BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 045274
         (156 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6NQJ6|RNR1_ARATH Ribonuclease II, chloroplastic/mitochondrial OS=Arabidopsis
           thaliana GN=RNR1 PE=1 SV=1
          Length = 803

 Score =  136 bits (342), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 81/154 (52%), Positives = 102/154 (66%), Gaps = 14/154 (9%)

Query: 1   MAVRAVNSCSMFR---SAACPPLVSFKIQCCYYHFRSLQLRRKSNLGFRLPACRSERQFL 57
           M+VRA+N CS+ R   SA  PP+  F+ +      R+  LR  S L    P  R++R+FL
Sbjct: 2   MSVRAINGCSIIRTATSAGGPPVSLFRHRI--QRLRASHLREFSKLRLNFPLIRADRRFL 59

Query: 58  NRSGSQSCS--VHSLVDSVMQELVAIRKR----LRVFAKVKV---SSGELLEDKLENQVL 108
             S + SCS  +HSLV+SV +EL +I +R    +RV A VKV   S GE+LEDKL NQ L
Sbjct: 60  GNSDAPSCSTCIHSLVESVSEELESISRRKGSRMRVRASVKVKLTSYGEVLEDKLVNQEL 119

Query: 109 QKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQ 142
           + GLLLEFKKD+DRVLLAV  R DGKKNWMV+DQ
Sbjct: 120 EAGLLLEFKKDADRVLLAVLHRRDGKKNWMVFDQ 153


>sp|P73177|RN2H_SYNY3 Uncharacterized ribonuclease sll1290 OS=Synechocystis sp. (strain
           PCC 6803 / Kazusa) GN=sll1290 PE=3 SV=1
          Length = 666

 Score = 43.1 bits (100), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/35 (54%), Positives = 26/35 (74%), Gaps = 1/35 (2%)

Query: 108 LQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQ 142
           ++KG L+EF+   +R  LAV  RPDGKK+W+V DQ
Sbjct: 1   MEKGQLIEFRHQGER-RLAVVDRPDGKKDWVVIDQ 34


>sp|Q68XV4|SYC_RICTY Cysteine--tRNA ligase OS=Rickettsia typhi (strain ATCC VR-144 /
           Wilmington) GN=cysS PE=3 SV=1
          Length = 457

 Score = 30.0 bits (66), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 4/39 (10%)

Query: 81  IRKRLRVFAKVKVSSGELLEDKLENQVLQKGLLLEFKKD 119
           I KRL    K K     LL DK+ NQ+L+K ++LE K D
Sbjct: 415 INKRL----KAKKQKNWLLADKIRNQLLEKKIILEDKSD 449


>sp|Q4HVW2|SPB4_GIBZE ATP-dependent rRNA helicase SPB4 OS=Gibberella zeae (strain PH-1 /
           ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=SPB4 PE=3
           SV=1
          Length = 637

 Score = 29.3 bits (64), Expect = 9.9,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 4/73 (5%)

Query: 39  RKSNLGFR--LPACRSERQFLNRSGSQSCSVHSLVDSVMQELVAIRKRLRVFAKVKVSSG 96
           R  +LGF+  L    S      R+G  S SV   V  +++  V +R  +++  KVK+  G
Sbjct: 199 RLLDLGFKPDLQKILSHLPKQRRTGLFSASVSEAVGEIIR--VGLRNPVKIEVKVKIKGG 256

Query: 97  ELLEDKLENQVLQ 109
            +LED+     LQ
Sbjct: 257 GILEDRKTPASLQ 269


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.134    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,424,338
Number of Sequences: 539616
Number of extensions: 1732547
Number of successful extensions: 5899
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 5889
Number of HSP's gapped (non-prelim): 12
length of query: 156
length of database: 191,569,459
effective HSP length: 107
effective length of query: 49
effective length of database: 133,830,547
effective search space: 6557696803
effective search space used: 6557696803
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)