BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>045274
MAVRAVNSCSMFRSAACPPLVSFKIQCCYYHFRSLQLRRKSNLGFRLPACRSERQFLNRS
GSQSCSVHSLVDSVMQELVAIRKRLRVFAKVKVSSGELLEDKLENQVLQKGLLLEFKKDS
DRVLLAVAQRPDGKKNWMVYDQVLVETPNAACSLGC

High Scoring Gene Products

Symbol, full name Information P value
EMB2730
AT5G02250 		protein from Arabidopsis thaliana 9.1e-30

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  045274
        (156 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2180172 - symbol:EMB2730 "EMBRYO DEFECTIVE 273...   339  9.1e-30   1


>TAIR|locus:2180172 [details] [associations]
            symbol:EMB2730 "EMBRYO DEFECTIVE 2730" species:3702
            "Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS]
            [GO:0004540 "ribonuclease activity" evidence=IEA;ISS] [GO:0009793
            "embryo development ending in seed dormancy" evidence=NAS]
            [GO:0000175 "3'-5'-exoribonuclease activity" evidence=IDA]
            [GO:0005739 "mitochondrion" evidence=IDA] [GO:0009507 "chloroplast"
            evidence=IDA] [GO:0006364 "rRNA processing" evidence=RCA;IMP]
            [GO:0009658 "chloroplast organization" evidence=RCA;IMP]
            [GO:0006399 "tRNA metabolic process" evidence=RCA] [GO:0009902
            "chloroplast relocation" evidence=RCA] [GO:0010027 "thylakoid
            membrane organization" evidence=RCA] [GO:0034660 "ncRNA metabolic
            process" evidence=RCA] InterPro:IPR001900 Pfam:PF00773
            SMART:SM00955 GO:GO:0005739 EMBL:CP002688 GenomeReviews:BA000015_GR
            GO:GO:0009507 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009658
            GO:GO:0003723 GO:GO:0006364 GO:GO:0000175 eggNOG:COG0557
            EMBL:AL162874 GO:GO:0008859 EMBL:BT010457 EMBL:AK176383
            IPI:IPI00548385 PIR:T48246 RefSeq:NP_195845.2 UniGene:At.4904
            ProteinModelPortal:Q6NQJ6 SMR:Q6NQJ6 STRING:Q6NQJ6 PaxDb:Q6NQJ6
            PRIDE:Q6NQJ6 EnsemblPlants:AT5G02250.1 GeneID:830864
            KEGG:ath:AT5G02250 GeneFarm:4119 TAIR:At5g02250
            HOGENOM:HOG000029837 InParanoid:Q6NQJ6 OMA:RVEEAHP PhylomeDB:Q6NQJ6
            ProtClustDB:CLSN2681022 Genevestigator:Q6NQJ6 Uniprot:Q6NQJ6
        Length = 803

 Score = 339 (124.4 bits), Expect = 9.1e-30, P = 9.1e-30
 Identities = 83/154 (53%), Positives = 103/154 (66%)

Query:     1 MAVRAVNSCSMFR---SAACPPLVSFKIQCCYYHFRSLQLRRKSNLGFRLPACRSERQFL 57
             M+VRA+N CS+ R   SA  PP+  F+ +      R+  LR  S L    P  R++R+FL
Sbjct:     2 MSVRAINGCSIIRTATSAGGPPVSLFRHRI--QRLRASHLREFSKLRLNFPLIRADRRFL 59

Query:    58 NRSGSQSCS--VHSLVDSVMQELVAI--RK--RLRVFAKVKV---SSGELLEDKLENQVL 108
               S + SCS  +HSLV+SV +EL +I  RK  R+RV A VKV   S GE+LEDKL NQ L
Sbjct:    60 GNSDAPSCSTCIHSLVESVSEELESISRRKGSRMRVRASVKVKLTSYGEVLEDKLVNQEL 119

Query:   109 QKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQ 142
             + GLLLEFKKD+DRVLLAV  R DGKKNWMV+DQ
Sbjct:   120 EAGLLLEFKKDADRVLLAVLHRRDGKKNWMVFDQ 153


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.134   0.399    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      156       156   0.00073  106 3  11 22  0.41    31
                                                     30  0.42    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  600 (64 KB)
  Total size of DFA:  140 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.81u 0.08s 15.89t   Elapsed:  00:00:01
  Total cpu time:  15.81u 0.08s 15.89t   Elapsed:  00:00:01
  Start:  Sat May 11 09:28:23 2013   End:  Sat May 11 09:28:24 2013

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