BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045274
         (156 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3NZK|A Chain A, Structure Of Lpxc From Yersinia Enterocolitica Complexed
           With Chir090 Inhibitor
 pdb|3NZK|B Chain B, Structure Of Lpxc From Yersinia Enterocolitica Complexed
           With Chir090 Inhibitor
          Length = 311

 Score = 28.1 bits (61), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 60  SGSQSCSVHSLVDSVMQELVAIRKRLRVFAKVKVSSGELLEDKLENQVLQKGLLLEFKKD 119
            GS S  V+ L+D+ ++EL + +K LR+   V+V  G    DK        G  L+F  D
Sbjct: 110 DGSASPFVYLLLDAGIEELNSAKKFLRLKETVRVEDG----DKWAELSPFNGFRLDFTID 165


>pdb|3UJH|A Chain A, Crystal Structure Of Substrate-Bound Glucose-6-Phosphate
           Isomerase From Toxoplasma Gondii
 pdb|3UJH|B Chain B, Crystal Structure Of Substrate-Bound Glucose-6-Phosphate
           Isomerase From Toxoplasma Gondii
          Length = 567

 Score = 27.3 bits (59), Expect = 3.8,   Method: Composition-based stats.
 Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 1/32 (3%)

Query: 67  VHSLVDSVMQELVAIRKRLRVFAKVKVSSGEL 98
           VH    +V+ E+ A+ +R+RVF++ KV SGE+
Sbjct: 113 VHVDGKNVLDEVHAVLRRIRVFSE-KVRSGEI 143


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.134    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,953,205
Number of Sequences: 62578
Number of extensions: 131804
Number of successful extensions: 338
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 337
Number of HSP's gapped (non-prelim): 4
length of query: 156
length of database: 14,973,337
effective HSP length: 91
effective length of query: 65
effective length of database: 9,278,739
effective search space: 603118035
effective search space used: 603118035
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.7 bits)