.|++++|++.+.
T Consensus 295 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~ 335 (477)
T 2id5_A 295 LNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACD 335 (477)
T ss_dssp CTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECS
T ss_pred cccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCc
Confidence 9999999999999998876554 45699999999988854
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.3e-31 Score=254.23 Aligned_cols=317 Identities=22% Similarity=0.252 Sum_probs=250.9
Q ss_pred cccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccc
Q 045270 42 SLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLL 121 (440)
Q Consensus 42 ~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~ 121 (440)
.++.+++|++|++++|.+.. +| .++.+++|++|++++|.+.+ +| +..+++|++|++++|.+.+. + ++.++
T Consensus 37 ~~~~l~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~---~~~l~ 106 (457)
T 3bz5_A 37 SEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D---VTPLT 106 (457)
T ss_dssp EHHHHTTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C---CTTCT
T ss_pred ChhHcCCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e---cCCCC
Confidence 68899999999999999865 45 68899999999999999985 44 88999999999999998853 2 78899
Q ss_pred cceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcC
Q 045270 122 NLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNL 201 (440)
Q Consensus 122 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 201 (440)
+|++|++++|.+++ ++ +. .+++|++|++++|.+.+ + .+..+++|++|++++|...+.+ .+..+
T Consensus 107 ~L~~L~L~~N~l~~-l~--~~--------~l~~L~~L~l~~N~l~~-l--~l~~l~~L~~L~l~~n~~~~~~---~~~~l 169 (457)
T 3bz5_A 107 KLTYLNCDTNKLTK-LD--VS--------QNPLLTYLNCARNTLTE-I--DVSHNTQLTELDCHLNKKITKL---DVTPQ 169 (457)
T ss_dssp TCCEEECCSSCCSC-CC--CT--------TCTTCCEEECTTSCCSC-C--CCTTCTTCCEEECTTCSCCCCC---CCTTC
T ss_pred cCCEEECCCCcCCe-ec--CC--------CCCcCCEEECCCCccce-e--ccccCCcCCEEECCCCCccccc---ccccC
Confidence 99999999999984 44 43 44799999999999985 4 3788999999999999654444 36788
Q ss_pred CCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEE
Q 045270 202 GNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLN 281 (440)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 281 (440)
++|+.|++++|.++... +..+++|+.|++++|.++.++ +..+++|+.|++++|.+.+ +| +. ..++|+.|+
T Consensus 170 ~~L~~L~ls~n~l~~l~----l~~l~~L~~L~l~~N~l~~~~-l~~l~~L~~L~Ls~N~l~~-ip--~~--~l~~L~~L~ 239 (457)
T 3bz5_A 170 TQLTTLDCSFNKITELD----VSQNKLLNRLNCDTNNITKLD-LNQNIQLTFLDCSSNKLTE-ID--VT--PLTQLTYFD 239 (457)
T ss_dssp TTCCEEECCSSCCCCCC----CTTCTTCCEEECCSSCCSCCC-CTTCTTCSEEECCSSCCSC-CC--CT--TCTTCSEEE
T ss_pred CcCCEEECCCCccceec----cccCCCCCEEECcCCcCCeec-cccCCCCCEEECcCCcccc-cC--cc--ccCCCCEEE
Confidence 99999999999987653 667889999999999999885 8889999999999999986 44 32 445699999
Q ss_pred ccCcccccccCCccCCceeEEEcCCccccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchh
Q 045270 282 LSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPA 361 (440)
Q Consensus 282 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 361 (440)
+++|.++..+ ...+++|+.++++.+ +|+.|++++|.+.+.+|. ..+++|+.|++++|...+..|.
T Consensus 240 l~~N~l~~~~-~~~l~~L~~L~l~~n-----------~L~~L~l~~n~~~~~~~~---~~l~~L~~L~Ls~n~~l~~l~~ 304 (457)
T 3bz5_A 240 CSVNPLTELD-VSTLSKLTTLHCIQT-----------DLLEIDLTHNTQLIYFQA---EGCRKIKELDVTHNTQLYLLDC 304 (457)
T ss_dssp CCSSCCSCCC-CTTCTTCCEEECTTC-----------CCSCCCCTTCTTCCEEEC---TTCTTCCCCCCTTCTTCCEEEC
T ss_pred eeCCcCCCcC-HHHCCCCCEEeccCC-----------CCCEEECCCCccCCcccc---cccccCCEEECCCCcccceecc
Confidence 9999998875 456889999998775 578889999987767663 2389999999999987666553
Q ss_pred hhhccCCCCEEEcCCCcCCCCCchhhhccccEEECCCCcccCCchhhhhcCCCCcEEECCCCcccc
Q 045270 362 SLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSD 427 (440)
Q Consensus 362 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 427 (440)
..++|+.|++++| ++|+.|++++|++++. + ++++++|+.|++++|++++
T Consensus 305 ---~~~~L~~L~l~~~-----------~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 305 ---QAAGITELDLSQN-----------PKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp ---TTCCCSCCCCTTC-----------TTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB
T ss_pred ---CCCcceEechhhc-----------ccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC
Confidence 2345555555554 3466666666666653 2 5666666666666666654
No 38
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.4e-31 Score=244.93 Aligned_cols=308 Identities=20% Similarity=0.269 Sum_probs=191.7
Q ss_pred cccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccc
Q 045270 42 SLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLL 121 (440)
Q Consensus 42 ~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~ 121 (440)
.+..+++|++|+++++.+.. ++ .+..+++|++|++++|.+. .++. +..+++|++|++++|.+.+ ++ .+..++
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~--~~-~~~~~~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~L~~n~i~~-~~--~~~~l~ 110 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVAS--IQ-GIEYLTNLEYLNLNGNQIT-DISP-LSNLVKLTNLYIGTNKITD-IS--ALQNLT 110 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCC--CT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCC-CG--GGTTCT
T ss_pred cchhcccccEEEEeCCcccc--ch-hhhhcCCccEEEccCCccc-cchh-hhcCCcCCEEEccCCcccC-ch--HHcCCC
Confidence 35566777777777776643 23 3666777777777777766 3333 6777777777777776663 33 366677
Q ss_pred cceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcC
Q 045270 122 NLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNL 201 (440)
Q Consensus 122 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 201 (440)
+|++|++++|.+. .++. + ..+++|++|++++|..... +..+..+++|++|++++|.+. ..+. +..+
T Consensus 111 ~L~~L~l~~n~i~-~~~~-~--------~~l~~L~~L~l~~n~~~~~-~~~~~~l~~L~~L~l~~~~~~-~~~~--~~~l 176 (347)
T 4fmz_A 111 NLRELYLNEDNIS-DISP-L--------ANLTKMYSLNLGANHNLSD-LSPLSNMTGLNYLTVTESKVK-DVTP--IANL 176 (347)
T ss_dssp TCSEEECTTSCCC-CCGG-G--------TTCTTCCEEECTTCTTCCC-CGGGTTCTTCCEEECCSSCCC-CCGG--GGGC
T ss_pred cCCEEECcCCccc-Cchh-h--------ccCCceeEEECCCCCCccc-ccchhhCCCCcEEEecCCCcC-Cchh--hccC
Confidence 7777777777665 2332 2 2335677777776654422 233666667777777766664 2221 5566
Q ss_pred CCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEE
Q 045270 202 GNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLN 281 (440)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 281 (440)
++|+.|++++|.+..... +..+++|+.+++++|.++.++.+..+++|+.|++++|.+.+..+ + ...++|+.|+
T Consensus 177 ~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~--~--~~l~~L~~L~ 249 (347)
T 4fmz_A 177 TDLYSLSLNYNQIEDISP---LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP--L--ANLSQLTWLE 249 (347)
T ss_dssp TTCSEEECTTSCCCCCGG---GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--G--TTCTTCCEEE
T ss_pred CCCCEEEccCCccccccc---ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc--h--hcCCCCCEEE
Confidence 666666666666554332 44556666666666666655555566666666666665543222 1 1223344444
Q ss_pred ccCcccccccCCccCCceeEEEcCCccccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchh
Q 045270 282 LSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPA 361 (440)
Q Consensus 282 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 361 (440)
+++|.++.+.. ...+++|+.|++++|.+. .++ . +..+++|+.|++++|.+++..+.
T Consensus 250 l~~n~l~~~~~---------------------~~~l~~L~~L~l~~n~l~-~~~-~-~~~l~~L~~L~L~~n~l~~~~~~ 305 (347)
T 4fmz_A 250 IGTNQISDINA---------------------VKDLTKLKMLNVGSNQIS-DIS-V-LNNLSQLNSLFLNNNQLGNEDME 305 (347)
T ss_dssp CCSSCCCCCGG---------------------GTTCTTCCEEECCSSCCC-CCG-G-GGGCTTCSEEECCSSCCCGGGHH
T ss_pred CCCCccCCChh---------------------HhcCCCcCEEEccCCccC-CCh-h-hcCCCCCCEEECcCCcCCCcChh
Confidence 44444433222 222456777777777776 332 2 33388899999999988888888
Q ss_pred hhhccCCCCEEEcCCCcCCCCCchhhhccccEEECCCCccc
Q 045270 362 SLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQ 402 (440)
Q Consensus 362 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~~L~~L~l~~n~~~ 402 (440)
.+..+++|++|++++|.+++.+.....++|++|++++|.++
T Consensus 306 ~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 306 VIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHHTCTTCSEEECCSSSCCCCGGGGGCTTCSEESSSCC---
T ss_pred HhhccccCCEEEccCCccccccChhhhhccceeehhhhccc
Confidence 88889999999999999888866555677999999998875
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=6.2e-31 Score=242.17 Aligned_cols=307 Identities=21% Similarity=0.290 Sum_probs=223.3
Q ss_pred chhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCcccccccc
Q 045270 67 KLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPI 146 (440)
Q Consensus 67 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 146 (440)
.+..+++|++|+++++.+. .++ .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+. .++ .+
T Consensus 39 ~~~~l~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i~~-~~~--~~~l~~L~~L~L~~n~i~-~~~-~~----- 106 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQITD-ISP--LSNLVKLTNLYIGTNKIT-DIS-AL----- 106 (347)
T ss_dssp CHHHHTTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSCCC-CCG-GG-----
T ss_pred cchhcccccEEEEeCCccc-cch-hhhhcCCccEEEccCCcccc-chh--hhcCCcCCEEEccCCccc-Cch-HH-----
Confidence 4567889999999999887 444 48889999999999998873 433 788889999999998886 333 23
Q ss_pred ccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCc
Q 045270 147 FSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFS 226 (440)
Q Consensus 147 l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 226 (440)
..+++|++|++++|.+.. .+. +..+++|++|++++|......+ .+..+++|+.|++++|.+..... +..+
T Consensus 107 ---~~l~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~l~~n~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~---~~~l 176 (347)
T 4fmz_A 107 ---QNLTNLRELYLNEDNISD-ISP-LANLTKMYSLNLGANHNLSDLS--PLSNMTGLNYLTVTESKVKDVTP---IANL 176 (347)
T ss_dssp ---TTCTTCSEEECTTSCCCC-CGG-GTTCTTCCEEECTTCTTCCCCG--GGTTCTTCCEEECCSSCCCCCGG---GGGC
T ss_pred ---cCCCcCCEEECcCCcccC-chh-hccCCceeEEECCCCCCccccc--chhhCCCCcEEEecCCCcCCchh---hccC
Confidence 344788888888888873 443 7778888888888885543333 36778888888888887754433 5567
Q ss_pred cccceeecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEEccCcccccccCCccCCceeEEEcCC
Q 045270 227 PMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSS 306 (440)
Q Consensus 227 ~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~ 306 (440)
++|+.|++++|.++.++.+..+++|+.+++++|.+.+..+ + ...++|++|++++|.++..++
T Consensus 177 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~--~~~~~L~~L~l~~n~l~~~~~-------------- 238 (347)
T 4fmz_A 177 TDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--V--ANMTRLNSLKIGNNKITDLSP-------------- 238 (347)
T ss_dssp TTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--G--GGCTTCCEEECCSSCCCCCGG--------------
T ss_pred CCCCEEEccCCcccccccccCCCccceeecccCCCCCCch--h--hcCCcCCEEEccCCccCCCcc--------------
Confidence 7788888888877777667777777777777776654322 2 123335555555555444332
Q ss_pred ccccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchh
Q 045270 307 HQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAF 386 (440)
Q Consensus 307 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~ 386 (440)
...+++|++|++++|.+. .++ . +..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+...
T Consensus 239 -------~~~l~~L~~L~l~~n~l~-~~~-~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~ 306 (347)
T 4fmz_A 239 -------LANLSQLTWLEIGTNQIS-DIN-A-VKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEV 306 (347)
T ss_dssp -------GTTCTTCCEEECCSSCCC-CCG-G-GTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHH
T ss_pred -------hhcCCCCCEEECCCCccC-CCh-h-HhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhH
Confidence 223457777888888776 332 2 33489999999999999865 46889999999999999998875443
Q ss_pred h--hccccEEECCCCcccCCchhhhhcCCCCcEEECCCCcccc
Q 045270 387 L--NCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSD 427 (440)
Q Consensus 387 ~--~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 427 (440)
+ .++|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 307 l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~~ 347 (347)
T 4fmz_A 307 IGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIKK 347 (347)
T ss_dssp HHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC----
T ss_pred hhccccCCEEEccCCccccccC--hhhhhccceeehhhhcccC
Confidence 3 4679999999999997766 8899999999999999863
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.2e-31 Score=249.04 Aligned_cols=310 Identities=22% Similarity=0.216 Sum_probs=226.1
Q ss_pred cCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccc
Q 045270 70 NISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSN 149 (440)
Q Consensus 70 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~ 149 (440)
.++++++|+++++.+....+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+.+..|..+..+
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l----- 116 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV----- 116 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-----
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCC-----
Confidence 4688999999999888444444688899999999999887 4444468888899999999988886556556544
Q ss_pred cCcccccEEEcCCCccCCcccc-ccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccc
Q 045270 150 ASSSALDTLDLSGNRLRGSIPV-SVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPM 228 (440)
Q Consensus 150 ~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 228 (440)
++|++|++++|.+. .+|. .|..+++|++|++++|.+. .++...+..+++|+.|++++|.++... ...+++
T Consensus 117 ---~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~l~~ 187 (390)
T 3o6n_A 117 ---PLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPS 187 (390)
T ss_dssp ---TTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTSSCTTCCEEECCSSCCSBCC----GGGCTT
T ss_pred ---CCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccC-ccChhhccCCCCCCEEECCCCcCCccc----cccccc
Confidence 68888888888887 4444 3577888888888888876 455556777888888888888776442 345667
Q ss_pred cceeecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEEccCcccccccCCccCCceeEEEcCCcc
Q 045270 229 LELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQ 308 (440)
Q Consensus 229 L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 308 (440)
|+.+++++|.++.++ ..+.|+.|++++|.+... +... .++|+.|++++|.++....
T Consensus 188 L~~L~l~~n~l~~~~---~~~~L~~L~l~~n~l~~~-~~~~----~~~L~~L~l~~n~l~~~~~---------------- 243 (390)
T 3o6n_A 188 LFHANVSYNLLSTLA---IPIAVEELDASHNSINVV-RGPV----NVELTILKLQHNNLTDTAW---------------- 243 (390)
T ss_dssp CSEEECCSSCCSEEE---CCSSCSEEECCSSCCCEE-ECCC----CSSCCEEECCSSCCCCCGG----------------
T ss_pred cceeecccccccccC---CCCcceEEECCCCeeeec-cccc----cccccEEECCCCCCcccHH----------------
Confidence 777777777665543 334667777777666432 2111 1235555555544443221
Q ss_pred ccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchhh-
Q 045270 309 LRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFL- 387 (440)
Q Consensus 309 ~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~- 387 (440)
...+++|++|++++|.+.+..+..+.. +++|+.|++++|.+++ .+..+..+++|++|++++|++..++..+.
T Consensus 244 -----l~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 316 (390)
T 3o6n_A 244 -----LLNYPGLVEVDLSYNELEKIMYHPFVK-MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQ 316 (390)
T ss_dssp -----GGGCTTCSEEECCSSCCCEEESGGGTT-CSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHH
T ss_pred -----HcCCCCccEEECCCCcCCCcChhHccc-cccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcceecCccccc
Confidence 122467888888888887555555555 9999999999999985 56667789999999999999998865543
Q ss_pred hccccEEECCCCcccCCchhhhhcCCCCcEEECCCCccccc
Q 045270 388 NCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDK 428 (440)
Q Consensus 388 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 428 (440)
.++|+.|++++|+++... +..+++|+.|++++|++...
T Consensus 317 l~~L~~L~L~~N~i~~~~---~~~~~~L~~L~l~~N~~~~~ 354 (390)
T 3o6n_A 317 FDRLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN 354 (390)
T ss_dssp HTTCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred cCcCCEEECCCCccceeC---chhhccCCEEEcCCCCccch
Confidence 577999999999998653 67789999999999999754
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.97 E-value=2.5e-30 Score=254.70 Aligned_cols=310 Identities=22% Similarity=0.188 Sum_probs=233.3
Q ss_pred CCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCcccccccccccc
Q 045270 71 ISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNA 150 (440)
Q Consensus 71 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~ 150 (440)
+.+++.++++++.+....+..+..+++|++|++++|.+.+ ++...+..+++|++|++++|.+.+..|..+..+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l------ 122 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEE-IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNV------ 122 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC------
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCC-CChHHhcCCCCCCEEECCCCcCCCCCHHHHcCC------
Confidence 6789999999999885555557889999999999999884 444468899999999999999886666555544
Q ss_pred CcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccc
Q 045270 151 SSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLE 230 (440)
Q Consensus 151 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 230 (440)
++|++|++++|.+....+..|..+++|++|++++|.+. ..++..+..+++|+.|++++|.++... ...+++|+
T Consensus 123 --~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~----~~~l~~L~ 195 (597)
T 3oja_B 123 --PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTHVD----LSLIPSLF 195 (597)
T ss_dssp --TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECTTSCCSBCC----GGGCTTCS
T ss_pred --CCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCC-CCChhhhhcCCcCcEEECcCCCCCCcC----hhhhhhhh
Confidence 68999999999888444444678889999999988887 555566788888888888888876543 44567778
Q ss_pred eeecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEEccCcccccccCCccCCceeEEEcCCcccc
Q 045270 231 LLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLR 310 (440)
Q Consensus 231 ~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 310 (440)
.|++++|.++.++ ..+.|+.|++++|.+....+.. .++|+.|++++|.++....
T Consensus 196 ~L~l~~n~l~~l~---~~~~L~~L~ls~n~l~~~~~~~-----~~~L~~L~L~~n~l~~~~~------------------ 249 (597)
T 3oja_B 196 HANVSYNLLSTLA---IPIAVEELDASHNSINVVRGPV-----NVELTILKLQHNNLTDTAW------------------ 249 (597)
T ss_dssp EEECCSSCCSEEE---CCTTCSEEECCSSCCCEEECSC-----CSCCCEEECCSSCCCCCGG------------------
T ss_pred hhhcccCcccccc---CCchhheeeccCCccccccccc-----CCCCCEEECCCCCCCCChh------------------
Confidence 8888777666543 3456777777777664322211 1235555555554443211
Q ss_pred CcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchhh-hc
Q 045270 311 GNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFL-NC 389 (440)
Q Consensus 311 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~-~~ 389 (440)
...+++|+.|++++|.+.+..|..+.. +++|+.|++++|.+++ .+..+..+++|+.|++++|.+..+|..+. .+
T Consensus 250 ---l~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~ 324 (597)
T 3oja_B 250 ---LLNYPGLVEVDLSYNELEKIMYHPFVK-MQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFD 324 (597)
T ss_dssp ---GGGCTTCSEEECCSSCCCEEESGGGTT-CSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCCCGGGHHHHT
T ss_pred ---hccCCCCCEEECCCCccCCCCHHHhcC-ccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCccCcccccCC
Confidence 122467888888888888666666655 9999999999999985 56667789999999999999998876544 67
Q ss_pred cccEEECCCCcccCCchhhhhcCCCCcEEECCCCccccc
Q 045270 390 LLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDK 428 (440)
Q Consensus 390 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 428 (440)
+|+.|++++|.+.+.. +..+++|+.|++++|++.+.
T Consensus 325 ~L~~L~L~~N~l~~~~---~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 325 RLENLYLDHNSIVTLK---LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp TCSEEECCSSCCCCCC---CCTTCCCSEEECCSSCEEHH
T ss_pred CCCEEECCCCCCCCcC---hhhcCCCCEEEeeCCCCCCh
Confidence 7999999999998653 66789999999999999754
No 42
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=3.4e-32 Score=260.60 Aligned_cols=385 Identities=20% Similarity=0.174 Sum_probs=228.3
Q ss_pred CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCC---ccccchhcCCCCcEEEcccCccccCCccccc-ccc
Q 045270 21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGT---QIPSKLANISSLTYLNLSDAGFAGHIPLQIS-SMA 96 (440)
Q Consensus 21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~---~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~ 96 (440)
+++++||++++.++..... ..+..+++|++|++++|.+... .++..+..+++|++|++++|.+.+..+..+. .++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~-~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWA-ELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESCCCCHHHHH-HHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhcccCchhHH-HHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 4688999999988754332 1378899999999999987643 2566778889999999999988754444433 344
Q ss_pred ----cCceecCCCCcccCcc---chhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCc-
Q 045270 97 ----RLVALDFSFNQFSGSI---SSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGS- 168 (440)
Q Consensus 97 ----~L~~L~L~~~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~- 168 (440)
+|++|++++|.+.+.. ....+..+++|++|++++|.+.+..+..+.... ....++|++|++++|.+...
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l---~~~~~~L~~L~L~~n~l~~~~ 158 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGL---LDPQCRLEKLQLEYCSLSAAS 158 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHH---TSTTCCCCEEECTTSCCBGGG
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHH---hcCCCcceEEECCCCCCCHHH
Confidence 6999999999877421 233577888888888888887644444333210 01234688888888877642
Q ss_pred ---cccccccccCccEEeccccccccccchhhHh-----cCCCCcEEEcCCCcccccCC---ccccCCccccceeecCCC
Q 045270 169 ---IPVSVFELKKLTSLLLSSNNLHGTVQLDKIL-----NLGNLAKLDLSYNSLAVDES---SRNYSFSPMLELLNLASC 237 (440)
Q Consensus 169 ---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~~L~l~~~ 237 (440)
++..+..+++|++|++++|.+. ......+. ..++|+.|++++|.++.... ...+..+++|++|++++|
T Consensus 159 ~~~l~~~l~~~~~L~~L~L~~n~i~-~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 237 (461)
T 1z7x_W 159 CEPLASVLRAKPDFKELTVSNNDIN-EAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN 237 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCH-HHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS
T ss_pred HHHHHHHHhhCCCCCEEECcCCCcc-hHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC
Confidence 2444555678888888877765 22222222 24577777777776654321 111334566666666666
Q ss_pred CCCCCC------C-CcccCcccEEeccCcccccccCcccccccccceeEEEccCcccccccCCccCCceeEEEcCCcccc
Q 045270 238 KLREIP------N-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLR 310 (440)
Q Consensus 238 ~l~~l~------~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 310 (440)
.++... . +..+++|+.|++++|.+++.....+.. ....+++|++|++++|.+.
T Consensus 238 ~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~--------------------~l~~~~~L~~L~Ls~n~i~ 297 (461)
T 1z7x_W 238 KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCR--------------------VLRAKESLKELSLAGNELG 297 (461)
T ss_dssp BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH--------------------HHHHCTTCCEEECTTCCCH
T ss_pred cCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHH--------------------HHhhCCCcceEECCCCCCc
Confidence 554321 1 224556666666666554321111100 0012344555555555443
Q ss_pred Cc--------ccCCCCCccEEEccCCccccc----CCccccccCCCcceEecccccccccchhhhhc-----cCCCCEEE
Q 045270 311 GN--------IHQLPNNLIYIDFSNNNFTSS----IPADTGNFMPRLRYFCAANNGLTGIIPASLCN-----ATTLSLLD 373 (440)
Q Consensus 311 ~~--------~~~~~~~L~~L~L~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~-----~~~L~~L~ 373 (440)
+. .....++|++|++++|.+++. ++..+.. +++|++|++++|.+++..+..+.. .++|++|+
T Consensus 298 ~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~-~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 376 (461)
T 1z7x_W 298 DEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ-NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW 376 (461)
T ss_dssp HHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHH-CSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred hHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhh-CCCccEEEccCCccccccHHHHHHHHcCCCCceEEEE
Confidence 21 111224677777777766533 1222222 677888888887776554444432 56788888
Q ss_pred cCCCcCCC-----CCchhh-hccccEEECCCCcccCCchhhhh-----cCCCCcEEECCCCcccccCcc
Q 045270 374 LSNNSFMK-----KSDAFL-NCLLQTLDLNGNRLQGTVPKSIA-----NCKMLEVLNLGNNQFSDKFPC 431 (440)
Q Consensus 374 l~~n~i~~-----~~~~~~-~~~L~~L~l~~n~~~~~~~~~~~-----~l~~L~~L~l~~n~~~~~~~~ 431 (440)
+++|.+++ ++..+. .++|++|++++|++++.....+. ...+|+.|++.++.+....++
T Consensus 377 L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~ 445 (461)
T 1z7x_W 377 LADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMED 445 (461)
T ss_dssp CTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHH
T ss_pred CCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHH
Confidence 88887764 232222 34588888888877765443332 234577777777766554443
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=3.8e-28 Score=221.77 Aligned_cols=288 Identities=22% Similarity=0.266 Sum_probs=155.8
Q ss_pred CCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEE
Q 045270 48 YLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAV 127 (440)
Q Consensus 48 ~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~ 127 (440)
+++.++++++.+.. +|..+. +++++|++++|.+.+..+..+.++++|++|++++|.+.+ +....+..+++|++|+
T Consensus 32 ~l~~l~~~~~~l~~--lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 32 HLRVVQCSDLGLEK--VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK-ISPGAFAPLVKLERLY 106 (330)
T ss_dssp ETTEEECTTSCCCS--CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCC-BCTTTTTTCTTCCEEE
T ss_pred CCeEEEecCCCccc--cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCe-eCHHHhcCCCCCCEEE
Confidence 56666666555532 444333 456666666666654444455566666666666665552 2222345555555555
Q ss_pred ecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEE
Q 045270 128 LSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKL 207 (440)
Q Consensus 128 l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 207 (440)
+++|.++ .+|..+. ++|++|++++|.+. ..+...+..+++|+.|
T Consensus 107 Ls~n~l~-~l~~~~~----------------------------------~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L 150 (330)
T 1xku_A 107 LSKNQLK-ELPEKMP----------------------------------KTLQELRVHENEIT-KVRKSVFNGLNQMIVV 150 (330)
T ss_dssp CCSSCCS-BCCSSCC----------------------------------TTCCEEECCSSCCC-BBCHHHHTTCTTCCEE
T ss_pred CCCCcCC-ccChhhc----------------------------------ccccEEECCCCccc-ccCHhHhcCCccccEE
Confidence 5555544 3333221 34444555444444 3333444555555555
Q ss_pred EcCCCccccc-CCccccCCccccceeecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEEccCcc
Q 045270 208 DLSYNSLAVD-ESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNL 286 (440)
Q Consensus 208 ~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 286 (440)
++++|.+... .....+..+++|+.|++++|.++.+|.. ..++|+.|++++|.+.+..+..+..
T Consensus 151 ~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~-~~~~L~~L~l~~n~l~~~~~~~~~~--------------- 214 (330)
T 1xku_A 151 ELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG-LPPSLTELHLDGNKITKVDAASLKG--------------- 214 (330)
T ss_dssp ECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS-CCTTCSEEECTTSCCCEECTGGGTT---------------
T ss_pred ECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcc-ccccCCEEECCCCcCCccCHHHhcC---------------
Confidence 5555554321 1111244455566666666666555541 1256666666666655433333211
Q ss_pred cccccCCccCCceeEEEcCCccccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhcc
Q 045270 287 LVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNA 366 (440)
Q Consensus 287 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~ 366 (440)
+++|++|++++|.+.+..+..+.. +++|++|++++|.++ ..|..+..+
T Consensus 215 ------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~-~lp~~l~~l 262 (330)
T 1xku_A 215 ------------------------------LNNLAKLGLSFNSISAVDNGSLAN-TPHLRELHLNNNKLV-KVPGGLADH 262 (330)
T ss_dssp ------------------------------CTTCCEEECCSSCCCEECTTTGGG-STTCCEEECCSSCCS-SCCTTTTTC
T ss_pred ------------------------------CCCCCEEECCCCcCceeChhhccC-CCCCCEEECCCCcCc-cCChhhccC
Confidence 123444445555544222222323 667777777777766 455666677
Q ss_pred CCCCEEEcCCCcCCCCCchhh--------hccccEEECCCCcccC--CchhhhhcCCCCcEEECCCCc
Q 045270 367 TTLSLLDLSNNSFMKKSDAFL--------NCLLQTLDLNGNRLQG--TVPKSIANCKMLEVLNLGNNQ 424 (440)
Q Consensus 367 ~~L~~L~l~~n~i~~~~~~~~--------~~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~ 424 (440)
++|++|++++|.++.++...+ ...++.+++++|++.. ..|..|..+++|+.+++++|+
T Consensus 263 ~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 263 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 777777777777776644333 2347888888888764 556788889999999998874
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.96 E-value=1.5e-31 Score=256.15 Aligned_cols=376 Identities=18% Similarity=0.160 Sum_probs=257.8
Q ss_pred CceEEEeeccceeecc----cCCCccccccCCCCeEEecCCccCCCccccch-hcCC----CCcEEEcccCcccc----C
Q 045270 21 GHVIGLDLSTESISGG----IENAASLFSLHYLRSLNLARTSFNGTQIPSKL-ANIS----SLTYLNLSDAGFAG----H 87 (440)
Q Consensus 21 ~~l~~L~l~~~~~~~~----~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~-~~l~----~L~~L~l~~~~~~~----~ 87 (440)
+++++|++++|.+++. .+. .+..+++|++|++++|.+... .+..+ ..++ +|++|++++|.+.. .
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~--~l~~~~~L~~L~Ls~n~l~~~-~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~ 104 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISS--ALRVNPALAELNLRSNELGDV-GVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 104 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHH--HHHTCTTCCEEECTTCCCHHH-HHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHH--HHHhCCCcCEEeCCCCcCChH-HHHHHHHHHhhCCCceeEEEccCCCCCHHHHHH
Confidence 6899999999998743 233 577889999999999988654 23333 3455 79999999999874 4
Q ss_pred CcccccccccCceecCCCCcccCccchh----hhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCC
Q 045270 88 IPLQISSMARLVALDFSFNQFSGSISSI----RWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGN 163 (440)
Q Consensus 88 ~~~~~~~l~~L~~L~L~~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~ 163 (440)
++..+..+++|++|++++|.+.+..... .....++|++|++++|.+++..+..+.... ..+++|++|++++|
T Consensus 105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l----~~~~~L~~L~L~~n 180 (461)
T 1z7x_W 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVL----RAKPDFKELTVSNN 180 (461)
T ss_dssp HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHH----HHCTTCCEEECCSS
T ss_pred HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHH----hhCCCCCEEECcCC
Confidence 5888899999999999999987433221 122356899999999998754332222211 23479999999999
Q ss_pred ccCCccccccc-----cccCccEEecccccccccc---chhhHhcCCCCcEEEcCCCcccccCC----ccccCCccccce
Q 045270 164 RLRGSIPVSVF-----ELKKLTSLLLSSNNLHGTV---QLDKILNLGNLAKLDLSYNSLAVDES----SRNYSFSPMLEL 231 (440)
Q Consensus 164 ~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~~L~~ 231 (440)
.+....+..+. ..++|++|++++|.+.... ....+..+++|+.|++++|.++.... ...+..+++|+.
T Consensus 181 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~ 260 (461)
T 1z7x_W 181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRT 260 (461)
T ss_dssp BCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCE
T ss_pred CcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceE
Confidence 88744333333 2569999999999887321 23456789999999999998865432 111335789999
Q ss_pred eecCCCCCCC-----CCC-CcccCcccEEeccCcccccccCcccccc---cccceeEEEccCcccccccCCccCCceeEE
Q 045270 232 LNLASCKLRE-----IPN-LKNQSQLQYLYLSENQISREIPNWIWRV---SVVGLHCLNLSHNLLVGFQGPYSIPALRFI 302 (440)
Q Consensus 232 L~l~~~~l~~-----l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L 302 (440)
|++++|.++. ++. +..+++|++|++++|.+.+..+..+... ..++|++|++++|.++...... +
T Consensus 261 L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~-l------ 333 (461)
T 1z7x_W 261 LWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSH-F------ 333 (461)
T ss_dssp EECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH-H------
T ss_pred EECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHH-H------
Confidence 9999999986 444 6778999999999998865444333221 1124555555555543221000 0
Q ss_pred EcCCccccCcccCCCCCccEEEccCCcccccCCccccc----cCCCcceEecccccccc----cchhhhhccCCCCEEEc
Q 045270 303 DLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGN----FMPRLRYFCAANNGLTG----IIPASLCNATTLSLLDL 374 (440)
Q Consensus 303 ~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~----~~~~L~~L~l~~~~l~~----~~~~~~~~~~~L~~L~l 374 (440)
.......++|++|++++|.+.+..+..+.. ..++|++|++++|.+++ ..+..+..+++|++|++
T Consensus 334 --------~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l 405 (461)
T 1z7x_W 334 --------SSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL 405 (461)
T ss_dssp --------HHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEEC
T ss_pred --------HHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEEC
Confidence 000111357777778777776433332221 25789999999999885 57778888999999999
Q ss_pred CCCcCCCCCchhh-------hccccEEECCCCcccCCchhhh----hcCCCCcEE
Q 045270 375 SNNSFMKKSDAFL-------NCLLQTLDLNGNRLQGTVPKSI----ANCKMLEVL 418 (440)
Q Consensus 375 ~~n~i~~~~~~~~-------~~~L~~L~l~~n~~~~~~~~~~----~~l~~L~~L 418 (440)
++|.+.+.....+ .+.|+.|.+.++......++.+ ...|+|+.+
T Consensus 406 ~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l~~l~~~~p~l~i~ 460 (461)
T 1z7x_W 406 SNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 460 (461)
T ss_dssp CSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHHHHHHCTTSEEE
T ss_pred CCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHHHHHhccCCCcEee
Confidence 9999876532222 2359999999888775544433 346777654
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=5.4e-28 Score=220.83 Aligned_cols=261 Identities=20% Similarity=0.250 Sum_probs=152.0
Q ss_pred ccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCcccccee
Q 045270 153 SALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELL 232 (440)
Q Consensus 153 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 232 (440)
+.+++|++++|.+....+..+..+++|++|++++|.+. .+.+..+..+++|+.|++++|.++..+... .++|++|
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~----~~~L~~L 128 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLVEIPPNL----PSSLVEL 128 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECGGGSTTCTTCCEEECCSSCCCSCCSSC----CTTCCEE
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccC-ccCHhHhhCcCCCCEEECCCCcCCccCccc----cccCCEE
Confidence 34555566655555333445555666666666666554 333344556666666666666555333221 1566666
Q ss_pred ecCCCCCCCCCC--CcccCcccEEeccCccccc--ccCcccccccccceeEEEccCcccccccCCccCCceeEEEcCCcc
Q 045270 233 NLASCKLREIPN--LKNQSQLQYLYLSENQISR--EIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQ 308 (440)
Q Consensus 233 ~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 308 (440)
++++|.++.++. +..+++|+.|++++|.+.. ..+..+... +|+.|++++|.++.++... .++|++|++++|.
T Consensus 129 ~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l---~L~~L~l~~n~l~~l~~~~-~~~L~~L~l~~n~ 204 (332)
T 2ft3_A 129 RIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL---KLNYLRISEAKLTGIPKDL-PETLNELHLDHNK 204 (332)
T ss_dssp ECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC---CCSCCBCCSSBCSSCCSSS-CSSCSCCBCCSSC
T ss_pred ECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC---ccCEEECcCCCCCccCccc-cCCCCEEECCCCc
Confidence 666666666654 5666677777777666642 233333222 4666666666665544322 2556666666665
Q ss_pred ccCccc---CCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCch
Q 045270 309 LRGNIH---QLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDA 385 (440)
Q Consensus 309 ~~~~~~---~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~ 385 (440)
+.+..+ ..+++|+.|++++|.+.+ ++...+..+++|+.|++++|.++ .+|..+..+++|++|++++|+++.++..
T Consensus 205 i~~~~~~~l~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~ 282 (332)
T 2ft3_A 205 IQAIELEDLLRYSKLYRLGLGHNQIRM-IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVN 282 (332)
T ss_dssp CCCCCTTSSTTCTTCSCCBCCSSCCCC-CCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTT
T ss_pred CCccCHHHhcCCCCCCEEECCCCcCCc-CChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChh
Confidence 554332 224567777777777763 33333333777777777777777 4566677777777777777777766443
Q ss_pred hh--------hccccEEECCCCccc--CCchhhhhcCCCCcEEECCCCc
Q 045270 386 FL--------NCLLQTLDLNGNRLQ--GTVPKSIANCKMLEVLNLGNNQ 424 (440)
Q Consensus 386 ~~--------~~~L~~L~l~~n~~~--~~~~~~~~~l~~L~~L~l~~n~ 424 (440)
.+ ...|+.|++++|++. +..+.+|..+++|+.+++++|.
T Consensus 283 ~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 283 DFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp SSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred HccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 32 133777777777766 4556677777777777777764
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.96 E-value=5e-27 Score=214.30 Aligned_cols=218 Identities=18% Similarity=0.185 Sum_probs=150.1
Q ss_pred ceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCcee
Q 045270 22 HVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVAL 101 (440)
Q Consensus 22 ~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 101 (440)
++++++++++.++. +|. .+ .+.+++|++++|.+... .+..+.++++|++|++++|.+.+..|.++..+++|++|
T Consensus 32 ~l~~l~~~~~~l~~-lp~--~~--~~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 105 (330)
T 1xku_A 32 HLRVVQCSDLGLEK-VPK--DL--PPDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL 105 (330)
T ss_dssp ETTEEECTTSCCCS-CCC--SC--CTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred CCeEEEecCCCccc-cCc--cC--CCCCeEEECCCCcCCEe-ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE
Confidence 57888999888764 443 23 37899999999998765 55579999999999999999997779999999999999
Q ss_pred cCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCC--ccccccccccCc
Q 045270 102 DFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRG--SIPVSVFELKKL 179 (440)
Q Consensus 102 ~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L 179 (440)
++++|.+. .++... .++|++|++++|.+....+..+.. +++|++|++++|.+.. ..+..+..+++|
T Consensus 106 ~Ls~n~l~-~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L 173 (330)
T 1xku_A 106 YLSKNQLK-ELPEKM---PKTLQELRVHENEITKVRKSVFNG--------LNQMIVVELGTNPLKSSGIENGAFQGMKKL 173 (330)
T ss_dssp ECCSSCCS-BCCSSC---CTTCCEEECCSSCCCBBCHHHHTT--------CTTCCEEECCSSCCCGGGBCTTGGGGCTTC
T ss_pred ECCCCcCC-ccChhh---cccccEEECCCCcccccCHhHhcC--------CccccEEECCCCcCCccCcChhhccCCCCc
Confidence 99999988 444322 379999999999998544444443 3688899998887752 445566667777
Q ss_pred cEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCC--CcccCcccEEecc
Q 045270 180 TSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLS 257 (440)
Q Consensus 180 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~ 257 (440)
++|++++|.+. .++.. ..++|+.|++++|.++...+.. +..+++|+.|++++|.++.++. +..+++|+.|+++
T Consensus 174 ~~L~l~~n~l~-~l~~~---~~~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 248 (330)
T 1xku_A 174 SYIRIADTNIT-TIPQG---LPPSLTELHLDGNKITKVDAAS-LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 248 (330)
T ss_dssp CEEECCSSCCC-SCCSS---CCTTCSEEECTTSCCCEECTGG-GTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECC
T ss_pred CEEECCCCccc-cCCcc---ccccCCEEECCCCcCCccCHHH-hcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECC
Confidence 77777777665 33321 1255666666666555443322 4445555555555555554432 4445555555555
Q ss_pred Ccccc
Q 045270 258 ENQIS 262 (440)
Q Consensus 258 ~~~~~ 262 (440)
+|.+.
T Consensus 249 ~N~l~ 253 (330)
T 1xku_A 249 NNKLV 253 (330)
T ss_dssp SSCCS
T ss_pred CCcCc
Confidence 55443
No 47
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.96 E-value=3.4e-27 Score=215.51 Aligned_cols=279 Identities=21% Similarity=0.224 Sum_probs=230.0
Q ss_pred ccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCcccccee
Q 045270 153 SALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELL 232 (440)
Q Consensus 153 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 232 (440)
..++.++++++.+. .+|..+ .++++.|++++|.+. .++...+..+++|+.|++++|.++...+.. +..+++|++|
T Consensus 33 c~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L 107 (332)
T 2ft3_A 33 CHLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKISKIHEKA-FSPLRKLQKL 107 (332)
T ss_dssp EETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECGGG-STTCTTCCEE
T ss_pred ccCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCC-ccCHhHhhCCCCCcEEECCCCccCccCHhH-hhCcCCCCEE
Confidence 36899999999887 677665 379999999999987 566667899999999999999998765554 7889999999
Q ss_pred ecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEEccCcccccc--cC-CccCCceeEEEcCCccc
Q 045270 233 NLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGF--QG-PYSIPALRFIDLSSHQL 309 (440)
Q Consensus 233 ~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~-~~~~~~L~~L~l~~~~~ 309 (440)
++++|.++.+|.-. .++|++|++++|.+.+..+..+.. .++|+.|++++|.++.. .+ .....+|++|++++|++
T Consensus 108 ~L~~n~l~~l~~~~-~~~L~~L~l~~n~i~~~~~~~~~~--l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l 184 (332)
T 2ft3_A 108 YISKNHLVEIPPNL-PSSLVELRIHDNRIRKVPKGVFSG--LRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL 184 (332)
T ss_dssp ECCSSCCCSCCSSC-CTTCCEEECCSSCCCCCCSGGGSS--CSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBC
T ss_pred ECCCCcCCccCccc-cccCCEEECCCCccCccCHhHhCC--CccCCEEECCCCccccCCCCcccccCCccCEEECcCCCC
Confidence 99999999988722 289999999999998655555543 45699999999998642 22 22222999999999999
Q ss_pred cCcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchhh-h
Q 045270 310 RGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFL-N 388 (440)
Q Consensus 310 ~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~-~ 388 (440)
.+.....+++|++|++++|.+.+..+..+.. +++|+.|++++|.+++..+..+..+++|++|++++|++..+|..+. .
T Consensus 185 ~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l 263 (332)
T 2ft3_A 185 TGIPKDLPETLNELHLDHNKIQAIELEDLLR-YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDL 263 (332)
T ss_dssp SSCCSSSCSSCSCCBCCSSCCCCCCTTSSTT-CTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGC
T ss_pred CccCccccCCCCEEECCCCcCCccCHHHhcC-CCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcC
Confidence 8876667789999999999998444444444 9999999999999998888889999999999999999998877554 4
Q ss_pred ccccEEECCCCcccCCchhhhhc------CCCCcEEECCCCccc--ccCcccccCCCCCC
Q 045270 389 CLLQTLDLNGNRLQGTVPKSIAN------CKMLEVLNLGNNQFS--DKFPCWLYDAPSLH 440 (440)
Q Consensus 389 ~~L~~L~l~~n~~~~~~~~~~~~------l~~L~~L~l~~n~~~--~~~~~~l~~~~~L~ 440 (440)
++|+.|++++|++++..+..|.. .+.|+.|++++|++. +..|..+..+++|+
T Consensus 264 ~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~ 323 (332)
T 2ft3_A 264 KLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRL 323 (332)
T ss_dssp TTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCST
T ss_pred ccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhh
Confidence 56999999999999887777765 377999999999997 66778888887764
No 48
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.95 E-value=1.7e-27 Score=215.19 Aligned_cols=246 Identities=28% Similarity=0.365 Sum_probs=201.8
Q ss_pred CCCCeEEecCCccCC--CccccchhcCCCCcEEEccc-CccccCCcccccccccCceecCCCCcccCccchhhhcccccc
Q 045270 47 HYLRSLNLARTSFNG--TQIPSKLANISSLTYLNLSD-AGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNL 123 (440)
Q Consensus 47 ~~L~~L~l~~~~~~~--~~l~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L 123 (440)
.++++|+++++.+.+ . +|..++++++|++|++++ |.+.+.+|..+.++++|++|++++|.+.+.++. .+..+++|
T Consensus 50 ~~l~~L~L~~~~l~~~~~-~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~-~~~~l~~L 127 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYP-IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPD-FLSQIKTL 127 (313)
T ss_dssp CCEEEEEEECCCCSSCEE-CCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCG-GGGGCTTC
T ss_pred ceEEEEECCCCCccCCcc-cChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCH-HHhCCCCC
Confidence 589999999999976 4 889999999999999995 889889999999999999999999999866655 58999999
Q ss_pred eEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCcccccccccc-CccEEeccccccccccchhhHhcCC
Q 045270 124 VYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELK-KLTSLLLSSNNLHGTVQLDKILNLG 202 (440)
Q Consensus 124 ~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~ 202 (440)
++|++++|.+.+.+|..+..+ ++|++|++++|.+.+..|..+..++ +|++|++++|.+.+..+ ..+..+.
T Consensus 128 ~~L~Ls~N~l~~~~p~~~~~l--------~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~-~~~~~l~ 198 (313)
T 1ogq_A 128 VTLDFSYNALSGTLPPSISSL--------PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP-PTFANLN 198 (313)
T ss_dssp CEEECCSSEEESCCCGGGGGC--------TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECC-GGGGGCC
T ss_pred CEEeCCCCccCCcCChHHhcC--------CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCC-hHHhCCc
Confidence 999999999998889888766 6899999999999888899999988 99999999999974444 5577776
Q ss_pred CCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCC-CCCcccCcccEEeccCcccccccCcccccccccceeEEE
Q 045270 203 NLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREI-PNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLN 281 (440)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 281 (440)
|+.|++++|.+....+.. +..+++|+.|++++|.++.. +.+..+++|++|++++|.+.+..|..+... ++|+.|+
T Consensus 199 -L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l--~~L~~L~ 274 (313)
T 1ogq_A 199 -LAFVDLSRNMLEGDASVL-FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQL--KFLHSLN 274 (313)
T ss_dssp -CSEEECCSSEEEECCGGG-CCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGC--TTCCEEE
T ss_pred -ccEEECcCCcccCcCCHH-HhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcC--cCCCEEE
Confidence 999999999987665544 77889999999999988744 447888999999999999988888777543 3477777
Q ss_pred ccCcccccc-cCCccCCceeEEEcCCc
Q 045270 282 LSHNLLVGF-QGPYSIPALRFIDLSSH 307 (440)
Q Consensus 282 l~~~~~~~~-~~~~~~~~L~~L~l~~~ 307 (440)
+++|.+++. +....+++|+.+++.+|
T Consensus 275 Ls~N~l~~~ip~~~~l~~L~~l~l~~N 301 (313)
T 1ogq_A 275 VSFNNLCGEIPQGGNLQRFDVSAYANN 301 (313)
T ss_dssp CCSSEEEEECCCSTTGGGSCGGGTCSS
T ss_pred CcCCcccccCCCCccccccChHHhcCC
Confidence 777776633 22233444444444444
No 49
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.95 E-value=5.7e-27 Score=213.02 Aligned_cols=236 Identities=17% Similarity=0.226 Sum_probs=150.8
Q ss_pred CCCCCCcceeeeeeCC---------CCceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCC
Q 045270 4 RQSTDCCDWSGVDCDE---------AGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSL 74 (440)
Q Consensus 4 ~~~~~~~~~~~~~~~~---------~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L 74 (440)
....++|.|.|+.|.. .++|++|+++++.++ .+|. .+..+++|++|++++|.+. .+|..++.+++|
T Consensus 55 ~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~--~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L 129 (328)
T 4fcg_A 55 SNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPD--QAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGL 129 (328)
T ss_dssp TTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCS--CGGGGTTCSEEEEESSCCC--CCCSCGGGGTTC
T ss_pred cccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcCh--hhhhCCCCCEEECCCCCcc--chhHHHhccCCC
Confidence 4578999999999842 278999999999887 4665 6888999999999999887 378889999999
Q ss_pred cEEEcccCccccCCcccccccccCceecCCCCcccCccchhh--------hcccccceEEEecCCccCCCCCcccccccc
Q 045270 75 TYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIR--------WEHLLNLVYAVLSDNSLNGSIPRSMFEFPI 146 (440)
Q Consensus 75 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~--------~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~ 146 (440)
++|++++|.+. .+|..+.++++|++|++++|.+.+.++... +..+++|++|++++|.++ .+|..+..+
T Consensus 130 ~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l-- 205 (328)
T 4fcg_A 130 ETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANL-- 205 (328)
T ss_dssp SEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGC--
T ss_pred CEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCC--
Confidence 99999999888 788889999999999999887776665421 223666666666666665 555554433
Q ss_pred ccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCc
Q 045270 147 FSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFS 226 (440)
Q Consensus 147 l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 226 (440)
++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+....+.. +..+
T Consensus 206 ------~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p-~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~l 276 (328)
T 4fcg_A 206 ------QNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYP-PIFGGRAPLKRLILKDCSNLLTLPLD-IHRL 276 (328)
T ss_dssp ------TTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCC-CCTTCCCCCCEEECTTCTTCCBCCTT-GGGC
T ss_pred ------CCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhH-HHhcCCCCCCEEECCCCCchhhcchh-hhcC
Confidence 45666666666655 344455555566666666555543332 23444555555555554443333222 3334
Q ss_pred cccceeecCCCCC-CCCCC-CcccCcccEEecc
Q 045270 227 PMLELLNLASCKL-REIPN-LKNQSQLQYLYLS 257 (440)
Q Consensus 227 ~~L~~L~l~~~~l-~~l~~-~~~~~~L~~L~l~ 257 (440)
++|+.|++++|.+ ..+|. +..+++++.+++.
T Consensus 277 ~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~ 309 (328)
T 4fcg_A 277 TQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP 309 (328)
T ss_dssp TTCCEEECTTCTTCCCCCGGGGGSCTTCEEECC
T ss_pred CCCCEEeCCCCCchhhccHHHhhccCceEEeCC
Confidence 4444444444332 23333 4444444444443
No 50
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=1.4e-25 Score=219.00 Aligned_cols=265 Identities=27% Similarity=0.312 Sum_probs=148.3
Q ss_pred cCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccc
Q 045270 97 RLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFEL 176 (440)
Q Consensus 97 ~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 176 (440)
++++|+++++.++ .++.. +. ++|++|++++|.++ .+|.. +++|++|++++|.+. .+|. .+
T Consensus 41 ~l~~L~ls~n~L~-~lp~~-l~--~~L~~L~L~~N~l~-~lp~~-----------l~~L~~L~Ls~N~l~-~lp~---~l 100 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDC-LP--AHITTLVIPDNNLT-SLPAL-----------PPELRTLEVSGNQLT-SLPV---LP 100 (622)
T ss_dssp CCCEEECCSSCCS-CCCSC-CC--TTCSEEEECSCCCS-CCCCC-----------CTTCCEEEECSCCCS-CCCC---CC
T ss_pred CCcEEEecCCCcC-ccChh-hC--CCCcEEEecCCCCC-CCCCc-----------CCCCCEEEcCCCcCC-cCCC---CC
Confidence 4556666666555 33321 11 45555555555554 33331 135555555555554 3333 34
Q ss_pred cCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEec
Q 045270 177 KKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYL 256 (440)
Q Consensus 177 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l 256 (440)
++|++|++++|.+. .++. .+++ |+.|++++|.++.+|. .+++|+.|++
T Consensus 101 ~~L~~L~Ls~N~l~-~l~~----~l~~-------------------------L~~L~L~~N~l~~lp~--~l~~L~~L~L 148 (622)
T 3g06_A 101 PGLLELSIFSNPLT-HLPA----LPSG-------------------------LCKLWIFGNQLTSLPV--LPPGLQELSV 148 (622)
T ss_dssp TTCCEEEECSCCCC-CCCC----CCTT-------------------------CCEEECCSSCCSCCCC--CCTTCCEEEC
T ss_pred CCCCEEECcCCcCC-CCCC----CCCC-------------------------cCEEECCCCCCCcCCC--CCCCCCEEEC
Confidence 55555555555443 2221 3344 4455555554444443 1245555555
Q ss_pred cCcccccccCcccccccccceeEEEccCcccccccCCccCCceeEEEcCCccccCcccCCCCCccEEEccCCcccccCCc
Q 045270 257 SENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPA 336 (440)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~ 336 (440)
++|.+.+ +|.. ..+|+.|++++|.++.++ ..+++|+.|++++|.+.+ ++..+++|+.|++++|.+. .+|.
T Consensus 149 s~N~l~~-l~~~-----~~~L~~L~L~~N~l~~l~--~~~~~L~~L~Ls~N~l~~-l~~~~~~L~~L~L~~N~l~-~l~~ 218 (622)
T 3g06_A 149 SDNQLAS-LPAL-----PSELCKLWAYNNQLTSLP--MLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLT-SLPA 218 (622)
T ss_dssp CSSCCSC-CCCC-----CTTCCEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCS-SCCC
T ss_pred cCCcCCC-cCCc-----cCCCCEEECCCCCCCCCc--ccCCCCcEEECCCCCCCC-CCCccchhhEEECcCCccc-ccCC
Confidence 5554432 2211 123555555555555544 234566666666665554 2233467777777777776 4443
Q ss_pred cccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchhhhccccEEECCCCcccCCchhhhhcCCCCc
Q 045270 337 DTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLE 416 (440)
Q Consensus 337 ~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 416 (440)
. +++|+.|++++|.+++ +| ..+++|+.|++++|.++.++. ...+|+.|++++|.++ .+|..+.++++|+
T Consensus 219 ~----~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~lp~--~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~ 287 (622)
T 3g06_A 219 L----PSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLTSLPM--LPSGLLSLSVYRNQLT-RLPESLIHLSSET 287 (622)
T ss_dssp C----CTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCC-SCCGGGGGSCTTC
T ss_pred C----CCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCCcCCc--ccccCcEEeCCCCCCC-cCCHHHhhccccC
Confidence 2 5677777777777774 33 345777777777777777765 4456778888887777 5566777778888
Q ss_pred EEECCCCcccccCccccc
Q 045270 417 VLNLGNNQFSDKFPCWLY 434 (440)
Q Consensus 417 ~L~l~~n~~~~~~~~~l~ 434 (440)
.|++++|++++..|..+.
T Consensus 288 ~L~L~~N~l~~~~~~~l~ 305 (622)
T 3g06_A 288 TVNLEGNPLSERTLQALR 305 (622)
T ss_dssp EEECCSCCCCHHHHHHHH
T ss_pred EEEecCCCCCCcCHHHHH
Confidence 888888877776666544
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=4.6e-26 Score=205.66 Aligned_cols=241 Identities=22% Similarity=0.295 Sum_probs=164.7
Q ss_pred cceeeeeeCCC----------CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCc-cccchhcCCCCcEEE
Q 045270 10 CDWSGVDCDEA----------GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQ-IPSKLANISSLTYLN 78 (440)
Q Consensus 10 ~~~~~~~~~~~----------~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-l~~~~~~l~~L~~L~ 78 (440)
|.|.+++|... .++++|++++|.+++..+. .|..+++|++|++++|.+.... .+..+..+++|++|+
T Consensus 7 C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 7 CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHG--VFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp EETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTT--TTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred eCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHh--HhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence 67888888642 3678888888877743333 5678888888888887775321 245566778888888
Q ss_pred cccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEE
Q 045270 79 LSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTL 158 (440)
Q Consensus 79 l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L 158 (440)
+++|.+. .+|..+..+++|++|++++|.+.+......+..+++|++|++++|.+.+..+..+..+ ++|++|
T Consensus 85 Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--------~~L~~L 155 (306)
T 2z66_A 85 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL--------SSLEVL 155 (306)
T ss_dssp CCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTC--------TTCCEE
T ss_pred CCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccC--------cCCCEE
Confidence 8888777 5666777888888888888877744443457777888888888887765555555433 577788
Q ss_pred EcCCCccCC-ccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCC
Q 045270 159 DLSGNRLRG-SIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASC 237 (440)
Q Consensus 159 ~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 237 (440)
++++|.+.+ ..|..+..+++|++|++++|.+. ...+..+..+++|+.|++++|.++...... +..+++|+.|++++|
T Consensus 156 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFP-YKCLNSLQVLDYSLN 233 (306)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCSBCCSGG-GTTCTTCCEEECTTS
T ss_pred ECCCCccccccchhHHhhCcCCCEEECCCCCcC-CcCHHHhcCCCCCCEEECCCCccCccChhh-ccCcccCCEeECCCC
Confidence 888777764 35666777777777777777776 444455667777777777777776554433 556667777777777
Q ss_pred CCCCCCC--Cccc-CcccEEeccCccccc
Q 045270 238 KLREIPN--LKNQ-SQLQYLYLSENQISR 263 (440)
Q Consensus 238 ~l~~l~~--~~~~-~~L~~L~l~~~~~~~ 263 (440)
.++..+. +..+ ++|+.|++++|.+.+
T Consensus 234 ~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 234 HIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred CCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 7665433 5555 367777777776654
No 52
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.94 E-value=4.6e-28 Score=239.31 Aligned_cols=383 Identities=15% Similarity=0.099 Sum_probs=198.0
Q ss_pred ccCCCCeEEecCCccCCCccccchhc-CCC-CcEEEcccCcc-cc-CCcccccccccCceecCCCCcccCcc---chhhh
Q 045270 45 SLHYLRSLNLARTSFNGTQIPSKLAN-ISS-LTYLNLSDAGF-AG-HIPLQISSMARLVALDFSFNQFSGSI---SSIRW 117 (440)
Q Consensus 45 ~l~~L~~L~l~~~~~~~~~l~~~~~~-l~~-L~~L~l~~~~~-~~-~~~~~~~~l~~L~~L~L~~~~~~~~~---~~~~~ 117 (440)
.+++|++|++++|.+... .+..+.. ++. |++|++++|.. .. .++.....+++|++|+|++|.+.+.. .....
T Consensus 110 ~~~~L~~L~L~~~~i~~~-~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 110 NLRQLKSVHFRRMIVSDL-DLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp HCTTCCEEEEESCBCCHH-HHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred hCCCCCeEEeeccEecHH-HHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence 445555555555544322 2222322 222 55555554431 10 11111234455555555555443221 11123
Q ss_pred cccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccc--cccch
Q 045270 118 EHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLH--GTVQL 195 (440)
Q Consensus 118 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~ 195 (440)
..+++|++|++++|.+.+..+..+..+. ..+++|++|++++|.+. .++..+..+++|++|.+...... .....
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~----~~~~~L~~L~L~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 263 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIA----RNCRSLVSVKVGDFEIL-ELVGFFKAAANLEEFCGGSLNEDIGMPEKY 263 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHH----HHCTTCCEEECSSCBGG-GGHHHHHHCTTCCEEEECBCCCCTTCTTSS
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHH----hhCCCCcEEeccCccHH-HHHHHHhhhhHHHhhcccccccccchHHHH
Confidence 4445555555555544311111111110 22345555555555544 24444445555555555432111 00011
Q ss_pred hhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCC--C-CcccCcccEEeccCcccccccCcccccc
Q 045270 196 DKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIP--N-LKNQSQLQYLYLSENQISREIPNWIWRV 272 (440)
Q Consensus 196 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~--~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 272 (440)
..+..+++|+.+++++.... .....+..+++|++|++++|.++... . +..+++|+.|+++ +.+.......+. .
T Consensus 264 ~~l~~~~~L~~L~l~~~~~~--~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~-~ 339 (592)
T 3ogk_B 264 MNLVFPRKLCRLGLSYMGPN--EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLA-Q 339 (592)
T ss_dssp SCCCCCTTCCEEEETTCCTT--TGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHH-H
T ss_pred HHhhccccccccCccccchh--HHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHH-H
Confidence 12334455555555543211 11222445667777777777654211 1 4566777777776 333221111111 1
Q ss_pred cccceeEEEccC-----------cccccc--cC-CccCCceeEEEcCCccccCccc----CCCCCccEEEcc----CCcc
Q 045270 273 SVVGLHCLNLSH-----------NLLVGF--QG-PYSIPALRFIDLSSHQLRGNIH----QLPNNLIYIDFS----NNNF 330 (440)
Q Consensus 273 ~~~~L~~L~l~~-----------~~~~~~--~~-~~~~~~L~~L~l~~~~~~~~~~----~~~~~L~~L~L~----~~~~ 330 (440)
..++|++|++++ +.++.. .. ...+++|++|++..+.+.+... ..+++|+.|+++ .+.+
T Consensus 340 ~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l 419 (592)
T 3ogk_B 340 YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERI 419 (592)
T ss_dssp HCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCC
T ss_pred hCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccc
Confidence 335588888873 233221 11 1237888888887776664322 225689999996 4455
Q ss_pred cccCCcc-----ccccCCCcceEeccccc--ccccchhhhh-ccCCCCEEEcCCCcCCCCCch-h-h-hccccEEECCCC
Q 045270 331 TSSIPAD-----TGNFMPRLRYFCAANNG--LTGIIPASLC-NATTLSLLDLSNNSFMKKSDA-F-L-NCLLQTLDLNGN 399 (440)
Q Consensus 331 ~~~~~~~-----~~~~~~~L~~L~l~~~~--l~~~~~~~~~-~~~~L~~L~l~~n~i~~~~~~-~-~-~~~L~~L~l~~n 399 (440)
+ ..|.. ....+++|++|++++|. +++.....+. .+++|++|++++|.+++.... . . .++|+.|++++|
T Consensus 420 ~-~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n 498 (592)
T 3ogk_B 420 T-DLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGC 498 (592)
T ss_dssp S-SCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESC
T ss_pred c-CchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCC
Confidence 4 22211 13338899999997653 5554444444 488999999999988764221 1 1 356999999999
Q ss_pred cccCCch-hhhhcCCCCcEEECCCCcccccCccccc-CCCC
Q 045270 400 RLQGTVP-KSIANCKMLEVLNLGNNQFSDKFPCWLY-DAPS 438 (440)
Q Consensus 400 ~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~l~-~~~~ 438 (440)
.+++... ..+..+++|+.|++++|++++.....+. .+|.
T Consensus 499 ~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~ 539 (592)
T 3ogk_B 499 CFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPY 539 (592)
T ss_dssp CCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTT
T ss_pred CCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCC
Confidence 9876544 4456899999999999999877554443 3444
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=6.2e-26 Score=209.01 Aligned_cols=274 Identities=18% Similarity=0.201 Sum_probs=136.2
Q ss_pred CCCCCCCcceeeeeeCCC------------CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhc
Q 045270 3 WRQSTDCCDWSGVDCDEA------------GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLAN 70 (440)
Q Consensus 3 w~~~~~~~~~~~~~~~~~------------~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~ 70 (440)
|..+...|.|.++ |+.. +++++|++++|.+++..+. .+..+++|++|++++|.+... .+..+++
T Consensus 23 ~~~~~~~C~~~~~-c~~~~~~l~~iP~~~~~~L~~L~l~~n~i~~~~~~--~~~~l~~L~~L~L~~n~l~~~-~~~~~~~ 98 (353)
T 2z80_A 23 SNQASLSCDRNGI-CKGSSGSLNSIPSGLTEAVKSLDLSNNRITYISNS--DLQRCVNLQALVLTSNGINTI-EEDSFSS 98 (353)
T ss_dssp ----CCEECTTSE-EECCSTTCSSCCTTCCTTCCEEECTTSCCCEECTT--TTTTCTTCCEEECTTSCCCEE-CTTTTTT
T ss_pred CCccCCCCCCCeE-eeCCCCCcccccccccccCcEEECCCCcCcccCHH--HhccCCCCCEEECCCCccCcc-CHhhcCC
Confidence 4455667777665 3210 2566666666665543333 455666666666666655443 3445556
Q ss_pred CCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCc-cCCCCCccccccccccc
Q 045270 71 ISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNS-LNGSIPRSMFEFPIFSN 149 (440)
Q Consensus 71 l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~l~~ 149 (440)
+++|++|++++|.+.+..+..+.++++|++|++++|.+.+......+..+++|++|++++|. +....+..+..+
T Consensus 99 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l----- 173 (353)
T 2z80_A 99 LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL----- 173 (353)
T ss_dssp CTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC-----
T ss_pred CCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCC-----
Confidence 66666666666666533333355566666666666655522221345556666666666653 332223333222
Q ss_pred cCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCcccc
Q 045270 150 ASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPML 229 (440)
Q Consensus 150 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 229 (440)
++|++|++++|.+.+..+..+..+++|++|++++|.+. ..+...+..+++|+.|++++|.++...... +
T Consensus 174 ---~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~-l------ 242 (353)
T 2z80_A 174 ---TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSE-L------ 242 (353)
T ss_dssp ---CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC---------
T ss_pred ---CCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccc-c------
Confidence 45666666666555444555555666666666666553 334334445556666666665554332211 0
Q ss_pred ceeecCCCCCCCCCCCcccCcccEEeccCccccc----ccCcccccccccceeEEEccCcccccccCC--ccCCceeEEE
Q 045270 230 ELLNLASCKLREIPNLKNQSQLQYLYLSENQISR----EIPNWIWRVSVVGLHCLNLSHNLLVGFQGP--YSIPALRFID 303 (440)
Q Consensus 230 ~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~ 303 (440)
+.....+.++.++++++.+.+ .+|..+. ..++|+.|++++|.++.++.. ..+++|++|+
T Consensus 243 -------------~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~--~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~ 307 (353)
T 2z80_A 243 -------------STGETNSLIKKFTFRNVKITDESLFQVMKLLN--QISGLLELEFSRNQLKSVPDGIFDRLTSLQKIW 307 (353)
T ss_dssp -----------------CCCCCCEEEEESCBCCHHHHHHHHHHHH--TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred -------------ccccccchhhccccccccccCcchhhhHHHHh--cccCCCEEECCCCCCCccCHHHHhcCCCCCEEE
Confidence 001223334444444443332 1222222 223355566655555555442 3466666666
Q ss_pred cCCccccC
Q 045270 304 LSSHQLRG 311 (440)
Q Consensus 304 l~~~~~~~ 311 (440)
+++|.+..
T Consensus 308 L~~N~~~~ 315 (353)
T 2z80_A 308 LHTNPWDC 315 (353)
T ss_dssp CCSSCBCC
T ss_pred eeCCCccC
Confidence 66665554
No 54
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.93 E-value=9.1e-28 Score=237.18 Aligned_cols=388 Identities=14% Similarity=0.067 Sum_probs=270.3
Q ss_pred CceEEEeeccceeecccCCCccccc-cCC-CCeEEecCCcc-CCCccccchhcCCCCcEEEcccCccccC----Cccccc
Q 045270 21 GHVIGLDLSTESISGGIENAASLFS-LHY-LRSLNLARTSF-NGTQIPSKLANISSLTYLNLSDAGFAGH----IPLQIS 93 (440)
Q Consensus 21 ~~l~~L~l~~~~~~~~~~~~~~~~~-l~~-L~~L~l~~~~~-~~~~l~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~ 93 (440)
+++++|+|+++.+++..+. .+.. ++. |++|++++|.. ....++....++++|++|++++|.+.+. ++..+.
T Consensus 112 ~~L~~L~L~~~~i~~~~~~--~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLD--RLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp TTCCEEEEESCBCCHHHHH--HHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred CCCCeEEeeccEecHHHHH--HHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 6799999999988765544 5555 444 99999998873 2222344456899999999999988655 334456
Q ss_pred ccccCceecCCCCcccCcc---chhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccC---C
Q 045270 94 SMARLVALDFSFNQFSGSI---SSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLR---G 167 (440)
Q Consensus 94 ~l~~L~~L~L~~~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~---~ 167 (440)
.+++|++|++++|.+.+.. ....+..+++|+.|++++|.+. .++..+..+ ++|++|+++.+... .
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~l~~~~~~~--------~~L~~L~l~~~~~~~~~~ 260 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEIL-ELVGFFKAA--------ANLEEFCGGSLNEDIGMP 260 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGG-GGHHHHHHC--------TTCCEEEECBCCCCTTCT
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHH-HHHHHHhhh--------hHHHhhcccccccccchH
Confidence 7899999999999886221 1224577899999999999887 466555444 68999999754322 2
Q ss_pred ccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCC--CCCC-
Q 045270 168 SIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR--EIPN- 244 (440)
Q Consensus 168 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~--~l~~- 244 (440)
.....+..+++|+.+.+.++... . .+..+..+++|+.|++++|.++.......+..+++|+.|++.++ +. .++.
T Consensus 261 ~~~~~l~~~~~L~~L~l~~~~~~-~-l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~~~~~l~~~ 337 (592)
T 3ogk_B 261 EKYMNLVFPRKLCRLGLSYMGPN-E-MPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV-IGDRGLEVL 337 (592)
T ss_dssp TSSSCCCCCTTCCEEEETTCCTT-T-GGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHH
T ss_pred HHHHHhhccccccccCccccchh-H-HHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc-cCHHHHHHH
Confidence 33445667889999988875432 2 23456778899999999998655444333577899999999833 32 2232
Q ss_pred CcccCcccEEeccC-----------cccccccCcccccccccceeEEEccCcccccccCC---ccCCceeEEEcC----C
Q 045270 245 LKNQSQLQYLYLSE-----------NQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGP---YSIPALRFIDLS----S 306 (440)
Q Consensus 245 ~~~~~~L~~L~l~~-----------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~L~~L~l~----~ 306 (440)
...+++|++|++++ +.+++.....+. ...++|++|+++.+.++..... ..+++|+.|++. .
T Consensus 338 ~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~-~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~ 416 (592)
T 3ogk_B 338 AQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA-QGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDRE 416 (592)
T ss_dssp HHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHH-HHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCC
T ss_pred HHhCCCCCEEEeecCccccccccccCccCHHHHHHHH-hhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCC
Confidence 45678899999983 344432222211 2356799999977766543221 238899999996 4
Q ss_pred ccccCcc--------cCCCCCccEEEccCCc--ccccCCccccccCCCcceEeccccccccc-chhhhhccCCCCEEEcC
Q 045270 307 HQLRGNI--------HQLPNNLIYIDFSNNN--FTSSIPADTGNFMPRLRYFCAANNGLTGI-IPASLCNATTLSLLDLS 375 (440)
Q Consensus 307 ~~~~~~~--------~~~~~~L~~L~L~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~~L~~L~l~ 375 (440)
+.+.+.. ...+++|++|+++.|. +++.....+...+++|++|++++|.+++. .+..+..+++|++|+++
T Consensus 417 n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~ 496 (592)
T 3ogk_B 417 ERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMR 496 (592)
T ss_dssp SCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEE
T ss_pred ccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeecc
Confidence 5555421 2236899999997654 55444444555589999999999998763 45556889999999999
Q ss_pred CCcCCCCCc-h--hhhccccEEECCCCcccCCchhhh-hcCCCCcEEECCCC
Q 045270 376 NNSFMKKSD-A--FLNCLLQTLDLNGNRLQGTVPKSI-ANCKMLEVLNLGNN 423 (440)
Q Consensus 376 ~n~i~~~~~-~--~~~~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~l~~n 423 (440)
+|.+++... . ...++|+.|++++|++++.....+ ..+|.+....+..+
T Consensus 497 ~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 497 GCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp SCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred CCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 999765421 1 124679999999999998766555 46888887777665
No 55
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=1.9e-26 Score=208.43 Aligned_cols=254 Identities=20% Similarity=0.142 Sum_probs=131.5
Q ss_pred cccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccc-cCCccccc-------ccccCceecCCCCcccCccchh
Q 045270 44 FSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFA-GHIPLQIS-------SMARLVALDFSFNQFSGSISSI 115 (440)
Q Consensus 44 ~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~-------~l~~L~~L~L~~~~~~~~~~~~ 115 (440)
...++|++|++++|.+ . +|..+... |++|+++++.+. ..+|..+. ++++|++|++++|.+.+.++..
T Consensus 40 ~~~~~L~~l~l~~n~l--~-~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 40 GGGRSLEYLLKRVDTE--A-DLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEECTTHHHHCCTT--C-CCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred ccCCCceeEeeccccc--c-cHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 3445555555555555 2 44444432 555555555552 23333333 4555556666655555444432
Q ss_pred h-hcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccc
Q 045270 116 R-WEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQ 194 (440)
Q Consensus 116 ~-~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 194 (440)
. +..+++|++|++++|.+++. |..+..++. ...++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+
T Consensus 115 ~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~---~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 190 (312)
T 1wwl_A 115 LLEATGPDLNILNLRNVSWATR-DAWLAELQQ---WLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190 (312)
T ss_dssp SSSCCSCCCSEEEEESCBCSSS-SSHHHHHHT---TCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH
T ss_pred HHHhcCCCccEEEccCCCCcch-hHHHHHHHH---hhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH
Confidence 2 15555566666666555533 444433310 011455666666665554444555556666666666655432211
Q ss_pred -hhh--HhcCCCCcEEEcCCCcccccC--CccccCCccccceeecCCCCCCCCC---CCcccCcccEEeccCcccccccC
Q 045270 195 -LDK--ILNLGNLAKLDLSYNSLAVDE--SSRNYSFSPMLELLNLASCKLREIP---NLKNQSQLQYLYLSENQISREIP 266 (440)
Q Consensus 195 -~~~--~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~l~~l~---~~~~~~~L~~L~l~~~~~~~~~~ 266 (440)
... +..+++|+.|++++|.++... ....+..+++|+.|++++|.++..+ .+..+++|+.|++++|.++ .+|
T Consensus 191 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip 269 (312)
T 1wwl_A 191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVP 269 (312)
T ss_dssp HHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCC
T ss_pred HHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhh
Confidence 111 245556666666666554211 1111234456666666666665432 2444566666666666665 444
Q ss_pred cccccccccceeEEEccCcccccccCCccCCceeEEEcCCccccC
Q 045270 267 NWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRG 311 (440)
Q Consensus 267 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 311 (440)
..+. ++|++|++++|.++..+....+++|++|++++|.+.+
T Consensus 270 ~~~~----~~L~~L~Ls~N~l~~~p~~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 270 KGLP----AKLSVLDLSYNRLDRNPSPDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SSCC----SEEEEEECCSSCCCSCCCTTTSCEEEEEECTTCTTTC
T ss_pred hhcc----CCceEEECCCCCCCCChhHhhCCCCCEEeccCCCCCC
Confidence 4432 4466666666666666555567777777777776653
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=1.1e-24 Score=207.54 Aligned_cols=229 Identities=22% Similarity=0.221 Sum_probs=188.3
Q ss_pred CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCce
Q 045270 21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVA 100 (440)
Q Consensus 21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 100 (440)
.++++|+|++|.+++..+. .|..+++|++|++++|.+... .+..|.++++|++|++++|.+....+..+..+++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 151 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQAD--TFRHLHHLEVLQLGRNSIRQI-EVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRE 151 (452)
T ss_dssp TTCSEEECCSSCCCEECTT--TTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCE
T ss_pred CCccEEECcCCcCceECHH--HcCCCCCCCEEECCCCccCCc-ChhhccCcccCCEEECCCCcCCccChhhhcccCCCCE
Confidence 4789999999999887666 899999999999999988765 5678889999999999999998666666888999999
Q ss_pred ecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCcc
Q 045270 101 LDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLT 180 (440)
Q Consensus 101 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 180 (440)
|++++|.+. .++...+..+++|++|++++|.....++.... ..+++|++|++++|.+. .+| .+..+++|+
T Consensus 152 L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~-------~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~ 221 (452)
T 3zyi_A 152 LWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAF-------EGLFNLKYLNLGMCNIK-DMP-NLTPLVGLE 221 (452)
T ss_dssp EECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTT-------TTCTTCCEEECTTSCCS-SCC-CCTTCTTCC
T ss_pred EECCCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhc-------cCCCCCCEEECCCCccc-ccc-ccccccccc
Confidence 999999988 55556788999999999998654445554322 34478999999999887 444 477889999
Q ss_pred EEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCC--CcccCcccEEeccC
Q 045270 181 SLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSE 258 (440)
Q Consensus 181 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~ 258 (440)
+|++++|.+. .+.+..+..+++|+.|++++|.+....... +..+++|+.|++++|.++.++. +..+++|+.|++++
T Consensus 222 ~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 222 ELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNA-FDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHH 299 (452)
T ss_dssp EEECTTSCCS-EECGGGGTTCTTCCEEECTTSCCCEECTTT-TTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCS
T ss_pred EEECcCCcCc-ccCcccccCccCCCEEEeCCCcCceECHHH-hcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccC
Confidence 9999999987 555677889999999999999988766554 7788899999999999988876 77889999999999
Q ss_pred cccccc
Q 045270 259 NQISRE 264 (440)
Q Consensus 259 ~~~~~~ 264 (440)
|.+...
T Consensus 300 Np~~Cd 305 (452)
T 3zyi_A 300 NPWNCD 305 (452)
T ss_dssp SCEECS
T ss_pred CCcCCC
Confidence 887543
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.93 E-value=4.3e-25 Score=199.32 Aligned_cols=56 Identities=20% Similarity=0.267 Sum_probs=29.4
Q ss_pred CeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCccc
Q 045270 50 RSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFS 109 (440)
Q Consensus 50 ~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~ 109 (440)
+.++++++.+.. +|..+. ++|++|++++|.+....+..+.++++|++|++++|.+.
T Consensus 10 ~~l~c~~~~l~~--ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~ 65 (306)
T 2z66_A 10 TEIRCNSKGLTS--VPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS 65 (306)
T ss_dssp TEEECCSSCCSS--CCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC
T ss_pred CEEEcCCCCccc--CCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccC
Confidence 345555555432 344333 45666666666665332233456666666666666554
No 58
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.93 E-value=1.8e-25 Score=205.97 Aligned_cols=178 Identities=20% Similarity=0.179 Sum_probs=76.0
Q ss_pred CCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCcc-ccccccccccC
Q 045270 73 SLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRS-MFEFPIFSNAS 151 (440)
Q Consensus 73 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~l~~~~ 151 (440)
+|++|++++|.+.+..+..+.++++|++|++++|.+.+ +....+..+++|++|++++|.++ .+|.. +..
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~-------- 122 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT-IEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKP-------- 122 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCE-ECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTT--------
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCc-cCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCC--------
Confidence 44444444444443333344444444444444444442 22223444444444444444444 22222 221
Q ss_pred cccccEEEcCCCccCCcccc--ccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCcccc
Q 045270 152 SSALDTLDLSGNRLRGSIPV--SVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPML 229 (440)
Q Consensus 152 ~~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 229 (440)
+++|++|++++|.+. .++. .+..+++|++|++++|.....++...+..+++|+.|++++|.+....+.. +..+++|
T Consensus 123 l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L 200 (353)
T 2z80_A 123 LSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS-LKSIQNV 200 (353)
T ss_dssp CTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTT-TTTCSEE
T ss_pred CccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHH-HhccccC
Confidence 234455555544444 2222 34445555555555542111333333444445555555554443332222 3344444
Q ss_pred ceeecCCCCCCCCCC--CcccCcccEEeccCcccc
Q 045270 230 ELLNLASCKLREIPN--LKNQSQLQYLYLSENQIS 262 (440)
Q Consensus 230 ~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~ 262 (440)
++|++++|.++.++. +..+++|+.|++++|.+.
T Consensus 201 ~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 235 (353)
T 2z80_A 201 SHLILHMKQHILLLEIFVDVTSSVECLELRDTDLD 235 (353)
T ss_dssp EEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCT
T ss_pred CeecCCCCccccchhhhhhhcccccEEECCCCccc
Confidence 555554444444333 223444555555544443
No 59
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.93 E-value=8.5e-24 Score=206.40 Aligned_cols=286 Identities=20% Similarity=0.270 Sum_probs=168.7
Q ss_pred CCCCCCCCcceeeee--------eCCCCceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCC
Q 045270 2 QWRQSTDCCDWSGVD--------CDEAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISS 73 (440)
Q Consensus 2 ~w~~~~~~~~~~~~~--------~~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~ 73 (440)
.|..+.++|.|.+.. |.. ..+++|+++++.++ .+|. .+. ++|++|++++|.+.. +|. .+++
T Consensus 14 ~W~~~~~~~~~~~r~~~~~~~~~c~~-~~l~~L~ls~n~L~-~lp~--~l~--~~L~~L~L~~N~l~~--lp~---~l~~ 82 (622)
T 3g06_A 14 AWRRAAPAEESRGRAAVVQKMRACLN-NGNAVLNVGESGLT-TLPD--CLP--AHITTLVIPDNNLTS--LPA---LPPE 82 (622)
T ss_dssp HHHHTCCGGGHHHHHHHHHHHHHHHH-HCCCEEECCSSCCS-CCCS--CCC--TTCSEEEECSCCCSC--CCC---CCTT
T ss_pred HHHhcCCcchhccccccCcccccccC-CCCcEEEecCCCcC-ccCh--hhC--CCCcEEEecCCCCCC--CCC---cCCC
Confidence 477778889986543 221 35889999999887 4554 343 789999999988863 555 5688
Q ss_pred CcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcc
Q 045270 74 LTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSS 153 (440)
Q Consensus 74 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~ 153 (440)
|++|++++|.+. .+|. .+++|++|++++|.+++ ++. .+++|+.|++++|.++ .+|..+ +
T Consensus 83 L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-l~~----~l~~L~~L~L~~N~l~-~lp~~l-----------~ 141 (622)
T 3g06_A 83 LRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH-LPA----LPSGLCKLWIFGNQLT-SLPVLP-----------P 141 (622)
T ss_dssp CCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC-CCC----CCTTCCEEECCSSCCS-CCCCCC-----------T
T ss_pred CCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC-CCC----CCCCcCEEECCCCCCC-cCCCCC-----------C
Confidence 999999998887 5664 66888888888888773 332 4577777888877776 455432 5
Q ss_pred cccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceee
Q 045270 154 ALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLN 233 (440)
Q Consensus 154 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 233 (440)
+|++|++++|.+. .+|. .+++|+.|.+++|.+. .++ ..+++|+.|++++|.++.... .+++|+.|+
T Consensus 142 ~L~~L~Ls~N~l~-~l~~---~~~~L~~L~L~~N~l~-~l~----~~~~~L~~L~Ls~N~l~~l~~-----~~~~L~~L~ 207 (622)
T 3g06_A 142 GLQELSVSDNQLA-SLPA---LPSELCKLWAYNNQLT-SLP----MLPSGLQELSVSDNQLASLPT-----LPSELYKLW 207 (622)
T ss_dssp TCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSCCCC-----CCTTCCEEE
T ss_pred CCCEEECcCCcCC-CcCC---ccCCCCEEECCCCCCC-CCc----ccCCCCcEEECCCCCCCCCCC-----ccchhhEEE
Confidence 6777777777766 3332 2356666666666665 233 234555666666655543221 124455555
Q ss_pred cCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEEccCcccccccCCccCCceeEEEcCCccccCcc
Q 045270 234 LASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNI 313 (440)
Q Consensus 234 l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 313 (440)
+++|.++.+|. .+++|+.|++++|.++ .++ ..+++|+.|++++|.+....
T Consensus 208 L~~N~l~~l~~--~~~~L~~L~Ls~N~L~--------------------------~lp--~~l~~L~~L~Ls~N~L~~lp 257 (622)
T 3g06_A 208 AYNNRLTSLPA--LPSGLKELIVSGNRLT--------------------------SLP--VLPSELKELMVSGNRLTSLP 257 (622)
T ss_dssp CCSSCCSSCCC--CCTTCCEEECCSSCCS--------------------------CCC--CCCTTCCEEECCSSCCSCCC
T ss_pred CcCCcccccCC--CCCCCCEEEccCCccC--------------------------cCC--CCCCcCcEEECCCCCCCcCC
Confidence 55555554443 1244444444444443 222 12233444444444333211
Q ss_pred cCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhcc
Q 045270 314 HQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNA 366 (440)
Q Consensus 314 ~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~ 366 (440)
. .+++|+.|++++|.++ .+|..+.. +++|+.|++++|.+.+..+..+..+
T Consensus 258 ~-~~~~L~~L~Ls~N~L~-~lp~~l~~-l~~L~~L~L~~N~l~~~~~~~l~~L 307 (622)
T 3g06_A 258 M-LPSGLLSLSVYRNQLT-RLPESLIH-LSSETTVNLEGNPLSERTLQALREI 307 (622)
T ss_dssp C-CCTTCCEEECCSSCCC-SCCGGGGG-SCTTCEEECCSCCCCHHHHHHHHHH
T ss_pred c-ccccCcEEeCCCCCCC-cCCHHHhh-ccccCEEEecCCCCCCcCHHHHHhc
Confidence 1 3345555666666555 55554443 5666666666666655555555443
No 60
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=2.1e-24 Score=204.71 Aligned_cols=228 Identities=24% Similarity=0.229 Sum_probs=177.6
Q ss_pred CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCce
Q 045270 21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVA 100 (440)
Q Consensus 21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 100 (440)
.+++.|+|++|.+++..+. .|..+++|++|++++|.+... .+..|.++++|++|++++|.+....+..|..+++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~--~~~~l~~L~~L~Ls~n~i~~i-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 140 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVN--SFKHLRHLEILQLSRNHIRTI-EIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKE 140 (440)
T ss_dssp TTCSEEECCSCCCCEECTT--TTSSCSSCCEEECCSSCCCEE-CGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCE
T ss_pred CCCcEEEccCCcCCeeCHH--HhhCCCCCCEEECCCCcCCcc-ChhhccCCccCCEEECCCCcCCeeCHhHhhccccCce
Confidence 4688889998888876655 788888999999988888654 5567888888999999888888555567888888999
Q ss_pred ecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCcc
Q 045270 101 LDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLT 180 (440)
Q Consensus 101 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 180 (440)
|++++|.+. .++...+..+++|++|++++|.....++...+ ..+++|++|++++|.+. .+| .+..+++|+
T Consensus 141 L~L~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~-------~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~ 210 (440)
T 3zyj_A 141 LWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAF-------EGLSNLRYLNLAMCNLR-EIP-NLTPLIKLD 210 (440)
T ss_dssp EECCSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTT-------TTCSSCCEEECTTSCCS-SCC-CCTTCSSCC
T ss_pred eeCCCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchh-------hcccccCeecCCCCcCc-ccc-ccCCCcccC
Confidence 999988887 55555688888899998888554434444322 34478888899888887 455 477788888
Q ss_pred EEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCC--CcccCcccEEeccC
Q 045270 181 SLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSE 258 (440)
Q Consensus 181 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~ 258 (440)
+|++++|.+. .+....+..+++|+.|++++|.++...... +..+++|+.|++++|.++.++. +..+++|+.|++++
T Consensus 211 ~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 211 ELDLSGNHLS-AIRPGSFQGLMHLQKLWMIQSQIQVIERNA-FDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHH 288 (440)
T ss_dssp EEECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTS-STTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCS
T ss_pred EEECCCCccC-ccChhhhccCccCCEEECCCCceeEEChhh-hcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCC
Confidence 8888888887 555567888888888888888887666554 6778888888888888887776 77788888888888
Q ss_pred ccccc
Q 045270 259 NQISR 263 (440)
Q Consensus 259 ~~~~~ 263 (440)
|.+..
T Consensus 289 Np~~C 293 (440)
T 3zyj_A 289 NPWNC 293 (440)
T ss_dssp SCEEC
T ss_pred CCccC
Confidence 87753
No 61
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=2.9e-25 Score=198.24 Aligned_cols=225 Identities=22% Similarity=0.187 Sum_probs=172.9
Q ss_pred EEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecC
Q 045270 24 IGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDF 103 (440)
Q Consensus 24 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 103 (440)
++++.+++.++. +|. ...++|++|+++++.+... .+..+..+++|++|++++|.+.+..|.++..+++|++|++
T Consensus 14 ~~~~c~~~~l~~-ip~----~~~~~l~~L~l~~n~i~~~-~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 87 (285)
T 1ozn_A 14 VTTSCPQQGLQA-VPV----GIPAASQRIFLHGNRISHV-PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL 87 (285)
T ss_dssp CEEECCSSCCSS-CCT----TCCTTCSEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred eEEEcCcCCccc-CCc----CCCCCceEEEeeCCcCCcc-CHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeC
Confidence 567777776653 332 2346888888888888654 4566788888888888888888666778888888888888
Q ss_pred CCCc-ccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEE
Q 045270 104 SFNQ-FSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSL 182 (440)
Q Consensus 104 ~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 182 (440)
++|. +. .+....+..+++|++|++++|.+.+..+..+..+ ++|++|++++|.+....+..+..+++|++|
T Consensus 88 ~~n~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 158 (285)
T 1ozn_A 88 SDNAQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL--------AALQYLYLQDNALQALPDDTFRDLGNLTHL 158 (285)
T ss_dssp CSCTTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTC--------TTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCcc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCC--------cCCCEEECCCCcccccCHhHhccCCCccEE
Confidence 8887 55 5544567888888888888888875556555444 688888988888875555567788889999
Q ss_pred eccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCC--CcccCcccEEeccCcc
Q 045270 183 LLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQ 260 (440)
Q Consensus 183 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~ 260 (440)
++++|.+. .++...+..+++|+.|++++|.+....+.. +..+++|+.|++++|.++.++. +..+++|+.|++++|.
T Consensus 159 ~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 159 FLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHA-FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp ECCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTT-TTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred ECCCCccc-ccCHHHhcCccccCEEECCCCcccccCHhH-ccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 99888887 556566788888999999998887665544 6778889999999998888775 7888899999999988
Q ss_pred ccccc
Q 045270 261 ISREI 265 (440)
Q Consensus 261 ~~~~~ 265 (440)
+....
T Consensus 237 ~~c~~ 241 (285)
T 1ozn_A 237 WVCDC 241 (285)
T ss_dssp EECSG
T ss_pred ccCCC
Confidence 76543
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.92 E-value=5.6e-24 Score=201.84 Aligned_cols=250 Identities=22% Similarity=0.220 Sum_probs=142.7
Q ss_pred CCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEE
Q 045270 48 YLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAV 127 (440)
Q Consensus 48 ~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~ 127 (440)
..+.++.++..+.. +|..+. ++++.|++++|.+....+..|.++++|++|+|++|.+. .++...+..+++|++|+
T Consensus 44 ~~~~v~c~~~~l~~--iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~i~~~~~~~l~~L~~L~ 118 (440)
T 3zyj_A 44 QFSKVICVRKNLRE--VPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLE 118 (440)
T ss_dssp TSCEEECCSCCCSS--CCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCC-EECGGGGTTCSSCCEEE
T ss_pred CCCEEEeCCCCcCc--CCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCC-ccChhhccCCccCCEEE
Confidence 35566666665533 565554 67777777777777666667777777777777777776 34444566666777777
Q ss_pred ecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEE
Q 045270 128 LSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKL 207 (440)
Q Consensus 128 l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 207 (440)
+++|.++...+..+.. +++|++|++++|.+....+..|..+++|++|+++++.....++...
T Consensus 119 L~~n~l~~~~~~~~~~--------l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~---------- 180 (440)
T 3zyj_A 119 LFDNRLTTIPNGAFVY--------LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGA---------- 180 (440)
T ss_dssp CCSSCCSSCCTTTSCS--------CSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTT----------
T ss_pred CCCCcCCeeCHhHhhc--------cccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcch----------
Confidence 7666666322223322 2456666666666553333344455555555555433222333333
Q ss_pred EcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEEccCccc
Q 045270 208 DLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLL 287 (440)
Q Consensus 208 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 287 (440)
+..+++|+.|++++|.++.+|.+..+++|+.|++++|.+.+..+..+... ++|++|++++|.+
T Consensus 181 ---------------~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l--~~L~~L~L~~n~l 243 (440)
T 3zyj_A 181 ---------------FEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGL--MHLQKLWMIQSQI 243 (440)
T ss_dssp ---------------TTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCCCEECTTTTTTC--TTCCEEECTTCCC
T ss_pred ---------------hhcccccCeecCCCCcCccccccCCCcccCEEECCCCccCccChhhhccC--ccCCEEECCCCce
Confidence 44455566666666666666656666666666666666655444444221 2244444433333
Q ss_pred ccccCCccCCceeEEEcCCccccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccc
Q 045270 288 VGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTG 357 (440)
Q Consensus 288 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 357 (440)
....+. ....+++|+.|+|++|.++ .++...+..+++|+.|++++|.+..
T Consensus 244 ~~~~~~-------------------~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~~C 293 (440)
T 3zyj_A 244 QVIERN-------------------AFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHNPWNC 293 (440)
T ss_dssp CEECTT-------------------SSTTCTTCCEEECTTSCCC-CCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred eEEChh-------------------hhcCCCCCCEEECCCCCCC-ccChhHhccccCCCEEEcCCCCccC
Confidence 322111 1112346777777777777 5555555557888888888887754
No 63
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.92 E-value=6.5e-24 Score=202.12 Aligned_cols=250 Identities=19% Similarity=0.182 Sum_probs=140.6
Q ss_pred CCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEE
Q 045270 48 YLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAV 127 (440)
Q Consensus 48 ~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~ 127 (440)
..+.++.++..+.. +|..+. +++++|++++|.+.+..+..|.++++|++|+|++|.+. .++...+..+++|++|+
T Consensus 55 ~~~~v~c~~~~l~~--iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L~ 129 (452)
T 3zyi_A 55 QFSKVVCTRRGLSE--VPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLE 129 (452)
T ss_dssp SSCEEECCSSCCSS--CCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEE
T ss_pred CCcEEEECCCCcCc--cCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccC-CcChhhccCcccCCEEE
Confidence 34566666655533 555444 57777777777777666667777777777777777766 33333566666666666
Q ss_pred ecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEE
Q 045270 128 LSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKL 207 (440)
Q Consensus 128 l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 207 (440)
+++|.++...+..+.. +++|++|++++|.+....+..|..+++|++|+++++...+.++...
T Consensus 130 L~~n~l~~~~~~~~~~--------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~---------- 191 (452)
T 3zyi_A 130 LFDNWLTVIPSGAFEY--------LSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGA---------- 191 (452)
T ss_dssp CCSSCCSBCCTTTSSS--------CTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTT----------
T ss_pred CCCCcCCccChhhhcc--------cCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhh----------
Confidence 6666665322222322 2456666666665553333344455555555555433222333223
Q ss_pred EcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEEccCccc
Q 045270 208 DLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLL 287 (440)
Q Consensus 208 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 287 (440)
+..+++|+.|++++|.++.+|.+..+++|+.|++++|.+.+..+..+... ++|+.|++++|.+
T Consensus 192 ---------------~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l--~~L~~L~L~~n~l 254 (452)
T 3zyi_A 192 ---------------FEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGL--SSLKKLWVMNSQV 254 (452)
T ss_dssp ---------------TTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCCSEECGGGGTTC--TTCCEEECTTSCC
T ss_pred ---------------ccCCCCCCEEECCCCcccccccccccccccEEECcCCcCcccCcccccCc--cCCCEEEeCCCcC
Confidence 44555566666666666666666666677777777776665444444322 1244444443333
Q ss_pred ccccCCccCCceeEEEcCCccccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccc
Q 045270 288 VGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTG 357 (440)
Q Consensus 288 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 357 (440)
....+. ....+++|+.|+|++|.++ .++...+..+++|+.|++++|.+..
T Consensus 255 ~~~~~~-------------------~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~Np~~C 304 (452)
T 3zyi_A 255 SLIERN-------------------AFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPWNC 304 (452)
T ss_dssp CEECTT-------------------TTTTCTTCCEEECCSSCCS-CCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred ceECHH-------------------HhcCCCCCCEEECCCCcCC-ccChHHhccccCCCEEEccCCCcCC
Confidence 322111 0112346777777777776 5555555557888888888887754
No 64
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=4.7e-24 Score=188.64 Aligned_cols=217 Identities=21% Similarity=0.265 Sum_probs=146.1
Q ss_pred CCCCcceeeeeeCCCCceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccc
Q 045270 6 STDCCDWSGVDCDEAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFA 85 (440)
Q Consensus 6 ~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~ 85 (440)
+++.|.|.++.|.....+++++++++.++. +|. .+. +++++|++++|.+... .+..|.++++|++|++++|.+.
T Consensus 1 ~~~~C~~~~~~C~c~~~~~~l~~~~~~l~~-ip~--~~~--~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~ 74 (270)
T 2o6q_A 1 NEALCKKDGGVCSCNNNKNSVDCSSKKLTA-IPS--NIP--ADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLNDNKLQ 74 (270)
T ss_dssp CCCCBGGGTCSBEEETTTTEEECTTSCCSS-CCS--CCC--TTCSEEECCSSCCSCC-CTTSSSSCTTCCEEECCSSCCS
T ss_pred CCccCCCCCCCCEeCCCCCEEEccCCCCCc-cCC--CCC--CCCCEEECcCCCCCee-CHHHhcCCCCCCEEECCCCccC
Confidence 368999999999776778899999998875 444 332 6899999999988764 4557888999999999999988
Q ss_pred cCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCcc
Q 045270 86 GHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRL 165 (440)
Q Consensus 86 ~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~ 165 (440)
...+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+....+..+..+ ++|++|++++|.+
T Consensus 75 ~i~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--------~~L~~L~Ls~n~l 145 (270)
T 2o6q_A 75 TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL--------TKLTYLSLGYNEL 145 (270)
T ss_dssp CCCTTTTSSCTTCCEEECCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTC--------TTCCEEECCSSCC
T ss_pred eeChhhhcCCCCCCEEECCCCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcC--------cCCCEEECCCCcC
Confidence 555555688899999999998887 4444456777777777777777764444334333 5677777777666
Q ss_pred CCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCC-
Q 045270 166 RGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN- 244 (440)
Q Consensus 166 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~- 244 (440)
....+..+..+++|++|++++|.+. .++...+..+ ++|+.|++++|.++.++.
T Consensus 146 ~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l-------------------------~~L~~L~L~~N~l~~~~~~ 199 (270)
T 2o6q_A 146 QSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKL-------------------------TELKTLKLDNNQLKRVPEG 199 (270)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTC-------------------------TTCCEEECCSSCCSCCCTT
T ss_pred CccCHhHccCCcccceeEecCCcCc-EeChhHhccC-------------------------CCcCEEECCCCcCCcCCHH
Confidence 6333333555566666666665554 3333334444 445555555555544443
Q ss_pred -CcccCcccEEeccCccccc
Q 045270 245 -LKNQSQLQYLYLSENQISR 263 (440)
Q Consensus 245 -~~~~~~L~~L~l~~~~~~~ 263 (440)
+..+++|+.|++++|.+..
T Consensus 200 ~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 200 AFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TTTTCTTCCEEECCSSCBCC
T ss_pred HhccccCCCEEEecCCCeeC
Confidence 4555666666666665543
No 65
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.92 E-value=1.1e-23 Score=191.21 Aligned_cols=233 Identities=20% Similarity=0.237 Sum_probs=191.1
Q ss_pred ccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccce
Q 045270 45 SLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLV 124 (440)
Q Consensus 45 ~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~ 124 (440)
..++++.|+++++.+. .+|..+..+++|++|++++|.+. .+|..+.++++|++|++++|.+. .++. .+..+++|+
T Consensus 79 ~~~~l~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~-~l~~l~~L~ 153 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP--QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPA-SIASLNRLR 153 (328)
T ss_dssp TSTTCCEEEEESSCCS--SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCG-GGGGCTTCC
T ss_pred cccceeEEEccCCCch--hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcH-HHhcCcCCC
Confidence 4589999999999996 37888999999999999999999 89999999999999999999998 5554 589999999
Q ss_pred EEEecCCccCCCCCcccccccc-ccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCC
Q 045270 125 YAVLSDNSLNGSIPRSMFEFPI-FSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGN 203 (440)
Q Consensus 125 ~L~l~~~~~~~~~~~~~~~l~~-l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 203 (440)
+|++++|...+.+|..+..... -.+..+++|++|++++|.+. .+|..+..+++|++|++++|.+. .++. .+..+++
T Consensus 154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~-~l~~l~~ 230 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGP-AIHHLPK 230 (328)
T ss_dssp EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCG-GGGGCTT
T ss_pred EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCch-hhccCCC
Confidence 9999999888888887754100 00023478999999999998 78888999999999999999987 4443 4789999
Q ss_pred CcEEEcCCCcccccCCccccCCccccceeecCCCCCC-CCCC-CcccCcccEEeccCcccccccCcccccccccceeEEE
Q 045270 204 LAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR-EIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLN 281 (440)
Q Consensus 204 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 281 (440)
|+.|++++|.+....+.. +..+++|+.|++++|.+. .+|. +..+++|+.|++++|.+.+.+|..+..... ++.+.
T Consensus 231 L~~L~Ls~n~~~~~~p~~-~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~--L~~l~ 307 (328)
T 4fcg_A 231 LEELDLRGCTALRNYPPI-FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA--NCIIL 307 (328)
T ss_dssp CCEEECTTCTTCCBCCCC-TTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT--TCEEE
T ss_pred CCEEECcCCcchhhhHHH-hcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccC--ceEEe
Confidence 999999998887665554 778889999999998654 5665 888999999999999988888888765443 77776
Q ss_pred ccCcccc
Q 045270 282 LSHNLLV 288 (440)
Q Consensus 282 l~~~~~~ 288 (440)
+..+.+.
T Consensus 308 l~~~~~~ 314 (328)
T 4fcg_A 308 VPPHLQA 314 (328)
T ss_dssp CCGGGSC
T ss_pred CCHHHHH
Confidence 6655443
No 66
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=5.2e-27 Score=231.92 Aligned_cols=399 Identities=15% Similarity=0.097 Sum_probs=240.3
Q ss_pred CceEEEeeccceeecccC---C----------CccccccCCCCeEEecCCccCCCccccchh-cCCCCcEEEcccC-ccc
Q 045270 21 GHVIGLDLSTESISGGIE---N----------AASLFSLHYLRSLNLARTSFNGTQIPSKLA-NISSLTYLNLSDA-GFA 85 (440)
Q Consensus 21 ~~l~~L~l~~~~~~~~~~---~----------~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~-~l~~L~~L~l~~~-~~~ 85 (440)
+++++|+++++....... . ......+++|++|+++++.+... .+..+. .+++|++|++++| .+.
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-~~~~l~~~~~~L~~L~L~~~~~~~ 144 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDD-CLELIAKSFKNFKVLVLSSCEGFS 144 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHH-HHHHHHHHCTTCCEEEEESCEEEE
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHH-HHHHHHHhCCCCcEEeCCCcCCCC
Confidence 789999999976432221 1 01235788999999999887655 444554 6899999999988 444
Q ss_pred cC-CcccccccccCceecCCCCcccCccch---hhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcC
Q 045270 86 GH-IPLQISSMARLVALDFSFNQFSGSISS---IRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLS 161 (440)
Q Consensus 86 ~~-~~~~~~~l~~L~~L~L~~~~~~~~~~~---~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~ 161 (440)
.. ++..+.++++|++|++++|.+.+.... .....+++|++|++++|. .......+..+. ..+++|++|+++
T Consensus 145 ~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~-~~~~~~~l~~l~----~~~~~L~~L~L~ 219 (594)
T 2p1m_B 145 TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA-SEVSFSALERLV----TRCPNLKSLKLN 219 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC-SCCCHHHHHHHH----HHCTTCCEEECC
T ss_pred HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC-CcCCHHHHHHHH----HhCCCCcEEecC
Confidence 22 444455889999999999987643322 123367799999999886 111112222221 235789999999
Q ss_pred CCccCCccccccccccCccEEeccccc-------cccccchhhHhcCCCCcEE-EcCCCcccccCCccccCCccccceee
Q 045270 162 GNRLRGSIPVSVFELKKLTSLLLSSNN-------LHGTVQLDKILNLGNLAKL-DLSYNSLAVDESSRNYSFSPMLELLN 233 (440)
Q Consensus 162 ~~~~~~~~~~~~~~~~~L~~L~l~~~~-------~~~~~~~~~~~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~~L~~L~ 233 (440)
+|.....++..+..+++|++|.+..+. +. ... ..+.++++|+.+ .+.+.... ........+++|+.|+
T Consensus 220 ~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~-~~l~~~~~L~~Ls~~~~~~~~--~l~~~~~~~~~L~~L~ 295 (594)
T 2p1m_B 220 RAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLS-VALSGCKELRCLSGFWDAVPA--YLPAVYSVCSRLTTLN 295 (594)
T ss_dssp TTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHH-HHHHTCTTCCEEECCBTCCGG--GGGGGHHHHTTCCEEE
T ss_pred CCCcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHH-HHHhcCCCcccccCCcccchh--hHHHHHHhhCCCCEEE
Confidence 883222466677788999999865543 22 122 256778888887 33332211 1111133567788888
Q ss_pred cCCCCCCC--CCC-CcccCcccEEeccCcccccccCcccccccccceeEEEccCc---------cccccc--CC-ccCCc
Q 045270 234 LASCKLRE--IPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHN---------LLVGFQ--GP-YSIPA 298 (440)
Q Consensus 234 l~~~~l~~--l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~---------~~~~~~--~~-~~~~~ 298 (440)
+++|.++. +.. +..+++|+.|++++| +.......+. ...++|++|++..+ .++... .. ..+++
T Consensus 296 L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~-~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~ 373 (594)
T 2p1m_B 296 LSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLA-STCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPK 373 (594)
T ss_dssp CTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHH-HHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTT
T ss_pred ccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHH-HhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchh
Confidence 88887552 222 456788888888877 3322111111 12455888877432 222111 00 13677
Q ss_pred eeEEEcCCccccCccc----CCCCCccEEEcc--C----CcccccCCcc-----ccccCCCcceEecccccccccchhhh
Q 045270 299 LRFIDLSSHQLRGNIH----QLPNNLIYIDFS--N----NNFTSSIPAD-----TGNFMPRLRYFCAANNGLTGIIPASL 363 (440)
Q Consensus 299 L~~L~l~~~~~~~~~~----~~~~~L~~L~L~--~----~~~~~~~~~~-----~~~~~~~L~~L~l~~~~l~~~~~~~~ 363 (440)
|++|.+..+.+.+... ..+++|+.|+++ + +.++ ..|.. +...+++|+.|++++ .+++..+..+
T Consensus 374 L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l 451 (594)
T 2p1m_B 374 LESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT-LEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYI 451 (594)
T ss_dssp CCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT-CCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHH
T ss_pred HHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc-CCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHH
Confidence 8888776666654221 225678888887 3 3333 22211 123367888888866 5554444455
Q ss_pred hc-cCCCCEEEcCCCcCCCCCchh---hhccccEEECCCCcccCCchh-hhhcCCCCcEEECCCCcccccCcccc
Q 045270 364 CN-ATTLSLLDLSNNSFMKKSDAF---LNCLLQTLDLNGNRLQGTVPK-SIANCKMLEVLNLGNNQFSDKFPCWL 433 (440)
Q Consensus 364 ~~-~~~L~~L~l~~n~i~~~~~~~---~~~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~l 433 (440)
.. +++|++|++++|.+++..... ..++|++|++++|.+++..+. .+..+++|+.|++++|+++......+
T Consensus 452 ~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l 526 (594)
T 2p1m_B 452 GTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLL 526 (594)
T ss_dssp HHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHH
T ss_pred HHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHH
Confidence 44 778888888888775542211 135688888888887654443 34457888888888887765444433
No 67
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=2.1e-23 Score=186.15 Aligned_cols=206 Identities=22% Similarity=0.221 Sum_probs=121.7
Q ss_pred CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCc-cccCCcccccccccCc
Q 045270 21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAG-FAGHIPLQISSMARLV 99 (440)
Q Consensus 21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~ 99 (440)
+++++|+++++.+++..+. .|..+++|++|++++|.+... .+..+..+++|++|++++|. +....|..+..+++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~--~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~ 108 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAA--SFRACRNLTILWLHSNVLARI-DAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLH 108 (285)
T ss_dssp TTCSEEECTTSCCCEECTT--TTTTCTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCC
T ss_pred CCceEEEeeCCcCCccCHH--HcccCCCCCEEECCCCcccee-CHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCC
Confidence 4566666666666654444 566666666666666666443 35556666666666666665 5544455666666666
Q ss_pred eecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCc
Q 045270 100 ALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKL 179 (440)
Q Consensus 100 ~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 179 (440)
+|++++|.+.+ ++...+..+++|++|++++|.+....+..+..+ ++|++|++++|.+....+..+..+++|
T Consensus 109 ~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l--------~~L~~L~l~~n~l~~~~~~~~~~l~~L 179 (285)
T 1ozn_A 109 TLHLDRCGLQE-LGPGLFRGLAALQYLYLQDNALQALPDDTFRDL--------GNLTHLFLHGNRISSVPERAFRGLHSL 179 (285)
T ss_dssp EEECTTSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC--------TTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred EEECCCCcCCE-ECHhHhhCCcCCCEEECCCCcccccCHhHhccC--------CCccEEECCCCcccccCHHHhcCcccc
Confidence 66666666653 323345666666666666666653333333322 566666666666653333345666666
Q ss_pred cEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCC
Q 045270 180 TSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR 240 (440)
Q Consensus 180 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 240 (440)
++|++++|.+. ...+..+..+++|+.|++++|.++...... +..+++|+.|++++|.+.
T Consensus 180 ~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~N~~~ 238 (285)
T 1ozn_A 180 DRLLLHQNRVA-HVHPHAFRDLGRLMTLYLFANNLSALPTEA-LAPLRALQYLRLNDNPWV 238 (285)
T ss_dssp CEEECCSSCCC-EECTTTTTTCTTCCEEECCSSCCSCCCHHH-HTTCTTCCEEECCSSCEE
T ss_pred CEEECCCCccc-ccCHhHccCcccccEeeCCCCcCCcCCHHH-cccCcccCEEeccCCCcc
Confidence 66666666665 333345566666666666666665443322 455666666666666554
No 68
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.91 E-value=1.6e-26 Score=228.41 Aligned_cols=414 Identities=15% Similarity=0.054 Sum_probs=276.8
Q ss_pred ceeeeeeCCCCceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCC-c-c------------ccchhcCCCCcE
Q 045270 11 DWSGVDCDEAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGT-Q-I------------PSKLANISSLTY 76 (440)
Q Consensus 11 ~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~-l------------~~~~~~l~~L~~ 76 (440)
.|.++.. ...+.++++.+... .+ ...+..+++|++|+++++..... . . ......+++|++
T Consensus 36 ~W~~~~~---~~~~~l~~~~~~~~--~~-~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~ 109 (594)
T 2p1m_B 36 SWYEIER---WCRRKVFIGNCYAV--SP-ATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEE 109 (594)
T ss_dssp HHHHHHH---HHCCEEEESSTTSS--CH-HHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCE
T ss_pred HHHHhhh---hhceEEeecccccc--CH-HHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCe
Confidence 4777622 23356666654322 11 12577899999999998763211 0 1 122356899999
Q ss_pred EEcccCccccCCccccc-ccccCceecCCCC-cccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCccc
Q 045270 77 LNLSDAGFAGHIPLQIS-SMARLVALDFSFN-QFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSA 154 (440)
Q Consensus 77 L~l~~~~~~~~~~~~~~-~l~~L~~L~L~~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~ 154 (440)
|+++++.+.+..+..+. .+++|++|++++| .+........+..+++|++|++++|.+++..+..+..++ ..+++
T Consensus 110 L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~----~~~~~ 185 (594)
T 2p1m_B 110 IRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP----DTYTS 185 (594)
T ss_dssp EEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC----TTCCC
T ss_pred EEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh----hcCCc
Confidence 99999988766666665 6899999999999 444322333456899999999999998766666665554 46789
Q ss_pred ccEEEcCCCc--cCC-ccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcc-------cccCCccccC
Q 045270 155 LDTLDLSGNR--LRG-SIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSL-------AVDESSRNYS 224 (440)
Q Consensus 155 L~~L~l~~~~--~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~-------~~~~~~~~~~ 224 (440)
|++|+++++. +.. .+...+..+++|++|++.+|..... ....+..+++|+.|++..+.. ..... .+.
T Consensus 186 L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~--~l~ 262 (594)
T 2p1m_B 186 LVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV--ALS 262 (594)
T ss_dssp CCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH--HHH
T ss_pred CcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHHHHH--HHh
Confidence 9999999886 221 1222234579999999999843223 345677899999999766532 11111 256
Q ss_pred Ccccccee-ecCCCCCCCCCC-CcccCcccEEeccCcccccccCcccccccccceeEEEccCcccccc--cCC-ccCCce
Q 045270 225 FSPMLELL-NLASCKLREIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGF--QGP-YSIPAL 299 (440)
Q Consensus 225 ~~~~L~~L-~l~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~-~~~~~L 299 (440)
.+++|+.+ .+.+.....++. +..+++|++|++++|.+.+.....+. ...++|++|++++| +... ... ..+++|
T Consensus 263 ~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~-~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L 340 (594)
T 2p1m_B 263 GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLL-CQCPKLQRLWVLDY-IEDAGLEVLASTCKDL 340 (594)
T ss_dssp TCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHH-TTCTTCCEEEEEGG-GHHHHHHHHHHHCTTC
T ss_pred cCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHH-hcCCCcCEEeCcCc-cCHHHHHHHHHhCCCC
Confidence 77888888 444444344554 44789999999999986543322211 24467999999988 3211 111 248999
Q ss_pred eEEEcCC---------ccccCcc----cCCCCCccEEEccCCcccccCCccccccCCCcceEecc--c----cccccc--
Q 045270 300 RFIDLSS---------HQLRGNI----HQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAA--N----NGLTGI-- 358 (440)
Q Consensus 300 ~~L~l~~---------~~~~~~~----~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~--~----~~l~~~-- 358 (440)
++|++.+ +.+.+.. ...+++|+.|.+..+.+++.....+...+++|+.|++. + +.+++.
T Consensus 341 ~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~ 420 (594)
T 2p1m_B 341 RELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPL 420 (594)
T ss_dssp CEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCT
T ss_pred CEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCch
Confidence 9999843 3333211 12367999999888888754444444458999999999 3 455522
Q ss_pred ---chhhhhccCCCCEEEcCCCcCCCCCchhh---hccccEEECCCCcccCCchhhh-hcCCCCcEEECCCCcccccCcc
Q 045270 359 ---IPASLCNATTLSLLDLSNNSFMKKSDAFL---NCLLQTLDLNGNRLQGTVPKSI-ANCKMLEVLNLGNNQFSDKFPC 431 (440)
Q Consensus 359 ---~~~~~~~~~~L~~L~l~~n~i~~~~~~~~---~~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~l~~n~~~~~~~~ 431 (440)
.+..+..+++|++|++++ .+++...... .++|+.|++++|.+++..+..+ ..+++|+.|++++|++++..+.
T Consensus 421 ~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~ 499 (594)
T 2p1m_B 421 DIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALL 499 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHH
T ss_pred hhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHH
Confidence 223367889999999977 5554422111 4569999999999987766666 7799999999999999766544
Q ss_pred -cccCCCCCC
Q 045270 432 -WLYDAPSLH 440 (440)
Q Consensus 432 -~l~~~~~L~ 440 (440)
.+..+++|+
T Consensus 500 ~~~~~l~~L~ 509 (594)
T 2p1m_B 500 ANASKLETMR 509 (594)
T ss_dssp HTGGGGGGSS
T ss_pred HHHHhCCCCC
Confidence 333355543
No 69
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=6.8e-25 Score=198.69 Aligned_cols=255 Identities=17% Similarity=0.198 Sum_probs=194.0
Q ss_pred ccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCcccccee
Q 045270 153 SALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELL 232 (440)
Q Consensus 153 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 232 (440)
..++..+++.+.+.......+..+++|++|++++|.+. ...+..+..+++|+.|++++|.++...+ +..+++|+.|
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L 85 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTL 85 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCC-CCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEE
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccC-cCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEE
Confidence 34666777777665334444556789999999999997 5666778999999999999999875543 6788999999
Q ss_pred ecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEEccCcccccccCC--ccCCceeEEEcCCcccc
Q 045270 233 NLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGP--YSIPALRFIDLSSHQLR 310 (440)
Q Consensus 233 ~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~l~~~~~~ 310 (440)
++++|.++.++ ..++|+.|++++|.+.+..+.. .++|++|++++|.++...+. ..+++|++|++++|.+.
T Consensus 86 ~Ls~n~l~~l~---~~~~L~~L~l~~n~l~~~~~~~-----~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 157 (317)
T 3o53_A 86 DLNNNYVQELL---VGPSIETLHAANNNISRVSCSR-----GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157 (317)
T ss_dssp ECCSSEEEEEE---ECTTCCEEECCSSCCSEEEECC-----CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCC
T ss_pred ECcCCcccccc---CCCCcCEEECCCCccCCcCccc-----cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCC
Confidence 99999888765 3489999999999887654433 34599999999998887653 45788999999888877
Q ss_pred CcccC----CCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchh
Q 045270 311 GNIHQ----LPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAF 386 (440)
Q Consensus 311 ~~~~~----~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~ 386 (440)
+..+. .+++|++|++++|.+. .++.... +++|+.|++++|.+++. +..+..+++|++|++++|.++.++..+
T Consensus 158 ~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~--l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~l~~~~ 233 (317)
T 3o53_A 158 TVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV--FAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLIEKAL 233 (317)
T ss_dssp EEEGGGGGGGTTTCCEEECTTSCCC-EEECCCC--CTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCEECTTC
T ss_pred cccHHHHhhccCcCCEEECCCCcCc-ccccccc--cccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcccchhhHh
Confidence 64322 3578888888888887 3333322 78888888888888854 444888888888888888888776554
Q ss_pred h-hccccEEECCCCccc-CCchhhhhcCCCCcEEECCCC
Q 045270 387 L-NCLLQTLDLNGNRLQ-GTVPKSIANCKMLEVLNLGNN 423 (440)
Q Consensus 387 ~-~~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n 423 (440)
. .++|+.|++++|++. +..+..+..+++|+.++++++
T Consensus 234 ~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 234 RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp CCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 3 356888888888888 566777888888888888744
No 70
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=1.1e-24 Score=196.80 Aligned_cols=247 Identities=23% Similarity=0.272 Sum_probs=171.7
Q ss_pred CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchh-------cCCCCcEEEcccCccccCCcccc-
Q 045270 21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLA-------NISSLTYLNLSDAGFAGHIPLQI- 92 (440)
Q Consensus 21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~-------~l~~L~~L~l~~~~~~~~~~~~~- 92 (440)
++++++++++|.+ .+|. .+... |+.|+++++.+....++..+. .+++|++|++++|.+.+.+|..+
T Consensus 43 ~~L~~l~l~~n~l--~~p~--~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 43 RSLEYLLKRVDTE--ADLG--QFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EECTTHHHHCCTT--CCCH--HHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred CCceeEeeccccc--ccHH--HHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 4566777777776 3443 34444 777888887775444565554 67888888888888877777765
Q ss_pred -cccccCceecCCCCcccCccchhhhccc-----ccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccC
Q 045270 93 -SSMARLVALDFSFNQFSGSISSIRWEHL-----LNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLR 166 (440)
Q Consensus 93 -~~l~~L~~L~L~~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~ 166 (440)
..+++|++|++++|.+.+. + ..+..+ ++|++|++++|.+.+..|..+..+ ++|++|++++|.+.
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~-~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l--------~~L~~L~Ls~N~l~ 186 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-D-AWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF--------PALSTLDLSDNPEL 186 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-S-SHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC--------SSCCEEECCSCTTC
T ss_pred HhcCCCccEEEccCCCCcch-h-HHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC--------CCCCEEECCCCCcC
Confidence 7788888888888888755 3 245555 788888888888876555666544 67888888888765
Q ss_pred Cc--ccccc--ccccCccEEecccccccc--ccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCC
Q 045270 167 GS--IPVSV--FELKKLTSLLLSSNNLHG--TVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR 240 (440)
Q Consensus 167 ~~--~~~~~--~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 240 (440)
+. .+..+ ..+++|++|++++|.+.+ ......+..+++|+.|++++|.++...+...+..+++|+.|++++|.++
T Consensus 187 ~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~ 266 (312)
T 1wwl_A 187 GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK 266 (312)
T ss_dssp HHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS
T ss_pred cchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC
Confidence 33 22233 677888888888887762 2223445577888888888888776554333556778888888888888
Q ss_pred CCCC-CcccCcccEEeccCcccccccCcccccccccceeEEEccCccccc
Q 045270 241 EIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVG 289 (440)
Q Consensus 241 ~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 289 (440)
.+|. +. ++|+.|++++|++++. |. +. ..++|++|++++|.+++
T Consensus 267 ~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~--~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 267 QVPKGLP--AKLSVLDLSYNRLDRN-PS-PD--ELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SCCSSCC--SEEEEEECCSSCCCSC-CC-TT--TSCEEEEEECTTCTTTC
T ss_pred hhhhhcc--CCceEEECCCCCCCCC-hh-Hh--hCCCCCEEeccCCCCCC
Confidence 7776 33 7888888888888654 44 33 34558888888887754
No 71
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.90 E-value=9.4e-24 Score=191.20 Aligned_cols=239 Identities=16% Similarity=0.145 Sum_probs=170.3
Q ss_pred ceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCcee
Q 045270 22 HVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVAL 101 (440)
Q Consensus 22 ~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 101 (440)
+++..+++.+.+...... .+..+++|++|++++|.+... .+..+..+++|++|++++|.+.+..+ +..+++|++|
T Consensus 11 ~l~i~~ls~~~l~~~~~~--~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L 85 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALAS--LRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTL 85 (317)
T ss_dssp EEEEESCCTTTHHHHHHH--HHTTGGGCSEEECTTSCCCCC-CHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEE
T ss_pred ceeEeeccccchhhhHHH--HhccCCCCCEEECcCCccCcC-CHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEE
Confidence 455566666666543333 566778999999999988765 56788899999999999998875443 8889999999
Q ss_pred cCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccE
Q 045270 102 DFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTS 181 (440)
Q Consensus 102 ~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 181 (440)
++++|.+.+ +...++|++|++++|.+.+..+.. +++|++|++++|.+....+..+..+++|++
T Consensus 86 ~Ls~n~l~~------l~~~~~L~~L~l~~n~l~~~~~~~-----------~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~ 148 (317)
T 3o53_A 86 DLNNNYVQE------LLVGPSIETLHAANNNISRVSCSR-----------GQGKKNIYLANNKITMLRDLDEGCRSRVQY 148 (317)
T ss_dssp ECCSSEEEE------EEECTTCCEEECCSSCCSEEEECC-----------CSSCEEEECCSSCCCSGGGBCTGGGSSEEE
T ss_pred ECcCCcccc------ccCCCCcCEEECCCCccCCcCccc-----------cCCCCEEECCCCCCCCccchhhhccCCCCE
Confidence 999998773 224488999999999887433322 267889999999888666667778888999
Q ss_pred EeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCC-CcccCcccEEeccCcc
Q 045270 182 LLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQ 260 (440)
Q Consensus 182 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~L~~L~l~~~~ 260 (440)
|++++|.+.+..+...+..+++|+.|++++|.++.... ...+++|+.|++++|.++.++. +..+++|+.|++++|.
T Consensus 149 L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~ 225 (317)
T 3o53_A 149 LDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG---QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNK 225 (317)
T ss_dssp EECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC---CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSC
T ss_pred EECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc---ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCc
Confidence 99988888743333333467888888888888765532 2347778888888888877755 7777788888888877
Q ss_pred cccccCcccccccccceeEEEccCcccc
Q 045270 261 ISREIPNWIWRVSVVGLHCLNLSHNLLV 288 (440)
Q Consensus 261 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 288 (440)
+.+ +|..+.. .++|+.|++++|.+.
T Consensus 226 l~~-l~~~~~~--l~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 226 LVL-IEKALRF--SQNLEHFDLRGNGFH 250 (317)
T ss_dssp CCE-ECTTCCC--CTTCCEEECTTCCCB
T ss_pred ccc-hhhHhhc--CCCCCEEEccCCCcc
Confidence 763 4443322 233555555555443
No 72
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=1.7e-23 Score=200.21 Aligned_cols=235 Identities=22% Similarity=0.243 Sum_probs=138.0
Q ss_pred ccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCcccccee
Q 045270 153 SALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELL 232 (440)
Q Consensus 153 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 232 (440)
++|++|++++|.+.+..|..|..+++|++|++++|.+.+..+ +..+++|+.|++++|.++... ..++|+.|
T Consensus 34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~l~~l~------~~~~L~~L 104 (487)
T 3oja_A 34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELL------VGPSIETL 104 (487)
T ss_dssp GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE---CTTCTTCCEEECCSSEEEEEE------ECTTCCEE
T ss_pred CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc---cccCCCCCEEEecCCcCCCCC------CCCCcCEE
Confidence 456666666666654445556666666666666666553222 555666666666666554322 12456666
Q ss_pred ecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEEccCcccccccCCccCCceeEEEcCCccccCc
Q 045270 233 NLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGN 312 (440)
Q Consensus 233 ~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 312 (440)
++++|.++.++. ..+++|+.|++++|.+++..+..+.. .++|+.|++++|.++...+. .
T Consensus 105 ~L~~N~l~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~--l~~L~~L~Ls~N~l~~~~~~------------------~ 163 (487)
T 3oja_A 105 HAANNNISRVSC-SRGQGKKNIYLANNKITMLRDLDEGC--RSRVQYLDLKLNEIDTVNFA------------------E 163 (487)
T ss_dssp ECCSSCCCCEEE-CCCSSCEEEECCSSCCCSGGGBCGGG--GSSEEEEECTTSCCCEEEGG------------------G
T ss_pred ECcCCcCCCCCc-cccCCCCEEECCCCCCCCCCchhhcC--CCCCCEEECCCCCCCCcChH------------------H
Confidence 666666655543 23455666666666655444433322 22244444443333322111 0
Q ss_pred ccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchhh-hccc
Q 045270 313 IHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFL-NCLL 391 (440)
Q Consensus 313 ~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~-~~~L 391 (440)
+...+++|+.|+|++|.+.+. +... .+++|+.|++++|.+++..+ .+..+++|+.|++++|.+..+|..+. .++|
T Consensus 164 l~~~l~~L~~L~Ls~N~l~~~-~~~~--~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L 239 (487)
T 3oja_A 164 LAASSDTLEHLNLQYNFIYDV-KGQV--VFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVLIEKALRFSQNL 239 (487)
T ss_dssp GGGGTTTCCEEECTTSCCCEE-ECCC--CCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCEECTTCCCCTTC
T ss_pred HhhhCCcccEEecCCCccccc-cccc--cCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcccchhhccCCCC
Confidence 011234667777777776633 3222 27888888888888886444 47788888888888888887765543 3568
Q ss_pred cEEECCCCccc-CCchhhhhcCCCCcEEECC
Q 045270 392 QTLDLNGNRLQ-GTVPKSIANCKMLEVLNLG 421 (440)
Q Consensus 392 ~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~ 421 (440)
+.|++++|++. +..|..+..++.|+.++++
T Consensus 240 ~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp CEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 88888888887 4556667777777777765
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.88 E-value=2.4e-22 Score=192.29 Aligned_cols=218 Identities=17% Similarity=0.163 Sum_probs=145.9
Q ss_pred ccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccce
Q 045270 45 SLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLV 124 (440)
Q Consensus 45 ~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~ 124 (440)
.+++|++|++++|.+... .|..|..+++|++|++++|.+.+..| +..+++|++|++++|.+.+. ...++|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l------~~~~~L~ 102 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL------LVGPSIE 102 (487)
T ss_dssp TGGGCCEEECCSSCCCCC-CGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE------EECTTCC
T ss_pred cCCCccEEEeeCCcCCCC-CHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC------CCCCCcC
Confidence 445788888888877664 56677778888888888887775444 77788888888888877632 2237788
Q ss_pred EEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCC
Q 045270 125 YAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNL 204 (440)
Q Consensus 125 ~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 204 (440)
+|++++|.+.+..+.. +++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+......+++|
T Consensus 103 ~L~L~~N~l~~~~~~~-----------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L 171 (487)
T 3oja_A 103 TLHAANNNISRVSCSR-----------GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171 (487)
T ss_dssp EEECCSSCCCCEEECC-----------CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTC
T ss_pred EEECcCCcCCCCCccc-----------cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcc
Confidence 8888888776433322 25678888888887766666777778888888888877643333323367778
Q ss_pred cEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCC-CcccCcccEEeccCcccccccCcccccccccceeEEEcc
Q 045270 205 AKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLS 283 (440)
Q Consensus 205 ~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 283 (440)
+.|++++|.++.... ...+++|+.|++++|.++.+|. +..+++|+.|++++|.+.+ +|..+.. .++|+.++++
T Consensus 172 ~~L~Ls~N~l~~~~~---~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~--l~~L~~L~l~ 245 (487)
T 3oja_A 172 EHLNLQYNFIYDVKG---QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL-IEKALRF--SQNLEHFDLR 245 (487)
T ss_dssp CEEECTTSCCCEEEC---CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCE-ECTTCCC--CTTCCEEECT
T ss_pred cEEecCCCccccccc---cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcc-cchhhcc--CCCCCEEEcC
Confidence 888888777765532 2346777777777777776655 6677777777777777663 4443322 2335556665
Q ss_pred Ccccc
Q 045270 284 HNLLV 288 (440)
Q Consensus 284 ~~~~~ 288 (440)
+|.+.
T Consensus 246 ~N~l~ 250 (487)
T 3oja_A 246 GNGFH 250 (487)
T ss_dssp TCCBC
T ss_pred CCCCc
Confidence 55554
No 74
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.88 E-value=2.1e-21 Score=172.27 Aligned_cols=207 Identities=20% Similarity=0.252 Sum_probs=144.2
Q ss_pred CCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEE
Q 045270 47 HYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYA 126 (440)
Q Consensus 47 ~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L 126 (440)
++|++|++++|.+... .+..+.++++|++|++++|.+.+..+..+.++++|++|++++|.+. .++...+..+++|++|
T Consensus 28 ~~l~~L~ls~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L 105 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL 105 (276)
T ss_dssp TTCCEEECTTCCCCEE-CTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEE
T ss_pred CCccEEECCCCccccc-CHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC-ccChhhhcCCccccEE
Confidence 4677777777776543 3446677777777777777776555556777777777777777776 3333356777777777
Q ss_pred EecCCccCCCCCccccccccccccCcccccEEEcCCCccCC-ccccccccccCccEEeccccccccccchhhHhcCCCCc
Q 045270 127 VLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRG-SIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLA 205 (440)
Q Consensus 127 ~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 205 (440)
++++|.+....+..+.. +++|++|++++|.+.. .+|..+..+++|++|++++|.+. .++...+..+.+|+
T Consensus 106 ~l~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~ 176 (276)
T 2z62_A 106 VAVETNLASLENFPIGH--------LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMP 176 (276)
T ss_dssp ECTTSCCCCSTTCCCTT--------CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC-EECGGGGHHHHTCT
T ss_pred ECCCCCccccCchhccc--------CCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC-cCCHHHhhhhhhcc
Confidence 77777776444434433 3678888888887764 24677778888888888888876 44444455555555
Q ss_pred ----EEEcCCCcccccCCccccCCccccceeecCCCCCCCCCC--CcccCcccEEeccCcccccccC
Q 045270 206 ----KLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIP 266 (440)
Q Consensus 206 ----~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~ 266 (440)
.|++++|.+....... +. ..+|+.|++++|.++.++. +..+++|+.|++++|.+....+
T Consensus 177 ~l~l~L~ls~n~l~~~~~~~-~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 177 LLNLSLDLSLNPMNFIQPGA-FK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp TCCEEEECCSSCCCEECTTS-SC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred ccceeeecCCCcccccCccc-cC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 7888888887655443 22 3478999999998888776 6788899999999988876543
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.87 E-value=8.6e-21 Score=167.64 Aligned_cols=202 Identities=21% Similarity=0.242 Sum_probs=124.2
Q ss_pred CCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEE
Q 045270 48 YLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAV 127 (440)
Q Consensus 48 ~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~ 127 (440)
..+.++++++.+.. +|..+. +++++|++++|.+.+..+.+|.++++|++|++++|.+. .++...+..+++|++|+
T Consensus 17 ~~~~l~~~~~~l~~--ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~ 91 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA--IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLW 91 (270)
T ss_dssp TTTEEECTTSCCSS--CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEE
T ss_pred CCCEEEccCCCCCc--cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEE
Confidence 45566666665543 444343 45666666666665444445666666666666666555 33333344455555555
Q ss_pred ecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEE
Q 045270 128 LSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKL 207 (440)
Q Consensus 128 l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 207 (440)
+++|.+ ....+..+..+++|++|++++|.+. .++...+..+++|+.|
T Consensus 92 l~~n~l--------------------------------~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L 138 (270)
T 2o6q_A 92 VTDNKL--------------------------------QALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYL 138 (270)
T ss_dssp CCSSCC--------------------------------CCCCTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred CCCCcC--------------------------------CcCCHhHcccccCCCEEECCCCccC-eeCHHHhCcCcCCCEE
Confidence 555544 4322333444555555555555554 3344445566666666
Q ss_pred EcCCCcccccCCccccCCccccceeecCCCCCCCCCC--CcccCcccEEeccCcccccccCcccccccccceeEEEccCc
Q 045270 208 DLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHN 285 (440)
Q Consensus 208 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 285 (440)
++++|.++...... +..+++|+.|++++|.++.++. +..+++|+.|++++|.+.+..+..+.. .++|+.|++++|
T Consensus 139 ~Ls~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~--l~~L~~L~l~~N 215 (270)
T 2o6q_A 139 SLGYNELQSLPKGV-FDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS--LEKLKMLQLQEN 215 (270)
T ss_dssp ECCSSCCCCCCTTT-TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT--CTTCCEEECCSS
T ss_pred ECCCCcCCccCHhH-ccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhcc--ccCCCEEEecCC
Confidence 66666665444333 5667788888888888887765 788999999999999998655554533 456999999999
Q ss_pred ccccc
Q 045270 286 LLVGF 290 (440)
Q Consensus 286 ~~~~~ 290 (440)
.+...
T Consensus 216 ~~~c~ 220 (270)
T 2o6q_A 216 PWDCT 220 (270)
T ss_dssp CBCCS
T ss_pred CeeCC
Confidence 87643
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.87 E-value=1.4e-21 Score=173.43 Aligned_cols=206 Identities=21% Similarity=0.190 Sum_probs=173.0
Q ss_pred CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCce
Q 045270 21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVA 100 (440)
Q Consensus 21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 100 (440)
.++++|++++|.+++..+. .+..+++|++|++++|.+... .+..+..+++|++|++++|.+.+..+..+.++++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSY--SFFSFPELQVLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104 (276)
T ss_dssp TTCCEEECTTCCCCEECTT--TTTTCTTCSEEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCE
T ss_pred CCccEEECCCCcccccCHh--HhccccCCcEEECCCCcCCcc-CHHHccCCcCCCEEECCCCccCccChhhhcCCccccE
Confidence 4699999999999876665 799999999999999998754 5567899999999999999999777788999999999
Q ss_pred ecCCCCcccCccchhhhcccccceEEEecCCccCCC-CCccccccccccccCcccccEEEcCCCccCCccccccccccCc
Q 045270 101 LDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGS-IPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKL 179 (440)
Q Consensus 101 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 179 (440)
|++++|.+.+ ++...+..+++|++|++++|.+... +|..+..+ ++|++|++++|.+.+..+..+..+++|
T Consensus 105 L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l--------~~L~~L~Ls~N~l~~~~~~~~~~l~~L 175 (276)
T 2z62_A 105 LVAVETNLAS-LENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL--------TNLEHLDLSSNKIQSIYCTDLRVLHQM 175 (276)
T ss_dssp EECTTSCCCC-STTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGC--------TTCCEEECCSSCCCEECGGGGHHHHTC
T ss_pred EECCCCCccc-cCchhcccCCCCCEEECcCCccceecCchhhccC--------CCCCEEECCCCCCCcCCHHHhhhhhhc
Confidence 9999999984 4444588999999999999999753 57777655 799999999999986666677777777
Q ss_pred c----EEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCC
Q 045270 180 T----SLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLRE 241 (440)
Q Consensus 180 ~----~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 241 (440)
+ +|++++|.+. .++...+. ..+|+.|++++|.++...... +..+++|+.|++++|.++.
T Consensus 176 ~~l~l~L~ls~n~l~-~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 176 PLLNLSLDLSLNPMN-FIQPGAFK-EIRLKELALDTNQLKSVPDGI-FDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp TTCCEEEECCSSCCC-EECTTSSC-SCCEEEEECCSSCCSCCCTTT-TTTCCSCCEEECCSSCBCC
T ss_pred cccceeeecCCCccc-ccCccccC-CCcccEEECCCCceeecCHhH-hcccccccEEEccCCcccc
Confidence 7 8999999987 45544443 348999999999998665543 6789999999999998873
No 77
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.87 E-value=5e-21 Score=170.54 Aligned_cols=204 Identities=24% Similarity=0.224 Sum_probs=160.8
Q ss_pred cccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccc
Q 045270 42 SLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLL 121 (440)
Q Consensus 42 ~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~ 121 (440)
.+++++++++++++++.+.. +|..+. +++++|++++|.+.+..+..+..+++|++|++++|.+++ ++. ...++
T Consensus 5 ~~~~l~~l~~l~~~~~~l~~--ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~--~~~l~ 77 (290)
T 1p9a_G 5 EVSKVASHLEVNCDKRNLTA--LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQV--DGTLP 77 (290)
T ss_dssp EEECSTTCCEEECTTSCCSS--CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EEC--CSCCT
T ss_pred cccccCCccEEECCCCCCCc--CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-ccC--CCCCC
Confidence 47788888888888887753 565554 688889999888887777788888899999999888873 333 26788
Q ss_pred cceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcC
Q 045270 122 NLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNL 201 (440)
Q Consensus 122 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 201 (440)
+|++|++++|.+. .+|..+..+ ++|++|++++|.+....+..|..+++|++|++++|.+. .++...|..+
T Consensus 78 ~L~~L~Ls~N~l~-~l~~~~~~l--------~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l 147 (290)
T 1p9a_G 78 VLGTLDLSHNQLQ-SLPLLGQTL--------PALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK-TLPPGLLTPT 147 (290)
T ss_dssp TCCEEECCSSCCS-SCCCCTTTC--------TTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC-CCCTTTTTTC
T ss_pred cCCEEECCCCcCC-cCchhhccC--------CCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC-ccChhhcccc
Confidence 8888999888887 677665444 68889999999888555567888889999999988887 5666667788
Q ss_pred CCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCC-CcccCcccEEeccCccccc
Q 045270 202 GNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQISR 263 (440)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~-~~~~~~L~~L~l~~~~~~~ 263 (440)
++|+.|++++|+++...... +..+++|+.|++++|.++.+|. +...+.|+.+++++|.+..
T Consensus 148 ~~L~~L~L~~N~l~~l~~~~-~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 148 PKLEKLSLANNNLTELPAGL-LNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp TTCCEEECTTSCCSCCCTTT-TTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCC
T ss_pred cCCCEEECCCCcCCccCHHH-hcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccC
Confidence 88999999988887655443 6678888999999998888877 6677788888888887753
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.87 E-value=2e-21 Score=171.83 Aligned_cols=209 Identities=21% Similarity=0.193 Sum_probs=150.3
Q ss_pred cccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccc
Q 045270 42 SLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLL 121 (440)
Q Consensus 42 ~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~ 121 (440)
....+++|+.|+++++.+... ..+..+++|++|++++|.+.+ + ..+..+++|++|++++|.+. .++...+..++
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~~---~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~ 109 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSDIKSV---QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQ-SLPNGVFDKLT 109 (272)
T ss_dssp CHHHHTTCCEEECTTSCCCCC---TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCC-CCCTTTTTTCT
T ss_pred ccccccceeeeeeCCCCcccc---cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccC-ccChhHhcCCc
Confidence 466778888888887776432 347778888888888887764 3 36778888888888888877 44444567788
Q ss_pred cceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcC
Q 045270 122 NLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNL 201 (440)
Q Consensus 122 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 201 (440)
+|++|++++|.+.+..+..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|.+. ..+...+..+
T Consensus 110 ~L~~L~L~~n~l~~~~~~~~~~l--------~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l 180 (272)
T 3rfs_A 110 NLKELVLVENQLQSLPDGVFDKL--------TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKL 180 (272)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTC--------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred CCCEEECCCCcCCccCHHHhccC--------CCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcC-ccCHHHhcCC
Confidence 88888888888774444444433 67888888888877555555677888888888888876 5555556778
Q ss_pred CCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEeccCcccccccCccccc
Q 045270 202 GNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWR 271 (440)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 271 (440)
++|+.|++++|.+....... +..+++|+.|++++|.+. ..++.++.++++.|.+++.+|.++..
T Consensus 181 ~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~l~~N~~~-----~~~~~l~~l~~~~n~~~g~ip~~~~~ 244 (272)
T 3rfs_A 181 TQLKDLRLYQNQLKSVPDGV-FDRLTSLQYIWLHDNPWD-----CTCPGIRYLSEWINKHSGVVRNSAGS 244 (272)
T ss_dssp TTCCEEECCSSCCSCCCTTT-TTTCTTCCEEECCSSCBC-----CCTTTTHHHHHHHHHTGGGBBCTTSC
T ss_pred ccCCEEECCCCcCCccCHHH-HhCCcCCCEEEccCCCcc-----ccCcHHHHHHHHHHhCCCcccCcccc
Confidence 88888888888877655433 667788888888888654 34667888888888888877776643
No 79
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.85 E-value=2.6e-20 Score=165.93 Aligned_cols=196 Identities=24% Similarity=0.270 Sum_probs=96.3
Q ss_pred hcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCC--CcccCcccEEeccCcccccccCcccccccccc
Q 045270 199 LNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVG 276 (440)
Q Consensus 199 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 276 (440)
..+++++.++++++.++..+... .+.++.|++++|.++.++. +..+++|+.|++++|.+++..+. ...++
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~----~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~l~~ 78 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDL----PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD----GTLPV 78 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCC----CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC----SCCTT
T ss_pred cccCCccEEECCCCCCCcCCCCC----CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC----CCCCc
Confidence 45556666666666665443221 2456666666666665532 55666666666666665432221 12334
Q ss_pred eeEEEccCcccccccCC-ccCCceeEEEcCCccccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccc
Q 045270 277 LHCLNLSHNLLVGFQGP-YSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGL 355 (440)
Q Consensus 277 L~~L~l~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 355 (440)
|+.|++++|.+..++.. ..+++|++|+ +++|.++ .++...+..+++|++|++++|.+
T Consensus 79 L~~L~Ls~N~l~~l~~~~~~l~~L~~L~---------------------l~~N~l~-~l~~~~~~~l~~L~~L~L~~N~l 136 (290)
T 1p9a_G 79 LGTLDLSHNQLQSLPLLGQTLPALTVLD---------------------VSFNRLT-SLPLGALRGLGELQELYLKGNEL 136 (290)
T ss_dssp CCEEECCSSCCSSCCCCTTTCTTCCEEE---------------------CCSSCCC-CCCSSTTTTCTTCCEEECTTSCC
T ss_pred CCEEECCCCcCCcCchhhccCCCCCEEE---------------------CCCCcCc-ccCHHHHcCCCCCCEEECCCCCC
Confidence 55555555555544432 2344444444 4444444 33322222245555555555555
Q ss_pred cccchhhhhccCCCCEEEcCCCcCCCCCchhh--hccccEEECCCCcccCCchhhhhcCCCCcEEECCCCcc
Q 045270 356 TGIIPASLCNATTLSLLDLSNNSFMKKSDAFL--NCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQF 425 (440)
Q Consensus 356 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 425 (440)
++..+..|..+++|+.|++++|+++.++...+ ..+|+.|++++|+++ .+|..+..+++|+.|++++|++
T Consensus 137 ~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 137 KTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred CccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 44444444445555555555555554443322 233555555555554 3333344444555555555544
No 80
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=2.1e-20 Score=163.22 Aligned_cols=191 Identities=23% Similarity=0.281 Sum_probs=146.6
Q ss_pred CCCcceeeeeeCCCCceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCcccc
Q 045270 7 TDCCDWSGVDCDEAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAG 86 (440)
Q Consensus 7 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~ 86 (440)
++|+.|.|..|.. ..++++++++.++. +|. .+. +.++.|++++|.+... .+..+.++++|++|++++|.+.+
T Consensus 2 ~~Cp~~~gC~C~~--~~~~l~~~~~~l~~-~p~--~~~--~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~ 73 (251)
T 3m19_A 2 KTCETVTGCTCNE--GKKEVDCQGKSLDS-VPS--GIP--ADTEKLDLQSTGLATL-SDATFRGLTKLTWLNLDYNQLQT 73 (251)
T ss_dssp --CHHHHSSEEEG--GGTEEECTTCCCSS-CCS--CCC--TTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCC
T ss_pred ccCCCCCceEcCC--CCeEEecCCCCccc-cCC--CCC--CCCCEEEccCCCcCcc-CHhHhcCcccCCEEECCCCcCCc
Confidence 4678899999963 34678999988874 443 333 6899999999998766 66678999999999999999997
Q ss_pred CCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccC
Q 045270 87 HIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLR 166 (440)
Q Consensus 87 ~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~ 166 (440)
..+..+..+++|++|++++|.+. .++...+..+++|++|++++|.++...+..+.. +++|++|++++|.+.
T Consensus 74 ~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~--------l~~L~~L~Ls~N~l~ 144 (251)
T 3m19_A 74 LSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR--------LTKLKELRLNTNQLQ 144 (251)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------CTTCCEEECCSSCCC
T ss_pred cCHhHhccCCcCCEEECCCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhcc--------CCcccEEECcCCcCC
Confidence 77777899999999999999998 455456788899999999999887433333333 368888888888887
Q ss_pred CccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCccc
Q 045270 167 GSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLA 215 (440)
Q Consensus 167 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 215 (440)
...+..+..+++|++|++++|.+. .++...+..+++|+.|++++|.+.
T Consensus 145 ~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 145 SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCCBC
T ss_pred ccCHHHcCcCcCCCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeCCcee
Confidence 544556777888888888888876 555556677777777777777764
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=6.4e-22 Score=181.05 Aligned_cols=262 Identities=19% Similarity=0.204 Sum_probs=190.8
Q ss_pred CcceeeeeeCCCCceEEEeeccceeecccCCCcccccc--CCCCeEEecCCccCCCccccchhcCCCCcEEEcccCcccc
Q 045270 9 CCDWSGVDCDEAGHVIGLDLSTESISGGIENAASLFSL--HYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAG 86 (440)
Q Consensus 9 ~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~ 86 (440)
|..|.++.++ ...+++++++++.+.. . .+..+ ++++.|+++++.+... .+ .+..+++|++|++++|.+.+
T Consensus 36 c~~W~~~~~~-~~~~~~l~l~~~~~~~---~--~~~~~~~~~l~~L~l~~n~l~~~-~~-~~~~~~~L~~L~L~~~~l~~ 107 (336)
T 2ast_B 36 CKRWYRLASD-ESLWQTLDLTGKNLHP---D--VTGRLLSQGVIAFRCPRSFMDQP-LA-EHFSPFRVQHMDLSNSVIEV 107 (336)
T ss_dssp CHHHHHHHTC-STTSSEEECTTCBCCH---H--HHHHHHHTTCSEEECTTCEECSC-CC-SCCCCBCCCEEECTTCEECH
T ss_pred HHHHHHHhcC-chhheeeccccccCCH---H--HHHhhhhccceEEEcCCcccccc-ch-hhccCCCCCEEEccCCCcCH
Confidence 3448888775 3568899999987762 2 56666 8999999999988664 33 35678999999999998875
Q ss_pred C-CcccccccccCceecCCCCcccCccchhhhcccccceEEEecCC-ccCCC-CCccccccccccccCcccccEEEcCCC
Q 045270 87 H-IPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDN-SLNGS-IPRSMFEFPIFSNASSSALDTLDLSGN 163 (440)
Q Consensus 87 ~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~~~~l~~l~~~~~~~L~~L~l~~~ 163 (440)
. ++..+..+++|++|++++|.+.+..+. .+..+++|++|++++| .+++. ++..+.. +++|++|++++|
T Consensus 108 ~~~~~~~~~~~~L~~L~L~~~~l~~~~~~-~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~--------~~~L~~L~l~~~ 178 (336)
T 2ast_B 108 STLHGILSQCSKLQNLSLEGLRLSDPIVN-TLAKNSNLVRLNLSGCSGFSEFALQTLLSS--------CSRLDELNLSWC 178 (336)
T ss_dssp HHHHHHHTTBCCCSEEECTTCBCCHHHHH-HHTTCTTCSEEECTTCBSCCHHHHHHHHHH--------CTTCCEEECCCC
T ss_pred HHHHHHHhhCCCCCEEeCcCcccCHHHHH-HHhcCCCCCEEECCCCCCCCHHHHHHHHhc--------CCCCCEEcCCCC
Confidence 4 777888999999999999987744443 5778999999999999 56532 4443433 478999999999
Q ss_pred -ccCCc-ccccccccc-CccEEeccccc--cccccchhhHhcCCCCcEEEcCCCc-ccccCCccccCCccccceeecCCC
Q 045270 164 -RLRGS-IPVSVFELK-KLTSLLLSSNN--LHGTVQLDKILNLGNLAKLDLSYNS-LAVDESSRNYSFSPMLELLNLASC 237 (440)
Q Consensus 164 -~~~~~-~~~~~~~~~-~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~L~~L~l~~~ 237 (440)
.+.+. ++..+..++ +|++|++++|. +........+..+++|+.|++++|. ++...... +..+++|+.|++++|
T Consensus 179 ~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 179 FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFQLNYLQHLSLSRC 257 (336)
T ss_dssp TTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG-GGGCTTCCEEECTTC
T ss_pred CCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH-HhCCCCCCEeeCCCC
Confidence 77643 466677888 99999999984 4422223456789999999999998 55444443 667899999999999
Q ss_pred C-CC--CCCCCcccCcccEEeccCcccccccCcccccccccceeEEEccCcccccccCC
Q 045270 238 K-LR--EIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGP 293 (440)
Q Consensus 238 ~-l~--~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 293 (440)
. +. .+..+..+++|+.|++++| +.......+ ...+..|++++|.+++..+.
T Consensus 258 ~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l----~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 258 YDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLL----KEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp TTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHH----HHHSTTSEESCCCSCCTTCS
T ss_pred CCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHH----HhhCcceEEecccCccccCC
Confidence 5 32 2223778999999999998 432221111 12366677888888776554
No 82
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.84 E-value=2.2e-20 Score=165.20 Aligned_cols=199 Identities=23% Similarity=0.212 Sum_probs=166.4
Q ss_pred CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCce
Q 045270 21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVA 100 (440)
Q Consensus 21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 100 (440)
.++++|+++++.++. .. .+..+++|++|++++|.+... ..+..+++|++|++++|.+.+..+..+..+++|++
T Consensus 41 ~~L~~L~l~~~~i~~--~~--~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 41 NSIDQIIANNSDIKS--VQ--GIQYLPNVRYLALGGNKLHDI---SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp TTCCEEECTTSCCCC--CT--TGGGCTTCCEEECTTSCCCCC---GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cceeeeeeCCCCccc--cc--ccccCCCCcEEECCCCCCCCc---hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 689999999998874 22 689999999999999998653 47889999999999999999777777899999999
Q ss_pred ecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCcc
Q 045270 101 LDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLT 180 (440)
Q Consensus 101 L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 180 (440)
|++++|.+. .++...+..+++|++|++++|.+++..+..+.. +++|++|++++|.+.+..+..+..+++|+
T Consensus 114 L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~--------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 184 (272)
T 3rfs_A 114 LVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK--------LTNLTELDLSYNQLQSLPEGVFDKLTQLK 184 (272)
T ss_dssp EECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT--------CTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred EECCCCcCC-ccCHHHhccCCCCCEEECCCCccCccCHHHhcc--------CccCCEEECCCCCcCccCHHHhcCCccCC
Confidence 999999998 455456899999999999999998544444444 47999999999999866666678899999
Q ss_pred EEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCC-CCCC
Q 045270 181 SLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLR-EIPN 244 (440)
Q Consensus 181 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~l~~ 244 (440)
+|++++|.+. ..+...+..+++|+.|++++|.+. ..++.++.+++..|.+. .+|.
T Consensus 185 ~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~--------~~~~~l~~l~~~~n~~~g~ip~ 240 (272)
T 3rfs_A 185 DLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDNPWD--------CTCPGIRYLSEWINKHSGVVRN 240 (272)
T ss_dssp EEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBC--------CCTTTTHHHHHHHHHTGGGBBC
T ss_pred EEECCCCcCC-ccCHHHHhCCcCCCEEEccCCCcc--------ccCcHHHHHHHHHHhCCCcccC
Confidence 9999999998 566567889999999999999874 34667888888888775 4554
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=4.3e-20 Score=166.20 Aligned_cols=196 Identities=19% Similarity=0.268 Sum_probs=145.5
Q ss_pred cccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccc
Q 045270 42 SLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLL 121 (440)
Q Consensus 42 ~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~ 121 (440)
.+..+++|++|+++++.+.. ++ .+..+++|++|++++|.+.+ ++. +..+++|++|++++|.+.+ ++ .+..++
T Consensus 36 ~~~~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~-~~--~~~~l~ 107 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKN-VS--AIAGLQ 107 (308)
T ss_dssp CHHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSC-CG--GGTTCT
T ss_pred cHHHcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCC-ch--hhcCCC
Confidence 45677888888888887754 34 57778888888888888874 443 7888888888888888774 33 477788
Q ss_pred cceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcC
Q 045270 122 NLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNL 201 (440)
Q Consensus 122 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 201 (440)
+|++|++++|.+.+ ++. + ..+++|++|++++|.+.+ .+. +..+++|++|++++|.+. ..+. +..+
T Consensus 108 ~L~~L~l~~n~l~~-~~~-l--------~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~-~~~~--l~~l 172 (308)
T 1h6u_A 108 SIKTLDLTSTQITD-VTP-L--------AGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVS-DLTP--LANL 172 (308)
T ss_dssp TCCEEECTTSCCCC-CGG-G--------TTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCC-CCGG--GTTC
T ss_pred CCCEEECCCCCCCC-chh-h--------cCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCC-CChh--hcCC
Confidence 88888888888763 332 3 334688888888888773 333 777888888888888776 3332 6778
Q ss_pred CCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEeccCccccc
Q 045270 202 GNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISR 263 (440)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~ 263 (440)
++|+.|++++|.++.... +..+++|+.|++++|.++.++.+..+++|+.|++++|.+++
T Consensus 173 ~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 173 SKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQISDVSPLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp TTCCEEECCSSCCCCCGG---GGGCTTCCEEECTTSCCCBCGGGTTCTTCCEEEEEEEEEEC
T ss_pred CCCCEEECCCCccCcChh---hcCCCCCCEEEccCCccCccccccCCCCCCEEEccCCeeec
Confidence 888888888888765443 56677888888888888877777788888888888887754
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.84 E-value=2.9e-20 Score=161.17 Aligned_cols=196 Identities=15% Similarity=0.185 Sum_probs=128.2
Q ss_pred CCCeEEecCCccCCCccccchhcCCCCcEEEcccCc-cccCCcccccccccCceecCCC-CcccCccchhhhcccccceE
Q 045270 48 YLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAG-FAGHIPLQISSMARLVALDFSF-NQFSGSISSIRWEHLLNLVY 125 (440)
Q Consensus 48 ~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~L~~-~~~~~~~~~~~~~~l~~L~~ 125 (440)
+|++|++++|.+... .+..|..+++|++|++++|. +....+.+|..+++|++|++++ |.++ .++...+..+++|++
T Consensus 32 ~l~~L~l~~n~l~~i-~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 32 STQTLKLIETHLRTI-PSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKF 109 (239)
T ss_dssp TCCEEEEESCCCSEE-CTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCE
T ss_pred cccEEEEeCCcceEE-CHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCE
Confidence 667777777666543 33356667777777777775 5544444666777777777776 6665 444445666777777
Q ss_pred EEecCCccCCCCCccccccccccccCccccc---EEEcCCC-ccCCccccccccccCcc-EEeccccccccccchhhHhc
Q 045270 126 AVLSDNSLNGSIPRSMFEFPIFSNASSSALD---TLDLSGN-RLRGSIPVSVFELKKLT-SLLLSSNNLHGTVQLDKILN 200 (440)
Q Consensus 126 L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~ 200 (440)
|++++|.++ .+|. +..+ ++|+ +|++++| .+....+..|..+++|+ +|++++|.+. .++...+..
T Consensus 110 L~l~~n~l~-~lp~-~~~l--------~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~ 178 (239)
T 2xwt_C 110 LGIFNTGLK-MFPD-LTKV--------YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNG 178 (239)
T ss_dssp EEEEEECCC-SCCC-CTTC--------CBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTT
T ss_pred EeCCCCCCc-cccc-cccc--------cccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCC
Confidence 777777766 3554 4333 3444 7777777 66644444566777777 7777777776 555555555
Q ss_pred CCCCcEEEcCCCc-ccccCCccccCCc-cccceeecCCCCCCCCCCCcccCcccEEeccCc
Q 045270 201 LGNLAKLDLSYNS-LAVDESSRNYSFS-PMLELLNLASCKLREIPNLKNQSQLQYLYLSEN 259 (440)
Q Consensus 201 ~~~L~~L~l~~~~-~~~~~~~~~~~~~-~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~ 259 (440)
++|+.|++++|. ++...... +..+ ++|+.|++++|.++.+|.. .+++|+.|+++++
T Consensus 179 -~~L~~L~L~~n~~l~~i~~~~-~~~l~~~L~~L~l~~N~l~~l~~~-~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 179 -TKLDAVYLNKNKYLTVIDKDA-FGGVYSGPSLLDVSQTSVTALPSK-GLEHLKELIARNT 236 (239)
T ss_dssp -CEEEEEECTTCTTCCEECTTT-TTTCSBCCSEEECTTCCCCCCCCT-TCTTCSEEECTTC
T ss_pred -CCCCEEEcCCCCCcccCCHHH-hhccccCCcEEECCCCccccCChh-HhccCceeeccCc
Confidence 677888888874 66544443 5566 7888888888888877753 5777888887765
No 85
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.84 E-value=2.9e-21 Score=178.24 Aligned_cols=256 Identities=19% Similarity=0.169 Sum_probs=159.1
Q ss_pred EeeccceeecccCCCccccccCCCCeEEecCCccCCCccc----cchhcCC-CCcEEEcccCccccCCccccccc-----
Q 045270 26 LDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIP----SKLANIS-SLTYLNLSDAGFAGHIPLQISSM----- 95 (440)
Q Consensus 26 L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l----- 95 (440)
.+++++.+++.+|. .+...++|++|++++|.+... .+ +.+..++ +|++|++++|.+.+..+..+..+
T Consensus 3 ~~ls~n~~~~~~~~--~~~~~~~L~~L~Ls~n~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~ 79 (362)
T 3goz_A 3 YKLTLHPGSNPVEE--FTSIPHGVTSLDLSLNNLYSI-STVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIP 79 (362)
T ss_dssp EECCCCTTCCHHHH--HHTSCTTCCEEECTTSCGGGS-CHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSC
T ss_pred cccccccchHHHHH--HHhCCCCceEEEccCCCCChH-HHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccC
Confidence 46777777776655 455555688888888887654 33 5666777 78888888888876666666664
Q ss_pred ccCceecCCCCcccCccchh---hhccc-ccceEEEecCCccCCCCCccccccccccccC-cccccEEEcCCCccCCccc
Q 045270 96 ARLVALDFSFNQFSGSISSI---RWEHL-LNLVYAVLSDNSLNGSIPRSMFEFPIFSNAS-SSALDTLDLSGNRLRGSIP 170 (440)
Q Consensus 96 ~~L~~L~L~~~~~~~~~~~~---~~~~l-~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~-~~~L~~L~l~~~~~~~~~~ 170 (440)
++|++|++++|.+.+..+.. .+..+ ++|++|++++|.+++..+..+.... .. +++|++|++++|.+.....
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l----~~~~~~L~~L~Ls~N~l~~~~~ 155 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF----SNLPASITSLNLRGNDLGIKSS 155 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHH----TTSCTTCCEEECTTSCGGGSCH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHH----HhCCCceeEEEccCCcCCHHHH
Confidence 78888888888877444331 13333 7888888888888755544443321 11 2578888888887764332
Q ss_pred ----ccccccc-CccEEeccccccccccchh----hHhcC-CCCcEEEcCCCcccccCCcc---ccC-CccccceeecCC
Q 045270 171 ----VSVFELK-KLTSLLLSSNNLHGTVQLD----KILNL-GNLAKLDLSYNSLAVDESSR---NYS-FSPMLELLNLAS 236 (440)
Q Consensus 171 ----~~~~~~~-~L~~L~l~~~~~~~~~~~~----~~~~~-~~L~~L~l~~~~~~~~~~~~---~~~-~~~~L~~L~l~~ 236 (440)
..+...+ +|++|++++|.+. ..... .+..+ ++|+.|++++|.++...... .+. ..++|+.|++++
T Consensus 156 ~~l~~~l~~~~~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~ 234 (362)
T 3goz_A 156 DELIQILAAIPANVNSLNLRGNNLA-SKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCL 234 (362)
T ss_dssp HHHHHHHHTSCTTCCEEECTTSCGG-GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCS
T ss_pred HHHHHHHhcCCccccEeeecCCCCc-hhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcC
Confidence 2334444 7888888888776 33322 23344 48888888888876532221 122 235788888888
Q ss_pred CCCCCCCC------CcccCcccEEeccCcccccccCcccc-----cccccceeEEEccCccccc
Q 045270 237 CKLREIPN------LKNQSQLQYLYLSENQISREIPNWIW-----RVSVVGLHCLNLSHNLLVG 289 (440)
Q Consensus 237 ~~l~~l~~------~~~~~~L~~L~l~~~~~~~~~~~~~~-----~~~~~~L~~L~l~~~~~~~ 289 (440)
|.++..+. +..+++|+.|++++|.+.+..+..+. ....++|+.+++++|.+..
T Consensus 235 N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 235 NCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp SCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred CCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 87776543 46677788888888774432222110 0123346666666665543
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=7.3e-22 Score=180.66 Aligned_cols=222 Identities=18% Similarity=0.143 Sum_probs=110.9
Q ss_pred CCeEEecCCccCCCccccchhcC--CCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEE
Q 045270 49 LRSLNLARTSFNGTQIPSKLANI--SSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYA 126 (440)
Q Consensus 49 L~~L~l~~~~~~~~~l~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L 126 (440)
++.++++++.+. +..+..+ ++++.|++.++.+.+..+ .+..+++|++|++++|.+.+......+..+++|++|
T Consensus 49 ~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~-~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 49 WQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp SSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred heeeccccccCC----HHHHHhhhhccceEEEcCCccccccch-hhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 555666555543 2334444 566666666666553333 344556666666666655433122235556666666
Q ss_pred EecCCccCCCCCccccccccccccCcccccEEEcCCC-ccCC-ccccccccccCccEEecccc-ccccccchhhHhcCC-
Q 045270 127 VLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGN-RLRG-SIPVSVFELKKLTSLLLSSN-NLHGTVQLDKILNLG- 202 (440)
Q Consensus 127 ~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~-~~~~-~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~- 202 (440)
++++|.+++..+..+.. +++|++|++++| .+.+ .++..+..+++|++|++++| .+.+......+..++
T Consensus 124 ~L~~~~l~~~~~~~l~~--------~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~ 195 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAK--------NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE 195 (336)
T ss_dssp ECTTCBCCHHHHHHHTT--------CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCT
T ss_pred eCcCcccCHHHHHHHhc--------CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhccc
Confidence 66666555444444432 245666666665 3432 13344555666666666666 554221233345556
Q ss_pred CCcEEEcCCCc--ccccCCccccCCccccceeecCCCC-CC--CCCCCcccCcccEEeccCcc-cccccCcccccccccc
Q 045270 203 NLAKLDLSYNS--LAVDESSRNYSFSPMLELLNLASCK-LR--EIPNLKNQSQLQYLYLSENQ-ISREIPNWIWRVSVVG 276 (440)
Q Consensus 203 ~L~~L~l~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~-l~--~l~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~ 276 (440)
+|+.|++++|. ++.......+..+++|+.|++++|. ++ .++.+..+++|+.|++++|. +.......+. ..++
T Consensus 196 ~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~--~~~~ 273 (336)
T 2ast_B 196 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELG--EIPT 273 (336)
T ss_dssp TCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGG--GCTT
T ss_pred CCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHh--cCCC
Confidence 66666666662 3211111223445566666666665 33 12235555666666666653 2111111221 2344
Q ss_pred eeEEEccCc
Q 045270 277 LHCLNLSHN 285 (440)
Q Consensus 277 L~~L~l~~~ 285 (440)
|+.|++++|
T Consensus 274 L~~L~l~~~ 282 (336)
T 2ast_B 274 LKTLQVFGI 282 (336)
T ss_dssp CCEEECTTS
T ss_pred CCEEeccCc
Confidence 666666655
No 87
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.84 E-value=6.2e-20 Score=165.13 Aligned_cols=195 Identities=21% Similarity=0.271 Sum_probs=113.6
Q ss_pred HhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccce
Q 045270 198 ILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGL 277 (440)
Q Consensus 198 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 277 (440)
...+++|+.|+++++.+.... .+..+++|+.|++++|.++.++.+..+++|+.|++++|.+.+. + .+. ..++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l~---~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~--~l~~L 109 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTTIE---GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV-S-AIA--GLQSI 109 (308)
T ss_dssp HHHHHTCCEEECTTSCCCCCT---TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC-G-GGT--TCTTC
T ss_pred HHHcCCcCEEEeeCCCccCch---hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc-h-hhc--CCCCC
Confidence 345567777777777765443 2556777777777777777776677777777777777776542 2 222 23346
Q ss_pred eEEEccCcccccccCCccCCceeEEEcCCccccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccc
Q 045270 278 HCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTG 357 (440)
Q Consensus 278 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 357 (440)
+.|++++|.++.+++...++ +|++|++++|.+. .++. +. .+++|++|++++|.+++
T Consensus 110 ~~L~l~~n~l~~~~~l~~l~---------------------~L~~L~l~~n~l~-~~~~-l~-~l~~L~~L~l~~n~l~~ 165 (308)
T 1h6u_A 110 KTLDLTSTQITDVTPLAGLS---------------------NLQVLYLDLNQIT-NISP-LA-GLTNLQYLSIGNAQVSD 165 (308)
T ss_dssp CEEECTTSCCCCCGGGTTCT---------------------TCCEEECCSSCCC-CCGG-GG-GCTTCCEEECCSSCCCC
T ss_pred CEEECCCCCCCCchhhcCCC---------------------CCCEEECCCCccC-cCcc-cc-CCCCccEEEccCCcCCC
Confidence 66666666665554444444 4555555555554 2222 22 25566666666666654
Q ss_pred cchhhhhccCCCCEEEcCCCcCCCCCchhhhccccEEECCCCcccCCchhhhhcCCCCcEEECCCCcccc
Q 045270 358 IIPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSD 427 (440)
Q Consensus 358 ~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 427 (440)
..+ +..+++|++|++++|.+.+++.....++|+.|++++|++.+..+ +..+++|+.|++++|++++
T Consensus 166 ~~~--l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 166 LTP--LANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CGG--GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEEC
T ss_pred Chh--hcCCCCCCEEECCCCccCcChhhcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeec
Confidence 322 55566666666666666655443334456666666666664432 5566666666666666643
No 88
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.83 E-value=4e-21 Score=173.39 Aligned_cols=231 Identities=21% Similarity=0.213 Sum_probs=177.0
Q ss_pred ccCCCCeEEecCCccCCCccccc--hhcCCCCcEEEcccCccccCCcccc--cccccCceecCCCCcccCccc---hhhh
Q 045270 45 SLHYLRSLNLARTSFNGTQIPSK--LANISSLTYLNLSDAGFAGHIPLQI--SSMARLVALDFSFNQFSGSIS---SIRW 117 (440)
Q Consensus 45 ~l~~L~~L~l~~~~~~~~~l~~~--~~~l~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~L~~~~~~~~~~---~~~~ 117 (440)
....++.+.+..+.+....+... +..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ...+
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~ 141 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQ 141 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHT
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHh
Confidence 44467888888877754322222 2245779999999999998888888 899999999999999986543 2345
Q ss_pred cccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCc--c--ccccccccCccEEecccccccccc
Q 045270 118 EHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGS--I--PVSVFELKKLTSLLLSSNNLHGTV 193 (440)
Q Consensus 118 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~--~--~~~~~~~~~L~~L~l~~~~~~~~~ 193 (440)
..+++|++|++++|.+....+..+..+ ++|++|++++|.+.+. . +..+..+++|++|++++|.++ ..
T Consensus 142 ~~~~~L~~L~Ls~n~l~~~~~~~~~~l--------~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l 212 (310)
T 4glp_A 142 WLKPGLKVLSIAQAHSPAFSCEQVRAF--------PALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TP 212 (310)
T ss_dssp TBCSCCCEEEEECCSSCCCCTTSCCCC--------TTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CH
T ss_pred hhccCCCEEEeeCCCcchhhHHHhccC--------CCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-ch
Confidence 689999999999999986666776554 7999999999987532 2 233467899999999999986 33
Q ss_pred ch---hhHhcCCCCcEEEcCCCcccccCCccc--cCCccccceeecCCCCCCCCCCCcccCcccEEeccCcccccccCcc
Q 045270 194 QL---DKILNLGNLAKLDLSYNSLAVDESSRN--YSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNW 268 (440)
Q Consensus 194 ~~---~~~~~~~~L~~L~l~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~ 268 (440)
+. ..++.+++|+.|++++|.+....+... +..+++|++|++++|.++.+|... .++|+.|++++|.+++. |.
T Consensus 213 ~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~-~~~L~~L~Ls~N~l~~~-~~- 289 (310)
T 4glp_A 213 TGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGL-PAKLRVLDLSSNRLNRA-PQ- 289 (310)
T ss_dssp HHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCC-CSCCSCEECCSCCCCSC-CC-
T ss_pred HHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhh-cCCCCEEECCCCcCCCC-ch-
Confidence 32 245788999999999999987644332 223479999999999999988722 38999999999999853 32
Q ss_pred cccccccceeEEEccCccccc
Q 045270 269 IWRVSVVGLHCLNLSHNLLVG 289 (440)
Q Consensus 269 ~~~~~~~~L~~L~l~~~~~~~ 289 (440)
+ ...++|+.|++++|.++.
T Consensus 290 ~--~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 290 P--DELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp T--TSCCCCSCEECSSTTTSC
T ss_pred h--hhCCCccEEECcCCCCCC
Confidence 2 234669999999998864
No 89
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.83 E-value=4.3e-20 Score=160.13 Aligned_cols=197 Identities=15% Similarity=0.119 Sum_probs=118.0
Q ss_pred CceEEEeeccceeecccCCCccccccCCCCeEEecCCc-cCCCccccchhcCCCCcEEEccc-CccccCCcccccccccC
Q 045270 21 GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTS-FNGTQIPSKLANISSLTYLNLSD-AGFAGHIPLQISSMARL 98 (440)
Q Consensus 21 ~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~l~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L 98 (440)
.++++|++++|.+++..+. .|..+++|++|++++|+ +... .+..|.++++|++|++++ |.+....+..|..+++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~--~~~~l~~L~~L~l~~n~~l~~i-~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L 107 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSH--AFSNLPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLL 107 (239)
T ss_dssp TTCCEEEEESCCCSEECTT--TTTTCTTCCEEEEECCSSCCEE-CTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTC
T ss_pred CcccEEEEeCCcceEECHH--HccCCCCCcEEeCCCCCCccee-CHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCC
Confidence 3567777777776654444 56667777777777665 4332 233566677777777776 66664445566667777
Q ss_pred ceecCCCCcccCccchhhhcccccce---EEEecCC-ccCCCCCccccccccccccCccccc-EEEcCCCccCCcccccc
Q 045270 99 VALDFSFNQFSGSISSIRWEHLLNLV---YAVLSDN-SLNGSIPRSMFEFPIFSNASSSALD-TLDLSGNRLRGSIPVSV 173 (440)
Q Consensus 99 ~~L~L~~~~~~~~~~~~~~~~l~~L~---~L~l~~~-~~~~~~~~~~~~l~~l~~~~~~~L~-~L~l~~~~~~~~~~~~~ 173 (440)
++|++++|.+.+ ++. +..+++|+ +|++++| .+....+..+. .+++|+ +|++++|.+. .++...
T Consensus 108 ~~L~l~~n~l~~-lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~--------~l~~L~~~L~l~~n~l~-~i~~~~ 175 (239)
T 2xwt_C 108 KFLGIFNTGLKM-FPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQ--------GLCNETLTLKLYNNGFT-SVQGYA 175 (239)
T ss_dssp CEEEEEEECCCS-CCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTT--------TTBSSEEEEECCSCCCC-EECTTT
T ss_pred CEEeCCCCCCcc-ccc--cccccccccccEEECCCCcchhhcCccccc--------chhcceeEEEcCCCCCc-ccCHhh
Confidence 777777776664 332 55555555 7777777 66532222332 235666 7777777666 444433
Q ss_pred ccccCccEEeccccc-cccccchhhHhcC-CCCcEEEcCCCcccccCCccccCCccccceeecCCC
Q 045270 174 FELKKLTSLLLSSNN-LHGTVQLDKILNL-GNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASC 237 (440)
Q Consensus 174 ~~~~~L~~L~l~~~~-~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 237 (440)
...++|++|++++|. +. .++...+..+ ++|+.|++++|.++..+.. .+++|+.|++.++
T Consensus 176 ~~~~~L~~L~L~~n~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~----~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 176 FNGTKLDAVYLNKNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVTALPSK----GLEHLKELIARNT 236 (239)
T ss_dssp TTTCEEEEEECTTCTTCC-EECTTTTTTCSBCCSEEECTTCCCCCCCCT----TCTTCSEEECTTC
T ss_pred cCCCCCCEEEcCCCCCcc-cCCHHHhhccccCCcEEECCCCccccCChh----HhccCceeeccCc
Confidence 333667777777773 55 5555556666 6777777777766544322 3556666666554
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.83 E-value=1.2e-20 Score=170.26 Aligned_cols=229 Identities=22% Similarity=0.219 Sum_probs=174.0
Q ss_pred CceEEEeeccceeecccC-CCccccccCCCCeEEecCCccCCCccccch--hcCCCCcEEEcccCccccCCc----cccc
Q 045270 21 GHVIGLDLSTESISGGIE-NAASLFSLHYLRSLNLARTSFNGTQIPSKL--ANISSLTYLNLSDAGFAGHIP----LQIS 93 (440)
Q Consensus 21 ~~l~~L~l~~~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~--~~l~~L~~L~l~~~~~~~~~~----~~~~ 93 (440)
.+++.+.+.++.++.... ....+..+++|++|++++|.+... .|..+ ..+++|++|++++|.+.+..+ ..+.
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~ 142 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGT-MPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW 142 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSC-CCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccc-hhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence 357888888887753211 111234567899999999998766 67776 889999999999999986544 3456
Q ss_pred ccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCC--CCccccccccccccCcccccEEEcCCCccCCcccc
Q 045270 94 SMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGS--IPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPV 171 (440)
Q Consensus 94 ~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~ 171 (440)
.+++|++|++++|.+. ..+...+..+++|++|++++|.+.+. ++..... ..+++|++|++++|.+. ..+.
T Consensus 143 ~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~------~~l~~L~~L~Ls~N~l~-~l~~ 214 (310)
T 4glp_A 143 LKPGLKVLSIAQAHSP-AFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP------HKFPAIQNLALRNTGME-TPTG 214 (310)
T ss_dssp BCSCCCEEEEECCSSC-CCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT------TSSCCCCSCBCCSSCCC-CHHH
T ss_pred hccCCCEEEeeCCCcc-hhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh------hcCCCCCEEECCCCCCC-chHH
Confidence 7899999999999997 44444688999999999999987532 2211110 23478999999999986 3443
Q ss_pred ----ccccccCccEEeccccccccccchhhHhcC---CCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCC
Q 045270 172 ----SVFELKKLTSLLLSSNNLHGTVQLDKILNL---GNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN 244 (440)
Q Consensus 172 ----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~ 244 (440)
.+..+++|++|++++|.+.+..+ ..+..+ ++|+.|++++|.++..+.. + .++|+.|++++|.++.+|.
T Consensus 215 ~~~~l~~~l~~L~~L~Ls~N~l~~~~p-~~~~~~~~~~~L~~L~Ls~N~l~~lp~~--~--~~~L~~L~Ls~N~l~~~~~ 289 (310)
T 4glp_A 215 VCAALAAAGVQPHSLDLSHNSLRATVN-PSAPRCMWSSALNSLNLSFAGLEQVPKG--L--PAKLRVLDLSSNRLNRAPQ 289 (310)
T ss_dssp HHHHHHHHTCCCSSEECTTSCCCCCCC-SCCSSCCCCTTCCCEECCSSCCCSCCSC--C--CSCCSCEECCSCCCCSCCC
T ss_pred HHHHHHhcCCCCCEEECCCCCCCccch-hhHHhccCcCcCCEEECCCCCCCchhhh--h--cCCCCEEECCCCcCCCCch
Confidence 24678999999999999974433 233444 7999999999999854332 2 3799999999999999888
Q ss_pred CcccCcccEEeccCccccc
Q 045270 245 LKNQSQLQYLYLSENQISR 263 (440)
Q Consensus 245 ~~~~~~L~~L~l~~~~~~~ 263 (440)
+..+++|+.|++++|.++.
T Consensus 290 ~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 290 PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp TTSCCCCSCEECSSTTTSC
T ss_pred hhhCCCccEEECcCCCCCC
Confidence 8889999999999998864
No 91
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=1.3e-19 Score=166.29 Aligned_cols=234 Identities=19% Similarity=0.171 Sum_probs=175.0
Q ss_pred cceeeeeeCCC----------CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcE-EE
Q 045270 10 CDWSGVDCDEA----------GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTY-LN 78 (440)
Q Consensus 10 ~~~~~~~~~~~----------~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~-L~ 78 (440)
|.|..|.|... .++++|+|++|.++...+. +|..+++|++|++++|.+...--+.+|.+++++++ +.
T Consensus 9 C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~--~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~ 86 (350)
T 4ay9_X 9 CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKG--AFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI 86 (350)
T ss_dssp EETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTT--SSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEE
T ss_pred eeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHH--HHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhc
Confidence 45778888532 4789999999999865444 78999999999999998865412356788888776 56
Q ss_pred cccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCC-ccCCCCCcc-ccccccccccCccccc
Q 045270 79 LSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDN-SLNGSIPRS-MFEFPIFSNASSSALD 156 (440)
Q Consensus 79 l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~-~~~l~~l~~~~~~~L~ 156 (440)
+.+|.+....|.+|..+++|++|++++|.+. .++...+....++..+++.++ .+. .++.. +..++ ..++
T Consensus 87 ~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~l~~l~l~~~~~i~-~l~~~~f~~~~-------~~l~ 157 (350)
T 4ay9_X 87 EKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIH-TIERNSFVGLS-------FESV 157 (350)
T ss_dssp EEETTCCEECTTSBCCCTTCCEEEEEEECCS-SCCCCTTCCBSSCEEEEEESCTTCC-EECTTSSTTSB-------SSCE
T ss_pred ccCCcccccCchhhhhccccccccccccccc-cCCchhhcccchhhhhhhccccccc-cccccchhhcc-------hhhh
Confidence 6678888677788899999999999999988 444445667778888888664 454 44443 33222 4688
Q ss_pred EEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCC
Q 045270 157 TLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLAS 236 (440)
Q Consensus 157 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~ 236 (440)
+|++++|.+. .++.......+|+++.+.++...+.++...|..+++|+.|++++|.++..+... +..|++|.+.+
T Consensus 158 ~L~L~~N~i~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~----~~~L~~L~~l~ 232 (350)
T 4ay9_X 158 ILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG----LENLKKLRARS 232 (350)
T ss_dssp EEECCSSCCC-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS----CTTCCEEECTT
T ss_pred hhcccccccc-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh----hccchHhhhcc
Confidence 8999999998 566666677889999998644334788778899999999999999988665433 44566665554
Q ss_pred C-CCCCCCCCcccCcccEEeccCc
Q 045270 237 C-KLREIPNLKNQSQLQYLYLSEN 259 (440)
Q Consensus 237 ~-~l~~l~~~~~~~~L~~L~l~~~ 259 (440)
+ .++.+|.+..+++|+.+++.++
T Consensus 233 ~~~l~~lP~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 233 TYNLKKLPTLEKLVALMEASLTYP 256 (350)
T ss_dssp CTTCCCCCCTTTCCSCCEEECSCH
T ss_pred CCCcCcCCCchhCcChhhCcCCCC
Confidence 4 5778888888999999998754
No 92
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.82 E-value=7.1e-21 Score=175.61 Aligned_cols=242 Identities=20% Similarity=0.178 Sum_probs=178.4
Q ss_pred CceEEEeeccceeecccCCC--ccccccC-CCCeEEecCCccCCCccccchhcC-----CCCcEEEcccCccccCCcccc
Q 045270 21 GHVIGLDLSTESISGGIENA--ASLFSLH-YLRSLNLARTSFNGTQIPSKLANI-----SSLTYLNLSDAGFAGHIPLQI 92 (440)
Q Consensus 21 ~~l~~L~l~~~~~~~~~~~~--~~~~~l~-~L~~L~l~~~~~~~~~l~~~~~~l-----~~L~~L~l~~~~~~~~~~~~~ 92 (440)
.++++|++++|.+++..+.. ..+..++ +|++|++++|.+... .+..+..+ ++|++|++++|.+.+..+..+
T Consensus 22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~-~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l 100 (362)
T 3goz_A 22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFK-NSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL 100 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGS-CHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHH-HHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence 56999999999998655410 2678888 999999999998765 55566654 999999999999987766655
Q ss_pred cc----c-ccCceecCCCCcccCccchh---hhcc-cccceEEEecCCccCCCCCccccccccccccCc-ccccEEEcCC
Q 045270 93 SS----M-ARLVALDFSFNQFSGSISSI---RWEH-LLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASS-SALDTLDLSG 162 (440)
Q Consensus 93 ~~----l-~~L~~L~L~~~~~~~~~~~~---~~~~-l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~-~~L~~L~l~~ 162 (440)
.. + ++|++|++++|.+.+..... .+.. .++|++|++++|.+++..+..+.... ... ++|++|++++
T Consensus 101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l----~~~~~~L~~L~Ls~ 176 (362)
T 3goz_A 101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL----AAIPANVNSLNLRG 176 (362)
T ss_dssp HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH----HTSCTTCCEEECTT
T ss_pred HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH----hcCCccccEeeecC
Confidence 44 4 89999999999998554332 1333 36999999999999865444432211 122 4899999999
Q ss_pred CccCCccccccc----cc-cCccEEecccccccccc---chhhHhc-CCCCcEEEcCCCcccccCC---ccccCCccccc
Q 045270 163 NRLRGSIPVSVF----EL-KKLTSLLLSSNNLHGTV---QLDKILN-LGNLAKLDLSYNSLAVDES---SRNYSFSPMLE 230 (440)
Q Consensus 163 ~~~~~~~~~~~~----~~-~~L~~L~l~~~~~~~~~---~~~~~~~-~~~L~~L~l~~~~~~~~~~---~~~~~~~~~L~ 230 (440)
|.+....+..+. .+ ++|++|++++|.+.... -...+.. .++|+.|++++|.++.... ...+..+++|+
T Consensus 177 n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~ 256 (362)
T 3goz_A 177 NNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQ 256 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCS
T ss_pred CCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCcc
Confidence 999865554443 44 59999999999987311 1123444 5699999999999876544 22356778999
Q ss_pred eeecCCCCCCCCC--------C-CcccCcccEEeccCcccccccCc
Q 045270 231 LLNLASCKLREIP--------N-LKNQSQLQYLYLSENQISREIPN 267 (440)
Q Consensus 231 ~L~l~~~~l~~l~--------~-~~~~~~L~~L~l~~~~~~~~~~~ 267 (440)
.|++++|.+..+. . +..+++|+.|++++|.+....+.
T Consensus 257 ~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~ 302 (362)
T 3goz_A 257 TVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI 302 (362)
T ss_dssp EEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred EEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence 9999999844332 2 67889999999999998765443
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.81 E-value=2.9e-19 Score=163.94 Aligned_cols=239 Identities=16% Similarity=0.139 Sum_probs=123.1
Q ss_pred EEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCC
Q 045270 125 YAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNL 204 (440)
Q Consensus 125 ~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 204 (440)
.++.++++++ .+|..+. +++++|++++|.+....+..|.++++|++|++++|.+.+.++...|.+++++
T Consensus 13 ~v~C~~~~Lt-~iP~~l~----------~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l 81 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDLP----------RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 81 (350)
T ss_dssp EEEEESTTCC-SCCTTCC----------TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTC
T ss_pred EEEecCCCCC-ccCcCcC----------CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhh
Confidence 4455555555 5555442 3566666666666632223456666666666666665444555555555555
Q ss_pred cE-EEcCCCcccccCCccccCCccccceeecCCCCCCCCCC--CcccCcccEEeccCc-ccccccCcccccccccceeEE
Q 045270 205 AK-LDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSEN-QISREIPNWIWRVSVVGLHCL 280 (440)
Q Consensus 205 ~~-L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L 280 (440)
.. +.+..|.+....+.. +..+++|+.|++++|.++.++. +.....+..+++.++ .+....+..+.
T Consensus 82 ~~~l~~~~N~l~~l~~~~-f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~---------- 150 (350)
T 4ay9_X 82 HEIRIEKANNLLYINPEA-FQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFV---------- 150 (350)
T ss_dssp CEEEEEEETTCCEECTTS-BCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSST----------
T ss_pred hhhhcccCCcccccCchh-hhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchh----------
Confidence 44 333344444443332 4455555555555555555444 223333444444332 22111111110
Q ss_pred EccCcccccccCCccCCceeEEEcCCccccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEeccc-ccccccc
Q 045270 281 NLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAAN-NGLTGII 359 (440)
Q Consensus 281 ~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~l~~~~ 359 (440)
.....++.|++++|.++ .++..++. .++|+.+++.+ |.++.+.
T Consensus 151 ----------------------------------~~~~~l~~L~L~~N~i~-~i~~~~f~-~~~L~~l~l~~~n~l~~i~ 194 (350)
T 4ay9_X 151 ----------------------------------GLSFESVILWLNKNGIQ-EIHNSAFN-GTQLDELNLSDNNNLEELP 194 (350)
T ss_dssp ----------------------------------TSBSSCEEEECCSSCCC-EECTTSST-TEEEEEEECTTCTTCCCCC
T ss_pred ----------------------------------hcchhhhhhcccccccc-CCChhhcc-ccchhHHhhccCCcccCCC
Confidence 01123555556666655 45555544 45666666653 4455444
Q ss_pred hhhhhccCCCCEEEcCCCcCCCCCchhhhccccEEECCCCcccCCchhhhhcCCCCcEEECCCC
Q 045270 360 PASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNN 423 (440)
Q Consensus 360 ~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n 423 (440)
+..|..+++|++|++++|+++.+|... ...|+.|.+.++.-...+| .+.++++|+.+++.++
T Consensus 195 ~~~f~~l~~L~~LdLs~N~l~~lp~~~-~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 195 NDVFHGASGPVILDISRTRIHSLPSYG-LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP 256 (350)
T ss_dssp TTTTTTEECCSEEECTTSCCCCCCSSS-CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred HHHhccCcccchhhcCCCCcCccChhh-hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence 455666667777777777666665432 3346666665554443444 3566677777777654
No 94
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.81 E-value=5.6e-21 Score=178.11 Aligned_cols=44 Identities=20% Similarity=0.089 Sum_probs=28.1
Q ss_pred cccchhcCCCCcEEEcccCccccCCc----ccccccccCceecCCCCc
Q 045270 64 IPSKLANISSLTYLNLSDAGFAGHIP----LQISSMARLVALDFSFNQ 107 (440)
Q Consensus 64 l~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~L~~~~ 107 (440)
++..+..+++|++|++++|.+....+ ..+..+++|++|+|++|.
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~ 71 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIF 71 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCC
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccc
Confidence 45566667777777777777664423 335566777777777653
No 95
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.80 E-value=1.1e-20 Score=176.10 Aligned_cols=169 Identities=18% Similarity=0.189 Sum_probs=100.4
Q ss_pred cccccCCCCeEEecCCccCCCc---cccchhcCCCCcEEEcccCcc---ccCCcccc-------cccccCceecCCCCcc
Q 045270 42 SLFSLHYLRSLNLARTSFNGTQ---IPSKLANISSLTYLNLSDAGF---AGHIPLQI-------SSMARLVALDFSFNQF 108 (440)
Q Consensus 42 ~~~~l~~L~~L~l~~~~~~~~~---l~~~~~~l~~L~~L~l~~~~~---~~~~~~~~-------~~l~~L~~L~L~~~~~ 108 (440)
.+..+++|++|++++|.+.... ++..+..+++|++|++++|.+ .+.+|..+ ..+++|++|+|++|.+
T Consensus 27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l 106 (386)
T 2ca6_A 27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106 (386)
T ss_dssp HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence 6778899999999999886541 334467899999999998643 44455555 6778888888888888
Q ss_pred cCcc---chhhhcccccceEEEecCCccCCCCCccccccccccccCc---------ccccEEEcCCCccC-Cccc---cc
Q 045270 109 SGSI---SSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASS---------SALDTLDLSGNRLR-GSIP---VS 172 (440)
Q Consensus 109 ~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~---------~~L~~L~l~~~~~~-~~~~---~~ 172 (440)
.+.. ....+..+++|++|++++|.+++..+..+...- ..+ ++|++|++++|.+. ...+ ..
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l----~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARAL----QELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHH----HHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHH----HHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 7531 122467778888888888877543333332210 111 45666666666554 1222 23
Q ss_pred cccccCccEEeccccccccc----cchhhHhcCCCCcEEEcCCCcc
Q 045270 173 VFELKKLTSLLLSSNNLHGT----VQLDKILNLGNLAKLDLSYNSL 214 (440)
Q Consensus 173 ~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~ 214 (440)
+..+++|++|++++|.+... .....+..+++|+.|++++|.+
T Consensus 183 l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l 228 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228 (386)
T ss_dssp HHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCC
T ss_pred HHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCC
Confidence 33455555555555554311 1111334445555555555544
No 96
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.79 E-value=2.6e-18 Score=149.96 Aligned_cols=177 Identities=23% Similarity=0.329 Sum_probs=94.8
Q ss_pred CCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEE
Q 045270 48 YLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAV 127 (440)
Q Consensus 48 ~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~ 127 (440)
..++++++++.+.. +|..+. ++++.|++++|.+.+..+..+.++++|++|++++|.+.+ ++...+..+++|++|+
T Consensus 15 ~~~~l~~~~~~l~~--~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~ 89 (251)
T 3m19_A 15 GKKEVDCQGKSLDS--VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLG 89 (251)
T ss_dssp GGTEEECTTCCCSS--CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCC-CCTTTTTTCTTCCEEE
T ss_pred CCeEEecCCCCccc--cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCc-cCHhHhccCCcCCEEE
Confidence 45566666666543 454444 566777777776665555566666667777666666663 3333455566666666
Q ss_pred ecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEE
Q 045270 128 LSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKL 207 (440)
Q Consensus 128 l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 207 (440)
+++|.++...+..+..+ ++|++|++++|.+....+..|..+++|++|++++|.+. .++...
T Consensus 90 L~~n~l~~~~~~~~~~l--------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~---------- 150 (251)
T 3m19_A 90 LANNQLASLPLGVFDHL--------TQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGA---------- 150 (251)
T ss_dssp CTTSCCCCCCTTTTTTC--------TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTT----------
T ss_pred CCCCcccccChhHhccc--------CCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCC-ccCHHH----------
Confidence 66666553322222222 45555555555554322233344444444444444443 233223
Q ss_pred EcCCCcccccCCccccCCccccceeecCCCCCCCCCC--CcccCcccEEeccCccccc
Q 045270 208 DLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISR 263 (440)
Q Consensus 208 ~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~ 263 (440)
+..+++|+.|++++|.++.++. +..+++|+.|++++|.+..
T Consensus 151 ---------------~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 151 ---------------FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp ---------------TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred ---------------cCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 3444555555555555554443 5556666666666666544
No 97
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.77 E-value=5e-18 Score=163.73 Aligned_cols=186 Identities=23% Similarity=0.325 Sum_probs=109.0
Q ss_pred CCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEE
Q 045270 202 GNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLN 281 (440)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 281 (440)
.+++.|++++|.++..+... .++|+.|++++|.++.+| ..+++|+.|++++|.+++ +|. +.. +|+.|+
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l----~~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~-ip~-l~~----~L~~L~ 126 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNL----PPQITVLEITQNALISLP--ELPASLEYLDACDNRLST-LPE-LPA----SLKHLD 126 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCC----CTTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC-CCC-CCT----TCCEEE
T ss_pred CCccEEEeCCCCCCccCHhH----cCCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC-cch-hhc----CCCEEE
Confidence 38899999999887643322 377999999999998888 567889999999988876 555 322 588888
Q ss_pred ccCcccccccCCccCCceeEEEcCCccccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchh
Q 045270 282 LSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPA 361 (440)
Q Consensus 282 l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~ 361 (440)
+++|.++.++. .+++|+.|++++|.+.+ +|. .+++|+.|++++|.+++ +|.
T Consensus 127 Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~----------------------lp~----~l~~L~~L~Ls~N~L~~-lp~ 177 (571)
T 3cvr_A 127 VDNNQLTMLPE--LPALLEYINADNNQLTM----------------------LPE----LPTSLEVLSVRNNQLTF-LPE 177 (571)
T ss_dssp CCSSCCSCCCC--CCTTCCEEECCSSCCSC----------------------CCC----CCTTCCEEECCSSCCSC-CCC
T ss_pred CCCCcCCCCCC--cCccccEEeCCCCccCc----------------------CCC----cCCCcCEEECCCCCCCC-cch
Confidence 88887776554 45555555555555443 332 13444445555444443 222
Q ss_pred hhhccCCCCEEEcCCCcCCCCCchhhhccc-------cEEECCCCcccCCchhhhhcCCCCcEEECCCCcccccCccccc
Q 045270 362 SLCNATTLSLLDLSNNSFMKKSDAFLNCLL-------QTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLY 434 (440)
Q Consensus 362 ~~~~~~~L~~L~l~~n~i~~~~~~~~~~~L-------~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~ 434 (440)
+. ++|+.|++++|.|+.+|. +..+| +.|++++|.++ .+|..+..+++|+.|++++|++++.+|..+.
T Consensus 178 -l~--~~L~~L~Ls~N~L~~lp~--~~~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 178 -LP--ESLEALDVSTNLLESLPA--VPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLS 251 (571)
T ss_dssp -CC--TTCCEEECCSSCCSSCCC--CC--------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHH
T ss_pred -hh--CCCCEEECcCCCCCchhh--HHHhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHH
Confidence 32 445555555555544444 11234 55555555555 2344444455555555555555555444443
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.75 E-value=6.2e-18 Score=143.13 Aligned_cols=152 Identities=20% Similarity=0.158 Sum_probs=70.8
Q ss_pred CCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEE
Q 045270 48 YLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAV 127 (440)
Q Consensus 48 ~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~ 127 (440)
+|++|++++|.+... .+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .++...+..+++|++|+
T Consensus 29 ~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~ 106 (208)
T 2o6s_A 29 QTTYLDLETNSLKSL-PNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELA 106 (208)
T ss_dssp TCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred CCcEEEcCCCccCcC-ChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEEE
Confidence 455555555554432 2233444555555555555554333333445555555555555554 22322344555555555
Q ss_pred ecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEE
Q 045270 128 LSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKL 207 (440)
Q Consensus 128 l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 207 (440)
+++|.+.+..+..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|.+. ..++.|+.|
T Consensus 107 L~~N~l~~~~~~~~~~l--------~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~--------~~~~~l~~L 170 (208)
T 2o6s_A 107 LNTNQLQSLPDGVFDKL--------TQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD--------CTCPGIRYL 170 (208)
T ss_dssp CCSSCCCCCCTTTTTTC--------TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC--------CCTTTTHHH
T ss_pred cCCCcCcccCHhHhccC--------CcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee--------cCCCCHHHH
Confidence 55555542222222222 45555555555554333333445555555555555443 123445555
Q ss_pred EcCCCccccc
Q 045270 208 DLSYNSLAVD 217 (440)
Q Consensus 208 ~l~~~~~~~~ 217 (440)
+++.|.+++.
T Consensus 171 ~~~~n~~~g~ 180 (208)
T 2o6s_A 171 SEWINKHSGV 180 (208)
T ss_dssp HHHHHHCTTT
T ss_pred HHHHHhCCce
Confidence 5555554433
No 99
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=2.9e-17 Score=140.96 Aligned_cols=163 Identities=21% Similarity=0.262 Sum_probs=113.3
Q ss_pred CCCCCCCCcceeeeeeCCCCceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEccc
Q 045270 2 QWRQSTDCCDWSGVDCDEAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSD 81 (440)
Q Consensus 2 ~w~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~ 81 (440)
.|..++..|.|.+|.|.. +.++ .+|. .+ .++|++|++++|.+... .+..|..+++|++|++++
T Consensus 11 ~~~~~~~~Cs~~~v~c~~-----------~~l~-~ip~--~~--~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~ 73 (229)
T 3e6j_A 11 AACPSQCSCSGTTVDCRS-----------KRHA-SVPA--GI--PTNAQILYLHDNQITKL-EPGVFDSLINLKELYLGS 73 (229)
T ss_dssp CCCCTTCEEETTEEECTT-----------SCCS-SCCS--CC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCS
T ss_pred ccCCCCCEEeCCEeEccC-----------CCcC-ccCC--CC--CCCCCEEEcCCCccCcc-CHHHhhCccCCcEEECCC
Confidence 366788899999888863 2232 2332 22 27788888888887665 567777888888888888
Q ss_pred CccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcC
Q 045270 82 AGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLS 161 (440)
Q Consensus 82 ~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~ 161 (440)
|.+....+..+..+++|++|+|++|.++ .++...+..+++|++|++++|.+. .+|..+..+ ++|++|+++
T Consensus 74 N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l--------~~L~~L~L~ 143 (229)
T 3e6j_A 74 NQLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERL--------THLTHLALD 143 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGC--------TTCSEEECC
T ss_pred CCCCCcChhhcccCCCcCEEECCCCcCC-ccChhHhCcchhhCeEeccCCccc-ccCcccccC--------CCCCEEECC
Confidence 8887544455677888888888888877 444445677777788888777777 666666544 577777777
Q ss_pred CCccCCccccccccccCccEEecccccccc
Q 045270 162 GNRLRGSIPVSVFELKKLTSLLLSSNNLHG 191 (440)
Q Consensus 162 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 191 (440)
+|.+....+..+..+++|+.|++.+|.+..
T Consensus 144 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 144 QNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 777774444556667777777777776653
No 100
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.74 E-value=3.4e-17 Score=145.90 Aligned_cols=172 Identities=19% Similarity=0.267 Sum_probs=96.0
Q ss_pred hcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCcccccccccc
Q 045270 69 ANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFS 148 (440)
Q Consensus 69 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~ 148 (440)
..+++|++|+++++.+. .++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|.+. .++. +
T Consensus 43 ~~l~~L~~L~l~~~~i~-~~~-~~~~l~~L~~L~L~~n~l~~~-~~--l~~l~~L~~L~l~~n~l~-~~~~-l------- 108 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDI-KP--LANLKNLGWLFLDENKVK-DLSS-L------- 108 (291)
T ss_dssp HHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG--GTTCTTCCEEECCSSCCC-CGGG-G-------
T ss_pred hhcCcccEEEccCCCcc-cCh-hHhcCCCCCEEEccCCccCCC-cc--cccCCCCCEEECCCCcCC-CChh-h-------
Confidence 34455555555555444 222 244455555555555554422 21 445555555555555544 2221 2
Q ss_pred ccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccc
Q 045270 149 NASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPM 228 (440)
Q Consensus 149 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 228 (440)
..+++|++|++++|.+.. + ..+..+++|++|++++|.+.+ . ..+..+++|+.|++++|.+....+ +..+++
T Consensus 109 -~~l~~L~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~-~--~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~ 179 (291)
T 1h6t_A 109 -KDLKKLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITD-I--TVLSRLTKLDTLSLEDNQISDIVP---LAGLTK 179 (291)
T ss_dssp -TTCTTCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC-C--GGGGGCTTCSEEECCSSCCCCCGG---GTTCTT
T ss_pred -ccCCCCCEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCc-c--hhhccCCCCCEEEccCCccccchh---hcCCCc
Confidence 222455666666655552 2 245556666666666666552 2 245666677777777776654433 556677
Q ss_pred cceeecCCCCCCCCCCCcccCcccEEeccCccccc
Q 045270 229 LELLNLASCKLREIPNLKNQSQLQYLYLSENQISR 263 (440)
Q Consensus 229 L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~ 263 (440)
|+.|++++|.++.++.+..+++|+.|++++|.+..
T Consensus 180 L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 180 LQNLYLSKNHISDLRALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCEEECCSSCCCBCGGGTTCTTCSEEEEEEEEEEC
T ss_pred cCEEECCCCcCCCChhhccCCCCCEEECcCCcccC
Confidence 77777777777777667777777778877777654
No 101
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.73 E-value=5.6e-17 Score=156.44 Aligned_cols=138 Identities=25% Similarity=0.340 Sum_probs=101.2
Q ss_pred CccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEecc
Q 045270 178 KLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLS 257 (440)
Q Consensus 178 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~ 257 (440)
+++.|++++|.+. .++... .++|+.|++++|.++..+ ..+++|+.|++++|.++.+|.+.. +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~-~lp~~l---~~~L~~L~Ls~N~l~~ip-----~~l~~L~~L~Ls~N~l~~ip~l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLS-SLPDNL---PPQITVLEITQNALISLP-----ELPASLEYLDACDNRLSTLPELPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCS-CCCSCC---CTTCSEEECCSSCCSCCC-----CCCTTCCEEECCSSCCSCCCCCCT--TCCEEECC
T ss_pred CccEEEeCCCCCC-ccCHhH---cCCCCEEECcCCCCcccc-----cccCCCCEEEccCCCCCCcchhhc--CCCEEECC
Confidence 8999999999987 455432 378999999999998544 347899999999999999887433 99999999
Q ss_pred CcccccccCcccccccccceeEEEccCcccccccCCccCCceeEEEcCCccccCcccCCCCCccEEEccCCcccccCCc
Q 045270 258 ENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPA 336 (440)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~ 336 (440)
+|.+++ +|. ..++|+.|++++|.++.++. .+++|++|++++|.+.+... ..++|+.|+|++|.++ .+|.
T Consensus 129 ~N~l~~-lp~-----~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~L~~lp~-l~~~L~~L~Ls~N~L~-~lp~ 197 (571)
T 3cvr_A 129 NNQLTM-LPE-----LPALLEYINADNNQLTMLPE--LPTSLEVLSVRNNQLTFLPE-LPESLEALDVSTNLLE-SLPA 197 (571)
T ss_dssp SSCCSC-CCC-----CCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCS-SCCC
T ss_pred CCcCCC-CCC-----cCccccEEeCCCCccCcCCC--cCCCcCEEECCCCCCCCcch-hhCCCCEEECcCCCCC-chhh
Confidence 999986 554 34569999999999988665 45566666666665554222 3345555555555554 4443
No 102
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.72 E-value=7.1e-17 Score=143.81 Aligned_cols=170 Identities=21% Similarity=0.254 Sum_probs=79.2
Q ss_pred cCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeE
Q 045270 200 NLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHC 279 (440)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 279 (440)
.+++|+.|++++|.+..... +..+++|+.|++++|.++.++.+..+++|+.|++++|.+.
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~---~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~----------------- 103 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQG---IQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVK----------------- 103 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTT---GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC-----------------
T ss_pred hcCcccEEEccCCCcccChh---HhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCC-----------------
Confidence 44455555555555443321 3344555555555555554444445555555555555443
Q ss_pred EEccCcccccccCCccCCceeEEEcCCccccCcc-cCCCCCccEEEccCCcccccCCccccccCCCcceEeccccccccc
Q 045270 280 LNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNI-HQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGI 358 (440)
Q Consensus 280 L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~ 358 (440)
.++....+++|++|++++|++.+.. ...+++|+.|++++|.+. .+ ..+. .+++|+.|++++|.+++.
T Consensus 104 ---------~~~~l~~l~~L~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~-~~-~~l~-~l~~L~~L~L~~N~l~~~ 171 (291)
T 1h6t_A 104 ---------DLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKIT-DI-TVLS-RLTKLDTLSLEDNQISDI 171 (291)
T ss_dssp ---------CGGGGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCC-CC-GGGG-GCTTCSEEECCSSCCCCC
T ss_pred ---------CChhhccCCCCCEEECCCCcCCCChhhcCCCCCCEEEccCCcCC-cc-hhhc-cCCCCCEEEccCCccccc
Confidence 3322223344444444444333211 111234445555555444 22 1222 255556666665555543
Q ss_pred chhhhhccCCCCEEEcCCCcCCCCCchhhhccccEEECCCCcccC
Q 045270 359 IPASLCNATTLSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQG 403 (440)
Q Consensus 359 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~~L~~L~l~~n~~~~ 403 (440)
.+ +..+++|++|++++|.+++++.....++|+.|++++|++..
T Consensus 172 ~~--l~~l~~L~~L~L~~N~i~~l~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 172 VP--LAGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp GG--GTTCTTCCEEECCSSCCCBCGGGTTCTTCSEEEEEEEEEEC
T ss_pred hh--hcCCCccCEEECCCCcCCCChhhccCCCCCEEECcCCcccC
Confidence 33 55555555555555555555433233445555555555553
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=7.5e-17 Score=135.08 Aligned_cols=149 Identities=12% Similarity=0.091 Sum_probs=111.3
Q ss_pred ceeEEEccCcccccccCCccCCceeEEEcCCccccCc-ccCCCCCccEEEccCCcccccCCccccccCCCcceEeccccc
Q 045270 276 GLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGN-IHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNG 354 (440)
Q Consensus 276 ~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 354 (440)
+++.|++++|.+..++....+++|++|++++|.+... ....+++|++|++++|.+.+..+..+.. +++|++|++++|.
T Consensus 45 ~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~Ls~n~ 123 (197)
T 4ezg_A 45 SLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSG-LTSLTLLDISHSA 123 (197)
T ss_dssp TCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGGSCCCTT-CTTCCEEECCSSB
T ss_pred CccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCcccChhhcC-CCCCCEEEecCCc
Confidence 3555555555555444444566666666666654432 2233578888889888887656666555 9999999999999
Q ss_pred ccccchhhhhccCCCCEEEcCCCc-CCCCCchhhhccccEEECCCCcccCCchhhhhcCCCCcEEECCCCcccc
Q 045270 355 LTGIIPASLCNATTLSLLDLSNNS-FMKKSDAFLNCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSD 427 (440)
Q Consensus 355 l~~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 427 (440)
+++..+..+..+++|++|++++|. +.+++.....++|+.|++++|++.+.. .+..+++|+.|++++|++.+
T Consensus 124 i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 124 HDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC----
T ss_pred cCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccCC
Confidence 998788899999999999999998 888875445677999999999999643 68899999999999999864
No 104
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.71 E-value=4.2e-17 Score=159.05 Aligned_cols=176 Identities=20% Similarity=0.261 Sum_probs=113.1
Q ss_pred cccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccc
Q 045270 42 SLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLL 121 (440)
Q Consensus 42 ~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~ 121 (440)
.+..+++|+.|++++|.+.. ++ .+..+++|++|+|++|.+.+..+ +..+++|++|+|++|.+.+ ++ .+..++
T Consensus 38 ~~~~L~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~--~l~~l~ 109 (605)
T 1m9s_A 38 TQNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS--SLKDLK 109 (605)
T ss_dssp CHHHHTTCCCCBCTTCCCCC--CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT--TSTTCT
T ss_pred chhcCCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch--hhccCC
Confidence 45667777777777777643 33 46777777777777777764333 7777777777777777763 33 366777
Q ss_pred cceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcC
Q 045270 122 NLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNL 201 (440)
Q Consensus 122 ~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 201 (440)
+|+.|++++|.+.+ ++ .+. .+++|+.|++++|.+.. + ..+..+++|+.|++++|.+.+ ..+ +..+
T Consensus 110 ~L~~L~Ls~N~l~~-l~-~l~--------~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~-~~~--l~~l 174 (605)
T 1m9s_A 110 KLKSLSLEHNGISD-IN-GLV--------HLPQLESLYLGNNKITD-I-TVLSRLTKLDTLSLEDNQISD-IVP--LAGL 174 (605)
T ss_dssp TCCEEECTTSCCCC-CG-GGG--------GCTTCSEEECCSSCCCC-C-GGGGSCTTCSEEECCSSCCCC-CGG--GTTC
T ss_pred CCCEEEecCCCCCC-Cc-ccc--------CCCccCEEECCCCccCC-c-hhhcccCCCCEEECcCCcCCC-chh--hccC
Confidence 77777777777763 22 232 33567777777777663 2 456667777777777776653 222 5666
Q ss_pred CCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCC
Q 045270 202 GNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIP 243 (440)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~ 243 (440)
++|+.|++++|.+.... .+..+++|+.|++++|.+...|
T Consensus 175 ~~L~~L~Ls~N~i~~l~---~l~~l~~L~~L~L~~N~l~~~p 213 (605)
T 1m9s_A 175 TKLQNLYLSKNHISDLR---ALAGLKNLDVLELFSQECLNKP 213 (605)
T ss_dssp TTCCEEECCSSCCCBCG---GGTTCTTCSEEECCSEEEECCC
T ss_pred CCCCEEECcCCCCCCCh---HHccCCCCCEEEccCCcCcCCc
Confidence 77777777777665432 2556666777777776665443
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.71 E-value=9.3e-17 Score=135.86 Aligned_cols=167 Identities=22% Similarity=0.224 Sum_probs=128.5
Q ss_pred CcceeeeeeCCC----------CceEEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEE
Q 045270 9 CCDWSGVDCDEA----------GHVIGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLN 78 (440)
Q Consensus 9 ~~~~~~~~~~~~----------~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~ 78 (440)
.|.|.++.|... .++++|++++|.+++..+. .+..+++|++|++++|.+... .+..+..+++|++|+
T Consensus 6 ~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~ 82 (208)
T 2o6s_A 6 SCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNG--VFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLN 82 (208)
T ss_dssp EEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTT--TTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEE
T ss_pred EECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChh--hhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEE
Confidence 367888888542 3689999999988865544 678899999999999888654 445578889999999
Q ss_pred cccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEE
Q 045270 79 LSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTL 158 (440)
Q Consensus 79 l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L 158 (440)
+++|.+.+..+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+++..+..+.. +++|++|
T Consensus 83 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~--------l~~L~~L 153 (208)
T 2o6s_A 83 LSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDR--------LTSLQYI 153 (208)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTT--------CTTCCEE
T ss_pred CCCCcCCccCHhHhcCccCCCEEEcCCCcCc-ccCHhHhccCCcCCEEECCCCccceeCHHHhcc--------CCCccEE
Confidence 9999888665666788999999999999888 444446788899999999999888444433433 3688999
Q ss_pred EcCCCccCCccccccccccCccEEeccccccccccc
Q 045270 159 DLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQ 194 (440)
Q Consensus 159 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 194 (440)
++++|.+.+ .+++|++|.+..+.+.+.++
T Consensus 154 ~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip 182 (208)
T 2o6s_A 154 WLHDNPWDC-------TCPGIRYLSEWINKHSGVVR 182 (208)
T ss_dssp ECCSCCBCC-------CTTTTHHHHHHHHHCTTTBB
T ss_pred EecCCCeec-------CCCCHHHHHHHHHhCCceee
Confidence 999887652 45678888888888876666
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.70 E-value=1.5e-16 Score=155.29 Aligned_cols=106 Identities=23% Similarity=0.368 Sum_probs=61.6
Q ss_pred HhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccce
Q 045270 198 ILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGL 277 (440)
Q Consensus 198 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 277 (440)
+..+++|+.|+++++.+.... .+..+++|+.|++++|.++.++.+..+++|+.|++++|.+.+ .+ .+ ...++|
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l~---~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~-l~-~l--~~l~~L 111 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSVQ---GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKD-LS-SL--KDLKKL 111 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCCT---TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC-CT-TS--TTCTTC
T ss_pred hhcCCCCCEEECcCCCCCCCh---HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCC-Ch-hh--ccCCCC
Confidence 345566777777777665443 255667777777777777666666667777777777776653 22 22 223346
Q ss_pred eEEEccCcccccccCCccCCceeEEEcCCcccc
Q 045270 278 HCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLR 310 (440)
Q Consensus 278 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 310 (440)
+.|++++|.+..++....+++|+.|++++|.+.
T Consensus 112 ~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~ 144 (605)
T 1m9s_A 112 KSLSLEHNGISDINGLVHLPQLESLYLGNNKIT 144 (605)
T ss_dssp CEEECTTSCCCCCGGGGGCTTCSEEECCSSCCC
T ss_pred CEEEecCCCCCCCccccCCCccCEEECCCCccC
Confidence 666666665555544444455555555544443
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.69 E-value=3.4e-16 Score=133.34 Aligned_cols=157 Identities=17% Similarity=0.218 Sum_probs=119.9
Q ss_pred EEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecC
Q 045270 24 IGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDF 103 (440)
Q Consensus 24 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 103 (440)
++++++++.++. +|. .+ .+.+++|++++|.+.....+..|..+++|++|++++|.+.+..+.+|..+++|++|+|
T Consensus 14 ~~l~~s~n~l~~-iP~--~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 88 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPE--HI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88 (220)
T ss_dssp TEEECCSSCCSS-CCS--CC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEeEeCCCCccc-Ccc--CC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEEC
Confidence 367888887764 443 33 3456889999988865422345788999999999999988666668889999999999
Q ss_pred CCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEe
Q 045270 104 SFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLL 183 (440)
Q Consensus 104 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 183 (440)
++|.+. .++...+..+++|++|++++|.+.+..|..+..+ ++|++|++++|.+.+..|..|..+++|++|+
T Consensus 89 s~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l--------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 159 (220)
T 2v70_A 89 TSNRLE-NVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGL--------SSVRLLSLYDNQITTVAPGAFDTLHSLSTLN 159 (220)
T ss_dssp CSSCCC-CCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTC--------TTCSEEECTTSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCccC-ccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCC--------ccCCEEECCCCcCCEECHHHhcCCCCCCEEE
Confidence 999887 4444468888889999999888886666666544 6888888888888866677788888888888
Q ss_pred ccccccccccc
Q 045270 184 LSSNNLHGTVQ 194 (440)
Q Consensus 184 l~~~~~~~~~~ 194 (440)
+++|.+.....
T Consensus 160 L~~N~l~c~c~ 170 (220)
T 2v70_A 160 LLANPFNCNCY 170 (220)
T ss_dssp CCSCCEECSGG
T ss_pred ecCcCCcCCCc
Confidence 88887764444
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.69 E-value=3.2e-16 Score=133.51 Aligned_cols=151 Identities=17% Similarity=0.249 Sum_probs=105.3
Q ss_pred EEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCC
Q 045270 25 GLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFS 104 (440)
Q Consensus 25 ~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~ 104 (440)
.++++++.++. +|. .+. +.|+.|++++|.+... .+..|..+++|++|++++|.+.+..|.+|..+++|++|+|+
T Consensus 15 ~v~c~~~~l~~-iP~--~l~--~~l~~L~l~~n~i~~i-~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls 88 (220)
T 2v9t_B 15 IVDCRGKGLTE-IPT--NLP--ETITEIRLEQNTIKVI-PPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY 88 (220)
T ss_dssp EEECTTSCCSS-CCS--SCC--TTCCEEECCSSCCCEE-CTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred EEEcCCCCcCc-CCC--ccC--cCCCEEECCCCcCCCc-CHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence 45556665553 333 232 6788888888887654 44567778888888888888876667778888888888888
Q ss_pred CCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEec
Q 045270 105 FNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLL 184 (440)
Q Consensus 105 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 184 (440)
+|.++ .++...+..+++|++|++++|.+....|..+..+ ++|++|++++|.+....+..|..+++|++|++
T Consensus 89 ~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l--------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 159 (220)
T 2v9t_B 89 GNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDL--------HNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHL 159 (220)
T ss_dssp SSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC--------TTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred CCcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCC--------CCCCEEECCCCcCCEECHHHHhCCCCCCEEEe
Confidence 88877 5555566777788888888877775555555444 57777777777777544455666777777777
Q ss_pred cccccc
Q 045270 185 SSNNLH 190 (440)
Q Consensus 185 ~~~~~~ 190 (440)
++|.+.
T Consensus 160 ~~N~~~ 165 (220)
T 2v9t_B 160 AQNPFI 165 (220)
T ss_dssp CSSCEE
T ss_pred CCCCcC
Confidence 777664
No 109
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.68 E-value=2.6e-16 Score=131.75 Aligned_cols=107 Identities=21% Similarity=0.248 Sum_probs=51.8
Q ss_pred hcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCcccccccccc
Q 045270 69 ANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFS 148 (440)
Q Consensus 69 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~ 148 (440)
..+++|++|+++++.+. .+| .+..+++|++|++++|.+. .++ .+..+++|++|++++|.+++..+..+..+
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~--~l~~l~~L~~L~l~~n~l~~~~~~~l~~l---- 111 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN--PISGLSNLERLRIMGKDVTSDKIPNLSGL---- 111 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG--GGTTCTTCCEEEEECTTCBGGGSCCCTTC----
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch--hhhcCCCCCEEEeECCccCcccChhhcCC----
Confidence 44555666666555555 334 4555555555555555443 222 24445555555555555543334443322
Q ss_pred ccCcccccEEEcCCCccCCccccccccccCccEEeccccc
Q 045270 149 NASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNN 188 (440)
Q Consensus 149 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 188 (440)
++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 112 ----~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 112 ----TSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG 147 (197)
T ss_dssp ----TTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred ----CCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence 345555555554443334444444444444444443
No 110
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.68 E-value=4e-16 Score=132.90 Aligned_cols=150 Identities=18% Similarity=0.135 Sum_probs=125.9
Q ss_pred eeEEEccCcccccccCCccCCceeEEEcCCccccCcc----cCCCCCccEEEccCCcccccCCccccccCCCcceEeccc
Q 045270 277 LHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNI----HQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAAN 352 (440)
Q Consensus 277 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~ 352 (440)
-+.++++++.++.++.. ..+.+++|++++|++.+.. ...+++|+.|++++|.++ .++...+..+++|++|++++
T Consensus 13 ~~~l~~s~n~l~~iP~~-~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 13 GTTVDCSNQKLNKIPEH-IPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TTEEECCSSCCSSCCSC-CCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred CCEeEeCCCCcccCccC-CCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEECCC
Confidence 45799999999887653 3567799999999988653 234789999999999998 45544444499999999999
Q ss_pred ccccccchhhhhccCCCCEEEcCCCcCCCCCchhh--hccccEEECCCCcccCCchhhhhcCCCCcEEECCCCccccc
Q 045270 353 NGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFL--NCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDK 428 (440)
Q Consensus 353 ~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 428 (440)
|.+++..+..|..+++|++|++++|.+..++...+ ..+|+.|++++|.+++..|..|..+++|+.|++++|++...
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 99998888889999999999999999998844333 46699999999999988899999999999999999998754
No 111
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.67 E-value=5.1e-16 Score=132.22 Aligned_cols=149 Identities=18% Similarity=0.154 Sum_probs=123.1
Q ss_pred eeEEEccCcccccccCCccCCceeEEEcCCccccCccc---CCCCCccEEEccCCcccccCCccccccCCCcceEecccc
Q 045270 277 LHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIH---QLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANN 353 (440)
Q Consensus 277 L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 353 (440)
-+.++.+++.++.++... .++++.|++++|++..... ..+++|+.|+|++|.+.+..+..+.. +++|++|++++|
T Consensus 13 ~~~v~c~~~~l~~iP~~l-~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~-l~~L~~L~Ls~N 90 (220)
T 2v9t_B 13 NNIVDCRGKGLTEIPTNL-PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG-LRSLNSLVLYGN 90 (220)
T ss_dssp TTEEECTTSCCSSCCSSC-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT-CSSCCEEECCSS
T ss_pred CCEEEcCCCCcCcCCCcc-CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC-CcCCCEEECCCC
Confidence 356888888888876543 3789999999998876543 33678999999999998544555544 899999999999
Q ss_pred cccccchhhhhccCCCCEEEcCCCcCCCCCchhh--hccccEEECCCCcccCCchhhhhcCCCCcEEECCCCcccc
Q 045270 354 GLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFL--NCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSD 427 (440)
Q Consensus 354 ~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 427 (440)
.++...+..|..+++|++|++++|++..++...+ ..+|+.|++++|.+++..+..|..+++|+.|++++|++..
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence 9997777778999999999999999999854433 4679999999999998888889999999999999999863
No 112
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.67 E-value=1.2e-15 Score=130.84 Aligned_cols=153 Identities=20% Similarity=0.221 Sum_probs=120.4
Q ss_pred CCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEE
Q 045270 48 YLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAV 127 (440)
Q Consensus 48 ~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~ 127 (440)
.-+.++++++.+.. +|..+. ++|++|++++|.+.+..|..+..+++|++|+|++|.+. .++...+..+++|+.|+
T Consensus 20 s~~~v~c~~~~l~~--ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~ 94 (229)
T 3e6j_A 20 SGTTVDCRSKRHAS--VPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLD 94 (229)
T ss_dssp ETTEEECTTSCCSS--CCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred eCCEeEccCCCcCc--cCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEE
Confidence 46678888777743 566554 88999999999998777888999999999999999986 55555678899999999
Q ss_pred ecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEE
Q 045270 128 LSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKL 207 (440)
Q Consensus 128 l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 207 (440)
+++|.++...+..+..+ ++|++|++++|.+. .+|..+..+++|++|++++|.+. .++...+..+++|+.|
T Consensus 95 Ls~N~l~~l~~~~~~~l--------~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L 164 (229)
T 3e6j_A 95 LGTNQLTVLPSAVFDRL--------VHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHA 164 (229)
T ss_dssp CCSSCCCCCCTTTTTTC--------TTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred CCCCcCCccChhHhCcc--------hhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCC-ccCHHHHhCCCCCCEE
Confidence 99998884444334333 68899999998887 67778888888888888888887 5555667777888888
Q ss_pred EcCCCccc
Q 045270 208 DLSYNSLA 215 (440)
Q Consensus 208 ~l~~~~~~ 215 (440)
++.+|.+.
T Consensus 165 ~l~~N~~~ 172 (229)
T 3e6j_A 165 YLFGNPWD 172 (229)
T ss_dssp ECTTSCBC
T ss_pred EeeCCCcc
Confidence 88887765
No 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.67 E-value=4.2e-16 Score=143.45 Aligned_cols=175 Identities=24% Similarity=0.260 Sum_probs=126.2
Q ss_pred EEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchh-cCCCCcEEEcccCccccCCcccccccccCceec
Q 045270 24 IGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLA-NISSLTYLNLSDAGFAGHIPLQISSMARLVALD 102 (440)
Q Consensus 24 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 102 (440)
+.++++++.++. +|. .+ .+.++.|++++|.+... .+..+. .+++|++|++++|.+.+..+..|..+++|++|+
T Consensus 21 ~~l~c~~~~l~~-iP~--~~--~~~l~~L~Ls~N~l~~l-~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~ 94 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQ--SL--PSYTALLDLSHNNLSRL-RAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLD 94 (361)
T ss_dssp TEEECCSSCCSS-CCS--SC--CTTCSEEECCSSCCCEE-CTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CEEEeCCCCcCc-cCc--cC--CCCCCEEECCCCCCCcc-ChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEE
Confidence 467777777764 443 22 24578888888888654 445565 788888888888888866667788888888888
Q ss_pred CCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccc-c---ccccC
Q 045270 103 FSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVS-V---FELKK 178 (440)
Q Consensus 103 L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~-~---~~~~~ 178 (440)
|++|.+. .++...+..+++|+.|++++|.+....+..+..+ ++|++|++++|.+.. +|.. | ..+++
T Consensus 95 Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l--------~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~ 164 (361)
T 2xot_A 95 LSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDM--------AQLQKLYLSQNQISR-FPVELIKDGNKLPK 164 (361)
T ss_dssp CCSSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTC--------TTCCEEECCSSCCCS-CCGGGTC----CTT
T ss_pred CCCCcCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCc--------ccCCEEECCCCcCCe-eCHHHhcCcccCCc
Confidence 8888887 4555567888888888888888875556666444 688888888888874 4433 3 45788
Q ss_pred ccEEeccccccccccchhhHhcCCC--CcEEEcCCCccc
Q 045270 179 LTSLLLSSNNLHGTVQLDKILNLGN--LAKLDLSYNSLA 215 (440)
Q Consensus 179 L~~L~l~~~~~~~~~~~~~~~~~~~--L~~L~l~~~~~~ 215 (440)
|+.|++++|.+. .++...+..++. ++.|++.+|.+.
T Consensus 165 L~~L~L~~N~l~-~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 165 LMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCEEECCSSCCC-CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred CCEEECCCCCCC-ccCHHHhhhccHhhcceEEecCCCcc
Confidence 888888888887 666666777766 377888887764
No 114
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.65 E-value=6.5e-16 Score=142.19 Aligned_cols=154 Identities=26% Similarity=0.254 Sum_probs=97.4
Q ss_pred CCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCccccc-ccccCceecCCCCcccCccchhhhcccccceEEE
Q 045270 49 LRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQIS-SMARLVALDFSFNQFSGSISSIRWEHLLNLVYAV 127 (440)
Q Consensus 49 L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~ 127 (440)
-+.++++++.+.. +|..+. +.++.|+|++|.+.+..+..+. .+++|++|+|++|.+. .++...+..+++|++|+
T Consensus 20 ~~~l~c~~~~l~~--iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~ 94 (361)
T 2xot_A 20 SNILSCSKQQLPN--VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLD 94 (361)
T ss_dssp TTEEECCSSCCSS--CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEE
T ss_pred CCEEEeCCCCcCc--cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEE
Confidence 3577777777643 565554 4578888888888755555565 7788888888888777 44444577777777777
Q ss_pred ecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhH---hcCCCC
Q 045270 128 LSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKI---LNLGNL 204 (440)
Q Consensus 128 l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~L 204 (440)
+++|.+....+..+.. +++|++|++++|.+....+..|..+++|+.|++++|.+. .++...+ ..+++|
T Consensus 95 Ls~N~l~~~~~~~~~~--------l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~~l~~L 165 (361)
T 2xot_A 95 LSSNHLHTLDEFLFSD--------LQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKL 165 (361)
T ss_dssp CCSSCCCEECTTTTTT--------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCGGGTC----CTTC
T ss_pred CCCCcCCcCCHHHhCC--------CcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCC-eeCHHHhcCcccCCcC
Confidence 7777776333333333 356777777777776545556666677777777776665 3443333 345555
Q ss_pred cEEEcCCCcccc
Q 045270 205 AKLDLSYNSLAV 216 (440)
Q Consensus 205 ~~L~l~~~~~~~ 216 (440)
+.|++++|.++.
T Consensus 166 ~~L~L~~N~l~~ 177 (361)
T 2xot_A 166 MLLDLSSNKLKK 177 (361)
T ss_dssp CEEECCSSCCCC
T ss_pred CEEECCCCCCCc
Confidence 555555555543
No 115
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.64 E-value=5e-16 Score=136.08 Aligned_cols=147 Identities=25% Similarity=0.305 Sum_probs=77.8
Q ss_pred ccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccce
Q 045270 45 SLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLV 124 (440)
Q Consensus 45 ~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~ 124 (440)
.+.++..++++.+.+.. ++ .+..+++|++|++++|.+. .++ .+..+++|++|++++|.+.+. +. +..+++|+
T Consensus 17 ~l~~l~~l~l~~~~i~~--~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~-~~--l~~l~~L~ 88 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTD--LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDL-SP--LKDLTKLE 88 (263)
T ss_dssp HHHHHHHHHHTCSCTTS--EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG--GTTCSSCC
T ss_pred HHHHHHHHHhcCCCccc--cc-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCC-hh--hccCCCCC
Confidence 44455556666665543 22 4566667777777766665 344 566666666666666666532 22 55666666
Q ss_pred EEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCC
Q 045270 125 YAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNL 204 (440)
Q Consensus 125 ~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 204 (440)
+|++++|.+. .+|... . ++|++|++++|.+.+ .+ .+..+++|++|++++|.+. .++ .+..+++|
T Consensus 89 ~L~L~~N~l~-~l~~~~---------~-~~L~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~-~~~--~l~~l~~L 152 (263)
T 1xeu_A 89 ELSVNRNRLK-NLNGIP---------S-ACLSRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLK-SIV--MLGFLSKL 152 (263)
T ss_dssp EEECCSSCCS-CCTTCC---------C-SSCCEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCC-BCG--GGGGCTTC
T ss_pred EEECCCCccC-CcCccc---------c-CcccEEEccCCccCC-Ch-hhcCcccccEEECCCCcCC-CCh--HHccCCCC
Confidence 6666666665 232211 1 355666666665552 22 3445555555555555544 221 23444444
Q ss_pred cEEEcCCCccc
Q 045270 205 AKLDLSYNSLA 215 (440)
Q Consensus 205 ~~L~l~~~~~~ 215 (440)
+.|++++|.+.
T Consensus 153 ~~L~L~~N~i~ 163 (263)
T 1xeu_A 153 EVLDLHGNEIT 163 (263)
T ss_dssp CEEECTTSCCC
T ss_pred CEEECCCCcCc
Confidence 44444444443
No 116
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.64 E-value=5.4e-16 Score=135.91 Aligned_cols=171 Identities=18% Similarity=0.157 Sum_probs=108.2
Q ss_pred CccccceeecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccceeEEEccCcccccccCCccCCceeEEEc
Q 045270 225 FSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDL 304 (440)
Q Consensus 225 ~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l 304 (440)
.+..+..+++.++.++.++.+..+++|+.|++++|.+.. ++ .+. ..++|+.|++++|.++.+++...+++|++|++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~-l~-~l~--~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L 92 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQS-LA-GMQ--FFTNLKELHLSHNQISDLSPLKDLTKLEELSV 92 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCC-CT-TGG--GCTTCCEEECCSSCCCCCGGGTTCSSCCEEEC
T ss_pred HHHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCccc-ch-HHh--hCCCCCEEECCCCccCCChhhccCCCCCEEEC
Confidence 355677888888888888878888999999999988863 33 332 34558888888888877776666777777777
Q ss_pred CCccccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCc
Q 045270 305 SSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSD 384 (440)
Q Consensus 305 ~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~ 384 (440)
++|++.+......++|++|++++|.+. .++ .+. .+++|+.|++++|.+++. + .+..+++|++|++++|.+.+...
T Consensus 93 ~~N~l~~l~~~~~~~L~~L~L~~N~l~-~~~-~l~-~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~~~ 167 (263)
T 1xeu_A 93 NRNRLKNLNGIPSACLSRLFLDNNELR-DTD-SLI-HLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNTGG 167 (263)
T ss_dssp CSSCCSCCTTCCCSSCCEEECCSSCCS-BSG-GGT-TCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBCTT
T ss_pred CCCccCCcCccccCcccEEEccCCccC-CCh-hhc-CcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcchHH
Confidence 777665432222256666666666665 232 222 256666666666666543 2 45556666666666666655522
Q ss_pred hhhhccccEEECCCCcccCC
Q 045270 385 AFLNCLLQTLDLNGNRLQGT 404 (440)
Q Consensus 385 ~~~~~~L~~L~l~~n~~~~~ 404 (440)
.....+|+.|++++|++...
T Consensus 168 l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 168 LTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp STTCCCCCEEEEEEEEEECC
T ss_pred hccCCCCCEEeCCCCcccCC
Confidence 22234466666666655543
No 117
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.63 E-value=1.7e-17 Score=160.93 Aligned_cols=121 Identities=22% Similarity=0.183 Sum_probs=75.8
Q ss_pred cccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceee
Q 045270 154 ALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLN 233 (440)
Q Consensus 154 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 233 (440)
.|++|++++|.+. .+|. +..+++|+.|++++|.+. .++ ..+..+++|+.|++++|.++..+ .+..+++|+.|+
T Consensus 442 ~L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~-~lp-~~~~~l~~L~~L~Ls~N~l~~lp---~l~~l~~L~~L~ 514 (567)
T 1dce_A 442 DVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALP-PALAALRCLEVLQASDNALENVD---GVANLPRLQELL 514 (567)
T ss_dssp TCSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCC-GGGGGCTTCCEEECCSSCCCCCG---GGTTCSSCCEEE
T ss_pred CceEEEecCCCCC-CCcC-ccccccCcEeecCccccc-ccc-hhhhcCCCCCEEECCCCCCCCCc---ccCCCCCCcEEE
Confidence 4666777777666 3554 666777777777777665 444 35667777777777777766532 356677777777
Q ss_pred cCCCCCCCC--CC-CcccCcccEEeccCcccccccCcccc-cccccceeEEE
Q 045270 234 LASCKLREI--PN-LKNQSQLQYLYLSENQISREIPNWIW-RVSVVGLHCLN 281 (440)
Q Consensus 234 l~~~~l~~l--~~-~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~ 281 (440)
+++|.++.+ |. +..+++|+.|++++|.+++..+.... ....++|+.|+
T Consensus 515 Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 515 LCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp CCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 777777766 44 67777777777777777654332211 11234566654
No 118
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.62 E-value=6e-16 Score=140.64 Aligned_cols=215 Identities=17% Similarity=0.158 Sum_probs=101.4
Q ss_pred ccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCC----CCCCCCC--CcccC
Q 045270 176 LKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASC----KLREIPN--LKNQS 249 (440)
Q Consensus 176 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~----~l~~l~~--~~~~~ 249 (440)
+++|++|.+.+ .+. .++...|.+|++|+.+++.++.+....... |..+.++..+..... ....+.. +..+.
T Consensus 100 ~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~a-F~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 100 KQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEA-LADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp CTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTS-SCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred cCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhh-hcCCCceEEecCcchhhhhcccccccccccccc
Confidence 77777777776 555 566666777777777777777665544443 444444544444331 1112221 33344
Q ss_pred ccc-EEeccCcccccccCcccccccccceeEEEccCcccccccCCccCCceeEEEcCCccccC---cccCCCCCccEEEc
Q 045270 250 QLQ-YLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRG---NIHQLPNNLIYIDF 325 (440)
Q Consensus 250 ~L~-~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~L~~L~L 325 (440)
.|+ .+.+.... ..+..+... .....++..+.+.+.-... .+...+++|+.+++
T Consensus 177 ~L~~~i~~~~~~---~l~~~~~~~--------------------~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L 233 (329)
T 3sb4_A 177 PLETTIQVGAMG---KLEDEIMKA--------------------GLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDI 233 (329)
T ss_dssp CCEEEEEECTTC---CHHHHHHHT--------------------TCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEEC
T ss_pred ccceeEEecCCC---cHHHHHhhc--------------------ccCccccceEEEeeeecHHHHHHHHHhcCCCeEEEC
Confidence 444 22222110 011110000 0012222222222210000 00011345666666
Q ss_pred cCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCC-EEEcCCCcCCCCCc-hhhhc-cccEEECCCCccc
Q 045270 326 SNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLS-LLDLSNNSFMKKSD-AFLNC-LLQTLDLNGNRLQ 402 (440)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~-~L~l~~n~i~~~~~-~~~~~-~L~~L~l~~n~~~ 402 (440)
++|.++ .++...|..+++|+.+++.+| ++.+...+|.+|++|+ .+++.+ .++.++. ++..+ +|+.+++++|.+.
T Consensus 234 ~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~ 310 (329)
T 3sb4_A 234 SKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT 310 (329)
T ss_dssp TTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC
T ss_pred CCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC
Confidence 655555 555555555666666666665 5445555666666666 666655 4555432 22222 3555555555555
Q ss_pred CCchhhhhcCCCCcEEE
Q 045270 403 GTVPKSIANCKMLEVLN 419 (440)
Q Consensus 403 ~~~~~~~~~l~~L~~L~ 419 (440)
...+.+|.++++|+.++
T Consensus 311 ~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 311 TLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECTTTTCTTCCCCEEE
T ss_pred ccchhhhcCCcchhhhc
Confidence 45555555555555554
No 119
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.61 E-value=7.8e-18 Score=163.28 Aligned_cols=199 Identities=19% Similarity=0.141 Sum_probs=139.5
Q ss_pred CCccccceeecCCCCCCCCCC-CcccCcccEEeccCcc-------------cccccCcccccccccceeEEE-ccCcccc
Q 045270 224 SFSPMLELLNLASCKLREIPN-LKNQSQLQYLYLSENQ-------------ISREIPNWIWRVSVVGLHCLN-LSHNLLV 288 (440)
Q Consensus 224 ~~~~~L~~L~l~~~~l~~l~~-~~~~~~L~~L~l~~~~-------------~~~~~~~~~~~~~~~~L~~L~-l~~~~~~ 288 (440)
...+.|+.|++++|.++.+|. +..++.|+.|++++|. ..+..|..+..+ ++|+.|+ ++.+.+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l--~~L~~L~~l~~n~~- 422 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYF--STLKAVDPMRAAYL- 422 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHH--HHHHHHCGGGHHHH-
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHH--HhcccCcchhhccc-
Confidence 456778888888888887777 7788888888886653 122222222211 1233333 222221
Q ss_pred cccCCccCCceeEEEcCCccccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCC
Q 045270 289 GFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATT 368 (440)
Q Consensus 289 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~ 368 (440)
..|+.+.+.+|.+.... +..|+.|++++|.++ .+|. +.. +++|+.|++++|.++ .+|..+..+++
T Consensus 423 --------~~L~~l~l~~n~i~~l~---~~~L~~L~Ls~n~l~-~lp~-~~~-l~~L~~L~Ls~N~l~-~lp~~~~~l~~ 487 (567)
T 1dce_A 423 --------DDLRSKFLLENSVLKME---YADVRVLHLAHKDLT-VLCH-LEQ-LLLVTHLDLSHNRLR-ALPPALAALRC 487 (567)
T ss_dssp --------HHHHHHHHHHHHHHHHH---HTTCSEEECTTSCCS-SCCC-GGG-GTTCCEEECCSSCCC-CCCGGGGGCTT
T ss_pred --------chhhhhhhhcccccccC---ccCceEEEecCCCCC-CCcC-ccc-cccCcEeecCccccc-ccchhhhcCCC
Confidence 12222333333333211 135889999999998 5776 544 899999999999999 67889999999
Q ss_pred CCEEEcCCCcCCCCCchhhhccccEEECCCCcccCCc-hhhhhcCCCCcEEECCCCcccccCccc---ccCCCCCC
Q 045270 369 LSLLDLSNNSFMKKSDAFLNCLLQTLDLNGNRLQGTV-PKSIANCKMLEVLNLGNNQFSDKFPCW---LYDAPSLH 440 (440)
Q Consensus 369 L~~L~l~~n~i~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~---l~~~~~L~ 440 (440)
|+.|++++|.++.+|.....++|+.|++++|.+++.. |..++.+++|+.|++++|++++..|.. +..+|+|+
T Consensus 488 L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~ 563 (567)
T 1dce_A 488 LEVLQASDNALENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVS 563 (567)
T ss_dssp CCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCS
T ss_pred CCEEECCCCCCCCCcccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccC
Confidence 9999999999999884444667999999999999886 899999999999999999998876532 23356553
No 120
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=3.1e-15 Score=121.86 Aligned_cols=132 Identities=24% Similarity=0.246 Sum_probs=59.9
Q ss_pred CCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEE
Q 045270 47 HYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYA 126 (440)
Q Consensus 47 ~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L 126 (440)
++|++|++++|.+....+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.++. .+..+++|++|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDM-LAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCH-HHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHH-HHhhCCCCCEE
Confidence 44444444444443112444444444555555554444422 3444444555555555544432222 23344555555
Q ss_pred EecCCccCCCCC--ccccccccccccCcccccEEEcCCCccCCccc---cccccccCccEEeccccccc
Q 045270 127 VLSDNSLNGSIP--RSMFEFPIFSNASSSALDTLDLSGNRLRGSIP---VSVFELKKLTSLLLSSNNLH 190 (440)
Q Consensus 127 ~l~~~~~~~~~~--~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~ 190 (440)
++++|.++ .++ ..+.. +++|++|++++|.+....+ ..+..+++|++|++.+|.+.
T Consensus 101 ~Ls~N~l~-~~~~~~~l~~--------l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 101 NLSGNKLK-DISTLEPLKK--------LECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ECBSSSCC-SSGGGGGGSS--------CSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred eccCCccC-cchhHHHHhc--------CCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 55555444 222 22222 2455555555555552222 24555566666666655543
No 121
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.58 E-value=7.9e-15 Score=122.03 Aligned_cols=129 Identities=23% Similarity=0.308 Sum_probs=92.6
Q ss_pred eEEEcCCccccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcC
Q 045270 300 RFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSF 379 (440)
Q Consensus 300 ~~L~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i 379 (440)
++++++++++.......+.++++|++++|.+.+..+...+..+++|++|++++|.+++..+..|..+++|++|++++|++
T Consensus 11 ~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 90 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI 90 (192)
T ss_dssp TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcC
Confidence 45555555555444444557788888888776333333344478888888888888877777888888888888888888
Q ss_pred CCCCchhh--hccccEEECCCCcccCCchhhhhcCCCCcEEECCCCccccc
Q 045270 380 MKKSDAFL--NCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDK 428 (440)
Q Consensus 380 ~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 428 (440)
+.++...+ ..+|+.|++++|++++..|..|..+++|+.|++++|++...
T Consensus 91 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred CccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence 77754322 45688888888888877777888888888888888887644
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.58 E-value=1.2e-15 Score=152.66 Aligned_cols=204 Identities=15% Similarity=0.105 Sum_probs=110.4
Q ss_pred CCCcceeeeeeCCCCceEEEeeccceeecccCCCccccccCCCCeEEec-----CCccCCCccccchhcCCCCcEEEccc
Q 045270 7 TDCCDWSGVDCDEAGHVIGLDLSTESISGGIENAASLFSLHYLRSLNLA-----RTSFNGTQIPSKLANISSLTYLNLSD 81 (440)
Q Consensus 7 ~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~-----~~~~~~~~l~~~~~~l~~L~~L~l~~ 81 (440)
+....|.++.++. ++++.|+|+++.+... +. .+.....|+.+.+. .+.+. ..+..+..++.|++|+|++
T Consensus 160 ~~~~~~~~~~~s~-~~~~~l~L~~n~~~~~-~~--~~l~~l~Ls~~~i~~~~~~~n~~~--~~~~~~~~l~~L~~L~Ls~ 233 (727)
T 4b8c_D 160 TPSGTATNSAVST-PLTPKIELFANGKDEA-NQ--ALLQHKKLSQYSIDEDDDIENRMV--MPKDSKYDDQLWHALDLSN 233 (727)
T ss_dssp --------------------------------------------------------------------CCCCCCEEECTT
T ss_pred CccccCCCceecC-CccceEEeeCCCCCcc-hh--hHhhcCccCcccccCcccccccee--cChhhhccCCCCcEEECCC
Confidence 4456677666655 6799999999887653 22 33333344443332 23332 1467788999999999999
Q ss_pred CccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcC
Q 045270 82 AGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLS 161 (440)
Q Consensus 82 ~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~ 161 (440)
|.+. .+|..+..+++|++|+|++|.++ .++. .+..+++|+.|+|++|.++ .+|..++.+ ++|++|+++
T Consensus 234 n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l--------~~L~~L~L~ 301 (727)
T 4b8c_D 234 LQIF-NISANIFKYDFLTRLYLNGNSLT-ELPA-EIKNLSNLRVLDLSHNRLT-SLPAELGSC--------FQLKYFYFF 301 (727)
T ss_dssp SCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCG-GGGGGTTCCEEECTTSCCS-SCCSSGGGG--------TTCSEEECC
T ss_pred CCCC-CCChhhcCCCCCCEEEeeCCcCc-ccCh-hhhCCCCCCEEeCcCCcCC-ccChhhcCC--------CCCCEEECC
Confidence 9998 78888889999999999999998 6654 5799999999999999998 889888766 689999999
Q ss_pred CCccCCccccccccccCccEEeccccccccccchhhHhcCC-CCcEEEcCCCcccccCCccccCCccccceeecCCC
Q 045270 162 GNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLG-NLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASC 237 (440)
Q Consensus 162 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 237 (440)
+|.+. .+|..|..+++|+.|++++|.+.+..+ ..+..+. .+..+++.+|.++...+ ..|+.|++..+
T Consensus 302 ~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~~~~~~~~l~l~~N~l~~~~p-------~~l~~l~l~~n 369 (727)
T 4b8c_D 302 DNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFL-KILTEKSVTGLIFYLRDNRPEIPLP-------HERRFIEINTD 369 (727)
T ss_dssp SSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHH-HHHHHHHHHHHHHHHHHCCCCCCCC-------CC---------
T ss_pred CCCCC-ccChhhhcCCCccEEeCCCCccCCCCh-HHHhhcchhhhHHhhccCcccCcCc-------cccceeEeecc
Confidence 99997 788889999999999999999975443 3333221 12235566666643332 33556666555
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=4.3e-15 Score=118.35 Aligned_cols=128 Identities=20% Similarity=0.205 Sum_probs=55.8
Q ss_pred CCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcccccceEE
Q 045270 47 HYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYA 126 (440)
Q Consensus 47 ~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L 126 (440)
++|++|++++|.+....+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.++. .+..+++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEV-LAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHH-HHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHH-HhhhCCCCCEE
Confidence 34444444444443112344444444444444444444422 3344444444444444444432222 23344445555
Q ss_pred EecCCccCCC-CCccccccccccccCcccccEEEcCCCccCCccc---cccccccCccEEecc
Q 045270 127 VLSDNSLNGS-IPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIP---VSVFELKKLTSLLLS 185 (440)
Q Consensus 127 ~l~~~~~~~~-~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~ 185 (440)
++++|.+++. .+..+..+ ++|++|++++|.+.+..+ ..+..+++|++|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l--------~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKL--------ENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGC--------TTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhC--------CCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 5555444421 11233222 455555555555542222 244555556555543
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.56 E-value=2.3e-14 Score=130.14 Aligned_cols=100 Identities=20% Similarity=0.163 Sum_probs=76.1
Q ss_pred ccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccc-eeecCCCCCCCCCC--CcccCccc
Q 045270 176 LKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLE-LLNLASCKLREIPN--LKNQSQLQ 252 (440)
Q Consensus 176 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~l~~l~~--~~~~~~L~ 252 (440)
+++|+.+++++|.+. .++...|.++.+|+.+++.++ +....... |..+++|+ .+.+.+ .++.++. |..|++|+
T Consensus 225 ~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~a-F~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRV-FSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTT-TTTCTTCCEEEEECT-TCCEECTTTTTTCTTEE
T ss_pred cCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHH-hhCChhccEEEEEcc-cceEEchhhhhCCccCC
Confidence 678888888888877 777788888888999988887 55554444 77888888 888888 7777765 88888999
Q ss_pred EEeccCcccccccCcccccccccceeEEE
Q 045270 253 YLYLSENQISREIPNWIWRVSVVGLHCLN 281 (440)
Q Consensus 253 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 281 (440)
.++++++.+....+..|..+ ++|+.+.
T Consensus 301 ~l~l~~n~i~~I~~~aF~~~--~~L~~ly 327 (329)
T 3sb4_A 301 YVLATGDKITTLGDELFGNG--VPSKLIY 327 (329)
T ss_dssp EEEECSSCCCEECTTTTCTT--CCCCEEE
T ss_pred EEEeCCCccCccchhhhcCC--cchhhhc
Confidence 99988888776555566443 3476664
No 125
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.55 E-value=2.2e-13 Score=126.88 Aligned_cols=97 Identities=14% Similarity=0.165 Sum_probs=56.5
Q ss_pred cccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCc-hhhhc-cccEEECCCCcccCCchhhhhcCCCCc
Q 045270 339 GNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSD-AFLNC-LLQTLDLNGNRLQGTVPKSIANCKMLE 416 (440)
Q Consensus 339 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~-~L~~L~l~~n~~~~~~~~~~~~l~~L~ 416 (440)
+..+++|+.+.+.++ ++.+...+|.+|++|+.++|.. .++.++. ++..+ +|+.+.+..+ ++.....+|.+|++|+
T Consensus 293 F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 369 (394)
T 4fs7_A 293 FYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK 369 (394)
T ss_dssp TTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred ccccccccccccccc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence 333566666666543 3334455666666777776643 3555533 33332 3777777655 5545566788888888
Q ss_pred EEECCCCcccccCcccccCCCCCC
Q 045270 417 VLNLGNNQFSDKFPCWLYDAPSLH 440 (440)
Q Consensus 417 ~L~l~~n~~~~~~~~~l~~~~~L~ 440 (440)
.+++..+- ..+...|.+|++||
T Consensus 370 ~i~lp~~~--~~~~~~F~~c~~L~ 391 (394)
T 4fs7_A 370 KVELPKRL--EQYRYDFEDTTKFK 391 (394)
T ss_dssp EEEEEGGG--GGGGGGBCTTCEEE
T ss_pred EEEECCCC--EEhhheecCCCCCc
Confidence 88876542 22345577776653
No 126
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.55 E-value=4.2e-14 Score=117.59 Aligned_cols=124 Identities=23% Similarity=0.273 Sum_probs=91.7
Q ss_pred EEEcCCccccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCC
Q 045270 301 FIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFM 380 (440)
Q Consensus 301 ~L~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~ 380 (440)
.++++++++.......++++++|++++|.+. .+|..+.. +++|+.|++++|.+++..+..|..+++|++|++++|.++
T Consensus 14 ~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~-l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~ 91 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSN-YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91 (193)
T ss_dssp EEECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGG-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred EEEcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhc-ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccC
Confidence 4555555555444445567888888888877 67754444 788888888888888777777888888888888888888
Q ss_pred CCCchhh--hccccEEECCCCcccCCchhhhhcCCCCcEEECCCCccc
Q 045270 381 KKSDAFL--NCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFS 426 (440)
Q Consensus 381 ~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 426 (440)
.++...+ ..+|+.|++++|.++...+..|..+++|+.|++++|++.
T Consensus 92 ~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 8755333 356888888888888666667888888888888888775
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.55 E-value=4e-14 Score=116.27 Aligned_cols=130 Identities=18% Similarity=0.248 Sum_probs=88.5
Q ss_pred eEEEcCCccccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcC
Q 045270 300 RFIDLSSHQLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSF 379 (440)
Q Consensus 300 ~~L~l~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i 379 (440)
+.++++++++.......++++++|++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 10 ~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l 88 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKL 88 (177)
T ss_dssp TEEECCSSCCSSCCTTCCTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEecCCCCccCCCCCCCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCc
Confidence 34445555554444444567777777777776 45554444477888888888877766666677778888888888887
Q ss_pred CCCCchhh--hccccEEECCCCcccCCchhhhhcCCCCcEEECCCCcccccCc
Q 045270 380 MKKSDAFL--NCLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFP 430 (440)
Q Consensus 380 ~~~~~~~~--~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 430 (440)
+.++...+ ..+|+.|++++|.+++..+..+..+++|+.|++++|++.+..|
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 89 QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 77755433 4568888888888876666667777888888888887765443
No 128
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.54 E-value=2.2e-14 Score=114.19 Aligned_cols=119 Identities=22% Similarity=0.246 Sum_probs=60.2
Q ss_pred CCccEEEccCCccc-ccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCC-CCchhh-hccccEE
Q 045270 318 NNLIYIDFSNNNFT-SSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMK-KSDAFL-NCLLQTL 394 (440)
Q Consensus 318 ~~L~~L~L~~~~~~-~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~-~~~~~~-~~~L~~L 394 (440)
+++++|++++|.+. +.+|..+.. +++|+.|++++|.+++. ..+..+++|++|++++|.+.+ ++..+. .++|+.|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~-l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDE-FEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTT-CTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhh-cCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 34555555555554 344443333 55555555555555533 445555555555555555555 233222 3445555
Q ss_pred ECCCCcccCC-chhhhhcCCCCcEEECCCCcccccCc---ccccCCCCC
Q 045270 395 DLNGNRLQGT-VPKSIANCKMLEVLNLGNNQFSDKFP---CWLYDAPSL 439 (440)
Q Consensus 395 ~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~---~~l~~~~~L 439 (440)
++++|.+++. .+..+..+++|+.|++++|++++..+ ..+..+++|
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L 142 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQL 142 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTC
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCc
Confidence 5555555542 22445555556666666655554444 344444444
No 129
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.54 E-value=3e-14 Score=115.90 Aligned_cols=132 Identities=22% Similarity=0.172 Sum_probs=93.6
Q ss_pred CCCCcEEEcccCccc-cCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccc
Q 045270 71 ISSLTYLNLSDAGFA-GHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSN 149 (440)
Q Consensus 71 l~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~ 149 (440)
.++|++|++++|.+. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+..+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l----- 94 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKL----- 94 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHC-----
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhC-----
Confidence 477888888888886 56777778888888888888887743 357778888888888888875555544333
Q ss_pred cCcccccEEEcCCCccCCccc--cccccccCccEEeccccccccccch---hhHhcCCCCcEEEcCCCccc
Q 045270 150 ASSSALDTLDLSGNRLRGSIP--VSVFELKKLTSLLLSSNNLHGTVQL---DKILNLGNLAKLDLSYNSLA 215 (440)
Q Consensus 150 ~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~~ 215 (440)
++|++|++++|.+.+ ++ ..+..+++|++|++++|.+. ..+. ..+..+++|+.|++++|.+.
T Consensus 95 ---~~L~~L~Ls~N~l~~-~~~~~~l~~l~~L~~L~l~~N~l~-~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 95 ---PNLTHLNLSGNKLKD-ISTLEPLKKLECLKSLDLFNCEVT-NLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp ---TTCCEEECBSSSCCS-SGGGGGGSSCSCCCEEECCSSGGG-TSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred ---CCCCEEeccCCccCc-chhHHHHhcCCCCCEEEeeCCcCc-chHHHHHHHHHhCccCcEecCCCCChh
Confidence 577888888887763 33 56667777777777777775 3332 35666677777777666554
No 130
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.51 E-value=7.4e-14 Score=114.64 Aligned_cols=129 Identities=18% Similarity=0.240 Sum_probs=92.0
Q ss_pred EEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCC
Q 045270 25 GLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFS 104 (440)
Q Consensus 25 ~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~ 104 (440)
.++++++.++. +|. . ..++|++|++++|.+... .+..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 11 ~l~~~~~~l~~-~p~--~--~~~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 84 (177)
T 2o6r_A 11 EIRCNSKGLTS-VPT--G--IPSSATRLELESNKLQSL-PHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH 84 (177)
T ss_dssp EEECCSSCCSS-CCT--T--CCTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred EEEecCCCCcc-CCC--C--CCCCCcEEEeCCCcccEe-CHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence 34444555543 222 2 236888889988888654 44567888889999998888886555667888889999999
Q ss_pred CCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCc
Q 045270 105 FNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGS 168 (440)
Q Consensus 105 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~ 168 (440)
+|.++ .++...+..+++|++|++++|.++ .+|.... ..+++|++|++++|++.+.
T Consensus 85 ~N~l~-~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~-------~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 85 ENKLQ-SLPNGVFDKLTQLKELALDTNQLK-SVPDGIF-------DRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp SSCCC-CCCTTTTTTCTTCCEEECCSSCCS-CCCTTTT-------TTCTTCCEEECCSSCBCCC
T ss_pred CCCcc-ccCHHHhhCCcccCEEECcCCcce-EeCHHHh-------cCCcccCEEEecCCCeecc
Confidence 98888 444446788889999999998887 4444432 2236888999998887743
No 131
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.49 E-value=1.6e-13 Score=114.06 Aligned_cols=132 Identities=23% Similarity=0.288 Sum_probs=84.8
Q ss_pred CeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcc-cccccccCceecCCCCcccCccchhhhcccccceEEEe
Q 045270 50 RSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPL-QISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVL 128 (440)
Q Consensus 50 ~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l 128 (440)
+.++++++.+.. +|..+. .+|++|++++|.+.+..+. .+..+++|++|++++|.+++..+ ..+..+++|++|++
T Consensus 11 ~~l~~s~~~l~~--ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGRGLKE--IPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEP-NAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTSCCSS--CCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCT-TTTTTCTTCCEEEC
T ss_pred CEEEcCCCCcCc--CccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCH-hHcCCcccCCEEEC
Confidence 677777777633 565554 3777777777777644433 36777777777777777763333 35667777777777
Q ss_pred cCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccc
Q 045270 129 SDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQ 194 (440)
Q Consensus 129 ~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 194 (440)
++|.+++..+..+..+ ++|++|++++|.+.+..|..+..+++|++|++++|.+....+
T Consensus 86 s~N~l~~~~~~~~~~l--------~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 86 GENKIKEISNKMFLGL--------HQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CSCCCCEECSSSSTTC--------TTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CCCcCCccCHHHhcCC--------CCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 7777765444444333 567777777777765556666666677777777666654433
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.47 E-value=6.3e-13 Score=110.43 Aligned_cols=126 Identities=23% Similarity=0.365 Sum_probs=76.6
Q ss_pred EEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecC
Q 045270 24 IGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDF 103 (440)
Q Consensus 24 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 103 (440)
++++++++.++. +|. .+ .++|++|++++|.+.. +|..|..+++|++|++++|.+.+..+..|..+++|++|+|
T Consensus 13 ~~l~~~~~~l~~-ip~--~~--~~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~L 85 (193)
T 2wfh_A 13 TVVRCSNKGLKV-LPK--GI--PRDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL 85 (193)
T ss_dssp TEEECTTSCCSS-CCS--CC--CTTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCCCCCc-CCC--CC--CCCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEEC
Confidence 356666666653 333 22 2567777777777752 5667777777777777777777555566777777777777
Q ss_pred CCCcccCccchhhhcccccceEEEecCCccCCCCCc-cccccccccccCcccccEEEcCCCccC
Q 045270 104 SFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPR-SMFEFPIFSNASSSALDTLDLSGNRLR 166 (440)
Q Consensus 104 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~l~~~~~~~L~~L~l~~~~~~ 166 (440)
++|.++ .++...+..+++|++|++++|.++ .+|. .+..+ ++|+.|++++|++.
T Consensus 86 s~N~l~-~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l--------~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 86 SYNRLR-CIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDL--------SALSHLAIGANPLY 139 (193)
T ss_dssp CSSCCC-BCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTC--------TTCCEEECCSSCEE
T ss_pred CCCccC-EeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcC--------ccccEEEeCCCCee
Confidence 777766 333335666666666666666665 3332 23222 45556666555543
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.46 E-value=1.8e-13 Score=112.19 Aligned_cols=133 Identities=17% Similarity=0.158 Sum_probs=96.5
Q ss_pred cccccCCCCeEEecCCccCCCccccchhcC-CCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhccc
Q 045270 42 SLFSLHYLRSLNLARTSFNGTQIPSKLANI-SSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHL 120 (440)
Q Consensus 42 ~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l 120 (440)
.+..+++|++|++++|.+.. ++. +..+ ++|++|++++|.+.+. ..+..+++|++|++++|.+. .++...+..+
T Consensus 14 ~~~~~~~L~~L~l~~n~l~~--i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l 87 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGYKIPV--IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQAL 87 (176)
T ss_dssp EEECTTSCEEEECTTSCCCS--CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHC
T ss_pred hcCCcCCceEEEeeCCCCch--hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcC
Confidence 57788888888888888763 443 4444 4888888888888743 57788888888888888887 4444446788
Q ss_pred ccceEEEecCCccCCCCCc--cccccccccccCcccccEEEcCCCccCCccccc----cccccCccEEeccccccc
Q 045270 121 LNLVYAVLSDNSLNGSIPR--SMFEFPIFSNASSSALDTLDLSGNRLRGSIPVS----VFELKKLTSLLLSSNNLH 190 (440)
Q Consensus 121 ~~L~~L~l~~~~~~~~~~~--~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~L~~L~l~~~~~~ 190 (440)
++|++|++++|.+. .+|. .+.. +++|++|++++|++. ..+.. +..+++|+.|++++|...
T Consensus 88 ~~L~~L~L~~N~i~-~~~~~~~l~~--------l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 88 PDLTELILTNNSLV-ELGDLDPLAS--------LKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp TTCCEEECCSCCCC-CGGGGGGGGG--------CTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCCEEECCCCcCC-cchhhHhhhc--------CCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 88888888888885 4554 3433 367888888888876 45543 667788888888777654
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.45 E-value=4.1e-14 Score=141.54 Aligned_cols=169 Identities=20% Similarity=0.261 Sum_probs=112.5
Q ss_pred CceEEEeeccceeecc---------cCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCccc
Q 045270 21 GHVIGLDLSTESISGG---------IENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQ 91 (440)
Q Consensus 21 ~~l~~L~l~~~~~~~~---------~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~ 91 (440)
..++.++|+.+.+.+. .+. .+..++.|+.|++++|.+. .++..+..+++|++|+|++|.+. .+|..
T Consensus 191 ~~l~~l~Ls~~~i~~~~~~~n~~~~~~~--~~~~l~~L~~L~Ls~n~l~--~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~ 265 (727)
T 4b8c_D 191 ALLQHKKLSQYSIDEDDDIENRMVMPKD--SKYDDQLWHALDLSNLQIF--NISANIFKYDFLTRLYLNGNSLT-ELPAE 265 (727)
T ss_dssp ---------------------------------CCCCCCEEECTTSCCS--CCCGGGGGCCSCSCCBCTTSCCS-CCCGG
T ss_pred hHhhcCccCcccccCccccccceecChh--hhccCCCCcEEECCCCCCC--CCChhhcCCCCCCEEEeeCCcCc-ccChh
Confidence 3445555555554432 233 6889999999999999986 37888889999999999999998 88999
Q ss_pred ccccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCcccc
Q 045270 92 ISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPV 171 (440)
Q Consensus 92 ~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~ 171 (440)
|.++++|++|+|++|.++ .++. .++.+++|++|+|++|.++ .+|..++.+ ++|++|++++|.+.+..|.
T Consensus 266 ~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~L~~N~l~-~lp~~~~~l--------~~L~~L~L~~N~l~~~~p~ 334 (727)
T 4b8c_D 266 IKNLSNLRVLDLSHNRLT-SLPA-ELGSCFQLKYFYFFDNMVT-TLPWEFGNL--------CNLQFLGVEGNPLEKQFLK 334 (727)
T ss_dssp GGGGTTCCEEECTTSCCS-SCCS-SGGGGTTCSEEECCSSCCC-CCCSSTTSC--------TTCCCEECTTSCCCSHHHH
T ss_pred hhCCCCCCEEeCcCCcCC-ccCh-hhcCCCCCCEEECCCCCCC-ccChhhhcC--------CCccEEeCCCCccCCCChH
Confidence 999999999999999998 5554 4899999999999999997 888887655 7999999999999877776
Q ss_pred ccccccC-ccEEeccccccccccchhhHhcCCCCcEEEcCCC
Q 045270 172 SVFELKK-LTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYN 212 (440)
Q Consensus 172 ~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 212 (440)
.+..... ...+++.+|.+.+.++ ..|+.|+++.+
T Consensus 335 ~~~~~~~~~~~l~l~~N~l~~~~p-------~~l~~l~l~~n 369 (727)
T 4b8c_D 335 ILTEKSVTGLIFYLRDNRPEIPLP-------HERRFIEINTD 369 (727)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCCCC-------CC---------
T ss_pred HHhhcchhhhHHhhccCcccCcCc-------cccceeEeecc
Confidence 6644321 2235566666654333 23455555554
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.43 E-value=2.3e-13 Score=111.56 Aligned_cols=129 Identities=20% Similarity=0.187 Sum_probs=91.5
Q ss_pred CCceeEEEcCCccccCc--ccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEE
Q 045270 296 IPALRFIDLSSHQLRGN--IHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLD 373 (440)
Q Consensus 296 ~~~L~~L~l~~~~~~~~--~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~ 373 (440)
++++++|++++|++... .....++|+.|++++|.+.+ + ..+. .+++|++|++++|.+++..+..+..+++|++|+
T Consensus 18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~-~-~~l~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 94 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK-L-DGFP-LLRRLKTLLVNNNRICRIGEGLDQALPDLTELI 94 (176)
T ss_dssp TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE-E-CCCC-CCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCc-c-cccc-cCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence 44455555555544422 11123477788888887773 3 2333 388999999999999866556668899999999
Q ss_pred cCCCcCCCCCc--hhh-hccccEEECCCCcccCCchh---hhhcCCCCcEEECCCCcccc
Q 045270 374 LSNNSFMKKSD--AFL-NCLLQTLDLNGNRLQGTVPK---SIANCKMLEVLNLGNNQFSD 427 (440)
Q Consensus 374 l~~n~i~~~~~--~~~-~~~L~~L~l~~n~~~~~~~~---~~~~l~~L~~L~l~~n~~~~ 427 (440)
+++|.+..++. .+. .++|+.|++++|++...... .+..+++|+.|++++|...+
T Consensus 95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 95 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 99999988765 222 45699999999999854333 58899999999999997754
No 136
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.43 E-value=5.7e-12 Score=116.84 Aligned_cols=239 Identities=17% Similarity=0.189 Sum_probs=145.8
Q ss_pred cccEEEcCCCccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceee
Q 045270 154 ALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLN 233 (440)
Q Consensus 154 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~ 233 (440)
+|+.+.+..+ +.......|.+ .+|+.+.+.. .+. .+....|.+|.+|+.+++..+.++...... |. +..|+.+.
T Consensus 136 ~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~-~I~~~aF~~c~~L~~l~l~~n~l~~I~~~a-F~-~~~L~~l~ 209 (401)
T 4fdw_A 136 QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLE-QLKEDIFYYCYNLKKADLSKTKITKLPAST-FV-YAGIEEVL 209 (401)
T ss_dssp CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCC-EECSSTTTTCTTCCEEECTTSCCSEECTTT-TT-TCCCSEEE
T ss_pred CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-Ccc-EehHHHhhCcccCCeeecCCCcceEechhh-Ee-ecccCEEE
Confidence 6777777655 44233344555 4688887775 444 556667778888888888877776665555 33 46788887
Q ss_pred cCCCCCCCCCC--CcccCcccEEeccCcccccccCcccccccccceeEEEccCcccccccCCccCCceeEEEcCCccccC
Q 045270 234 LASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRG 311 (440)
Q Consensus 234 l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 311 (440)
+..+ ++.++. |..+++|+.+++..+ +.......|.. .+|+.+.+.+ .+..+. .
T Consensus 210 lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~---~~L~~i~lp~-~i~~I~-------------------~ 264 (401)
T 4fdw_A 210 LPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE---SGITTVKLPN-GVTNIA-------------------S 264 (401)
T ss_dssp CCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT---CCCSEEEEET-TCCEEC-------------------T
T ss_pred eCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc---CCccEEEeCC-CccEEC-------------------h
Confidence 7643 665555 777778888877653 33222333322 2355555532 222221 1
Q ss_pred cccCCCCCccEEEccCCccc----ccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCC-Cchh
Q 045270 312 NIHQLPNNLIYIDFSNNNFT----SSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKK-SDAF 386 (440)
Q Consensus 312 ~~~~~~~~L~~L~L~~~~~~----~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~-~~~~ 386 (440)
..+..+++|+.+.+.++.+. ..++...+..+++|+.+.+.+ .++.+...+|.+|++|+.+.|..+ ++.+ ..++
T Consensus 265 ~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF 342 (401)
T 4fdw_A 265 RAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAF 342 (401)
T ss_dssp TTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSS
T ss_pred hHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhC
Confidence 22223345555555444332 135555666678888888874 466566677888888888888544 6665 3344
Q ss_pred hhccccEEECCCCcccCCchhhhhcCC-CCcEEECCCCcc
Q 045270 387 LNCLLQTLDLNGNRLQGTVPKSIANCK-MLEVLNLGNNQF 425 (440)
Q Consensus 387 ~~~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~l~~n~~ 425 (440)
..++|+.+++.+|.........|..++ +++.|.+..+.+
T Consensus 343 ~~~~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 343 NNTGIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp SSSCCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred CCCCCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 455788888888877766666777774 677888776654
No 137
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.43 E-value=5e-12 Score=117.20 Aligned_cols=199 Identities=14% Similarity=0.187 Sum_probs=126.8
Q ss_pred ccceeecCCCCCCCCCC--CcccCcccEEeccCcccccccCcccccccccceeEEEccCcccccccCC--ccCCceeEEE
Q 045270 228 MLELLNLASCKLREIPN--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGP--YSIPALRFID 303 (440)
Q Consensus 228 ~L~~L~l~~~~l~~l~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~L~~L~ 303 (440)
+|+.+.+.. .++.++. |..|++|+.+++..|.+.......|. ..+|+.+.+..+ +..+... ..|++|+.+.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~---~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~ 232 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV---YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIE 232 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT---TCCCSEEECCTT-CCEECTTTTTTCTTCCCEE
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe---ecccCEEEeCCc-hheehhhHhhCCCCCCEEe
Confidence 355555543 3443333 55555555555555544432222222 133555555432 3333222 3456666666
Q ss_pred cCCcc--ccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEeccccccc-----ccchhhhhccCCCCEEEcCC
Q 045270 304 LSSHQ--LRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLT-----GIIPASLCNATTLSLLDLSN 376 (440)
Q Consensus 304 l~~~~--~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-----~~~~~~~~~~~~L~~L~l~~ 376 (440)
+..+- +....+.. .+|+.+.+. +.++ .++...+..+++|+.+++.++.+. .+...+|.+|++|+.+.+.
T Consensus 233 l~~~l~~I~~~aF~~-~~L~~i~lp-~~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~- 308 (401)
T 4fdw_A 233 IPENVSTIGQEAFRE-SGITTVKLP-NGVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP- 308 (401)
T ss_dssp CCTTCCEECTTTTTT-CCCSEEEEE-TTCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-
T ss_pred cCCCccCcccccccc-CCccEEEeC-CCcc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-
Confidence 65431 11122222 578888885 3455 677777777999999999888664 4667889999999999998
Q ss_pred CcCCCCCchhh-h-ccccEEECCCCcccCCchhhhhcCCCCcEEECCCCcccccCcccccCCC
Q 045270 377 NSFMKKSDAFL-N-CLLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDAP 437 (440)
Q Consensus 377 n~i~~~~~~~~-~-~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~ 437 (440)
+.++.++...+ . .+|+.+.|..+ ++.....+|.++ +|+.+++.+|......+..|.+++
T Consensus 309 ~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~ 369 (401)
T 4fdw_A 309 ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFP 369 (401)
T ss_dssp TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSC
T ss_pred CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCC
Confidence 45888755444 4 46999999665 666777899999 999999999988776667777664
No 138
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.38 E-value=2.1e-11 Score=113.42 Aligned_cols=307 Identities=13% Similarity=0.133 Sum_probs=189.7
Q ss_pred cccCCcccccccccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCC
Q 045270 84 FAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGN 163 (440)
Q Consensus 84 ~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~ 163 (440)
++.....+|.++.+|+.+.+..+ ++ .+...+|..+++|+.+++..+ ++ .++...+ ..|..|+.+.+..+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~-~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF-------~~c~~L~~i~~p~~ 127 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VR-EIGEFAFENCSKLEIINIPDS-VK-MIGRCTF-------SGCYALKSILLPLM 127 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CC-EECTTTTTTCTTCCEECCCTT-CC-EECTTTT-------TTCTTCCCCCCCTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-cc-CcchhHhhCCCCCcEEEeCCC-ce-Eccchhh-------cccccchhhcccCc
Confidence 45455677889999999999754 44 666678888999999977644 32 2222222 45567777666543
Q ss_pred ccCCccccccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCC
Q 045270 164 RLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIP 243 (440)
Q Consensus 164 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~ 243 (440)
+.......|.++..+. ..+... .. .+....|.++.+|+.+.+..+. ..... ..+..+.+|+.+.+..+ ++.++
T Consensus 128 -l~~i~~~aF~~~~~~~-~~~~~~-~~-~i~~~aF~~c~~L~~i~l~~~~-~~I~~-~~F~~c~~L~~i~l~~~-~~~I~ 200 (394)
T 4fs7_A 128 -LKSIGVEAFKGCDFKE-ITIPEG-VT-VIGDEAFATCESLEYVSLPDSM-ETLHN-GLFSGCGKLKSIKLPRN-LKIIR 200 (394)
T ss_dssp -CCEECTTTTTTCCCSE-EECCTT-CC-EECTTTTTTCTTCCEEECCTTC-CEECT-TTTTTCTTCCBCCCCTT-CCEEC
T ss_pred -eeeecceeeecccccc-cccCcc-cc-ccchhhhcccCCCcEEecCCcc-ceecc-ccccCCCCceEEEcCCC-ceEeC
Confidence 2212333444444333 322222 11 3445567888888888886543 22222 23667778888887665 45444
Q ss_pred C--CcccCcccEEeccCcccccccCcccccccccceeEEEccCcccccccCCccCCceeEEEcCCccccCcccCCCCCcc
Q 045270 244 N--LKNQSQLQYLYLSENQISREIPNWIWRVSVVGLHCLNLSHNLLVGFQGPYSIPALRFIDLSSHQLRGNIHQLPNNLI 321 (440)
Q Consensus 244 ~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~L~ 321 (440)
. +..+..|+.+.+..+... +..... ...+++.+.+.... ..+.......+..++
T Consensus 201 ~~~F~~~~~L~~i~~~~~~~~--i~~~~~--~~~~l~~i~ip~~~--------------------~~i~~~~f~~~~~l~ 256 (394)
T 4fs7_A 201 DYCFAECILLENMEFPNSLYY--LGDFAL--SKTGVKNIIIPDSF--------------------TELGKSVFYGCTDLE 256 (394)
T ss_dssp TTTTTTCTTCCBCCCCTTCCE--ECTTTT--TTCCCCEEEECTTC--------------------CEECSSTTTTCSSCC
T ss_pred chhhccccccceeecCCCceE--eehhhc--ccCCCceEEECCCc--------------------eecccccccccccce
Confidence 4 777777777776554221 111111 11224444432211 011222333345677
Q ss_pred EEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCc-hhhhc-cccEEECCCC
Q 045270 322 YIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSD-AFLNC-LLQTLDLNGN 399 (440)
Q Consensus 322 ~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~-~L~~L~l~~n 399 (440)
.+.+..+.. .+....+..++.++.+......+. ...|..+.+|+.+.+..+ ++.++. ++..+ +|+.+++..+
T Consensus 257 ~~~~~~~~~--~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~ 330 (394)
T 4fs7_A 257 SISIQNNKL--RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL 330 (394)
T ss_dssp EEEECCTTC--EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT
T ss_pred eEEcCCCcc--eeeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc
Confidence 777765433 344555555888888887765433 356889999999999764 777744 44443 5999999754
Q ss_pred cccCCchhhhhcCCCCcEEECCCCcccccCcccccCCCCCC
Q 045270 400 RLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSLH 440 (440)
Q Consensus 400 ~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L~ 440 (440)
++.....+|.+|++|+.+++..+ +.......|.+|++|+
T Consensus 331 -v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 369 (394)
T 4fs7_A 331 -VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLK 369 (394)
T ss_dssp -CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCC
T ss_pred -ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCC
Confidence 66677789999999999999877 7777788899999885
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.36 E-value=3.6e-12 Score=103.55 Aligned_cols=102 Identities=25% Similarity=0.317 Sum_probs=55.1
Q ss_pred cEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchhh--hccccEEECCC
Q 045270 321 IYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFL--NCLLQTLDLNG 398 (440)
Q Consensus 321 ~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~--~~~L~~L~l~~ 398 (440)
+.++++++.++ .+|..+ .+.+++|++++|.+++..+..|..+++|++|++++|+++.++...+ ..+|+.|++++
T Consensus 12 ~~l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TEEECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 44555555554 444433 2455555555555555555555555555555555555555543322 33455556655
Q ss_pred CcccCCchhhhhcCCCCcEEECCCCccc
Q 045270 399 NRLQGTVPKSIANCKMLEVLNLGNNQFS 426 (440)
Q Consensus 399 n~~~~~~~~~~~~l~~L~~L~l~~n~~~ 426 (440)
|++....+..|..+++|+.|++++|++.
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 5555544455555666666666666554
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.33 E-value=6.4e-14 Score=117.25 Aligned_cols=125 Identities=18% Similarity=0.213 Sum_probs=68.0
Q ss_pred cCCceeEEEcCCccccCcccCC--CCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEE
Q 045270 295 SIPALRFIDLSSHQLRGNIHQL--PNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLL 372 (440)
Q Consensus 295 ~~~~L~~L~l~~~~~~~~~~~~--~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L 372 (440)
.+++|++|++++|.+.+.. .. +++|+.|++++|.+. .+|..+.. +++|++|++++|.+++ .+ .+..+++|++|
T Consensus 46 ~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~-~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L 120 (198)
T 1ds9_A 46 TLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIK-KIENLDAV-ADTLEELWISYNQIAS-LS-GIEKLVNLRVL 120 (198)
T ss_dssp HTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH-HHHCSEEEEEEEECCC-HH-HHHHHHHSSEE
T ss_pred cCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcc-cccchhhc-CCcCCEEECcCCcCCc-CC-ccccCCCCCEE
Confidence 3566666666666655422 11 356666666666665 45543332 4566666666666654 23 45556666666
Q ss_pred EcCCCcCCCCCc--hh-hhccccEEECCCCcccCCchh----------hhhcCCCCcEEECCCCccc
Q 045270 373 DLSNNSFMKKSD--AF-LNCLLQTLDLNGNRLQGTVPK----------SIANCKMLEVLNLGNNQFS 426 (440)
Q Consensus 373 ~l~~n~i~~~~~--~~-~~~~L~~L~l~~n~~~~~~~~----------~~~~l~~L~~L~l~~n~~~ 426 (440)
++++|.+..++. .+ ..++|+.|++++|++.+..|. .+..+++|+.|+ +++++
T Consensus 121 ~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 121 YMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp EESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred ECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 666666655433 11 133466666666666544322 255566666654 55554
No 141
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.33 E-value=7.3e-12 Score=102.03 Aligned_cols=101 Identities=24% Similarity=0.301 Sum_probs=46.9
Q ss_pred EEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCchhh--hccccEEECCCC
Q 045270 322 YIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSDAFL--NCLLQTLDLNGN 399 (440)
Q Consensus 322 ~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~~~~--~~~L~~L~l~~n 399 (440)
.++++++.+. .+|..+ .+.|+.|++++|.+++..+..|..+++|++|++++|+++.++...+ ..+|+.|++++|
T Consensus 16 ~l~~~~n~l~-~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 16 LVNCQNIRLA-SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp EEECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCCC-ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 3444444443 344332 2344455555555444444444445555555555555544433322 233555555555
Q ss_pred cccCCchhhhhcCCCCcEEECCCCccc
Q 045270 400 RLQGTVPKSIANCKMLEVLNLGNNQFS 426 (440)
Q Consensus 400 ~~~~~~~~~~~~l~~L~~L~l~~n~~~ 426 (440)
++....+..|..+++|+.|++++|++.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 555443334555555555555555543
No 142
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.32 E-value=5.5e-14 Score=117.64 Aligned_cols=131 Identities=21% Similarity=0.237 Sum_probs=73.3
Q ss_pred ccCCCCeEEecCCccCCC-----ccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccchhhhcc
Q 045270 45 SLHYLRSLNLARTSFNGT-----QIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEH 119 (440)
Q Consensus 45 ~l~~L~~L~l~~~~~~~~-----~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~ 119 (440)
....++.++++.+.+... .+|..+..+++|++|++++|.+.+ +| .+..+++|++|++++|.+. .++. .+..
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~-~~~~ 91 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIEN-LDAV 91 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSS-HHHH
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccc-hhhc
Confidence 334444444444444322 123366667777777777776663 55 6666677777777777666 3332 3455
Q ss_pred cccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccc--cccccccCccEEeccccccc
Q 045270 120 LLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIP--VSVFELKKLTSLLLSSNNLH 190 (440)
Q Consensus 120 l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~ 190 (440)
+++|++|++++|.++ .+| .+.. +++|++|++++|.+.. .+ ..+..+++|++|++++|.+.
T Consensus 92 ~~~L~~L~L~~N~l~-~l~-~~~~--------l~~L~~L~l~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 92 ADTLEELWISYNQIA-SLS-GIEK--------LVNLRVLYMSNNKITN-WGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HHHCSEEEEEEEECC-CHH-HHHH--------HHHSSEEEESEEECCC-HHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CCcCCEEECcCCcCC-cCC-cccc--------CCCCCEEECCCCcCCc-hhHHHHHhcCCCCCEEEecCCccc
Confidence 566666666666665 233 2322 2466666666666552 22 24555666666666666554
No 143
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.28 E-value=1.1e-09 Score=101.97 Aligned_cols=102 Identities=16% Similarity=0.287 Sum_probs=49.0
Q ss_pred CCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCCcCCCCCc-hhhhc-cccEEE
Q 045270 318 NNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNSFMKKSD-AFLNC-LLQTLD 395 (440)
Q Consensus 318 ~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~-~L~~L~ 395 (440)
..|+.+.+..... .++...+..++.|+.+.+. +.++.+...+|.+|.+|+.+.|..+ ++.++. ++..+ +|+.+.
T Consensus 265 ~~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ 340 (394)
T 4gt6_A 265 AYLASVKMPDSVV--SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIA 340 (394)
T ss_dssp SSCCEEECCTTCC--EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEE
T ss_pred ccccEEecccccc--eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEE
Confidence 3444444433221 2333333335555555553 2233344445555666666665432 444422 33332 366666
Q ss_pred CCCCcccCCchhhhhcCCCCcEEECCCCc
Q 045270 396 LNGNRLQGTVPKSIANCKMLEVLNLGNNQ 424 (440)
Q Consensus 396 l~~n~~~~~~~~~~~~l~~L~~L~l~~n~ 424 (440)
|..+ ++.....+|.+|++|+.+++.++.
T Consensus 341 ip~s-v~~I~~~aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 341 IPSS-VTKIPESAFSNCTALNNIEYSGSR 368 (394)
T ss_dssp ECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred ECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence 5432 444445566666666666666553
No 144
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.28 E-value=1.6e-11 Score=99.64 Aligned_cols=104 Identities=19% Similarity=0.240 Sum_probs=63.5
Q ss_pred EEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecC
Q 045270 24 IGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDF 103 (440)
Q Consensus 24 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 103 (440)
++++++++.++. +|. .+ .+.|++|++++|.+... .+..|.++++|++|++++|.+.+..+..|..+++|++|+|
T Consensus 12 ~~l~~s~n~l~~-ip~--~~--~~~l~~L~L~~N~i~~~-~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 85 (170)
T 3g39_A 12 TTVDCSGKSLAS-VPT--GI--PTTTQVLYLYDNQITKL-EPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL 85 (170)
T ss_dssp TEEECTTSCCSS-CCS--CC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEeCCCCcCc-cCc--cC--CCCCcEEEcCCCcCCcc-ChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence 456666666654 333 22 26677777777766554 4556666777777777777766444444566667777777
Q ss_pred CCCcccCccchhhhcccccceEEEecCCccC
Q 045270 104 SFNQFSGSISSIRWEHLLNLVYAVLSDNSLN 134 (440)
Q Consensus 104 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 134 (440)
++|.++ .++...+..+++|++|++++|.+.
T Consensus 86 ~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 86 NDNQLK-SIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCccC-EeCHHHhcCCCCCCEEEeCCCCCC
Confidence 776666 333334566666666666666554
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.26 E-value=2.2e-11 Score=99.14 Aligned_cols=104 Identities=14% Similarity=0.182 Sum_probs=65.2
Q ss_pred EEEeeccceeecccCCCccccccCCCCeEEecCCccCCCccccchhcCCCCcEEEcccCccccCCcccccccccCceecC
Q 045270 24 IGLDLSTESISGGIENAASLFSLHYLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDF 103 (440)
Q Consensus 24 ~~L~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L 103 (440)
+.++++++.++. +|. .+. ++|++|++++|.+... .+..|.++++|++|++++|.+.+..+..|.++++|++|+|
T Consensus 15 ~~l~~~~n~l~~-iP~--~~~--~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L 88 (174)
T 2r9u_A 15 TLVNCQNIRLAS-VPA--GIP--TDKQRLWLNNNQITKL-EPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDL 88 (174)
T ss_dssp SEEECCSSCCSS-CCS--CCC--TTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cEEEeCCCCCCc-cCC--CcC--CCCcEEEeCCCCcccc-CHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEEC
Confidence 566777776643 443 232 6777777777776554 4566667777777777777776444444566777777777
Q ss_pred CCCcccCccchhhhcccccceEEEecCCccC
Q 045270 104 SFNQFSGSISSIRWEHLLNLVYAVLSDNSLN 134 (440)
Q Consensus 104 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 134 (440)
++|.+. .++...+..+++|++|++++|.+.
T Consensus 89 ~~N~l~-~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 89 NDNHLK-SIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CSSCCC-CCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CCCccc-eeCHHHhccccCCCEEEeCCCCcc
Confidence 777766 344334666666666666666665
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.21 E-value=5.7e-13 Score=122.36 Aligned_cols=167 Identities=19% Similarity=0.177 Sum_probs=104.3
Q ss_pred ccCCCCeEEecCCccCCCccccchhc-----CCCCcEEEcccCccccCCcccc-cccccCceecCCCCcccCccchhhh-
Q 045270 45 SLHYLRSLNLARTSFNGTQIPSKLAN-----ISSLTYLNLSDAGFAGHIPLQI-SSMARLVALDFSFNQFSGSISSIRW- 117 (440)
Q Consensus 45 ~l~~L~~L~l~~~~~~~~~l~~~~~~-----l~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~~- 117 (440)
..++|+.|++++|.+... ....+.. .++|++|+|++|.+.......+ ..+++|++|+|++|.+.+.... .+
T Consensus 70 ~~~~L~~L~Ls~n~l~~~-~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~-~L~ 147 (372)
T 3un9_A 70 VLSSLRQLNLAGVRMTPV-KCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACK-DLR 147 (372)
T ss_dssp HHTTCCEEECTTSCCCHH-HHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHH-HHH
T ss_pred HHhhCCEEEecCCCCCHH-HHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHH-HHH
Confidence 346788888888887543 2223322 2678888888887764333333 3456788888888877633222 22
Q ss_pred ----cccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCc----cccccccccCccEEecccccc
Q 045270 118 ----EHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGS----IPVSVFELKKLTSLLLSSNNL 189 (440)
Q Consensus 118 ----~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~ 189 (440)
...++|++|++++|.+++.....+.... ..+++|++|++++|.+... +...+...++|++|++++|.+
T Consensus 148 ~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L----~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i 223 (372)
T 3un9_A 148 DLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL----AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA 223 (372)
T ss_dssp HHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH----HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCC
T ss_pred HHHHhcCCccceeeCCCCCCChHHHHHHHHHH----hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCC
Confidence 2357788888888887643222221110 2336788888888877632 244556677888888888887
Q ss_pred ccccc----hhhHhcCCCCcEEEcCCCcccccC
Q 045270 190 HGTVQ----LDKILNLGNLAKLDLSYNSLAVDE 218 (440)
Q Consensus 190 ~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~ 218 (440)
. ... ...+...++|+.|++++|.++...
T Consensus 224 ~-~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g 255 (372)
T 3un9_A 224 G-DTAALALARAAREHPSLELLHLYFNELSSEG 255 (372)
T ss_dssp C-HHHHHHHHHHHHHCSSCCEEECTTSSCCHHH
T ss_pred C-HHHHHHHHHHHHhCCCCCEEeccCCCCCHHH
Confidence 6 222 223456688889999888876543
No 147
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.20 E-value=4.8e-09 Score=97.50 Aligned_cols=325 Identities=16% Similarity=0.182 Sum_probs=166.6
Q ss_pred cccccC-CCCeEEecCCccCCCccccchhcCCCCcEEEcccCc---cccCCcccccccccCceecCCCCcccCccchhhh
Q 045270 42 SLFSLH-YLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAG---FAGHIPLQISSMARLVALDFSFNQFSGSISSIRW 117 (440)
Q Consensus 42 ~~~~l~-~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~---~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~ 117 (440)
+|.+++ .|+.+.+... +... ...+|.++.+|+.+.+..+. ++.....+|..+.+|+.+.+..+ +. .+...++
T Consensus 58 aF~~~~~~L~sI~iP~s-vt~I-g~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~I~~~aF 133 (394)
T 4gt6_A 58 VFCNYKYVLTSVQIPDT-VTEI-GSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-EIDSEAF 133 (394)
T ss_dssp TTTTCCSCCCEEEECTT-CCEE-CTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-EECTTTT
T ss_pred hccCCCCcCEEEEECCC-eeEE-hHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-eehhhhh
Confidence 677774 5888888543 3332 34678888999999887653 44445667788888888877654 22 4455567
Q ss_pred cccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCCccCCccccccccccCccEEeccccccccccchhh
Q 045270 118 EHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVFELKKLTSLLLSSNNLHGTVQLDK 197 (440)
Q Consensus 118 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 197 (440)
..+.+|+.+.+..... .++...+ ..|..|+.+.+..+ +. .+.........|+.+.+...-. .+....
T Consensus 134 ~~c~~L~~i~lp~~~~--~I~~~~F-------~~c~~L~~i~~~~~-~~-~I~~~aF~~~~l~~i~ip~~~~--~i~~~a 200 (394)
T 4gt6_A 134 HHCEELDTVTIPEGVT--SVADGMF-------SYCYSLHTVTLPDS-VT-AIEERAFTGTALTQIHIPAKVT--RIGTNA 200 (394)
T ss_dssp TTCTTCCEEECCTTCC--EECTTTT-------TTCTTCCEEECCTT-CC-EECTTTTTTCCCSEEEECTTCC--EECTTT
T ss_pred hhhcccccccccceee--eecccce-------ecccccccccccce-ee-EeccccccccceeEEEECCccc--ccccch
Confidence 7777888777654321 2222221 45567777777643 22 2222222345677776664432 334445
Q ss_pred HhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCCCCCCCCCcccCcccEEeccCcccccccCcccccccccce
Q 045270 198 ILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCKLREIPNLKNQSQLQYLYLSENQISREIPNWIWRVSVVGL 277 (440)
Q Consensus 198 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 277 (440)
|..+..++................ +........-.. .+.....+..+.+.. .+.......|
T Consensus 201 f~~c~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---------~~~~~~~~~~~~ip~-~v~~i~~~aF-------- 261 (394)
T 4gt6_A 201 FSECFALSTITSDSESYPAIDNVL-YEKSANGDYALI---------RYPSQREDPAFKIPN-GVARIETHAF-------- 261 (394)
T ss_dssp TTTCTTCCEEEECCSSSCBSSSCE-EEECTTSCEEEE---------ECCTTCCCSEEECCT-TEEEECTTTT--------
T ss_pred hhhccccceeccccccccccccee-eccccccccccc---------ccccccccceEEcCC-cceEccccee--------
Confidence 666666666655443322111100 000000000000 001111111111111 0100011111
Q ss_pred eEEEccCcccccccCCccCCceeEEEcCCcc--ccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccc
Q 045270 278 HCLNLSHNLLVGFQGPYSIPALRFIDLSSHQ--LRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGL 355 (440)
Q Consensus 278 ~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l 355 (440)
..+..|+.+.+.... +.......+++|+.+.+.. .++ .++...|..+++|+.+.+.++ +
T Consensus 262 ----------------~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~-~i~-~I~~~aF~~c~~L~~i~lp~~-v 322 (394)
T 4gt6_A 262 ----------------DSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS-RIT-ELPESVFAGCISLKSIDIPEG-I 322 (394)
T ss_dssp ----------------TTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT-TCC-EECTTTTTTCTTCCEEECCTT-C
T ss_pred ----------------eecccccEEecccccceecCcccccccccccccCCC-ccc-ccCceeecCCCCcCEEEeCCc-c
Confidence 123344444443221 1122233345666666643 343 566666766888888888754 5
Q ss_pred cccchhhhhccCCCCEEEcCCCcCCCCCc-hhhhc-cccEEECCCCcccCCchhhhhcCCCCcEEECCCCcc
Q 045270 356 TGIIPASLCNATTLSLLDLSNNSFMKKSD-AFLNC-LLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQF 425 (440)
Q Consensus 356 ~~~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~~~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 425 (440)
+.+...+|.+|.+|+.+.|.. .++.++. ++..+ +|+.+++.++... ..++..+.+|+.+.+..+.+
T Consensus 323 ~~I~~~aF~~C~~L~~i~ip~-sv~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 323 TQILDDAFAGCEQLERIAIPS-SVTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CEECTTTTTTCTTCCEEEECT-TCCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred cEehHhHhhCCCCCCEEEECc-ccCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence 545667888889999988864 4777744 44443 4899988887543 24677788899888876643
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.13 E-value=4.1e-12 Score=116.63 Aligned_cols=117 Identities=20% Similarity=0.135 Sum_probs=60.4
Q ss_pred CCCCcEEEcccCccccCCccccccc-----ccCceecCCCCcccCccchhhhcccccceEEEecCCccCCCCCccccccc
Q 045270 71 ISSLTYLNLSDAGFAGHIPLQISSM-----ARLVALDFSFNQFSGSISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFP 145 (440)
Q Consensus 71 l~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 145 (440)
++.|++|++++|.+.......+... ++|++|+|++|.+.+.........+++|++|++++|.+++.....+....
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4667777877777664333333322 57777777777765333332334456677777777766543333222110
Q ss_pred cccccCcccccEEEcCCCccCCc----cccccccccCccEEeccccccc
Q 045270 146 IFSNASSSALDTLDLSGNRLRGS----IPVSVFELKKLTSLLLSSNNLH 190 (440)
Q Consensus 146 ~l~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~ 190 (440)
....+.|++|++++|.+... ++..+...++|++|++++|.+.
T Consensus 151 ---~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~ 196 (372)
T 3un9_A 151 ---LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG 196 (372)
T ss_dssp ---HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred ---HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence 01224566666666655421 2222334455555555555543
No 149
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.98 E-value=6.4e-08 Score=89.45 Aligned_cols=116 Identities=16% Similarity=0.213 Sum_probs=66.3
Q ss_pred cCCceeEEEcCCc--cccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEE
Q 045270 295 SIPALRFIDLSSH--QLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLL 372 (440)
Q Consensus 295 ~~~~L~~L~l~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L 372 (440)
.+..|+.+.+..+ .+.......+.+|+.+.+..+ +. .++...+..+++|+.+.+.++.++.+...+|.+|.+|+.+
T Consensus 238 ~~~~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i 315 (379)
T 4h09_A 238 GMKALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSV 315 (379)
T ss_dssp TCSSCCEEEECTTCCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEE
T ss_pred CCccceEEEcCCCccEeCccccceeehhcccccccc-ce-eccccccccccccccccccccccceehhhhhcCCCCCCEE
Confidence 3555666555443 122233344556777777543 33 4555555557777777777776665666677777777777
Q ss_pred EcCCCcCCCCCc-hhhhc-cccEEECCCCcccCCchhhhhcCCC
Q 045270 373 DLSNNSFMKKSD-AFLNC-LLQTLDLNGNRLQGTVPKSIANCKM 414 (440)
Q Consensus 373 ~l~~n~i~~~~~-~~~~~-~L~~L~l~~n~~~~~~~~~~~~l~~ 414 (440)
.|..+ ++.++. ++..+ +|+.+.+..+ ++.....+|.++..
T Consensus 316 ~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 316 TLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI 357 (379)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred EcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence 77543 555533 33343 3777666543 44445556666543
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.92 E-value=2.7e-09 Score=97.47 Aligned_cols=102 Identities=24% Similarity=0.209 Sum_probs=65.0
Q ss_pred EEEcCCc-cccCccc-CCCCCccEEEccC-CcccccCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCCC
Q 045270 301 FIDLSSH-QLRGNIH-QLPNNLIYIDFSN-NNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNN 377 (440)
Q Consensus 301 ~L~l~~~-~~~~~~~-~~~~~L~~L~L~~-~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n 377 (440)
.++.+++ ++..... ...++|++|+|++ |.+. .++...+..+++|+.|+|++|.+++..+..|..+++|++|+|++|
T Consensus 12 ~v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 12 GLRCTRDGALDSLHHLPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp CEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEEcCCCCCCCccCCCCCCCCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 3455555 5554332 1134577777775 7776 444433434777777777777777777777777777777777777
Q ss_pred cCCCCCchhh-hccccEEECCCCcccC
Q 045270 378 SFMKKSDAFL-NCLLQTLDLNGNRLQG 403 (440)
Q Consensus 378 ~i~~~~~~~~-~~~L~~L~l~~n~~~~ 403 (440)
++..++...+ ...|+.|++.+|++..
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCccC
Confidence 7777755443 2237777777777764
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.90 E-value=3.4e-09 Score=96.77 Aligned_cols=104 Identities=20% Similarity=0.205 Sum_probs=82.6
Q ss_pred CeEEecCC-ccCCCccccchhcCCCCcEEEccc-CccccCCcccccccccCceecCCCCcccCccchhhhcccccceEEE
Q 045270 50 RSLNLART-SFNGTQIPSKLANISSLTYLNLSD-AGFAGHIPLQISSMARLVALDFSFNQFSGSISSIRWEHLLNLVYAV 127 (440)
Q Consensus 50 ~~L~l~~~-~~~~~~l~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~~l~~L~~L~ 127 (440)
..++++++ .+.. +|. +..+++|++|+|++ |.+.+..+..|..+++|++|+|++|.+++ ++...|..+++|++|+
T Consensus 11 ~~v~~~~~n~l~~--ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~ 86 (347)
T 2ifg_A 11 SGLRCTRDGALDS--LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFTPRLSRLN 86 (347)
T ss_dssp SCEECCSSCCCTT--TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSCSCCCEEE
T ss_pred CEEEcCCCCCCCc--cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccce-eCHHHhcCCcCCCEEe
Confidence 45688777 6643 788 98899999999996 88987777789999999999999999984 4444688999999999
Q ss_pred ecCCccCCCCCccccccccccccCcccccEEEcCCCccC
Q 045270 128 LSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGNRLR 166 (440)
Q Consensus 128 l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~ 166 (440)
|++|.++ .+|..++.. ..|+.|++.+|.+.
T Consensus 87 l~~N~l~-~~~~~~~~~--------~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 87 LSFNALE-SLSWKTVQG--------LSLQELVLSGNPLH 116 (347)
T ss_dssp CCSSCCS-CCCSTTTCS--------CCCCEEECCSSCCC
T ss_pred CCCCccc-eeCHHHccc--------CCceEEEeeCCCcc
Confidence 9999998 555554432 23888999888876
No 152
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.77 E-value=4.5e-09 Score=95.59 Aligned_cols=190 Identities=15% Similarity=0.132 Sum_probs=115.5
Q ss_pred cccccCCCCeEEecCCccC--------CCccccchhcCCCCcEEEcccCccccCCcccccccccCceecCCCCcccCccc
Q 045270 42 SLFSLHYLRSLNLARTSFN--------GTQIPSKLANISSLTYLNLSDAGFAGHIPLQISSMARLVALDFSFNQFSGSIS 113 (440)
Q Consensus 42 ~~~~l~~L~~L~l~~~~~~--------~~~l~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~~~~~~ 113 (440)
++..+++|+.|.+...... ...+...+..+|+|+.|+++++.-. .++. + .+++|++|++..+.+.....
T Consensus 134 s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l 210 (362)
T 2ra8_A 134 NKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVV 210 (362)
T ss_dssp THHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHH
T ss_pred hhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHH
Confidence 4668899999988654321 1124455677899999999887422 3333 3 37899999999887753322
Q ss_pred h-hhhcccccceEEEecCC--ccCCC-CCccccccccccccCcccccEEEcCCCccCCccccccc---cccCccEEeccc
Q 045270 114 S-IRWEHLLNLVYAVLSDN--SLNGS-IPRSMFEFPIFSNASSSALDTLDLSGNRLRGSIPVSVF---ELKKLTSLLLSS 186 (440)
Q Consensus 114 ~-~~~~~l~~L~~L~l~~~--~~~~~-~~~~~~~l~~l~~~~~~~L~~L~l~~~~~~~~~~~~~~---~~~~L~~L~l~~ 186 (440)
. .....+++|++|+|+.+ ...+. ....+... +....+++|++|++.+|.+....+..+. .+++|++|+++.
T Consensus 211 ~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~--l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~ 288 (362)
T 2ra8_A 211 EDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL--FSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISA 288 (362)
T ss_dssp HHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG--SCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCS
T ss_pred HHHHHccCCCCcEEEEeccccccccchhHHHHHHH--HhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCC
Confidence 1 12237899999998642 21111 11111111 1113468999999998887633332232 478999999999
Q ss_pred cccccccc---hhhHhcCCCCcEEEcCCCcccccCCccccCCccccceeecCCCC
Q 045270 187 NNLHGTVQ---LDKILNLGNLAKLDLSYNSLAVDESSRNYSFSPMLELLNLASCK 238 (440)
Q Consensus 187 ~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 238 (440)
|.+...-. ...+..+++|+.|+++.|.++..........+ ...++++++.
T Consensus 289 n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 289 GVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp SCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred CCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence 88763211 11235678999999999987644322211001 3456776654
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.76 E-value=3.2e-08 Score=90.00 Aligned_cols=183 Identities=16% Similarity=0.131 Sum_probs=115.4
Q ss_pred CCCCeEEecCCccCC-C------ccccchhcCCCCcEEEcccCccc---------cCCcccccccccCceecCCCCcccC
Q 045270 47 HYLRSLNLARTSFNG-T------QIPSKLANISSLTYLNLSDAGFA---------GHIPLQISSMARLVALDFSFNQFSG 110 (440)
Q Consensus 47 ~~L~~L~l~~~~~~~-~------~l~~~~~~l~~L~~L~l~~~~~~---------~~~~~~~~~l~~L~~L~L~~~~~~~ 110 (440)
..++.|.+....+.. . .+.+++.++++|+.|.+.+.... +.+...+..+|+|+.|+|+++.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 456777776554331 1 12445667899999999664321 124455677899999999887311
Q ss_pred ccchhhhcccccceEEEecCCccCCCCCccccccccccccCcccccEEEcCCC--ccCCc-----ccccc--ccccCccE
Q 045270 111 SISSIRWEHLLNLVYAVLSDNSLNGSIPRSMFEFPIFSNASSSALDTLDLSGN--RLRGS-----IPVSV--FELKKLTS 181 (440)
Q Consensus 111 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~~~~~~L~~L~l~~~--~~~~~-----~~~~~--~~~~~L~~ 181 (440)
.++. + .+++|++|++..|.+.......+.. ..+++|++|+++.+ ...+. +...+ ..+++|+.
T Consensus 186 ~l~~--~-~~~~L~~L~L~~~~l~~~~l~~l~~------~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~ 256 (362)
T 2ra8_A 186 SIGK--K-PRPNLKSLEIISGGLPDSVVEDILG------SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKW 256 (362)
T ss_dssp BCCS--C-BCTTCSEEEEECSBCCHHHHHHHHH------SBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCE
T ss_pred eecc--c-cCCCCcEEEEecCCCChHHHHHHHH------ccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCE
Confidence 2222 2 3789999999988776433333321 24578999988532 11111 11122 24799999
Q ss_pred EeccccccccccchhhHh---cCCCCcEEEcCCCcccccCCccc---cCCccccceeecCCCCCC
Q 045270 182 LLLSSNNLHGTVQLDKIL---NLGNLAKLDLSYNSLAVDESSRN---YSFSPMLELLNLASCKLR 240 (440)
Q Consensus 182 L~l~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~l~ 240 (440)
|.+.+|.+..... ..+. .+++|+.|+++.|.+........ +..+++|+.|+++.|.++
T Consensus 257 L~L~~~~i~~~~~-~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 257 LGIVDAEEQNVVV-EMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp EEEESCTTHHHHH-HHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred EeCCCCCCchHHH-HHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 9999988763222 2222 47889999999998875432221 245788999999999775
No 154
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.71 E-value=2.4e-06 Score=78.76 Aligned_cols=141 Identities=16% Similarity=0.112 Sum_probs=101.3
Q ss_pred ccCCceeEEEcCCc--cccCcccCCCCCccEEEccCCcccccCCccccccCCCcceEecccccccccchhhhhccCCCCE
Q 045270 294 YSIPALRFIDLSSH--QLRGNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSL 371 (440)
Q Consensus 294 ~~~~~L~~L~l~~~--~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~ 371 (440)
..+..++.+.+..+ .+.......+..|+.+.+..+ ++ .++...+..+..|+.+.+..+ +.......|.+|++|+.
T Consensus 214 ~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~ 290 (379)
T 4h09_A 214 SYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTK 290 (379)
T ss_dssp TTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCE
T ss_pred ccccccceeeeccceeEEccccccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc-ceecccccccccccccc
Confidence 34667777777544 122333444678999998765 44 566666766889999998654 54456678999999999
Q ss_pred EEcCCCcCCCCCc-hhhhc-cccEEECCCCcccCCchhhhhcCCCCcEEECCCCcccccCcccccCCCCC
Q 045270 372 LDLSNNSFMKKSD-AFLNC-LLQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQFSDKFPCWLYDAPSL 439 (440)
Q Consensus 372 L~l~~n~i~~~~~-~~~~~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~~~~L 439 (440)
+.+.++.++.++. ++..+ +|+.+.|..+ ++.....+|.+|++|+.+.+..+ ++......|.+|..+
T Consensus 291 i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 291 VVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSIT 358 (379)
T ss_dssp EEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred ccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence 9999988988854 44443 5999999754 66567789999999999998654 555556667766543
No 155
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.56 E-value=4.7e-08 Score=78.03 Aligned_cols=85 Identities=8% Similarity=0.036 Sum_probs=63.2
Q ss_pred CCcceEecccccccccchhhhhccCCCCEEEcCCCc-CCCCCchhhh------ccccEEECCCCc-ccCCchhhhhcCCC
Q 045270 343 PRLRYFCAANNGLTGIIPASLCNATTLSLLDLSNNS-FMKKSDAFLN------CLLQTLDLNGNR-LQGTVPKSIANCKM 414 (440)
Q Consensus 343 ~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~n~-i~~~~~~~~~------~~L~~L~l~~n~-~~~~~~~~~~~l~~ 414 (440)
..|+.|++++|.+++.-...+..+++|++|++++|. |++....... ++|++|+|++|. +++.....+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 467888888888776666667788888888888885 5554322222 258999998885 88777778888999
Q ss_pred CcEEECCCCc-ccc
Q 045270 415 LEVLNLGNNQ-FSD 427 (440)
Q Consensus 415 L~~L~l~~n~-~~~ 427 (440)
|+.|++++|+ +++
T Consensus 141 L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 141 LKYLFLSDLPGVKE 154 (176)
T ss_dssp CCEEEEESCTTCCC
T ss_pred CCEEECCCCCCCCc
Confidence 9999999985 443
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.48 E-value=2.2e-08 Score=82.18 Aligned_cols=67 Identities=12% Similarity=0.051 Sum_probs=32.2
Q ss_pred ccccCCCCeEEecCC-ccCCCc---cccchhcCCCCcEEEcccCccccC----CcccccccccCceecCCCCccc
Q 045270 43 LFSLHYLRSLNLART-SFNGTQ---IPSKLANISSLTYLNLSDAGFAGH----IPLQISSMARLVALDFSFNQFS 109 (440)
Q Consensus 43 ~~~l~~L~~L~l~~~-~~~~~~---l~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~L~~~~~~ 109 (440)
+...+.|++|++++| .+.... +...+...++|++|+|++|.+... +...+...+.|++|+|++|.+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 445566666666665 543321 233344455566666666555422 2222333345555555555544
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.38 E-value=6.4e-08 Score=79.38 Aligned_cols=71 Identities=10% Similarity=0.031 Sum_probs=42.6
Q ss_pred ccchhcCCCCcEEEcccC-ccccC----CcccccccccCceecCCCCcccCccc---hhhhcccccceEEEecCCccCC
Q 045270 65 PSKLANISSLTYLNLSDA-GFAGH----IPLQISSMARLVALDFSFNQFSGSIS---SIRWEHLLNLVYAVLSDNSLNG 135 (440)
Q Consensus 65 ~~~~~~l~~L~~L~l~~~-~~~~~----~~~~~~~l~~L~~L~L~~~~~~~~~~---~~~~~~l~~L~~L~l~~~~~~~ 135 (440)
...+...+.|++|+|++| .+... +...+...+.|++|+|++|.+.+... ...+...+.|++|++++|.+.+
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 345566788888888887 66532 33444556777777777777653221 1123444566666666666653
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.36 E-value=1.6e-07 Score=75.01 Aligned_cols=83 Identities=12% Similarity=0.173 Sum_probs=41.1
Q ss_pred CCCeEEecCCccCCCccccchhcCCCCcEEEcccCc-cccCCccccccc----ccCceecCCCCc-ccCccchhhhcccc
Q 045270 48 YLRSLNLARTSFNGTQIPSKLANISSLTYLNLSDAG-FAGHIPLQISSM----ARLVALDFSFNQ-FSGSISSIRWEHLL 121 (440)
Q Consensus 48 ~L~~L~l~~~~~~~~~l~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l----~~L~~L~L~~~~-~~~~~~~~~~~~l~ 121 (440)
.|++||+++|.++.. ....+.++++|++|+|++|. +++..-..++.+ ++|++|+|++|. +++.. ...+..++
T Consensus 62 ~L~~LDLs~~~Itd~-GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~G-l~~L~~~~ 139 (176)
T 3e4g_A 62 KIQAIDATDSCIMSI-GFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKG-IIALHHFR 139 (176)
T ss_dssp CEEEEEEESCCCCGG-GGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHH-HHHGGGCT
T ss_pred eEeEEeCcCCCccHH-HHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHH-HHHHhcCC
Confidence 455566655554443 23344555666666665553 443222333332 346666666653 33222 12345556
Q ss_pred cceEEEecCCc
Q 045270 122 NLVYAVLSDNS 132 (440)
Q Consensus 122 ~L~~L~l~~~~ 132 (440)
+|++|++++|.
T Consensus 140 ~L~~L~L~~c~ 150 (176)
T 3e4g_A 140 NLKYLFLSDLP 150 (176)
T ss_dssp TCCEEEEESCT
T ss_pred CCCEEECCCCC
Confidence 66666666654
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.26 E-value=1.7e-06 Score=74.52 Aligned_cols=78 Identities=26% Similarity=0.264 Sum_probs=54.7
Q ss_pred CCCcceEeccccccccc--chhhhhccCCCCEEEcCCCcCCCCCchhhhc--cccEEECCCCcccCCch-------hhhh
Q 045270 342 MPRLRYFCAANNGLTGI--IPASLCNATTLSLLDLSNNSFMKKSDAFLNC--LLQTLDLNGNRLQGTVP-------KSIA 410 (440)
Q Consensus 342 ~~~L~~L~l~~~~l~~~--~~~~~~~~~~L~~L~l~~n~i~~~~~~~~~~--~L~~L~l~~n~~~~~~~-------~~~~ 410 (440)
+|.|+.|++++|.+++. ++..+..+++|+.|+|++|.|.++....... .|++|++++|++.+..| ..+.
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~ 248 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRE 248 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHH
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccCCcceEEccCCcCccccCcchhHHHHHHH
Confidence 67888888888887763 3456677888888888888887763322223 68888888888775433 3467
Q ss_pred cCCCCcEEE
Q 045270 411 NCKMLEVLN 419 (440)
Q Consensus 411 ~l~~L~~L~ 419 (440)
.+|+|+.||
T Consensus 249 ~~P~L~~LD 257 (267)
T 3rw6_A 249 RFPKLLRLD 257 (267)
T ss_dssp HCTTCCEES
T ss_pred HCcccCeEC
Confidence 788888764
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.23 E-value=6.1e-07 Score=77.31 Aligned_cols=98 Identities=28% Similarity=0.242 Sum_probs=67.5
Q ss_pred CCCcce--Eeccccccc---ccchhhhhccCCCCEEEcCCCcCCCCCch---h-hhccccEEECCCCcccCCc-hhhhhc
Q 045270 342 MPRLRY--FCAANNGLT---GIIPASLCNATTLSLLDLSNNSFMKKSDA---F-LNCLLQTLDLNGNRLQGTV-PKSIAN 411 (440)
Q Consensus 342 ~~~L~~--L~l~~~~l~---~~~~~~~~~~~~L~~L~l~~n~i~~~~~~---~-~~~~L~~L~l~~n~~~~~~-~~~~~~ 411 (440)
.|.|.. +++..|... .........+++|++|+|++|.+..++.. + ..++|+.|+|++|.+.+.. ...+..
T Consensus 140 dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~ 219 (267)
T 3rw6_A 140 DPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKG 219 (267)
T ss_dssp CHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTT
T ss_pred CcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhccc
Confidence 444544 566666433 22222335789999999999999987432 2 3677999999999999762 233444
Q ss_pred CCCCcEEECCCCcccccCcc-------cccCCCCCC
Q 045270 412 CKMLEVLNLGNNQFSDKFPC-------WLYDAPSLH 440 (440)
Q Consensus 412 l~~L~~L~l~~n~~~~~~~~-------~l~~~~~L~ 440 (440)
+ +|+.|++++|++.+.+|. .+..+|+|+
T Consensus 220 l-~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~ 254 (267)
T 3rw6_A 220 L-KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLL 254 (267)
T ss_dssp S-CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCC
T ss_pred C-CcceEEccCCcCccccCcchhHHHHHHHHCcccC
Confidence 4 999999999999986652 355566553
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.31 E-value=5.7e-05 Score=61.42 Aligned_cols=65 Identities=12% Similarity=0.162 Sum_probs=31.8
Q ss_pred ccCCCCeEEecCC-ccCCC---ccccchhcCCCCcEEEcccCccccCCc----ccccccccCceecCCCCccc
Q 045270 45 SLHYLRSLNLART-SFNGT---QIPSKLANISSLTYLNLSDAGFAGHIP----LQISSMARLVALDFSFNQFS 109 (440)
Q Consensus 45 ~l~~L~~L~l~~~-~~~~~---~l~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~l~~L~~L~L~~~~~~ 109 (440)
+-+.|++|+++++ .+... .+.+++.....|+.|+|++|.+.+... .++...+.|++|+|++|.+.
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig 111 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT 111 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence 4456666666653 44321 133444455566666666665543222 22233345555555555544
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.20 E-value=0.00015 Score=58.91 Aligned_cols=108 Identities=12% Similarity=0.136 Sum_probs=67.0
Q ss_pred CCccEEEccCC-cccccCCcc---ccccCCCcceEeccccccccc----chhhhhccCCCCEEEcCCCcCCCCCchhh--
Q 045270 318 NNLIYIDFSNN-NFTSSIPAD---TGNFMPRLRYFCAANNGLTGI----IPASLCNATTLSLLDLSNNSFMKKSDAFL-- 387 (440)
Q Consensus 318 ~~L~~L~L~~~-~~~~~~~~~---~~~~~~~L~~L~l~~~~l~~~----~~~~~~~~~~L~~L~l~~n~i~~~~~~~~-- 387 (440)
+.|++|+|+++ .+.+.-... ....-+.|+.|+|++|.+.+. +.+.+..-+.|++|+|++|.|.+......
T Consensus 41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~ 120 (197)
T 1pgv_A 41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR 120 (197)
T ss_dssp SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence 35677777664 443211111 122256788888888888644 34445566788888888888876532221
Q ss_pred ----hccccEEECCCC---cccCC----chhhhhcCCCCcEEECCCCcc
Q 045270 388 ----NCLLQTLDLNGN---RLQGT----VPKSIANCKMLEVLNLGNNQF 425 (440)
Q Consensus 388 ----~~~L~~L~l~~n---~~~~~----~~~~~~~l~~L~~L~l~~n~~ 425 (440)
...|++|+|++| .+.+. +.+++..-+.|+.|+++.|..
T Consensus 121 aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 121 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 234889999765 33432 334566778899999987754
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.17 E-value=0.00065 Score=51.50 Aligned_cols=35 Identities=29% Similarity=0.401 Sum_probs=16.4
Q ss_pred ccEEECCCCcccCCchhhhhcCCCCcEEECCCCcc
Q 045270 391 LQTLDLNGNRLQGTVPKSIANCKMLEVLNLGNNQF 425 (440)
Q Consensus 391 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~ 425 (440)
|+.|+|++|.++...+..|..+++|+.|+|++|++
T Consensus 33 l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 33 TTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 44444444444444344444444444555544444
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.55 E-value=0.0049 Score=46.58 Aligned_cols=55 Identities=20% Similarity=0.283 Sum_probs=30.2
Q ss_pred EEEcCCcccc--CcccCCCCCccEEEccCCcccccCCccccccCCCcceEeccccccc
Q 045270 301 FIDLSSHQLR--GNIHQLPNNLIYIDFSNNNFTSSIPADTGNFMPRLRYFCAANNGLT 356 (440)
Q Consensus 301 ~L~l~~~~~~--~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~ 356 (440)
.++-++++++ ......++++++|+|++|.++ .++...+..+++|+.|+|.+|.+.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLT-ALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCS-SCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCCcCCCEEECCCCcCC-ccChhhhhhccccCEEEecCCCee
Confidence 3444444444 333344556666666666665 555555555666666666666553
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=56.31 E-value=12 Score=26.15 Aligned_cols=43 Identities=14% Similarity=0.052 Sum_probs=27.5
Q ss_pred cCCccccccCCCcceEecccccccccchhhhhccCCCCEEEcCC
Q 045270 333 SIPADTGNFMPRLRYFCAANNGLTGIIPASLCNATTLSLLDLSN 376 (440)
Q Consensus 333 ~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~~L~~L~l~~ 376 (440)
.+....|..+.+|+.+.|-.+ ++.+-..+|.+|.+|+.+.+..
T Consensus 10 ~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 10 GMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred EecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 455555655777777777654 3334556677777777777755
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=53.46 E-value=27 Score=24.28 Aligned_cols=40 Identities=13% Similarity=0.010 Sum_probs=22.2
Q ss_pred cccccccCccEEeccccccccccchhhHhcCCCCcEEEcCCC
Q 045270 171 VSVFELKKLTSLLLSSNNLHGTVQLDKILNLGNLAKLDLSYN 212 (440)
Q Consensus 171 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 212 (440)
..|.++.+|+.+.+..+ ++ .+....|.+|.+|+.+.+.+.
T Consensus 14 ~aF~~c~~L~~i~iP~~-v~-~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 14 SLFAGNTVIREITVQPN-IG-LLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CTTTTCTTCCCEEECTT-SS-CCCTTSSTTCTTCCCEEECCS
T ss_pred HHhcCCCCCcEEEcCCc-hh-eEcHHHHhccCCccEEEEcCC
Confidence 34555666666666543 22 444455666666666666543
Done!