Query 045274
Match_columns 156
No_of_seqs 15 out of 17
Neff 2.1
Searched_HMMs 29240
Date Mon Mar 25 20:29:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/045274.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/045274hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1nc7_A Hypothetical protein TM 40.4 10 0.00035 29.6 1.3 26 118-143 10-35 (138)
2 3jtz_A Integrase; four strande 27.6 36 0.0012 23.1 2.3 16 125-140 26-41 (88)
3 3ju0_A Phage integrase; four s 25.0 42 0.0014 23.7 2.3 15 125-139 26-40 (108)
4 3cpn_A Beta-xylosidase, family 23.1 44 0.0015 26.4 2.3 17 125-141 264-280 (330)
5 3j21_B 50S ribosomal protein L 21.7 75 0.0026 26.2 3.5 34 108-141 40-74 (239)
6 1rl2_A Protein (ribosomal prot 20.8 99 0.0034 23.2 3.7 32 110-141 15-47 (137)
7 2rlo_A Centaurin-gamma 1; spli 20.6 32 0.0011 23.0 0.9 16 131-146 20-35 (128)
8 2e6z_A Transcription elongatio 20.1 69 0.0023 20.3 2.4 44 106-149 6-49 (59)
9 2yue_A Protein neuralized; str 20.0 1.5E+02 0.0052 22.3 4.7 37 114-150 122-158 (168)
10 3iyu_X Outer capsid protein VP 18.8 1.6E+02 0.0056 28.2 5.5 63 70-132 14-111 (776)
11 2lcd_A AT-rich interactive dom 23.6 25 0.00086 26.7 0.0 46 96-141 45-91 (118)
No 1
>1nc7_A Hypothetical protein TM1070; structural genomics, molecular propeller, PSI, protein structure initiative; 1.55A {Thermotoga maritima} SCOP: b.123.1.1
Probab=40.39 E-value=10 Score=29.55 Aligned_cols=26 Identities=23% Similarity=0.378 Sum_probs=12.8
Q ss_pred ecCCceEEEEEECCCCccceEEeecc
Q 045274 118 KDSDRVLLAVAQRPDGKKNWMVYDQV 143 (156)
Q Consensus 118 Kds~R~lLaVv~rpdGKKNW~v~DQ~ 143 (156)
..|+|-+|.---++-|+|-|++.|-+
T Consensus 10 ~~~~~~~l~~~~~~iG~r~W~IpdGy 35 (138)
T 1nc7_A 10 HSSGRENLYFQGHMNGARKWFFPDGY 35 (138)
T ss_dssp ------------CCCSEEEEEEEEEC
T ss_pred ccchhhhhcccccccccEEEEecCcc
Confidence 45788899999999999999999954
No 2
>3jtz_A Integrase; four stranded beta-sheet, DNA binding protein; 1.30A {Yersinia pestis} PDB: 3rmp_A
Probab=27.63 E-value=36 Score=23.11 Aligned_cols=16 Identities=25% Similarity=0.742 Sum_probs=10.9
Q ss_pred EEEEECCCCccceEEe
Q 045274 125 LAVAQRPDGKKNWMVY 140 (156)
Q Consensus 125 LaVv~rpdGKKNW~v~ 140 (156)
|.+...|.|.|.|+.-
T Consensus 26 L~L~V~psG~K~w~~r 41 (88)
T 3jtz_A 26 LYLLVKPGGSRHWYLK 41 (88)
T ss_dssp EEEEECTTSCEEEEEE
T ss_pred eEEEEecCCCEEEEEE
Confidence 4555677888888653
No 3
>3ju0_A Phage integrase; four stranded beta-sheet, DNA binding protein; 1.60A {Pectobacterium atrosepticum}
Probab=24.95 E-value=42 Score=23.72 Aligned_cols=15 Identities=27% Similarity=0.762 Sum_probs=10.0
Q ss_pred EEEEECCCCccceEE
Q 045274 125 LAVAQRPDGKKNWMV 139 (156)
Q Consensus 125 LaVv~rpdGKKNW~v 139 (156)
|.+...|.|.|-|++
T Consensus 26 L~L~V~psG~K~w~~ 40 (108)
T 3ju0_A 26 MHLLVHPNGSKYWRL 40 (108)
T ss_dssp EEEEECTTSCEEEEE
T ss_pred eEEEEEcCCCEEEEE
Confidence 455557777777765
No 4
>3cpn_A Beta-xylosidase, family 43 glycosyl hydrolase; structural genomics, APC20493, PSI-2, protein structure initiative; HET: MSE UNL; 1.55A {Clostridium acetobutylicum atcc 824} PDB: 3k1u_A*
Probab=23.09 E-value=44 Score=26.40 Aligned_cols=17 Identities=29% Similarity=0.499 Sum_probs=14.1
Q ss_pred EEEEECCCCccceEEee
Q 045274 125 LAVAQRPDGKKNWMVYD 141 (156)
Q Consensus 125 LaVv~rpdGKKNW~v~D 141 (156)
-++++.|||++-|||+=
T Consensus 264 ~~~v~~~dG~~~~~vyh 280 (330)
T 3cpn_A 264 NSFTVSEDGKHDVIVYH 280 (330)
T ss_dssp EEEEECTTSCSEEEEEE
T ss_pred ccEEECCCCCEEEEEEe
Confidence 35889999988999974
No 5
>3j21_B 50S ribosomal protein L2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.73 E-value=75 Score=26.17 Aligned_cols=34 Identities=18% Similarity=0.291 Sum_probs=29.3
Q ss_pred hhceeeEEEEecCCc-eEEEEEECCCCccceEEee
Q 045274 108 LQKGLLLEFKKDSDR-VLLAVAQRPDGKKNWMVYD 141 (156)
Q Consensus 108 LqkG~LlEf~Kds~R-~lLaVv~rpdGKKNW~v~D 141 (156)
--+|...+.+-|..| .-+|+|.-.||+|.||+.-
T Consensus 40 ~i~g~V~~IeyDPnRsA~IALV~~~dgek~YIlAp 74 (239)
T 3j21_B 40 TLRGVVEEIMHDPGRTAPVARVKFENGIEKLIIAP 74 (239)
T ss_dssp CEEEEEEEEEEETTTTEEEEEEEESSSCEEEECCB
T ss_pred CccEEEEEEEECCCCCeeEEEEEecCCCEEEEEcc
Confidence 456899999999998 6789999999999999754
No 6
>1rl2_A Protein (ribosomal protein L2); RNA-binding domain, peptidyltransferease center, X-RAY diffraction; 2.30A {Geobacillus stearothermophilus} SCOP: b.34.5.3 b.40.4.5 PDB: 1c04_A 487d_I
Probab=20.82 E-value=99 Score=23.18 Aligned_cols=32 Identities=22% Similarity=0.424 Sum_probs=27.2
Q ss_pred ceeeEEEEecCCce-EEEEEECCCCccceEEee
Q 045274 110 KGLLLEFKKDSDRV-LLAVAQRPDGKKNWMVYD 141 (156)
Q Consensus 110 kG~LlEf~Kds~R~-lLaVv~rpdGKKNW~v~D 141 (156)
+|...+.+-|..|. -+|+|.-.||+|.|+..-
T Consensus 15 ~~~V~~IeyDPnRsA~IAlv~y~dg~k~yIlAp 47 (137)
T 1rl2_A 15 PGRVATIEYDPNRSANIALINYADGEKRYIIAP 47 (137)
T ss_dssp CEEEEEEEEEGGGTEEEEEEEETTSCEEEEECC
T ss_pred cEEEEEEEECCCCCEEEEEEEeCCCCEEEEEec
Confidence 78898888888874 589999999999998754
No 7
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}
Probab=20.64 E-value=32 Score=23.02 Aligned_cols=16 Identities=13% Similarity=0.052 Sum_probs=12.5
Q ss_pred CCCccceEEeeccccc
Q 045274 131 PDGKKNWMVYDQVLVE 146 (156)
Q Consensus 131 pdGKKNW~v~DQ~g~~ 146 (156)
..=||.|||.+.+|.+
T Consensus 20 k~WkkRwFvL~~~~~l 35 (128)
T 2rlo_A 20 KEWKKKYVTLSSNGFL 35 (128)
T ss_dssp CCEEEEEEEEETTTEE
T ss_pred CCccEEEEEEeCCCEE
Confidence 3458999999988754
No 8
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.09 E-value=69 Score=20.29 Aligned_cols=44 Identities=16% Similarity=-0.025 Sum_probs=36.4
Q ss_pred hhhhceeeEEEEecCCceEEEEEECCCCccceEEeeccccccCc
Q 045274 106 QVLQKGLLLEFKKDSDRVLLAVAQRPDGKKNWMVYDQVLVETPN 149 (156)
Q Consensus 106 ~~LqkG~LlEf~Kds~R~lLaVv~rpdGKKNW~v~DQ~g~~~si 149 (156)
-.+++|=.||...-.=..+-|+++..|+.|-.+..+--|+..|+
T Consensus 6 ~~f~~GD~V~V~~Gpf~g~~G~V~evd~e~v~V~v~~fg~~tpv 49 (59)
T 2e6z_A 6 SGFQPGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDML 49 (59)
T ss_dssp SSCCTTSEEEECSSTTTTCEEEECCCBTTEEEEEECCSSCCSCE
T ss_pred ccCCCCCEEEEeecCCCCCEEEEEEEeCCEEEEEEEecCCCceE
Confidence 45788888998888788899999999999988888877776554
No 9
>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster}
Probab=20.04 E-value=1.5e+02 Score=22.29 Aligned_cols=37 Identities=11% Similarity=0.011 Sum_probs=23.3
Q ss_pred EEEEecCCceEEEEEECCCCccceEEeeccccccCcc
Q 045274 114 LEFKKDSDRVLLAVAQRPDGKKNWMVYDQVLVETPNA 150 (156)
Q Consensus 114 lEf~Kds~R~lLaVv~rpdGKKNW~v~DQ~g~~~si~ 150 (156)
|-|..|.+.--.+.-.=|-++--|+|+|=+|.+..|+
T Consensus 122 l~~~iNg~~~g~~~~~V~~~~pLwavvDvyG~t~~V~ 158 (168)
T 2yue_A 122 VIYGINNEEKGVILTGIDTRSLLWTVIDIYGNCTGIE 158 (168)
T ss_dssp EEEEESSCEEEEEEECCCCSSCCEEEEECCSSCSEEE
T ss_pred EEEEECCCccEEEEcCCCCCCceEEEEEccCCeEEEE
Confidence 3455554433222222366788999999999887664
No 10
>3iyu_X Outer capsid protein VP4; triple layered particle, NEAR atomic resolution, double layered particle, de novo, infectious, icosah virus; HET: NAG; 3.80A {Simian rotavirus A} PDB: 1kri_A
Probab=18.78 E-value=1.6e+02 Score=28.18 Aligned_cols=63 Identities=19% Similarity=0.274 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHHHhhhceeeeee-------------ecccccchhhhhhhhh----------------------hceeeE
Q 045274 70 LVDSVMQELVAIRKRLRVFAKVK-------------VSSGELLEDKLENQVL----------------------QKGLLL 114 (156)
Q Consensus 70 lVdSVleEL~s~Rk~rr~~~s~k-------------i~~gEllddk~~~~~L----------------------qkG~Ll 114 (156)
..-...+|+..+--.|-+.|.+- -|.||..|+-..+.+| .+|+.+
T Consensus 14 YtvdLsDEI~~IGseKtQnVTINPGPFAQTgYAPVnWG~GE~nDSTTVEPvLDGPYQPTtFnpP~~YWiLl~P~~~GVV~ 93 (776)
T 3iyu_X 14 YTVDLSDEIQEIGSTKTQNVTINLGPFAQTGYAPVNWGPGETNDSTTVEPVLDGPYQPTTFNPPVDYWMLLAPTAAGVVV 93 (776)
T ss_dssp HHHHHHHHHHHHHSSCCEECCCCCCCCCCCCCCCC----------------CEEEECSEEECCCTTEEEEECCCSSEEEE
T ss_pred ccccchHHHHHhhhccccceeECCCccccccccccccCCCccCCCCeeeccCCCCCCCcccCCCCceEEEEccCCCCEEE
Confidence 44456788888877775544432 2999999999888776 479999
Q ss_pred EEEecCCceEEEEEECCC
Q 045274 115 EFKKDSDRVLLAVAQRPD 132 (156)
Q Consensus 115 Ef~Kds~R~lLaVv~rpd 132 (156)
|---++|+.+-.++--|+
T Consensus 94 E~TNntd~W~A~ILIEPN 111 (776)
T 3iyu_X 94 EGTNNTDRWLATILVEPN 111 (776)
T ss_dssp EEECSSSCEEEEEEECSS
T ss_pred EeecCCceEEEEEEecCC
Confidence 999999999888888775
No 11
>2lcd_A AT-rich interactive domain-containing protein 4A; tudor domain, RBBP1, transcription; NMR {Homo sapiens}
Probab=23.59 E-value=25 Score=26.71 Aligned_cols=46 Identities=20% Similarity=0.305 Sum_probs=29.6
Q ss_pred cccchhhhhhhhhhceeeEEEEecCCceEEEEEEC-CCCccceEEee
Q 045274 96 GELLEDKLENQVLQKGLLLEFKKDSDRVLLAVAQR-PDGKKNWMVYD 141 (156)
Q Consensus 96 gEllddk~~~~~LqkG~LlEf~Kds~R~lLaVv~r-pdGKKNW~v~D 141 (156)
..+++|-+.+|+|..|--||..-..+.++=|++++ -|.-..=+|+|
T Consensus 45 ~~~v~d~~ikG~l~vG~~ve~~~~~~~~~~~~I~~i~D~S~YtVVFd 91 (118)
T 2lcd_A 45 TQLVQDDQVKGPLRVGAIVETRTSDGSFQEAIISKLTDASWYTVVFD 91 (118)
Confidence 44455566699999999999987645566566654 23333334444
Done!